sratoolkit: 2.11.3 -> 3.1.1

1 files changed, 7 insertions, 20 deletions

diff --git a/pkgs/applications/science/biology/sratoolkit/default.nix b/pkgs/applications/science/biology/sratoolkit/default.nix
index 62c21a23eb66..6d9b3dbe511a 100644
--- a/pkgs/applications/science/biology/sratoolkit/default.nix
+++ b/pkgs/applications/science/biology/sratoolkit/default.nix
@@ -7,26 +7,13 @@
 , bzip2
 }:
 
-
-let
-  libidn11 = libidn.overrideAttrs (old: {
-    pname = "libidn";
-    version = "1.34";
-    src = fetchurl {
-      url = "mirror://gnu/libidn/libidn-1.34.tar.gz";
-      sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p";
-    };
-  });
-
-in
-
-stdenv.mkDerivation rec {
+stdenv.mkDerivation (finalAttrs: {
   pname = "sratoolkit";
-  version = "2.11.3";
+  version = "3.1.1";
 
   src = fetchurl {
-    url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${version}/sratoolkit.${version}-ubuntu64.tar.gz";
-    sha256 = "1590lc4cplxr3lhjqci8fjncy67imn2h14qd2l87chmhjh243qvx";
+    url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${finalAttrs.version}/sratoolkit.${finalAttrs.version}-ubuntu64.tar.gz";
+    hash = "sha256-tmjb+i6TBBdG0cMTaRJyrqS56lKykdevt51G3AU2dog=";
   };
 
   nativeBuildInputs = [
@@ -34,13 +21,13 @@ stdenv.mkDerivation rec {
   ];
 
   buildInputs = [
-    libidn11
+    libidn
     zlib
     bzip2
     stdenv.cc.cc.lib
   ];
 
-  sourceRoot = "sratoolkit.${version}-ubuntu64/bin";
+  sourceRoot = "sratoolkit.${finalAttrs.version}-ubuntu64/bin";
 
   installPhase = ''
     find -L . -executable -type f -! -name "*remote-fuser*" -exec install -m755 -D {} $out/bin/{} \;
@@ -53,4 +40,4 @@ stdenv.mkDerivation rec {
     maintainers = with maintainers; [ thyol ];
     platforms = [ "x86_64-linux" ];
   };
-}
+})