diff options
| author | github-actions[bot] | 2024-08-13 06:01:20 +0000 |
|---|---|---|
| committer | GitHub | 2024-08-13 06:01:20 +0000 |
| commit | bf227f2f745366a1329fbe61b409bd5e71d0c6cc (patch) | |
| tree | 84395f7b65696f7bcdf578c5a2f6609e23dc07ce /doc | |
| parent | f8ebe241590b6f26ece294c1c59b9f3a5e5bf078 (diff) | |
| parent | a709e7cb7c99dac3d9a478a65bc5eb3775cd356e (diff) | |
Merge master into staging-next
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/languages-frameworks/r.section.md | 23 |
1 files changed, 13 insertions, 10 deletions
diff --git a/doc/languages-frameworks/r.section.md b/doc/languages-frameworks/r.section.md index ad0fb10987c9..d25c5e848232 100644 --- a/doc/languages-frameworks/r.section.md +++ b/doc/languages-frameworks/r.section.md @@ -104,24 +104,27 @@ directory and executed as follows: ```bash nix-shell generate-shell.nix -Rscript generate-r-packages.R cran > cran-packages.nix.new -mv cran-packages.nix.new cran-packages.nix +Rscript generate-r-packages.R cran > cran-packages.json.new +mv cran-packages.json.new cran-packages.json -Rscript generate-r-packages.R bioc > bioc-packages.nix.new -mv bioc-packages.nix.new bioc-packages.nix +Rscript generate-r-packages.R bioc > bioc-packages.json.new +mv bioc-packages.json.new bioc-packages.json -Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.nix.new -mv bioc-annotation-packages.nix.new bioc-annotation-packages.nix +Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.json.new +mv bioc-annotation-packages.json.new bioc-annotation-packages.json -Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.nix.new -mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix +Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.json.new +mv bioc-experiment-packages.json.new bioc-experiment-packages.json ``` -`generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefore +`generate-r-packages.R <repo>` reads `<repo>-packages.json`, therefore the renaming. +The contents of a generated `*-packages.json` file will be used to +create a package derivation for each R package listed in the file. + Some packages require overrides to specify external dependencies or other patches and special requirements. These overrides are specified in the -`pkgs/development/r-modules/default.nix` file. As the `*-packages.nix` +`pkgs/development/r-modules/default.nix` file. As the `*-packages.json` contents are automatically generated it should not be edited and broken builds should be addressed using overrides. |