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| author | markuskowa <markus.kowalewski@gmail.com> | 2019-06-27 12:43:25 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2019-06-27 12:43:25 +0200 |
| commit | a07d045b00a7cf962eca464f648c33ee409a92cf (patch) | |
| tree | 02cd6848f31eadea3f0f2f8741acdff68484cfe9 | |
| parent | fdf2700c32998f2d8f21d452f9044a697ff05032 (diff) | |
| parent | b8b71aaaf97a63a1b6bf286402faf234affe6bf7 (diff) | |
Merge pull request #63488 from jbedo/octopus
octopus: init 0.6.3-beta
| -rw-r--r-- | pkgs/applications/science/biology/octopus/default.nix | 30 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 32 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/octopus/default.nix b/pkgs/applications/science/biology/octopus/default.nix new file mode 100644 index 0000000000000..0a2074a06e970 --- /dev/null +++ b/pkgs/applications/science/biology/octopus/default.nix @@ -0,0 +1,30 @@ +{stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}: + +stdenv.mkDerivation rec { + pname = "octopus"; + version = "0.6.3-beta"; + name = "${pname}-${version}"; + + src = fetchFromGitHub { + owner = "luntergroup"; + repo = "octopus"; + rev = "v${version}"; + sha256 = "042fycg8ppld7iajpzq2d8h8wr0nw43zbl57y125sfihryvr373n"; + }; + + nativeBuildInputs = [ cmake pkg-config ]; + buildInputs = [ boost gmp htslib zlib lzma ]; + + postInstall = '' + mkdir $out/bin + mv $out/octopus $out/bin + ''; + + meta = with stdenv.lib; { + description = "Bayesian haplotype-based mutation calling"; + license = licenses.mit; + homepage = "https://github.com/luntergroup/octopus"; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.x86_64; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index ace2dd383642d..06d1f946a8325 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -22433,6 +22433,8 @@ in niftyseg = callPackage ../applications/science/biology/niftyseg { }; + octopus-caller = callPackage ../applications/science/biology/octopus { }; + paml = callPackage ../applications/science/biology/paml { }; picard-tools = callPackage ../applications/science/biology/picard-tools { }; |