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author | Phil Dyer <phildyer@protonmail.com> | 2021-09-15 11:09:17 +1000 |
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committer | Phil Dyer <phildyer@protonmail.com> | 2021-09-15 11:09:17 +1000 |
commit | 29fdc0ce2d98641fc1ae0ce3057dbc7fd1bdd3d6 (patch) | |
tree | 5fa624e1bf1c302f847c7307cc841aa57b45ab62 /pkgs/development/r-modules/generate-r-packages.R | |
parent | 8a2ec31e224de9461390cdd03e5e0b0290cdad0b (diff) |
rPackages: autoset bioconductor ver to match R ver
BioConductor releases are tied to specific R releases. Updating the package set now automatically selects the correct version of bioconductor to match the current version of R.
Diffstat (limited to 'pkgs/development/r-modules/generate-r-packages.R')
-rwxr-xr-x | pkgs/development/r-modules/generate-r-packages.R | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index da9e0970b0f42..50b2d3b5f9ec8 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -1,9 +1,16 @@ #!/usr/bin/env Rscript library(data.table) library(parallel) +library(BiocManager) cl <- makeCluster(10) -biocVersion <- 3.12 +biocVersion <- BiocManager:::.version_map() +biocVersion <- biocVersion[biocVersion$R == getRversion()[, 1:2],c("Bioc", "BiocStatus")] +if ("release" %in% biocVersion$BiocStatus) { + biocVersion <- as.numeric(as.character(biocVersion[biocVersion$BiocStatus == "release", "Bioc"])) +} else { + biocVersion <- max(as.numeric(as.character(biocVersion$Bioc))) +} snapshotDate <- Sys.Date()-1 mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/") |