diff options
| author | Justin Bedő <cu@cua0.org> | 2021-09-16 09:36:18 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-09-16 09:36:18 +0000 |
| commit | 29595eba1860303a6f99f9917c8eb078716b2975 (patch) | |
| tree | a21374dde0c1d6c62501f8ba33d2762620e84616 /pkgs/development/r-modules/generate-r-packages.R | |
| parent | b21caea1f088ca380bba38cd34827bc0931f96d0 (diff) | |
| parent | 96eb04ef7ad151d671050bfa87d76398cc56c297 (diff) | |
Merge pull request #127790 from PhDyellow/r_bioc_updater_revised
r-modules: R bioc updater revised
Diffstat (limited to 'pkgs/development/r-modules/generate-r-packages.R')
| -rwxr-xr-x | pkgs/development/r-modules/generate-r-packages.R | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index 1ac15ef79e79a..f656fdca0922d 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -1,9 +1,16 @@ #!/usr/bin/env Rscript library(data.table) library(parallel) +library(BiocManager) cl <- makeCluster(10) -biocVersion <- 3.12 +biocVersion <- BiocManager:::.version_map() +biocVersion <- biocVersion[biocVersion$R == getRversion()[, 1:2],c("Bioc", "BiocStatus")] +if ("release" %in% biocVersion$BiocStatus) { + biocVersion <- as.numeric(as.character(biocVersion[biocVersion$BiocStatus == "release", "Bioc"])) +} else { + biocVersion <- max(as.numeric(as.character(biocVersion$Bioc))) +} snapshotDate <- Sys.Date()-1 mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/") |