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| author | Robert Scott <code@humanleg.org.uk> | 2023-04-13 00:10:42 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-04-13 00:10:42 +0100 |
| commit | 2107f7de60045faadd9a503626912a3a7e48ebea (patch) | |
| tree | 62bda639c3f1b640b4f575b5f9ad2ff078a7d5fa /pkgs/applications/science | |
| parent | 46d97242e2d67dcf7b4587386227d4ab9b28589c (diff) | |
| parent | d69d242b7bcaa8bbadc87a68be84eb5719e35585 (diff) | |
Merge pull request #225865 from bzizou/samtools
samtools: 1.13 -> 1.17
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/samtools/default.nix | 13 |
1 files changed, 2 insertions, 11 deletions
diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index c72dd1b19077d..5e18d5ead58a5 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -2,22 +2,13 @@ stdenv.mkDerivation rec { pname = "samtools"; - version = "1.13"; + version = "1.17"; src = fetchurl { url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA="; + sha256 = "sha256-Ot85C2KCGf1kCPFGAqTEqpDmPhizldrXIqtRlDiipyk"; }; - patches = [ - # Pull upstream patch for ncurses-6.3 support - (fetchpatch { - name = "ncurses-6.3.patch"; - url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch"; - sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838="; - }) - ]; - # tests require `bgzip` from the htslib package nativeCheckInputs = [ htslib ]; |