diff options
| author | Vladimír Čunát <vcunat@gmail.com> | 2017-03-07 21:59:32 +0100 |
|---|---|---|
| committer | Vladimír Čunát <vcunat@gmail.com> | 2017-03-07 21:59:32 +0100 |
| commit | b86b7c04a30856e15391df1f5e7c901ae350fe78 (patch) | |
| tree | 953fe308c0e11eed87d383c83b10e3c9cfd03989 /pkgs/development | |
| parent | 9eb2f4cb9ea7afb8f5c623bf0d4d0e22b8e8afec (diff) | |
| parent | ac0021ce53d2f9d8b26aa5374ccac1cc3e4b270d (diff) | |
Merge branch 'master' into staging
Diffstat (limited to 'pkgs/development')
74 files changed, 2647 insertions, 1426 deletions
diff --git a/pkgs/development/compilers/go/1.8.nix b/pkgs/development/compilers/go/1.8.nix new file mode 100644 index 0000000000000..00ec11abc47b6 --- /dev/null +++ b/pkgs/development/compilers/go/1.8.nix @@ -0,0 +1,170 @@ +{ stdenv, fetchFromGitHub, tzdata, iana_etc, go_bootstrap, runCommand, writeScriptBin +, perl, which, pkgconfig, patch, fetchpatch +, pcre, cacert +, Security, Foundation, bash }: + +let + + inherit (stdenv.lib) optional optionals optionalString; + + clangHack = writeScriptBin "clang" '' + #!${stdenv.shell} + exec ${stdenv.cc}/bin/clang "$@" 2> >(sed '/ld: warning:.*ignoring unexpected dylib file/ d' 1>&2) + ''; + + goBootstrap = runCommand "go-bootstrap" {} '' + mkdir $out + cp -rf ${go_bootstrap}/* $out/ + chmod -R u+w $out + find $out -name "*.c" -delete + cp -rf $out/bin/* $out/share/go/bin/ + ''; + +in + +stdenv.mkDerivation rec { + name = "go-${version}"; + version = "1.8"; + + src = fetchFromGitHub { + owner = "golang"; + repo = "go"; + rev = "go${version}"; + sha256 = "0plm11rqrqz7frwz0jjcm13x939yhny755ks1adxjzmsngln9prl"; + }; + + # perl is used for testing go vet + nativeBuildInputs = [ perl which pkgconfig patch ]; + buildInputs = [ pcre ] + ++ optionals stdenv.isLinux [ stdenv.glibc.out stdenv.glibc.static ]; + propagatedBuildInputs = optionals stdenv.isDarwin [ Security Foundation ]; + + hardeningDisable = [ "all" ]; + + prePatch = '' + patchShebangs ./ # replace /bin/bash + + # This source produces shell script at run time, + # and thus it is not corrected by patchShebangs. + substituteInPlace misc/cgo/testcarchive/carchive_test.go \ + --replace '#!/usr/bin/env bash' '#!${stdenv.shell}' + + # Disabling the 'os/http/net' tests (they want files not available in + # chroot builds) + rm src/net/{listen,parse}_test.go + rm src/syscall/exec_linux_test.go + + # !!! substituteInPlace does not seems to be effective. + # The os test wants to read files in an existing path. Just don't let it be /usr/bin. + sed -i 's,/usr/bin,'"`pwd`", src/os/os_test.go + sed -i 's,/bin/pwd,'"`type -P pwd`", src/os/os_test.go + # Disable the unix socket test + sed -i '/TestShutdownUnix/areturn' src/net/net_test.go + # Disable the hostname test + sed -i '/TestHostname/areturn' src/os/os_test.go + # ParseInLocation fails the test + sed -i '/TestParseInSydney/areturn' src/time/format_test.go + # Remove the api check as it never worked + sed -i '/src\/cmd\/api\/run.go/ireturn nil' src/cmd/dist/test.go + # Remove the coverage test as we have removed this utility + sed -i '/TestCoverageWithCgo/areturn' src/cmd/go/go_test.go + # Remove the timezone naming test + sed -i '/TestLoadFixed/areturn' src/time/time_test.go + + sed -i 's,/etc/protocols,${iana_etc}/etc/protocols,' src/net/lookup_unix.go + sed -i 's,/etc/services,${iana_etc}/etc/services,' src/net/port_unix.go + + # Disable cgo lookup tests not works, they depend on resolver + rm src/net/cgo_unix_test.go + + '' + optionalString stdenv.isLinux '' + sed -i 's,/usr/share/zoneinfo/,${tzdata}/share/zoneinfo/,' src/time/zoneinfo_unix.go + '' + optionalString stdenv.isDarwin '' + + # Disabling `format_test.go` because it fails on Darwin for an + # unknown reason see: https://github.com/NixOS/nixpkgs/pull/23122#issuecomment-282188727 + rm src/time/format_test.go + + substituteInPlace src/race.bash --replace \ + "sysctl machdep.cpu.extfeatures | grep -qv EM64T" true + sed -i 's,strings.Contains(.*sysctl.*,true {,' src/cmd/dist/util.go + sed -i 's,"/etc","'"$TMPDIR"'",' src/os/os_test.go + sed -i 's,/_go_os_test,'"$TMPDIR"'/_go_os_test,' src/os/path_test.go + + sed -i '/TestChdirAndGetwd/areturn' src/os/os_test.go + sed -i '/TestRead0/areturn' src/os/os_test.go + sed -i '/TestNohup/areturn' src/os/signal/signal_test.go + sed -i '/TestCurrent/areturn' src/os/user/user_test.go + sed -i '/TestSystemRoots/areturn' src/crypto/x509/root_darwin_test.go + + sed -i '/TestGoInstallRebuildsStalePackagesInOtherGOPATH/areturn' src/cmd/go/go_test.go + sed -i '/TestBuildDashIInstallsDependencies/areturn' src/cmd/go/go_test.go + + sed -i '/TestDisasmExtld/areturn' src/cmd/objdump/objdump_test.go + + sed -i 's/unrecognized/unknown/' src/cmd/link/internal/ld/lib.go + sed -i 's/unrecognized/unknown/' src/cmd/go/build.go + + touch $TMPDIR/group $TMPDIR/hosts $TMPDIR/passwd + + sed -i '1 a\exit 0' misc/cgo/errors/test.bash + ''; + + patches = + [ ./remove-tools-1.8.patch + ./cacert-1.8.patch + ./creds-test.patch + ./remove-test-pie-1.8.patch + ]; + + SSL_CERT_FILE = "${cacert}/etc/ssl/certs/ca-bundle.crt"; + + GOOS = if stdenv.isDarwin then "darwin" else "linux"; + GOARCH = if stdenv.isDarwin then "amd64" + else if stdenv.system == "i686-linux" then "386" + else if stdenv.system == "x86_64-linux" then "amd64" + else if stdenv.isArm then "arm" + else throw "Unsupported system"; + GOARM = optionalString (stdenv.system == "armv5tel-linux") "5"; + GO386 = 387; # from Arch: don't assume sse2 on i686 + CGO_ENABLED = 1; + GOROOT_BOOTSTRAP = "${goBootstrap}/share/go"; + + # The go build actually checks for CC=*/clang and does something different, so we don't + # just want the generic `cc` here. + CC = if stdenv.isDarwin then "clang" else "cc"; + + configurePhase = '' + mkdir -p $out/share/go/bin + export GOROOT=$out/share/go + export GOBIN=$GOROOT/bin + export PATH=$GOBIN:$PATH + ''; + + postConfigure = optionalString stdenv.isDarwin '' + export PATH=${clangHack}/bin:$PATH + ''; + + installPhase = '' + cp -r . $GOROOT + ( cd $GOROOT/src && ./all.bash ) + ''; + + preFixup = '' + rm -r $out/share/go/pkg/bootstrap + ln -s $out/share/go/bin $out/bin + ''; + + setupHook = ./setup-hook.sh; + + disallowedReferences = [ go_bootstrap ]; + + meta = with stdenv.lib; { + branch = "1.8"; + homepage = http://golang.org/; + description = "The Go Programming language"; + license = licenses.bsd3; + maintainers = with maintainers; [ cstrahan wkennington ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/compilers/go/cacert-1.8.patch b/pkgs/development/compilers/go/cacert-1.8.patch new file mode 100644 index 0000000000000..bf44e123711fa --- /dev/null +++ b/pkgs/development/compilers/go/cacert-1.8.patch @@ -0,0 +1,80 @@ +diff --git a/src/crypto/x509/root_cgo_darwin.go b/src/crypto/x509/root_cgo_darwin.go +index a4b33c7..9700b75 100644 +--- a/src/crypto/x509/root_cgo_darwin.go ++++ b/src/crypto/x509/root_cgo_darwin.go +@@ -151,11 +151,20 @@ int FetchPEMRoots(CFDataRef *pemRoots) { + import "C" + import ( + "errors" ++ "io/ioutil" ++ "os" + "unsafe" + ) + + func loadSystemRoots() (*CertPool, error) { + roots := NewCertPool() ++ if file := os.Getenv("SSL_CERT_FILE"); file != "" { ++ data, err := ioutil.ReadFile(file) ++ if err == nil { ++ roots.AppendCertsFromPEM(data) ++ return roots, nil ++ } ++ } + + var data C.CFDataRef = nil + err := C.FetchPEMRoots(&data) +diff --git a/src/crypto/x509/root_darwin.go b/src/crypto/x509/root_darwin.go +index 66cdb5e..bb28036 100644 +--- a/src/crypto/x509/root_darwin.go ++++ b/src/crypto/x509/root_darwin.go +@@ -61,17 +61,25 @@ func execSecurityRoots() (*CertPool, error) { + println(fmt.Sprintf("crypto/x509: %d certs have a trust policy", len(hasPolicy))) + } + +- cmd := exec.Command("/usr/bin/security", "find-certificate", "-a", "-p", "/System/Library/Keychains/SystemRootCertificates.keychain") +- data, err := cmd.Output() +- if err != nil { +- return nil, err +- } +- + var ( + mu sync.Mutex + roots = NewCertPool() + numVerified int // number of execs of 'security verify-cert', for debug stats + ) + ++ if file := os.Getenv("SSL_CERT_FILE"); file != "" { ++ data, err := ioutil.ReadFile(file) ++ if err == nil { ++ roots.AppendCertsFromPEM(data) ++ return roots, nil ++ } ++ } ++ ++ cmd := exec.Command("/usr/bin/security", "find-certificate", "-a", "-p", "/System/Library/Keychains/SystemRootCertificates.keychain") ++ data, err := cmd.Output() ++ if err != nil { ++ return nil, err ++ } ++ + blockCh := make(chan *pem.Block) + var wg sync.WaitGroup +diff --git a/src/crypto/x509/root_unix.go b/src/crypto/x509/root_unix.go +index 7bcb3d6..3986e1a 100644 +--- a/src/crypto/x509/root_unix.go ++++ b/src/crypto/x509/root_unix.go +@@ -24,6 +24,14 @@ func (c *Certificate) systemVerify(opts *VerifyOptions) (chains [][]*Certificate + + func loadSystemRoots() (*CertPool, error) { + roots := NewCertPool() ++ if file := os.Getenv("SSL_CERT_FILE"); file != "" { ++ data, err := ioutil.ReadFile(file) ++ if err == nil { ++ roots.AppendCertsFromPEM(data) ++ return roots, nil ++ } ++ } ++ + var firstErr error + for _, file := range certFiles { + data, err := ioutil.ReadFile(file) diff --git a/pkgs/development/compilers/go/remove-test-pie-1.8.patch b/pkgs/development/compilers/go/remove-test-pie-1.8.patch new file mode 100644 index 0000000000000..d09e143c74c19 --- /dev/null +++ b/pkgs/development/compilers/go/remove-test-pie-1.8.patch @@ -0,0 +1,23 @@ +diff --git a/src/cmd/dist/test.go b/src/cmd/dist/test.go +index c51dcea..8fbec5e 100644 +--- a/src/cmd/dist/test.go ++++ b/src/cmd/dist/test.go +@@ -461,17 +461,5 @@ func (t *tester) registerTests() { + }) + } + +- // Test internal linking of PIE binaries where it is supported. +- if t.goos == "linux" && t.goarch == "amd64" { +- t.tests = append(t.tests, distTest{ +- name: "pie_internal", +- heading: "internal linking of -buildmode=pie", +- fn: func(dt *distTest) error { +- t.addCmd(dt, "src", "go", "test", "reflect", "-short", "-buildmode=pie", "-ldflags=-linkmode=internal", t.timeout(60), t.tags(), t.runFlag("")) +- return nil +- }, +- }) +- } +- + // sync tests + t.tests = append(t.tests, distTest{ + name: "sync_cpu", \ No newline at end of file diff --git a/pkgs/development/compilers/go/remove-tools-1.8.patch b/pkgs/development/compilers/go/remove-tools-1.8.patch new file mode 100644 index 0000000000000..b53e48e1a515d --- /dev/null +++ b/pkgs/development/compilers/go/remove-tools-1.8.patch @@ -0,0 +1,35 @@ +diff --git a/src/go/build/build.go b/src/go/build/build.go +index 9706b8b..f250751 100644 +--- a/src/go/build/build.go ++++ b/src/go/build/build.go +@@ -1513,7 +1513,7 @@ func init() { + } + + // ToolDir is the directory containing build tools. +-var ToolDir = filepath.Join(runtime.GOROOT(), "pkg/tool/"+runtime.GOOS+"_"+runtime.GOARCH) ++var ToolDir = runtime.GOTOOLDIR() + + // IsLocalImport reports whether the import path is + // a local import path, like ".", "..", "./foo", or "../foo". +diff --git a/src/runtime/extern.go b/src/runtime/extern.go +index 441dcd9..a50277e 100644 +--- a/src/runtime/extern.go ++++ b/src/runtime/extern.go +@@ -230,6 +230,17 @@ func GOROOT() string { + return sys.DefaultGoroot + } + ++// GOTOOLDIR returns the root of the Go tree. ++// It uses the GOTOOLDIR environment variable, if set, ++// or else the root used during the Go build. ++func GOTOOLDIR() string { ++ s := gogetenv("GOTOOLDIR") ++ if s != "" { ++ return s ++ } ++ return GOROOT() + "/pkg/tool/" + GOOS + "_" + GOARCH ++} ++ + // Version returns the Go tree's version string. + // It is either the commit hash and date at the time of the build or, + // when possible, a release tag like "go1.3". diff --git a/pkgs/development/compilers/hhvm/default.nix b/pkgs/development/compilers/hhvm/default.nix index e6f98a1219461..f0f3a130ef68d 100644 --- a/pkgs/development/compilers/hhvm/default.nix +++ b/pkgs/development/compilers/hhvm/default.nix @@ -33,6 +33,11 @@ stdenv.mkDerivation rec { # work around broken build system NIX_CFLAGS_COMPILE = "-I${freetype.dev}/include/freetype2"; + # the cmake package does not handle absolute CMAKE_INSTALL_INCLUDEDIR correctly + # (setting it to an absolute path causes include files to go to $out/$out/include, + # because the absolute path is interpreted with root at $out). + cmakeFlags = "-DCMAKE_INSTALL_INCLUDEDIR=include"; + prePatch = '' substituteInPlace hphp/util/generate-buildinfo.sh \ --replace /bin/bash ${stdenv.shell} diff --git a/pkgs/development/compilers/solc/default.nix b/pkgs/development/compilers/solc/default.nix index 354c8f4e5f57e..ecf975bf76f16 100644 --- a/pkgs/development/compilers/solc/default.nix +++ b/pkgs/development/compilers/solc/default.nix @@ -1,4 +1,9 @@ -{ stdenv, fetchgit, boost, cmake, jsoncpp }: +{ stdenv, fetchzip, fetchgit, boost, cmake }: + +let jsoncpp = fetchzip { + url = https://github.com/open-source-parsers/jsoncpp/archive/1.7.7.tar.gz; + sha256 = "0jz93zv17ir7lbxb3dv8ph2n916rajs8i96immwx9vb45pqid3n0"; +}; in stdenv.mkDerivation rec { version = "0.4.8"; @@ -13,9 +18,13 @@ stdenv.mkDerivation rec { patchPhase = '' echo >commit_hash.txt 2dabbdf06f414750ef0425c664f861aeb3e470b8 + substituteInPlace deps/jsoncpp.cmake \ + --replace https://github.com/open-source-parsers/jsoncpp/archive/1.7.7.tar.gz ${jsoncpp} + substituteInPlace cmake/EthCompilerSettings.cmake \ + --replace 'add_compile_options(-Werror)' "" ''; - buildInputs = [ boost cmake jsoncpp ]; + buildInputs = [ boost cmake ]; meta = { description = "Compiler for Ethereum smart contract language Solidity"; diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index dd5d42b8a9f73..6163e177a8983 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -448,6 +448,16 @@ self: super: { apiary-session = dontCheck super.apiary-session; apiary-websockets = dontCheck super.apiary-websockets; + # See instructions provided by Peti in https://github.com/NixOS/nixpkgs/issues/23036 + purescript = super.purescript.overrideScope (self: super: { + # TODO: Re-evaluate the following overrides after the 0.11 release. + aeson = self.aeson_0_11_3_0; + http-client = self.http-client_0_4_31_2; + http-client-tls = self.http-client-tls_0_2_4_1; + pipes = self.pipes_4_2_0; + websockets = self.websockets_0_9_8_2; + }); + # HsColour: Language/Unlambda.hs: hGetContents: invalid argument (invalid byte sequence) unlambda = dontHyperlinkSource super.unlambda; @@ -624,20 +634,6 @@ self: super: { haskell-src-exts = self.haskell-src-exts_1_19_1; }; - # https://github.com/yesodweb/Shelly.hs/issues/106 - # https://github.com/yesodweb/Shelly.hs/issues/108 - # https://github.com/yesodweb/Shelly.hs/issues/130 - shelly = - let drv = appendPatch (dontCheck (doJailbreak super.shelly)) (pkgs.fetchpatch { - url = "https://github.com/k0001/Shelly.hs/commit/32a1e290961755e7b2379f59faa49b13d03dfef6.patch"; - sha256 = "0ccq0qly8bxxv64dk97a44ng6hb01j6ajs0sp3f2nn0hf5j3xv69"; - }); - in overrideCabal drv (drv : { - # doJailbreak doesn't seem to work for build-depends inside an - # if-then-else block so we have to do it manually. - postPatch = "sed -i 's/base >=4\.6 \&\& <4\.9\.1/base -any/' shelly.cabal"; - }); - # https://github.com/bos/configurator/issues/22 configurator = dontCheck super.configurator; @@ -873,4 +869,10 @@ self: super: { # https://github.com/snoyberg/yaml/issues/106 yaml = disableCabalFlag super.yaml "system-libyaml"; + # https://github.com/diagrams/diagrams-lib/issues/288 + diagrams-lib = overrideCabal super.diagrams-lib (drv: { doCheck = !pkgs.stdenv.isi686; }); + + # https://github.com/cartazio/arithmoi/issues/49 + arithmoi = overrideCabal super.arithmoi (drv: { doCheck = !pkgs.stdenv.isi686; }); + } diff --git a/pkgs/development/haskell-modules/configuration-ghc-6.12.x.nix b/pkgs/development/haskell-modules/configuration-ghc-6.12.x.nix index 32348f2c90953..03a905ea3d110 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-6.12.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-6.12.x.nix @@ -43,9 +43,9 @@ self: super: { # These packages are core libraries in GHC 7.10.x, but not here. binary = self.binary_0_8_4_1; deepseq = self.deepseq_1_3_0_1; - haskeline = self.haskeline_0_7_2_1; + haskeline = self.haskeline_0_7_3_1; hoopl = self.hoopl_3_10_2_0; - terminfo = self.terminfo_0_4_0_1; + terminfo = self.terminfo_0_4_0_2; transformers = self.transformers_0_4_3_0; xhtml = self.xhtml_3000_2_1; diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.0.x.nix index 16c1ff4f0652a..ca271e6c271e6 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.0.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.0.x.nix @@ -37,9 +37,9 @@ self: super: { # These packages are core libraries in GHC 7.10.x, but not here. binary = self.binary_0_7_6_1; deepseq = self.deepseq_1_3_0_1; - haskeline = self.haskeline_0_7_2_1; + haskeline = self.haskeline_0_7_3_1; hoopl = self.hoopl_3_10_2_0; - terminfo = self.terminfo_0_4_0_1; + terminfo = self.terminfo_0_4_0_2; transformers = self.transformers_0_4_3_0; xhtml = self.xhtml_3000_2_1; diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix index 6a7fe29b80fa0..54cd16957edc0 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix @@ -191,6 +191,7 @@ self: super: { unordered-containers = dontCheck super.unordered-containers; # GHC versions prior to 8.x require additional build inputs. + dependent-map = addBuildDepend super.dependent-map self.semigroups; distributive = addBuildDepend super.distributive self.semigroups; mono-traversable = addBuildDepend super.mono-traversable self.semigroups; attoparsec = addBuildDepends super.attoparsec (with self; [semigroups fail]); diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix index 5aea83e7567db..ee6e59c65ef3f 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix @@ -36,8 +36,8 @@ self: super: { # These packages are core libraries in GHC 7.10.x, but not here. deepseq = self.deepseq_1_3_0_1; - haskeline = self.haskeline_0_7_2_1; - terminfo = self.terminfo_0_4_0_1; + haskeline = self.haskeline_0_7_3_1; + terminfo = self.terminfo_0_4_0_2; transformers = self.transformers_0_4_3_0; xhtml = self.xhtml_3000_2_1; diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix index 32d3c89d5fe31..3bbfa34fb5022 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix @@ -35,8 +35,8 @@ self: super: { unix = null; # These packages are core libraries in GHC 7.10.x, but not here. - haskeline = self.haskeline_0_7_2_1; - terminfo = self.terminfo_0_4_0_1; + haskeline = self.haskeline_0_7_3_1; + terminfo = self.terminfo_0_4_0_2; transformers = self.transformers_0_4_3_0; xhtml = self.xhtml_3000_2_1; diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix index ffd6845b1d054..27fed51e6fc8e 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix @@ -34,8 +34,8 @@ self: super: { unix = null; # These packages are core libraries in GHC 7.10.x, but not here. - haskeline = self.haskeline_0_7_2_1; - terminfo = self.terminfo_0_4_0_1; + haskeline = self.haskeline_0_7_3_1; + terminfo = self.terminfo_0_4_0_2; transformers = self.transformers_0_4_3_0; xhtml = self.xhtml_3000_2_1; @@ -100,8 +100,12 @@ self: super: { semigroups = addBuildDepends super.semigroups (with self; [bytestring-builder nats tagged unordered-containers transformers]); lens = addBuildDepends super.lens (with self; [doctest generic-deriving nats simple-reflect]); distributive = addBuildDepend super.distributive self.semigroups; + QuickCheck = addBuildDepend super.QuickCheck self.semigroups; # Haddock doesn't cope with the new markup. bifunctors = dontHaddock super.bifunctors; + # Breaks a dependency cycle between QuickCheck and semigroups + unordered-containers = dontCheck super.unordered-containers; + } diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix index 4b18332648db8..1be8f16a7d587 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix @@ -65,7 +65,7 @@ self: super: { mkDerivation = drv: super.mkDerivation (drv // { doCheck = false; }); mtl = super.mtl_2_2_1; transformers = super.transformers_0_4_3_0; - haskeline = self.haskeline_0_7_2_1; + haskeline = self.haskeline_0_7_3_1; transformers-compat = disableCabalFlag super.transformers-compat "three"; })) (drv: {}); diff --git a/pkgs/development/haskell-modules/configuration-ghcjs.nix b/pkgs/development/haskell-modules/configuration-ghcjs.nix index 826869f828b12..e4a4f74907a88 100644 --- a/pkgs/development/haskell-modules/configuration-ghcjs.nix +++ b/pkgs/development/haskell-modules/configuration-ghcjs.nix @@ -47,10 +47,10 @@ self: super: # These packages are core libraries in GHC 7.10.x, but not here. bin-package-db = null; - haskeline = self.haskeline_0_7_2_1; + haskeline = self.haskeline_0_7_3_1; hoopl = self.hoopl_3_10_2_1; hpc = self.hpc_0_6_0_2; - terminfo = self.terminfo_0_4_0_1; + terminfo = self.terminfo_0_4_0_2; xhtml = self.xhtml_3000_2_1; diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml index 47fb3f7f87f1a..76c460786c1e5 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml @@ -37,6 +37,7 @@ core-packages: - ghcjs-base-0 default-package-overrides: + - store < 0.4.1 # https://github.com/fpco/store/issues/104 # LTS Haskell 8.3 - abstract-deque ==0.3 - abstract-par ==0.3.3 @@ -2247,6 +2248,13 @@ extra-packages: - transformers == 0.4.3.* # the latest version isn't supported by mtl yet - vector < 0.10.10 # newer versions don't work with GHC 6.12.3 - zlib < 0.6 # newer versions break cabal-install + - aeson == 0.11.3.0 # purescript 0.10.7 + - bower-json == 1.0.0.1 # purescript 0.10.7 + - optparse-applicative == 0.13.1.0 # purescript 0.10.7 + - http-client == 0.4.31.2 # purescript 0.10.7 + - http-client-tls == 0.2.4.1 # purescript 0.10.7 + - pipes == 4.2.0 # purescript 0.10.7 + - websockets == 0.9.8.2 # purescript 0.10.7 package-maintainers: peti: @@ -2480,6 +2488,7 @@ dont-distribute-packages: amazonka-appstream: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-budgets: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-codebuild: [ i686-linux, x86_64-linux, x86_64-darwin ] + amazonka-ec2: [ i686-linux ] amazonka-elbv2: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-health: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-kinesis-analytics: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2489,12 +2498,15 @@ dont-distribute-packages: amazonka-polly: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-rds: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-rekognition: [ i686-linux, x86_64-linux, x86_64-darwin ] + amazonka-s3: [ i686-linux ] + amazonka-s3-streaming: [ i686-linux ] amazonka-servicecatalog: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-shield: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-sms: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-snowball: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-sqs: [ i686-linux, x86_64-linux, x86_64-darwin ] amazonka-stepfunctions: [ i686-linux, x86_64-linux, x86_64-darwin ] + amazonka-swf: [ i686-linux ] amazonka-xray: [ i686-linux, x86_64-linux, x86_64-darwin ] amazon-products: [ i686-linux, x86_64-linux, x86_64-darwin ] amby: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2654,6 +2666,7 @@ dont-distribute-packages: aws-sign4: [ i686-linux, x86_64-linux, x86_64-darwin ] aws-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] aws-sns: [ i686-linux, x86_64-linux, x86_64-darwin ] + azubi: [ i686-linux, x86_64-linux, x86_64-darwin ] azure-service-api: [ i686-linux, x86_64-linux, x86_64-darwin ] azure-servicebus: [ i686-linux, x86_64-linux, x86_64-darwin ] azurify: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3566,6 +3579,7 @@ dont-distribute-packages: direct-plugins: [ i686-linux, x86_64-linux, x86_64-darwin ] dirfiles: [ i686-linux, x86_64-linux, x86_64-darwin ] discogs-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] + discord-hs: [ i686-linux, x86_64-linux, x86_64-darwin ] discordian-calendar: [ i686-linux, x86_64-linux, x86_64-darwin ] discount: [ i686-linux, x86_64-linux, x86_64-darwin ] DiscussionSupportSystem: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3678,6 +3692,7 @@ dont-distribute-packages: easyjson: [ i686-linux, x86_64-linux, x86_64-darwin ] easyplot: [ i686-linux, x86_64-linux, x86_64-darwin ] easyrender: [ i686-linux, x86_64-linux, x86_64-darwin ] + easytensor: [ i686-linux ] ebeats: [ i686-linux, x86_64-linux, x86_64-darwin ] ebnf-bff: [ i686-linux, x86_64-linux, x86_64-darwin ] ec2-unikernel: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3934,6 +3949,7 @@ dont-distribute-packages: FM-SBLEX: [ i686-linux, x86_64-linux, x86_64-darwin ] fn-extra: [ i686-linux, x86_64-linux, x86_64-darwin ] foldl-incremental: [ i686-linux, x86_64-linux, x86_64-darwin ] + foldl-statistics: [ i686-linux ] folds-common: [ i686-linux, x86_64-linux, x86_64-darwin ] follower: [ i686-linux, x86_64-linux, x86_64-darwin ] foma: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3951,6 +3967,7 @@ dont-distribute-packages: FormalGrammars: [ i686-linux, x86_64-linux, x86_64-darwin ] formal: [ i686-linux, x86_64-linux, x86_64-darwin ] format: [ i686-linux, x86_64-linux, x86_64-darwin ] + format-numbers: [ i686-linux ] format-status: [ i686-linux, x86_64-linux, x86_64-darwin ] formattable: [ i686-linux, x86_64-linux, x86_64-darwin ] formlets-hsp: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4156,6 +4173,7 @@ dont-distribute-packages: github-backup: [ i686-linux, x86_64-linux, x86_64-darwin ] github: [ i686-linux, x86_64-linux, x86_64-darwin ] github-release: [ i686-linux, x86_64-linux, x86_64-darwin ] + github-tools: [ i686-linux ] github-utils: [ i686-linux, x86_64-linux, x86_64-darwin ] github-webhook-handler-snap: [ i686-linux, x86_64-linux, x86_64-darwin ] gitignore: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4788,6 +4806,7 @@ dont-distribute-packages: hgeometry: [ i686-linux, x86_64-linux, x86_64-darwin ] hgeos: [ i686-linux, x86_64-linux, x86_64-darwin ] hgettext: [ i686-linux, x86_64-linux, x86_64-darwin ] + hgis: [ i686-linux, x86_64-linux, x86_64-darwin ] hgithub: [ i686-linux, x86_64-linux, x86_64-darwin ] hgom: [ i686-linux, x86_64-linux, x86_64-darwin ] hgopher: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4812,6 +4831,8 @@ dont-distribute-packages: higher-leveldb: [ i686-linux, x86_64-linux, x86_64-darwin ] higherorder: [ i686-linux, x86_64-linux, x86_64-darwin ] highjson: [ i686-linux, x86_64-linux, x86_64-darwin ] + highjson-swagger: [ i686-linux ] + highjson-th: [ i686-linux ] highWaterMark: [ i686-linux, x86_64-linux, x86_64-darwin ] hi: [ i686-linux, x86_64-linux, x86_64-darwin ] himg: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4933,6 +4954,7 @@ dont-distribute-packages: hopfli: [ i686-linux, x86_64-linux, x86_64-darwin ] hops: [ i686-linux, x86_64-linux, x86_64-darwin ] hoq: [ i686-linux, x86_64-linux, x86_64-darwin ] + hora: [ i686-linux ] ho-rewriting: [ i686-linux, x86_64-linux, x86_64-darwin ] horizon: [ i686-linux, x86_64-linux, x86_64-darwin ] hosts-server: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5155,6 +5177,7 @@ dont-distribute-packages: http-dispatch: [ i686-linux, x86_64-linux, x86_64-darwin ] http-enumerator: [ i686-linux, x86_64-linux, x86_64-darwin ] http-kinder: [ i686-linux, x86_64-linux, x86_64-darwin ] + http-link-header: [ i686-linux ] http-pony: [ i686-linux, x86_64-linux, x86_64-darwin ] http-proxy: [ i686-linux, x86_64-linux, x86_64-darwin ] https-everywhere-rules: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5427,6 +5450,7 @@ dont-distribute-packages: jcdecaux-vls: [ i686-linux, x86_64-linux, x86_64-darwin ] Jdh: [ i686-linux, x86_64-linux, x86_64-darwin ] jdi: [ i686-linux, x86_64-linux, x86_64-darwin ] + jenga: [ i686-linux, x86_64-linux, x86_64-darwin ] jespresso: [ i686-linux, x86_64-linux, x86_64-darwin ] jni: [ i686-linux, x86_64-linux, x86_64-darwin ] jobqueue: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5434,6 +5458,7 @@ dont-distribute-packages: joinlist: [ i686-linux, x86_64-linux, x86_64-darwin ] jonathanscard: [ i686-linux, x86_64-linux, x86_64-darwin ] jort: [ i686-linux, x86_64-linux, x86_64-darwin ] + jose-jwt: [ i686-linux ] jsaddle-dom: [ i686-linux, x86_64-linux, x86_64-darwin ] jsaddle-hello: [ i686-linux, x86_64-linux, x86_64-darwin ] jsaddle: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5858,6 +5883,7 @@ dont-distribute-packages: maam: [ i686-linux, x86_64-linux, x86_64-darwin ] macbeth-lib: [ i686-linux, x86_64-linux, x86_64-darwin ] machinecell: [ i686-linux, x86_64-linux, x86_64-darwin ] + machines-amazonka: [ i686-linux, x86_64-linux, x86_64-darwin ] machines-zlib: [ i686-linux, x86_64-linux, x86_64-darwin ] maclight: [ i686-linux, x86_64-linux, x86_64-darwin ] macosx-make-standalone: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5946,6 +5972,8 @@ dont-distribute-packages: mech: [ i686-linux, x86_64-linux, x86_64-darwin ] mechs: [ i686-linux, x86_64-linux, x86_64-darwin ] Mechs: [ i686-linux, x86_64-linux, x86_64-darwin ] + mediabus: [ i686-linux ] + mediabus-rtp: [ i686-linux ] mediawiki2latex: [ i686-linux, x86_64-linux, x86_64-darwin ] mediawiki: [ i686-linux, x86_64-linux, x86_64-darwin ] medium-sdk-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6340,6 +6368,7 @@ dont-distribute-packages: objectid: [ i686-linux, x86_64-linux, x86_64-darwin ] ObjectIO: [ i686-linux, x86_64-linux, x86_64-darwin ] obj: [ i686-linux, x86_64-linux, x86_64-darwin ] + octane: [ i686-linux ] octohat: [ i686-linux, x86_64-linux, x86_64-darwin ] octopus: [ i686-linux, x86_64-linux, x86_64-darwin ] oculus: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6445,6 +6474,7 @@ dont-distribute-packages: pandoc-placetable: [ i686-linux, x86_64-linux, x86_64-darwin ] pandoc-plantuml-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] pandoc-unlit: [ i686-linux, x86_64-linux, x86_64-darwin ] + pansite: [ i686-linux, x86_64-linux, x86_64-darwin ] papa: [ i686-linux, x86_64-linux, x86_64-darwin ] papa-prelude: [ i686-linux, x86_64-linux, x86_64-darwin ] papa-prelude-lens: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6764,7 +6794,6 @@ dont-distribute-packages: pure-priority-queue-tests: [ i686-linux, x86_64-linux, x86_64-darwin ] purescript-bridge: [ i686-linux, x86_64-linux, x86_64-darwin ] purescript-bundle-fast: [ i686-linux, x86_64-linux, x86_64-darwin ] - purescript: [ i686-linux, x86_64-linux, x86_64-darwin ] pure-zlib: [ i686-linux, x86_64-linux, x86_64-darwin ] pusher-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] pusher-http-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7073,6 +7102,7 @@ dont-distribute-packages: rncryptor: [ i686-linux, x86_64-linux, x86_64-darwin ] robot: [ i686-linux, x86_64-linux, x86_64-darwin ] robots-txt: [ i686-linux, x86_64-linux, x86_64-darwin ] + rocksdb-haskell: [ i686-linux ] roguestar-engine: [ i686-linux, x86_64-linux, x86_64-darwin ] roguestar-gl: [ i686-linux, x86_64-linux, x86_64-darwin ] roguestar-glut: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7119,6 +7149,7 @@ dont-distribute-packages: RxHaskell: [ i686-linux, x86_64-linux, x86_64-darwin ] SableCC2Hs: [ i686-linux, x86_64-linux, x86_64-darwin ] safe-access: [ i686-linux, x86_64-linux, x86_64-darwin ] + safecopy-store: [ i686-linux, x86_64-linux, x86_64-darwin ] safe-freeze: [ i686-linux, x86_64-linux, x86_64-darwin ] safe-globals: [ i686-linux, x86_64-linux, x86_64-darwin ] safeint: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7246,6 +7277,7 @@ dont-distribute-packages: servant-auth-token-persistent: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-csharp: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-db-postgresql: [ i686-linux, x86_64-linux, x86_64-darwin ] + servant-docs: [ i686-linux ] servant-examples: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-github: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-github-webhook: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7328,6 +7360,7 @@ dont-distribute-packages: sibe: [ i686-linux, x86_64-linux, x86_64-darwin ] sifflet: [ i686-linux, x86_64-linux, x86_64-darwin ] sifflet-lib: [ i686-linux, x86_64-linux, x86_64-darwin ] + sigma-ij: [ i686-linux ] signals: [ i686-linux, x86_64-linux, x86_64-darwin ] signed-multiset: [ i686-linux, x86_64-linux, x86_64-darwin ] simd: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7657,6 +7690,7 @@ dont-distribute-packages: svgutils: [ i686-linux, x86_64-linux, x86_64-darwin ] svm-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] svndump: [ i686-linux, x86_64-linux, x86_64-darwin ] + swagger2: [ i686-linux ] swagger: [ i686-linux, x86_64-linux, x86_64-darwin ] swapper: [ i686-linux, x86_64-linux, x86_64-darwin ] swearjure: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7736,6 +7770,7 @@ dont-distribute-packages: tasty-fail-fast: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-groundhog-converters: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-integrate: [ i686-linux, x86_64-linux, x86_64-darwin ] + tasty-jenkins-xml: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-laws: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-lens: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-tap: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7912,6 +7947,7 @@ dont-distribute-packages: total: [ i686-linux, x86_64-linux, x86_64-darwin ] touched: [ i686-linux, x86_64-linux, x86_64-darwin ] Tournament: [ i686-linux, x86_64-linux, x86_64-darwin ] + tower: [ i686-linux ] toxcore: [ i686-linux, x86_64-linux, x86_64-darwin ] toysolver: [ i686-linux, x86_64-linux, x86_64-darwin ] tpar: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8145,6 +8181,7 @@ dont-distribute-packages: verdict-json: [ i686-linux, x86_64-linux, x86_64-darwin ] verilog: [ i686-linux, x86_64-linux, x86_64-darwin ] vgrep: [ i686-linux, x86_64-linux, x86_64-darwin ] + ViennaRNA-bindings: [ i686-linux, x86_64-linux, x86_64-darwin ] views: [ i686-linux, x86_64-linux, x86_64-darwin ] vigilance: [ i686-linux, x86_64-linux, x86_64-darwin ] vimeta: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8190,6 +8227,7 @@ dont-distribute-packages: wai-lite: [ i686-linux, x86_64-linux, x86_64-darwin ] wai-logger-prefork: [ i686-linux, x86_64-linux, x86_64-darwin ] wai-make-assets: [ i686-linux, x86_64-linux, x86_64-darwin ] + wai-middleware-auth: [ i686-linux ] wai-middleware-cache: [ i686-linux, x86_64-linux, x86_64-darwin ] wai-middleware-cache-redis: [ i686-linux, x86_64-linux, x86_64-darwin ] wai-middleware-catch: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8480,6 +8518,7 @@ dont-distribute-packages: yesod-tls: [ i686-linux, x86_64-linux, x86_64-darwin ] yesod-vend: [ i686-linux, x86_64-linux, x86_64-darwin ] yesod-worker: [ i686-linux, x86_64-linux, x86_64-darwin ] + yet-another-logger: [ i686-linux ] YFrob: [ i686-linux, x86_64-linux, x86_64-darwin ] yhccore: [ i686-linux, x86_64-linux, x86_64-darwin ] yices: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8521,6 +8560,7 @@ dont-distribute-packages: zim-parser: [ i686-linux, x86_64-linux, x86_64-darwin ] zip-conduit: [ i686-linux, x86_64-linux, x86_64-darwin ] zipedit: [ i686-linux, x86_64-linux, x86_64-darwin ] + zip: [ i686-linux ] zipkin: [ i686-linux, x86_64-linux, x86_64-darwin ] zipper: [ i686-linux, x86_64-linux, x86_64-darwin ] zlib-enum: [ i686-linux, x86_64-linux, x86_64-darwin ] diff --git a/pkgs/development/haskell-modules/default.nix b/pkgs/development/haskell-modules/default.nix index 7ba06b6b60c1b..df17c769ea2d0 100644 --- a/pkgs/development/haskell-modules/default.nix +++ b/pkgs/development/haskell-modules/default.nix @@ -56,7 +56,7 @@ let haskellSrc2nix = { name, src, sha256 ? null }: let - sha256Arg = if isNull sha256 then "" else ''--sha256="${sha256}"''; + sha256Arg = if isNull sha256 then "--sha256=" else ''--sha256="${sha256}"''; in pkgs.stdenv.mkDerivation { name = "cabal2nix-${name}"; buildInputs = [ pkgs.cabal2nix ]; diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 0c70f42b65f98..d9ebdb70b82cb 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -3450,19 +3450,22 @@ self: { }) {}; "DPutils" = callPackage - ({ mkDerivation, base, containers, criterion, kan-extensions - , parallel, pipes, QuickCheck, tasty, tasty-quickcheck, tasty-th - , vector + ({ mkDerivation, base, bytestring, containers, criterion + , kan-extensions, lens, mtl, parallel, pipes, pipes-bytestring + , pipes-parse, QuickCheck, quickcheck-instances, stringsearch + , tasty, tasty-quickcheck, tasty-th, transformers, vector }: mkDerivation { pname = "DPutils"; - version = "0.0.0.2"; - sha256 = "cfa99cdd515cffd20f5c20ad100d4793ea3d36f650a7c049bc7182efec5cc33e"; + version = "0.0.1.0"; + sha256 = "2640e8e994275b3227578d33551f60528da345ad336c287b10136113f0de11a8"; libraryHaskellDepends = [ - base containers kan-extensions parallel pipes QuickCheck vector + base bytestring containers kan-extensions parallel pipes QuickCheck + stringsearch transformers vector ]; testHaskellDepends = [ - base containers kan-extensions parallel pipes QuickCheck tasty + base bytestring containers kan-extensions lens mtl parallel pipes + pipes-bytestring pipes-parse QuickCheck quickcheck-instances tasty tasty-quickcheck tasty-th vector ]; benchmarkHaskellDepends = [ base criterion vector ]; @@ -4543,6 +4546,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "Empty" = callPackage + ({ mkDerivation, base, containers }: + mkDerivation { + pname = "Empty"; + version = "0.1.0.1"; + sha256 = "62afb83e3ca21f67181289f6496e566ffb2bbadfec91f170bc6f40a76212953d"; + libraryHaskellDepends = [ base containers ]; + description = "A type class for empty containers"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "Encode" = callPackage ({ mkDerivation, base, Cabal, containers, mtl }: mkDerivation { @@ -8022,8 +8036,8 @@ self: { }: mkDerivation { pname = "HSH"; - version = "2.1.2"; - sha256 = "788a7f25336e7fe9c7d38b68bb4cc0030712fc47e0cdf282267dea1e46b0da9f"; + version = "2.1.3"; + sha256 = "54df051277d3dfe263277e2c2416ecb5f1515bc69729870f13749b495565670d"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -13750,22 +13764,23 @@ self: { "PrimitiveArray" = callPackage ({ mkDerivation, aeson, base, binary, bits, cereal, cereal-vector - , deepseq, DPutils, hashable, OrderedBits, primitive, QuickCheck - , smallcheck, tasty, tasty-quickcheck, tasty-smallcheck, tasty-th - , vector, vector-binary-instances, vector-th-unbox + , containers, deepseq, DPutils, hashable, log-domain, OrderedBits + , primitive, QuickCheck, smallcheck, tasty, tasty-quickcheck + , tasty-smallcheck, tasty-th, text, vector, vector-binary-instances + , vector-th-unbox }: mkDerivation { pname = "PrimitiveArray"; - version = "0.7.1.0"; - sha256 = "d950e1f842ff65012484a7d0c03f1b3e990d3ff6bdd08eecdac4d478f9af23f6"; + version = "0.8.0.0"; + sha256 = "b4af0d0d8502dc8ba8985cd70b69a0220a70e8d44a2ee4dfa73db1bce5774445"; libraryHaskellDepends = [ aeson base binary bits cereal cereal-vector deepseq DPutils - hashable OrderedBits primitive QuickCheck smallcheck vector - vector-binary-instances vector-th-unbox + hashable log-domain OrderedBits primitive QuickCheck smallcheck + text vector vector-binary-instances vector-th-unbox ]; testHaskellDepends = [ - base QuickCheck smallcheck tasty tasty-quickcheck tasty-smallcheck - tasty-th + base containers QuickCheck smallcheck tasty tasty-quickcheck + tasty-smallcheck tasty-th ]; homepage = "https://github.com/choener/PrimitiveArray"; description = "Efficient multidimensional arrays"; @@ -13774,17 +13789,18 @@ self: { }) {}; "PrimitiveArray-Pretty" = callPackage - ({ mkDerivation, base, diagrams, diagrams-lib, diagrams-postscript - , diagrams-svg, log-domain, QuickCheck, split, test-framework - , test-framework-quickcheck2, test-framework-th + ({ mkDerivation, base, diagrams, diagrams-contrib, diagrams-lib + , diagrams-postscript, diagrams-svg, filepath, log-domain + , QuickCheck, split, test-framework, test-framework-quickcheck2 + , test-framework-th }: mkDerivation { pname = "PrimitiveArray-Pretty"; - version = "0.0.0.1"; - sha256 = "cd1b84ee169bb3fa05eac16916158a622984a78e9ddaca834deec3f79e6095ac"; + version = "0.0.0.2"; + sha256 = "87d0b2c42dc47f3c6c42b94dcd543b09bdc512e67f81c7ab72368cc374bc894d"; libraryHaskellDepends = [ - base diagrams diagrams-lib diagrams-postscript diagrams-svg - log-domain split + base diagrams diagrams-contrib diagrams-lib diagrams-postscript + diagrams-svg filepath log-domain split ]; testHaskellDepends = [ base QuickCheck test-framework test-framework-quickcheck2 @@ -17477,16 +17493,22 @@ self: { }) {}; "ViennaRNA-bindings" = callPackage - ({ mkDerivation, array, base, c2hs }: + ({ mkDerivation, array, base, c2hs, QuickCheck, tasty, tasty-hunit + , tasty-silver, tasty-th + }: mkDerivation { pname = "ViennaRNA-bindings"; - version = "0.1.2.2"; - sha256 = "83169ef8f28901644c36446b12322ab5e63b5d5c5a007de4fad878ddb61eff1b"; + version = "0.233.1.1"; + sha256 = "8435afc87b0265175eef88b586e69934e8404bd5126b6d6f5969c6486ce31b1a"; libraryHaskellDepends = [ array base ]; libraryToolDepends = [ c2hs ]; - homepage = "http://www.tbi.univie.ac.at/~choener/"; + testHaskellDepends = [ + array base QuickCheck tasty tasty-hunit tasty-silver tasty-th + ]; + homepage = "https://github.com/choener/ViennaRNA-bindings"; description = "ViennaRNA v2 bindings"; license = "unknown"; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ViennaRNAParser" = callPackage @@ -20189,6 +20211,35 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "aeson_0_11_3_0" = callPackage + ({ mkDerivation, attoparsec, base, base-orphans, bytestring + , containers, deepseq, dlist, fail, ghc-prim, hashable, HUnit, mtl + , QuickCheck, quickcheck-instances, scientific, syb, tagged + , template-haskell, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, time, transformers + , unordered-containers, vector + }: + mkDerivation { + pname = "aeson"; + version = "0.11.3.0"; + sha256 = "f326fac57881c228d91f610a2c92f083a60e3830d9c7d35dfb0a16925c95ece9"; + libraryHaskellDepends = [ + attoparsec base bytestring containers deepseq dlist fail ghc-prim + hashable mtl scientific syb tagged template-haskell text time + transformers unordered-containers vector + ]; + testHaskellDepends = [ + attoparsec base base-orphans bytestring containers ghc-prim + hashable HUnit QuickCheck quickcheck-instances tagged + template-haskell test-framework test-framework-hunit + test-framework-quickcheck2 text time unordered-containers vector + ]; + homepage = "https://github.com/bos/aeson"; + description = "Fast JSON parsing and encoding"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "aeson" = callPackage ({ mkDerivation, attoparsec, base, base-compat, base-orphans , base16-bytestring, bytestring, containers, deepseq, dlist @@ -22719,6 +22770,7 @@ self: { homepage = "https://github.com/brendanhay/amazonka"; description = "Amazon Elastic Compute Cloud SDK"; license = "unknown"; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "amazonka-ecr" = callPackage @@ -23394,6 +23446,7 @@ self: { homepage = "https://github.com/brendanhay/amazonka"; description = "Amazon Simple Storage Service SDK"; license = "unknown"; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "amazonka-s3-streaming" = callPackage @@ -23418,6 +23471,7 @@ self: { homepage = "https://github.com/Axman6/amazonka-s3-streaming#readme"; description = "Provides conduits to upload data to S3 using the Multipart API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "amazonka-s3-streaming_0_2_0_1" = callPackage @@ -23703,6 +23757,7 @@ self: { homepage = "https://github.com/brendanhay/amazonka"; description = "Amazon Simple Workflow Service SDK"; license = "unknown"; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "amazonka-test" = callPackage @@ -28400,15 +28455,18 @@ self: { }: mkDerivation { pname = "azubi"; - version = "0.2.0.0"; - sha256 = "c3ac3b5ff5960c7ba0349bae282be1b0e4f361268b85aa80d57f399bac5a455c"; + version = "0.2.0.1"; + sha256 = "9c772283727f23f433bb3617917ad7318c179a7e34b9bc890ab42ca20e9bd651"; libraryHaskellDepends = [ base Diff directory filepath options process unix ]; - testHaskellDepends = [ base filepath hspec ]; + testHaskellDepends = [ + base Diff directory filepath hspec options process unix + ]; homepage = "http://palovandalo.com/azubi"; description = "A simple DevOps tool which will never \"reach\" enterprice level"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "azure-acs" = callPackage @@ -29327,6 +29385,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "basic-prelude_0_6_1_1" = callPackage + ({ mkDerivation, base, bytestring, containers, filepath, hashable + , lifted-base, ReadArgs, safe, text, transformers + , unordered-containers, vector + }: + mkDerivation { + pname = "basic-prelude"; + version = "0.6.1.1"; + sha256 = "f7b178ad8d1491933e1eb8def0b98c7270da3a5e06bed977f0c624c24ff92ec7"; + libraryHaskellDepends = [ + base bytestring containers filepath hashable lifted-base ReadArgs + safe text transformers unordered-containers vector + ]; + homepage = "https://github.com/snoyberg/basic-prelude"; + description = "An enhanced core prelude; a common foundation for alternate preludes"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "basic-sop" = callPackage ({ mkDerivation, base, deepseq, generics-sop, QuickCheck, text }: mkDerivation { @@ -30258,8 +30335,8 @@ self: { }: mkDerivation { pname = "bimaps"; - version = "0.1.0.1"; - sha256 = "c143b5e2643d3c679b0e3083fe46a447eeab4fbac1f979c593c5c189f047ba04"; + version = "0.1.0.2"; + sha256 = "9774dd645620074f0b95d8c29183f4bf328944f571b2dbe9c0f02d508c6d9520"; libraryHaskellDepends = [ aeson base binary cereal cereal-vector containers deepseq hashable primitive storable-tuple unordered-containers vector @@ -34431,15 +34508,13 @@ self: { }) {}; "bson-mapping" = callPackage - ({ mkDerivation, base, bson, compact-string-fix, template-haskell - , th-lift - }: + ({ mkDerivation, base, bson, template-haskell, text, th-lift }: mkDerivation { pname = "bson-mapping"; - version = "0.1.4.1"; - sha256 = "eaa729942da079f4d4bce93ab1be378491fe171d74d6297814b8d203fdcc214d"; + version = "0.1.5.0"; + sha256 = "ba8ec4df8362c67e3da032399e92ddc94a6ddbd80232e2566648de0b5d53085a"; libraryHaskellDepends = [ - base bson compact-string-fix template-haskell th-lift + base bson template-haskell text th-lift ]; description = "Mapping between BSON and algebraic data types"; license = "unknown"; @@ -35681,8 +35756,8 @@ self: { }: mkDerivation { pname = "cabal-bounds"; - version = "1.0.4"; - sha256 = "2621cd4e76357bcf7f175413c111874c6afc552d80c85372dc43f4bcd5c99719"; + version = "1.0.5"; + sha256 = "10a81b97a6d993c37778b5840be9a7a67ab47feb59cec3550e345ab5239c8e62"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -35705,8 +35780,8 @@ self: { }: mkDerivation { pname = "cabal-cargs"; - version = "0.7.10"; - sha256 = "464b299f095150bd0831df7dbab45d272909875a21f4030b79aee58faefdbb1d"; + version = "0.7.11"; + sha256 = "160d44411a0a8fe922ae1aa192de5b481d4354d5df4e863d2782f49f0ab57277"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -36078,8 +36153,8 @@ self: { }: mkDerivation { pname = "cabal-lenses"; - version = "0.4.8"; - sha256 = "0dd6bbe6b77f6d8cfaff690f0ce53064e9fae10d317278205895fa5fb8d13195"; + version = "0.4.9"; + sha256 = "59bb6a13229fbb28a481cb8839369cfd0e30c2d9f65a93f3ee8240ad19288238"; libraryHaskellDepends = [ base Cabal either lens strict system-fileio system-filepath text transformers unordered-containers @@ -40516,6 +40591,38 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "classy-prelude_1_2_0_1" = callPackage + ({ mkDerivation, async, base, basic-prelude, bifunctors, bytestring + , chunked-data, containers, deepseq, dlist, exceptions, ghc-prim + , hashable, hspec, lifted-async, lifted-base, monad-unlift + , mono-traversable, mono-traversable-instances, mtl + , mutable-containers, primitive, QuickCheck, safe-exceptions, say + , semigroups, stm, stm-chans, text, time, time-locale-compat + , transformers, transformers-base, unordered-containers, vector + , vector-instances + }: + mkDerivation { + pname = "classy-prelude"; + version = "1.2.0.1"; + sha256 = "a47ee0c339a73b19fb511e1477fec6a385d2180bcc836a92c157dcb5c91ffa34"; + libraryHaskellDepends = [ + async base basic-prelude bifunctors bytestring chunked-data + containers deepseq dlist exceptions ghc-prim hashable lifted-async + lifted-base monad-unlift mono-traversable + mono-traversable-instances mtl mutable-containers primitive + safe-exceptions say semigroups stm stm-chans text time + time-locale-compat transformers transformers-base + unordered-containers vector vector-instances + ]; + testHaskellDepends = [ + base containers hspec QuickCheck transformers unordered-containers + ]; + homepage = "https://github.com/snoyberg/mono-traversable"; + description = "A typeclass-based Prelude"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "classy-prelude-conduit" = callPackage ({ mkDerivation, base, bytestring, classy-prelude, conduit , conduit-combinators, hspec, monad-control, QuickCheck, resourcet @@ -41086,18 +41193,23 @@ self: { }) {}; "clit" = callPackage - ({ mkDerivation, aeson, authenticate-oauth, base, bytestring - , data-default, http-client, http-client-tls, http-types, lens - , optparse-applicative, split, text + ({ mkDerivation, aeson, ansi-wl-pprint, authenticate-oauth, base + , bytestring, data-default, http-client, http-client-tls + , http-types, lens, megaparsec, MissingH, optparse-applicative + , split, text }: mkDerivation { pname = "clit"; - version = "0.2.2.6"; - sha256 = "28913ec550761c623008250ef071840761216eaa1bb9e02b77c32c1dac6bb656"; + version = "0.3.0.3"; + sha256 = "963a5a636ded2f1f7ac7a6b4b4af8a38403ecda4913e12b36719ee57c1a27925"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ - aeson authenticate-oauth base bytestring data-default http-client - http-client-tls http-types lens optparse-applicative split text + aeson ansi-wl-pprint authenticate-oauth base bytestring + data-default http-client http-client-tls http-types lens megaparsec + MissingH optparse-applicative split text ]; + executableHaskellDepends = [ base ]; homepage = "https://github.com/vmchale/command-line-tweeter#readme"; description = "Post tweets from stdin"; license = stdenv.lib.licenses.bsd3; @@ -43344,14 +43456,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "concurrency_1_1_0_0" = callPackage + "concurrency_1_1_1_0" = callPackage ({ mkDerivation, array, atomic-primops, base, exceptions , monad-control, mtl, stm, transformers }: mkDerivation { pname = "concurrency"; - version = "1.1.0.0"; - sha256 = "bc6e4d9db178937bf5223b8534bb56bf508242259ee489709af203ad39914605"; + version = "1.1.1.0"; + sha256 = "f955671cc7814d06d99a84f003423d8903604cdc9911d7f4986acaa39c519973"; libraryHaskellDepends = [ array atomic-primops base exceptions monad-control mtl stm transformers @@ -51969,15 +52081,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "dejafu_0_5_1_1" = callPackage + "dejafu_0_5_1_2" = callPackage ({ mkDerivation, base, concurrency, containers, deepseq, exceptions , monad-loops, mtl, random, ref-fd, semigroups, transformers , transformers-base }: mkDerivation { pname = "dejafu"; - version = "0.5.1.1"; - sha256 = "c8ba221dd45a107488e5b499fc59f66587a66eb366c4e3dafb76b84b9d38488a"; + version = "0.5.1.2"; + sha256 = "0e6114f59678ff0c5a9f5a4561f9b1ae4d87c77c50fd498e447ca7f67eae6d4c"; libraryHaskellDepends = [ base concurrency containers deepseq exceptions monad-loops mtl random ref-fd semigroups transformers transformers-base @@ -54325,26 +54437,27 @@ self: { "discord-hs" = callPackage ({ mkDerivation, aeson, base, bytestring, case-insensitive - , containers, data-default, hakyll, hashable, hslogger, lens - , mmorph, mtl, pipes, split, stm, stm-conduit, text, time - , transformers, unordered-containers, url, vector, websockets, wreq - , wuss + , containers, data-default, hakyll, hashable, hslogger, http-client + , mmorph, mtl, pipes, req, split, stm, stm-conduit, text, time + , transformers, unordered-containers, url, vector, websockets, wuss }: mkDerivation { pname = "discord-hs"; - version = "0.1.3"; - sha256 = "4cdcbc983ef10838e96344ad9b63e772296d9e734b4dc87768f657b7aaa106fc"; + version = "0.2.1"; + sha256 = "439cc60b1206c4709a9a28e9ac5c64f7fb6eb5e40014ef055624459842add95e"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base bytestring case-insensitive containers data-default - hashable hslogger lens mmorph mtl pipes stm stm-conduit text time - transformers unordered-containers url vector websockets wreq wuss + hashable hslogger http-client mmorph mtl pipes req stm stm-conduit + text time transformers unordered-containers url vector websockets + wuss ]; executableHaskellDepends = [ base hakyll split ]; homepage = "https://github.com/jano017/Discord.hs"; description = "An API wrapper for Discord in Haskell"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "discordian-calendar" = callPackage @@ -54476,8 +54589,8 @@ self: { ({ mkDerivation, base, dlist }: mkDerivation { pname = "disposable"; - version = "0.1.0.0"; - sha256 = "fc7d7dc460566c9f3ac965c355792806278a19a0fa35e89ab3a5df465fb34e43"; + version = "0.1.1.0"; + sha256 = "719e8e28cfe3345c441478f9d88949767122d2708241a0e232e9fe672c662b12"; libraryHaskellDepends = [ base dlist ]; homepage = "https://github.com/louispan/disposable#readme"; description = "Allows storing different resource-releasing actions together"; @@ -57462,6 +57575,7 @@ self: { homepage = "https://github.com/achirkin/easytensor#readme"; description = "Initial project template from stack"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "ebeats" = callPackage @@ -61132,13 +61246,22 @@ self: { }) {inherit (pkgs) exif;}; "exinst" = callPackage - ({ mkDerivation, base, constraints, profunctors, singletons }: + ({ mkDerivation, aeson, base, bytes, constraints, deepseq + , generic-random, hashable, profunctors, QuickCheck, singletons + , tasty, tasty-hunit, tasty-quickcheck + }: mkDerivation { pname = "exinst"; - version = "0.2"; - sha256 = "64c8d5a121db7274436f4e0fdb5c7ea3c9746419a84c0f16e6edb92bb83c7a3b"; + version = "0.3"; + sha256 = "3edfe07ca71b4c296349661f8f2d496100d3b44ae72af8ce1ab7f76f1adddb11"; libraryHaskellDepends = [ - base constraints profunctors singletons + aeson base bytes constraints deepseq hashable profunctors + QuickCheck singletons + ]; + testHaskellDepends = [ + aeson base bytes constraints deepseq generic-random hashable + profunctors QuickCheck singletons tasty tasty-hunit + tasty-quickcheck ]; homepage = "https://github.com/k0001/exinst"; description = "Derive instances for your existential types"; @@ -61584,6 +61707,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "extensible_0_4" = callPackage + ({ mkDerivation, base, comonad, constraints, criterion, deepseq + , effin, extensible-effects, freer, ghc-prim, lens, monad-skeleton + , mtl, primitive, profunctors, semigroups, tagged, template-haskell + , transformers + }: + mkDerivation { + pname = "extensible"; + version = "0.4"; + sha256 = "f9fbd703c2ac7b2790446cb04281d3577848797d53413374e5c1987afcec3a1c"; + libraryHaskellDepends = [ + base comonad constraints deepseq ghc-prim monad-skeleton mtl + primitive profunctors semigroups tagged template-haskell + transformers + ]; + testHaskellDepends = [ base ]; + benchmarkHaskellDepends = [ + base criterion effin extensible-effects freer lens mtl + ]; + homepage = "https://github.com/fumieval/extensible"; + description = "Extensible, efficient, optics-friendly data types and effects"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "extensible-data" = callPackage ({ mkDerivation, base, data-lens, hashable, template-haskell , unordered-containers @@ -62282,8 +62430,8 @@ self: { pname = "fay"; version = "0.23.1.16"; sha256 = "c46ef8cb7980bcf62ef7ccc9897e9c4246e6bec8cafc06d49ebe1d5bcd618a64"; - revision = "3"; - editedCabalFile = "636e2fbbe689dde982c327a7fc33871804ec66e47105d6cbffd6ce09716c241f"; + revision = "4"; + editedCabalFile = "efe4614bc8832765c649a86b4e4a8c26122af3a5a23cad77676e062e3a85f66c"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -63130,6 +63278,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "fgl_5_5_3_1" = callPackage + ({ mkDerivation, array, base, containers, deepseq, hspec + , microbench, QuickCheck, transformers + }: + mkDerivation { + pname = "fgl"; + version = "5.5.3.1"; + sha256 = "dea97201d22c55b57a38b8f5a1ff272be8ba83db3824ab0f1232c60b8dcc2e4c"; + libraryHaskellDepends = [ + array base containers deepseq transformers + ]; + testHaskellDepends = [ base containers hspec QuickCheck ]; + benchmarkHaskellDepends = [ base deepseq microbench ]; + description = "Martin Erwig's Functional Graph Library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "fgl-arbitrary" = callPackage ({ mkDerivation, base, containers, fgl, hspec, QuickCheck }: mkDerivation { @@ -63142,6 +63308,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "fgl-arbitrary_0_2_0_3" = callPackage + ({ mkDerivation, base, containers, fgl, hspec, QuickCheck }: + mkDerivation { + pname = "fgl-arbitrary"; + version = "0.2.0.3"; + sha256 = "55ba994bdb884497b5e664b1c14969d66235ba2358eb38283aca21efded7c152"; + libraryHaskellDepends = [ base fgl QuickCheck ]; + testHaskellDepends = [ base containers fgl hspec QuickCheck ]; + description = "QuickCheck support for fgl"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "fgl-extras-decompositions" = callPackage ({ mkDerivation, base, containers, fgl }: mkDerivation { @@ -64778,8 +64957,8 @@ self: { }: mkDerivation { pname = "fltkhs"; - version = "0.5.1.1"; - sha256 = "9230417d449ea9af3257dbaba15a7aada3db6289b2e26246bbd92787f3cb394c"; + version = "0.5.1.2"; + sha256 = "30a8f7229bb16ccd72bdefddf67d4ef23e9c87e200207dfdf944b737dd49a71d"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal directory filepath ]; @@ -64945,8 +65124,8 @@ self: { }: mkDerivation { pname = "fmt"; - version = "0.0.0.3"; - sha256 = "a6cc32309e996acc4db281368184a1333b52072023315dfa8f20fbfa235ed81b"; + version = "0.0.0.4"; + sha256 = "bfc71940c7f5c90c72945906e0887eb71894858593d536cb43b04109fd82634f"; libraryHaskellDepends = [ base base16-bytestring base64-bytestring bytestring microlens text text-format @@ -65113,6 +65292,7 @@ self: { homepage = "http://github.com/Data61/foldl-statistics#readme"; description = "Statistical functions from the statistics package implemented as Folds"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "foldl-transduce" = callPackage @@ -65518,6 +65698,7 @@ self: { homepage = "https://github.com/agrafix/format-numbers#readme"; description = "Various number formatting functions"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "format-status" = callPackage @@ -70110,6 +70291,24 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ghcjs-hplay_0_4_1" = callPackage + ({ mkDerivation, base, bytestring, containers, directory + , ghcjs-perch, mtl, transformers, transient, transient-universe + }: + mkDerivation { + pname = "ghcjs-hplay"; + version = "0.4.1"; + sha256 = "0589b76f6411abcf05a61a3f2b9d2d25064d5c1140dabf14b4a5d6aca0162b2b"; + libraryHaskellDepends = [ + base bytestring containers directory ghcjs-perch mtl transformers + transient transient-universe + ]; + homepage = "https://github.com/transient-haskell/ghcjs-hplay"; + description = "Client-side web EDSL for transient nodes running in the web browser"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ghcjs-perch" = callPackage ({ mkDerivation, base, transformers }: mkDerivation { @@ -71659,6 +71858,7 @@ self: { homepage = "https://toktok.github.io/"; description = "Various Github helper utilities"; license = stdenv.lib.licenses.agpl3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "github-types" = callPackage @@ -75885,6 +76085,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "google-maps-geocoding" = callPackage + ({ mkDerivation, aeson, base, http-client, servant, servant-client + , text + }: + mkDerivation { + pname = "google-maps-geocoding"; + version = "0.1.0.0"; + sha256 = "375204744bebde75f9d249dc535d6b3199b342c6e68e452b7af4a3ac55521ef5"; + revision = "1"; + editedCabalFile = "293782aef4b6465cfe154b1601db24c5720a444c802f5a454fa06f04f0549614"; + libraryHaskellDepends = [ + aeson base http-client servant servant-client text + ]; + homepage = "https://github.com/mpilgrem/google-maps-geocoding#readme"; + description = "Google Maps Geocoding API bindings"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "google-oauth2" = callPackage ({ mkDerivation, aeson, base, bytestring, hspec, HTTP, http-conduit , http-types, load-env @@ -76973,10 +77191,8 @@ self: { }: mkDerivation { pname = "graphql-api"; - version = "0.1.1"; - sha256 = "e8d19197ff982e111ec199b411faf78e2800778b82c3c0147f1ef35615522a7d"; - revision = "1"; - editedCabalFile = "593742fa27cf4b14bcb88ced31b9af3a0567a5fab700e18e2f47f49a6c5fd1a9"; + version = "0.1.2"; + sha256 = "8620df9b4750b3b6003d3efe6ba74e27581f3df042c7333ce0bd9c6e9e2e8c13"; libraryHaskellDepends = [ aeson attoparsec base containers exceptions protolude QuickCheck scientific text transformers @@ -76989,7 +77205,7 @@ self: { attoparsec base criterion exceptions protolude transformers ]; homepage = "https://github.com/jml/graphql-api#readme"; - description = "Write type-safe GraphQL services in Haskell"; + description = "Sketch of GraphQL stuff"; license = stdenv.lib.licenses.asl20; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -85321,23 +85537,22 @@ self: { "hasmin" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers, doctest - , doctest-discover, gitrev, hopfli, hspec, hspec-attoparsec - , mainland-pretty, matrix, mtl, numbers, optparse-applicative - , parsers, QuickCheck, semigroups, text + , doctest-discover, gitrev, hopfli, hspec, hspec-attoparsec, matrix + , mtl, numbers, optparse-applicative, parsers, QuickCheck, text }: mkDerivation { pname = "hasmin"; - version = "0.3.0.1"; - sha256 = "b4b7b8fbe3553a2b93de7a7f3a90b9e8a5410a5e79f59db15e1f08ef62777e38"; + version = "0.3.1.3"; + sha256 = "b5297b795fba11f2644c9211b60cf535ca8d67aea6059714e7948d8261ddc9d8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - attoparsec base bytestring containers mainland-pretty matrix mtl - numbers parsers semigroups text + attoparsec base bytestring containers matrix mtl numbers parsers + text ]; executableHaskellDepends = [ - attoparsec base bytestring containers gitrev hopfli mainland-pretty - matrix mtl numbers optparse-applicative parsers text + attoparsec base bytestring containers gitrev hopfli matrix mtl + numbers optparse-applicative parsers text ]; testHaskellDepends = [ attoparsec base doctest doctest-discover hspec hspec-attoparsec mtl @@ -88247,8 +88462,8 @@ self: { }: mkDerivation { pname = "hexpat"; - version = "0.20.9"; - sha256 = "5d1c075f1ae00be2e80c0018b522a351b2f4ef73b9baca1113ee80e554449d9d"; + version = "0.20.10"; + sha256 = "39e6a1a30e80873165c3287a5b84de325c0b1dee1ddfd271daa360c1b15e0e2e"; libraryHaskellDepends = [ base bytestring containers deepseq List text transformers utf8-string @@ -88829,6 +89044,33 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hgis" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, binary, bytestring, cairo + , Chart, Chart-cairo, Chart-diagrams, colour, composition + , data-binary-ieee754, data-default, directory, filepath, hspec + , lens, monad-loops, optparse-applicative, transformers + }: + mkDerivation { + pname = "hgis"; + version = "0.1.1.2"; + sha256 = "fe9ba90e951533980aff909f6c53a33d2e1960ddb5eb547a4650564a0ee4bb5f"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-wl-pprint base binary bytestring Chart Chart-cairo + Chart-diagrams colour composition data-binary-ieee754 data-default + directory filepath lens monad-loops optparse-applicative + transformers + ]; + libraryPkgconfigDepends = [ cairo ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base hspec ]; + homepage = "https://github.com/vmchale/hgis#readme"; + description = "Package and command-line for GIS with Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) cairo;}; + "hgithub" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring , bytestring, case-insensitive, cmdargs, directory, http-enumerator @@ -89289,6 +89531,7 @@ self: { homepage = "https://github.com/agrafix/highjson"; description = "Derive swagger instances from highjson specs"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "highjson-th" = callPackage @@ -89310,6 +89553,7 @@ self: { homepage = "https://github.com/agrafix/highjson"; description = "Template Haskell helpers for highjson specs"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "highlight-versions" = callPackage @@ -92542,6 +92786,7 @@ self: { homepage = "https://github.com/ciez/hora"; description = "date time"; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "horizon" = callPackage @@ -97820,6 +98065,37 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "http-client_0_4_31_2" = callPackage + ({ mkDerivation, array, async, base, base64-bytestring + , blaze-builder, bytestring, case-insensitive, containers, cookie + , data-default-class, deepseq, directory, exceptions, filepath + , ghc-prim, hspec, http-types, mime-types, monad-control, network + , network-uri, random, streaming-commons, text, time, transformers + , zlib + }: + mkDerivation { + pname = "http-client"; + version = "0.4.31.2"; + sha256 = "16410148a9705677cdd89510192caf1abd3460db2a17ce0c2fafd7bd0c15d88b"; + libraryHaskellDepends = [ + array base base64-bytestring blaze-builder bytestring + case-insensitive containers cookie data-default-class deepseq + exceptions filepath ghc-prim http-types mime-types network + network-uri random streaming-commons text time transformers + ]; + testHaskellDepends = [ + async base base64-bytestring blaze-builder bytestring + case-insensitive containers deepseq directory hspec http-types + monad-control network network-uri streaming-commons text time + transformers zlib + ]; + doCheck = false; + homepage = "https://github.com/snoyberg/http-client"; + description = "An HTTP client engine, intended as a base layer for more user-friendly packages"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "http-client" = callPackage ({ mkDerivation, array, async, base, base64-bytestring , blaze-builder, bytestring, case-insensitive, containers, cookie @@ -97981,6 +98257,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "http-client-tls_0_2_4_1" = callPackage + ({ mkDerivation, base, bytestring, connection, data-default-class + , hspec, http-client, http-types, network, tls + }: + mkDerivation { + pname = "http-client-tls"; + version = "0.2.4.1"; + sha256 = "8dc85884e15cd32f59a47e11861d78566c6ccb202e8d317403b784278f628ba3"; + revision = "1"; + editedCabalFile = "26f1b0cf1b449df4fce7c4531444ff06ccfacae528d20c5470461ecc4058f56c"; + libraryHaskellDepends = [ + base bytestring connection data-default-class http-client network + tls + ]; + testHaskellDepends = [ base hspec http-client http-types ]; + doCheck = false; + homepage = "https://github.com/snoyberg/http-client"; + description = "http-client backend using the connection package and tls library"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "http-client-tls" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, connection , containers, criterion, cryptonite, data-default-class, exceptions @@ -98256,6 +98554,7 @@ self: { homepage = "https://github.com/myfreeweb/http-link-header"; description = "A parser and writer for the HTTP Link header as specified in RFC 5988 \"Web Linking\""; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "http-listen" = callPackage @@ -102890,21 +103189,22 @@ self: { }) {}; "influxdb" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, containers - , data-default-class, dlist, exceptions, http-client, HUnit, mtl - , network-uri, retry, scientific, tagged, tasty, tasty-hunit - , tasty-quickcheck, tasty-th, template-haskell, text, vector + ({ mkDerivation, aeson, attoparsec, base, bytestring, clock + , containers, foldl, http-client, http-types, HUnit, lens, mtl + , network, optional-args, scientific, tasty, tasty-hunit + , tasty-quickcheck, tasty-th, text, time, unordered-containers + , vector }: mkDerivation { pname = "influxdb"; - version = "0.10.0"; - sha256 = "063754458bbceb4a89e70c26a979f47e2c632a0ccaf93b53360870d44c5268bb"; + version = "1.0.0"; + sha256 = "6b86e068856689490a006dcaeac1f47fc8deb3d678bd0ddd9dad7c78cff396ad"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson attoparsec base bytestring containers data-default-class - dlist exceptions http-client mtl network-uri retry scientific - tagged template-haskell text vector + aeson attoparsec base bytestring clock containers foldl http-client + http-types lens network optional-args scientific text time + unordered-containers vector ]; testHaskellDepends = [ base http-client HUnit mtl tasty tasty-hunit tasty-quickcheck @@ -103865,7 +104165,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "intro_0_1_0_9" = callPackage + "intro_0_1_0_10" = callPackage ({ mkDerivation, base, bifunctors, binary, bytestring, containers , deepseq, dlist, extra, hashable, lens, mtl, safe , string-conversions, tagged, text, transformers @@ -103873,8 +104173,8 @@ self: { }: mkDerivation { pname = "intro"; - version = "0.1.0.9"; - sha256 = "963620591271c3a8e39cfc6b222b4ea9266da0121887298de7e6e59962d422ae"; + version = "0.1.0.10"; + sha256 = "1c8c6c7bd6ff10eb10d26cea7a04c2a048b8128eb7fc154d931f7c17201741d9"; libraryHaskellDepends = [ base bifunctors binary bytestring containers deepseq dlist extra hashable mtl safe string-conversions tagged text transformers @@ -106070,6 +106370,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "jenga" = callPackage + ({ mkDerivation, aeson, base, bytestring, Cabal, containers + , http-conduit, http-types, text + }: + mkDerivation { + pname = "jenga"; + version = "0.1.0.0"; + sha256 = "4468d8a1c55009b146b8294ab9ed677b5c7a5e3d0fbae1825a5aebcd509412d0"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring Cabal containers http-conduit http-types text + ]; + executableHaskellDepends = [ base text ]; + homepage = "https://github.com/erikd/jenga"; + description = "Generate a cabal freeze file from a stack.yaml"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "jespresso" = callPackage ({ mkDerivation, arrows, base, bytestring, cmdargs , data-default-class, data-default-instances-base, Diff, directory @@ -106354,6 +106674,7 @@ self: { homepage = "http://github.com/tekul/jose-jwt"; description = "JSON Object Signing and Encryption Library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "jpeg" = callPackage @@ -108742,8 +109063,8 @@ self: { }: mkDerivation { pname = "keysafe"; - version = "0.20170122"; - sha256 = "39349c641898e77e340d171263a9b2d860089a4ae7a6068a563e8e6647a1fd7e"; + version = "0.20170303"; + sha256 = "1785ee897795fcde79ef96742b473f84705335a22d6f033981163cf8a3a9b45a"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -117056,15 +117377,15 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "lucid_2_9_8" = callPackage + "lucid_2_9_8_1" = callPackage ({ mkDerivation, base, bifunctors, blaze-builder, bytestring , containers, criterion, deepseq, hashable, hspec, HUnit, mmorph , mtl, parsec, text, transformers, unordered-containers }: mkDerivation { pname = "lucid"; - version = "2.9.8"; - sha256 = "9ab498348a68317d2b995c29e0963895d0943de571e9164a28fc3f30ae7f9b72"; + version = "2.9.8.1"; + sha256 = "eba0e020ce560c5b6146bd7786d8c531026c5c898590e46f7d94a8019740da08"; libraryHaskellDepends = [ base blaze-builder bytestring containers hashable mmorph mtl text transformers unordered-containers @@ -117073,7 +117394,7 @@ self: { base bifunctors hspec HUnit mtl parsec text ]; benchmarkHaskellDepends = [ - base blaze-builder bytestring criterion deepseq text + base blaze-builder bytestring criterion deepseq text transformers ]; homepage = "https://github.com/chrisdone/lucid"; description = "Clear to write, read and edit DSL for HTML"; @@ -117623,6 +117944,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "machines-amazonka" = callPackage + ({ mkDerivation, amazonka, amazonka-core, amazonka-ec2, amazonka-s3 + , amazonka-sts, base, concurrent-machines, containers, exceptions + , focus, hashable, liblawless, lifted-async, list-t, monad-control + , mtl, resourcet, stm, stm-containers, time, transformers + }: + mkDerivation { + pname = "machines-amazonka"; + version = "0.4.1"; + sha256 = "cce59823213d25be8bc6b570baaf2f2af5bcbbb5ccc79443afa6542586d5d6bd"; + libraryHaskellDepends = [ + amazonka amazonka-core amazonka-ec2 amazonka-s3 amazonka-sts base + concurrent-machines containers exceptions focus hashable liblawless + lifted-async list-t monad-control mtl resourcet stm stm-containers + time transformers + ]; + description = "Machine transducers for Amazonka calls"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "machines-binary" = callPackage ({ mkDerivation, base, binary, bytestring, machines }: mkDerivation { @@ -118969,18 +119311,18 @@ self: { "marvin" = callPackage ({ mkDerivation, aeson, base, bytestring, conduit, configurator - , deepseq, directory, filepath, hashable, haskeline, http-client - , http-client-tls, http-types, irc-conduit, lens, lifted-async - , lifted-base, marvin-interpolate, monad-control, monad-logger - , monad-loops, mtl, mustache, network-uri, optparse-applicative - , random, stm, text, text-icu, time, transformers - , transformers-base, unordered-containers, vector, wai, warp - , warp-tls, websockets, wreq, wuss + , deepseq, directory, filepath, hashable, haskeline, hspec + , http-client, http-client-tls, http-types, irc-conduit, lens + , lifted-async, lifted-base, marvin-interpolate, monad-control + , monad-logger, monad-loops, mtl, mustache, network-uri + , optparse-applicative, random, stm, text, text-icu, time + , transformers, transformers-base, unordered-containers, vector + , wai, warp, warp-tls, websockets, wreq, wuss }: mkDerivation { pname = "marvin"; - version = "0.2.0"; - sha256 = "7928adc11b0fe646db3bb20333c6dcea09664a7b6a341de9d5ed3bfb639e6301"; + version = "0.2.2"; + sha256 = "87c5aa6059c7dbf6c8d20d31d3a242bc68aa888313453448ca520f726272dbbb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -118995,6 +119337,7 @@ self: { aeson base bytestring configurator directory filepath mustache optparse-applicative text ]; + testHaskellDepends = [ base hspec ]; homepage = "https://marvin.readthedocs.io"; description = "A framework for modular, portable chat bots"; license = stdenv.lib.licenses.bsd3; @@ -119778,6 +120121,7 @@ self: { homepage = "https://github.com/lindenbaum/mediabus"; description = "Multimedia streaming on top of Conduit"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "mediabus-rtp" = callPackage @@ -119816,6 +120160,7 @@ self: { homepage = "https://github.com/lindenbaum/mediabus-rtp"; description = "Receive and Send RTP Packets"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "median-stream" = callPackage @@ -122955,6 +123300,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "monad-skeleton_0_1_3" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "monad-skeleton"; + version = "0.1.3"; + sha256 = "4de3aee29408f98fe0f3dc6161d98e13a5292a67b23cb80e7f1875eead7d8a40"; + libraryHaskellDepends = [ base ]; + homepage = "https://github.com/fumieval/monad-skeleton"; + description = "Monads of program skeleta"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "monad-st" = callPackage ({ mkDerivation, base, transformers }: mkDerivation { @@ -124108,6 +124466,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "mosquitto-hs" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "mosquitto-hs"; + version = "0.1.0.0"; + sha256 = "964a6f05bbbcf3c4797ca35d82c99c21d257b8ce252397ffc87dbe8482bb0031"; + libraryHaskellDepends = [ base ]; + homepage = "https://github.com/anishray/mosquitto-hs#readme"; + description = "Mosquitto client library bindings"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "mount" = callPackage ({ mkDerivation, base, bytestring }: mkDerivation { @@ -130384,6 +130754,7 @@ self: { homepage = "https://github.com/tfausak/octane#readme"; description = "Parse Rocket League replays"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "octohat" = callPackage @@ -133405,6 +133776,36 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {inherit (pkgs.gnome2) pango;}; + "pansite" = callPackage + ({ mkDerivation, aeson, base, blaze-html, bytestring, data-default + , directory, doctest, filepath, Glob, hspec, http-types, MissingH + , optparse-applicative, pandoc, pandoc-types, shake, split + , template-haskell, text, time, unordered-containers, vcs-revision + , vector, wai, wai-logger, warp, yaml + }: + mkDerivation { + pname = "pansite"; + version = "0.1.0.0"; + sha256 = "656dbab42493e28e112650ba1095d2f0cde42a06c47a640714be969cd9a3a8c2"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring data-default split text unordered-containers + vector yaml + ]; + executableHaskellDepends = [ + aeson base blaze-html bytestring data-default directory filepath + http-types MissingH optparse-applicative pandoc pandoc-types shake + template-haskell text time unordered-containers vcs-revision wai + wai-logger warp + ]; + testHaskellDepends = [ base doctest Glob hspec ]; + homepage = "https://github.com/rcook/pansite#readme"; + description = "Pansite: a simple web site management tool"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "papa" = callPackage ({ mkDerivation, base, directory, doctest, filepath, papa-base , papa-base-export, papa-base-implement, papa-bifunctors @@ -137286,6 +137687,30 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "pipes_4_2_0" = callPackage + ({ mkDerivation, base, criterion, mmorph, mtl, optparse-applicative + , QuickCheck, test-framework, test-framework-quickcheck2 + , transformers + }: + mkDerivation { + pname = "pipes"; + version = "4.2.0"; + sha256 = "1e407197e94c3c8642fd2c7b4f8e5a3e537844dff2780c396464a47ae0ec0124"; + revision = "1"; + editedCabalFile = "1ce0aac0a280be337215bcf2a8b73b081a948bfb93e24045a7e3a3c3e6adfad0"; + libraryHaskellDepends = [ base mmorph mtl transformers ]; + testHaskellDepends = [ + base mtl QuickCheck test-framework test-framework-quickcheck2 + transformers + ]; + benchmarkHaskellDepends = [ + base criterion mtl optparse-applicative transformers + ]; + description = "Compositional pipelines"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pipes" = callPackage ({ mkDerivation, base, criterion, exceptions, mmorph, mtl , optparse-applicative, QuickCheck, test-framework @@ -137882,6 +138307,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "pipes-lines" = callPackage + ({ mkDerivation, base, bytestring, lens, mtl, pipes, pipes-group + , QuickCheck, text + }: + mkDerivation { + pname = "pipes-lines"; + version = "1.0.3.1"; + sha256 = "6781737f9686f4e53d48eabffe8079b3cc608a4603da98ebdb34d34bf24a1efc"; + libraryHaskellDepends = [ base bytestring pipes pipes-group text ]; + testHaskellDepends = [ + base bytestring lens mtl pipes pipes-group QuickCheck + ]; + homepage = "https://github.com/mindreader/pipes-lines"; + description = "Pipes for grouping by lines with carriage returns"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "pipes-lzma" = callPackage ({ mkDerivation, base, bytestring, lzma, pipes, pipes-bytestring , QuickCheck @@ -142940,13 +143382,14 @@ self: { }) {}; "protolude-lifted" = callPackage - ({ mkDerivation, base, lifted-async, lifted-base, protolude }: + ({ mkDerivation, async, base, lifted-async, lifted-base, protolude + }: mkDerivation { pname = "protolude-lifted"; - version = "0.1.0.1"; - sha256 = "1cf719477b66ad04fca3c5322fc3e9b27d6208bf677cbab84b4577cdce83364f"; + version = "0.1.1.0"; + sha256 = "82a83f5b6ba7f16be05dfaa5e490b6fe65b93fe3b6b3dbf8969f7bda9f2bf532"; libraryHaskellDepends = [ - base lifted-async lifted-base protolude + async base lifted-async lifted-base protolude ]; homepage = "https://github.com/pbogdan/protolude-lifted"; description = "Protolude with lifted-base and lifted-async"; @@ -143686,7 +144129,6 @@ self: { homepage = "http://www.purescript.org/"; description = "PureScript Programming Language Compiler"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "purescript-bridge" = callPackage @@ -143940,6 +144382,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "pushover" = callPackage + ({ mkDerivation, aeson, base, bytestring, exceptions, http-client + , http-client-tls, mtl, tasty, tasty-hunit, text, time + , transformers, uri-encode + }: + mkDerivation { + pname = "pushover"; + version = "0.1.0.1"; + sha256 = "8c3168b78d79384eeabfa83ba810314c1c81adcd70a491c76ad9af016646262a"; + libraryHaskellDepends = [ + aeson base bytestring exceptions http-client http-client-tls mtl + text time transformers uri-encode + ]; + testHaskellDepends = [ + base bytestring http-client tasty tasty-hunit text time + ]; + homepage = "https://github.com/DanMeakin/pushover"; + description = "A Haskell Pushover API library"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "putlenses" = callPackage ({ mkDerivation, base, containers, ghc-prim, lens, mtl, QuickCheck , random, safe, split, template-haskell, transformers @@ -144962,6 +145425,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "quickcheck-special_0_1_0_4" = callPackage + ({ mkDerivation, base, bytestring, ieee754, QuickCheck, scientific + , text + }: + mkDerivation { + pname = "quickcheck-special"; + version = "0.1.0.4"; + sha256 = "9a3f3a24b6595aaa12b4c61644e329c82457f2d49ee913986b08378dacba67b7"; + libraryHaskellDepends = [ + base bytestring ieee754 QuickCheck scientific text + ]; + homepage = "https://github.com/minad/quickcheck-special#readme"; + description = "Edge cases and special values for QuickCheck Arbitrary instances"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "quickcheck-string-random" = callPackage ({ mkDerivation, base, QuickCheck, string-random, tasty , tasty-quickcheck, text @@ -151803,6 +152283,7 @@ self: { homepage = "http://github.com/agrafix/rocksdb-haskell"; description = "Haskell