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author | Sebastián Mancilla <smancill@smancill.dev> | 2023-05-21 21:30:33 -0400 |
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committer | Sebastián Mancilla <smancill@smancill.dev> | 2023-05-21 22:34:01 -0400 |
commit | 70b3662a675b2a439eae1251532e4fe9daeb31ae (patch) | |
tree | a826310e7fb90026829703e325a2f6746f48eadd /pkgs/applications/science/machine-learning | |
parent | 61fc2d2c898a7d84936f53058239aa5af24c5f16 (diff) |
shogun: disable broken test
Shogun has been broken for a while [0]. Looks like the latest update to openblas, by f07a0615ea8 (openblas: 0.3.20 -> 0.3.21, 2022-08-10), broke the `libshogun-mathematics_lapack` example. It calculates the eigenvectors for a matrix, but the assertions now fail: compute_eigenvectors A=[ [ -0.500000000000000111, 0.707106781186547351, 0.5], [ 0.707106781186547351, 1.04083408558608426e-16, 0.707106781186547129], [ -0.499999999999999722, -0.707106781186547462, 0.5] ] eigenvalues=[-1.41421356237309492,1.04083408558608426e-17,1.41421356237309492] terminate called after throwing an instance of 'shogun::ShogunException' The darwin build output shows a bit more detail: assertion is_equal(A(0,0), 0.5, eps) failed in void test_ev() file /tmp/nix-build-shogun-6.1.4.drv-0/source/examples/undocumented/libshogun/mathematics_lapack.cpp line 49 Disable the test to fix the build, although the results seem "correct". It appears that openblas now calculates values with slightly less precision, thus the assertion fails due to the expected epsilon. [0]: https://hydra.nixos.org/build/194671473
Diffstat (limited to 'pkgs/applications/science/machine-learning')
-rw-r--r-- | pkgs/applications/science/machine-learning/shogun/default.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix index fdaec82490dbb..d25bc06385ea9 100644 --- a/pkgs/applications/science/machine-learning/shogun/default.nix +++ b/pkgs/applications/science/machine-learning/shogun/default.nix @@ -136,6 +136,8 @@ stdenv.mkDerivation rec { excludeTestsRegex = lib.concatStringsSep "|" [ # sporadic segfault "TrainedModelSerialization" + # broken by openblas 0.3.21 + "mathematics_lapack" # these take too long on CI "evaluation_cross_validation" "modelselection_combined_kernel" |