diff options
| author | Theodore Ni <3806110+tjni@users.noreply.github.com> | 2023-08-11 14:45:45 -0700 |
|---|---|---|
| committer | Theodore Ni <3806110+tjni@users.noreply.github.com> | 2023-08-11 14:45:45 -0700 |
| commit | 851d2f6b95cef3d6e3bb9a919b4143fdd457d700 (patch) | |
| tree | 4ca2b3ed5890e1de2cbe9b6a41eec7f8205d133b /pkgs/applications/science | |
| parent | 0a088cacf85bb884717f42d28233deb2dd05d042 (diff) | |
macs2: 2.2.8 -> 2.2.9.1
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/macs2/default.nix | 31 |
1 files changed, 20 insertions, 11 deletions
diff --git a/pkgs/applications/science/biology/macs2/default.nix b/pkgs/applications/science/biology/macs2/default.nix index 934da2e8ab611..8884d41d90647 100644 --- a/pkgs/applications/science/biology/macs2/default.nix +++ b/pkgs/applications/science/biology/macs2/default.nix @@ -1,31 +1,40 @@ -{ lib, python3, fetchPypi }: +{ lib, python3, fetchpatch, fetchPypi }: python3.pkgs.buildPythonPackage rec { pname = "macs2"; - version = "2.2.8"; + version = "2.2.9.1"; format = "pyproject"; src = fetchPypi { pname = lib.toUpper pname; inherit version; - hash = "sha256-KgpDasidj4yUoeQQaQA3dg5eN5Ka1xnFRpbnTvhKmOA="; + hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY="; }; - postPatch = '' - # prevent setup.py from installing numpy - substituteInPlace setup.py \ - --replace "subprocess.call([sys.executable, \"-m\", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd)" "0" - ''; + patches = [ + # https://github.com/macs3-project/MACS/pull/590 + (fetchpatch { + name = "remove-pip-build-dependency.patch"; + url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch"; + hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo="; + }) + ]; nativeBuildInputs = with python3.pkgs; [ cython + numpy setuptools + wheel + ]; + + propagatedBuildInputs = with python3.pkgs; [ + numpy ]; - propagatedBuildInputs = with python3.pkgs; [ numpy ]; + __darwinAllowLocalNetworking = true; - nativeCheckInputs = [ - python3.pkgs.unittestCheckHook + nativeCheckInputs = with python3.pkgs; [ + unittestCheckHook ]; unittestFlagsArray = [ |