bindings to RocksDB"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {inherit (pkgs) rocksdb;}; "roguestar" = callPackage @@ -153235,6 +153716,7 @@ self: { homepage = "https://github.com/NCrashed/safecopy"; description = "Binary serialization with version control"; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "safeint" = callPackage @@ -156386,30 +156868,28 @@ self: { }) {}; "serokell-util" = callPackage - ({ mkDerivation, acid-state, aeson, aeson-extra, base - , base16-bytestring, base64-bytestring, binary, binary-orphans - , bytestring, cereal, cereal-vector, clock, containers - , data-msgpack, deepseq, directory, either, exceptions, extra - , filepath, formatting, hashable, hspec, lens, log-warper + ({ mkDerivation, acid-state, aeson, aeson-extra, ansi-terminal + , base, base16-bytestring, base64-bytestring, binary + , binary-orphans, bytestring, cereal, cereal-vector, clock + , containers, data-msgpack, deepseq, directory, either, exceptions + , extra, filepath, formatting, hashable, hspec, lens, log-warper , monad-control, mtl, optparse-applicative, parsec, QuickCheck , quickcheck-instances, safecopy, scientific, semigroups, stm , template-haskell, text, text-format, time-units, transformers - , unordered-containers, vector, yaml + , universum, unordered-containers, vector, yaml }: mkDerivation { pname = "serokell-util"; - version = "0.1.3.5"; - sha256 = "4d39b93b18636db11004b7b03fc118da8417ff9abe4db32164c200da23a22391"; - revision = "1"; - editedCabalFile = "3bcba06004dd1f2cfe23b7321917dd53e08efff1c65e2c48898d773b91ce5a35"; + version = "0.1.4.0"; + sha256 = "ab37e7b6833fa3499501c82133dfd640875326c1b0ba96df3cf7b0380c2215cf"; libraryHaskellDepends = [ - acid-state aeson aeson-extra base base16-bytestring + acid-state aeson aeson-extra ansi-terminal base base16-bytestring base64-bytestring binary binary-orphans bytestring cereal cereal-vector clock containers data-msgpack deepseq directory either exceptions extra filepath formatting hashable lens log-warper monad-control mtl optparse-applicative parsec QuickCheck quickcheck-instances safecopy scientific semigroups stm - template-haskell text text-format time-units transformers + template-haskell text text-format time-units transformers universum unordered-containers vector yaml ]; testHaskellDepends = [ @@ -157051,6 +157531,7 @@ self: { homepage = "http://haskell-servant.readthedocs.org/"; description = "generate API docs for your servant webservice"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "servant-docs_0_10" = callPackage @@ -158048,8 +158529,8 @@ self: { }: mkDerivation { pname = "serversession-backend-persistent"; - version = "1.0.2"; - sha256 = "19dfb2c55d64168e3fa2ceb6476ac55c67e69a750e0a39b400d9b3b0fbd3be4b"; + version = "1.0.3"; + sha256 = "689eb02ada5f1ad8ce0e0c43ae0931953533fab1f65d10d3a7c35dd01688c5ae"; libraryHaskellDepends = [ aeson base base64-bytestring bytestring cereal path-pieces persistent serversession tagged text time transformers @@ -158074,8 +158555,8 @@ self: { }: mkDerivation { pname = "serversession-backend-redis"; - version = "1.0.1"; - sha256 = "b4b30860fa2e431fd7101b3fb5541e7a687bce71886ca164564c35fbf104af4f"; + version = "1.0.2"; + sha256 = "d7746682f83e796bb1de3d14dd26d20c3c0723d7683af93e58d8a0a57b9bf917"; libraryHaskellDepends = [ base bytestring hedis path-pieces serversession tagged text time transformers unordered-containers @@ -158097,8 +158578,8 @@ self: { }: mkDerivation { pname = "serversession-frontend-snap"; - version = "1.0"; - sha256 = "91719ff595a845f26a670c4f41c9a1d405d78ee4f213e666fa2e98ede46049d8"; + version = "1.0.1"; + sha256 = "bb2476bb04907b0f2df1be9ef8c7a6c2aa984b8a06fe4bd6342ed990c2868d2c"; libraryHaskellDepends = [ base bytestring nonce path-pieces serversession snap snap-core text time transformers unordered-containers @@ -159313,10 +159794,8 @@ self: { }: mkDerivation { pname = "shelly"; - version = "1.6.8.1"; - sha256 = "e5a32f7552779667d1f0164d271e99c9ddcabdf1a7a1503cd6fc8ba0bb4445cd"; - revision = "1"; - editedCabalFile = "455095701152d4564c2b0a6e553f3add129b7bd0a91174a3bc2bc2292bdd5501"; + version = "1.6.8.3"; + sha256 = "78ae736c22455b40176b47003be4ea9ea2d02b440f921a1a022e8536833a8487"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -159342,8 +159821,8 @@ self: { }: mkDerivation { pname = "shelly-extra"; - version = "0.3.0.1"; - sha256 = "0502062de043c0322d3cddf379847c1148e515c4fa18f19db835210d422d85d5"; + version = "0.3.0.2"; + sha256 = "19d39c38a90fb19d9f79a648d72f73d0a5ec2bd3788abf7dac3d77da19ae5446"; libraryHaskellDepends = [ async base mtl SafeSemaphore shelly ]; testHaskellDepends = [ async base hspec HUnit mtl SafeSemaphore shelly text @@ -159765,6 +160244,7 @@ self: { homepage = "http://code.haskell.org/~bkomuves/"; description = "Thom polynomials of second order Thom-Boardman singularities"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "sign" = callPackage @@ -167519,8 +167999,61 @@ self: { }: mkDerivation { pname = "store"; - version = "0.3.1"; - sha256 = "ec1005ebaf7334f6e5166315f8406553c94cffa8e06bc1d60f372c0d46ceda90"; + version = "0.4.0"; + sha256 = "bdbbc77a10941ee721c4c3fb456ec236ada3be51a890415c00a57cd4f06973cc"; + libraryHaskellDepends = [ + array async base base-orphans base64-bytestring bytestring conduit + containers contravariant cryptohash deepseq directory filepath free + ghc-prim hashable hspec hspec-smallcheck integer-gmp lifted-base + monad-control mono-traversable network primitive resourcet safe + semigroups smallcheck store-core streaming-commons syb + template-haskell text th-lift th-lift-instances th-orphans + th-reify-many th-utilities time transformers unordered-containers + vector void + ]; + testHaskellDepends = [ + array async base base-orphans base64-bytestring bytestring cereal + cereal-vector conduit containers contravariant criterion cryptohash + deepseq directory filepath free ghc-prim hashable hspec + hspec-smallcheck integer-gmp lifted-base monad-control + mono-traversable network primitive resourcet safe semigroups + smallcheck store-core streaming-commons syb template-haskell text + th-lift th-lift-instances th-orphans th-reify-many th-utilities + time transformers unordered-containers vector + vector-binary-instances void weigh + ]; + benchmarkHaskellDepends = [ + array async base base-orphans base64-bytestring bytestring conduit + containers contravariant criterion cryptohash deepseq directory + filepath free ghc-prim hashable hspec hspec-smallcheck integer-gmp + lifted-base monad-control mono-traversable network primitive + resourcet safe semigroups smallcheck store-core streaming-commons + syb template-haskell text th-lift th-lift-instances th-orphans + th-reify-many th-utilities time transformers unordered-containers + vector void + ]; + homepage = "https://github.com/fpco/store#readme"; + description = "Fast binary serialization"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "store_0_4_1" = callPackage + ({ mkDerivation, array, async, base, base-orphans + , base64-bytestring, bytestring, cereal, cereal-vector, conduit + , containers, contravariant, criterion, cryptohash, deepseq + , directory, filepath, free, ghc-prim, hashable, hspec + , hspec-smallcheck, integer-gmp, lifted-base, monad-control + , mono-traversable, network, primitive, resourcet, safe, semigroups + , smallcheck, store-core, streaming-commons, syb, template-haskell + , text, th-lift, th-lift-instances, th-orphans, th-reify-many + , th-utilities, time, transformers, unordered-containers, vector + , vector-binary-instances, void, weigh + }: + mkDerivation { + pname = "store"; + version = "0.4.1"; + sha256 = "aee7f803b9338569b089d01c3ab3ec1384d9ae55d1ebb6c867faefb34656bdb2"; libraryHaskellDepends = [ array async base base-orphans base64-bytestring bytestring conduit containers contravariant cryptohash deepseq directory filepath free @@ -167564,8 +168097,8 @@ self: { }: mkDerivation { pname = "store-core"; - version = "0.3"; - sha256 = "8793230b634a310a91db98727dfa6f34a0b7f5ded55985342066d33d98507087"; + version = "0.4"; + sha256 = "aa8df93b9c5aba42b800b17a6cfd6bbdeef9369dc71ef684108d424a88ecf4f5"; libraryHaskellDepends = [ base bytestring fail ghc-prim primitive text transformers ]; @@ -167616,6 +168149,31 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "stratosphere_0_4_1" = callPackage + ({ mkDerivation, aeson, aeson-pretty, base, bytestring, directory + , hashable, hlint, lens, tasty, tasty-hspec, template-haskell, text + , unordered-containers + }: + mkDerivation { + pname = "stratosphere"; + version = "0.4.1"; + sha256 = "7a8a7c8bbe4c154c1a8def4a0bb7384ff9f60198ce7a8583063c7cd0c84bc790"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson aeson-pretty base bytestring hashable lens template-haskell + text unordered-containers + ]; + testHaskellDepends = [ + aeson aeson-pretty base bytestring directory hashable hlint lens + tasty tasty-hspec template-haskell text unordered-containers + ]; + homepage = "https://github.com/frontrowed/stratosphere#readme"; + description = "EDSL for AWS CloudFormation"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "stratum-tool" = callPackage ({ mkDerivation, aeson, async, base, bytestring, bytestring-builder , cmdargs, connection, containers, curl, curl-aeson, network, stm @@ -169543,6 +170101,7 @@ self: { homepage = "https://github.com/GetShopTV/swagger2"; description = "Swagger 2.0 data model"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "swapper" = callPackage @@ -171887,6 +172446,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "tasty-auto_0_2_0_0" = callPackage + ({ mkDerivation, base, directory, filepath, tasty, tasty-hspec + , tasty-hunit, tasty-quickcheck, tasty-smallcheck + }: + mkDerivation { + pname = "tasty-auto"; + version = "0.2.0.0"; + sha256 = "b24e6f45aca98bc83316261d21ac5d9094aede0c5c7179c16ef2f69dfa3cf65a"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base directory filepath ]; + executableHaskellDepends = [ base directory filepath ]; + testHaskellDepends = [ + base directory filepath tasty tasty-hspec tasty-hunit + tasty-quickcheck tasty-smallcheck + ]; + homepage = "https://github.com/minad/tasty-auto#readme"; + description = "Auto discovery for Tasty with support for ingredients and test tree generation"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "tasty-dejafu" = callPackage ({ mkDerivation, base, dejafu, tagged, tasty }: mkDerivation { @@ -172093,6 +172674,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "tasty-jenkins-xml" = callPackage + ({ mkDerivation, base, bytestring, directory, hlint, hspec + , io-capture, mockery, tasty, tasty-ant-xml, tasty-hunit, unix + }: + mkDerivation { + pname = "tasty-jenkins-xml"; + version = "0.2.0.0"; + sha256 = "b5f88fb4478d7d3dc1e74237fabea54d0098dc5a726752279f41c5ce0eaaade4"; + libraryHaskellDepends = [ base tasty tasty-ant-xml ]; + testHaskellDepends = [ + base bytestring directory hlint hspec io-capture mockery tasty + tasty-hunit unix + ]; + homepage = "https://github.com/IxpertaSolutions/tasty-jenkins-xml#readme"; + description = "Render tasty output to both console and XML for Jenkins"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "tasty-kat" = callPackage ({ mkDerivation, base, bytestring, mtl, tasty, tasty-hunit , tasty-quickcheck @@ -177503,6 +178103,7 @@ self: { homepage = "https://github.com/tonyday567/tower"; description = "A numeric tower"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "toxcore" = callPackage @@ -178054,6 +178655,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "transient_0_5_1" = callPackage + ({ mkDerivation, base, bytestring, containers, directory, mtl + , random, stm, time, transformers + }: + mkDerivation { + pname = "transient"; + version = "0.5.1"; + sha256 = "a6b90bed245013a7ffe61f8d6e5b0f5798dd64999c914c1f956b0d3a1c3a8d25"; + libraryHaskellDepends = [ + base bytestring containers directory mtl random stm time + transformers + ]; + homepage = "http://www.fpcomplete.com/user/agocorona"; + description = "Making composable programs with multithreading, events and distributed computing"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "transient-universe" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , directory, filepath, hashable, HTTP, iproute, mtl, network @@ -178084,6 +178703,36 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "transient-universe_0_4_1" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , directory, filepath, hashable, HTTP, iproute, mtl, network + , network-info, network-uri, process, random, stm, TCache, text + , time, transformers, transient, vector, websockets + }: + mkDerivation { + pname = "transient-universe"; + version = "0.4.1"; + sha256 = "2000815b5df5dfa3e02856e0ba3e1f408efaf4fc6365c6949c0f9cca4ad8d6fb"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring case-insensitive containers directory filepath + hashable HTTP iproute mtl network network-info network-uri process + random stm TCache text time transformers transient vector + websockets + ]; + executableHaskellDepends = [ base transformers transient ]; + testHaskellDepends = [ + base bytestring case-insensitive containers directory filepath + hashable HTTP mtl network network-info network-uri process random + stm TCache text time transformers transient vector websockets + ]; + homepage = "http://www.fpcomplete.com/user/agocorona"; + description = "Remote execution and map-reduce: distributed computing for Transient"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "translatable-intset" = callPackage ({ mkDerivation, base, fingertree }: mkDerivation { @@ -186174,6 +186823,7 @@ self: { ]; description = "Authentication middleware that secures WAI application"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "wai-middleware-cache" = callPackage @@ -188152,6 +188802,35 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "websockets_0_9_8_2" = callPackage + ({ mkDerivation, attoparsec, base, base64-bytestring, binary + , blaze-builder, bytestring, case-insensitive, containers, entropy + , HUnit, network, QuickCheck, random, SHA, test-framework + , test-framework-hunit, test-framework-quickcheck2, text + }: + mkDerivation { + pname = "websockets"; + version = "0.9.8.2"; + sha256 = "09ec17dfbf9f07da27575ce7853b0c80d87ad959c2b271f27be4c4e54615eca2"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + attoparsec base base64-bytestring binary blaze-builder bytestring + case-insensitive containers entropy network random SHA text + ]; + testHaskellDepends = [ + attoparsec base base64-bytestring binary blaze-builder bytestring + case-insensitive containers entropy HUnit network QuickCheck random + SHA test-framework test-framework-hunit test-framework-quickcheck2 + text + ]; + doCheck = false; + homepage = "http://jaspervdj.be/websockets"; + description = "A sensible and clean way to write WebSocket-capable servers in Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "websockets" = callPackage ({ mkDerivation, attoparsec, base, base64-bytestring, binary , blaze-builder, bytestring, case-insensitive, containers, entropy @@ -192256,6 +192935,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {inherit (pkgs) libyaml;}; + "yaml-combinators" = callPackage + ({ mkDerivation, aeson, base, bytestring, doctest, generics-sop + , scientific, tasty, tasty-hunit, text, transformers + , unordered-containers, vector, yaml + }: + mkDerivation { + pname = "yaml-combinators"; + version = "1.0"; + sha256 = "9997df825976d8e02ce501248dc2ab82bc4ba30510fe3511b199e4d99bd9bd17"; + libraryHaskellDepends = [ + aeson base bytestring generics-sop scientific text transformers + unordered-containers vector yaml + ]; + testHaskellDepends = [ + aeson base doctest tasty tasty-hunit unordered-containers + ]; + homepage = "https://github.com/feuerbach/yaml-combinators"; + description = "YAML parsing combinators for improved validation and error reporting"; + license = stdenv.lib.licenses.mit; + }) {}; + "yaml-config" = callPackage ({ mkDerivation, base, deepseq, hashable, QuickCheck, tasty , tasty-quickcheck, text, unordered-containers, yaml @@ -194829,6 +195529,7 @@ self: { homepage = "https://github.com/alephcloud/hs-yet-another-logger"; description = "Yet Another Logger"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "yhccore" = callPackage @@ -195938,6 +196639,32 @@ self: { homepage = "https://github.com/mrkkrp/zip"; description = "Operations on zip archives"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; + }) {}; + + "zip_0_1_9" = callPackage + ({ mkDerivation, base, bytestring, bzlib-conduit, case-insensitive + , cereal, conduit, conduit-extra, containers, digest, exceptions + , filepath, hspec, mtl, path, path-io, plan-b, QuickCheck + , resourcet, text, time, transformers + }: + mkDerivation { + pname = "zip"; + version = "0.1.9"; + sha256 = "82dd97404ff2dde034b6786838ee51a5102da31c20835d61fef3bdfe69279860"; + libraryHaskellDepends = [ + base bytestring bzlib-conduit case-insensitive cereal conduit + conduit-extra containers digest exceptions filepath mtl path + path-io plan-b resourcet text time transformers + ]; + testHaskellDepends = [ + base bytestring conduit containers exceptions filepath hspec path + path-io QuickCheck text time transformers + ]; + homepage = "https://github.com/mrkkrp/zip"; + description = "Operations on zip archives"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "zip-archive" = callPackage diff --git a/pkgs/development/interpreters/elixir/default.nix b/pkgs/development/interpreters/elixir/default.nix index 2d27185a9fca2..31a58bcde11d9 100644 --- a/pkgs/development/interpreters/elixir/default.nix +++ b/pkgs/development/interpreters/elixir/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "elixir-${version}"; - version = "1.4.0"; + version = "1.4.2"; src = fetchFromGitHub { owner = "elixir-lang"; repo = "elixir"; rev = "v${version}"; - sha256 = "1q05f1s581nk475a8d9hakh2irgvsg50x3084yjzhrcmmykwnysi"; + sha256 = "0jqww3l5jgqvlqpp6lh8i55v23a5imw4giarr05gsl7imv2qqshz"; }; buildInputs = [ erlang rebar makeWrapper ]; diff --git a/pkgs/development/interpreters/python/mk-python-derivation.nix b/pkgs/development/interpreters/python/mk-python-derivation.nix index 69eea056c7638..f30bd175daac5 100644 --- a/pkgs/development/interpreters/python/mk-python-derivation.nix +++ b/pkgs/development/interpreters/python/mk-python-derivation.nix @@ -93,7 +93,7 @@ python.stdenv.mkDerivation (builtins.removeAttrs attrs ["disabled"] // { platforms = python.meta.platforms; } // meta // { # add extra maintainer(s) to every package - maintainers = (meta.maintainers or []) ++ [ chaoflow domenkozar ]; + maintainers = (meta.maintainers or []) ++ [ chaoflow ]; # a marker for release utilities to discover python packages isBuildPythonPackage = python.meta.platforms; }; diff --git a/pkgs/development/interpreters/racket/default.nix b/pkgs/development/interpreters/racket/default.nix index 2bf7ec5d2dfec..6f3df4e866d64 100644 --- a/pkgs/development/interpreters/racket/default.nix +++ b/pkgs/development/interpreters/racket/default.nix @@ -80,6 +80,6 @@ stdenv.mkDerivation rec { homepage = http://racket-lang.org/; license = licenses.lgpl3; maintainers = with maintainers; [ kkallio henrytill vrthra ]; - platforms = platforms.unix; + platforms = platforms.x86_64; }; } diff --git a/pkgs/development/libraries/gnutls-kdh/3.5.nix b/pkgs/development/libraries/gnutls-kdh/3.5.nix new file mode 100644 index 0000000000000..e245496c63acd --- /dev/null +++ b/pkgs/development/libraries/gnutls-kdh/3.5.nix @@ -0,0 +1,12 @@ +{ callPackage, fetchFromGitHub, autoreconfHook, ... } @ args: + +callPackage ./generic.nix (args // rec { + version = "1.0"; + + src = fetchFromGitHub { + owner = "arpa2"; + repo = "gnutls-kdh"; + rev = "ff3bb36f70a746f28554641d466e124098dfcb25"; + sha256 = "1rr3p4r145lnprxn8hqyyzh3qkj3idsbqp08g07ndrhqnxq0k0sw"; + }; +}) diff --git a/pkgs/development/libraries/gnutls-kdh/generic.nix b/pkgs/development/libraries/gnutls-kdh/generic.nix new file mode 100644 index 0000000000000..0e8457a8c54b8 --- /dev/null +++ b/pkgs/development/libraries/gnutls-kdh/generic.nix @@ -0,0 +1,92 @@ +{ lib, fetchurl, stdenv, zlib, lzo, libtasn1, nettle, pkgconfig, lzip +, guileBindings, guile, perl, gmp, autogen, libidn, p11_kit, unbound, libiconv +, tpmSupport ? true, trousers, nettools, bash, gperftools, gperf, gettext, automake +, yacc, texinfo + +# Version dependent args +, version, src, patches ? [], postPatch ? "", nativeBuildInputs ? [] +, ...}: + +assert guileBindings -> guile != null; +let + # XXX: Gnulib's `test-select' fails on FreeBSD: + # http://hydra.nixos.org/build/2962084/nixlog/1/raw . + doCheck = !stdenv.isFreeBSD && !stdenv.isDarwin && lib.versionAtLeast version "3.4"; +in +stdenv.mkDerivation { + name = "gnutls-kdh-${version}"; + + inherit src patches; + + outputs = [ "bin" "dev" "out" ]; + + patchPhase = '' + # rm -fR ./po + # substituteInPlace configure "po/Makefile.in" " " + substituteInPlace doc/manpages/Makefile.in --replace "gnutls_cipher_list.3" " " + substituteInPlace doc/manpages/Makefile.in --replace "gnutls_cipher_self_test.3" " " + substituteInPlace doc/manpages/Makefile.in --replace "gnutls_digest_self_test.3" " " + substituteInPlace doc/manpages/Makefile.in --replace "gnutls_mac_self_test.3" " " + substituteInPlace doc/manpages/Makefile.in --replace "gnutls_pk_self_test.3" " " + printf "all: ;\n\ninstall: ;" > "po/Makefile.in" + printf "all: ;\n\ninstall: ;" > "po/Makefile.in.in" + ''; + + postPatch = lib.optionalString (lib.versionAtLeast version "3.4") '' + sed '2iecho "name constraints tests skipped due to datefudge problems"\nexit 0' \ + -i tests/cert-tests/name-constraints + '' + postPatch; + + preConfigure = "patchShebangs ."; + configureFlags = + lib.optional stdenv.isLinux "--with-default-trust-store-file=/etc/ssl/certs/ca-certificates.crt" + ++ [ + "--disable-dependency-tracking" + "--enable-fast-install" + ] ++ lib.optional guileBindings + [ "--enable-guile" "--with-guile-site-dir=\${out}/share/guile/site" ]; + + # Build of the Guile bindings is not parallel-safe. See + # <http://git.savannah.gnu.org/cgit/gnutls.git/commit/?id=330995a920037b6030ec0282b51dde3f8b493cad> + # for the actual fix. Also an apparent race in the generation of + # systemkey-args.h. + enableParallelBuilding = false; + + buildInputs = [ lzo lzip nettle libtasn1 libidn p11_kit zlib gmp + autogen gperftools gperf gettext automake yacc texinfo ] + ++ lib.optional doCheck nettools + ++ lib.optional (stdenv.isFreeBSD || stdenv.isDarwin) libiconv + ++ lib.optional (tpmSupport && stdenv.isLinux) trousers + ++ [ unbound ] + ++ lib.optional guileBindings guile; + + nativeBuildInputs = [ perl pkgconfig ] ++ nativeBuildInputs; + + #inherit doCheck; + doCheck = false; + + # Fixup broken libtool and pkgconfig files + preFixup = lib.optionalString (!stdenv.isDarwin) '' + sed ${lib.optionalString tpmSupport "-e 's,-ltspi,-L${trousers}/lib -ltspi,'"} \ + -e 's,-lz,-L${zlib.out}/lib -lz,' \ + -e 's,-L${gmp.dev}/lib,-L${gmp.out}/lib,' \ + -e 's,-lgmp,-L${gmp.out}/lib -lgmp,' \ + -i $out/lib/*.la "$dev/lib/pkgconfig/gnutls.pc" + ''; + + meta = with lib; { + description = "GnuTLS with additional TLS-KDH ciphers: Kerberos + Diffie-Hellman"; + + longDescription = '' + The ARPA2 project aims to add security. This is an enhanced + version of GnuTLS, a project that aims to develop a library which + provides a secure layer, over a reliable transport + layer. It adds TLS-KDH ciphers: Kerberos + Diffie-Hellman. + ''; + + homepage = http://www.gnu.org/software/gnutls://github.com/arpa2/gnutls-kdh; + license = licenses.lgpl21Plus; + maintainers = with maintainers; [ leenaars ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/gpgme/default.nix b/pkgs/development/libraries/gpgme/default.nix index 307fde4e5c277..2ab0977004c4c 100644 --- a/pkgs/development/libraries/gpgme/default.nix +++ b/pkgs/development/libraries/gpgme/default.nix @@ -30,6 +30,9 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = with stdenv; lib.optional (system == "i686-linux") "-D_FILE_OFFSET_BITS=64"; + AM_CXXFLAGS = + with stdenv; lib.optional (isDarwin) "-D_POSIX_C_SOURCE=200809L"; + meta = with stdenv.lib; { homepage = "http://www.gnupg.org/related_software/gpgme"; description = "Library for making GnuPG easier to use"; diff --git a/pkgs/development/libraries/gss/default.nix b/pkgs/development/libraries/gss/default.nix index a748d9582695c..0cc6a07e08394 100644 --- a/pkgs/development/libraries/gss/default.nix +++ b/pkgs/development/libraries/gss/default.nix @@ -1,9 +1,9 @@ { stdenv, fetchurl - -# Optional Dependencies -, shishi ? null +, withShishi ? !stdenv.isDarwin, shishi ? null }: +assert withShishi -> shishi != null; + stdenv.mkDerivation rec { name = "gss-1.0.3"; @@ -12,16 +12,16 @@ stdenv.mkDerivation rec { sha256 = "1syyvh3k659xf1hdv9pilnnhbbhs6vfapayp4xgdcc8mfgf9v4gz"; }; - buildInputs = [ shishi ]; + buildInputs = stdenv.lib.optional withShishi shishi; configureFlags = [ - "--${if shishi != null then "enable" else "disable"}-kereberos5" + "--${if withShishi != null then "enable" else "disable"}-kereberos5" ]; doCheck = true; # Fixup .la files - postInstall = stdenv.lib.optionalString (!stdenv.isDarwin && shishi != null) '' + postInstall = stdenv.lib.optionalString withShishi '' sed -i 's,\(-lshishi\),-L${shishi}/lib \1,' $out/lib/libgss.la ''; diff --git a/pkgs/development/libraries/java/javasvn/builder.sh b/pkgs/development/libraries/java/javasvn/builder.sh deleted file mode 100755 index 5eaed4c88425a..0000000000000 --- a/pkgs/development/libraries/java/javasvn/builder.sh +++ /dev/null @@ -1,6 +0,0 @@ -set -e -source $stdenv/setup - -$unzip/bin/unzip $src -mkdir -p $out -mv $name*/* $out diff --git a/pkgs/development/libraries/java/javasvn/default.nix b/pkgs/development/libraries/java/javasvn/default.nix deleted file mode 100644 index 2ad9a33879cab..0000000000000 --- a/pkgs/development/libraries/java/javasvn/default.nix +++ /dev/null @@ -1,17 +0,0 @@ -{stdenv, fetchurl, unzip} : - -stdenv.mkDerivation { - name = "javasvn-1.0.6"; - builder = ./builder.sh; - - src = fetchurl { - url = http://tmate.org/svn/org.tmatesoft.svn_1.0.6.standalone.zip; - sha256 = "0l2s3jqi5clzj5jz962i7gmy8ims51ma60mm5iflsl00dwbmgrqf"; - }; - - inherit unzip; - - meta = { - platforms = stdenv.lib.platforms.unix; - }; -} diff --git a/pkgs/development/libraries/libchop/default.nix b/pkgs/development/libraries/libchop/default.nix index 7ff992ccc5546..1be3a74fbff57 100644 --- a/pkgs/development/libraries/libchop/default.nix +++ b/pkgs/development/libraries/libchop/default.nix @@ -1,5 +1,7 @@ -{ fetchurl, stdenv, zlib, bzip2, libgcrypt, gdbm, gperf, tdb, gnutls, db -, libuuid, lzo, pkgconfig, guile }: +{ fetchurl, stdenv, zlib, bzip2, libgcrypt +, gdbm, gperf, tdb, gnutls, db, libuuid +, lzo, pkgconfig, guile +}: stdenv.mkDerivation rec { name = "libchop-0.5.2"; @@ -9,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0fpdyxww41ba52d98blvnf543xvirq1v9xz1i3x1gm9lzlzpmc2g"; }; - patches = [ ./gets-undeclared.patch ]; + patches = [ ./gets-undeclared.patch ./size_t.patch ]; nativeBuildInputs = [ pkgconfig gperf ]; @@ -21,13 +23,13 @@ stdenv.mkDerivation rec { guile ]; - doCheck = true; + doCheck = false; preConfigure = '' sed -re 's%@GUILE@%&/guile%' -i */Makefile.* Makefile.* ''; - meta = { + meta = with stdenv.lib; { description = "Tools & library for data backup and distributed storage"; longDescription = @@ -46,9 +48,8 @@ stdenv.mkDerivation rec { ''; homepage = http://nongnu.org/libchop/; - license = stdenv.lib.licenses.gpl3Plus; - - maintainers = with stdenv.lib.maintainers; [ viric ]; - platforms = stdenv.lib.platforms.gnu; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ viric ]; + platforms = platforms.gnu; }; } diff --git a/pkgs/development/libraries/libchop/size_t.patch b/pkgs/development/libraries/libchop/size_t.patch new file mode 100644 index 0000000000000..82b6cb995ef36 --- /dev/null +++ b/pkgs/development/libraries/libchop/size_t.patch @@ -0,0 +1,11 @@ +--- a/src/chop.c ++++ b/src/chop.c +@@ -539,7 +539,7 @@ extern const chop_class_t chop_gdbm_bloc + chop_qdbm_block_iterator_class; + + const struct chop_class_entry * +-chop_lookup_class_entry (const char *str, unsigned int len); ++chop_lookup_class_entry (const char *str, size_t len); + + /* Include the gperf-generated perfect hash table. */ + #include "class-lookup.c" diff --git a/pkgs/development/libraries/libuv/default.nix b/pkgs/development/libraries/libuv/default.nix index fe4ed6e410ecd..0b3b86e66a24a 100644 --- a/pkgs/development/libraries/libuv/default.nix +++ b/pkgs/development/libraries/libuv/default.nix @@ -18,8 +18,8 @@ stdenv.mkDerivation rec { "spawn_setuid_fails" "spawn_setgid_fails" "fs_chown" # user namespaces "getaddrinfo_fail" "getaddrinfo_fail_sync" ] - # sometimes: timeout (no output) - ++ stdenv.lib.optional stdenv.isDarwin "process_title"; + # sometimes: timeout (no output), failed uv_listen + ++ stdenv.lib.optionals stdenv.isDarwin [ "process_title" "emfile" ]; tdRegexp = lib.concatStringsSep "\\|" toDisable; in lib.optionalString doCheck '' sed '/${tdRegexp}/d' -i test/test-list.h diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index 7bedc189f0303..1987bbd323ee1 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, fetchpatch +{ stdenv, fetchurl, fetchpatch, lib , pkgconfig, intltool, autoreconfHook, substituteAll , file, expat, libdrm, xorg, wayland, openssl , llvmPackages, libffi, libomxil-bellagio, libva @@ -6,9 +6,11 @@ , grsecEnabled ? false , enableRadv ? false , enableTextureFloats ? false # Texture floats are patented, see docs/patents.txt +, galliumDrivers ? null +, driDrivers ? null +, vulkanDrivers ? null }: - /** Packaging design: - The basic mesa ($out) contains headers and libraries (GLU is in mesa_glu now). This or the mesa attribute (which also contains GLU) are small (~ 2 MB, mostly headers) @@ -27,6 +29,40 @@ if ! lists.elem stdenv.system platforms.mesaPlatforms then else let + defaultGalliumDrivers = + if (stdenv.isArm || stdenv.isAarch64) + then ["nouveau" "freedreno" "vc4" "etnaviv"] + else ["i915" "ilo" "r300" "r600" "radeonsi" "nouveau"]; + defaultDriDrivers = + if (stdenv.isArm || stdenv.isAarch64) + then ["nouveau"] + else ["i915" "i965" "nouveau" "radeon" "r200"]; + defaultVulkanDrivers = + if (stdenv.isArm || stdenv.isAarch64) + then [] + else ["intel"] ++ lib.optional enableRadv "radeon"; +in + +let gallium_ = galliumDrivers; dri_ = driDrivers; vulkan_ = vulkanDrivers; in + +let + galliumDrivers = + ["svga"] + ++ (if gallium_ == null + then defaultGalliumDrivers + else gallium_) + ++ ["swrast"]; + driDrivers = + (if dri_ == null + then defaultDriDrivers + else dri_) ++ ["swrast"]; + vulkanDrivers = + if vulkan_ == null + then defaultVulkanDrivers + else vulkan_; +in + +let version = "17.0.1"; branch = head (splitString "." version); driverLink = "/run/opengl-driver" + optionalString stdenv.isi686 "-32"; @@ -64,14 +100,17 @@ stdenv.mkDerivation { "--with-dri-driverdir=$(drivers)/lib/dri" "--with-dri-searchpath=${driverLink}/lib/dri" "--with-egl-platforms=x11,wayland,drm" - ] ++ (if stdenv.isArm || stdenv.isAarch64 then [ - "--with-gallium-drivers=nouveau,freedreno,vc4,etnaviv,swrast" - "--with-dri-drivers=nouveau,swrast" - ] else [ - "--with-gallium-drivers=svga,i915,ilo,r300,r600,radeonsi,nouveau,swrast" - "--with-dri-drivers=i915,i965,nouveau,radeon,r200,swrast" - ("--with-vulkan-drivers=intel" + optionalString enableRadv ",radeon") - ]) ++ [ + ] + ++ (optional (galliumDrivers != []) + ("--with-gallium-drivers=" + + builtins.concatStringsSep "," galliumDrivers)) + ++ (optional (driDrivers != []) + ("--with-dri-drivers=" + + builtins.concatStringsSep "," driDrivers)) + ++ (optional (vulkanDrivers != []) + ("--with-vulkan-drivers=" + + builtins.concatStringsSep "," vulkanDrivers)) + ++ [ (enableFeature enableTextureFloats "texture-float") (enableFeature grsecEnabled "glx-rts") (enableFeature stdenv.isLinux "dri3") @@ -144,7 +183,7 @@ stdenv.mkDerivation { # set the default search path for DRI drivers; used e.g. by X server substituteInPlace "$dev/lib/pkgconfig/dri.pc" --replace '$(drivers)' "${driverLink}" - '' + optionalString (!(stdenv.isArm || stdenv.isAarch64)) '' + '' + optionalString (builtins.elem "intel" vulkanDrivers) '' # move share/vulkan/icd.d/ mv $out/share/ $drivers/ # Update search path used by Vulkan (it's pointing to $out but diff --git a/pkgs/development/libraries/nlopt/default.nix b/pkgs/development/libraries/nlopt/default.nix index 4e3db9b0d4017..7561f3b322b5f 100644 --- a/pkgs/development/libraries/nlopt/default.nix +++ b/pkgs/development/libraries/nlopt/default.nix @@ -16,16 +16,12 @@ stdenv.mkDerivation rec { "M_INSTALL_DIR=$(out)/${octave.sitePath}/m " + "OCT_INSTALL_DIR=$(out)/${octave.sitePath}/oct "); - preConfigure = '' - find octave -name '*.cc' | xargs sed -i 's|Octave_map|octave_map|g' - ''; - meta = { homepage = "http://ab-initio.mit.edu/nlopt/"; description = "Free open-source library for nonlinear optimization"; license = stdenv.lib.licenses.lgpl21Plus; hydraPlatforms = stdenv.lib.platforms.linux; - broken = true; # cannot cope with Octave 4.x + broken = (octave != null); # cannot cope with Octave 4.x }; } diff --git a/pkgs/development/libraries/phonon/backends/gstreamer.nix b/pkgs/development/libraries/phonon/backends/gstreamer.nix index 56d40f8183384..d8358757094df 100644 --- a/pkgs/development/libraries/phonon/backends/gstreamer.nix +++ b/pkgs/development/libraries/phonon/backends/gstreamer.nix @@ -38,6 +38,10 @@ stdenv.mkDerivation rec { "-I${gst_all_1.gstreamer.dev}/lib/gstreamer-1.0/include" ]; + # cleanup: the build system creates (empty) $out/$out/share/icons (double prefix) + # if DESTDIR is unset + DESTDIR="/"; + nativeBuildInputs = [ cmake pkgconfig ] ++ optional withQt5 extra-cmake-modules; cmakeFlags = diff --git a/pkgs/development/libraries/sqlite/sqlite3_analyzer.nix b/pkgs/development/libraries/sqlite/sqlite3_analyzer.nix index d3e1a6dc17e77..d450cd21aecda 100644 --- a/pkgs/development/libraries/sqlite/sqlite3_analyzer.nix +++ b/pkgs/development/libraries/sqlite/sqlite3_analyzer.nix @@ -1,35 +1,27 @@ { lib, stdenv, fetchurl, unzip, tcl }: stdenv.mkDerivation { - name = "sqlite3_analyzer-3.8.10.1"; + name = "sqlite3_analyzer-3.17.0"; src = fetchurl { - url = "https://www.sqlite.org/2015/sqlite-src-3081001.zip"; - sha1 = "6z7w8y69jxr0xwxbhs8z3zf56zfs5x7z"; + url = "https://www.sqlite.org/2017/sqlite-src-3170000.zip"; + sha256 = "1hs8nzk2pjr4fhhrwcyqwpa24gd4ndp6f0japykg5wfadgp4nxc6"; }; - buildInputs = [ unzip tcl ]; + nativeBuildInputs = [ unzip ]; + buildInputs = [ tcl ]; - # A bug in the latest release of sqlite3 prevents bulding sqlite3_analyzer. - # Hopefully this work-around can be removed for future releases. - postConfigure = '' - substituteInPlace Makefile \ - --replace '"#define SQLITE_ENABLE_DBSTAT_VTAB"' '"#define SQLITE_ENABLE_DBSTAT_VTAB 1"' - ''; - - buildPhase = '' - make sqlite3_analyzer - ''; + makeFlags = [ "sqlite3_analyzer" ]; installPhase = '' - mkdir -p "$out/bin" - mv sqlite3_analyzer "$out/bin" + install -Dm755 sqlite3_analyzer \ + "$out/bin/sqlite3_analyzer" ''; - meta = { + meta = with stdenv.lib; { homepage = http://www.sqlite.org/; description = "A tool that shows statistics about sqlite databases"; - platforms = stdenv.lib.platforms.unix; - maintainers = with stdenv.lib.maintainers; [ pesterhazy ]; + platforms = platforms.unix; + maintainers = with maintainers; [ pesterhazy ]; }; } diff --git a/pkgs/development/libraries/unittest-cpp/default.nix b/pkgs/development/libraries/unittest-cpp/default.nix index bc9035d479b58..cee71df4849a8 100644 --- a/pkgs/development/libraries/unittest-cpp/default.nix +++ b/pkgs/development/libraries/unittest-cpp/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { homepage = "https://github.com/unittest-cpp/unittest-cpp"; description = "Lightweight unit testing framework for C++"; license = licenses.mit; - maintainers = [maintainers.tohl]; + maintainers = []; platforms = stdenv.lib.platforms.unix; }; } diff --git a/pkgs/development/libraries/uriparser/default.nix b/pkgs/development/libraries/uriparser/default.nix index 9089889f4dd21..6b5c48a6105da 100644 --- a/pkgs/development/libraries/uriparser/default.nix +++ b/pkgs/development/libraries/uriparser/default.nix @@ -1,19 +1,35 @@ { stdenv, fetchurl, cpptest, pkgconfig, doxygen, graphviz }: stdenv.mkDerivation rec { - name = "uriparser-0.8.2"; + name = "uriparser-${version}"; + version = "0.8.4"; src = fetchurl { - url = "mirror://sourceforge/project/uriparser/Sources/0.8.2/${name}.tar.bz2"; - sha256 = "13sh7slys3y5gfscc40g2r3hkjjywjvxlcqr77ifjrazc6q6cvkd"; + url = "mirror://sourceforge/project/uriparser/Sources/${version}/${name}.tar.bz2"; + sha256 = "08vvcmg4mcpi2gyrq043c9mfcy3mbrw6lhp86698hx392fjcsz6f"; }; - buildInputs = [ cpptest pkgconfig doxygen graphviz ]; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ cpptest doxygen graphviz ]; + + # There is actually no .map files to install in doc for v0.8.4 + # (dot outputs only SVG and PNG in this release) + preBuild = '' + substituteInPlace doc/Makefile.am --replace " html/*.map" "" + substituteInPlace doc/Makefile.in --replace " html/*.map" "" + ''; + meta = with stdenv.lib; { homepage = http://uriparser.sourceforge.net/; description = "Strictly RFC 3986 compliant URI parsing library"; + longDescription = '' + uriparser is a strictly RFC 3986 compliant URI parsing and handling library written in C. + API documentation is available on uriparser website. + ''; + license = licenses.bsd3; + platforms = platforms.linux; maintainers = with maintainers; [ bosu ]; - license = stdenv.lib.licenses.bsd3; }; } diff --git a/pkgs/development/libraries/ustr/default.nix b/pkgs/development/libraries/ustr/default.nix index b0a4cc07bc63d..c15259c585adc 100644 --- a/pkgs/development/libraries/ustr/default.nix +++ b/pkgs/development/libraries/ustr/default.nix @@ -21,8 +21,6 @@ stdenv.mkDerivation rec { sed -i 's,\(USTR_CONF_HAVE_STDINT_H\) 0,\1 1,g' ustr-import.in ''; - buildTargets = [ "all-shared" ]; - preBuild = '' makeFlagsArray+=("prefix=$out") makeFlagsArray+=("LDCONFIG=echo") diff --git a/pkgs/development/libraries/wxSVG/default.nix b/pkgs/development/libraries/wxSVG/default.nix new file mode 100644 index 0000000000000..b991590924db3 --- /dev/null +++ b/pkgs/development/libraries/wxSVG/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchurl +, pkgconfig, wxGTK +, ffmpeg, libexif +, cairo, pango }: + +stdenv.mkDerivation rec { + + name = "wxSVG-${version}"; + srcName = "wxsvg-${version}"; + version = "1.5.11"; + + src = fetchurl { + url = "mirror://sourceforge/project/wxsvg/wxsvg/${version}/${srcName}.tar.bz2"; + sha256 = "0m3ff8mjiq4hvy8rmxyc9fkpf24xwxhvr3a6jmvr2q5zc41xhz7x"; + }; + + nativeBuildInputs = [ pkgconfig ]; + + propagatedBuildInputs = [ wxGTK ffmpeg libexif ]; + + buildInputs = [ cairo pango ]; + + meta = with stdenv.lib; { + description = "A SVG manipulation library built with wxWidgets"; + longDescription = '' + wxSVG is C++ library to create, manipulate and render + Scalable Vector Graphics (SVG) files with the wxWidgets toolkit. + ''; + homepage = http://wxsvg.sourceforge.net/; + license = with licenses; gpl2; + maintainers = with maintainers; [ AndersonTorres ]; + platforms = with platforms; linux; + }; +} diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix index 36b55c59c2455..e461ce858cfd4 100644 --- a/pkgs/development/libraries/xapian/default.nix +++ b/pkgs/development/libraries/xapian/default.nix @@ -1,23 +1,28 @@ { stdenv, fetchurl, libuuid, zlib }: -stdenv.mkDerivation rec { - name = "xapian-${version}"; - version = "1.4.0"; +let + generic = version: sha256: stdenv.mkDerivation rec { + name = "xapian-${version}"; - src = fetchurl { - url = "http://oligarchy.co.uk/xapian/${version}/xapian-core-${version}.tar.xz"; - sha256 = "0xv4da5rmqqzkkkzx2v3jwh5hz5zxhd2b7m8x30fk99a25blyn0h"; - }; + src = fetchurl { + url = "http://oligarchy.co.uk/xapian/${version}/xapian-core-${version}.tar.xz"; + inherit sha256; + }; - outputs = [ "out" "doc" ]; + outputs = [ "out" "doc" ]; - buildInputs = [ libuuid zlib ]; + buildInputs = [ libuuid zlib ]; - meta = { - description = "Search engine library"; - homepage = http://xapian.org/; - license = stdenv.lib.licenses.gpl2Plus; - maintainers = [ stdenv.lib.maintainers.chaoflow ]; - platforms = stdenv.lib.platforms.unix; + meta = { + description = "Search engine library"; + homepage = http://xapian.org/; + license = stdenv.lib.licenses.gpl2Plus; + maintainers = [ stdenv.lib.maintainers.chaoflow ]; + platforms = stdenv.lib.platforms.unix; + }; }; +in { + # used by xapian-ruby + xapian_1_2_22 = generic "1.2.22" "0zsji22n0s7cdnbgj0kpil05a6bgm5cfv0mvx12d8ydg7z58g6r6"; + xapian_1_4_0 = generic "1.4.0" "0xv4da5rmqqzkkkzx2v3jwh5hz5zxhd2b7m8x30fk99a25blyn0h"; } diff --git a/pkgs/development/libraries/zimlib/default.nix b/pkgs/development/libraries/zimlib/default.nix index 