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| author | Alexis Praga <alexis.praga@free.fr> | 2023-11-12 21:50:35 +0100 |
|---|---|---|
| committer | Alexis Praga <alexis.praga@free.fr> | 2023-11-21 23:16:12 +0100 |
| commit | cc4bd303877c3eb2db186ca214712f54dbe69bae (patch) | |
| tree | 62886e357bb414ab972ab43906b9eeb64b4d997e /pkgs/applications/science/biology/kent | |
| parent | 2b2c6f4c287c6107acb9b7b0c2b00dd53bf27b44 (diff) | |
perlPackages.BioBigfile: init at 1.07
Perl interface to manipulate BigWig and BigBeg files (for genomics) This will be used to package VEP : uttps://www.ensembl.org/info/docs/tools/vep/script/vep_download.html For that, only kent version 335 works at the moment. For this commit, 2 commits for kent are needed - e027a5d8368a053e231 : packaging kent header - 2b2c6f4c287c6107acb : enabling patches in kent
Diffstat (limited to 'pkgs/applications/science/biology/kent')
| -rw-r--r-- | pkgs/applications/science/biology/kent/kent-utils.patch | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/kent/kent-utils.patch b/pkgs/applications/science/biology/kent/kent-utils.patch new file mode 100644 index 0000000000000..be33125de5fbc --- /dev/null +++ b/pkgs/applications/science/biology/kent/kent-utils.patch @@ -0,0 +1,27 @@ +--- ./src/utils/bigWigCat/makefile.orig 2023-03-27 14:03:01.585896516 +0000 ++++ ./src/utils/bigWigCat/makefile 2023-03-27 14:03:27.716180479 +0000 +@@ -1,3 +1,4 @@ + kentSrc = ../.. + A = bigWigCat + include $(kentSrc)/inc/userApp.mk ++L += -lz + +--- ./src/utils/pslLiftSubrangeBlat/makefile.orig 1970-01-01 00:00:01.000000000 +0000 ++++ ./src/utils/pslLiftSubrangeBlat/makefile 2023-03-27 14:36:59.044600213 +0000 +@@ -3,7 +3,7 @@ + preMyLibs += ../../lib/$(MACHTYPE)/jkhgap.a + include $(kentSrc)/inc/userApp.mk + HG_INC += -I../../hg/inc +-L += $(MYSQLLIBS) -lm ++L += $(MYSQLLIBS) -lm -lz + + test:: + cd tests && ${MAKE} test + +--- ./src/utils/bigWigCorrelate/makefile.orig 2023-03-27 14:36:23.117545553 +0000 ++++ ./src/utils/bigWigCorrelate/makefile 2023-03-27 14:36:33.854328176 +0000 +@@ -1,3 +1,4 @@ + kentSrc = ../.. + A = bigWigCorrelate + include $(kentSrc)/inc/userApp.mk ++L += -lz |