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| author | Sandro <sandro.jaeckel@gmail.com> | 2023-04-23 23:42:38 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-04-23 23:42:38 +0200 |
| commit | 9bc9cfe51d55f3841822773a8ae87988f675a1b1 (patch) | |
| tree | 0b94b636824c1364a1fd882ce2b2539cdf238ed2 | |
| parent | 5b04692dc270a50b6bce7dfe175364ac912db254 (diff) | |
| parent | a272606614d7c22aa8f2091f996c1a8155e3c4a2 (diff) | |
Merge pull request #222660 from natsukium/hh-suite/init
| -rw-r--r-- | pkgs/applications/science/biology/hh-suite/default.nix | 37 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 4 |
2 files changed, 41 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/hh-suite/default.nix b/pkgs/applications/science/biology/hh-suite/default.nix new file mode 100644 index 0000000000000..2e01ace7d0f1a --- /dev/null +++ b/pkgs/applications/science/biology/hh-suite/default.nix @@ -0,0 +1,37 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, xxd +, enableMpi ? false +, mpi +, openmp +}: +stdenv.mkDerivation rec { + pname = "hh-suite"; + version = "3.3.0"; + + src = fetchFromGitHub { + owner = "soedinglab"; + repo = "hh-suite"; + rev = "v${version}"; + hash = "sha256-kjNqJddioCZoh/cZL3YNplweIGopWIGzCYQOnKDqZmw="; + }; + + nativeBuildInputs = [ cmake xxd ]; + cmakeFlags = lib.optional stdenv.hostPlatform.isx86 "-DHAVE_SSE2=1" + ++ lib.optional stdenv.hostPlatform.isAarch "-DHAVE_ARM8=1" + ++ lib.optional stdenv.hostPlatform.avx2Support "-DHAVE_AVX2=1" + ++ lib.optional stdenv.hostPlatform.sse4_1Support "-DHAVE_SSE4_1=1"; + + buildInputs = lib.optional stdenv.cc.isClang openmp + ++ lib.optional enableMpi mpi; + + meta = with lib; { + description = "Remote protein homology detection suite"; + homepage = "https://github.com/soedinglab/hh-suite"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ natsukium ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index d42b9416271f1..28c209401f0d7 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -37147,6 +37147,10 @@ with pkgs; flywheel-cli = callPackage ../applications/science/biology/flywheel-cli { }; + hh-suite = callPackage ../applications/science/biology/hh-suite { + inherit (llvmPackages) openmp; + }; + hisat2 = callPackage ../applications/science/biology/hisat2 { }; htslib = callPackage ../development/libraries/science/biology/htslib { }; |