77a7989baab4e..9b7a90266284a 100644 --- a/pkgs/development/libraries/zimlib/default.nix +++ b/pkgs/development/libraries/zimlib/default.nix @@ -1,22 +1,23 @@ -{ stdenv, fetchgit, automake, autoconf, libtool, lzma }: +{ stdenv, fetchurl, lzma }: -stdenv.mkDerivation { - name = "zimlib"; - version = "20150710"; - src = fetchgit { - url = https://gerrit.wikimedia.org/r/p/openzim.git; - rev = "165eab3e154c60b5b6436d653dc7c90f56cf7456"; - sha256 = "076ixsq4lis0rkk7p049g02bidc7bggl9kf2wzmgmsnx396mqymf"; +stdenv.mkDerivation rec { + name = "zimlib-${version}"; + version = "1.4"; + + src = fetchurl { + url = "http://www.openzim.org/download/${name}.tar.gz"; + sha256 = "14ra3iq42x53k1nqxb5lsg4gadlkpkgv6cbjjl6305ajmbrghcdq"; }; - buildInputs = [ automake autoconf libtool lzma ]; - setSourceRoot = "cd openzim-*/zimlib; export sourceRoot=`pwd`"; - preConfigure = "./autogen.sh"; - meta = { - description = "Library for reading and writing ZIM files (file format for storing Web content offline)"; + buildInputs = [ lzma ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Library for reading and writing ZIM files"; homepage = http://www.openzim.org/wiki/Zimlib; - license = stdenv.lib.licenses.gpl2; - maintainers = with stdenv.lib.maintainers; [ robbinch ]; - platforms = with stdenv.lib.platforms; linux; + license = licenses.gpl2; + maintainers = with maintainers; [ robbinch ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/ocaml-modules/angstrom/default.nix b/pkgs/development/ocaml-modules/angstrom/default.nix index 56509ab5786a6..755724bc8b826 100644 --- a/pkgs/development/ocaml-modules/angstrom/default.nix +++ b/pkgs/development/ocaml-modules/angstrom/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, ocaml, cstruct, result, findlib, ocaml_oasis }: +{ stdenv, fetchFromGitHub, ocaml, ocamlbuild, cstruct, result, findlib, ocaml_oasis }: stdenv.mkDerivation rec { version = "0.3.0"; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { createFindlibDestdir = true; - buildInputs = [ ocaml ocaml_oasis findlib ]; + buildInputs = [ ocaml ocaml_oasis findlib ocamlbuild ]; propagatedBuildInputs = [ result cstruct ]; meta = { diff --git a/pkgs/development/ocaml-modules/core_extended/default.nix b/pkgs/development/ocaml-modules/core_extended/default.nix index fef4fd81158fd..fe4fc5d87ab71 100644 --- a/pkgs/development/ocaml-modules/core_extended/default.nix +++ b/pkgs/development/ocaml-modules/core_extended/default.nix @@ -12,6 +12,13 @@ buildOcaml rec { sha256 = "f87b0661b6c2cfb545ec61d1cb2ab1b9c4967b6ac14e651de41d3a6fb7f0f1e3"; }; + preConfigure = stdenv.lib.optionalString stdenv.isLinux '' + patch lib/extended_unix_stubs.c <<EOF + 0a1 + > #define _LINUX_QUOTA_VERSION 2 + EOF + ''; + hasSharedObjects = true; buildInputs = [ pa_bench pa_test pa_ounit ]; propagatedBuildInputs = [bin_prot_p4 comparelib core_p4 custom_printf fieldslib_p4 diff --git a/pkgs/development/ocaml-modules/cstruct/default.nix b/pkgs/development/ocaml-modules/cstruct/default.nix index 8c1aac4d83b2a..eb148311be0b8 100644 --- a/pkgs/development/ocaml-modules/cstruct/default.nix +++ b/pkgs/development/ocaml-modules/cstruct/default.nix @@ -1,4 +1,4 @@ -{ stdenv, writeText, fetchFromGitHub, ocaml, ocplib-endian, sexplib, findlib, ppx_tools +{ stdenv, writeText, fetchFromGitHub, ocaml, ocamlbuild, ocplib-endian, sexplib, findlib, ppx_tools , async ? null, lwt ? null }: @@ -24,7 +24,7 @@ stdenv.mkDerivation { configureFlags = [ "${opt lwt}-lwt" "${opt async}-async" "${opt ppx_tools}-ppx" ]; - buildInputs = [ ocaml findlib ppx_tools lwt async ]; + buildInputs = [ ocaml findlib ocamlbuild ppx_tools lwt async ]; propagatedBuildInputs = [ ocplib-endian sexplib ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/ezjsonm/default.nix b/pkgs/development/ocaml-modules/ezjsonm/default.nix index 44d8ce393fbd2..aec6851e12bc4 100644 --- a/pkgs/development/ocaml-modules/ezjsonm/default.nix +++ b/pkgs/development/ocaml-modules/ezjsonm/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, jsonm, hex, sexplib, lwt }: +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, jsonm, hex, sexplib, lwt }: let version = "0.4.3"; in @@ -10,7 +10,7 @@ stdenv.mkDerivation { sha256 = "1y6p3ga6vj1wx5dyns7hjgd0qgrrn2hnn323a7y5didgci5pybls"; }; - buildInputs = [ ocaml findlib lwt ]; + buildInputs = [ ocaml findlib ocamlbuild lwt ]; propagatedBuildInputs = [ jsonm hex sexplib ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/hex/default.nix b/pkgs/development/ocaml-modules/hex/default.nix index 07b7773ff2c72..56d5e07f1d190 100644 --- a/pkgs/development/ocaml-modules/hex/default.nix +++ b/pkgs/development/ocaml-modules/hex/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, cstruct }: +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, cstruct }: let version = "1.0.0"; in @@ -10,7 +10,7 @@ stdenv.mkDerivation { sha256 = "0g4cq4bsksga15fa5ln083gkglawknbnhi2s4k8yk0yi5xngvwm4"; }; - buildInputs = [ ocaml findlib ]; + buildInputs = [ ocaml findlib ocamlbuild ]; propagatedBuildInputs = [ cstruct ]; configureFlags = "--enable-tests"; doCheck = true; diff --git a/pkgs/development/ocaml-modules/io-page/default.nix b/pkgs/development/ocaml-modules/io-page/default.nix index 8580bb6471343..ed058d82a0ed9 100644 --- a/pkgs/development/ocaml-modules/io-page/default.nix +++ b/pkgs/development/ocaml-modules/io-page/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, cstruct }: +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, cstruct }: let version = "1.5.1"; in @@ -10,7 +10,7 @@ stdenv.mkDerivation { sha256 = "0y92wbvi129d0i7wr4lpk1ps9l247zaf1ibqqz0i6spgl28dyq79"; }; - buildInputs = [ ocaml findlib ]; + buildInputs = [ ocaml findlib ocamlbuild ]; propagatedBuildInputs = [ cstruct ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/janestreet/async_kernel-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/async_kernel-113_33_00.nix new file mode 100644 index 0000000000000..2110b1d6b5049 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/async_kernel-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, core_kernel, ppx_jane +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-async_kernel-113.33.00"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/async_kernel-113.33.00.tar.gz; + sha256 = "1kkkqpdd3mq9jh3b3l1yk37841973lh6g3pfv8fcjzif4n7myf15"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_jane ]; + propagatedBuildInputs = [ core_kernel ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/janestreet/async_unix-113_33_00.nix b/pkgs/development/ocaml-modules/janestreet/async_unix-113_33_00.nix new file mode 100644 index 0000000000000..595e1198de5f8 --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/async_unix-113_33_00.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam, topkg +, async_kernel, core, ppx_jane +}: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-async_unix-113.33.00+4.03"; + src = fetchurl { + url = http://ocaml.janestreet.com/ocaml-core/113.33/files/async_unix-113.33.00+4.03.tar.gz; + sha256 = "12b0ffq9yhv3f49kk2k7z7hrn2j4xlka7knm99hczl6gmjni7nqv"; + }; + + buildInputs = [ ocaml findlib ocamlbuild opam ppx_jane ]; + propagatedBuildInputs = [ async_kernel core ]; + + inherit (topkg) installPhase; + + meta = { + license = stdenv.lib.licenses.asl20; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/ocamlgraph/default.nix b/pkgs/development/ocaml-modules/ocamlgraph/default.nix index 579571ef62530..4f7c791420195 100644 --- a/pkgs/development/ocaml-modules/ocamlgraph/default.nix +++ b/pkgs/development/ocaml-modules/ocamlgraph/default.nix @@ -11,14 +11,12 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlPackages.lablgtk ocamlPackages.camlp4 ]; - patches = ./destdir.patch; - # some patching is required so that the lablgtk2 library is taken into account. It # does not reside in a subdirectory of the default library path, hence: # * configure looked in the wrong path # * ocaml needs that directory and the stubs directory as -I flag postPatch = '' - sed -i 's@$(DESTDIR)$(OCAMLLIB)/ocamlgraph@$(DESTDIR)/lib/ocaml/${ocaml.version}/site-lib/ocamlgraph@' Makefile.in + sed -i 's@$(DESTDIR)$(OCAMLLIB)/ocamlgraph@$(prefix)/lib/ocaml/${ocaml.version}/site-lib/ocamlgraph@' Makefile.in sed -i 's@$OCAMLLIB/lablgtk2@${ocamlPackages.lablgtk}/lib/ocaml/${ocaml.version}/site-lib/lablgtk2@' configure Makefile.in sed -i 's@+lablgtk2@${ocamlPackages.lablgtk}/lib/ocaml/${ocaml.version}/site-lib/lablgtk2 -I ${ocamlPackages.lablgtk}/lib/ocaml/${ocaml.version}/site-lib/stublibs@' configure Makefile.in editor/Makefile ''; diff --git a/pkgs/development/ocaml-modules/ppx_deriving/default.nix b/pkgs/development/ocaml-modules/ppx_deriving/default.nix index 4b4056a69d721..a1255b2dbc178 100644 --- a/pkgs/development/ocaml-modules/ppx_deriving/default.nix +++ b/pkgs/development/ocaml-modules/ppx_deriving/default.nix @@ -1,15 +1,16 @@ -{stdenv, buildOcaml, fetchurl, - cppo, ppx_tools, result, ounit}: +{ stdenv, buildOcaml, fetchzip +, cppo, ppx_tools, result, ounit +}: buildOcaml rec { name = "ppx_deriving"; - version = "v3.3"; + version = "4.1"; minimumSupportedOcamlVersion = "4.02"; - src = fetchurl { - url = "https://github.com/whitequark/${name}/archive/${version}.tar.gz"; - sha256 = "1j20c6r2v7h05a4v9m8z5m1yqgwif41yrp63mik14pf3dkrj8x3f"; + src = fetchzip { + url = "https://github.com/whitequark/${name}/archive/v${version}.tar.gz"; + sha256 = "0cy9p8d8cbcxvqyyv8fz2z9ypi121zrgaamdlp4ld9f3jnwz7my9"; }; hasSharedObjects = true; diff --git a/pkgs/development/python-modules/astroid/default.nix b/pkgs/development/python-modules/astroid/default.nix new file mode 100644 index 0000000000000..76f58e695f28c --- /dev/null +++ b/pkgs/development/python-modules/astroid/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchurl, buildPythonPackage, python, logilab_common, six, + lazy-object-proxy, wrapt }: + + buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "astroid"; + version = "1.4.9"; + + src = fetchurl { + url = "mirror://pypi/a/${pname}/${name}.tar.gz"; + sha256 = "1mw5q20b80j55vbpcdfl824sbb1q15dhkfbczjnnv8733j4yg0x4"; + }; + + propagatedBuildInputs = [ logilab_common six lazy-object-proxy wrapt ]; + + postPatch = '' + cd astroid/tests + for i in $(ls unittest*); do mv -v $i test_$i; done + cd ../.. + rm -vf astroid/tests/test_unittest_inference.py + ''; + + checkPhase = '' + ${python.interpreter} -m unittest discover + ''; + + meta = with stdenv.lib; { + description = "A abstract syntax tree for Python with inference support"; + homepage = http://bitbucket.org/logilab/astroid; + license = licenses.lgpl2; + platform = platforms.all; + maintainers = with maintainers; [ nand0p ]; + }; + } diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index a923e553582c1..21a7755c4097c 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -82,10 +82,13 @@ in buildPythonPackage rec { ''; meta = { + # https://github.com/pandas-dev/pandas/issues/14866 + # pandas devs are no longer testing i686 so safer to assume it's broken + broken = stdenv.isi686; homepage = "http://pandas.pydata.org/"; description = "Python Data Analysis Library"; license = stdenv.lib.licenses.bsd3; maintainers = with stdenv.lib.maintainers; [ raskin fridh ]; platforms = stdenv.lib.platforms.unix; }; -} \ No newline at end of file +} diff --git a/pkgs/development/python-modules/pylint/default.nix b/pkgs/development/python-modules/pylint/default.nix new file mode 100644 index 0000000000000..844d2e2295474 --- /dev/null +++ b/pkgs/development/python-modules/pylint/default.nix @@ -0,0 +1,42 @@ +{ stdenv, fetchurl, buildPythonPackage, python, astroid, isort, + pytest, mccabe, configparser, backports_functools_lru_cache }: + + buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pylint"; + version = "1.6.5"; + + src = fetchurl { + url = "mirror://pypi/p/${pname}/${name}.tar.gz"; + sha256 = "06b78nl996949a7h01c4ycy8779hl5cm7vpxij5lm3npim59hwx6"; + }; + + buildInputs = [ pytest mccabe configparser backports_functools_lru_cache ]; + + propagatedBuildInputs = [ astroid isort ]; + + postPatch = '' + # Remove broken darwin tests + sed -i -e '/test_parallel_execution/,+2d' pylint/test/test_self.py + sed -i -e '/test_py3k_jobs_option/,+4d' pylint/test/test_self.py + rm -vf pylint/test/test_functional.py + ''; + + checkPhase = '' + cd pylint/test + ${python.interpreter} -m unittest discover -p "*test*" + ''; + + postInstall = '' + mkdir -p $out/share/emacs/site-lisp + cp "elisp/"*.el $out/share/emacs/site-lisp/ + ''; + + meta = with stdenv.lib; { + homepage = http://www.logilab.org/project/pylint; + description = "A bug and style checker for Python"; + platform = platforms.all; + license = licenses.gpl1Plus; + maintainers = with maintainers; [ nand0p ]; + }; + } diff --git a/pkgs/development/python-modules/tensorflow/default.nix b/pkgs/development/python-modules/tensorflow/default.nix index 9357ea90b4056..04e820307a48a 100644 --- a/pkgs/development/python-modules/tensorflow/default.nix +++ b/pkgs/development/python-modules/tensorflow/default.nix @@ -3,8 +3,8 @@ , buildPythonPackage , isPy35, isPy27 , cudaSupport ? false -, cudatoolkit75 ? null -, cudnn5_cudatoolkit75 ? null +, cudatoolkit ? null +, cudnn ? null , gcc49 ? null , linuxPackages ? null , numpy @@ -16,8 +16,8 @@ , zlib }: -assert cudaSupport -> cudatoolkit75 != null - && cudnn5_cudatoolkit75 != null +assert cudaSupport -> cudatoolkit != null + && cudnn != null && gcc49 != null && linuxPackages != null; @@ -97,7 +97,7 @@ buildPythonPackage rec { propagatedBuildInputs = with stdenv.lib; [ numpy six protobuf3_2 swig mock ] - ++ optionals cudaSupport [ cudatoolkit75 cudnn5_cudatoolkit75 gcc49 ]; + ++ optionals cudaSupport [ cudatoolkit cudnn gcc49 ]; # Note that we need to run *after* the fixup phase because the # libraries are loaded at runtime. If we run in preFixup then @@ -105,7 +105,7 @@ buildPythonPackage rec { postFixup = let rpath = stdenv.lib.makeLibraryPath (if cudaSupport then - [ gcc49.cc.lib zlib cudatoolkit75 cudnn5_cudatoolkit75 + [ gcc49.cc.lib zlib cudatoolkit cudnn linuxPackages.nvidia_x11 ] else [ gcc.cc.lib zlib ] diff --git a/pkgs/development/python-modules/typed-ast/default.nix b/pkgs/development/python-modules/typed-ast/default.nix new file mode 100644 index 0000000000000..8d36d3c3a61f4 --- /dev/null +++ b/pkgs/development/python-modules/typed-ast/default.nix @@ -0,0 +1,16 @@ +{ buildPythonPackage, fetchzip, isPy3k, lib, pythonOlder }: +buildPythonPackage rec { + name = "typed-ast-${version}"; + version = "1.0.1"; + src = fetchzip { + url = "mirror://pypi/t/typed-ast/${name}.zip"; + sha256 = "1q69czr9ghnbd81hay71kgynn6mqi5nsgand9yw6dyw5bim5l154"; + }; + # Only works with Python 3.3 and newer; + disabled = !isPy3k && !(pythonOlder "3.3"); + meta = { + homepage = "https://pypi.python.org/pypi/typed-ast"; + description = "a fork of Python 2 and 3 ast modules with type comment support"; + license = lib.licenses.asl20; + }; +} diff --git a/pkgs/development/r-modules/README.md b/pkgs/development/r-modules/README.md index 0d9c1490d2b98..5aa839b3b5a85 100644 --- a/pkgs/development/r-modules/README.md +++ b/pkgs/development/r-modules/README.md @@ -94,9 +94,6 @@ mv cran-packages.nix.new cran-packages.nix Rscript generate-r-packages.R bioc > bioc-packages.nix.new mv bioc-packages.nix.new bioc-packages.nix - -Rscript generate-r-packages.R irkernel > irkernel-packages.nix.new -mv irkernel-packages.nix.new irkernel-packages.nix ``` `generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefor the renaming. diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index b2cb8857db770..a19aa0f51a2d6 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2017-02-23"; }; +let derive2 = derive { snapshot = "2017-03-03"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; @@ -76,6 +76,7 @@ in with self; { AUtests = derive2 { name="AUtests"; version="0.98"; sha256="0m2nl55qfwfzlf92f43b9q75xqvrlx7qzcz6qlnjbjcr80s0qj9q"; depends=[logistf]; }; AWR = derive2 { name="AWR"; version="1.11.89"; sha256="0mg48720ny2a28yfwqx5p4r7g7rbjbzzgbkd2m31hfyz4vnrsr4v"; depends=[rJava]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; + AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; AbSim = derive2 { name="AbSim"; version="0.1"; sha256="0z3ghz0wmf2z4s2mnadiacir5frzlw77gca8fkvdh8rv5pwyy38c"; depends=[ape poweRlaw]; }; AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5"; sha256="0071llj6xqsj495nlnvhzsqbrvls7fs3xscng537332xinmfhwdr"; depends=[DESeq limma Rcpp RcppArmadillo]; }; AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; }; @@ -112,6 +113,7 @@ in with self; { AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="0.2.1"; sha256="100mbmdllk6c32j75jviz2k9kmwca3jvrqb95a555alfcpkfim8c"; depends=[]; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; + AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.0"; sha256="14cdkbwv6bf0h6na200gwq6gdldzawsvzk9pnpixj1kq2n8amm6b"; depends=[ape seqinr]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; AnthropMMD = derive2 { name="AnthropMMD"; version="1.0.1"; sha256="1zb5qxmnbp2ha7hsnb4cvlc6n83gimwsq2g5pwkg7yqi5xgcp1ff"; depends=[tcltk2]; }; @@ -184,7 +186,7 @@ in with self; { BH = derive2 { name="BH"; version="1.62.0-1"; sha256="01vfdpfznd4ynqql33z238xr262mvy3i80lyi8l3a3p3hi0a262p"; depends=[]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BIEN = derive2 { name="BIEN"; version="1.0.0"; sha256="1yzn7inxc471pnk8b1c6q3s07r8j400dhmplnk7nbbgfbagqi987"; depends=[ape DBI maptools rgdal rgeos RPostgreSQL sp]; }; - BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="1.12-0"; sha256="13bdv9wh5s5jz5hkl839hd9x13958r3p3zzkz6j0nd7z5xax47x6"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; }; + BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="1.13-24"; sha256="03p4k067s5wl7i9qy1iym9ndq4977a42nbbcac40akvibqpzhgdy"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="1.5.5"; sha256="1blqaxhx9ffa036zcz30kmkhh58l0ybmyrb2sb947f2i13h7qsk0"; depends=[haplo_stats XML]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="1.1"; sha256="1qawp10hw7xhqyg9bdwvgxbksiwhga7h6vwp8m7q30ibwfv5kamg"; depends=[httr jsonlite minpack_lm msm raster]; }; @@ -201,7 +203,8 @@ in with self; { BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="0.2.0"; sha256="1w8p8fkiai2xqgf0w8imv55p8s1nvsfdfmyrq2cnc5b8m1gw457k"; depends=[MASS matrixcalc mvtnorm plyr truncnorm]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; - BNPdensity = derive2 { name="BNPdensity"; version="2015.5"; sha256="0jgdc9dayc57y77bb2yjcn1pb5ahrvbrsmyjkhyl4365sn5njzl8"; depends=[]; }; + BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; }; + BNSP = derive2 { name="BNSP"; version="1.1.1"; sha256="00rmfn0ivrjghwzpfig3znwpswj0l1jvs9kvkknb1z33kvwbc9b4"; depends=[]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive2 { name="BOIN"; version="2.4"; sha256="0vb3bkaq9vl1yqm3dhdpd27nhv2095n3lp90fr961jpwj1xhjh5l"; depends=[Iso]; }; BPEC = derive2 { name="BPEC"; version="1.0"; sha256="15ys0nzy6988yw1lf4lmv2h9i164cbl41x261gdyvmg0dy62qsnc"; depends=[ape coda fields igraph maps maptools mvtnorm phytools R2G2 sp]; }; @@ -258,7 +261,7 @@ in with self; { BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; - BayesS5 = derive2 { name="BayesS5"; version="1.22"; sha256="18bs9kgpk7qg1hqdk7av0ygmrkn19nmrdprxf5syy0iqj5l3y13q"; depends=[abind Matrix snowfall]; }; + BayesS5 = derive2 { name="BayesS5"; version="1.30"; sha256="1nx61sq1d20238hbgr9p9hrmnxsxpsjhnb4sdhmqg1m7klq8qyrw"; depends=[abind Matrix snowfall]; }; BayesSAE = derive2 { name="BayesSAE"; version="1.0-1"; sha256="09s7f472by689b2b0gahnkhyjriizpsx6r5qa95nf3f4bfqi2cpf"; depends=[coda Formula lattice]; }; BayesSingleSub = derive2 { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; }; BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; @@ -283,7 +286,7 @@ in with self; { Bergm = derive2 { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[coda ergm mvtnorm network]; }; Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; }; - BeviMed = derive2 { name="BeviMed"; version="3.0"; sha256="0mm1n9lmx03cmwdm3nwj7x42sa24vnahhxizykfd1npcfm9zz5ij"; depends=[Rcpp]; }; + BeviMed = derive2 { name="BeviMed"; version="4.0"; sha256="16hwjs3kv1f49la2p5qlywc02n9g7g7qzb5v4m7p2mmi0p2ybmvm"; depends=[Rcpp]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiBitR = derive2 { name="BiBitR"; version="0.2.2"; sha256="13v8kwf8rnagf978v26a5qn19x44lzdz61n80rw8vxi2ydxbdbr9"; depends=[biclust foreign]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="1.0.6"; sha256="1kgrk4xanvxqdq619ha08wwplmsn2xqygx4dziagx48iqfpp1lxj"; depends=[nlme]; }; @@ -337,6 +340,7 @@ in with self; { BrailleR = derive2 { name="BrailleR"; version="0.24.2"; sha256="07kd9x176gd3ccpskv7vn22jam1pknsywcd09qj7l4zfbv9l0rqx"; depends=[devtools extrafont gridGraphics gridSVG knitr moments nortest pander rmarkdown xtable]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-4"; sha256="1saxa492f32f511vw0ys55z3kgyzhswxkylw9k9ccl87zgbszf3a"; depends=[]; }; + Brq = derive2 { name="Brq"; version="2.0"; sha256="0j6d1m2drzy1wyr5y25qb8gs6555vh0lkyh415kw17x9dj4ks0zx"; depends=[]; }; BsMD = derive2 { name="BsMD"; version="2013.0718"; sha256="1yvazqlbmm221r7nkhrhi309gkk6vx7ji5xlvf07klya2zg20gcj"; depends=[]; }; BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; @@ -357,7 +361,7 @@ in with self; { CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; CATT = derive2 { name="CATT"; version="1.0"; sha256="1hnhzla14y0cii51pi53a42bmsxcqvylj88fyvgpfavmvz301f7d"; depends=[]; }; CATkit = derive2 { name="CATkit"; version="3.0.0.2"; sha256="1afaa1s8clynpna9hwgbgfdp5jciv0n5q9vb27cgyl9n69nla991"; depends=[magic MASS png rtf season signal]; }; - CAvariants = derive2 { name="CAvariants"; version="3.3"; sha256="14ly5pyhvsbz08p0pk1ijwivz17jrnd0qqzn4n9jqzc9b8yml4dw"; depends=[]; }; + CAvariants = derive2 { name="CAvariants"; version="3.4"; sha256="1mrqvcgnxbzah7vhqqqdygds8plwswd2l8w0aq5132byhhc4kiax"; depends=[]; }; CBPS = derive2 { name="CBPS"; version="0.13"; sha256="16g62pvxd2njawk2sfaznhicy1dfxab3v1k0bfrzj5a4l1501l2z"; depends=[MASS MatchIt nnet numDeriv]; }; CCA = derive2 { name="CCA"; version="1.2"; sha256="00zy6bln22qshhlll0y0adnvb8wa1f7famqyws71b6pcnwxki5ha"; depends=[fda fields]; }; CCAGFA = derive2 { name="CCAGFA"; version="1.0.8"; sha256="1jxb6d1h5p97wnr45s1fsspksqn771nib415ihxi4vj5w8s94j8b"; depends=[]; }; @@ -373,6 +377,7 @@ in with self; { CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVine = derive2 { name="CDVine"; version="1.4"; sha256="0cp78pb6yny4n5q2j9k6xdql588536572gbphnw8zkdmrg65qyz7"; depends=[igraph MASS mvtnorm]; }; + CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.0"; sha256="1sj6w80w5qmy5advk2y38lrq9xz1zidq9f83xc364kpn3nw2d7x2"; depends=[combinat VineCopula]; }; CEC = derive2 { name="CEC"; version="0.9.4"; sha256="194n190szwzxjxfdhiah1f50vp6n7f3q567yky7pq1x2hngna5rs"; depends=[]; }; CEGO = derive2 { name="CEGO"; version="2.1.0"; sha256="141gr1sin6sgvjasm6sczvq2za25ybw7wapdljdx2lx7qhgq77rk"; depends=[DEoptim expm MASS Matrix quadprog]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; @@ -454,7 +459,7 @@ in with self; { CellularAutomaton = derive2 { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_methodsS3 R_oo]; }; CensMixReg = derive2 { name="CensMixReg"; version="1.0"; sha256="0plqirl6vhk2rx9q2kgniq7km9jl1g6xdn74sdjpdcm4srmr7074"; depends=[mixsmsn mnormt mvtnorm]; }; CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; }; - CensSpatial = derive2 { name="CensSpatial"; version="1.2"; sha256="07zi8mxzrqfdcyrrgch9yn0dpmvj5aj2d10q26cnykifsdbaq12c"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster tmvtnorm]; }; + CensSpatial = derive2 { name="CensSpatial"; version="1.3"; sha256="0gd1c5qlk71avv0s3jqwb00h9cm6djg9qwzc1znc3kh61wx9kvfi"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster tmvtnorm]; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; }; CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.5"; sha256="1q6dcikmk5la5msb4gml0llvbb9262bsgmdhxi75myv4jlb3b8p9"; depends=[robustbase]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; @@ -520,8 +525,9 @@ in with self; { CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-4"; sha256="1a3j5j50fz3f8vkvdmfccv5hn00spk08xanadqxpdy8pn925gqqb"; depends=[]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.1.5"; sha256="0z9fjd344wc5bisir7hf64abli7in8b5860y1012vmah4vz9knlr"; depends=[Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; + CompetingRisk = derive2 { name="CompetingRisk"; version="1.0"; sha256="0lfpqz3a8csgmv8cg4clc1dzsgxvssfr5cyn1mgyxfzssch85drm"; depends=[MASS Matrix reshape2 survival wesanderson]; }; Compind = derive2 { name="Compind"; version="1.1.2"; sha256="14y18vvj13f3wi5gzrwabmj908hh1c2mizw98a36xxzlxw79fipd"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff psych]; }; - Compositional = derive2 { name="Compositional"; version="2.2"; sha256="06s101fa8iv1sdg6x5yz3fl08mjjw265ff9kj9dxds02h036b84s"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; + Compositional = derive2 { name="Compositional"; version="2.3"; sha256="1w2knd1h2827vl31zm9k2h404w9kcavigsj8idi8ndp6c0b2j6pc"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6"; sha256="1kkc4xp5b6q54b76wk4ga28wl668psbpyivl6bnh3xm21276yx5k"; depends=[Rcpp]; }; ConR = derive2 { name="ConR"; version="1.1"; sha256="1jl6pp0g7qrp0h5771r03gjiy4g7xbqw12liiqd8cfyl045s07yr"; depends=[fields geosphere maptools raster rgdal rgeos sp spatstat]; }; @@ -536,7 +542,7 @@ in with self; { ConvCalendar = derive2 { name="ConvCalendar"; version="1.2"; sha256="0yq9a42gw3pxxwvpbj6zz5a5zl7g5vkswq3mjjv5r28zwa3v05vc"; depends=[]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.1"; sha256="0878fz33jxh5cf72lv0lga48wq2hqa4wz6m59111k59pzrsli344"; depends=[lattice tkrplot]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="1.1"; sha256="0pgzrgd9bzf2qh9b7h0y4mmszlxk1wxdwlid3xh7rk7pif3mw3qd"; depends=[]; }; - CopulaDTA = derive2 { name="CopulaDTA"; version="0.0.4"; sha256="087kyq6bmnv12cg1il2hb9x1wbac5a85khf8mgvcvy4f1f8hhckr"; depends=[ggplot2 plyr reshape2 rstan]; }; + CopulaDTA = derive2 { name="CopulaDTA"; version="0.0.5"; sha256="0zc2i3d7b0p7qn6gy1pygq6xn31fkasdqgqa40zidzjwiwl3h3g4"; depends=[ggplot2 plyr reshape2 rstan]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.0"; sha256="021x40l5p6ip5br3qnca6nywkx9fpmgx5jm8i2dngj6yz6rc3hag"; depends=[matlab statmod tensor]; }; CopulaRegression = derive2 { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; CopyDetect = derive2 { name="CopyDetect"; version="1.2"; sha256="1sahrlg1gk1q8ciq0a8hxrlyci5i8jxz8pjpy04alckxdrxfpqbi"; depends=[irtoys]; }; @@ -598,7 +604,7 @@ in with self; { DCchoice = derive2 { name="DCchoice"; version="0.0.15"; sha256="1qdqn45ipq0806r25ri4aygzq48k8j5k8rlhi1cafym421yq6bfg"; depends=[Formula interval MASS]; }; DCluster = derive2 { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; DClusterm = derive2 { name="DClusterm"; version="0.1"; sha256="0xkl4677vqy4sdkm0fczscqszjxk1kfmlbzdgm88shcnjzjg71d8"; depends=[DCluster gridExtra latticeExtra lme4 pscl RColorBrewer sp spacetime xts]; }; - DDD = derive2 { name="DDD"; version="3.3"; sha256="1rjk35gz8zq0xprzag9nzfs569pm7nhl7bfrvcnapigd2h7gw612"; depends=[ade4 ape deSolve expoRkit Matrix phytools SparseM subplex]; }; + DDD = derive2 { name="DDD"; version="3.4"; sha256="0rjn28ndwa5cp23xdk830qidgs0kg3rx34yipkfg1bi4r7751was"; depends=[ade4 ape deSolve expoRkit Matrix phytools SparseM subplex]; }; DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; DDIwR = derive2 { name="DDIwR"; version="0.2-0"; sha256="0dqbldl5c6b8i5q3yk0hwd12lp8z9j4ilnmsqrkj69fv7mys9q3k"; depends=[foreign XML]; }; DDRTree = derive2 { name="DDRTree"; version="0.1.4"; sha256="02z4j777yxqp09gxwzmn6x5fjz4rbsp1lh4qj20vgdjp8wcn3pn0"; depends=[BH irlba Rcpp RcppEigen]; }; @@ -624,7 +630,7 @@ in with self; { DLASSO = derive2 { name="DLASSO"; version="1.0.0"; sha256="1rnm9f31d021yk2rhk7zcp2l9zbyxhpvdx32q6jjjjsiignjzc60"; depends=[MASS]; }; DLMtool = derive2 { name="DLMtool"; version="3.2.2"; sha256="13qpv6k3dn793kykxi9bmj2bl893lql7zsyfp6s3r7wp29k3kjj1"; depends=[abind boot MASS Rcpp readxl snowfall]; }; DMR = derive2 { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; - DMRMark = derive2 { name="DMRMark"; version="1.0"; sha256="09bw1iyyc4hqy6cjbci736zh0qzdfzk1s90in93f7s967d73mj8w"; depends=[ellipse MCMCpack mvtnorm]; }; + DMRMark = derive2 { name="DMRMark"; version="1.1.0"; sha256="11kwlk0q5c548m28n3hjsnmn8fcbjwsaw29qr4lb503mqsm2k7wn"; depends=[ellipse MCMCpack mvtnorm]; }; DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAprofiles = derive2 { name="DNAprofiles"; version="0.3.1"; sha256="0chsndrmanb2swmhfan9iz1bzz3jsvk24n7j9fnjxibckmn2fdpv"; depends=[bit Rcpp RcppProgress]; }; @@ -642,6 +648,7 @@ in with self; { DRIP = derive2 { name="DRIP"; version="1.1"; sha256="050xfq30fp9m03ig938bci2haiglj6jj4k327fpz7r2y78cgcnn4"; depends=[caTools readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.2"; sha256="1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; + DSAIDE = derive2 { name="DSAIDE"; version="0.4.0"; sha256="1dy6kxk63yaa8npaszcsc5g5is8ikcdfxkk1csy34m6q5l18yxar"; depends=[adaptivetau deSolve knitr shiny]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; DSL = derive2 { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; }; DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; @@ -705,12 +712,13 @@ in with self; { DiceView = derive2 { name="DiceView"; version="1.3-1"; sha256="0c7i1jy13d5bj822q1rp0d7gmmfjd00jaah34pnj8fzwyrq404z9"; depends=[DiceEval DiceKriging rgl]; }; DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[fdrtool igraph multtest pcaMethods]; }; + DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; Digiroo2 = derive2 { name="Digiroo2"; version="0.6"; sha256="1b1ahhqz5largjadlk5n6nw2183c05k28mksb1wm26y0lps0vdgr"; depends=[maptools spatstat spdep]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; }; - Directional = derive2 { name="Directional"; version="2.4"; sha256="1yrk0x4dydsx82415kv6a2asbd1d06ac7vyqi5j6rm4sa5cp6qmb"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; + Directional = derive2 { name="Directional"; version="2.6"; sha256="0qgaxsicrklkarp25k10z8w51gdidl421hnbiiyrjfslxlghqr2n"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; }; Disake = derive2 { name="Disake"; version="1.5"; sha256="1fw45fmnir6h34jw8917mhyz6cgzbq4ywyyf51qxhm68wgzy9h17"; depends=[]; }; DiscML = derive2 { name="DiscML"; version="1.0.1"; sha256="0qkh0yak1kmzxxx0cqb47zgrj8v2s1d5danpibwwg43j138sb73l"; depends=[ape]; }; @@ -724,7 +732,7 @@ in with self; { DistributionUtils = derive2 { name="DistributionUtils"; version="0.5-1"; sha256="0gw531wfrjx1sxh17qh48dwbxnibgr0viga07vsp8nay7l02jap9"; depends=[RUnit]; }; DivE = derive2 { name="DivE"; version="1.0"; sha256="1ixkk8kd3ri78ykq178izib0vwppnbiwbpc1139rcl8f5giiwcdh"; depends=[deSolve FME rgeos sp]; }; DivMelt = derive2 { name="DivMelt"; version="1.0.3"; sha256="03vkz8d283l3zgqg7bh5dg3bss27pxv4qih7zwspwyjk81nw3xmr"; depends=[glmnet]; }; - DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.5"; sha256="009fy4c11w0p30jpd94vj020pnrzm8z2iwlhkdij1f14ifpamzv2"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; + DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DiversitySampler = derive2 { name="DiversitySampler"; version="2.1"; sha256="1sfx7craykb82ncphvdj19mzc0kwzafhxlk9jcxkskygrlwsxfgg"; depends=[]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; DoE_base = derive2 { name="DoE.base"; version="0.29"; sha256="013p4y7imf6nb1mq7dx62c0nq5shf1yzdlfbri86icrdm00s63fd"; depends=[combinat conf_design lattice MASS vcd]; }; @@ -754,7 +762,7 @@ in with self; { EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.2"; sha256="1y9gl6gd8im7zhn5j4vhzk0ck620n4l9kwgxig2r27q6h652fqn9"; depends=[Matrix]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.3"; sha256="1iplg647qs52007h4vx507s643h7knisravif3v6rfyp6fhfl7v2"; depends=[Rcpp RcppArmadillo]; }; - ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.5"; sha256="0ml623q679id989gbr9k52719blgbhfcsrzi9xaqzvwcg5qq9bi5"; depends=[jsonlite shiny]; }; + ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.8"; sha256="1yy3qxp1555h76xybnsxqnwg65flwp473wif9r1wx9965v8v6brq"; depends=[jsonlite shiny]; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDR = derive2 { name="EDR"; version="0.6-6"; sha256="10m92p3fy5z2kca4h9awwmvs4pqri92habkvgjvjl5ira09yvyi7"; depends=[sm]; }; @@ -843,8 +851,9 @@ in with self; { EnvCpt = derive2 { name="EnvCpt"; version="0.1.1"; sha256="052yz26lypcffwnxdqxm2d029rzcdkw5dvf2xyvyhi5lcnxjrn9r"; depends=[changepoint forecast MASS zoo]; }; EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; }; EnvStats = derive2 { name="EnvStats"; version="2.2.1"; sha256="0gjjw2pvqh4m18f7m0pkcr1lsryqmfai1kqc34146h1a4wv7gbdv"; depends=[ggplot2 MASS]; }; + EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.7"; sha256="0pc1k9xr6ghm7v4cpi8qkz0b3xbq6yy4r3fqjlqly16rsvznnpcr"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival]; }; + Epi = derive2 { name="Epi"; version="2.10"; sha256="0kmyan9jhjsr9f1yhff94yyy56xhm9irfrzm2m4dpf56376m2w8b"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival]; }; EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.10.0"; sha256="0x0ah55nx68mq05hpp29g9h21is3kx9d84r82j4x4asyqjv92s7v"; depends=[]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.0"; sha256="0hpysjl8wfgylbp4ddxmi5msvlp1w70c6pxggc2bwdgap3s127f3"; depends=[deSolve ggplot2 reshape2]; }; @@ -957,7 +966,7 @@ in with self; { FatTailsR = derive2 { name="FatTailsR"; version="1.7-0"; sha256="0mywkrq929a0v20a1zaa9zc5l9k2kw5y1zz458iff3i56pzrcrsj"; depends=[minpack_lm timeSeries]; }; FeaLect = derive2 { name="FeaLect"; version="1.10"; sha256="1r7rgcadrqjhxn2g2w16axygsck82fprxg7l14ai11bn4b7h4pmb"; depends=[lars rms]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.1"; sha256="1y46bk2yddq0n8p1kj6fwi9q23lsblsrlgf7b630vcbvv8mpz5x2"; depends=[BH digest magrittr Matrix Rcpp]; }; - FedData = derive2 { name="FedData"; version="2.4.0"; sha256="1rai3hgx10q6jcjpqd0jsqvp15am3i48n1ph6dl88mhwgiblvh9w"; depends=[curl data_table devtools doParallel dplyr foreach Hmisc igraph lubridate magrittr ncdf4 raster readr rgdal rgeos soilDB sp]; }; + FedData = derive2 { name="FedData"; version="2.4.5"; sha256="1ad5dffrp2rwl8sdbik40g8p0c1drb5fxkcysh3qzsd6wi1zc2ff"; depends=[curl data_table devtools doParallel dplyr foreach Hmisc igraph lubridate magrittr ncdf4 raster readr rgdal rgeos soilDB sp]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.4"; sha256="1mcsr48hvrpfnk2f0z1bc8556jf848bpd8prm3y46gqdj452wpmm"; depends=[geoR mapdata maps proj4 sp]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.4"; sha256="0k5pafgrcb7smklgzgw2mf6npj55nm5fsr6k0xp6ji380rvdxc0y"; depends=[data_table devEMF ggplot2 gridExtra plyr png ReporteRs sqldf stringr]; }; FieldSim = derive2 { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; }; @@ -996,7 +1005,7 @@ in with self; { Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; FreeSortR = derive2 { name="FreeSortR"; version="1.2"; sha256="01h29p9qhlkd2qmmmw23wh9lrsggvp1h3r2laqi2lln7d7srcwbj"; depends=[ellipse smacof vegan]; }; FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; - FunChisq = derive2 { name="FunChisq"; version="2.3.3"; sha256="0n4c6lfljp7mbl05r75rj31q0rkwnmj6gif3fmxmv1y5x7x2jrxj"; depends=[BH Rcpp]; }; + FunChisq = derive2 { name="FunChisq"; version="2.4.0"; sha256="06nnqij3cki1mdks5r422ydyc1hswfv03686jx5g9fcgxbs907kh"; depends=[BH Rcpp]; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.8"; sha256="04rfmdy1hzxqy16csj6cf3x2kj9lg1xxvvnn494xjdwjdkfkyl09"; depends=[mvbutils]; }; Funclustering = derive2 { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; }; @@ -1059,7 +1068,7 @@ in with self; { GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.5"; sha256="0mr8qhccp8dndp43v8ym22f4djrjr8qcxbv61lwabk2462llwln6"; depends=[cluster]; }; - GLDreg = derive2 { name="GLDreg"; version="1.0.6"; sha256="02g4g3w7dq5jjrir1fcxirbx36ci04fcadli921r6hz4xifhil7d"; depends=[ddst GLDEX]; }; + GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLSME = derive2 { name="GLSME"; version="1.0.3"; sha256="0flja5gk25k4z9hwskvdw4c1f88scc47xvc1l3d2447fkfrb0bwc"; depends=[corpcor mvtnorm]; }; @@ -1136,7 +1145,6 @@ in with self; { GeneralTree = derive2 { name="GeneralTree"; version="0.0.1"; sha256="0wlhpxky4vckmcg0imvcxsg2rg2pbrh5822lpkdp28aj7b4s7wqv"; depends=[R6]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-1"; sha256="0rx07z5npawvsah2lhhkryzpj19sg0sl0w410gmff985ksdn285m"; depends=[DistributionUtils RUnit]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; - GeneticTools = derive2 { name="GeneticTools"; version="0.3.1"; sha256="033dwg94ns4mz2ixgn180h6qd783gm492p9qs2nf8498cb4ycg9m"; depends=[gMWT plotrix Rcpp RcppArmadillo snpStats]; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.3"; sha256="1ga2myi2y5rpab0v58y1ndfqrxmbl1wdr3d0s8215apwiax4rfm4"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; @@ -1178,7 +1186,7 @@ in with self; { GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; GrowingSOM = derive2 { name="GrowingSOM"; version="0.1.1"; sha256="0pzhf27kk9nc73w6wp0qd50i7hk7904y90l2ppdgy738z9gcbz4i"; depends=[plotrix]; }; GrpString = derive2 { name="GrpString"; version="0.1.1"; sha256="0kqz2m6ycj83s5kcgbf7l6cpfgfrza7b0y23cgljf952pys2ndys"; depends=[plyr]; }; - GsymPoint = derive2 { name="GsymPoint"; version="1.1"; sha256="0dps7mwq17y4fd64if2d99pr38y2wn3mksv3nsijysj0bhiwzh11"; depends=[ROCR Rsolnp truncnorm]; }; + GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; GuardianR = derive2 { name="GuardianR"; version="0.8"; sha256="07bg7wz7d2rgjkw5ldzi5p7nd4ch39m6ql5w4sqnvds4r08jspj9"; depends=[RCurl RJSONIO]; }; Guerry = derive2 { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; @@ -1218,12 +1226,12 @@ in with self; { HMR = derive2 { name="HMR"; version="0.4.1"; sha256="1acaph5q6vgi4c7liv7xsc3crhp23nib5q44aszxhramky0gvaqr"; depends=[]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; - HRM = derive2 { name="HRM"; version="0.4.3"; sha256="1g6kka2havns39c2m3ynq3k2zfl5vjvrf2xhhr3xhfd1p4sl0c6g"; depends=[ggplot2 MASS matrixcalc plyr reshape2]; }; + HRM = derive2 { name="HRM"; version="0.5.0"; sha256="0xppx5ip0qhrfhri7yzqmkqrr6lf1a4pmk2lc5vxmsxdfs273y9r"; depends=[ggplot2 MASS matrixcalc plyr reshape2]; }; HRQoL = derive2 { name="HRQoL"; version="1.0"; sha256="1gr9rhr8gdnh7bw2v3r0xc3yhmzrx2gzgsd8wd5mmsp81ph0h5lz"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; HSAR = derive2 { name="HSAR"; version="0.4.0"; sha256="1k40hh546hrdm2yh64l51sky17mnmkzckb7l3bnkpw495rsk73g2"; depends=[Rcpp RcppArmadillo spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-7"; sha256="16qmsyin8b7x9q3xdx74kw6db6zjinhxprp6pfnl6ddwxhz3jzzf"; depends=[]; }; - HSAUR2 = derive2 { name="HSAUR2"; version="1.1-14"; sha256="0psykccxyqigkfzrszy7x3qhdw02kppzgz0bqr21q8zh51jb2y3v"; depends=[]; }; - HSAUR3 = derive2 { name="HSAUR3"; version="1.0-5"; sha256="0hjlkmxp1yhwkfcbx16nda96ysqddjrcvl4z52w2ab84prqn6196"; depends=[]; }; + HSAUR2 = derive2 { name="HSAUR2"; version="1.1-15"; sha256="0vsmx201dwfgdwm9kz6nl2z5v0x3fpkbf5qmj39zb174rfz4bvhf"; depends=[]; }; + HSAUR3 = derive2 { name="HSAUR3"; version="1.0-6"; sha256="1mn9nawi2nv6qmzm5h3259sb4k0ywc281rfnwjcv8wv88i11qiwd"; depends=[]; }; HSROC = derive2 { name="HSROC"; version="2.1.8"; sha256="056g6iygrddmpmg5nnilqrlw2xavmcc9q07z942vc2nivw06h346"; depends=[coda lattice MASS MCMCpack]; }; HSSVD = derive2 { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; @@ -1238,7 +1246,7 @@ in with self; { HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; }; Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; HapEstXXR = derive2 { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; - Haplin = derive2 { name="Haplin"; version="6.0.1"; sha256="1hdni0ni7qbhcwg7ficv09dxj20cavyzijwdc2vk41smdsm9gg9i"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; }; + Haplin = derive2 { name="Haplin"; version="6.2.0"; sha256="1r1qmald48xl1cxk2ynvh8p15958x52dlp3bdb303q2v8w66nfjm"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.5.6"; sha256="1zpba8l8fjc7ncrw0virfv1s9zaa4xsyn63jiay8ivik98siqhkb"; depends=[mice]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; @@ -1299,7 +1307,7 @@ in with self; { ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; ICtest = derive2 { name="ICtest"; version="0.2"; sha256="0pd16cafhx7cfwasbdli0kin83wayn7hil8allpacv9yiinj2bq3"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; }; - IDPSurvival = derive2 { name="IDPSurvival"; version="1.1"; sha256="0vd2dkspsq8aqihjs7dqpfb1xk5ydnwqwzhhg142mywgf0zg2fkh"; depends=[gtools Rsolnp survival]; }; + IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.2.2"; sha256="0pfvdy82i5w6zrda2022m1v22dv2qsgcj1y7f8hqmaqvqgczizfk"; depends=[]; }; IDTurtle = derive2 { name="IDTurtle"; version="1.2"; sha256="15r806vk5lmvyclsynzq9qr8pgwwkxal1j6xcq6408i8kq1hk3fb"; depends=[]; }; @@ -1344,11 +1352,13 @@ in with self; { Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; }; + ImputeRobust = derive2 { name="ImputeRobust"; version="1.1-1"; sha256="1rc22p1wy9y20swv40z9f1yjswhzyifymbgrdlf1ycxm9dzn4nyk"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InPosition = derive2 { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; }; InSilicoVA = derive2 { name="InSilicoVA"; version="1.1.4"; sha256="16978c1bdxbp3xxrcnx8yyar1dd292a5i43qhcymdp7nnprd6gc7"; depends=[coda ggplot2 rJava]; }; IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; }; IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; }; IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; + IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.1"; sha256="0phl0p6k4jsznvg7wn2vr4id5y5p0x81s7mj4sss9pjz49kj0laj"; depends=[]; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive2 { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; @@ -1373,6 +1383,7 @@ in with self; { Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="0.83"; sha256="1iwhgfb7z9pbnwzn626v0w0ycfjlhpaiv1yzm062samvr0lqiyrh"; depends=[enviPat plyr Rdisop]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.6-1"; sha256="16qlskxszpi24qsdl821n72pzdvmf1gg7lnlwyhyzhzzkh9az1pd"; depends=[glmnet mboost]; }; + InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; }; InventorymodelPackage = derive2 { name="InventorymodelPackage"; version="1.0.2"; sha256="1w35idsagl9v93ci3qmal3xbf11sy6h1k7xnv25c59ivfnpjpkva"; depends=[e1071]; }; IrishDirectorates = derive2 { name="IrishDirectorates"; version="0.1.0"; sha256="0741093vq1cqs9zh95fc6kwpd4a4r4yxvmcnp7f7j5xxyqy1h3xz"; depends=[]; }; IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; @@ -1496,7 +1507,7 @@ in with self; { LSTS = derive2 { name="LSTS"; version="1.0"; sha256="1vgdqyj6k50gqfffqfb4n3sw27jrq21nl2h8sz8942w4a8fn7sgv"; depends=[]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; - LTRCtrees = derive2 { name="LTRCtrees"; version="0.1.5"; sha256="08g6bb2fbjw7xssav1n2hgr3x7wdpczvbdz2kgrgv8bhl1f4k9yx"; depends=[partykit rpart survival]; }; + LTRCtrees = derive2 { name="LTRCtrees"; version="0.5.0"; sha256="18awxiln2ilr0jjyvkv47a3xy7v8rjlaksklb4pcn1kdlvb1nqf0"; depends=[interval partykit rpart survival]; }; LVMMCOR = derive2 { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[MASS nlme]; }; LW1949 = derive2 { name="LW1949"; version="1.0.0"; sha256="0icfgsh93f4i73p7wpacb6dsg4cdfh71l7rwhqknnifvb5nvp8sv"; depends=[MASS mgcv plotrix]; }; LaF = derive2 { name="LaF"; version="0.6.3"; sha256="0mp1g8pikmkahxgshgs4a7iryxzzcxhxdzvdn60s6m9h1addvhww"; depends=[Rcpp]; }; @@ -1559,7 +1570,7 @@ in with self; { MALDIquant = derive2 { name="MALDIquant"; version="1.16.1"; sha256="0058i0nc81qp7sj7j9bcy7s2vkmbacj5ycwdnvsfmsr172adxdar"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.10"; sha256="1h1lvmw3233wgy1wvpa6n5q5j6z27hg3k31rq4a7c53w8g1bsmi3"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MAMA = derive2 { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[genefilter GeneMeta gtools MergeMaid metaArray metaMA multtest xtable]; }; - MAMS = derive2 { name="MAMS"; version="1.0"; sha256="1y322is7c60naaz4cb090wpavw71y7hvx6n3k41ig8rfh096f60b"; depends=[mvtnorm]; }; + MAMS = derive2 { name="MAMS"; version="1.01"; sha256="0vm1pnh5bcggsip4cpbfif2j2glvbsscpnpjsycbd2y0m05asccz"; depends=[mvtnorm]; }; MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.0.4"; sha256="1xw0wk2a14xwgay3vw7s1sxpwrmm01lqnfphcnhf1iyhdsxqnnnc"; depends=[magic MASS Matrix plotrix plyr]; }; @@ -1611,7 +1622,7 @@ in with self; { MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.2"; sha256="04w0y5ib23l7nhj1947hwvfk6lpwwc11amqpyw1w53yj794g97wz"; depends=[linprog Matrix]; }; MDR = derive2 { name="MDR"; version="1.2"; sha256="0g2fvvcwagml6635va87nc0ijzy0pypx5aqzz7mf5w13j0wpm24y"; depends=[lattice]; }; MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; }; - MDplot = derive2 { name="MDplot"; version="0.3.1"; sha256="1d5gv47zaal6vsfi10vfjvawdm911pnhjradhkrd647w54iykl59"; depends=[gplots gtools MASS RColorBrewer]; }; + MDplot = derive2 { name="MDplot"; version="1.0.0"; sha256="18q25qxwqd8jwn8y781xqisd15k9p81nmxkx41pyi703njav1fm1"; depends=[gplots gtools MASS RColorBrewer]; }; MEET = derive2 { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; }; MEGENA = derive2 { name="MEGENA"; version="1.3.6"; sha256="0ylv7kbk0x3rm08aiwci4p3kma08qj4szlw2h1d6wcqmipy93v8s"; depends=[BH cluster doParallel foreach fpc ggplot2 ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; @@ -1645,13 +1656,14 @@ in with self; { MLCM = derive2 { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; }; MLDS = derive2 { name="MLDS"; version="0.4.5"; sha256="1a5y031kd6zx0zqlk6dvxzsv3isbvg9jap4gqad2jwryh0a9x3c1"; depends=[MASS]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; + MLID = derive2 { name="MLID"; version="1.0.0"; sha256="1zbydvw4sv5q0lh2d4z0alrlc28dy6xnxd67iq8qd0k28gpwnzd1"; depends=[lme4 nlme]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; MLRMPA = derive2 { name="MLRMPA"; version="1.0"; sha256="0gfbi70b15ivv76l3i0zlm14cq398nlny40aci3vqxxd0m2lyyx5"; depends=[ClustOfVar]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; MM = derive2 { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[emulator magic Oarray partitions]; }; MM2S = derive2 { name="MM2S"; version="1.0.5"; sha256="0h10cbsdnndllwq4cb4aamjy104ckvn01skh7rixa1iqdndac9fx"; depends=[GSVA kknn lattice pheatmap]; }; MM2Sdata = derive2 { name="MM2Sdata"; version="1.0.1"; sha256="1prx0gm9shizj45382qhja417y18jp6spk2hmgrzb7sbniyqs5pd"; depends=[Biobase]; }; - MMDai = derive2 { name="MMDai"; version="1.0.0"; sha256="0xrdynns2w3rgpf2hliyn80x3an17kpisbkpfhwsak87pbfamk9i"; depends=[DirichletReg]; }; + MMDai = derive2 { name="MMDai"; version="1.0.1"; sha256="0bh25yhdyk5i4gh4h6f5i8gkwympy3i2xwlkgrj18jzghyy02rx2"; depends=[DirichletReg]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; MMS = derive2 { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.1"; sha256="16dwmpj13rzxmd2x7xaakw2zq2aly7ajjbfnc39qvdzk6n2x37wn"; depends=[]; }; @@ -1704,7 +1716,7 @@ in with self; { MVN = derive2 { name="MVN"; version="4.0.2"; sha256="0k8fbhnw2lbjgafab4m6j7nkzclj1226fdiv8bmv5vcm6g82nb19"; depends=[MASS moments mvoutlier nortest plyr psych robustbase]; }; MVR = derive2 { name="MVR"; version="1.31.0"; sha256="114qv235dmbmdlg2dssbgn0bj78r6khg58xswvv98d58kfypw581"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; - MVar_pt = derive2 { name="MVar.pt"; version="1.9.6"; sha256="0gwprgf22lna4d8bifq381p5hv7ws3nnj08m6rrjnisgl158459w"; depends=[]; }; + MVar_pt = derive2 { name="MVar.pt"; version="1.9.7"; sha256="1d5xgq3ydzv69v5dazkmmbxgag530cx5m1a3566kxkdk02rd8i71"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; MXM = derive2 { name="MXM"; version="0.9.8"; sha256="1bi8lkw3dx5m2p6r8yr60ysxs0ijkaahjvh7c8q7vlg8116fdvbp"; depends=[doParallel e1071 energy foreach lme4 MASS nnet ordinal quantreg relations Rfast speedglm survival visNetwork]; }; @@ -1737,7 +1749,7 @@ in with self; { MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-2"; sha256="0mk5h9bafy1ndi1h6vcjh285xfj38gjpiz6n8xcmp8zh6vi6gx70"; depends=[ggplot2 raster]; }; MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.4.8"; sha256="007i1zmklcmj76kmyl60wvcgb9vzrn677k81n5mmfz36vr0zkp8f"; depends=[dplyr lubridate rgdal rgeos rvest sp stringr xml2]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; - Mcomp = derive2 { name="Mcomp"; version="2.05"; sha256="0wggj0h0qxjwym1vz1gk9iwnwia4lpjlk6n46l6hinsdax3g221y"; depends=[forecast tseries]; }; + Mcomp = derive2 { name="Mcomp"; version="2.6"; sha256="01m2kawkxs9k7va3bvv7bknl4y13rhy8zczc093f10msgy6nqncl"; depends=[forecast ggplot2]; }; MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; @@ -1752,6 +1764,7 @@ in with self; { MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; MetStaT = derive2 { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[abind MASS pls]; }; MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; + MetaComp = derive2 { name="MetaComp"; version="1.0.1"; sha256="11h0b62c54vgvdnxfjg233ripyfpi4b1d9lkpkc09d8jifhbga7q"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.1.0"; sha256="1kzdk21xpbvwibs8501zwdb9lzj7g5nv2zqaskg9x0szshhg8vpp"; depends=[gnm]; }; MetaDE = derive2 { name="MetaDE"; version="1.0.5"; sha256="1ijg64bri5jn2d3d13q1gvvfyqmbh6gn0lk6dkihixf0jwvjdyqi"; depends=[Biobase combinat impute survival]; }; MetaIntegrator = derive2 { name="MetaIntegrator"; version="1.0.3"; sha256="0611k497ixy0f51lmqzs08zqqq5krrxrm7m0xqdl18gkwrw3w656"; depends=[Biobase DBI GEOmetadb GEOquery ggplot2 gplots multtest preprocessCore reshape rmeta Rmisc RMySQL RSQLite stringr]; }; @@ -1833,6 +1846,7 @@ in with self; { MultiRR = derive2 { name="MultiRR"; version="1.1"; sha256="1jrhx3nlqwsv3i6r8fs142llw88qad41rsh0sj1pv1gb928zpvl3"; depends=[lme4 MASS]; }; MultiSV = derive2 { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; }; MultinomialCI = derive2 { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; + MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.1"; sha256="0x13q2kckw7c7bl35vdxyhhr7ij62wf0qbkxa40fi6aq2gjh89m6"; depends=[lme4 Matrix statmod]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.2"; sha256="1xp1bdkp87kvgsg4q5b91r712l6sdvmlcvaychi72pvgv33a8x11"; depends=[bootstrap Rcpp]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; Myrrix = derive2 { name="Myrrix"; version="1.1"; sha256="15w1dic6p983g2gajbm4pws743z68y0k2hxrdwx6ppnzn9rk07rs"; depends=[Myrrixjars rJava]; }; @@ -1932,6 +1946,7 @@ in with self; { OIsurv = derive2 { name="OIsurv"; version="0.2"; sha256="148mpjj5navc1vrl72y87krn4lf3awnd32z3g4qqaia404w5w7p7"; depends=[KMsurv survival]; }; OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; }; ONETr = derive2 { name="ONETr"; version="1.0.3"; sha256="14l56qcmyyk2ivcfkfv7j2k4i1mfrngpi9zcc88w6xfhz5qlb548"; depends=[plyr RCurl XML]; }; + OOBCurve = derive2 { name="OOBCurve"; version="0.1"; sha256="1dx2lfdpfl0aq1wshjrwa58wz20s57q03pzfj5rv6xyfmm8qhrzw"; depends=[mlr randomForest ranger]; }; OOR = derive2 { name="OOR"; version="0.1.1"; sha256="09c7c2inpnag3kckrg9lfzxd3giqkj9xm91ibjkgpfv68nf733qc"; depends=[]; }; OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-9"; sha256="0pf8rv5wydc8pl4x57g7bk2swjabaxdgijgsigjy5wihfcb48654"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; @@ -1963,7 +1978,7 @@ in with self; { OpenML = derive2 { name="OpenML"; version="1.2"; sha256="16zvxr45jcw4z30jmg9l6xdlkq76wbi89xj8c328qkwlghik17sy"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.1-2"; sha256="1cpsbjmqql0fsjc1xv323pfkhfr9vrcv5g4j3p1qc5zn4z9pq7r6"; depends=[]; }; OpenMx = derive2 { name="OpenMx"; version="2.7.4"; sha256="18zgypwjd37fcmsc3gzsa3ww6b7l9y9sm7jgj5x79hzqn0mfknfv"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; - OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.9"; sha256="1s40c2yfd4a4khs0ghlbzii94x8cidg851bivanplg2s51j5jrhk"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; + OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.10"; sha256="0ikw8l9hffcaa094y6pnvyc3ly5jb02djaakz668ba15a0yw0wmb"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; @@ -2038,7 +2053,7 @@ in with self; { PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-3"; sha256="07qxyszj0f7qwrg5ixvciy33mjsfxxi9rk32a1fz46z8wiwfil9i"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-3"; sha256="1xhc84k4iszvfawwwzrwclfs41nvb8bmyygapxmsxjky725s7k1g"; depends=[base64enc]; }; - PKNCA = derive2 { name="PKNCA"; version="0.7.1"; sha256="170chkdh78xmcw2p1xm23x4q5kj0637i0nbrwz73cxg0yni4h3qa"; depends=[digest doBy lattice nlme plyr tidyr]; }; + PKNCA = derive2 { name="PKNCA"; version="0.8.1"; sha256="1by2yp1ngqv06w7dfl7lbb80gnmpid4xg1yhk4zvx8bwss0ggzph"; depends=[digest dplyr lattice nlme plyr tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKgraph = derive2 { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 lattice proto rggobi RGtk2]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; @@ -2055,7 +2070,7 @@ in with self; { PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.1"; sha256="02073yxdwns9mnnjvw13ydw1s3vrxl53szcd9jy8ibj78vnm57r3"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; PRIMsrc = derive2 { name="PRIMsrc"; version="0.6.3"; sha256="18vk968dz9508bnnyhq2wz7py72ld42c0ah22a7d8n3nwx26ldbd"; depends=[glmnet Hmisc MASS survival]; }; - PRISMA = derive2 { name="PRISMA"; version="0.2-5"; sha256="06z4z1rbsk5a8kpbs6ymm0m02i8dwbmv783c3l2pn4q3pf6ncmd5"; depends=[ggplot2 gplots Matrix]; }; + PRISMA = derive2 { name="PRISMA"; version="0.2-6"; sha256="1yzcx4js0xaxp1mp7ginhfz8jji49rkw3x15a9mlmpz260gkfs98"; depends=[ggplot2 gplots Matrix]; }; PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; }; PROFANCY = derive2 { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[igraph lattice Matrix]; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; @@ -2078,7 +2093,7 @@ in with self; { Pade = derive2 { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; - PanJen = derive2 { name="PanJen"; version="0.1"; sha256="09jl3ny4wcz7kd9kvqp5rscl8amxhpibzhny9lnakck3jrwa20hr"; depends=[Formula lasso2 mgcv RColorBrewer]; }; + PanJen = derive2 { name="PanJen"; version="1.1"; sha256="00bvmwskawmi4x89wcn6k37nrdxfil7j1n6kc368yxvrfwvxgssy"; depends=[Formula lasso2 mgcv RColorBrewer]; }; PanelCount = derive2 { name="PanelCount"; version="1.0.9"; sha256="1b6c83qypjc3ylvhh24xm4pjk8w34s24v0i9ddlmg92f1518hlkj"; depends=[Rcpp RcppArmadillo statmod]; }; Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; @@ -2184,6 +2199,7 @@ in with self; { ProteinDescriptors = derive2 { name="ProteinDescriptors"; version="0.1.0"; sha256="1ydm8aym1wwxmfh4krh84nmj1wkgb574igg1sywl58l3qlnhya0l"; depends=[]; }; Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; PsiHat = derive2 { name="PsiHat"; version="1.0"; sha256="0an71x75j6ih55alxp7kfwi0qf4z3y5bwswrjk01z2w4b9glacqh"; depends=[qvalue]; }; + Pstat = derive2 { name="Pstat"; version="1.0"; sha256="13mm5jk3frl74sm988q8yazm790wlx2npf2cav6h5rb8ck637ffb"; depends=[]; }; PsumtSim = derive2 { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; }; PtProcess = derive2 { name="PtProcess"; version="3.3-12"; sha256="14d39xxgkqnqq79v9sp6g9csj2rp6pix2hzg9acjdmw1xyadn71h"; depends=[]; }; PubBias = derive2 { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; }; @@ -2223,15 +2239,15 @@ in with self; { QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; Quandl = derive2 { name="Quandl"; version="2.8.0"; sha256="0n1c4343ki8nia7qrq2m9zb7b05qr3yjwvk1ji7m44sa613w6y5l"; depends=[httr jsonlite xts zoo]; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; - QuantTools = derive2 { name="QuantTools"; version="0.5.3"; sha256="01q71n9q9fqg6yn8mxnmd3j0mwp7ryxrkfw5cvpjwd1i9ld5d7jd"; depends=[data_table fasttime Rcpp RCurl readxl]; }; + QuantTools = derive2 { name="QuantTools"; version="0.5.4"; sha256="01xn9ksb2v3glqpxhdizp8b0786azkm8kv6xxdqk3q7ysm44lac1"; depends=[data_table fasttime Rcpp RCurl readxl]; }; QuantifQuantile = derive2 { name="QuantifQuantile"; version="2.2"; sha256="01bdz8a6nhjil6n2z62x5g41v3d6md5v16g0ladsl5zc8raivqdq"; depends=[rgl]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; - QuantumClone = derive2 { name="QuantumClone"; version="0.16.8.19"; sha256="019rhpvc4by3pizy3i6sw04230hzhmq79mkhjin3777mn9gdnzfm"; depends=[doParallel foreach fpc ggplot2 gridExtra optimx]; }; + QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.3"; sha256="1j7v6cg3rafs9a8qmlmqk1an39kd6h6pbspd7zalmnq1v1a10m91"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-8"; sha256="113pxmvwwn331g5dcv2zwsvvi5jgc1v41f38sw9gms06i8x3a7q6"; depends=[edgeR mgcv pracma]; }; Quor = derive2 { name="Quor"; version="0.1"; sha256="1ncl4pj472m881fqndcm6jzn4jkwbnzpc639c9vy5mxa4z569i1g"; depends=[combinat]; }; R_cache = derive2 { name="R.cache"; version="0.12.0"; sha256="006x52w9r8phw5hgqmyp0bz8z42vn8p5yibibnzi1sfa1xlw8iyx"; depends=[digest R_methodsS3 R_oo R_utils]; }; R_devices = derive2 { name="R.devices"; version="2.15.1"; sha256="09gmzb87n1ybqwyp4jdpih3w3s7nqkr4hd1qhcqr57kp2pj9jp9x"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; - R_filesets = derive2 { name="R.filesets"; version="2.10.0"; sha256="0wdqxskmamqygvxh9jmvkhkgm906yrqci6vivczr9la0j4zwnn0b"; depends=[digest future listenv R_cache R_methodsS3 R_oo R_utils]; }; + R_filesets = derive2 { name="R.filesets"; version="2.11.0"; sha256="0hjmd86zqsd9v17ma9r734pk9b0k53ayb52w5mm19d9hnl3wnv08"; depends=[digest future R_cache R_methodsS3 R_oo R_utils]; }; R_huge = derive2 { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; }; R_matlab = derive2 { name="R.matlab"; version="3.6.1"; sha256="013qi3iikikgib23cqg74vpp2ymsbw1zd6zny7m1km2js6gmfchh"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; }; @@ -2253,7 +2269,7 @@ in with self; { R2admb = derive2 { name="R2admb"; version="0.7.15"; sha256="1v01fbcc7hx6mswn4gkwpm6k171956wk51ls6sgca1i6ia6ckmli"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.5-7"; sha256="0h1d27cddyacx5m5f23rlki97iwni7clffmb2k7a4bznlnjhn50a"; depends=[abind coda R2WinBUGS rjags]; }; R330 = derive2 { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; - R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.1"; sha256="08s999m1kfjzabng41d5fpkag7nrdbricnw7m4jvj1ssqfnil2hj"; depends=[bitops RCurl RJSONIO]; }; + R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.5"; sha256="1wd1yqbs8m4zqvdm6x7mrcyk5b5pr4azm3r49nrilg8fnr2bk9rz"; depends=[bitops RCurl RJSONIO]; }; R4dfp = derive2 { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; }; R6 = derive2 { name="R6"; version="2.2.0"; sha256="1ir51pb0y6yj05qaxsflk4a6hv8n73cwlb0qajcskbrz632dsyvx"; depends=[]; }; R6Frame = derive2 { name="R6Frame"; version="0.1.0"; sha256="0ib0van2qk0p89qmii8naj1jx56i6j7srvydzm41pyq2xdg0bmga"; depends=[data_table lazyeval R6]; }; @@ -2350,6 +2366,7 @@ in with self; { RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; RImpala = derive2 { name="RImpala"; version="0.1.6"; sha256="03f4cq4bcrydpy78ypir7smj7abrcfynz0zzlgwgc60vh7vl79lz"; depends=[rJava]; }; RInSp = derive2 { name="RInSp"; version="1.2"; sha256="0zg46qw44wx17ydcz592gl4k9qq08dycmsshxxqkjf92r3g3l6wm"; depends=[]; }; + RInno = derive2 { name="RInno"; version="0.0.1"; sha256="15rbd757am55kr1jkm1vh3ida5h4wbfcj0brj6ddjbpfivybg8wr"; depends=[curl httr jsonlite stringr]; }; RInside = derive2 { name="RInside"; version="0.2.13"; sha256="0cfhljdai9kkw5m01mjaya0s02g4g1cy1g4i0qpjkhgqyihsh7dy"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.1-15"; sha256="0f7g0w8bnbxryll48rnn7blgskgcdqqx9xv4fqmwcbkbasjz37va"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-5"; sha256="0cdqil9g4w5mfpwq85pdq4vpd662nmw4hr7qkq6510gk4l375ab2"; depends=[DBI rJava]; }; @@ -2430,7 +2447,7 @@ in with self; { RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEnsemble = derive2 { name="RPEnsemble"; version="0.3"; sha256="052c9cnsrjxbk2yxj08psy3nw0mq3mdr75fhnxpz64n4cqzxbr2q"; depends=[class distr MASS]; }; RPMG = derive2 { name="RPMG"; version="2.2-1"; sha256="03gqam7lp6ycrwm30gdwh2irqkcviwzk74ysyxff7b23ng4jkz1j"; depends=[]; }; - RPMM = derive2 { name="RPMM"; version="1.20"; sha256="09rwrcd8jz0nii1vx0n3b4daidiq0kp0vf88bvi84y4i06743il7"; depends=[cluster]; }; + RPMM = derive2 { name="RPMM"; version="1.25"; sha256="1j48dh434wfhfzka0l21w6f73qlwfm70r9gdddhn504i2d5m4jph"; depends=[cluster]; }; RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.3"; sha256="0qgvr671zir8d1q5rzdy0gkljsfr7bz1aj47xpkbbpkjr5hqgihj"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.4-1"; sha256="0ydz206ir797rv435if3653fnnyihgmhr5d0n4zhlrs1m1zy74k2"; depends=[DBI]; }; @@ -2472,7 +2489,7 @@ in with self; { RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.1"; sha256="04ghck76jh7w6kgzdszkzjwj9fhyngq13mf9iybavxph5wcy7xgq"; depends=[binman caTools httr openssl wdman XML]; }; - RSentiment = derive2 { name="RSentiment"; version="2.1"; sha256="0gcmgnczqhz8vzwj8img32z95si1ywbg2mvfd3rwlxzxqdkxg98v"; depends=[NLP openNLP plyr stringr]; }; + RSentiment = derive2 { name="RSentiment"; version="2.1.1"; sha256="1p8bffsngk0s91y4f7prnlr7w9bxh460mf5ibi7v4md7jbbvhcsf"; depends=[NLP openNLP plyr stringr]; }; RSiena = derive2 { name="RSiena"; version="1.1-232"; sha256="0qp3bqq5p19bg47m37s2dw8m4q91hnkc2zxwhsgb076q0xvvv9xq"; depends=[Matrix]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.10"; sha256="1wi2rv5wwibw8m0xd37f284b14irg2gnm31yz73c3wpic2sbf3wf"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.1"; sha256="1xxs5q25v3i0qf829xl8n90n2fx1anfgfrzvwzff4dm252y7b2gw"; depends=[RCurl]; }; @@ -2485,7 +2502,7 @@ in with self; { RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; }; - RSurvey = derive2 { name="RSurvey"; version="0.9.0"; sha256="09ivilmwvjjbs3451cyxhcgq2w9rx6b8b5dsgg6y7l478k5bffrw"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; + RSurvey = derive2 { name="RSurvey"; version="0.9.1"; sha256="0q0iyljdrg6avskqmsczda3008nrzg0lf1bmp4x188vx4dm0cs11"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTDE = derive2 { name="RTDE"; version="0.2-0"; sha256="1dj7dsj4256z9m70y2fpcgprxpqbgqxz0dqwn0jl80sj2325f66s"; depends=[]; }; @@ -2494,7 +2511,7 @@ in with self; { RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; RTriangle = derive2 { name="RTriangle"; version="1.6-0.8"; sha256="0mngwi7ybcg6lsk3f7faljwnzsfvyxln4jd2s2hiirr303ml4wzg"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.31"; sha256="1jqr871jkll2xmk7wk5hv1z3a36hyn2ibgivw7bwk4b346940xlx"; depends=[]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-62"; sha256="0b4g0ia5kawamm6mpzw04365j1cgf8py5dp18kdsqwgisxxm699f"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman statmod vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-63"; sha256="0ckpwblflvz48745rp46sx14lvkqpb3csrpapk22ihryr9zn17mh"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; RVPedigree = derive2 { name="RVPedigree"; version="0.0.3"; sha256="0v47bcdlcd0ydw4vffy1g9lj1azvyqwz4400nmlqshf9vqyhf9qq"; depends=[CompQuadForm doParallel foreach kinship2 ks Matrix snpStats]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; @@ -2639,7 +2656,7 @@ in with self; { Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.0.2"; sha256="1113dm41rhyimn7jc3pkrdqz3biqg5m174vz24jchhmn9n38zsss"; depends=[igraph RJSONIO]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; - RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.0"; sha256="1mli7h3d4vw0sds6pav74fzpw4c3lmy7jrlp0dw47cmfxg2rhslg"; depends=[isva quadprog]; }; + RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.1"; sha256="1w0cx988ixl10d8ylfsblmk1mdd9dhzxdhp9z4n1643dkd2xzr02"; depends=[isva quadprog]; }; RefManageR = derive2 { name="RefManageR"; version="0.13.1"; sha256="1yw3fbiis1gl7ih66b4vjr299xy3w164irmmdfsqr79n9h3p5kv7"; depends=[bibtex httr lubridate plyr RCurl RJSONIO stringr XML]; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.2"; sha256="1g23paq42xiiqavikbrflwmr8ikls9z97v1xpgg16pb88svdyayc"; depends=[]; }; @@ -2656,11 +2673,11 @@ in with self; { ReporteRs = derive2 { name="ReporteRs"; version="0.8.8"; sha256="1pw3hy3g0nc6amga59sb1nnwqc9asdpn6lh2zfh87y8nazrf1hf0"; depends=[gdtools htmltools knitr png R_utils ReporteRsjars rJava rvg shiny xml2]; }; ReporteRsjars = derive2 { name="ReporteRsjars"; version="0.0.2"; sha256="1abvgzxipg0cgiy26z14i99qydzqva6j2v7pnrxapysg7ml5cnjc"; depends=[rJava]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; - ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-1"; sha256="1x7kc0zh22pqi7dw4iav9dac8wpj491lpqbnaqfncyhswpdkimvi"; depends=[MASS Matrix pbapply]; }; + ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-2"; sha256="08b1aa3183k1y30dwabnd6x353mdp2sn5b908cpv84bs3fdzlrdp"; depends=[MASS Matrix pbapply]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.11"; sha256="1si21in7ykv4532xsz12v9nwzfj142bnbf14qc74fbp1p087k6c0"; depends=[httpuv httr rjson]; }; - Rfast = derive2 { name="Rfast"; version="1.7.4"; sha256="1yrg3iflppbpjmw8rah4jdgwksnqplc0l3ds492s9zrw51vxz38c"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfast = derive2 { name="Rfast"; version="1.7.5"; sha256="09nxyv2cb7z79nkcnb5wm58930yfhk6ndvznlqfg6xlihx0yjyq6"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; }; Rfmtool = derive2 { name="Rfmtool"; version="1.2"; sha256="1q359574fspwxy1lmlzfqk0cg3qih8jzh3rk74qr22jw0sp7bcyw"; depends=[]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; @@ -2765,7 +2782,7 @@ in with self; { SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; SAPP = derive2 { name="SAPP"; version="1.0.7"; sha256="0rms9kq87dypdfs248m4393lgpfx37qah0n1s109pfnjh3k64pm3"; depends=[]; }; - SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.6"; sha256="0mm3dls9w9q060pylrkl3zwzix9zprpljajfm6z8k5bbhha1qsbc"; depends=[]; }; + SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.7"; sha256="0xs2zjr3r3a39szip53qkcja3n89vr1hq46a2zcwl6s5gdbb1vyj"; depends=[]; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; @@ -2888,7 +2905,7 @@ in with self; { STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; STMedianPolish = derive2 { name="STMedianPolish"; version="0.1"; sha256="1mysmigksrgkgzz7cng5vn8i7q4marq144dpwww30lisw2jgraiq"; depends=[maptools reshape2 sp spacetime zoo]; }; - STPGA = derive2 { name="STPGA"; version="3.0"; sha256="093van0k48x7i7r6g2kzn59x58rpqizkkw99l67agndnij13kck9"; depends=[]; }; + STPGA = derive2 { name="STPGA"; version="4.0"; sha256="198h2wzhv5lnyqypn7s5lilywby2pq3zdx8vk4qd72bybfwwli2c"; depends=[]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2-2"; sha256="01njc7drq01r3364081dv9gn37vrql52zbrb60gd559f3jshqx3m"; depends=[kernlab MASS]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; @@ -3010,16 +3027,17 @@ in with self; { SpatMCA = derive2 { name="SpatMCA"; version="1.0.0.1"; sha256="06l2ayjwawjp1kap76jqbnbjhx7x27z7vfn5jd0pz4g764krpfdr"; depends=[fields Rcpp RcppArmadillo RcppParallel]; }; SpatPCA = derive2 { name="SpatPCA"; version="1.1.1.1"; sha256="0yk6sisl07wqrl16mzk6ch7567l87qrqlnzg976zq2s58cd6y3vh"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.2"; sha256="172i4khjb2fh818bq7wdfdm79fwxjwi60nqfj69dgbgcaww55ffr"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; + SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.1"; sha256="0bx31z91hf6vf22knf7bcn2j72jf123v8lvsfc7fjf0ssimqhpzz"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-2"; sha256="0ywybk9gziy2hzb1ks88q4rzs3lzzy6y3fzhja2s39ngg195hi6l"; depends=[fields maps]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-1"; sha256="108gxk0gbbjck9bgxvqb9h216ww21lmh2by0hrhzwx5r63hhcbmd"; depends=[]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.2-3"; sha256="1gs0x3wj3hj663m6kszwhy3ibcx0lrslr127miy1rhz8683ij71c"; depends=[]; }; SpatialPosition = derive2 { name="SpatialPosition"; version="1.1.1"; sha256="1fbch16qmp8xnlkl7crydn1rh5gj49zlii6c9va5l7zp5wf8cl87"; depends=[raster rgdal rgeos sp]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.2"; sha256="0n8l4k0dm9gwirhxwrajv5gx502px9qzlqi6skzx0k32hmymnazh"; depends=[Rcpp RcppArmadillo spBayes]; }; - SpatialVx = derive2 { name="SpatialVx"; version="0.6"; sha256="1zjjdhfancjliz0pa0rdfbf26wdci1v3krb42bd99kb4crrk9291"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; + SpatialVx = derive2 { name="SpatialVx"; version="0.6-1"; sha256="1yscz5w6ydh87qh4ncgn6br49pzg08nqgx95m5bmydqx2r74h9jg"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[MASS Matrix]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.2"; sha256="1hwlyjpgzf2wgigbc49xcqhf6rzrjzkbriwa4i9gwpa0bnrs4wp1"; depends=[gsubfn splancs]; }; SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; - SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-0"; sha256="02mwl7kv784wdf3v6f15vbjd8sa1mh8ms11k19bjj3qci9xnx4jw"; depends=[Rcpp RcppArmadillo]; }; + SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-1"; sha256="18l2dpyks6vay4vh24jmv81br9fblhm0rb1m6jpfj1qzpa974010"; depends=[Rcpp RcppArmadillo]; }; SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; }; SpherWave = derive2 { name="SpherWave"; version="1.2.2"; sha256="1wd9pql97m1zl0axzpkfq9sxadrm5cfax0gxh0ncqadaq7w7lml4"; depends=[fields]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.3"; sha256="195is72nj1vbhdx3yqmklmc9hqaaxvipgmcxszgvnqdv5bsiypgw"; depends=[abind cubature mvmesh SimplicialCubature]; }; @@ -3059,6 +3077,7 @@ in with self; { SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; SubVis = derive2 { name="SubVis"; version="2.0.1"; sha256="1r9i27hx8xj8f3mhbm8ygcxwpq1lzxm26vay5mqk4q9swskg1vbh"; depends=[Biostrings shiny]; }; + SubgrpID = derive2 { name="SubgrpID"; version="0.10"; sha256="1gvlvsvc9v20l24zxy9i57bzj1gjplzk14fpjrhallsnp23h8zn5"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; @@ -3085,10 +3104,11 @@ in with self; { SynergizeR = derive2 { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RCurl RJSONIO]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; - TAM = derive2 { name="TAM"; version="1.99993-0"; sha256="1n5xs7s1rkn4y0317pkzg1dwdf7r5fm8wkaf0d3jvrz80g6cqbin"; depends=[CDM GPArotation lattice lavaan MASS msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; }; + TAM = derive2 { name="TAM"; version="1.99999-31"; sha256="0h2545b7hc417g5k9g482gk74mz15d0vqxviw60fqizxinxghlwv"; depends=[CDM GPArotation lattice lavaan MASS msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; }; TANDEM = derive2 { name="TANDEM"; version="1.0.0"; sha256="1zrx5zbfz0zrw46iziqnb11m75ri75dw1x88fd2dhw22am3q2940"; depends=[glmnet Matrix]; }; TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; TAQMNGR = derive2 { name="TAQMNGR"; version="2016.12-1"; sha256="1b3v30zi6ssac866grhgki2bpzbk06pd8vrfya3zcc5anry699bm"; depends=[Rcpp]; }; + TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TCGA2STAT = derive2 { name="TCGA2STAT"; version="1.2"; sha256="15a5lh0nrdcxdwj7wj5m9rsvk1ygpp6wdjb4swilk91rb1lblikv"; depends=[CNTools XML]; }; @@ -3206,7 +3226,7 @@ in with self; { TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; }; TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="0.1"; sha256="1477zp8jzq1p22q8484vkrdx5nxwq4i44mxg4zhj9fixiw4shpx9"; depends=[ape]; }; TraMineR = derive2 { name="TraMineR"; version="1.8-13"; sha256="058fj2jkr9hzpigmawzfv20c7dzdf70lwwxng46x0b1r34pdgrfr"; depends=[boot Hmisc RColorBrewer]; }; - TraMineRextras = derive2 { name="TraMineRextras"; version="0.2.5"; sha256="198yvnvw8yq321p2cdan1s47dy9vy4yxhqsnlp391lzykvan1qpc"; depends=[cluster combinat RColorBrewer survival TraMineR]; }; + TraMineRextras = derive2 { name="TraMineRextras"; version="0.2.6"; sha256="1ih2d02p8dnpcvsxqqi6mcnac36i93g4fkq1pdpl7p2i1hl15hyr"; depends=[cluster combinat RColorBrewer survival TraMineR]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; }; Trading = derive2 { name="Trading"; version="1.1"; sha256="1mzqck9n14xp16vflx1sx8lry0wjmx37hqv76ldj21xnk5zbrgil"; depends=[]; }; Traitspace = derive2 { name="Traitspace"; version="1.1"; sha256="1wlrpnzb39vgkqy0ynbwlgrkkqgklrk6pw7f8p7p2i132qk2c291"; depends=[mclust permute]; }; @@ -3222,7 +3242,7 @@ in with self; { TriMatch = derive2 { name="TriMatch"; version="0.9.7"; sha256="06idgh9bwwbwa16hlc2kgm06n9shzm0825f7k65zpz3isq23dp7q"; depends=[ez ggplot2 gridExtra PSAgraphics psych reshape2 scales]; }; TrialSize = derive2 { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; - TropFishR = derive2 { name="TropFishR"; version="1.0.2"; sha256="0rkgjx3nnjyy46fbn4szvbsiz8awf6238h7br9kjwc06aaj935dp"; depends=[beepr doParallel GA GenSA MASS msm propagate reshape2]; }; + TropFishR = derive2 { name="TropFishR"; version="1.1"; sha256="0iv7v2wl899mw4c9nwgn530spc9vz0klhbrkc9ssazzrpxn3lq21"; depends=[beepr doParallel GA GenSA MASS msm propagate reshape2]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="1.0"; sha256="1qj18xcq58xah1niwxgqqzscl7dfgxh2s8fdbzk1vigwwm5xfvij"; depends=[randtoolbox]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.1-5"; sha256="08s9scsd2l6wavc7qqlffjbf89vkd6xpb4iawvbqf7jh8jiyvw17"; depends=[]; }; @@ -3311,6 +3331,7 @@ in with self; { WMCapacity = derive2 { name="WMCapacity"; version="0.9.6.7"; sha256="167wx759xi7rv74n6sdsdkjnfpxdsiybk4ik70psdgfwdqqcga1y"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; + WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WRS2 = derive2 { name="WRS2"; version="0.9-1"; sha256="0w7qnqf289p5jnfr9l83bcplxg1rvbhc90iz7wwnphx7246nkdvv"; depends=[MASS mc2d plyr reshape]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.0.1"; sha256="14xi1wksyj07nch678dd4rbaa3q1in4nbsarv5bijl2b11dhfi7j"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate quantreg RColorBrewer survival tidyr]; }; WVPlots = derive2 { name="WVPlots"; version="0.2.2"; sha256="11zbmsq2nbvb9m7wkybwcmk1lj6n8w1v355qwsp41j9pd7r3ccw8"; depends=[ggplot2 gridExtra mgcv replyr reshape2 sigr wrapr]; }; @@ -3322,12 +3343,13 @@ in with self; { WaveLetLongMemory = derive2 { name="WaveLetLongMemory"; version="0.1.0"; sha256="1qfh5ca8389b3zimqfrlhjyzkrvvj3dixhbab1a0wrnbcc55dcq1"; depends=[fracdiff wmtsa]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.0"; sha256="16ghxqjbv39pmgd52im6ilkkh0hpnaw8ns0hwkngpbr479m1grdp"; depends=[]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; + WebGestaltR = derive2 { name="WebGestaltR"; version="0.0.5"; sha256="17h7gq14mnwfjgiyf8gwvy7z60rwd13bqgbx6pkxqf95j48k0bsg"; depends=[data_table doParallel foreach pkgmaker rjson rPython]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.2"; sha256="1d0df284fzfa34fi7b3d7f4zzm9ppyah46rj865446l5pjvl9np3"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-6"; sha256="02lqvirnf24jn8b2s08z5fjmpilp2z08lww1s793n3pn783adbky"; depends=[lpSolve]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="1.1.1"; sha256="1naavgkvgky3lzg5vlz11g589cxr0fgiqz2waz86da1ksk4a19gw"; depends=[mgcv oro_nifti]; }; - WhopGenome = derive2 { name="WhopGenome"; version="0.9.4"; sha256="085jzpgd1wgbsj68n5cixq6q4hw2sz485d9lpmch9qakhbpm7849"; depends=[]; }; + WhopGenome = derive2 { name="WhopGenome"; version="0.9.6"; sha256="038bg8c3y9h5hbkicikdqcjli5cf1bpmsc021zi00bgsk8z4i1iq"; depends=[]; }; WiSEBoot = derive2 { name="WiSEBoot"; version="1.4.0"; sha256="1fch78884ay7m2gy602k8df78gkvjiwzkjk550w0k4xbv430ld0h"; depends=[FAdist wavethresh]; }; WikiSocio = derive2 { name="WikiSocio"; version="0.7.0"; sha256="1rc90cidc8mj8x7vw82vx41ivwnmil3cmc1whc8ghxrwli256w32"; depends=[httr igraph pbapply plyr RCurl stringr XML]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="0.1.0"; sha256="17vnfarnqf5cqdldgwg505vcj2l0hji409zdyncks7xcq8myvswz"; depends=[dplyr httr jsonlite]; }; @@ -3364,8 +3386,8 @@ in with self; { ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZeBook = derive2 { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[deSolve triangle]; }; - Zelig = derive2 { name="Zelig"; version="5.0-15"; sha256="1a55v03znczpbwlxd70dy73lzq75ifmqfkhwmwn7vdz8pdcsmiqx"; depends=[AER Amelia coda dplyr geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; - ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-3"; sha256="0wh10mzasl2mzn0afas2k9dqjsmdgnbjci9i9s1fqxgdil0jp09q"; depends=[dplyr jsonlite MASS VGAM Zelig]; }; + Zelig = derive2 { name="Zelig"; version="5.0-16"; sha256="1myj1a6y69rmjrgaax2n26qa7cprclszg1s9xdzw6s6kqaw5b969"; depends=[AER Amelia coda dplyr geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; + ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-4"; sha256="02wbgzrp0jxkzz1bj5s6zk6m0w7l26jncml91mwhb2w5hzhjnbaj"; depends=[dplyr jsonlite MASS VGAM Zelig]; }; ZeligEI = derive2 { name="ZeligEI"; version="0.1-0"; sha256="1vkni4p1b0aq63l4nqg16f6a28c6ccm8nyg67z45x0yfq7xgcsi6"; depends=[dplyr ei eiPack jsonlite MASS MCMCpack Zelig]; }; ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; @@ -3442,7 +3464,6 @@ in with self; { adwave = derive2 { name="adwave"; version="1.1"; sha256="0kkwgcyxddzmrb8h1w1f4xy2cq40b86q0lxwfdhx25z3zjc4m1ni"; depends=[waveslim]; }; aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; }; afex = derive2 { name="afex"; version="0.16-1"; sha256="0y0q7lbdraw8sn4l9qazvdawqpsyjzhfzddp9gii8w72a69s90dq"; depends=[car coin lme4 lsmeans Matrix pbkrtest reshape2 stringr]; }; - after = derive2 { name="after"; version="1.0.0"; sha256="0r0cdb0jspqi5vmaighwwqc0636wc5m297nq1j3n84w7z2aglg2w"; depends=[]; }; aftgee = derive2 { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; }; agRee = derive2 { name="agRee"; version="0.5-0"; sha256="16ijw02x5qvc8rppf0yn35aljd35alnvjkjyi6725nywjib2xy5x"; depends=[coda lme4 miscF R2jags]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; @@ -3511,7 +3532,7 @@ in with self; { aop = derive2 { name="aop"; version="1.0.0"; sha256="1i3mixiwcvqygbcvj6f9vm223plmydzmixpy6nhis2zv9d90vakd"; depends=[ggplot2 graph igraph plyr Rgraphviz rjson]; }; aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.4-5"; sha256="0mvnjchhfbpbnrgnplb6qxa7r2kkvw29gqiprwggkf553wi6zl48"; depends=[ape quantreg]; }; - apa = derive2 { name="apa"; version="0.1.0"; sha256="1a5xhybx43xgwf68fkxrqwj6azj70jpsrp2fwi1m7gvn4klcv3wh"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; + apa = derive2 { name="apa"; version="0.2.0"; sha256="1f9c8m5z8j7mbmbh61vcs680ya1zq5spwqs90zhajaw5fhvlg8km"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; apaStyle = derive2 { name="apaStyle"; version="0.4"; sha256="0ckxp37p1aizvs5sql54xvpimhq4m4944x18ihqffhpzb3dxw1ba"; depends=[ReporteRs]; }; apaTables = derive2 { name="apaTables"; version="1.0.4"; sha256="1ncs79n0jvr6m9gmaazi5d9g2c6c6hf8alrb45z8fy8sj9bj51hn"; depends=[car MBESS rockchalk]; }; apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; @@ -3536,7 +3557,7 @@ in with self; { aqp = derive2 { name="aqp"; version="1.10"; sha256="1c8vj10mygsrlixx4pwfs1xk69bvhdi37hl4p1v6g3nwvsr8f7ac"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; - arc = derive2 { name="arc"; version="1.0"; sha256="1arms8crr198i4niq1wvp8ig474hlgjx63q0m96f8w6fsz63knqy"; depends=[arules discretization Matrix R_utils]; }; + arc = derive2 { name="arc"; version="1.1"; sha256="1ms0ibvsdjqgdramd4nxy5dcnw019yfpd5xryjficmkfxs6jl9pf"; depends=[arules discretization Matrix R_utils]; }; archdata = derive2 { name="archdata"; version="1.1"; sha256="07ca51kl5imy6d9s0qi501xxl3zn4q3gbm0w8kvznfw8imclq17z"; depends=[]; }; archetypes = derive2 { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="1.4"; sha256="1ymk56w07jj51p2r4g7qa4a3nyhnjrbn6igxgn6644mm0v118b8h"; depends=[XML]; }; @@ -3618,16 +3639,18 @@ in with self; { attrCUSUM = derive2 { name="attrCUSUM"; version="0.1.0"; sha256="113y40v9hyvnvvzvyqg81n0n1h84pj4zph5q8p0vc0384hw00544"; depends=[Rcpp RcppArmadillo]; }; attribrisk = derive2 { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; }; auRoc = derive2 { name="auRoc"; version="0.1-0"; sha256="1ijk127p6g5mzc7b4b9lnjnfzvklz3g8w6bckrdahlw7djd9mgz1"; depends=[coda MBESS ProbYX rjags]; }; - aucm = derive2 { name="aucm"; version="2016.1-2"; sha256="1nyxxyivs6inq8r18x7fl3zkpn75sczwnbzsv672nzdlqj5d2b5f"; depends=[kyotil]; }; + aucm = derive2 { name="aucm"; version="2017.3-2"; sha256="124rb1lhssvmlzkzb5h6hc5plv0hk7wkid53cbd28nxx1grp2wwm"; depends=[kyotil]; }; audio = derive2 { name="audio"; version="0.1-5"; sha256="1hv4052n2r6jkzkilhkfsk4dj1xhbgk4bhba2ca9nf8ag92jkqml"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; autoSEM = derive2 { name="autoSEM"; version="0.1.0"; sha256="0s58dnpr7zyclk5vwaf7a2id6paqsnb224f0gpmj2nms4klsw323"; depends=[GA lavaan snowfall]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; - autoimage = derive2 { name="autoimage"; version="1.1"; sha256="0yi6n60b72qw20bp2hchxn653c3a9x2yvgawkqs31xbkq0s50rbc"; depends=[fields ggplot2 mapproj maps viridis]; }; + autoimage = derive2 { name="autoimage"; version="1.2"; sha256="1dzxdz7wpmhl5p1jcab2i7k9fd7idm3dflsyj8clpp203wr4kz56"; depends=[fields ggplot2 mapproj maps viridis]; }; + automagic = derive2 { name="automagic"; version="0.3"; sha256="0yzv0ianfq217jvz7rba86bcmxh09p513khvq6jk5k7isblvn0qd"; depends=[devtools dplyr formatR githubinstall knitr magrittr pacman purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; automultinomial = derive2 { name="automultinomial"; version="1.0.0"; sha256="15cxnqaai2dln6jvk7lpfqvlpv5237zn18axp459p5zxcgg0lw88"; depends=[Hmisc igraph MASS Matrix]; }; autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; + autothresholdr = derive2 { name="autothresholdr"; version="0.2.0"; sha256="18a41nrh5ll1i4gqh58iwbyg8wl9w4969mx24knldaf6c303c8ss"; depends=[EBImage magrittr rJava RSAGA]; }; autovarCore = derive2 { name="autovarCore"; version="1.0-0"; sha256="08h51bh1m3d47nprd5z7v3k3lkrixbxwinr73zd5442wskf4x82v"; depends=[Amelia jsonlite Rcpp urca vars]; }; averisk = derive2 { name="averisk"; version="1.0.2"; sha256="0k7f0l7bx76q5x8cam2z0q6akc9a6zj0pj0644v8gbr40n2y5snz"; depends=[MASS]; }; aws = derive2 { name="aws"; version="1.9-6"; sha256="0mfq44pji0p6d7s1wbwi0f97lsh3f33wnj8fiyimpg9fv8lr4inz"; depends=[awsMethods gsl]; }; @@ -3670,7 +3693,7 @@ in with self; { base64 = derive2 { name="base64"; version="2.0"; sha256="1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.1"; sha256="1f0asnf5ri55q6mhjkv7lfhr2hncs65vrykmr80r5sxsha6bqndz"; depends=[backports]; }; - basefun = derive2 { name="basefun"; version="0.0-35"; sha256="12sakwz9g3w0w4di2i0l12nk5lmdniqhiq2nvmzbdy3vs4n06m3i"; depends=[Matrix orthopolynom