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| author | Ryan Lahfa <masterancpp@gmail.com> | 2023-05-15 09:09:09 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-05-15 09:09:09 +0200 |
| commit | 308ee09f2f5e5a74e5bf5b47324249352738207c (patch) | |
| tree | 13a10f356c61d520ef80d6b3188c3cf040be10a6 | |
| parent | cd2a1fad0b29f8e38feb23b928ba491c99c28d38 (diff) | |
| parent | 7edb72db10be8a47a818c3a808fe2926a767ed29 (diff) | |
Merge pull request #231598 from natsukium/truvari/disable-tests-darwin
truvari: disable some tests on darwin
| -rw-r--r-- | pkgs/applications/science/biology/truvari/default.nix | 14 |
1 files changed, 14 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/truvari/default.nix b/pkgs/applications/science/biology/truvari/default.nix index cf64070d782f2..e626af56278fa 100644 --- a/pkgs/applications/science/biology/truvari/default.nix +++ b/pkgs/applications/science/biology/truvari/default.nix @@ -1,5 +1,6 @@ { lib , fetchFromGitHub +, fetchpatch , python3Packages , runtimeShell , bcftools @@ -24,6 +25,19 @@ in python3Packages.buildPythonApplication rec { hash = "sha256-UJNMKEV5m2jFqnWvkVAtymkcE2TjPIXp7JqRZpMSqsE="; }; + patches = [ + (fetchpatch { + name = "fix-anno-trf-on-darwin.patch"; + url = "https://github.com/ACEnglish/truvari/commit/f9f36305e8eaa88f951562210e3672a4d4f71265.patch"; + hash = "sha256-7O9jTQDCC2b8hUBm0qJQCYMzTC9NFtn/E0dTHSfJALU="; + }) + (fetchpatch { + name = "fix-anno-grm-on-darwin.patch"; + url = "https://github.com/ACEnglish/truvari/commit/31416552008a506204ed4e2add55474f10392357.patch"; + hash = "sha256-42u0ewZU38GCoSfff+XQFv9hEFeO3WlJufTHcl6vkN4="; + }) + ]; + postPatch = '' substituteInPlace setup.py \ --replace "rich==" "rich>=" |