about summary refs log tree commit diff
path: root/pkgs/applications/science/biology/paml
diff options
context:
space:
mode:
authorSergei Trofimovich <slyich@gmail.com>2022-05-22 20:22:55 +0100
committerSergei Trofimovich <slyich@gmail.com>2022-05-22 20:23:12 +0100
commit8cba3775d82fe224b7b379a1913369d49ffedc44 (patch)
tree90b6059cc100ad9d3db42500ae7ed260ef28a95c /pkgs/applications/science/biology/paml
parente04ca593173bc086a1fa195258090aaab9279f1f (diff)
paml: add -fcommon workaround
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
      /build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
Diffstat (limited to 'pkgs/applications/science/biology/paml')
-rw-r--r--pkgs/applications/science/biology/paml/default.nix6
1 files changed, 6 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/paml/default.nix b/pkgs/applications/science/biology/paml/default.nix
index d288edca9330a..66ba244cacd68 100644
--- a/pkgs/applications/science/biology/paml/default.nix
+++ b/pkgs/applications/science/biology/paml/default.nix
@@ -8,6 +8,12 @@ stdenv.mkDerivation rec {
     sha256 = "0qflf3i27x6jwks3c6q560m1q8r043ja96syah145113iz5wdalp";
   };
 
+  # Workaround build failure on -fno-common toolchains like upstream
+  # gcc-10. Otherwise build fails as:
+  #   ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
+  #     /build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
+  NIX_CFLAGS_COMPILE = "-fcommon";
+
   preBuild = ''
     cd ./src/
   '';