polynom variables]; }; + basefun = derive2 { name="basefun"; version="0.0-36"; sha256="1y2pvs5gffifvchyqahsnqg6zw00yargajvryrb96labh9c5dqyl"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; }; basicspace = derive2 { name="basicspace"; version="0.18"; sha256="1jnylqaxgmdj9ld9q7hkmi4af8yzswaqgykbw96qzzxp9cvini1y"; depends=[]; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; }; @@ -3748,7 +3771,8 @@ in with self; { bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; ber = derive2 { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; berryFunctions = derive2 { name="berryFunctions"; version="1.14.0"; sha256="16332811v3ivddklif5n3mwjp02c2hzysbj4vc6z6v6sxd1jvjq2"; depends=[abind]; }; - bestglm = derive2 { name="bestglm"; version="0.35"; sha256="047gb82hgivgafx5b267gpgq9y11m74rag5j05rprmv9nz43hdqj"; depends=[lattice leaps]; }; + bestglm = derive2 { name="bestglm"; version="0.36"; sha256="1das1qnczgw46hrjplfhw00wqjd8gxqsdr9s4zmc3k8qlzhb3ych"; depends=[glmnet grpreg lattice leaps]; }; + betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; betapart = derive2 { name="betapart"; version="1.4-1"; sha256="1ldz6hr08vsgvz0h9ilsm5ab5fyppjpnz215lhri80x7biym3c0q"; depends=[ape geometry picante rcdd]; }; @@ -3766,7 +3790,7 @@ in with self; { bgeva = derive2 { name="bgeva"; version="0.3"; sha256="0isijl43kmg4x7mdnvz0lrxr87f68dl4jx7gmlg70m8r6kk8cfqn"; depends=[magic mgcv trust]; }; bglm = derive2 { name="bglm"; version="1.0"; sha256="1ln5clsfhpzjkm6cjil0lfqg687b0xxbvw1hcvangc0c0s314mrz"; depends=[mvtnorm]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; - bgmm = derive2 { name="bgmm"; version="1.7"; sha256="00bjwmgqvz053yczvllf1nxy1g88fgwrrzhnw309f2yjr1qvjbgg"; depends=[car combinat lattice mvtnorm]; }; + bgmm = derive2 { name="bgmm"; version="1.8.3"; sha256="09hsqjjyzlpl0fqb7832j5ydrr0yc42zb1c9q1y5hbrms7yp00p8"; depends=[car combinat lattice mvtnorm]; }; bgsmtr = derive2 { name="bgsmtr"; version="0.1"; sha256="09h118msqf9yl2z7d6dsvgn4vrvy43ynznajj58k7gkxdlm1nimg"; depends=[coda EDISON Matrix mnormt mvtnorm sparseMVN statmod]; }; bhm = derive2 { name="bhm"; version="1.1"; sha256="00xnqppq95qvdbiklsz4af4f0f4p61b7c7v0l1k1isxqr3mgcgia"; depends=[coda survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; @@ -3776,7 +3800,7 @@ in with self; { bibtex = derive2 { name="bibtex"; version="0.4.0"; sha256="0sy1czwjff3kdfnmlkp036qlnw8dzdl5al7izy1cc0535hsijv0d"; depends=[]; }; biclust = derive2 { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[colorspace flexclust lattice MASS]; }; bifactorial = derive2 { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[lattice multcomp mvtnorm Rcpp]; }; - bife = derive2 { name="bife"; version="0.1"; sha256="09pv4xll609y4nfgalssyfgqd8c74zc75bbyq4d8h94yyhw1d8d0"; depends=[Formula Rcpp RcppArmadillo]; }; + bife = derive2 { name="bife"; version="0.2"; sha256="00hfnd916aya48dn9n27igljav5v9xmac3bj5mhv9vggyccrim48"; depends=[Formula Rcpp RcppArmadillo]; }; bigFastlm = derive2 { name="bigFastlm"; version="0.0.1"; sha256="00i5hq3i837hj5kszm9rqax86g273aklxwikrabzwnyai9ziz8qa"; depends=[BH bigmemory Rcpp RcppEigen]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.2.0"; sha256="1z9a725jd9nparid0df7fyvsa5mvz92krj0q7mq75x6cprr44f29"; depends=[googleAuthR googleCloudStorageR]; }; @@ -3826,7 +3850,7 @@ in with self; { bio_infer = derive2 { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; }; bio3d = derive2 { name="bio3d"; version="2.3-1"; sha256="0dm582jam4ll5q82vfxf1gjrmv1qzl60kws6vmxjx91d5jwf1fqy"; depends=[Rcpp]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; - biogas = derive2 { name="biogas"; version="1.6.0"; sha256="100593ddrsl82hhpq289vs0gdasrm9fmwf6vhd530rp8k7y07j4a"; depends=[]; }; + biogas = derive2 { name="biogas"; version="1.7.0"; sha256="1c0w78x2jjgsxffcz61lfs5m72kkds55c73z970nbxvhqk8n15j6"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogram = derive2 { name="biogram"; version="1.4"; sha256="1kkim6dxmvvpby2ir280adl14jmrz7nsib3m8g2ki81d539km6il"; depends=[bit combinat entropy partitions slam]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.0"; sha256="0ws99rx7bhqi448qqy08jsl3c4vbq96gigqb85yv1mzrc82sg62p"; depends=[EBImage httr tiff]; }; @@ -3858,7 +3882,7 @@ in with self; { bizdays = derive2 { name="bizdays"; version="1.0.1"; sha256="1nig6nfxw7vrvq20p49l2b5z8cnjihljivir3lgj99djb5w8i6lk"; depends=[]; }; bkmr = derive2 { name="bkmr"; version="0.1.0"; sha256="0pw82sd8x82nk5c5c6lr7yqr767nrkgk1rvbpwy5vwdpvwwj5ibl"; depends=[dplyr fields magrittr MASS nlme tidyr truncnorm]; }; blackbox = derive2 { name="blackbox"; version="1.0.18"; sha256="1sgq6i8p066li9lr3241zplygv7yc7mp7k13c6nih0289v3l7jg7"; depends=[geometry lattice MASS nloptr numDeriv proxy rcdd Rcpp RcppEigen spaMM]; }; - blavaan = derive2 { name="blavaan"; version="0.2-2"; sha256="1jiicy21zhrnk04b74nxs4yp3g0mzcxxb6zn5wks12b1791ykrm6"; depends=[coda lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; + blavaan = derive2 { name="blavaan"; version="0.2-3"; sha256="1hbcvjgkf0hcajg12dmf0zpyf4nhp938gbqk511vz1033iaamha2"; depends=[coda lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blighty = derive2 { name="blighty"; version="3.1-4"; sha256="1fkz3vfcnciy6rfybddcp5j744dcsdpmf7cln2jky0krag8pjzpn"; depends=[]; }; @@ -3869,7 +3893,7 @@ in with self; { blmeco = derive2 { name="blmeco"; version="1.1"; sha256="1hzg5dimzj1khygm9dv0y30mx1nf9vdhgicqdg1rvj7nf426h2ki"; depends=[arm lme4 MASS MuMIn]; }; blob = derive2 { name="blob"; version="1.0.0"; sha256="0zjb3sbx4q36d69p2164im1nvpsdjz5mqa5rmncjziipgz6aix38"; depends=[tibble]; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; }; - blockcluster = derive2 { name="blockcluster"; version="4.2.1"; sha256="05fy6l0q0q0jmvyfph3wmlkniz4njkrzmhyy14hamzsiwn23cpiw"; depends=[Rcpp rtkore]; }; + blockcluster = derive2 { name="blockcluster"; version="4.2.3"; sha256="1b3rqpg3i5bplz85lxfspb1vv8l7qsxwkalnn0h5pwy9ppqdbcb7"; depends=[Rcpp rtkore]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; blockmodeling = derive2 { name="blockmodeling"; version="0.1.8"; sha256="0x71w1kysj9x6v6vsirq0nndsf6f3wzkf8pbsq3x68sf4cdji1xl"; depends=[]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; @@ -3913,7 +3937,7 @@ in with self; { bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.0.3"; sha256="0jkpci97chbvlfkcbbj3gm2dnj5aiwfrh739kd4fa0zra4ac1adh"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; - bootstrap = derive2 { name="bootstrap"; version="2015.2"; sha256="1h068az4sz49ysb0wcas1hfj7jkn13zdmk087scqj5iyqzr459xf"; depends=[]; }; + bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; boral = derive2 { name="boral"; version="1.2"; sha256="1xd9g3ll6ax363ip0wh5zpk8yw23pcv4wxlm2xxshmxyx0k9gqfk"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; @@ -3945,7 +3969,7 @@ in with self; { bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; briskaR = derive2 { name="briskaR"; version="0.1.0"; sha256="0fx254pc250jv53kmd6miw8blcp43c72myah9g5ns2s84pcdmx6h"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; }; - brms = derive2 { name="brms"; version="1.5.0"; sha256="1rjrf88wfbq1zzyxkrrajis6mrsv3zi4kdf7y8992bwfx53pwpph"; depends=[abind bayesplot coda evd ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools RWiener shinystan statmod]; }; + brms = derive2 { name="brms"; version="1.5.1"; sha256="1qh72qfkpg2226ckjraca9lc5waaajnmv729w52c04b2vmxzsr0x"; depends=[abind bayesplot coda ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools RWiener shinystan]; }; brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; }; broman = derive2 { name="broman"; version="0.65-1"; sha256="1zfcrkky4a71zq4mgnc0xcy0m8c9srwq850s97qry9a69f6j5c42"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; broom = derive2 { name="broom"; version="0.4.2"; sha256="0i2s3jbi0v5xhbqkmms4f17i3x9s6lan4bj521qmxwiwc89r8h4z"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; @@ -4031,7 +4055,7 @@ in with self; { cate = derive2 { name="cate"; version="1.0.4"; sha256="0qck6675xm5xbw440m1b6n38wjwk7izx3s0zpxbmhc9wh12c5prk"; depends=[corpcor esaBcv leapp MASS ruv sva]; }; catenary = derive2 { name="catenary"; version="1.1.1"; sha256="0gd46zvd51xvra0d7k7qdcmfl71vcfk750lcafkhmr4cg0vkqcz7"; depends=[boot ggplot2]; }; cati = derive2 { name="cati"; version="0.99.1"; sha256="0sg6qagv1wiygylgygjfn7v4n99ifaaa34qvaspmm9b4fyfcxqa5"; depends=[ade4 ape e1071 FD geometry hypervolume mice nlme rasterVis vegan]; }; - catlearn = derive2 { name="catlearn"; version="0.3"; sha256="1bqcv58g4111yjschzdikb130as4wv08pxppzwpjh4k2pg929jmk"; depends=[Rcpp]; }; + catlearn = derive2 { name="catlearn"; version="0.4"; sha256="1bpmvbpa6qab40ajmy64hg6f3zh3yifqj0rfqyk0b9f9jpdqxz9h"; depends=[Rcpp]; }; catnet = derive2 { name="catnet"; version="1.15.0"; sha256="0z2ps2wb33hc0dg08v70gvpy2zibr6kqjjv90g07hkmrhp6zjk5n"; depends=[]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; @@ -4042,6 +4066,7 @@ in with self; { cbsodataR = derive2 { name="cbsodataR"; version="0.2.1"; sha256="0nsg0fzaqhzv8r2lwz5xlybwgv25c0a2hid91ky95yaqvnjrp6mq"; depends=[jsonlite whisker yaml]; }; ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; ccaPP = derive2 { name="ccaPP"; version="0.3.2"; sha256="166spwqsqbp42mr1acglydlxspcpn8vhnim8r3s9m81sa9pmazpj"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; }; + ccafs = derive2 { name="ccafs"; version="0.1.0"; sha256="1bb1127mfpz6s2hs43msjcxk56bsk6vhxznpnv0fb21r8xnx0g7m"; depends=[crul data_table httr jsonlite rappdirs raster tibble xml2]; }; cccd = derive2 { name="cccd"; version="1.5"; sha256="0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i"; depends=[deldir FNN igraph proxy]; }; cccp = derive2 { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; @@ -4185,7 +4210,7 @@ in with self; { clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; clustrd = derive2 { name="clustrd"; version="1.1.0"; sha256="0l1mllgqqlkywhhp1a24hlvsiwkk26k58c9rg9m5pagb623w73p4"; depends=[cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; - clustvarsel = derive2 { name="clustvarsel"; version="2.2"; sha256="1b38y9zn4xbiddm5m5ki307i5yih2nadhnpnsizz91jkcqdnjhw1"; depends=[BMA foreach iterators mclust]; }; + clustvarsel = derive2 { name="clustvarsel"; version="2.3"; sha256="1f7qyffm4jrlg4bh3mg550igs7wib8y9pksx0h6gn0n9pkv1s8rc"; depends=[BMA foreach iterators Matrix mclust]; }; clv = derive2 { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[class cluster]; }; cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; @@ -4213,7 +4238,7 @@ in with self; { codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; codep = derive2 { name="codep"; version="0.6-5"; sha256="18da81wja7z9gnn11xiwi7cg43mrj4w2kjkk8s780krbycnfsn5p"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; }; - codingMatrices = derive2 { name="codingMatrices"; version="0.2.1"; sha256="00kvvsz1l603v36clsz7jm1yiwl07vcyhv4ghy0pjlz8hcfaqmna"; depends=[fractional Matrix]; }; + codingMatrices = derive2 { name="codingMatrices"; version="0.2.2"; sha256="1x1h5jdnfx6l8ry7nmn3f1qyzv96vf8axzjxcxqrlylh6z1zc068"; depends=[fractional Matrix]; }; codyn = derive2 { name="codyn"; version="1.1.0"; sha256="0s8ssaq59vddilz0fin9sgr8fir70c220cffbsy2l0qn34q48627"; depends=[assertthat permute]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.4"; sha256="0phpz4fvvxvpaybp4q1s69qxcpdzj8qxambivncps101mz7jj3sq"; depends=[ggplot2 plyr reshape2 useful]; }; @@ -4251,7 +4276,7 @@ in with self; { comf = derive2 { name="comf"; version="0.1.6"; sha256="1dfba8i08gc319ybqhfs96wa2mp0ndh4rrkv9i432gc56p4kgapr"; depends=[plyr]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; - commonmark = derive2 { name="commonmark"; version="1.1"; sha256="0dh56cspy8wkvbz0602vp050qxd70wm063lqflfk2zddcrv9lhc2"; depends=[]; }; + commonmark = derive2 { name="commonmark"; version="1.2"; sha256="12q5mncxvkwdxc35is6y5idx8a1h99hyz5x6ri0arni6k25krchk"; depends=[]; }; compHclust = derive2 { name="compHclust"; version="1.0-2"; sha256="1h39krvz516xwsvn5987i1zbzan8vx2411qz6dad112hpss0vyk9"; depends=[]; }; compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; @@ -4312,7 +4337,7 @@ in with self; { cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; }; coop = derive2 { name="coop"; version="0.6-0"; sha256="1q38kawck0625fyxmh7a0cya5yyhv9ds53q1l0h03vrappq5amxv"; depends=[]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; - copBasic = derive2 { name="copBasic"; version="2.0.4"; sha256="0vc1rk0njcmd501jpsrpgqzrcqyplnycfaidn9qwns84cswx0hxs"; depends=[lmomco randtoolbox]; }; + copBasic = derive2 { name="copBasic"; version="2.0.5"; sha256="0xijw9abqkljacwnblyncjkpaj178s9kq8jazxb39v4qk8pmvq6c"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-1"; sha256="1mvbarzq409lkf7sd6s4adf2cgvmby7f1yg35x83bp1sc8529kz8"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; }; @@ -4372,6 +4397,7 @@ in with self; { cplexAPI = derive2 { name="cplexAPI"; version="1.3.3"; sha256="1li5sbakkq8hrgwsa4i1qa5bdjj6vm6s9sq23ccknbb8bxp4zmwv"; depends=[]; }; cplm = derive2 { name="cplm"; version="0.7-5"; sha256="16li79x2zyydi7gi4n8k09g9x2n1dgd9av3nqjnb0by3v31c44n0"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.2"; sha256="1n1iqhalp99mbh8jha0pv759fb97sqxdiiq9bxy3wm6aqmssvdb1"; depends=[]; }; + cpt = derive2 { name="cpt"; version="0.9"; sha256="03nvxkwwvqmzpphax4zfij6jvh26x4bsl3mn2xr4mbr7cjb2x12w"; depends=[MASS nnet randomForest]; }; cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="1.3"; sha256="1r6g3yp3vvm8d5351lan4im1bmir38d4l9cf8bw0ay7as33ny3x9"; depends=[MASS plm]; }; crackR = derive2 { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[evd Hmisc]; }; @@ -4394,6 +4420,7 @@ in with self; { crmn = derive2 { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; + cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; crossdes = derive2 { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; @@ -4409,7 +4436,7 @@ in with self; { crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="0.3.0"; sha256="1a59zb2ifxg59yzjyf1gq4fk0vqvc0alvifpn2rssis8jyr6g7wr"; depends=[curl httpcode mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.14.4"; sha256="11pj3pbb9hs7bwdmgr10jlir95rq4xdn4qmyklqjls2kgh9r9sfn"; depends=[curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.15.0"; sha256="0ylkp861dy8qa03pjl6znf2mgknhnf3wfyby01zjzrwak2pixi5n"; depends=[curl httpcache httr jsonlite]; }; cruts = derive2 { name="cruts"; version="0.3"; sha256="0yn6xc2wg23nkjnsb7kii7dn897wf4ymnpmgppacrsznl8mmlmgd"; depends=[lubridate ncdf4 raster sp stringr]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; @@ -4471,7 +4498,7 @@ in with self; { cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.1"; sha256="0xx1lpp9qpkqh991ib0l9z1wn6j67jnggrhq5gr5sm63m7sjijwn"; depends=[base64enc dendextend htmlwidgets png scales]; }; - d3r = derive2 { name="d3r"; version="0.6.1"; sha256="1j69rm37j4q6dwhqprr9cmcl2x9qlmjas025kzl5fagb554dkgy8"; depends=[dplyr htmltools tidyr]; }; + d3r = derive2 { name="d3r"; version="0.6.2"; sha256="0abxv8ld6zzkajqkiz0dv61axw3yak4arpw8ar43dypg1ar5cbmm"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.0"; sha256="0b8n2kkpyqia6kpmgdi93917xf23r9aya33030iyk2wn18642qdj"; depends=[ALL Biobase genefilter MLInterfaces]; }; @@ -4545,7 +4572,7 @@ in with self; { deal = derive2 { name="deal"; version="1.2-37"; sha256="1nn2blmxz3j5yzpwfviarnmabbyivc25cbfhcf814avrhpysvpxa"; depends=[]; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; debug = derive2 { name="debug"; version="1.3.1"; sha256="0mpwi6sippxyr1l8xf48xqv6qw6pmfkxs13k1gjyd7bkzlbchgqd"; depends=[mvbutils]; }; - debugme = derive2 { name="debugme"; version="1.0.1"; sha256="14yhkvh05748jfn2dsdllflsjnjljhjm8kkzzqb7zcp6qjylwcys"; depends=[crayon]; }; + debugme = derive2 { name="debugme"; version="1.0.2"; sha256="0ayqai6a5zv8mmhv2pcj6yzlpkkhjh7fa3l4pjljgi37ma3pi38z"; depends=[crayon]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; decisionSupport = derive2 { name="decisionSupport"; version="1.101.2"; sha256="0zmf87wjrpkg12ix8dz3asrwldwvclj1ifvzff46zgipdm3viqr0"; depends=[msm mvtnorm]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; @@ -4603,7 +4630,7 @@ in with self; { detect = derive2 { name="detect"; version="0.4-0"; sha256="119kvkgpgd12v31ps1bg5dmc9djkaqzls548nlrvn1pbmahfnfx5"; depends=[Formula pbapply]; }; detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; - detzrcr = derive2 { name="detzrcr"; version="0.1.2"; sha256="0hw88kizz0kcz4i1lqz30gixiq7im91875p2wpvbnzyxhs3n04vi"; depends=[ggplot2 MASS shiny]; }; + detzrcr = derive2 { name="detzrcr"; version="0.1.3"; sha256="1j0x3175d0fllf0f4csgdi86p69ichk5wvhr5nbyzga3f034c87h"; depends=[ggplot2 MASS shiny]; }; devEMF = derive2 { name="devEMF"; version="3.3-1"; sha256="1s0rmw3gsyj28ywlkfdjr98fr7cjhmzb0fq5qn9s91dw9a3fx8zf"; depends=[]; }; devRate = derive2 { name="devRate"; version="0.1.1"; sha256="088i9m9ys59p2a961183ac2w6wa0idb4xvyfnxqz9rpiins8d0bg"; depends=[]; }; devtools = derive2 { name="devtools"; version="1.12.0"; sha256="1m5g6xnq7r4s3a0nlpa88fp5x6c8nl5icnp4869y5zwdk2ijqgla"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; @@ -4618,7 +4645,7 @@ in with self; { dfpk = derive2 { name="dfpk"; version="2.0.0"; sha256="0nn0m4kvjsyv48xribkab0jnbv0db17aan9flnkg5jh4s03pg9sc"; depends=[BH dfcrm ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; dggridR = derive2 { name="dggridR"; version="0.1.11"; sha256="179pi20rs0mp5aqydhw34wczrkyavndaaccjr017gp456gza1a83"; depends=[dplyr ggplot2 rgdal]; }; - dglars = derive2 { name="dglars"; version="1.0.5"; sha256="02g8x4p98jv3cfwfxvh68aivb72651w4977g4xqksq0p4nqcs636"; depends=[]; }; + dglars = derive2 { name="dglars"; version="2.0.0"; sha256="0nhljv02cfsna4d220nhla4fs84hr30qs9j32mml0brnmazyjj0n"; depends=[Matrix]; }; dglm = derive2 { name="dglm"; version="1.8.3"; sha256="0vj4vddqcrjzgqsi6zsxm22gj5pa5dm50wcxip4vi8kbwxaahnaj"; depends=[statmod]; }; dgmb = derive2 { name="dgmb"; version="1.2"; sha256="1r5md917wipx78n63x87fpvsc3h87c68cpacrrs9dhss199p1a5k"; depends=[abind MASS]; }; dgodata = derive2 { name="dgodata"; version="0.0.2"; sha256="03cyiig8pn7fdkrkrd29cwy5g63bp57bpl9jmdxfi03smngzbz0m"; depends=[]; }; @@ -4641,7 +4668,7 @@ in with self; { diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; diffeR = derive2 { name="diffeR"; version="0.0-4"; sha256="08g21h3yq8rm2i6ah364nfadg7hnghc21jnpi5aqwzqyd2v93b67"; depends=[ggplot2 raster rgdal]; }; diffobj = derive2 { name="diffobj"; version="0.1.6"; sha256="0f6wskh3nl8ngh195x8wiv1g0fc690r4zh4ypkraqd2c6x1iskg7"; depends=[crayon]; }; - diffr = derive2 { name="diffr"; version="0.0.1"; sha256="0lhk9vm9gp0pwzsniy49dgq9vd4c1bxf8c8w8ib4b4fg5jq3hfwj"; depends=[htmlwidgets]; }; + diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; }; diffractometry = derive2 { name="diffractometry"; version="0.1-8"; sha256="1m6cyf1kxm9xf1z4mn4iz0ggiy9wcyi8ysbgcsk7l78y7nqh1h99"; depends=[]; }; diffrprojects = derive2 { name="diffrprojects"; version="0.1.14"; sha256="1mnqf5zs1w8dx9y5iwn4blyzb9j60ayzc04zxj5l8804nd527n25"; depends=[dplyr hellno magrittr R6 Rcpp RSQLite rtext stringb stringdist]; }; diffrprojectswidget = derive2 { name="diffrprojectswidget"; version="0.1.5"; sha256="1h69mc1wayi80vz4b9cqydylf4kp9mxsigv05r0f903pqakdrzcw"; depends=[diffrprojects dplyr hellno htmlwidgets jsonlite magrittr tidyr]; }; @@ -4657,6 +4684,7 @@ in with self; { diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; }; directlabels = derive2 { name="directlabels"; version="2015.12.16"; sha256="0vi9zbc2sa8fpi2n2ax1ni9f8s9w1hc0f6gahk8fcrmnagj4g089"; depends=[quadprog]; }; + dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; discSurv = derive2 { name="discSurv"; version="1.1.5"; sha256="0lbzaalh1jack49px47sqsmpwmv14w4h1y2r9k294921d02zl0w5"; depends=[functional mgcv mvtnorm]; }; discgolf = derive2 { name="discgolf"; version="0.1.0"; sha256="15bk2k7glahcbz4kyl3fiayi7ck6z3wabl9y25fg6cnxkbyh6dbn"; depends=[httr jsonlite xml2]; }; @@ -4677,7 +4705,7 @@ in with self; { disposables = derive2 { name="disposables"; version="1.0.1"; sha256="1gmmf34hq8vm2gjg1560hkarppxmzakymgjbpzbpy2j471kd9s7a"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; }; - distcomp = derive2 { name="distcomp"; version="0.25.4"; sha256="0drh7a79nvc6l6c0q2k9hva6kpb8ik6q2aiynp8ab8pf0dh84h6d"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; + distcomp = derive2 { name="distcomp"; version="0.25.6"; sha256="0qp9lsi1mb9amcs8wfhzrsqv92lrl3k3glskmvvj75cqy5kwi3az"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; distdrawr = derive2 { name="distdrawr"; version="0.1.2"; sha256="1i1rkkic3kz2cs7fq4sb7zfr6s4wini8g1851yxzs9bjgqpsch1d"; depends=[]; }; distfree_cr = derive2 { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; distillery = derive2 { name="distillery"; version="1.0-2"; sha256="12m4cacvc18fd3aayc8iih5q6bwsmvf29b55fwp7vs8wp1h8nd8c"; depends=[]; }; @@ -4693,7 +4721,7 @@ in with self; { distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; }; distrom = derive2 { name="distrom"; version="0.3-3"; sha256="1kpbrsa7ml72zvmdcpbbz2rsv4lpqd5i2w3v488ji6nbi44v1gp6"; depends=[gamlr Matrix]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; - diveMove = derive2 { name="diveMove"; version="1.4.1"; sha256="13vgnjifvjsrhh3ns5l2gxwf80bg3a3j3n9ycblzjyjpl7i1960i"; depends=[caTools geosphere KernSmooth quantreg]; }; + diveMove = derive2 { name="diveMove"; version="1.4.2"; sha256="0j761js14ip6spxm6xz9lwyc6zv094bylp1lq487pkgwwcakqs0k"; depends=[caTools geosphere KernSmooth quantreg uniReg]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.89"; sha256="0f75dak14x9x9xs6ql9686n6w1f0w5g6h5ya983mg547f1zzbw9m"; depends=[ggplot2 qgraph Rcpp shiny]; }; diverse = derive2 { name="diverse"; version="0.1.4"; sha256="0c5a2ippnygyny9bkqk8s9vywq5207nss0ikywgji8ld0zvxsmi6"; depends=[foreign proxy reshape2]; }; diversitree = derive2 { name="diversitree"; version="0.9-9"; sha256="00dzw9fpcdgfvf7jl3lr2a2gpfd8pr17myih04v5hkxpjmsydawp"; depends=[ape deSolve Rcpp subplex]; }; @@ -4733,7 +4761,7 @@ in with self; { dosresmeta = derive2 { name="dosresmeta"; version="1.3.3"; sha256="0j0718mlzwnnxc7rm9yqm9izsa7c2kbwfx9ai2ygj3xki9wr70jm"; depends=[aod Matrix mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; dotCall64 = derive2 { name="dotCall64"; version="0.9-04"; sha256="0qp6magpp0jaa0b9sfkbxd91afayl24kj0yrh0ix1v3ahdnaar8f"; depends=[]; }; - dotenv = derive2 { name="dotenv"; version="1.0.1"; sha256="1xvzsnb6v904829lqxmypn56jkm98lw4wpcvljn8620w2wipark5"; depends=[]; }; + dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.2.3"; sha256="0q5l7vkypnh1rxlh5yd8jq4kql62wqf60gdpf7cds437w8fs8c01"; depends=[broom dplyr ggplot2 gridExtra gtable plyr stringr]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downscale = derive2 { name="downscale"; version="1.2-4"; sha256="080zlfz0yhznymr7icc2m7w5c0pqiak1qp22ywcfcb6d0mri3k8l"; depends=[cubature minpack_lm raster Rmpfr sp]; }; @@ -4749,6 +4777,7 @@ in with self; { dprep = derive2 { name="dprep"; version="3.0.2"; sha256="0iw1pqpqlv436wpwh1w832aqvy91zvxmbk2jdw7aczrb29wys2bj"; depends=[class e1071 FNN MASS nnet rgl rpart StatMatch]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; + drake = derive2 { name="drake"; version="1.0.1"; sha256="14r1qa6nf1g0gixnyx7b60xga37gic99ma7mr2fzgqa7i89bz2hc"; depends=[crayon digest eply formatR igraph magrittr plyr pryr R6 storr stringi stringr]; }; drat = derive2 { name="drat"; version="0.1.2"; sha256="14nmbxy2y51bi258fmx24pkwmga791hnwzbx6jy2sl55g3vrxjpz"; depends=[]; }; drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; @@ -4796,7 +4825,8 @@ in with self; { dynlm = derive2 { name="dynlm"; version="0.3-5"; sha256="1sjhhlvvcgmayb9dfwacv1g75c4lhbpzyczj6h7gkd19bcfbdhqp"; depends=[car lmtest zoo]; }; dynpanel = derive2 { name="dynpanel"; version="0.1.0"; sha256="073kfl5g4d7v8wd2qnpixqrxbac3cqj35z03ax2zlb8h2afa7j62"; depends=[gtools]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; - dynr = derive2 { name="dynr"; version="0.1.8-17"; sha256="1q2rag00haniv2ffp6k7kr00zy11rpksa55sp8wymcb96x8m64mw"; depends=[ggplot2 latex2exp MASS Matrix numDeriv plyr reshape2 xtable]; }; + dynr = derive2 { name="dynr"; version="0.1.9-20"; sha256="0pdlbnrxj4jzfy1ycm7k2jdwckgzdjmgkrkhak43d0bgcp1wh8qv"; depends=[ggplot2 latex2exp MASS Matrix numDeriv plyr reshape2 xtable]; }; + dynsbm = derive2 { name="dynsbm"; version="0.3"; sha256="0wgpcilqfy5jjqw5sk0jwgi5ryf4d52308fgcx133059n9i1k3rz"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.3-5"; sha256="0rvwnssg876sng53viiqfcm7mxvilpds9yahj6bwgs90chnkjz4g"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; e1071 = derive2 { name="e1071"; version="1.6-8"; sha256="08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn"; depends=[class]; }; @@ -4811,7 +4841,7 @@ in with self; { earth = derive2 { name="earth"; version="4.4.9"; sha256="1dyz2ac754scg474x9ksrwrqflmh9wi7qwgm494fpfi9ndd9ycig"; depends=[plotmo TeachingDemos]; }; earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; }; easyDes = derive2 { name="easyDes"; version="1.0"; sha256="17wjsvy9hnrp6s50ivrvahd6p147ibcn3wrlj1hx95qckqjk2b06"; depends=[multcomp PMCMR]; }; - easyPubMed = derive2 { name="easyPubMed"; version="1.7"; sha256="1gkd95ady6wqm3v89rf5k3axz3g4gv67bvr2kgci3zf3xvqzva7a"; depends=[XML]; }; + easyPubMed = derive2 { name="easyPubMed"; version="2.3"; sha256="148ga6flgv74sfzz5kvvnqhfdkx6zhpl6ydzcd32lz3cq24ckli9"; depends=[XML]; }; easySdcTable = derive2 { name="easySdcTable"; version="0.2.1"; sha256="0a7779xvsqzcsva9jxa10wz8bdbfp49r0w7c2dqwi9md04bv1qg1"; depends=[sdcTable SSBtools]; }; easyVerification = derive2 { name="easyVerification"; version="0.4.0"; sha256="0jllrrp0abqkij7iq4z5paca4lgxh4lbrj5ifhrakrxdpncrg9wd"; depends=[pbapply Rcpp SpecsVerification]; }; easyanova = derive2 { name="easyanova"; version="4.0"; sha256="1d8fkgyqzphipvla7x8ipcf0by07iqx8xran15d2q82yq9iik5g9"; depends=[car nlme]; }; @@ -4833,7 +4863,7 @@ in with self; { echogram = derive2 { name="echogram"; version="0.1.0"; sha256="0v0fiy2fflk7pxn8wqr75wym0m6snggvvgxpa2b35alpmqch9k18"; depends=[geosphere readHAC]; }; ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; - ecm = derive2 { name="ecm"; version="0.6.0"; sha256="0swkaimm1nfrnb5niiihwx5i0b5l4cg8b6bmy0aipawpgpphn1yh"; depends=[car]; }; + ecm = derive2 { name="ecm"; version="0.8.0"; sha256="0y9whfr75mc54ip1vc0zrbxsjslz86adqrqdvpbbva81c2x1b0ir"; depends=[car]; }; eco = derive2 { name="eco"; version="3.1-7"; sha256="0qrl1mq0nc42j4dzqhayzzb56gmkk479wgpxikzgzpj9wv78yd5s"; depends=[MASS]; }; ecodist = derive2 { name="ecodist"; version="1.2.9"; sha256="199f3lwwm8r2bnik595m540la1p4z6vbkwfqh9kimy9d0fjp8nps"; depends=[]; }; ecoengine = derive2 { name="ecoengine"; version="1.10.0"; sha256="0k24m03qpqbcdwsf6xawrh0x43b97w2pba3h4pcwl7j2p0ls91pi"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; @@ -4883,7 +4913,7 @@ in with self; { egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; eha = derive2 { name="eha"; version="2.4-4"; sha256="1sp1v3jmidj4ynjq7q7y28j9f483yhbzaz1jnxjc4hqk8398cxii"; depends=[survival]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; - eiCompare = derive2 { name="eiCompare"; version="1.7"; sha256="128wvfsvzf84rkvk3bnailn2k4qf5iq5r7hnrxlamajia526ky31"; depends=[cubature data_table eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils tidyr tmvtnorm ucminf]; }; + eiCompare = derive2 { name="eiCompare"; version="1.8"; sha256="12ga90nnxzy08ajgx9yavasbx5j4nrqkqinbi9w7yp4r5f27pqg8"; depends=[cubature data_table eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.01"; sha256="0p9n28x5gg46nszzd2z9ky5fhv6qa070673i1df6bhjh962aqgaf"; depends=[]; }; @@ -4972,7 +5002,7 @@ in with self; { epxToR = derive2 { name="epxToR"; version="0.1-0"; sha256="1nvm9cr12lvh877xxiyii0gbfs6r0px76f5qlpn3pdlgj59msn3s"; depends=[httr XML]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; - equSA = derive2 { name="equSA"; version="1.0.0"; sha256="1yq8f1svh8cg9pgharnb5ijxf692rm2avjvd6xabsv8jid25618l"; depends=[huge igraph mvtnorm XMRF ZIM]; }; + equSA = derive2 { name="equSA"; version="1.0.1"; sha256="0sy1wfdr9p5m8hx0wbf4kzcfxmak2q6snaasp224agammslgyqyp"; depends=[huge igraph mvtnorm XMRF ZIM]; }; equate = derive2 { name="equate"; version="2.0.6"; sha256="0fkgz4747wf2n1sfkskpbp20zdmxvykqhncr7a8wl5lp314r48x3"; depends=[]; }; equateIRT = derive2 { name="equateIRT"; version="2.0-1"; sha256="07kyy0adg42vzg26ssfwy5hiwggymbkkpvyczhzch4113lipz6pd"; depends=[mirt statmod]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; @@ -4986,7 +5016,7 @@ in with self; { ergm_rank = derive2 { name="ergm.rank"; version="1.0.1"; sha256="0k5ffqxn9fspbg82j2cmrcyav3nqjk7cnsq48xwy9i3z3vaq704k"; depends=[ergm network statnet_common]; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; - erp_easy = derive2 { name="erp.easy"; version="1.0.0"; sha256="0md4l48qb2z6c527ir1dwc51z8yw1jq7yx85fxzzg0wh1vzafp1z"; depends=[plyr signal]; }; + erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; @@ -5008,11 +5038,12 @@ in with self; { eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; eulerr = derive2 { name="eulerr"; version="1.1.0"; sha256="00pblvyfhqcvbjwjkq237b7kj99vvkyclam9mpmgrd72wx6ryzr7"; depends=[assertthat lattice latticeExtra Rcpp RcppArmadillo]; }; euroMix = derive2 { name="euroMix"; version="1.1.1"; sha256="13ia6j0iwxhcfv17b5dsq1pk7v1kxaq6njxilxq0hvd57hv0b2a8"; depends=[Familias forensim paramlink]; }; - europepmc = derive2 { name="europepmc"; version="0.1.2"; sha256="1wdxmhcq7zz0x9rrddp7pswj6pbsfdgwrrlm6lgsv7cvs6cmh1na"; depends=[dplyr httr jsonlite plyr urltools xml2]; }; - europop = derive2 { name="europop"; version="0.3"; sha256="01c31p82r1paxqq209078av9fzkvrl3wp9hz8s79iwf4hlqxbiw6"; depends=[]; }; + europepmc = derive2 { name="europepmc"; version="0.1.3"; sha256="1mjrrz8xjizxvkmzidbwxs82ijaa70l39anaba8bi7vj8l2k64bm"; depends=[dplyr httr jsonlite plyr urltools xml2]; }; + europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; eurostat = derive2 { name="eurostat"; version="2.2.43"; sha256="1h3vx0lf6kqvvhcj1ichzsvqhjmskcpvxd37hym6cwwgkkmxrzk3"; depends=[classInt httr jsonlite RColorBrewer readr sp stringi stringr tibble tidyr]; }; eva = derive2 { name="eva"; version="0.2.4"; sha256="03jsiz6bkavwxpgllxaw8czahmm2rh5h8hhk5j7i9clcjx244vvj"; depends=[EnvStats Matrix]; }; evaluate = derive2 { name="evaluate"; version="0.10"; sha256="0mwna7rjyrmc76651a1fm7c76ippdsc2wsp3sj3iwb1c73mvlqv1"; depends=[stringr]; }; + evaluator = derive2 { name="evaluator"; version="0.1.0"; sha256="00811idj3vx7x627dyw0i8qlbkscrdkxknwph4d4j8m49flh9j36"; depends=[dplyr extrafont ggalt ggplot2 magrittr mc2d pander psych purrr readr readxl scales stringi tibble tidyr viridis]; }; evclass = derive2 { name="evclass"; version="1.1.0"; sha256="1h0lqf6wixsbcs4hnpzsjhsj8fifh9z5r90zcwscj1vk7aqf9cwg"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; }; evd = derive2 { name="evd"; version="2.3-2"; sha256="0n81plbw2p83c10y6a6hvqkxcbfqjdc41p02zyklbcafga1m4gdy"; depends=[]; }; @@ -5033,7 +5064,7 @@ in with self; { exCon = derive2 { name="exCon"; version="0.2.1"; sha256="0rblghg29azzbf8wq7wsypf9jprcy9a2063fhwn0lpxqqgbyzw8v"; depends=[jsonlite]; }; exact2x2 = derive2 { name="exact2x2"; version="1.5.2"; sha256="12m3kaxdrf4bsw7lrylk15nimhy4sgmjbnlqm684y2kyvii9yrg0"; depends=[exactci ssanv]; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; - exactRankTests = derive2 { name="exactRankTests"; version="0.8-28"; sha256="1n6rr0wax265y9w341x7m2pqwx3cv8iqx1k5qla29z8lqn4ng1nd"; depends=[]; }; + exactRankTests = derive2 { name="exactRankTests"; version="0.8-29"; sha256="0sj4bf0sab2rsgh967i5jl7ml2l1niydqmyn7c6ybai1gavsdpi1"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.3-1"; sha256="1mhigk1nzd24qhzgd1j96zlf38dr96c1y5jbmy6lz2sw7g4mmvgm"; depends=[ssanv]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; exams = derive2 { name="exams"; version="2.2-0"; sha256="14w0m8jnnpbg153l0gq5lixw68ml3qvnnjyl4dbaiccm2as9spbn"; depends=[]; }; @@ -5061,6 +5092,7 @@ in with self; { exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; extRemes = derive2 { name="extRemes"; version="2.0-8"; sha256="0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"; depends=[car distillery Lmoments]; }; extWeibQuant = derive2 { name="extWeibQuant"; version="1.1"; sha256="08dzw5xfgqx0c7ac632c5mg5jmjjw7wwpcr4c9lvz5rv72ykh2rh"; depends=[]; }; + extdplyr = derive2 { name="extdplyr"; version="0.1.4"; sha256="0rxwpspn3905f4l27cwgi9rlj379hb6b4kkb0kjq8gzpkg2fznh1"; depends=[dplyr lazyeval tidyr]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; @@ -5117,7 +5149,7 @@ in with self; { faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; - falconx = derive2 { name="falconx"; version="0.1"; sha256="0sxsvx6nppys9sgmrxi79f709kfhafckd22nmn4ql7vf7p0z1fs7"; depends=[]; }; + falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; fame = derive2 { name="fame"; version="2.21"; sha256="15pcgc67qcg6qkgssbfissicic317v60jsybp86ryqvzqg70cqx3"; depends=[tis]; }; fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.1"; sha256="1vnxn5zl1j8209dyrwq3919hivab09f0jq4v9h7v0wlqk1hy5ich"; depends=[]; }; @@ -5147,7 +5179,7 @@ in with self; { fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasteraster = derive2 { name="fasteraster"; version="1.0.4"; sha256="0xxfwgzf6xbk4sajchaz7wjppg6cs1vkb00wiwsqmjm2yr48yp0m"; depends=[Rcpp]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; - fastnet = derive2 { name="fastnet"; version="0.1.1"; sha256="1rqr9cc5xnz3pqjhakp52xk0m8c8dld50vm29blr8s6gw0spp7j8"; depends=[doParallel foreach igraph]; }; + fastnet = derive2 { name="fastnet"; version="0.1.2"; sha256="124nbvxhrx2nnyzcbr602fpay1zq9fibg1k33f2pkl8pwk87s14q"; depends=[doParallel foreach igraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.2"; sha256="1xqr4azc5gsr7kcm8qzwjpjy72w1b111i61wbm35vns9r38a6cxz"; depends=[kinship2 multgee]; }; @@ -5205,6 +5237,7 @@ in with self; { filenamer = derive2 { name="filenamer"; version="0.2.1"; sha256="0xahzjgwfpyln6i2szr985csw11w8wwk644sgclwly9l2yqzsi3i"; depends=[]; }; fileplyr = derive2 { name="fileplyr"; version="0.2.0"; sha256="15rxls0njd6j2vxdahf4fx2nxmsa3rc41812v3wlaqas99naaxxr"; depends=[assertthat datadr tibble]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; + filesstrings = derive2 { name="filesstrings"; version="0.3.1"; sha256="1vzvs43wzlivgyazinavxbhzca5ffz7a1q7hnbcl8mp1y9vnwski"; depends=[dplyr magrittr matrixStats ore Rcpp readr stringr tibble]; }; financial = derive2 { name="financial"; version="0.2"; sha256="1v6jgs3rq57byin5mynslfjk3zrx91qz36558nn17mv6z0qsf10v"; depends=[]; }; finch = derive2 { name="finch"; version="0.1.0"; sha256="0pqli6l049s9pdk0gphch1pw8i0f1fr3562akms1x7hvdkn9c0i9"; depends=[data_table digest EML plyr rappdirs xml2]; }; findpython = derive2 { name="findpython"; version="1.0.1"; sha256="0fa01znc9cckj4ay4zmwmssm2lkhmsw6h07y1pwgd6z1b2pj7bns"; depends=[]; }; @@ -5225,14 +5258,14 @@ in with self; { fitcoach = derive2 { name="fitcoach"; version="1.0"; sha256="1nnd7g093qjlbyrdai78gpbs0xjqlfdjn1v786v7966rzp83xfkg"; depends=[caret dplyr gbm ggplot2 httr jsonlite plyr R6 reshape2]; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-8"; sha256="0h6b5zp5z2g87vz1zv4k7b0rl8rh17vs2ca0i2v583v0b4si7hz4"; depends=[MASS survival]; }; - fitplc = derive2 { name="fitplc"; version="1.1-3"; sha256="1l7s5adzindq24slbygmkyk17jh37hgv1pwa7bphsb997k5qk4fm"; depends=[car nlme]; }; + fitplc = derive2 { name="fitplc"; version="1.1-7"; sha256="1dffgqsml6cj6ayqdpr0330kj8v57jwi3pgchb8v98rainygsyfw"; depends=[car nlme]; }; fitur = derive2 { name="fitur"; version="0.1.0"; sha256="1k4c6n36s324akscm0mkyw68hxmh52kh0l01kyw18mxlbr3d0rhq"; depends=[fitdistrplus]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.1.0"; sha256="0fcc8rq745nsghp27dk0lgih90y4zx8hrzcvsn6ih786yv7qxhvl"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; - flacco = derive2 { name="flacco"; version="1.3"; sha256="1kqr8a311d2kh4rgy176813vcai63qkz4x7snynj82jgmqfz2llq"; depends=[BBmisc checkmate]; }; + flacco = derive2 { name="flacco"; version="1.4"; sha256="1hfh71s1qb0v7ip1v5gibgdpqq4sa3cz22kwszj1pprlfp711vvg"; depends=[BBmisc checkmate mlr]; }; flam = derive2 { name="flam"; version="3.1"; sha256="12dkxisi56fg5720mh58jqrjvkqllqgzynafd44xalswkk4ahaak"; depends=[MASS Rcpp]; }; - flan = derive2 { name="flan"; version="0.3"; sha256="1ayba6gifxmvwn5mfh0zqgl1hbp5d9spl1bxc8w8zxvih4khw7w4"; depends=[lbfgsb3 Rcpp]; }; + flan = derive2 { name="flan"; version="0.4"; sha256="1h1i0gvq29gl0xla77vwd09vj5szrvxw2fmmzg5y2ys9lhjjjifw"; depends=[lbfgsb3 Rcpp RcppArmadillo RcppGSL]; }; flare = derive2 { name="flare"; version="1.5.0"; sha256="03bq40lwwq49vvbarf37y7c3smm29mxqfxsc66gkg8l5pak4l38i"; depends=[igraph lattice MASS Matrix]; }; flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; @@ -5266,7 +5299,9 @@ in with self; { foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; foghorn = derive2 { name="foghorn"; version="0.4.2"; sha256="0wskaky1jb9yqz0ds1hjrvdfdxdsmbfx730257z9xsyip1fwlic4"; depends=[clisymbols crayon curl dplyr httr lazyeval magrittr rvest tibble tidyr xml2]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; + fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; + fontMPlus = derive2 { name="fontMPlus"; version="0.1.1"; sha256="1hvviawbfs3m7mr46y2sjdxkksi10vpbnjic11rjaxqcy9a43f4y"; depends=[extrafont ggplot2 hrbrthemes]; }; fontcm = derive2 { name="fontcm"; version="1.1"; sha256="1z6b4qdgj5vhvjqj90sm1hp0fffi1vxzvq71p0flxybzyb7d15la"; depends=[]; }; fontquiver = derive2 { name="fontquiver"; version="0.2.1"; sha256="0qv3i9hch7cygl9983s3w68wfh5qvym2jkm52pp06p6mq8a1i1wm"; depends=[fontBitstreamVera fontLiberation]; }; foodweb = derive2 { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; }; @@ -5274,7 +5309,7 @@ in with self; { forcats = derive2 { name="forcats"; version="0.2.0"; sha256="1mvwkynvvgz2vi8dyz11x7xrp53kadjawjcja34hwk1d89qf7g5m"; depends=[magrittr tibble]; }; foreach = derive2 { name="foreach"; version="1.4.3"; sha256="10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; - forecast = derive2 { name="forecast"; version="7.3"; sha256="02zckbxwb4b83kadk7nd5ybxanswq1ws4z5xzdyiss626pgzljp1"; depends=[colorspace fracdiff ggplot2 nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; + forecast = derive2 { name="forecast"; version="8.0"; sha256="0hmdas2vybv2057d33vqqsb4w9npn15a5kqcg2rvy0m2p0c66ibm"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="0.3.0"; sha256="1j5mfmdi6ky6ssai3lv2x7n09i93hpl5r1068qlm32mijf4yylbs"; depends=[forecast ggplot2 reshape2]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.1-1"; sha256="1rmar6qfiw9hszwqp988csvwsq8q72d39a2xmr9yq36llnbg6i5p"; depends=[Rcpp]; }; forega = derive2 { name="forega"; version="1.0"; sha256="0xf9almfikfkxq8mm09lzrvav2v5cg0avpz99i6h5i9qliix1q6r"; depends=[forecast Rcpp robfilter]; }; @@ -5287,7 +5322,7 @@ in with self; { forestplot = derive2 { name="forestplot"; version="1.7"; sha256="0sxbh7chmy3aixvwks2mzzx0n6h9zkk6c4nsw3ihll213x8pph4q"; depends=[checkmate magrittr]; }; formatR = derive2 { name="formatR"; version="1.4"; sha256="1fvynq0fj1r9grg9vvfdh5fl2riv6qki9f2rfpyvbvqq3xxpmi3f"; depends=[]; }; formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; - formula_tools = derive2 { name="formula.tools"; version="1.5.4"; sha256="1qs7ls757qvh5gdkx32zslgpx1a4zk2vf8bbgjdax02jmlyp2qrp"; depends=[operator_tools]; }; + formula_tools = derive2 { name="formula.tools"; version="1.6.1"; sha256="14n89fljl5x24fka2jab41hwqmjq3a2yl02n58n1li20wrl3zagj"; depends=[operator_tools]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; }; fossil = derive2 { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; }; @@ -5299,6 +5334,7 @@ in with self; { fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; fpow = derive2 { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; fpp = derive2 { name="fpp"; version="0.5"; sha256="1jqnx6bgpvnbbj2fa2b6m6aj8jd5cb9kz877r8kp7a5qj62xv1ww"; depends=[expsmooth fma forecast lmtest tseries]; }; + fpp2 = derive2 { name="fpp2"; version="2.0"; sha256="1fpph63rzchy98v4skc396swbmmnpjmfkfidk9xs5mfibs66594b"; depends=[expsmooth fma forecast ggplot2]; }; fptdApprox = derive2 { name="fptdApprox"; version="2.1"; sha256="00vxwcwca7zfm4fr0x9898snr6j0474ci1bahjmpj2jxiclwnhzs"; depends=[]; }; fracdiff = derive2 { name="fracdiff"; version="1.4-2"; sha256="03l5dqpqwwi5c8fwc2vissfawcsignai60h2zalknkibvk782dwq"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.6"; sha256="1cpb71yk1245j6qz4mqvpqc3s3lrmav4blp5wlxasjizn3ilwh66"; depends=[emg numDeriv]; }; @@ -5346,7 +5382,7 @@ in with self; { funData = derive2 { name="funData"; version="1.0"; sha256="13f6jlw3g7glz5anlwmj7g64kia18ldm3nfj55qybjfh4b6rh7v3"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; funHDDC = derive2 { name="funHDDC"; version="1.0"; sha256="038m64yv27wz7ki2gcn94q011p8mv0ggmli5n27y0f5bnkfh6d6w"; depends=[fda]; }; - funModeling = derive2 { name="funModeling"; version="1.6"; sha256="1h0qzdx6yk10snhx6apriz3al52wqrisffqvanhpznsvk8yg3wvd"; depends=[dplyr ggplot2 gridExtra Hmisc lazyeval pander reshape2 ROCR scales]; }; + funModeling = derive2 { name="funModeling"; version="1.6.1"; sha256="18lhvp0i7lfbhyg4ry24qk06nfmsqlgb8qr1ag7hwwsxxssjhmxb"; depends=[dplyr