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{ lib, python3, fetchPypi }:
python3.pkgs.buildPythonPackage rec {
pname = "MACS2";
version = "2.2.7.1";
src = fetchPypi {
inherit pname version;
sha256 = "1rcxj943kgzs746f5jrb72x1cp4v50rk3qmad0m99a02vndscb5d";
};
postPatch = ''
# remove version check which breaks on 3.10
substituteInPlace setup.py \
--replace 'if float(sys.version[:3])<3.6:' 'if False:'
'';
propagatedBuildInputs = with python3.pkgs; [ numpy ];
# To prevent ERROR: diffpeak_cmd (unittest.loader._FailedTest) for obsolete
# function (ImportError: Failed to import test module: diffpeak_cmd)
doCheck = false;
pythonImportsCheck = [ "MACS2" ];
meta = with lib; {
description = "Model-based Analysis for ChIP-Seq";
license = licenses.bsd3;
maintainers = with maintainers; [ gschwartz ];
platforms = platforms.linux;
# error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘use_tracing’; did you mean ‘tracing’?
broken = true;
};
}
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