diff options
author | Jan Tojnar <jtojnar@gmail.com> | 2021-05-16 15:34:51 +0200 |
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committer | Jan Tojnar <jtojnar@gmail.com> | 2021-05-16 15:34:51 +0200 |
commit | 684991c6965ed6310b06cfabcd167525448c7cda (patch) | |
tree | f2787e44e17b9213508ed0a87a82d18defa51a13 /pkgs/applications/science | |
parent | e4d975931498a1b5b5a2a92506de4f26b02c49d2 (diff) | |
parent | c58b97674b12d238d9d21e8ab9ee9d7a6b81ae8f (diff) |
Merge branch 'master' into staging-next
- Thunderbird 68 has been dropped on master. - gccCrossLibcStdenv has been factored out on staging-next in all-packages.nix, while the file has been re-formatted on master.
Diffstat (limited to 'pkgs/applications/science')
3 files changed, 52 insertions, 15 deletions
diff --git a/pkgs/applications/science/biology/bowtie2/default.nix b/pkgs/applications/science/biology/bowtie2/default.nix index 715f5bb8bfa68..4f5872de07dd9 100644 --- a/pkgs/applications/science/biology/bowtie2/default.nix +++ b/pkgs/applications/science/biology/bowtie2/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "bowtie2"; - version = "2.4.2"; + version = "2.4.3"; src = fetchFromGitHub { owner = "BenLangmead"; repo = pname; rev = "v${version}"; - sha256 = "11apzq7l1lk3yxw97g9dfr0gwnvfh58x6apifcblgd66gbip3y1y"; + sha256 = "sha256-uEKTB8935YY6lpXv2tJBQ1hrRk63vALLQb6SUXsVyhQ="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/science/electronics/pulseview/default.nix b/pkgs/applications/science/electronics/pulseview/default.nix index 00c830fcd3370..e9496ce60c229 100644 --- a/pkgs/applications/science/electronics/pulseview/default.nix +++ b/pkgs/applications/science/electronics/pulseview/default.nix @@ -1,4 +1,4 @@ -{ mkDerivation, lib, fetchurl, pkg-config, cmake, glib, boost, libsigrok +{ mkDerivation, lib, fetchurl, fetchpatch, pkg-config, cmake, glib, boost, libsigrok , libsigrokdecode, libserialport, libzip, udev, libusb1, libftdi1, glibmm , pcre, librevisa, python3, qtbase, qtsvg }: @@ -20,6 +20,15 @@ mkDerivation rec { qtbase qtsvg ]; + patches = [ + # Allow building with glib 2.68 + # PR at https://github.com/sigrokproject/pulseview/pull/39 + (fetchpatch { + url = "https://github.com/sigrokproject/pulseview/commit/fb89dd11f2a4a08b73c498869789e38677181a8d.patch"; + sha256 = "07ifsis9jlc0jjp2d11f7hvw9kaxcbk0a57h2m4xsv1d7vzl9yfh"; + }) + ]; + meta = with lib; { description = "Qt-based LA/scope/MSO GUI for sigrok (a signal analysis software suite)"; homepage = "https://sigrok.org/"; diff --git a/pkgs/applications/science/math/eukleides/default.nix b/pkgs/applications/science/math/eukleides/default.nix index 5f7fe58465d00..fe498fdbd8a1b 100644 --- a/pkgs/applications/science/math/eukleides/default.nix +++ b/pkgs/applications/science/math/eukleides/default.nix @@ -1,26 +1,54 @@ -{ lib, stdenv, fetchurl, bison, flex, texinfo, readline, texLive }: +{ lib, stdenv, fetchurl, bison, flex, makeWrapper, texinfo, readline, texLive }: -let - name = "eukleides"; +lib.fix (eukleides: stdenv.mkDerivation rec { + pname = "eukleides"; version = "1.5.4"; -in -stdenv.mkDerivation { - name = "${name}-${version}"; src = fetchurl { - url = "http://www.eukleides.org/files/${name}-${version}.tar.bz2"; + url = "http://www.eukleides.org/files/${pname}-${version}.tar.bz2"; sha256 = "0s8cyh75hdj89v6kpm3z24i48yzpkr8qf0cwxbs9ijxj1i38ki0q"; }; - buildInputs = [bison flex texinfo readline texLive]; + nativeBuildInputs = [ bison flex texinfo makeWrapper ]; - preConfigure = "sed -i 's/ginstall-info/install-info/g' doc/Makefile"; - installPhase = "mkdir -p $out/bin ; make PREFIX=$out install"; + buildInputs = [ readline texLive ]; + + preConfigure = '' + substituteInPlace Makefile \ + --replace mktexlsr true + + substituteInPlace doc/Makefile \ + --replace ginstall-info install-info + + substituteInPlace Config \ + --replace '/usr/local' "$out" \ + --replace '$(SHARE_DIR)/texmf' "$tex" + ''; + + preInstall = '' + mkdir -p $out/bin + ''; + + postInstall = '' + wrapProgram $out/bin/euktoeps \ + --set-default TEXINPUTS : \ + --prefix TEXINPUTS : "$tex/tex/latex/eukleides" \ + --prefix PATH : "${texLive}/bin" + wrapProgram $out/bin/euktopdf \ + --set-default TEXINPUTS : \ + --prefix TEXINPUTS : "$tex/tex/latex/eukleides" \ + --prefix PATH : "${texLive}/bin" + ''; + + outputs = [ "out" "doc" "tex" ]; + + passthru.tlType = "run"; + passthru.pkgs = [ eukleides.tex ]; meta = { description = "Geometry Drawing Language"; homepage = "http://www.eukleides.org/"; - license = lib.licenses.gpl2; + license = lib.licenses.gpl3Plus; longDescription = '' Eukleides is a computer language devoted to elementary plane @@ -34,4 +62,4 @@ stdenv.mkDerivation { platforms = lib.platforms.linux; maintainers = [ lib.maintainers.peti ]; }; -} +}) |