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| author | Zitrone <74491719+quantenzitrone@users.noreply.github.com> | 2024-06-16 23:18:13 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2024-06-16 20:18:13 -0300 |
| commit | 63b875e099c14114b0dfdb21401a04de62903222 (patch) | |
| tree | ee54f9276ef8d98064169d68e40dea34420513a7 /pkgs/by-name/sp/spades/package.nix | |
| parent | 80f3f19e1edb6c373c51764779544f89cd24ca73 (diff) | |
SPAdes: refactor
Diffstat (limited to 'pkgs/by-name/sp/spades/package.nix')
| -rw-r--r-- | pkgs/by-name/sp/spades/package.nix | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/pkgs/by-name/sp/spades/package.nix b/pkgs/by-name/sp/spades/package.nix new file mode 100644 index 0000000000000..9a60ee499a645 --- /dev/null +++ b/pkgs/by-name/sp/spades/package.nix @@ -0,0 +1,46 @@ +{ + lib, + stdenv, + fetchurl, + zlib, + bzip2, + cmake, + python3, +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "spades"; + version = "3.15.5"; + + src = fetchurl { + url = "https://github.com/ablab/spades/releases/download/v${finalAttrs.version}/SPAdes-${finalAttrs.version}.tar.gz"; + hash = "sha256-FVw2QNVx8uexmgUDHR/Q0ZvYLfeF04hw+5O9JBsSu/o="; + }; + sourceRoot = "SPAdes-${finalAttrs.version}/src"; + + env.CXXFLAGS = toString [ + # GCC 13: error: 'uint32_t' does not name a type + "-include cstdint" + ]; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ + zlib + bzip2 + python3 + ]; + + doCheck = true; + + meta = { + description = "St. Petersburg genome assembler, a toolkit for assembling and analyzing sequencing data"; + license = lib.licenses.gpl2Only; + homepage = "http://ablab.github.io/spades"; + platforms = [ + "x86_64-linux" + "x86_64-darwin" + ]; + maintainers = with lib.maintainers; [ bzizou ]; + }; +}) |