diff options
author | Pol Dellaiera <pol.dellaiera@protonmail.com> | 2024-05-11 23:06:03 +0200 |
---|---|---|
committer | GitHub <noreply@github.com> | 2024-05-11 23:06:03 +0200 |
commit | 9ba0818d53a4049fddc8fe47efac76c8b193b059 (patch) | |
tree | 181f586b6f40fbf764c42da4ffdbb850ed52675e | |
parent | 010103c926a0a9f2475f0d1ea30ba35893ca3203 (diff) | |
parent | bdf284928135fc1d9aedc2f2fb5f44afd043dbca (diff) |
Merge pull request #304881 from GaetanLepage/aesara
python311Packages.aesara: fix build
-rw-r--r-- | pkgs/development/python-modules/aeppl/default.nix | 29 | ||||
-rw-r--r-- | pkgs/development/python-modules/aesara/default.nix | 24 | ||||
-rw-r--r-- | pkgs/development/python-modules/augmax/default.nix | 17 |
3 files changed, 49 insertions, 21 deletions
diff --git a/pkgs/development/python-modules/aeppl/default.nix b/pkgs/development/python-modules/aeppl/default.nix index 1633be12bb97a..514e585d60338 100644 --- a/pkgs/development/python-modules/aeppl/default.nix +++ b/pkgs/development/python-modules/aeppl/default.nix @@ -1,29 +1,34 @@ { lib -, aesara , buildPythonPackage +, pythonOlder , fetchFromGitHub -, numdifftools +, setuptools +, aesara , numpy -, pytestCheckHook -, pythonOlder , scipy +, numdifftools +, pytestCheckHook }: buildPythonPackage rec { pname = "aeppl"; version = "0.1.5"; - format = "setuptools"; + pyproject = true; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "aesara-devs"; - repo = pname; + repo = "aeppl"; rev = "refs/tags/v${version}"; hash = "sha256-mqBbXwWJwQA2wSHuEdBeXQMfTIcgwYEjpq8AVmOjmHM="; }; - propagatedBuildInputs = [ + build-system = [ + setuptools + ]; + + dependencies = [ aesara numpy scipy @@ -47,6 +52,14 @@ buildPythonPackage rec { "test_initial_values" ]; + pytestFlagsArray = [ + # `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. + # It will be removed for Python >= 3.12. For older Python versions it will remain present. + "-Wignore::DeprecationWarning" + # Blas cannot be found, allow fallback to the numpy slower implementation + "-Wignore::UserWarning" + ]; + meta = with lib; { description = "Library for an Aesara-based PPL"; homepage = "https://github.com/aesara-devs/aeppl"; diff --git a/pkgs/development/python-modules/aesara/default.nix b/pkgs/development/python-modules/aesara/default.nix index 589799c1b848f..edf3f989ecbc1 100644 --- a/pkgs/development/python-modules/aesara/default.nix +++ b/pkgs/development/python-modules/aesara/default.nix @@ -16,6 +16,7 @@ , numba-scipy , numpy , pytestCheckHook +, pythonAtLeast , pythonOlder , scipy , typing-extensions @@ -24,9 +25,10 @@ buildPythonPackage rec { pname = "aesara"; version = "2.9.3"; - format = "pyproject"; + pyproject = true; - disabled = pythonOlder "3.8"; + # Python 3.12 is not supported: https://github.com/aesara-devs/aesara/issues/1520 + disabled = pythonOlder "3.8" || pythonAtLeast "3.12"; src = fetchFromGitHub { owner = "aesara-devs"; @@ -35,13 +37,13 @@ buildPythonPackage rec { hash = "sha256-aO0+O7Ts9phsV4ghunNolxfAruGBbC+tHjVkmFedcCI="; }; - nativeBuildInputs = [ + build-system = [ cython hatch-vcs hatchling ]; - propagatedBuildInputs = [ + dependencies = [ cons etuples filelock @@ -62,7 +64,8 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ - --replace "--durations=50" "" + --replace-fail "--durations=50" "" \ + --replace-fail "hatch-vcs >=0.3.0,<0.4.0" "hatch-vcs" ''; preBuild = '' @@ -81,12 +84,23 @@ buildPythonPackage rec { "tests/sparse/sandbox/" # JAX is not available on all platform and often broken "tests/link/jax/" + + # 2024-04-27: The current nixpkgs numba version is too recent and incompatible with aesara 2.9.3 + "tests/link/numba/" ]; disabledTests = [ # Disable all benchmark tests "test_scan_multiple_output" "test_logsumexp_benchmark" + + # TypeError: exceptions must be derived from Warning, not <class 'NoneType'> + "test_api_deprecation_warning" + # AssertionError: assert ['Elemwise{Co..._i{0} 0', ...] == ['Elemwise{Co..._i{0} 0', ...] + # At index 3 diff: '| |Gemv{inplace} d={0: [0]} 2' != '| |CGemv{inplace} d={0: [0]} 2' + "test_debugprint" + # ValueError: too many values to unpack (expected 3) + "test_ExternalCOp_c_code_cache_version" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/augmax/default.nix b/pkgs/development/python-modules/augmax/default.nix index 2ab159cfc6f8d..879bffb8a0d0a 100644 --- a/pkgs/development/python-modules/augmax/default.nix +++ b/pkgs/development/python-modules/augmax/default.nix @@ -1,6 +1,6 @@ { buildPythonPackage , einops -, fetchFromGitHub +, fetchPypi , jax , jaxlib , lib @@ -10,16 +10,17 @@ buildPythonPackage rec { pname = "augmax"; - version = "0.3.1"; + version = "0.3.2"; pyproject = true; disbaled = pythonOlder "3.6"; - src = fetchFromGitHub { - owner = "khdlr"; - repo = "augmax"; - rev = "refs/tags/v${version}"; - hash = "sha256-hDNNoE7KVaH3jrXZA4A8f0UoQJPl6KHA3XwMc3Ccohk="; + # Using fetchPypi because the latest version was not tagged on GitHub. + # Switch back to fetchFromGitHub when a tag will be available + # https://github.com/khdlr/augmax/issues/8 + src = fetchPypi { + inherit pname version; + hash = "sha256-pf1DTaHA7D+s2rqwwGYlJrJOI7fok+WOvOCtZhOOGHo="; }; nativeBuildInputs = [ @@ -37,7 +38,7 @@ buildPythonPackage rec { meta = with lib; { description = "Efficiently Composable Data Augmentation on the GPU with Jax"; homepage = "https://github.com/khdlr/augmax"; - changelog = "https://github.com/khdlr/augmax/blob/${src.rev}/CHANGELOG.md"; + changelog = "https://github.com/khdlr/augmax/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ samuela ]; }; |