ggplot2 gridExtra Hmisc lazyeval pander RColorBrewer reshape2 ROCR scales]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; funcy = derive2 { name="funcy"; version="0.8.6"; sha256="0wlcwwmv92djj35i7nnfns5l79fca6hsfrjxgsqmwgjb28gy19bs"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; @@ -5354,7 +5390,7 @@ in with self; { funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; funrar = derive2 { name="funrar"; version="1.0.2"; sha256="0qxhlqc1i0w91xmqawbsqk7gh8fdxq165qrjkbprsw548p5jbdbn"; depends=[cluster dplyr]; }; funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; }; - funtimes = derive2 { name="funtimes"; version="3.0"; sha256="017qad38q5zpbzpsln0cns7y1wf5q5xm7kll4knqrfa6zwaijl92"; depends=[Jmisc]; }; + funtimes = derive2 { name="funtimes"; version="4.0"; sha256="0a0xpybalk38p3n0fd5f3g4yav99j6ck03d1pkx0w2yqqxnviqhw"; depends=[dbscan Jmisc Kendall]; }; furniture = derive2 { name="furniture"; version="1.4.1"; sha256="1bziqav2y7h7fkv84ci3p483zbn2rw0wr0cz6jc5a9h8g1gz80cl"; depends=[knitr]; }; futile_any = derive2 { name="futile.any"; version="1.3.2"; sha256="09z12dlj7cnkfwnmgsjknsghirv1cry83w4a9k4d0w5a1jnlr5jg"; depends=[lambda_r]; }; futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; @@ -5401,6 +5437,7 @@ in with self; { gWidgetsRGtk2 = derive2 { name="gWidgetsRGtk2"; version="0.0-83"; sha256="1kn2095jx1amyzbkvgf7m466zqfv548n232xc555bpsrw9ma5qhk"; depends=[cairoDevice gWidgets RGtk2]; }; gWidgetstcltk = derive2 { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; + gaiah = derive2 { name="gaiah"; version="0.0.2"; sha256="1qc3crjxramyxl86dp8mcmvskixny7x6ji0jqf5dqf5r5qc7zrs9"; depends=[dplyr geosphere ggplot2 lazyeval magrittr maptools raster rgeos sp stringr tidyr]; }; gains = derive2 { name="gains"; version="1.1"; sha256="1mn8db8yxgkf8z6nm6k76g5l3i3vnw750ksg3w9ysd2pcabb65g1"; depends=[]; }; galts = derive2 { name="galts"; version="1.3"; sha256="0b18hsdcsx43rn8l4x9nhy9hgggjr5b8kvjnbxrf6r23qsdk43mn"; depends=[DEoptim genalg]; }; gam = derive2 { name="gam"; version="1.14"; sha256="1z31anm8c4aly7wd9j4zl34pfc0i8cr3p2yjhhf4x3850a1sjlv6"; depends=[foreach]; }; @@ -5446,7 +5483,7 @@ in with self; { gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; - gbts = derive2 { name="gbts"; version="1.0.1"; sha256="1n6180sfr5m7vms8rk8pwsg7nxyw3pmq05bh72462ygyfykivifm"; depends=[doParallel doRNG earth foreach gbm xgboost]; }; + gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; }; gbutils = derive2 { name="gbutils"; version="0.2-0"; sha256="1hi2kq4m7lrhd9yikf4qb0xccr6v1pp7kmly5j68xd3m95fi86rc"; depends=[]; }; gcKrig = derive2 { name="gcKrig"; version="1.0.1"; sha256="1iqbhfw4ib3lgjbaspjdh2qxif1inwly9fi8hyf4x6a153f20502"; depends=[Rcpp RcppArmadillo]; }; gcbd = derive2 { name="gcbd"; version="0.2.6"; sha256="1dvnly0aljv2c4x7sn3q55ncvfdfjfgp7w0k2900p77h4w8nixia"; depends=[DBI lattice Matrix plyr reshape RSQLite]; }; @@ -5459,8 +5496,8 @@ in with self; { gdalUtils = derive2 { name="gdalUtils"; version="2.0.1.7"; sha256="0n8c72m7dapy8agqcglagb8bwf0rpajdq9qsli3qyrrp7fh3h4ck"; depends=[foreach R_utils raster rgdal sp]; }; gdata = derive2 { name="gdata"; version="2.17.0"; sha256="0kiy3jbcszlpmarg311spdsfi5pn89wgy742dxsbzxk8907fr5w0"; depends=[gtools]; }; gdimap = derive2 { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; - gdistance = derive2 { name="gdistance"; version="1.1-9"; sha256="174ngm0xg993gkmf70yaln98d2rpjvdx5ngf2aga1jzph6xxdj6d"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.3.0"; sha256="185vsf8cvazk3865ds1vxwaaf3y8g7x52r5kp8rxkmnjavw6x24q"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; + gdistance = derive2 { name="gdistance"; version="1.2-1"; sha256="1wygcx0iki7g10f9gjbycrjjadmsw3153ha9rnqvc9hwwf34m9y1"; depends=[igraph Matrix raster sp]; }; + gdm = derive2 { name="gdm"; version="1.3.1"; sha256="10lb4lk4gx26ksr1njfqg13by1mam609ysi5k44pfj55mwna7k9r"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; }; gdns = derive2 { name="gdns"; version="0.2.0"; sha256="0cyyqmbdd520h8q6b9dficgh1vc8zf47bih72zdqbz2hrkjm4yc4"; depends=[httr jsonlite purrr stringi]; }; gdpc = derive2 { name="gdpc"; version="1.0.2"; sha256="03gh69vb3zmsi7rlikl3a7vr7sar3x12d8lar2qa0nfksn0qa6dk"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; @@ -5518,7 +5555,7 @@ in with self; { geoelectrics = derive2 { name="geoelectrics"; version="0.1.5"; sha256="0zy9m5k4b359mn29cd62cnwjm4fc19hy3l8p587yrrhsi20nbyna"; depends=[fields lattice rgl]; }; geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; }; geohash = derive2 { name="geohash"; version="0.1.2"; sha256="1vwalnf5cbpbq5b68zc6qa8mm84v5zlb8s2pwg7j2f7s43y0mgwz"; depends=[Rcpp]; }; - geojson = derive2 { name="geojson"; version="0.1.0"; sha256="0br2vp9lzqmz84scscclcd3d7ysvrdk68fxbc05ywnlsimdp5fxd"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; + geojson = derive2 { name="geojson"; version="0.1.2"; sha256="0f8zimw50ryi776l5yxx5pi11559sa2278plvx289v3lfb20f7ii"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonio = derive2 { name="geojsonio"; version="0.3.2"; sha256="10rnp4ws3465p8jv6b15zbl662swd373nmlbxxk3n8dy7049qwpj"; depends=[httr jsonlite magrittr maptools readr rgdal rgeos sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; geoknife = derive2 { name="geoknife"; version="1.5.2"; sha256="19adj5v14cxi32iadi4xlbg8f94vx4ail7454i4jj61i9a426ag1"; depends=[curl httr sp XML]; }; @@ -5588,6 +5625,7 @@ in with self; { ggpmisc = derive2 { name="ggpmisc"; version="0.2.14"; sha256="0747jmf8zvqc6zzglbpr2vizcy905zgc9hgdabgdkg4zhhmlcqys"; depends=[broom dplyr ggplot2 lubridate MASS plyr polynom splus2R tibble xts zoo]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; ggpubr = derive2 { name="ggpubr"; version="0.1.1"; sha256="1r1hhlw2zz1n1grwddd45sssdgrv43wf4dj9vjdryssz44rvxs85"; depends=[ggplot2 ggrepel ggsci plyr]; }; + ggraph = derive2 { name="ggraph"; version="1.0.0"; sha256="0xkhqkckqz201601aqznrgnlgqzs7is1nfpdyalag58q5wl934j8"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; ggraptR = derive2 { name="ggraptR"; version="0.1"; sha256="060ksjq790rvv9kyyf6v6z0irawlw3hxaq8n0dvzmfkw58pk5fpd"; depends=[dplyr DT futile_logger ggplot2 ggthemes shiny shinyBS shinyjs]; }; ggrepel = derive2 { name="ggrepel"; version="0.6.5"; sha256="0lm78662p1iajkcvq82g08zsv3s4lfmkpggg1wk9wpvmk78yj2in"; depends=[ggplot2 Rcpp scales]; }; ggsci = derive2 { name="ggsci"; version="2.0"; sha256="1045yi825lynw074cqi7r596ldbn7snj0rzdqcb5iwl5cn2s7gcw"; depends=[ggplot2 scales]; }; @@ -5599,7 +5637,7 @@ in with self; { ggtern = derive2 { name="ggtern"; version="2.2.0"; sha256="0ddcbbgp8ni3zbz4ailqx79i16aa2x4z4gvz55f0b731bilczw86"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; ggthemes = derive2 { name="ggthemes"; version="3.4.0"; sha256="1jj8lp7jbk3489kpgbw4b5phpn01gkfmksc21c6sn3x6wmzyn6hs"; depends=[assertthat colorspace ggplot2 scales]; }; ggvis = derive2 { name="ggvis"; version="0.4.3"; sha256="1p7c8f83da30grj5n0v80p5djp6z0r62z5zqpv2a3ahn61w1gm9l"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; - ghit = derive2 { name="ghit"; version="0.2.15"; sha256="07f7bz0n2bzs3m3q1hsld15n10nkk7ziwl37lxsf2gh9yv7xvfb3"; depends=[git2r]; }; + ghit = derive2 { name="ghit"; version="0.2.17"; sha256="16vhfv0j8f07p8dzqh93gws2zpb86h1glh062l8riar0gfpc34ia"; depends=[git2r]; }; ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; }; giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; @@ -5624,7 +5662,7 @@ in with self; { gldist = derive2 { name="gldist"; version="2160.2"; sha256="1dcf3pb4xqvhqj4m3xc3ihzjbzxjspjrnc8819hmlnmdd0csghmx"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.3"; sha256="1f3c4c8jjfslp5wc4mc3sc64qpin8bswz1fnv5zqg8dr4j8afq10"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; }; - glm_ddR = derive2 { name="glm.ddR"; version="0.1.0"; sha256="0siwy8jx0r0135sm8gyf8g7w05r3zlq6bns5f2s348njk19da9mn"; depends=[ddR Matrix]; }; + glm_ddR = derive2 { name="glm.ddR"; version="0.1.1"; sha256="123xqyw73l5lv746zvy2wjwr8xx6gpmwi5n86m8d05dj3bx02dzm"; depends=[ddR Matrix]; }; glm_predict = derive2 { name="glm.predict"; version="2.4-0"; sha256="10cpbl25csfs2ng7jj7hcfwl58akbx5dsdv1qlgbnvhf9rmlblww"; depends=[iterpc MASS nnet]; }; glm2 = derive2 { name="glm2"; version="1.1.2"; sha256="1x9pq2ddsz9al8w044qch34s3fahca63dz85lvm5qn16945ccw1s"; depends=[]; }; glmBfp = derive2 { name="glmBfp"; version="0.0-48"; sha256="1r8mc55v717g4666f07hkc13v9vhj96n7xvn2r3crjndq3w5x3yn"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; }; @@ -5683,7 +5721,7 @@ in with self; { gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; goldi = derive2 { name="goldi"; version="1.0.0"; sha256="1asn5r8klmpizmp8bfapfy5vraf7sxswm3fky6473hxajz4hyfvw"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.3.0"; sha256="1zjldi93g5871dw1vdxriw08rz5hrmpx530r76s6r0rlijs9lwal"; depends=[bigQueryR dplyr googleAuthR googleCloudStorageR jsonlite magrittr shiny tidyjson]; }; - googleAuthR = derive2 { name="googleAuthR"; version="0.4.0"; sha256="00dm7ccfm2sk3qmgffs3dx809ihwfhw49f6fsgnllm19qyxf5hl0"; depends=[devtools formatR httr jsonlite miniUI R6 roxygen2 shiny testthat]; }; + googleAuthR = derive2 { name="googleAuthR"; version="0.5.0"; sha256="0fk0rijn3529v918chpygvlkigj31dpimdfnkmhsgcznfarkc598"; depends=[devtools formatR httr jsonlite miniUI R6 shiny testthat]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.2.0"; sha256="02l3jml2sqw4m7fralr3dzyk06h8jinn6bi54gwc02f1y84j8qfh"; depends=[googleAuthR httr jsonlite readr testthat]; }; googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.1.0"; sha256="173y7m2j6iw848djjawkiy22fg56hnpx0m0q1halzwycqx6z08vc"; depends=[future googleAuthR jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.15.7.28"; sha256="1bkfj88rn8ai0kbjbd0s3zih6iz018xybr13w2h9i6wdi3dhs75s"; depends=[XLConnect XML]; }; @@ -5693,7 +5731,7 @@ in with self; { googleway = derive2 { name="googleway"; version="1.0.0"; sha256="01gzpb48iffir57cqw9hs2s4rxdllvdjf5hkmrf5zkjxhbzw7w14"; depends=[curl jsonlite Rcpp]; }; goric = derive2 { name="goric"; version="0.0-95"; sha256="05sbsnjjlpy1z0mfbsrihrp2gp4d66cvprhgzxy76lipgm5mmvqi"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; - gower = derive2 { name="gower"; version="0.1.1"; sha256="04k1c9h27wknp5bvzxq6gzv3yccmfhs3whnaic1phz4f9vx5g6bz"; depends=[]; }; + gower = derive2 { name="gower"; version="0.1.2"; sha256="1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"; depends=[]; }; gpDDE = derive2 { name="gpDDE"; version="0.8.2"; sha256="100g2f8zlpbwxb46h62pgvidll8aflz1zl4inyh8dml6vhm9pilp"; depends=[CollocInfer deSolve fda forecast lars limSolve MASS nnls penalized trustOptim TSA]; }; gpairs = derive2 { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive2 { name="gpclib"; version="1.5-5"; sha256="08j81b8wymsgin20n54gvm6m54rmdic51p6qzs9cz4pmgl7dkkjv"; depends=[]; }; @@ -5706,7 +5744,7 @@ in with self; { gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; gpuR = derive2 { name="gpuR"; version="1.2.1"; sha256="1k9nxsz4grjl8lyf9108vj94g2gpi6h0pbf5l63y2h5rn0lmpw8s"; depends=[assertive BH Rcpp RcppEigen RViennaCL]; }; gputools = derive2 { name="gputools"; version="1.1"; sha256="0np1lndvppdi409a1kfbbl0z5hr8wg2q473jch58zd16d2ickwkb"; depends=[]; }; - gquad = derive2 { name="gquad"; version="2.0-0"; sha256="0d2mg21ix1a08lk43mz0r84q49yhgh7w9jyxa89lmx9ihzl42nhx"; depends=[ape seqinr]; }; + gquad = derive2 { name="gquad"; version="2.1-0"; sha256="0s7crpirscbij2y25scwzb9fyp9ych1n80fij2ajda9zaqcyyin8"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; }; gradDescent = derive2 { name="gradDescent"; version="2.0"; sha256="0qfm9vzi8j083na5ziwjypycbw6ncwk75xsaam2vc4xhfarw8fjs"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; @@ -5767,7 +5805,7 @@ in with self; { gsl = derive2 { name="gsl"; version="1.9-10.3"; sha256="00isw2iha5af4s7rr8svqka9mkl9l26l8h2rnk4r7fkhh7fc97sg"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gsrc = derive2 { name="gsrc"; version="1.1"; sha256="12rrp9v0r5qzxcs1l29238nkc1haql1c4vva3vdm26kglpg7qj18"; depends=[Ckmeans_1d_dp dbscan DNAcopy illuminaio limma openxlsx preprocessCore R6]; }; - gss = derive2 { name="gss"; version="2.1-6"; sha256="1vkdhji8xpnq9j2ah3vnfvhyjnkgk406grws4q3gj4csbpkkzh86"; depends=[]; }; + gss = derive2 { name="gss"; version="2.1-7"; sha256="1nrs1yhf2h06pkkhkvaal92h0mzrwixs0pay6dkb8q2d9igbn184"; depends=[]; }; gsscopu = derive2 { name="gsscopu"; version="0.9-3"; sha256="0bvhhs5wn4y1dcff2g87f80jdn3i4mdbvdbydsbx80ng38rfxhhg"; depends=[gss]; }; gstat = derive2 { name="gstat"; version="1.1-4"; sha256="138v8accqwf95a3i980x57wd2j8vmdg1ga44rx9nbjcpyxc5x6mf"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive2 { name="gsubfn"; version="0.6-6"; sha256="196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv"; depends=[proto]; }; @@ -5815,7 +5853,7 @@ in with self; { hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; hashmap = derive2 { name="hashmap"; version="0.1.0"; sha256="1pp62py2n8ajv90fmv4zkga3hshk9cj1qfzagnp8jnfym0jp9rlc"; depends=[BH Rcpp]; }; hashr = derive2 { name="hashr"; version="0.1.0"; sha256="1ri2zz2l1rrc1qmpqamzw21d9y06c7yb3wr60izw81l8z4mmyc3a"; depends=[]; }; - hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.2"; sha256="0rh5kl9ivv9ckv5j5fqwdcflbfzkjicmqrddgxnzbv1iwyph4c0w"; depends=[graph Rgraphviz]; }; + hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.3"; sha256="1r9z6jc9lbdj2xc81gpnbswrl8rhs8zrlsnypfrny40g3j402iap"; depends=[graph Rgraphviz]; }; haven = derive2 { name="haven"; version="1.0.0"; sha256="15ynk1qm4g9m6ng4lc1x3hwjb2xak6b795ifh5q1k4mmx07xz6dl"; depends=[BH hms Rcpp readr tibble]; }; hawkes = derive2 { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; hazus = derive2 { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; }; @@ -5828,7 +5866,6 @@ in with self; { hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; hddplot = derive2 { name="hddplot"; version="0.57-2"; sha256="1mckgd99wvxbqvpyx231r97kysppnn1xggy8jvnc31sxq8m9gfr7"; depends=[MASS multtest]; }; - hddtools = derive2 { name="hddtools"; version="0.5"; sha256="1cihc3kn8nvcj0z314b7md02xb108xkrnz1j4svr6hcxwxvv97c5"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr XML zoo]; }; hdeco = derive2 { name="hdeco"; version="0.4.1"; sha256="04nggwckvn1kwi238qd33l4pryzn4aq5bmi30bvfi99gwnrlgfgq"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; @@ -5927,6 +5964,7 @@ in with self; { hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; }; hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; }; + hrbrthemes = derive2 { name="hrbrthemes"; version="0.1.0"; sha256="1hf4370hj80m6zr20236p9068g6ky0366gfk5l9hnj6l8jpmy9qa"; depends=[extrafont ggplot2 hunspell purrr scales stringi]; }; hrr = derive2 { name="hrr"; version="1.1.1"; sha256="17jzsgh2784y7jdwpa50v7qz99dw6k2n25sisnam6h1a39b96byn"; depends=[]; }; hsdar = derive2 { name="hsdar"; version="0.5.1"; sha256="0n5d05f7bh9zsjipfzf07yx71ccqdkarmmm4a1ryah7sjlg0zpil"; depends=[caret raster rgdal rootSolve signal]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; @@ -5957,7 +5995,6 @@ in with self; { hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; - hwriterPlus = derive2 { name="hwriterPlus"; version="1.0-3"; sha256="1sk95qgpyxwk1cfkkp91qvn1iklad9glrnljdpidj20lnmpwyikx"; depends=[hwriter TeachingDemos]; }; hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; hybridHclust = derive2 { name="hybridHclust"; version="1.0-5"; sha256="0w06vna66hlmvx10dl1l0nzbnxkd634gxjz26w015f83vpmfc5vz"; depends=[cluster]; }; @@ -6024,7 +6061,7 @@ in with self; { icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; icenReg = derive2 { name="icenReg"; version="1.3.6"; sha256="024iwpwbn3g2lsq9kn6p86m1qdj1ndlfakk6hsijc8akg0cmmzcg"; depends=[foreach MLEcens RcppEigen survival]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; - icesAdvice = derive2 { name="icesAdvice"; version="1.2-0"; sha256="0z3b31qj0wggd2yayvgivrpg9435bi8pmsp11rg2vwz4vfsqvlkb"; depends=[]; }; + icesAdvice = derive2 { name="icesAdvice"; version="1.3-0"; sha256="1csyw7sav56vkgwjllixjbgpy3ka9xivhr9pgb26iihgwwpnhdds"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; icesSAG = derive2 { name="icesSAG"; version="1.2-0"; sha256="05fj1sx9fbpyhmng7llmayc2m0gvfyak6ispjkwrx55hms17i5p9"; depends=[png]; }; icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; }; @@ -6106,7 +6143,7 @@ in with self; { inline = derive2 { name="inline"; version="0.3.14"; sha256="0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; inlmisc = derive2 { name="inlmisc"; version="0.2.4"; sha256="1j2wxzm45zzykm29swvqj6hdscgxq6094s4wwj6rr7nwpp9v3qni"; depends=[dplyr igraph knitr raster rgdal rgeos sp]; }; - inpdfr = derive2 { name="inpdfr"; version="0.1.3"; sha256="1qdnh4bcwhg587y4s1r27vqmx3i4fsg8gvnrl4gx1nk7r2fhsqxc"; depends=[ca cluster entropart metacom R_devices RColorBrewer RGtk2 SnowballC stringi tm wordcloud]; }; + inpdfr = derive2 { name="inpdfr"; version="0.1.5"; sha256="161p45hj5h6yxn9w140gkcsj2y90lqc8avsj2dsg3gnzyks07as1"; depends=[ca cluster entropart metacom R_devices RColorBrewer RGtk2 SnowballC stringi tm wordcloud]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; inspectr = derive2 { name="inspectr"; version="1.0.0"; sha256="04rpr5ajpdx1d49y327dryxwxk27yljj4c96i9qglf02i9kmplkg"; depends=[openxlsx]; }; @@ -6121,6 +6158,7 @@ in with self; { interactionTest = derive2 { name="interactionTest"; version="1.0"; sha256="1ppc476glwf0bsr1wgzircvnhgn9kkbhy3rskfz671ma6fv3p67b"; depends=[]; }; intercure = derive2 { name="intercure"; version="0.1.0"; sha256="0j71dqcbcfl1zpfidh3xys5h3ggyhrzq3avkdm9v18pv464x8xlv"; depends=[foreach iterators MASS Matrix survival]; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; + interflex = derive2 { name="interflex"; version="1.0.2"; sha256="0ybfk9jxfc98jd97pg469wrddllhm43hgg4lwg1i1gmz34y84yf2"; depends=[doParallel foreach ggplot2 Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; }; intergraph = derive2 { name="intergraph"; version="2.0-2"; sha256="1ipxdrfxhcxhcbqvrzqh3impwk4xryqlqlgjl7f2mwrf365zs6ph"; depends=[igraph network]; }; internetarchive = derive2 { name="internetarchive"; version="0.1.6"; sha256="1cx9dxlrdz1xak4jrrjs2wsq6ml8n2xl0n0s6n9h3g247j4lfvnm"; depends=[dplyr httr]; }; interplot = derive2 { name="interplot"; version="0.1.5"; sha256="0svhs7mj987vravirhmp4788qvqm32v614qj7q06b2y4va477yj8"; depends=[abind arm dplyr ggplot2]; }; @@ -6133,7 +6171,7 @@ in with self; { intrval = derive2 { name="intrval"; version="0.1-1"; sha256="1p66cjpn43xib7rrnyv3jqr6bb49d3dxf888p8hxnr7kx9wfalkn"; depends=[]; }; intsvy = derive2 { name="intsvy"; version="1.9"; sha256="080vklwfrnm5gfcympwi1llipkk5a3qh2xw6m91k9p6xyvnl3rrz"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; }; intubate = derive2 { name="intubate"; version="1.0.0"; sha256="03ikqwai7wdahdfyzdy42xs8qpdhl9gmbak2qd82yxjl62956i8c"; depends=[]; }; - inum = derive2 { name="inum"; version="0.9-1"; sha256="11aks7y41298rqdbawg016akam99qxf2f6rwwkkvzp62syp2ip6g"; depends=[]; }; + inum = derive2 { name="inum"; version="0.9-2"; sha256="0bqk9hh3ps0ria52fh3xfpis9wazh04fj9bbdd3ydj7inwj2lxxs"; depends=[]; }; invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; @@ -6150,9 +6188,9 @@ in with self; { ipdw = derive2 { name="ipdw"; version="0.2-5"; sha256="1a0xlhzmnc3l3fvn1v3rgxwg0va0418yq62i2dlq0l5djcfbxyc3"; depends=[gdistance raster sp]; }; ipflasso = derive2 { name="ipflasso"; version="0.1"; sha256="12cyn7wpkrjqrjccb26mi375ijqplps4216ldj7w3az9g8pzihv3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; - ipft = derive2 { name="ipft"; version="0.2.2"; sha256="1wncz4plz8gziv33yvwkdiw7shpbhs357ag0i9350yn5h9zhhp9b"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; + ipft = derive2 { name="ipft"; version="0.2.8"; sha256="0jyg69bj32j1xgnwrl233s6bi85drhry94midsrjqn3g2ik6xafz"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; iplots = derive2 { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; }; - ipred = derive2 { name="ipred"; version="0.9-5"; sha256="193bdx5y4xlb5as5h59lkakrsp9m0xs5faqgrp3c85wfh0bn8iis"; depends=[class MASS nnet prodlim rpart survival]; }; + ipred = derive2 { name="ipred"; version="0.9-6"; sha256="1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.6.4"; sha256="1cpp0cp6cfdrh23wjjqvng9dszjmp5a90bgd6sbgcfckn2si0ly1"; depends=[RColorBrewer Rcpp RcppEigen]; }; ips = derive2 { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; }; iptools = derive2 { name="iptools"; version="0.4.0"; sha256="0c3j5sl129xl75p14qr880ll1y3yss3zqg39zbj2jp6wcv9rvafx"; depends=[AsioHeaders BH ISOcodes Rcpp]; }; @@ -6166,7 +6204,7 @@ in with self; { irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; irtoys = derive2 { name="irtoys"; version="0.2.0"; sha256="1rjw7f8r7kg4yrlkv6cwiiggm6hgx3gqc4jzcmvvmv0ycyi2w3pw"; depends=[ltm sm]; }; irtrees = derive2 { name="irtrees"; version="0.1.0"; sha256="03jmfyx1ia987zhi74fmmcdz70wnm8c7z5z30rwzd1cs11dijjwv"; depends=[]; }; - isa2 = derive2 { name="isa2"; version="0.3.4"; sha256="12qbfvcj8whhy7d68l7ra5wnkpx87ldl6mir7r5n8afb3fkww0kp"; depends=[lattice]; }; + isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.2.0"; sha256="061wi94rj3iyvf3dgvcjy0x46hvwhr4ifx0jhirz44bj0c8g3h7j"; depends=[data_table tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; @@ -6231,15 +6269,17 @@ in with self; { jrvFinance = derive2 { name="jrvFinance"; version="1.03"; sha256="16mki26ns593xn1p1la2ihkddlwvzwdvjr3h2vz71bq5db11iffq"; depends=[]; }; js = derive2 { name="js"; version="0.2"; sha256="1dxyyrmwwq07l6pdqsvxscpciy4h1021h9ymx8hi2vqvv0mdrz76"; depends=[V8]; }; jsonld = derive2 { name="jsonld"; version="1.1"; sha256="1bmfdcyjcz3cgy0vkliwvd97kww8djdib08bsq99v485gspl2x87"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.2"; sha256="0k966hzp3qnwck7fgd76w49zrz39s7pqyywws17bhbcd8rh4csyb"; depends=[]; }; + jsonlite = derive2 { name="jsonlite"; version="1.3"; sha256="0y55znjn69af4d4cy7n8r3nlgblnri7vdhvzpvp4fq4n43faqzsw"; depends=[]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5"; sha256="01f1wrbgj7v6pzrx5vd8pgpm78fanyx59s84m5a5732q5g39shlk"; depends=[Rcpp]; }; + jtools = derive2 { name="jtools"; version="0.4.2"; sha256="0jzp284ac43s89p9cl5f3x8jcsw09ywjwi5b72zlwbx2a6x6bbq4"; depends=[]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; - jug = derive2 { name="jug"; version="0.1.4"; sha256="1rf3akm9w5sbp59w1070ygqz1b9krq6lilbxp9r4w234c8k81a27"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; + jug = derive2 { name="jug"; version="0.1.6"; sha256="19n6fi26yssid1xlixwmvqd6720rvn2jcnw7347izsmlxxyip6hv"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; junr = derive2 { name="junr"; version="0.1.1"; sha256="1rkr6kyf2p3rr39w0nqfvcrcd2b0r411if7812zijnn20vrmsmda"; depends=[httr jsonlite]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; jwutil = derive2 { name="jwutil"; version="1.1.1"; sha256="114vph86722v89iwyla7skl06cv87ymfy6nmca5iyxwx1z78zddz"; depends=[checkmate Rcpp]; }; kSamples = derive2 { name="kSamples"; version="1.2-4"; sha256="1k026wbzcrzzr3ji3gdnhbj13nrmbp6ybbcki3v3gk6s0xk6f2rx"; depends=[SuppDists]; }; + kableExtra = derive2 { name="kableExtra"; version="0.1.0"; sha256="0sgk2sdjnlip9pl2wd2gn53hwz60wyc0926iy69swnv48vhaa6c6"; depends=[knitr magrittr rmarkdown rvest stringr xml2]; }; kamila = derive2 { name="kamila"; version="0.1.1.1"; sha256="06jl868i8a6zg3pyaf1r6ccd33ya5f83apc5w6d3m111dzdqqlcy"; depends=[abind gtools KernSmooth mclust plyr Rcpp]; }; kantorovich = derive2 { name="kantorovich"; version="2.0.0"; sha256="0y965nkhgk0z2q2j3sycfg76aqqi3ry8avg0bz9xggpd60bhh5vd"; depends=[gmp lpSolve rcdd Rglpk]; }; kappaSize = derive2 { name="kappaSize"; version="1.1"; sha256="0jrjal8cvy2yg0qiyilmv3jl3ib5k9jg8gp2533kdsx4m0sack04"; depends=[]; }; @@ -6263,7 +6303,7 @@ in with self; { kernlab = derive2 { name="kernlab"; version="0.9-25"; sha256="0qnaq9x3j2xc6jrmmd98wc6hkzch487s4p3a9lnc00xvahkhgpmr"; depends=[]; }; kernscr = derive2 { name="kernscr"; version="1.0.3"; sha256="0h3xv76dxch8kv4z7cgx60iaikk6906n75c4kc1mccpw0jvyxrvb"; depends=[MASS mvtnorm]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; - keypress = derive2 { name="keypress"; version="1.0.0"; sha256="16msbanmbv2kf09qvl8bd9rf1vr7xgcjzjhzngyfyxv90va3k86b"; depends=[]; }; + keypress = derive2 { name="keypress"; version="1.1.1"; sha256="0w8hcxxx47zyz2cbz2s8va2rfb6s2ziw9ck1slq9kh3aqsx3i9g0"; depends=[]; }; keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; kfigr = derive2 { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; }; kimisc = derive2 { name="kimisc"; version="0.3"; sha256="1cdjhfdfidilvz0w92xfjwwnp2h73y8l1n7fxnh5jsv6wnx491l4"; depends=[plyr pryr]; }; @@ -6272,6 +6312,9 @@ in with self; { kinfit = derive2 { name="kinfit"; version="1.1.14"; sha256="0gb43pghgllb9gzh8jzzpfmc46snv02ln4g3yqsdah3cyqnck0ih"; depends=[]; }; kinn = derive2 { name="kinn"; version="0.2"; sha256="14vckrk3sppxswccy4qiyc7pbzkwncwag4acbkbqfnm84pxblh3m"; depends=[caret caTools igraph KRLS mclust stringr]; }; kinship2 = derive2 { name="kinship2"; version="1.6.4"; sha256="19r3y5as83nzk922hi4fkpp86gbqxdg1bgng798g1b073bp6m9yj"; depends=[Matrix quadprog]; }; + kirby21_base = derive2 { name="kirby21.base"; version="1.5.1.1"; sha256="0gvxvwqwn5bhmwr632gbvh2ikkygqw4vqyn6jbwgnkaxqq127p11"; depends=[git2r]; }; + kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.5.1"; sha256="1hifxp6ilzgakbdz067lmpz1wrq8ah9a8kv542717z1pn6bmw69w"; depends=[kirby21_base kirby21_t1]; }; + kirby21_t1 = derive2 { name="kirby21.t1"; version="1.5.1"; sha256="0gs39fy8wxrilgfyz1dlkaar4gf9qifcdxc4vzy2vha0z2ci46sy"; depends=[kirby21_base]; }; kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; kitagawa = derive2 { name="kitagawa"; version="2.1-0"; sha256="1ddyd0rwwmdpbq823qass5dlp2lvi9d64wpl61ik6fghms2p9ryr"; depends=[kelvin]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; @@ -6298,7 +6341,7 @@ in with self; { knockoff = derive2 { name="knockoff"; version="0.2.1"; sha256="197icnyxxmi6f0v0p2zm4910grbgkfjkd3xql79ny04ik047v0kp"; depends=[glmnet RJSONIO]; }; knotR = derive2 { name="knotR"; version="1.0-1"; sha256="02mr950150m2gzagxf5yzps8fnwspagh3k8prh9zww2jss0471rm"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.0"; sha256="0vcmm4vjawmyaqpqv0g6y5dfcixn0rjhcfr3nfc2781a4w7ydnc9"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr]; }; - koRpus = derive2 { name="koRpus"; version="0.06-5"; sha256="0anip3m7shp8lj2xd2gks7cbwxfkhp3pz9hn7ijf7b5q5r4gvl15"; depends=[]; }; + koRpus = derive2 { name="koRpus"; version="0.10-1"; sha256="1f7mspq7iiahpqfj57n63i8b0qs73qgmvpgm1yxi0ax5zjdnspqb"; depends=[data_table]; }; kobe = derive2 { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[coda emdbook ggplot2 MASS plyr reshape]; }; kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; }; kohonen = derive2 { name="kohonen"; version="2.0.19"; sha256="0fi94m2gpknzk31q3mjkplrq9qwac8bjc8hdlb3zxvz6rabbhxrr"; depends=[class MASS]; }; @@ -6367,7 +6410,7 @@ in with self; { latticeExtra = derive2 { name="latticeExtra"; version="0.6-28"; sha256="1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"; depends=[lattice RColorBrewer]; }; lava = derive2 { name="lava"; version="1.4.7"; sha256="1gzla8ns3n899vfz80yjx8bb2pcnrvp52c5rxxw591clba1x9jym"; depends=[numDeriv survival]; }; lava_tobit = derive2 { name="lava.tobit"; version="0.4-7"; sha256="1da98d5pndlbbw37k64fmr2mi1hvkhjxsmm3y9p4b772pz9i1pvj"; depends=[lava mvtnorm survival]; }; - lavaan = derive2 { name="lavaan"; version="0.5-22"; sha256="1z6b4xf9zymyikmi8q4kj0cn6xy8m2p31yc6zah539jk9cxpi304"; depends=[MASS mnormt pbivnorm quadprog]; }; + lavaan = derive2 { name="lavaan"; version="0.5-23.1097"; sha256="11wxzjg09q5wzvbp1lhi9sjnp4rrjpdxnmq3zf8npx08iwkw79ws"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.1"; sha256="06k9myq33p9jz7rz6ffansgi27ang4gq0s179vgsrdi10krxxg1b"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lawn = derive2 { name="lawn"; version="0.3.0"; sha256="0rws76dzpi2gpn90la663r1g9ywvpvjicjmgb6z7k5xg1gspgs5c"; depends=[jsonlite magrittr V8]; }; @@ -6398,7 +6441,7 @@ in with self; { ldstatsHD = derive2 { name="ldstatsHD"; version="1.0.0"; sha256="1phz9hwhfw7lcvz5gg0l3w3j3jig0bw4wxbx6j4z7dlr4bisyng8"; depends=[camel cluster corpcor evd fExtremes huge igraph MASS Matrix RBGL robustbase VGAM]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; leaflet = derive2 { name="leaflet"; version="1.1.0"; sha256="05faikqdlbsj9lvl1lvhmagys71597jvgah8b9f1fqhgyj0bwx7l"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; - leafletCN = derive2 { name="leafletCN"; version="0.2"; sha256="10kkclna64jwfmmn5rw91rb4f0cxqr62027vp1699iqm553dvhhd"; depends=[htmltools jsonlite leaflet magrittr sp]; }; + leafletCN = derive2 { name="leafletCN"; version="0.2.1"; sha256="1rg39n4bjacwss9nbdnz8y2zh8hxlc7a5ygndhjbmzajnbxfh09b"; depends=[htmltools jsonlite leaflet magrittr rgeos sp]; }; leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; }; leapp = derive2 { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; }; leaps = derive2 { name="leaps"; version="3.0"; sha256="11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"; depends=[]; }; @@ -6412,7 +6455,7 @@ in with self; { lestat = derive2 { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="2.6"; sha256="19gs0xlbjvx95047pzzl36x42898qkc61qgr1isavf7hph41ak46"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; }; - lexRankr = derive2 { name="lexRankr"; version="0.3.0"; sha256="0afgjzcmhnrq30n1mkzx51f0yk369ds5sh47a4z8z56w2w5sb8ik"; depends=[dplyr igraph magrittr Rcpp SnowballC stringr tidyr tm]; }; + lexRankr = derive2 { name="lexRankr"; version="0.4.0"; sha256="149q96yyag375ggflrginim9phbmqaap3hpgjx02rqmbdf38dywg"; depends=[dplyr igraph magrittr Rcpp SnowballC stringr tidyr tm]; }; lexicon = derive2 { name="lexicon"; version="0.1.1"; sha256="0iibyzmgmkkmw0x7n9j1hklf7ff0r0aayb7khg9wbgsa7x1z20im"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.0"; sha256="0j2sq3kh9qgc8z7q8j6fl2n4zih8b7y1yapswsw928b1glava8p7"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.2"; sha256="0y59iigcpmyrmsiwrpv5agja6vz3wxmxd9sl5hbf1ybm4d0lyky4"; depends=[plyr rARPACK]; }; @@ -6445,15 +6488,16 @@ in with self; { linbin = derive2 { name="linbin"; version="0.1.1"; sha256="0i99j7n1hxvnm2605b2xr4mxpib64abr10wp03nxii16nssvv66m"; depends=[]; }; linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; lineup = derive2 { name="lineup"; version="0.37-6"; sha256="1xyvw00lwnx7j3cgk4aw69lam6ndjxx3wj14h4jpx1xn8l3w7652"; depends=[class qtl]; }; - lingtypology = derive2 { name="lingtypology"; version="1.0.1"; sha256="1k56x651c84sc60fmz1yf0x5436dnh6v3vxh8yq9hk5qpmkgz8h9"; depends=[leaflet magrittr rowr stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.0.2"; sha256="1m0szmlraqvqvqcj5nlfkpcwckiagc31qkd834m00w47kggmzlhb"; depends=[leaflet magrittr rowr stringdist]; }; link2GI = derive2 { name="link2GI"; version="0.1-0"; sha256="1i16yf387izv8vn0z8f7wgk02hld83lhfb5c263mn1v3q5zj9kki"; depends=[gdalUtils raster rgdal rgrass7 sf sp]; }; linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; }; linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; - lintools = derive2 { name="lintools"; version="0.1.1.1"; sha256="1rsya48abvr5zijd10bh5g03hjviyack2gh0waawqhv29lhiy9f1"; depends=[]; }; + lintools = derive2 { name="lintools"; version="0.1.1.3"; sha256="0jxy7wp7jg02d59fb3cdhpmnqzdxrdvs858g3yfamx6fjgb6bd8i"; depends=[]; }; lintr = derive2 { name="lintr"; version="1.0.0"; sha256="0d03lwr96pdvkdxgjlrzj591dkaxm2rbdk2n3jgr1k428v6jkzy0"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; + liquidSVM = derive2 { name="liquidSVM"; version="1.0.1"; sha256="1440zkna0l79q1klfl91gif90q9fp0g05lyrvbbslhvcynwkgj7y"; depends=[]; }; lira = derive2 { name="lira"; version="1.2.0"; sha256="1n4vjq5v0qj26bq56w5vchwdv10ysc94aizblwm1wl9ss8lpsc0a"; depends=[coda rjags]; }; liso = derive2 { name="liso"; version="0.2"; sha256="072l7ac1fbkh8baiiwx2psiv1sd7h8ggmgk5xkzml069ihhldj5i"; depends=[Iso MASS]; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; @@ -6556,6 +6600,7 @@ in with self; { lrgs = derive2 { name="lrgs"; version="0.5.1"; sha256="1hzcmrvax03bzrljnqskmnnpsw6amnwcfygnls727369h0dbzc4a"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; lsa = derive2 { name="lsa"; version="0.73.1"; sha256="1af8s32hkri1hpngl9skd6s5x6vb8nqzgnkv0s38yvgsja4xm1g5"; depends=[SnowballC]; }; + lsasim = derive2 { name="lsasim"; version="1.0.0"; sha256="05b4ddrqs7kpz8nqgarydh9har9v2k0fx8njwzaj3gnih8jzdn84"; depends=[]; }; lsbclust = derive2 { name="lsbclust"; version="1.0.4"; sha256="0a0l1vvr4gp1vvqccjicy4qh7l2kwyh7k503yi403d0987zqywcc"; depends=[clue ggplot2 gridExtra plyr Rcpp reshape2]; }; lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsei = derive2 { name="lsei"; version="1.1-1"; sha256="1akvkccf2cq331agcsi24x3cw73cc8vdl7kw3zjyg8q6lmvq78am"; depends=[]; }; @@ -6579,7 +6624,7 @@ in with self; { lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; }; ludic = derive2 { name="ludic"; version="0.1.5"; sha256="03ywna9fd2ypwchwx58ccmlxjdnx7zav7pqxwrc5bh3hrfbsxl13"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; lulcc = derive2 { name="lulcc"; version="1.0.1"; sha256="1xq4rjsds9vwj4prkjxfcp9sv53ha9pj65ns0frpbh8grvrjwimv"; depends=[lattice raster rasterVis ROCR]; }; - lumendb = derive2 { name="lumendb"; version="0.2.1"; sha256="0cmbiiixvf6c33vxzcn4q48asinlsplmc5xpj5h84xnysa6zs3xv"; depends=[httr xml2]; }; + lumendb = derive2 { name="lumendb"; version="0.2.2"; sha256="0x1k90h6aw7fpvmgbbdmkqvgxfnn4w5xxfck7f4r7zhaxfqbzp2s"; depends=[httr xml2]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; @@ -6639,7 +6684,7 @@ in with self; { mapproj = derive2 { name="mapproj"; version="1.2-4"; sha256="1sywwzdikpnkzygb2jx9c67sgrykgbkm39dkf45clz3yylsib2ng"; depends=[maps]; }; mapr = derive2 { name="mapr"; version="0.3.0"; sha256="0xgbc4zpjdd6lncccdd85ar909z7bv8yqrv5s1xrp2j2j1gv97z1"; depends=[ggplot2 gistr httr leaflet RColorBrewer rworldmap sp spocc]; }; maps = derive2 { name="maps"; version="3.1.1"; sha256="0ajdrd4z66jpdjqdgk6vz89x7gh1isidgr8qkg0fq6cmrvjn08lp"; depends=[]; }; - maptools = derive2 { name="maptools"; version="0.8-41"; sha256="0niz4qssvd8g43z4a85mq5p7cs3s169sgc3p3rzviqqgcc0i6z7n"; depends=[foreign lattice sp]; }; + maptools = derive2 { name="maptools"; version="0.9-1"; sha256="0ma1diflrkq9wa6qjli6ncjn17b3rqrgjwq984dx5djy9f5bjf3f"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="1.2.0"; sha256="0785jzs3kr6rcxz5p1mwpz7maq3z2mwxskl6whyzizbrkmxj2ikw"; depends=[brew data_table gdalUtils htmltools htmlwidgets lattice latticeExtra leaflet png raster Rcpp rgdal satellite scales sp viridisLite webshot]; }; @@ -6679,7 +6724,7 @@ in with self; { maxlike = derive2 { name="maxlike"; version="0.1-7"; sha256="0gi33hcjj456sjw7l3q4n46k4cb6m3ml3ycd93pnajxacl24swbb"; depends=[raster]; }; maxmatching = derive2 { name="maxmatching"; version="0.1.0"; sha256="1xbwrhmr8gzvlcprib7nzvqrcd355bhx7wkqxrvfk4g7dvskf9ka"; depends=[igraph]; }; maxnet = derive2 { name="maxnet"; version="0.1.2"; sha256="1rfcylbv068pz4jgry5ijszwf5fibz566s5iv0ar8dhv0fhjr86z"; depends=[glmnet]; }; - maxstat = derive2 { name="maxstat"; version="0.7-24"; sha256="1l7q83233jbxsly081mnc7lf20nn894hcynq3sm3hjxkvrplzsm9"; depends=[exactRankTests mvtnorm]; }; + maxstat = derive2 { name="maxstat"; version="0.7-25"; sha256="114z1rwxwvk05ijjhdppzm148n1h192fp0w12ky10zkrhf6kphbg"; depends=[exactRankTests mvtnorm]; }; mazeGen = derive2 { name="mazeGen"; version="0.1.1"; sha256="1vqhcypxbw15prc77i1jl8vnb1q3lr9bb9s6ql2pcadv3i02ybnb"; depends=[igraph]; }; mbbefd = derive2 { name="mbbefd"; version="0.8.8"; sha256="17f2y4xi5fxc6mms519xjb9qg94qqlxv0mhdbhjyyfg3x6bj7bsq"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; @@ -6762,7 +6807,7 @@ in with self; { metaSEM = derive2 { name="metaSEM"; version="0.9.12"; sha256="1lmsqpfb1yxdlwb2qhcsm7111w25qlz6794i2pwf5wmaixwyw0nj"; depends=[ellipse MASS Matrix OpenMx]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; metacoder = derive2 { name="metacoder"; version="0.1.2"; sha256="0srrmmn86jpxdx463qngd1fj8ssnly18kb74csa9957n1lr0l9xf"; depends=[ape dplyr ggplot2 igraph lazyeval magrittr RColorBrewer RCurl readr reshape reshape2 scales seqinr stringr taxize traits zoo]; }; - metacom = derive2 { name="metacom"; version="1.4.4"; sha256="14snpgdl8lwfh3fy63728jpxp6yjchq7i5sqfhzkfmrmy3kwgl22"; depends=[vegan]; }; + metacom = derive2 { name="metacom"; version="1.4.5"; sha256="1c79sm0b00mm723g3h9llxlk33zk6f9yv6z10jx1la6kk1cgs7a2"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; metafor = derive2 { name="metafor"; version="1.9-9"; sha256="14287z65ffm013787wfnyb9842zcv63i97g445xa4j8075p8sp7p"; depends=[Matrix]; }; @@ -6777,7 +6822,7 @@ in with self; { metaplus = derive2 { name="metaplus"; version="0.7-9"; sha256="1hrczccszx9jcgifwg6wsigsbm8ih4xjr00knb0rxyygijk38c82"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; metasens = derive2 { name="metasens"; version="0.3-1"; sha256="0nxvllfa2x6v2hpgind5xr0i40wi7cpdd18lwgy9s4jpgbn0n17p"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-4"; sha256="0bz6gg2n4ffkr144jxk27y24xpqhp8awr09wkaijmv8902qx6qah"; depends=[]; }; - metavcov = derive2 { name="metavcov"; version="0.1"; sha256="0d57gn802cnpmvyxkczmqafllglzgw17jn4rpj659s16qh0fz4j2"; depends=[corpcor]; }; + metavcov = derive2 { name="metavcov"; version="1.0"; sha256="183xrrdz8agwcxgn8i4jg28f8gqskim9wcz193524fjhcm4bklxr"; depends=[corpcor]; }; metaviz = derive2 { name="metaviz"; version="0.1.0"; sha256="1cl44dvd625sfz906cggrj092bxy35vsiglalsay9frsi440d82p"; depends=[ggplot2 plyr RColorBrewer]; }; meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; @@ -6786,7 +6831,7 @@ in with self; { meteoland = derive2 { name="meteoland"; version="0.5.2"; sha256="17sfi14q5cp74cmlvhbyg6xlpiw9ssqc4kp48r41allk38dfk1zd"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; metricTester = derive2 { name="metricTester"; version="1.3.2"; sha256="1n64l69w5skbymizm5ghq50gwhpasyk9zmywib6hkd9k5ijgayv5"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - mets = derive2 { name="mets"; version="1.2"; sha256="078g04bj3ipwz3cw5wkz0gvj1dmd5vxygkwpz4pymg0r9svy2yf2"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; + mets = derive2 { name="mets"; version="1.2.1"; sha256="0wmycy87v0hry7vzyz3vjpjq8cx7nraigihwch04nfhpg6x4zal8"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; mev = derive2 { name="mev"; version="1.10"; sha256="0kidgghwjc81rx2vb8y1iiwvlfxafv7r11n3zz1gb7705w6ynw1m"; depends=[boot evd gmm ismev nleqslv numDeriv Rcpp RcppArmadillo rootSolve]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; mexhaz = derive2 { name="mexhaz"; version="1.1"; sha256="168a8b3y17nh2dalqanph384laf2awv3jdk8dm9cl5jbkh7ah4lb"; depends=[MASS statmod survival]; }; @@ -6850,17 +6895,17 @@ in with self; { minval = derive2 { name="minval"; version="0.5"; sha256="1pbcfcaysaicppkzvnllvvx2jykc17nk3331n0rl41x56jxcjsgd"; depends=[gdata XML]; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.1"; sha256="18cfv8s38cd0g1wc5pry6a4m2ykqflkxhqbqnjbjvmr42bj3r6sp"; depends=[cmm numDeriv Rsolnp]; }; - mirt = derive2 { name="mirt"; version="1.22"; sha256="0jzxmj2a0kq0xylsxrkd6j9rzvy3y0qkl823pb84mc3zv2jwnjrx"; depends=[GPArotation lattice mgcv numDeriv Rcpp RcppArmadillo sfsmisc]; }; - mirtCAT = derive2 { name="mirtCAT"; version="1.3"; sha256="00zmli79ll313qjjl0j28ibxdjn41zfgwx43cg9mzzm6ayiz26ci"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; + mirt = derive2 { name="mirt"; version="1.23"; sha256="13dx1ir09lmvapjv6igya71w5yp6r41yzpcdnbdk5jqyyqidnian"; depends=[GPArotation lattice mgcv numDeriv Rcpp RcppArmadillo sfsmisc]; }; + mirtCAT = derive2 { name="mirtCAT"; version="1.4"; sha256="1gfpbx0zay8bkr116fnvcwxgrm6vpcvf25k3advnaj54ad8vw4b4"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-3"; sha256="1djmsffwkicj25ndg07dnid6qj66b1rdw0yrv79jakjfbv71c13i"; depends=[BayesBridge BRugs MASS MCMCpack mvtnorm R2jags Rcpp RcppArmadillo]; }; miscFuncs = derive2 { name="miscFuncs"; version="1.2-10"; sha256="1kqya581n76ff9avhj6xm6nwsbw7zlm4mwy0vyvdlqlf7c381qq0"; depends=[mvtnorm roxygen2]; }; miscTools = derive2 { name="miscTools"; version="0.6-22"; sha256="1sngkl5rwg1vp2xx9a5g2nz2nhwxwv7ni21ww7hyjc8x5mhb42yh"; depends=[]; }; misclassGLM = derive2 { name="misclassGLM"; version="0.2.0"; sha256="1dz36q2gl0q8d0s2rxn28b8ykw31wcdxf91s7ypmjggfdj64i8br"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; miscor = derive2 { name="miscor"; version="0.1-0"; sha256="0kgdsqcqdfi7976qc2f2r6z68z6znrgwgcr801cfkqql8s0wksfj"; depends=[PoisNonNor]; }; - miscset = derive2 { name="miscset"; version="1.0.0"; sha256="0m6gv2w8fj1604wrmcdgz6dpmpkz7j3sppda11klsx0hv1xqr2af"; depends=[ggplot2 gridExtra Rcpp xtable]; }; + miscset = derive2 { name="miscset"; version="1.1.0"; sha256="1gwi7jnqdf2fa8yk8gmcc7dcv72bbdl7yj3yccj3r5jjk41vdp91"; depends=[data_table devtools ggplot2 gridExtra Rcpp xtable]; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; - misreport = derive2 { name="misreport"; version="0.1.0"; sha256="1nys59bik6cnrpdh1azp2y9k201y326hbf5jzv2kilh34p57ilfs"; depends=[mvtnorm numDeriv VGAM]; }; + misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missDeaths = derive2 { name="missDeaths"; version="2.2"; sha256="0gkzq7jpqkfcvc40i0xdjxmwmn1mpd7p4hik4fqz22q3pvmhmmwn"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; missMDA = derive2 { name="missMDA"; version="1.10"; sha256="1wqb5badqcs6yj2c7llbhbssdzg0irjzfcjasfrq1zg0lk82zafj"; depends=[FactoMineR mice mvtnorm]; }; @@ -6870,8 +6915,9 @@ in with self; { mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive2 { name="mix"; version="1.0-9"; sha256="08729y6ih3yixcc4a6m8fszg6pjc0s02iq47339b9gj16p82b74z"; depends=[]; }; mixAK = derive2 { name="mixAK"; version="4.4"; sha256="0aj1x80kxwksn7as6lfncl6ar218hnbcs8vbxwiqp1lh4il74iiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; - mixOmics = derive2 { name="mixOmics"; version="6.1.1"; sha256="0wdl5g0455whlf331j77c0d9vk6qyb03basy5b7svz3zrg15q2qa"; depends=[corpcor dplyr ellipse ggplot2 igraph lattice MASS plyr RColorBrewer reshape2 rgl tidyr]; }; + mixOmics = derive2 { name="mixOmics"; version="6.1.2"; sha256="1f5053xpp674g2dn54rl1yz3knb5i1824dj5v213y6i82m2vygc6"; depends=[corpcor dplyr ellipse ggplot2 igraph lattice MASS plyr RColorBrewer reshape2 rgl tidyr]; }; mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; + mixR = derive2 { name="mixR"; version="0.1.0"; sha256="16rl1ggavs1qfq4i3jm85acd0w2zbiacnvnnim3vi3kqa9i09byy"; depends=[ggplot2 Rcpp]; }; mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; mixcat = derive2 { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; }; mixdist = derive2 { name="mixdist"; version="0.5-4"; sha256="100i9mb930mzvdha31m1srylmpa64wxyjv6pkw1g5lhm1hsclwm3"; depends=[]; }; @@ -6965,7 +7011,7 @@ in with self; { moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="0.9.1"; sha256="1hy36bh9klhdj2yxr3b2rl101lsgfgw61l5zn08brvvh04zvfv31"; depends=[jsonlite openssl]; }; + mongolite = derive2 { name="mongolite"; version="1.0"; sha256="02m9909wkwbyc0w1jhvlib7jmwslq16n49a22bq9pdriaq4rmb8m"; depends=[jsonlite openssl]; }; monitoR = derive2 { name="monitoR"; version="1.0.5"; sha256="1rqcdg4gha5vh3dvxqzr2albi2capm18rkgf79rd769hrk3z09l5"; depends=[tuneR]; }; monkeylearn = derive2 { name="monkeylearn"; version="0.1.1"; sha256="1w0d4cvd1y3wal8r0hg8w08x1zqzkv7ag8nyplmkqv9vwc15qd26"; depends=[digest httr jsonlite tibble]; }; monmlp = derive2 { name="monmlp"; version="1.1.3"; sha256="1f42d8j6jxz8x3yy02ppimbza3b3dn8402373qhj4yizrfk9wkz9"; depends=[]; }; @@ -7019,7 +7065,7 @@ in with self; { msBP = derive2 { name="msBP"; version="1.2"; sha256="1sp8njnvv42q8fkcsjzpfg9p9dzz0hjsn2a6b9kfaymx7zvks2sq"; depends=[DPpackage]; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; - msaR = derive2 { name="msaR"; version="0.1.0"; sha256="0krfass51686ki4wv8nj3kipgsv1v3rs5n6wcdyyqyd1ni8j7mr2"; depends=[ape htmlwidgets]; }; + msaR = derive2 { name="msaR"; version="0.2.0"; sha256="1yj70wxpqbjiwfskb68nx2criz3v426b1wnc9bnsl9cr417zhn9s"; depends=[ape htmlwidgets]; }; msaenet = derive2 { name="msaenet"; version="2.4"; sha256="045f38fzlxsawsssyvp7122dc44hvzyha05js7xzb5zg1pq0i1qv"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; msarc = derive2 { name="msarc"; version="1.4.5"; sha256="1jv364502m6q2w039dmdhwsx5id39jc4xcabyrbwbrgy65kwfspg"; depends=[AnnotationDbi gplots RColorBrewer wordcloud XLConnect]; }; @@ -7030,7 +7076,7 @@ in with self; { msgl = derive2 { name="msgl"; version="2.3.5"; sha256="0lihvgh86r3swfma6msjbsmfc14b1p1h16v6pkd53v5q3dp4asld"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; msgps = derive2 { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; }; - msgtools = derive2 { name="msgtools"; version="0.2.4"; sha256="1m0a6f2q23jm4nl6sp1ympqkiv478q8hgdn5wjfg6gx0nij29jmk"; depends=[devtools digest hunspell poio tibble]; }; + msgtools = derive2 { name="msgtools"; version="0.2.7"; sha256="1lk4r9gdhlfarl5z6a48aih682q7dvwa6lf31119lljpa5gmi92y"; depends=[devtools digest hunspell poio tibble]; }; msir = derive2 { name="msir"; version="1.3.1"; sha256="1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950"; depends=[mclust rgl]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; msm = derive2 { name="msm"; version="1.6.4"; sha256="0h0h9cgavpylbj9692750if1hw7qylhsad549fqjx5l0zqbh3zhy"; depends=[expm mvtnorm survival]; }; @@ -7046,6 +7092,7 @@ in with self; { muRL = derive2 { name="muRL"; version="0.1-10"; sha256="0411vqijsida63jq63qwflr6lvv0rr777z0xba6pn0gpi6khjqqz"; depends=[maps]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; + mudata = derive2 { name="mudata"; version="0.1"; sha256="1906g4mmv3k2pkzq0y2dr1ahlrdvprw8qyxfkmmkll22qn9pmaqa"; depends=[dplyr ggplot2 jsonlite plyr reshape2]; }; muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; multcomp = derive2 { name="multcomp"; version="1.4-6"; sha256="18pd5v288g4d3kyp1wg0fv6ypyhqq9y17fdxkj0ljsj1f7kgp7py"; depends=[codetools mvtnorm sandwich survival TH_data]; }; @@ -7094,7 +7141,7 @@ in with self; { mutSignatures = derive2 { name="mutSignatures"; version="1.2"; sha256="1kbp221lm43a5wiw754yjkd3qidmca20m0i8jlxsqk8ijbp40ky2"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-10"; sha256="1pijr3admnciiwdgxbdac4352m7h08jyvpj7vdd27yx07wp2rri3"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-10"; sha256="16fgmpnym9nhiywqimjgv10swrvs3whp0nlzsw573vv0k6qjmwd2"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; - mvLSW = derive2 { name="mvLSW"; version="1.0"; sha256="0sbiq7ynilbnwggfl4n9s43cvzgavxq9vi4q09cz3v8wf8xjj3kf"; depends=[fields wavethresh]; }; + mvLSW = derive2 { name="mvLSW"; version="1.1"; sha256="0nh3myycz8kagk1sks71i20602r82mh6nxczjnlnal5qwgp6zg80"; depends=[fields wavethresh xts zoo]; }; mvMORPH = derive2 { name="mvMORPH"; version="1.0.8"; sha256="1psjlqx7xb5zlrwcd2q2by8y8ykffxdcskbzb12f643iimlp1l4m"; depends=[ape corpcor phytools spam subplex]; }; mvPot = derive2 { name="mvPot"; version="0.1.2"; sha256="0ni953ncm8h4ap0gjimlxjypgjaj2crlx4vscqi7a158hphahj2g"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; @@ -7107,7 +7154,7 @@ in with self; { mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; mvctm = derive2 { name="mvctm"; version="1.0"; sha256="1naxjh2k3vv4wlpzzx0y2zwvbn4kdqyls8a8qx6bz609ynzay5r9"; depends=[Formula MNM nlme quantreg Rfit]; }; mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; - mvdalab = derive2 { name="mvdalab"; version="1.1"; sha256="18lwhplwp87dcvxzvyah3g98b5jrs91ifwk2hwn5a1gs733va989"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; + mvdalab = derive2 { name="mvdalab"; version="1.2"; sha256="0jgvpspvfj4m79rn8bfb7rihh6w948b7z66qisckdmv6wyxwwr4i"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.1-2"; sha256="1051l10fbr7m9rmrlvj98660f0pn992n3vxiwnhml07wvvdknw3d"; depends=[Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8"; sha256="08p5hxqa8qp8g52w2d3jqbjzrv607fdm80k6vwaz63fxhk8h82wq"; depends=[car heplots]; }; mvmesh = derive2 { name="mvmesh"; version="1.4"; sha256="14yk09s1ym4p9nijxqasd3060hncmr1br7lv9rk9vm96bgi6l1rc"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; @@ -7126,7 +7173,7 @@ in with self; { mvst = derive2 { name="mvst"; version="1.0.1"; sha256="0sv8pd1524pr3xpxplq468dxfd0wipdr41awqwvcljpw5wgl34qa"; depends=[MCMCpack mnormt mvtnorm]; }; mvtboost = derive2 { name="mvtboost"; version="0.5.0"; sha256="06zgx1c2470bh3x6s2awzkxbyij6bvzv23xbvamg77v5pz5bjj6h"; depends=[gbm RColorBrewer]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.0"; sha256="0g0d4lrz854wkd0dz5aiad54i46aqkfhsq6cpbsfv0w5l2kwiqqz"; depends=[gtools]; }; - mvtnorm = derive2 { name="mvtnorm"; version="1.0-5"; sha256="1pc1mi2h063gh4a40009xk5j6pf5bm4274i5kycln38dixsry3yh"; depends=[]; }; + mvtnorm = derive2 { name="mvtnorm"; version="1.0-6"; sha256="0i74s9dl4jf1gln6agra8h38qn9ifd5v0gi13caj1da5nrbmn0aa"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwa = derive2 { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.4"; sha256="09v3cx2scp8fjcjzsdf7k2xl5y2491hbp25mnbjvm6v16hi2g180"; depends=[Rcpp shiny]; }; @@ -7147,7 +7194,7 @@ in with self; { namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; nanotime = derive2 { name="nanotime"; version="0.1.1"; sha256="1jir0hhksa4shfn7paln9s3ccsmmyl70hlsk9q5glwi87j6mhlnn"; depends=[bit64 RcppCCTZ zoo]; }; - naptime = derive2 { name="naptime"; version="1.2.2"; sha256="0jzzs7iphcan6vf1bc3h82gpplnlkw9vhg6366izr2b7vycxafi5"; depends=[anytime lubridate]; }; + naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; narray = derive2 { name="narray"; version="0.1.1"; sha256="0n620wzhmlyjkbbwr0py2xfk0vj59a5zyr4d93iyplcrjg91n6zg"; depends=[abind pryr reshape2 stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; @@ -7178,6 +7225,7 @@ in with self; { needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-5"; sha256="0fdhc0v0b820wfg3sypvya7zhg7mhfmdbfiwn1lj3a2xg01zvc2n"; depends=[]; }; + neighbr = derive2 { name="neighbr"; version="1.0"; sha256="0612nzpryj4xp0ncpvpn56x5n9ammzjp3ysq1rj1fc84h0p7nml3"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-10"; sha256="1snavf90yb12sydic7br749njbnfr0k7kk20fy677mg648sf73di"; depends=[optimbase optimsimplex]; }; neotoma = derive2 { name="neotoma"; version="1.6.2"; sha256="023dpcrhhq8daa0c4viccqs9y19gi05srz4d985diaq7yxjs9vhz"; depends=[analogue httr jsonlite plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.1"; sha256="06lxkk67n5whgc78vrr7gxvnrz38pxlsj4plj02zv9fwlzbb9h6p"; depends=[]; }; @@ -7232,7 +7280,7 @@ in with self; { nlsem = derive2 { name="nlsem"; version="0.7"; sha256="1g5vnqmqq4swnid3601f1cm0q9w9k802394jd3yac95n8sm05i5g"; depends=[gaussquad lavaan mvtnorm nlme orthopolynom]; }; nlshrink = derive2 { name="nlshrink"; version="1.0.1"; sha256="0adnr7g3n3brwlvyix8wa7h59gj036l5anv8abqy80ysmfcmsp0y"; depends=[MASS nloptr]; }; nlsmsn = derive2 { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; }; - nlsr = derive2 { name="nlsr"; version="2017.2.12"; sha256="1fzyfqi6nfzxg0vjlqcvrf6p7qjgvg9qvf4icy13vqs1k70y5v4x"; depends=[digest]; }; + nlsr = derive2 { name="nlsr"; version="2017.2.19"; sha256="0y1qfg042yk855v6i45w00mbmwic1ravlkrd0fbnr8zrvq74iy1s"; depends=[digest]; }; nlstimedist = derive2 { name="nlstimedist"; version="1.0.4"; sha256="10wbkngcx02cjyv188ascrw7aaqg8vvwbr7rgy6q87ch5g7ih35g"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; }; nlstools = derive2 { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; }; @@ -7244,7 +7292,7 @@ in with self; { nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; - nodiv = derive2 { name="nodiv"; version="1.1.4"; sha256="0m12pw4l7lmqn796ac6yn3f9h5h59cv84swb8fk559aw258kpr4s"; depends=[ape picante raster sp vegan]; }; + nodiv = derive2 { name="nodiv"; version="1.1.6"; sha256="1srcmv4mmmsmkk4nbbnmrkv4z19l80agvwlh2q1j7xdi26wpqc5r"; depends=[ape picante raster sp vegan]; }; noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; nomclust = derive2 { name="nomclust"; version="1.00.1011"; sha256="1mzz1bc8gg9lw5aacmicfzjak212hrbq2wchblljcxxjvkkn87w5"; depends=[cluster dummies]; }; @@ -7273,7 +7321,6 @@ in with self; { nortestARMA = derive2 { name="nortestARMA"; version="1.0"; sha256="170dqxaln51snqzqjwagd16f2x4aarqg3xsim0gbvfqlv43sksb7"; depends=[astsa]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; not = derive2 { name="not"; version="1.0"; sha256="1hwrka8a5jygm3zjh5jhzjx2bvdqip7pb5009vkk7k0sp8m760kq"; depends=[]; }; - notifier = derive2 { name="notifier"; version="1.0.0"; sha256="1yi99ja8xdg771fn0brz5qz5p9kcbspwjx272lvjvw26lw7gaw3f"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; novelist = derive2 { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; @@ -7341,7 +7388,6 @@ in with self; { oc = derive2 { name="oc"; version="0.96"; sha256="110pf3rqcab0671djx25jwwl8rbaskcd2lrcv56d786j693y2ash"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; oce = derive2 { name="oce"; version="0.9-20"; sha256="1pckxrkkgb22rrm1q9j2xijnbhk6j260rq8pvmi02l8mdx6l99l5"; depends=[gsw]; }; - ocean = derive2 { name="ocean"; version="0.2-4"; sha256="1554iixfbw3k6w9xh3hgbiygszqvj5ci431cfmnx48jm27h2alqg"; depends=[ncdf4 proj4]; }; oceanmap = derive2 { name="oceanmap"; version="0.0.2"; sha256="0pbwja7m0ng2j2147sgc07v3q80xmj3bwidvqksigklka4zx822q"; depends=[abind extrafont fields mapdata maps maptools marmap ncdf4 plotrix raster sp]; }; ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; @@ -7354,6 +7400,7 @@ in with self; { odfWeave_survey = derive2 { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; oec = derive2 { name="oec"; version="2.2"; sha256="11ldy303xkl7qaqvlzfwr7qxwnz06n39mkjvrj0sca6xzw12lq5d"; depends=[curl data_table jsonlite plyr servr]; }; oem = derive2 { name="oem"; version="2.0.4"; sha256="1n9b8zw4d3ydirrrl4n14as5x8jc10bzfza4zs4gn6ljk5p3lsci"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; + officer = derive2 { name="officer"; version="0.1.0"; sha256="155vzgxrprsnk11m3d8wmvr40pkw1sp99p82g07d6l9d5ix1s28r"; depends=[base64enc digest dplyr gdtools lazyeval magrittr purrr R_utils R6 Rcpp tibble xml2]; }; oglmx = derive2 { name="oglmx"; version="2.0.0.1"; sha256="03lsgdz2pjykzcv7k9r940rgh7qh7vn651nrshx1r0b63mh9cqsj"; depends=[maxLik]; }; oii = derive2 { name="oii"; version="1.0.1"; sha256="0w1afajkr5vly9qi1r2iz1ikbvyvy6hcbc10g8s7g6zi8db5dgf4"; depends=[Deducer gmodels rapportools]; }; okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; @@ -7384,7 +7431,7 @@ in with self; { opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; openxlsx = derive2 { name="openxlsx"; version="4.0.0"; sha256="1jz75kxpbbdw3bf9a49fih4wlk36nki3nr8yq7v9n31qzyb5k3qy"; depends=[Rcpp]; }; opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; }; - operator_tools = derive2 { name="operator.tools"; version="1.4.4"; sha256="1ridxi3pbylb4flfgn371n1v9796rnd1ndxhh6ijyzpysqqmwi08"; depends=[]; }; + operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; ops = derive2 { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; @@ -7396,7 +7443,7 @@ in with self; { optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optextras = derive2 { name="optextras"; version="2016-8.8"; sha256="03wqz16q8kn0ndk241h541fa0g5y0nrfg17vph85cm5xvzdd14cc"; depends=[numDeriv]; }; optiRum = derive2 { name="optiRum"; version="0.37.3"; sha256="1g3kgfwa7ckh45v14qdi3gq9vy0zfpjaffcgpfapyylrsrnspy3f"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; - optiSel = derive2 { name="optiSel"; version="0.1"; sha256="0jr1gi31la8lnz1s7xyk4bc650kf374v2bha638fzg2cx2zqkiif"; depends=[alabama cccp GENLIB kinship2 MASS Matrix nadiv nloptr pedigree pspline Rcsdp stringr]; }; + optiSel = derive2 { name="optiSel"; version="0.3"; sha256="1b4yrijkdxd78wyjjskawahrzj1k3cgh5d7mpcyr2li1hg86k7m1"; depends=[alabama cccp data_table kinship2 MASS Matrix nadiv nloptr pedigree plyr pspline quadprog Rcpp RcppArmadillo Rcsdp stringr]; }; opticut = derive2 { name="opticut"; version="0.1-0"; sha256="0dh7zw8yrzxw3vfzfm776rdhfczmlwfs3fw568s5cc60xsn8fa93"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; }; @@ -7455,7 +7502,7 @@ in with self; { outbreaker = derive2 { name="outbreaker"; version="1.1-7"; sha256="0bq8an4hcs88279nkbn92x5s36i3sb64xqdlcrxy8fdk05w0cmg4"; depends=[adegenet ape igraph]; }; outbreaks = derive2 { name="outbreaks"; version="1.2.0"; sha256="1snycxcllc5vq93ay7xyjw6g4130dvcmja56wvdxixvc5bbv4z1d"; depends=[]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; - overlap = derive2 { name="overlap"; version="0.2.6"; sha256="066zf4i6anklqqmxf06lyfr9w4scw0djqgp8rabgpzwkvk9xgxmb"; depends=[]; }; + overlap = derive2 { name="overlap"; version="0.2.7"; sha256="1v7i3p8mmhvnxd9h1g6zprphjgs2nfh7ffkyj7vjbkhfsixp9fpz"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.4.0"; sha256="00rn55wvcj32qgjbjplaq32k2vxzrdlbp8dh7scyw78wyn8bdv2c"; depends=[ggplot2]; }; owmr = derive2 { name="owmr"; version="0.7.2"; sha256="0206i5zzmfjdd43qziis6kqc0zsvn0l7v5sspjrywjxw2gyjfmwb"; depends=[httr jsonlite magrittr]; }; oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; @@ -7493,7 +7540,7 @@ in with self; { pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; - pairwise = derive2 { name="pairwise"; version="0.3.1"; sha256="1p6cclq9dm8zqs6m1r1mlq80cgasrmrv5sjnqj6yw5wwn4rxry6w"; depends=[]; }; + pairwise = derive2 { name="pairwise"; version="0.4.1"; sha256="06g6ma8wfn3zxyxhbj3bi851aflddsdisw4rwvg0w6l3w2q9mvnf"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-25"; sha256="0wpv22db63xkgjw0nwa39clgrr2finxvl0a510hkc54ijqjx9ksh"; depends=[binMto boot coin MASS MCPAN mcprofile mratios]; }; palaeoSig = derive2 { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; @@ -7536,7 +7583,7 @@ in with self; { parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; parsec = derive2 { name="parsec"; version="1.1.2"; sha256="1hf3c23rnxckw4s2vqzbhkjgiir1nv1811saximj0mbih9w2vqpf"; depends=[]; }; - parsedate = derive2 { name="parsedate"; version="1.1.1"; sha256="0mr97rw4fzg2v9dh5d4x0b76d5s56gi6zilq69yjhbx78w46apzc"; depends=[]; }; + parsedate = derive2 { name="parsedate"; version="1.1.3"; sha256="0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"; depends=[]; }; parsemsf = derive2 { name="parsemsf"; version="0.1.0"; sha256="0ijnnajcr7zyh0c1k6bz9qa4fkcly1fd44x3qj7mhlx58gnq4sa4"; depends=[dplyr lazyeval RSQLite stringr tidyr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partialAR = derive2 { name="partialAR"; version="1.0.5"; sha256="1d8nbv3rkf0p4vg8mlb1l5cqzgsqqhigwiq2bnd4npak6fq6syvg"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; }; @@ -7546,7 +7593,7 @@ in with self; { partitions = derive2 { name="partitions"; version="1.9-18"; sha256="1brzvk2zbrh0s4vbaiib6zkpcyx7ghc6ws36h3diz5nxbx3g95ik"; depends=[gmp polynom]; }; partools = derive2 { name="partools"; version="1.1.5"; sha256="062rnq35cbzyr6mdpq4w88bxd6c2pzbghxan6j11pipyzvv7qsj3"; depends=[data_table pdist]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; - party = derive2 { name="party"; version="1.2-1"; sha256="1vi0hisph0xscj80ch8gcdp9vrh2k8z5msd2j9p5mvr0f5i5hr7d"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + party = derive2 { name="party"; version="1.2-2"; sha256="0rmvscgmbligg23djyph54cz5r8xkmmrn04vd3r7pwy1qarah9fi"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.1-1"; sha256="0cl3ir54pafjhk1cvyzx1a8a244x0qa5lky47m7fx1fdj0k7dx6r"; depends=[Formula survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; pass = derive2 { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[lars MASS ncvreg]; }; @@ -7566,7 +7613,7 @@ in with self; { pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; pavo = derive2 { name="pavo"; version="1.0.0"; sha256="0xi9sb36xc6h8j4h4b46imwy936wi8vlqsv4mfkjka34bn0q7afr"; depends=[geometry mapproj rcdd scatterplot3d]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; - pbapply = derive2 { name="pbapply"; version="1.3-1"; sha256="053i92j0ch3msywapdia08mmk1w8bhcs6x7cl0han2r9sfliwkzw"; depends=[]; }; + pbapply = derive2 { name="pbapply"; version="1.3-2"; sha256="1sdmjlnwxb99f95g5v8k8mirrkzw99yig377v0qi9lzwjgd6fqqr"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[rootSolve survival]; }; pbdBASE = derive2 { name="pbdBASE"; version="0.4-5"; sha256="0i7rav197787snhw2l5pyb2x0i9d1gl9d7lks2bk0dcxr0ndy9gm"; depends=[pbdMPI pbdSLAP]; }; pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-1"; sha256="0vr3dvvhr8j6xvdf308nn37y0lkl2ysm93yf0h7rclvqvsk1pf66"; depends=[pbdBASE pbdDMAT pbdMPI]; }; @@ -7723,9 +7770,9 @@ in with self; { pid = derive2 { name="pid"; version="0.36"; sha256="1w6h09ddq8rv7k5xl4v6nhlkm0vnmim57mg0dzk2dv9dc4v8i141"; depends=[DoE_base FrF2 ggplot2 png]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="1.2.1"; sha256="0c705ngyj2pf24vvqdld5rnf875pw64gs64l9f7nylbfrax39kbv"; depends=[lavaan lme4 nlme pbkrtest]; }; pim = derive2 { name="pim"; version="2.0.0.2"; sha256="1fjnll2lfgdfak9427rh343y80awjzwpy46v33kpd6niz41zmra8"; depends=[BB nleqslv]; }; - pinbasic = derive2 { name="pinbasic"; version="1.0.1"; sha256="16sja6f8ivixrqj83xjgfxrvql6rzhkr0kd9li9spzhs20r4yshl"; depends=[doParallel fastcluster foreach ggplot2 iterators lubridate reshape2 scales]; }; + pinbasic = derive2 { name="pinbasic"; version="1.1.0"; sha256="0ncbgkpgzp6w856y7ab0drci92rc9mx0j900vxd8ir69c00cm348"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; }; - pingr = derive2 { name="pingr"; version="1.1.0"; sha256="0j03qcsyckv3zh2v4m8wz8kyfl0k8qi71rm20rc0spy1s9ng7fcb"; depends=[]; }; + pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; }; pinnacle_API = derive2 { name="pinnacle.API"; version="1.92"; sha256="1a2s33sizg9q6iml56hbbs1c7hx5lz7v7hplhs0nv05vrh8cg9zm"; depends=[dplyr httr jsonlite RCurl rjson uuid XML]; }; pipe_design = derive2 { name="pipe.design"; version="0.4"; sha256="00znnjqvppvn0qmrxkksiljgd51mf1x5zkmib43myckzwp5cap3i"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.1"; sha256="0ixfj52nd9785ny78wgsyq7srygsj3yg3p95pcb4lrrammchqygk"; depends=[]; }; @@ -7748,7 +7795,7 @@ in with self; { placement = derive2 { name="placement"; version="0.1.1"; sha256="1narjb90sb5prvzfv2x30bz8y9aq8hqggza91ghwi47m99vm1dg6"; depends=[base64enc digest jsonlite RCurl stringi urltools]; }; plan = derive2 { name="plan"; version="0.4-2"; sha256="0vwiv8gcjdbnsxd8zqf0j1yh6gvbzm0b5kr7m47ha9z64d7wxch6"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; - planor = derive2 { name="planor"; version="1.0-1"; sha256="1wi1s41wwk4zi5sqzm5flaphrpffqv8bhsgzdpknmnhp1nn0hllv"; depends=[conf_design]; }; + planor = derive2 { name="planor"; version="1.3-6"; sha256="0anli2nrsfq9wzk4vgn7lfr6mi01d70ffb631fxrgh45p36im7dw"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; plantecophys = derive2 { name="plantecophys"; version="1.1-8"; sha256="02425j4pgwqadg2zn7vyl4741panif236m89zm36p580chp23wir"; depends=[]; }; plaqr = derive2 { name="plaqr"; version="1.1"; sha256="0hkzfxph2lacrd4npqvf4pyaldr1z56hlfbj3gi7qjlflxqnv3xp"; depends=[quantreg]; }; plater = derive2 { name="plater"; version="1.0.0"; sha256="0nbkfqrz78zgf06lsfzmwj50lfbq3dvi01j4rlbb6dwamx2cn3sf"; depends=[dplyr]; }; @@ -7790,7 +7837,8 @@ in with self; { plsgenomics = derive2 { name="plsgenomics"; version="1.3-1"; sha256="0vddhzqfix8q692mdls227m2l6zjzbjwp1ia5j9shy71ycg2fzn9"; depends=[boot MASS]; }; plspm = derive2 { name="plspm"; version="0.4.7"; sha256="0iy4qw4zjgqxg93a827qjcm32yipmnrl4gzn4hmskjd4khm9ngwd"; depends=[amap diagram shape tester turner]; }; plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; - plspolychaos = derive2 { name="plspolychaos"; version="1.1-0"; sha256="1qq0f95ndpiykbizyivjcbjbbmqqns08i1dkjn3n7k2r9130z8rx"; depends=[lhs MASS]; }; + plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; }; + pltesim = derive2 { name="pltesim"; version="0.1.1"; sha256="0xqvs4lax8r2avwpdpf4p49dkwghiqbqc93brz7l1qma6ih0yfrs"; depends=[coreSim ggplot2]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; plumber = derive2 { name="plumber"; version="0.3.1"; sha256="0li34ldwc8qi7jg37pqaa4b5ql6ybci9a3wh2a48gb8nyb380r2b"; depends=[httpuv jsonlite R6 stringi]; }; plumbr = derive2 { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; @@ -7803,8 +7851,8 @@ in with self; { pmg = derive2 { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[foreign gWidgets gWidgetsRGtk2 lattice MASS proto]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.0.0"; sha256="0r1yw65ixm3zjpiwg800rfwr1p26i6apv4332pgfl84hj5vvp3ws"; depends=[mvtnorm Quandl]; }; pmlr = derive2 { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; - pmml = derive2 { name="pmml"; version="1.5.1"; sha256="1w53lkzsgi8d3h89zpr4la3r52mhqxr6a7hazhsmvwhjfkz874ki"; depends=[survival XML]; }; - pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.0"; sha256="17dhgpldwadsvm25p8xwqsamcn1ypsqdijy2jia048qqmsy4ky86"; depends=[]; }; + pmml = derive2 { name="pmml"; version="1.5.2"; sha256="0yp9xhgsdfbkxl5xxzw6n5v9zbpn5819lynj1glzi32bfzjfiwk3"; depends=[stringr XML]; }; + pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.1"; sha256="1cxmp3fgsf3z71v6qpd9l9ilgda5knan7vqifxpgm8m7a30sp3f3"; depends=[]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; @@ -7825,14 +7873,14 @@ in with self; { poliscidata = derive2 { name="poliscidata"; version="1.2.0"; sha256="0vn9wdlh3bi24mcq0r4ani2b0hhlg1za1z6fw8ikz7952gpacqk8"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; pollen = derive2 { name="pollen"; version="0.50.0"; sha256="1f6bjh7vkwyma8jzigdcijazmzr2mhnmwmaf135lx81d044xj2zr"; depends=[dplyr lubridate purrr]; }; pollstR = derive2 { name="pollstR"; version="2.0.0"; sha256="0lcxhi1mazs8nh9hbbqyqx4axn5lji5fnp0kxrjwjxmzf59nksj8"; depends=[httr lubridate purrr stringr]; }; - polmineR = derive2 { name="polmineR"; version="0.7.0"; sha256="13ncdqn1wh5rcad79l0d388qnyi3171djfbz3qjkzw05n3q8rk57"; depends=[data_table DT foreach Matrix R6 slam tm]; }; + polmineR = derive2 { name="polmineR"; version="0.7.1"; sha256="189zfqcw9w1i1z14l2rgkzqali0arkiq7k770xhzdrahw1whcsc7"; depends=[data_table DT foreach Matrix R6 slam tm]; }; polspline = derive2 { name="polspline"; version="1.1.12"; sha256="0chg5f6fq5ngjp1kkm4kjyxjc3kk83ky2ky5k7q3rhd8rkhd4szw"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.5-2"; sha256="1j28ia53za3sh9q7q1g5bnmlb5mbzf44bcwzv0919lvkw01f2lvj"; depends=[sp spatstat]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-4"; sha256="05kvj475zhlrmp7rm691cfs28igp4ac2cn2xxf7axx09v1nq33db"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-3"; sha256="1y4kzb1p3aw7ng8mv1hszpvb5hwwxy4vg34mhhk705ki4jy8jgvp"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive2 { name="polyapost"; version="1.4-2"; sha256="0nr8mw0k79kz5zd1k81kz0i940vmlzqqscn1z1yaik0rx8i7mhs7"; depends=[boot rcdd]; }; - polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-0"; sha256="0yb119y0a2xjsijxbrxgksnhf3m997dgp9d57wghq68dsfjp3hf3"; depends=[lhs MASS]; }; + polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-1"; sha256="1kw5c4dmgpkbk2a30hh5n6xqpnbh6q2swxsdjkmcmhkwrzm4ylm2"; depends=[lhs MASS]; }; polyclip = derive2 { name="polyclip"; version="1.5-6"; sha256="1ypwvgd5z61md539z7ndmpl8vaifsjbm231n08zsxskskj1fid7y"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; @@ -7840,7 +7888,7 @@ in with self; { polysat = derive2 { name="polysat"; version="1.6-0"; sha256="180hf1m2pd9jcz02q0jq3s5sv5h73qc20w3b2sx1psdbyzdk9006"; depends=[]; }; polywog = derive2 { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomp = derive2 { name="pomp"; version="1.10"; sha256="1v4mkgn0vn83kgl2la94gnc5g1xxkk1h5gxvjyzkqgkakaigwmsx"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; + pomp = derive2 { name="pomp"; version="1.11"; sha256="1z66q3l1p7dmds0160w93q31hsxq4fj7bwfyd74d166yg0wfia8x"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; pooh = derive2 { name="pooh"; version="0.3-1"; sha256="0fn711jyn18byfc2nq3y154k8rb39vpnfw1a0xw73pqp1cwd2i73"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; }; @@ -7851,7 +7899,7 @@ in with self; { popbio = derive2 { name="popbio"; version="2.4.3"; sha256="1c34izyp6gpic3yv1rhg1snv2irw0bj9r1w9b892l7x0mxxmn2bl"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="0.2-3"; sha256="0r3qdvwjwqzqxk3zp9vfzxwmc5fhjzn0ka91b37g62nanwxiyayw"; depends=[expm]; }; popgraph = derive2 { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS Matrix sampling sp]; }; - poplite = derive2 { name="poplite"; version="0.99.16"; sha256="0yp1hfda2k6c5x0gbcfxj9h6igzx3ra05xs7g88wjz76yxp3wb6w"; depends=[DBI dplyr igraph lazyeval RSQLite]; }; + poplite = derive2 { name="poplite"; version="0.99.17.3"; sha256="0fqkwxlzj92rh187wns7zrygsgch1gw3l8kmnpvc59gdbk1wbbi7"; depends=[DBI dplyr igraph lazyeval RSQLite]; }; poppr = derive2 { name="poppr"; version="2.3.0"; sha256="0zhmsx23fjjl8zy7s0gyzd0br4imdl2hfgk0g9v9p2ff72xg046d"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn reshape2 shiny vegan]; }; popprxl = derive2 { name="popprxl"; version="0.1.3"; sha256="1l842zgn04s8ghbcp8s2lzg7lgc809xd7hg9crnyp23c2cr0jlvi"; depends=[poppr readxl]; }; popsom = derive2 { name="popsom"; version="4.0.1"; sha256="1qw6b00mz9i842askixc0288i41v8dfjwc58pa3cbgf6fhfjva9z"; depends=[class fields som]; }; @@ -7894,10 +7942,11 @@ in with self; { precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precrec = derive2 { name="precrec"; version="0.6.2"; sha256="100zr5932vm1rs359nzq4cxbx924az5d8zl9h7720fd5sgy4av7f"; depends=[assertthat ggplot2 gridExtra Rcpp]; }; predatory = derive2 { name="predatory"; version="1.1"; sha256="18nv8riw380acvgb8iz771wzdgrmkrwcvdxbxhkbczcdhgw1p0ig"; depends=[readr stringr]; }; - prediction = derive2 { name="prediction"; version="0.1.1"; sha256="0ys0pds2x8nhkf45dp5f0pmp64al670w7xgr5hbifmykn2ivdiqr"; depends=[]; }; + prediction = derive2 { name="prediction"; version="0.1.10"; sha256="1za32spd6qg63mi5dvkw54k24f5s4a10p2rkfgzjzqxjb9rd265h"; depends=[]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; + prefeR = derive2 { name="prefeR"; version="0.1.1"; sha256="1wgbwbmghsnc2cargwndda0xhcdswvzd0nkjq5g895kl8zcwgpyf"; depends=[entropy mcmc]; }; prefmod = derive2 { name="prefmod"; version="0.8-33"; sha256="0wklp3djy3z8lq0vrjrzqha6r8z00jwdm6d9ffyq5vhimmbirzj8"; depends=[colorspace gnm]; }; prepdat = derive2 { name="prepdat"; version="1.0.8"; sha256="19rxyss96cmjhzm69f6l1cd3vkw3wskzhxnbmrz4546x00gf9g5v"; depends=[dplyr psych reshape2]; }; preprocomb = derive2 { name="preprocomb"; version="0.3.0"; sha256="08dhzil8prmjb6if0yba9pjncfxf5zzvlrrabva7c5jhny806c5g"; depends=[arules caret clustertend DMwR doParallel e1071 foreach randomForest zoo]; }; @@ -7936,7 +7985,7 @@ in with self; { prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; }; profdpm = derive2 { name="profdpm"; version="3.3"; sha256="07lhjavrx4fa5950w928mfpddmmnmvdapl5n6mv49m8h3bxs4nmy"; depends=[]; }; profileModel = derive2 { name="profileModel"; version="0.5-9"; sha256="1p9b9jr5842im195d60ja82pp7vbk85vs8b0r3fnf62j4b92aky9"; depends=[]; }; - profileR = derive2 { name="profileR"; version="0.3-3"; sha256="0yc0bgcv8g4qm777l8czvwcw4gsrsgc1f2qgllyid6wsnvw25x6v"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; + profileR = derive2 { name="profileR"; version="0.3-4"; sha256="1vinqddhd4jbncn37rbypja7ili3kwmj2sacgf491s94zil4ijik"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profilr = derive2 { name="profilr"; version="0.1.0"; sha256="0rw5cjvvrgsdmhgrsaw4skfdk8h488b6mkmibgjj3dd3x0j3caq6"; depends=[]; }; profmem = derive2 { name="profmem"; version="0.4.0"; sha256="1nnk145hzr447z9frk3c58xks3jp0cdl7cv8schqnyjxqlv967g9"; depends=[]; }; profr = derive2 { name="profr"; version="0.3.1"; sha256="1w06mm89apggy6wc273b2nsp95smajr8sf3dwshykivv7mhkxs5d"; depends=[plyr stringr]; }; @@ -7982,7 +8031,7 @@ in with self; { psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-17"; sha256="1n3mhj6q7a1v2k8xkbwji27dihcy3845wp50sx14hy4nbay5kf1r"; depends=[]; }; - pssm = derive2 { name="pssm"; version="1.0"; sha256="1af5zvznh04vz5psbmq3xxclm2zh4gl4gxi1ps6aqmiqjpm57dwq"; depends=[abind MASS MHadaptive numDeriv]; }; + pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; psych = derive2 { name="psych"; version="1.6.12"; sha256="0ijz9gcc52byzmrw4iz976lgayp1wmn5b9v36bras14fwlwri0ky"; depends=[foreign mnormt]; }; @@ -8025,7 +8074,7 @@ in with self; { qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qPCR_CT = derive2 { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; }; qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; - qap = derive2 { name="qap"; version="0.1-0"; sha256="0fc6c3pzlm79nqs9qkngs8m0y8y9syhgilfsav9bbi6ylfhlmdh0"; depends=[]; }; + qap = derive2 { name="qap"; version="0.1-1"; sha256="0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"; depends=[]; }; qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; }; qcc = derive2 { name="qcc"; version="2.6"; sha256="0bsdgpsqvkz2w1qanxwx8kvrpkpzs9jgw8ml2lyqhmhqbxyg125r"; depends=[MASS]; }; qclust = derive2 { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; @@ -8039,7 +8088,7 @@ in with self; { qgraph = derive2 { name="qgraph"; version="1.4.2"; sha256="1pp3dwrmp7j4rv0djbypnwjb26gji5fhqw4iwqbnxyi86m47z7z7"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; - qicharts = derive2 { name="qicharts"; version="0.5.3"; sha256="1mqlj8350i7llp76qhpzzisd6vryrnx9wmdazj7xbdg5666qdz45"; depends=[ggplot2 ggrepel lattice latticeExtra scales]; }; + qicharts = derive2 { name="qicharts"; version="0.5.4"; sha256="0lq9faksp18mgb6pa7qhbm9frd6f4675623d797snvnm67aiy8fa"; depends=[ggplot2 lattice latticeExtra scales]; }; qiimer = derive2 { name="qiimer"; version="0.9.4"; sha256="0argspi9pin2gjsg0qkl28hj3bw8svfab1cy410zlq76qdnmg7df"; depends=[pheatmap]; }; qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; }; qlcData = derive2 { name="qlcData"; version="0.1.0"; sha256="00xfr7dywvadyhs2z32za06fzdzmm20sn31grin0b3xw5qndai0f"; depends=[stringi yaml]; }; @@ -8158,7 +8207,7 @@ in with self; { rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; rMR = derive2 { name="rMR"; version="1.0.4"; sha256="1md0xkl87qqylwh5zbx9awa5i4f573v4glgaf4k8h5ls4icaaav4"; depends=[biglm]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; - rNOMADS = derive2 { name="rNOMADS"; version="2.3.2"; sha256="1dklyda8xagg643c67ii9hx2lvwkc9xaxlkvigs9dv1bkzbrw9gs"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; + rNOMADS = derive2 { name="rNOMADS"; version="2.3.3"; sha256="186pcxdfkp24aff3qldkhbcxydifg092w3jadahfrd30d6gyfvp8"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; rPlant = derive2 { name="rPlant"; version="2.16"; sha256="0bi7p8w6v8gys8rab5f0c11r0rsp14nsf4mmm2bsz8kxfprh6vdp"; depends=[RCurl rjson seqinr]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.1"; sha256="0yk61ck2br81cd40yvqxrzi9s680ii26wbl0wjdam04dyf0vh1cv"; depends=[mvtnorm ssanv]; }; rPref = derive2 { name="rPref"; version="1.2"; sha256="19b6rycz73rz3nxymb52gfddqsxprkxazwa8pb75vckk13q1cmj0"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; @@ -8201,14 +8250,14 @@ in with self; { ramsvm = derive2 { name="ramsvm"; version="2.0"; sha256="1q6ag3x1mgkyw8nsxghhk9yrcr0ybwilsx1yzg98bqsmxrrqk17q"; depends=[doParallel foreach]; }; randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; - randgeo = derive2 { name="randgeo"; version="0.1.0"; sha256="1jjblzqm45yxz5pvkg2mhv891vxlw0c3ii8y6gah680g09xgwjxx"; depends=[]; }; + randgeo = derive2 { name="randgeo"; version="0.2.0"; sha256="056c522zw2x4ab7z2bpkw9byfn1gzsfavbjaxdgwi4n934f46h14"; depends=[]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-12"; sha256="1i43idaihhl6nwqw42v9dqpl6f8z3ykcn2in32lh2755i27jylbf"; depends=[]; }; randomForest_ddR = derive2 { name="randomForest.ddR"; version="0.1.1"; sha256="0q4xjh7qqmd4slxwd1z5mnpn4y3vx1vbn6v060zbd0afibpcw92b"; depends=[ddR Matrix randomForest]; }; randomForestSRC = derive2 { name="randomForestSRC"; version="2.4.1"; sha256="17a59jc8h7bfgz9gpisc144fyas7da1c1lab1x8wasfilgkg08z2"; depends=[]; }; randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; - randomLCA = derive2 { name="randomLCA"; version="1.0-10"; sha256="1h1fxymdiycxn90lipzb190xakf7hlbn6nwxsbfwcz8278xkcn4g"; depends=[boot fastGHQuad lattice Matrix]; }; + randomLCA = derive2 { name="randomLCA"; version="1.0-11"; sha256="076sjq74dhdr9vqlg8kns4apvkrv9qpvkixqkrkz2l7215k79fz7"; depends=[boot fastGHQuad lattice Matrix]; }; randomNames = derive2 { name="randomNames"; version="0.4-0"; sha256="0419kjgin5yf58765rc6m8wcbp26yggkiarprzissqaf9sp0sh4p"; depends=[data_table]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.0.0"; sha256="15qgfzwc2cli2gjwzj1pf4h16qciiinihd9ib6ph74jbkpimyh11"; depends=[colorspace stringr V8]; }; @@ -8264,6 +8313,7 @@ in with self; { rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.3"; sha256="0bksyjbxdllgaqkhpz29isslqkpp3y4xl3wqhpjy881lhlw40y1j"; depends=[MASS plyr]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.2"; sha256="0izvxbkjmhyp8jz4mlwa5grdgcd8q9pdc3jwrccby0xz0f5gw2x0"; depends=[MASS plyr]; }; + rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; rcdd = derive2 { name="rcdd"; version="1.1-10"; sha256="16j98x87dsjd7zj5pp9i5lc0a3ypr98zjwydpyhpl3zc0vnbbild"; depends=[]; }; @@ -8272,7 +8322,7 @@ in with self; { rchallenge = derive2 { name="rchallenge"; version="1.3.0"; sha256="1qn2pzch5yk771jsjcsmfsi5vddfb2w50vfqlkmsl6nf5z6sdq9k"; depends=[knitr rmarkdown]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rcicr = derive2 { name="rcicr"; version="0.3.4.1"; sha256="1sa13sbhx64cf8szr2811iq4a1asb8d3k0igxw6fbssij2lwbxzp"; depends=[aspace dplyr jpeg matlab scales]; }; - rclimateca = derive2 { name="rclimateca"; version="0.1"; sha256="0pnmazi33lvmccb1x2rkac0cwp8rf1p0659dfx9718vkdlgkvlgz"; depends=[digest httr lubridate prettymapr reshape2]; }; + rclimateca = derive2 { name="rclimateca"; version="0.2"; sha256="1haczzx0hbah4vzbp10rih2yqq1x1s6w9f66xgk485sgyvkg5855"; depends=[digest httr lubridate prettymapr reshape2]; }; rclinicaltrials = derive2 { name="rclinicaltrials"; version="1.4.7"; sha256="1y9naqi2bylihkasvfndkpwslnm393709645jwvwplzaaviy0hf7"; depends=[httr plyr XML]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.2.1"; sha256="04gh0drvkikn91i5zmpixhrhyjnsyxwz8k8bx4kgwwrmh1dc7f2s"; depends=[callr clisymbols crayon digest withr]; }; rcompanion = derive2 { name="rcompanion"; version="1.4.0"; sha256="1brl9q421q8n5lab5wlp0hzgzdldwr2b9sa8qngkk3nfvzy1jdwx"; depends=[boot BSDA coin DescTools EMT FSA hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; @@ -8322,7 +8372,7 @@ in with self; { rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; - recexcavAAR = derive2 { name="recexcavAAR"; version="0.2.2"; sha256="050klwldr8jzn0dwwh7yb0yzjckbdc4z7phd0rp8y8d5ah0n8bn2"; depends=[kriging Rcpp]; }; + recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; recmap = derive2 { name="recmap"; version="0.5.16"; sha256="0fq0l483mmb04n2qj2msngw6midwjrq5fjdh3sgzy5fhj5bcd288"; depends=[GA Rcpp sp]; }; @@ -8332,7 +8382,7 @@ in with self; { recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; }; recosystem = derive2 { name="recosystem"; version="0.4"; sha256="1h8147x9caxxprxpgzk7qj9nkafbi34zhcnaksdpv95k7vnhs4ps"; depends=[Rcpp]; }; - red = derive2 { name="red"; version="0.2.0"; sha256="0vpwx8lv0jhddcw2cypdhvchgrrkxx8l70yhsp5415mgdkmpp5x2"; depends=[BAT dismo geosphere igraph maptools raster rgdal rgeos rJava sp]; }; + red = derive2 { name="red"; version="1.0.0"; sha256="07m48znd0dm2fd4jagjrn2fqx2wr1hzvx2rljlkpl0hkkljcz8lj"; depends=[BAT dismo geosphere igraph jsonlite maptools raster rgdal rgeos rJava sp]; }; reda = derive2 { name="reda"; version="0.3.1"; sha256="0313x4vm0jm0lgzspv0ldsblmjgy13dqbsafpikkh603k5pkq1js"; depends=[ggplot2 splines2]; }; redcapAPI = derive2 { name="redcapAPI"; version="1.3"; sha256="08js2lvrdl9ig0pq1wf7cwkmvaah6xs65bgfysdhsyayx0lz5rii"; depends=[chron DBI Hmisc httr stringr]; }; reddPrec = derive2 { name="reddPrec"; version="0.3"; sha256="01dsgd28ps1f32l3ppz4fbzihs5i79zb1nqg9r3b21fsx1ly44d6"; depends=[snowfall]; }; @@ -8356,7 +8406,7 @@ in with self; { regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; regress = derive2 { name="regress"; version="1.3-14"; sha256="0qnks28fr8siq95iiiqyvz82cbdg14i18rj7g9rqyjhiam12fshl"; depends=[]; }; regsel = derive2 { name="regsel"; version="0.2"; sha256="0wwwpawqsqimaldy0zxnqsy23nwp30ypa5dnrnndwhbs4qz99c9w"; depends=[elasticnet glmnet]; }; - regsem = derive2 { name="regsem"; version="0.5.0"; sha256="0ajva492a0z0q1ixdh24w10vbq7fknn66cyjzla5aqcmc5gggp7g"; depends=[lavaan Rcpp RcppArmadillo]; }; + regsem = derive2 { name="regsem"; version="0.7.0"; sha256="1niwal7dn99kkjm1dj03jfa3lkj747ihy29ay7jcwzin7nnkw9c5"; depends=[lavaan Rcpp RcppArmadillo]; }; regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; @@ -8473,6 +8523,7 @@ in with self; { ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; + ridge = derive2 { name="ridge"; version="2.2"; sha256="01yldzzlqg0xqha31l3py62lyq7fw5xfsbmz6ifzff24gqsf029x"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; }; riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; }; rinat = derive2 { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[ggplot2 httr jsonlite maps plyr]; }; @@ -8516,7 +8567,7 @@ in with self; { rmapshaper = derive2 { name="rmapshaper"; version="0.2.0"; sha256="0s5av8hic3b61ch6skvcxkpn9s2r0ylfxilxg8i2dvg4dk13qkna"; depends=[geojsonio geojsonlint readr rgdal sp V8]; }; rmarkdown = derive2 { name="rmarkdown"; version="1.3"; sha256="1vvxyf3zhyxx6k697lia299456hryp8nh3zr0fc27f3107a8mcjf"; depends=[base64enc caTools evaluate htmltools jsonlite knitr rprojroot yaml]; }; rmatio = derive2 { name="rmatio"; version="0.11.0"; sha256="0cmlh16nf3r94gpczq0j46g4dgjy9q1c647rqd9i14hvfrpxzcfa"; depends=[lattice Matrix]; }; - rmcfs = derive2 { name="rmcfs"; version="1.2.2"; sha256="1fx50z8pb5z1i1gzs4v194k9fdiq40ny5ridxym9ykgqf82ncvsa"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; + rmcfs = derive2 { name="rmcfs"; version="1.2.3"; sha256="14brfil6s9hi0rnw13g8d9xvgnyblqbwvs3iwwwb38lzl8az5rqs"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.1.0"; sha256="0hrlamr527r02vj86xsip5n7gilrb8y33fy0xi1lkc66hf714vgw"; depends=[mnormt psych pwr RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; rmdformats = derive2 { name="rmdformats"; version="0.3.1"; sha256="0x0vh1mdxb00k6c2m09szpbx4rqhch8p5zslb5jmbbacslicr1sq"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; @@ -8527,6 +8578,7 @@ in with self; { rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rmngb = derive2 { name="rmngb"; version="0.6-1"; sha256="1wyq8jvzqpy1s6w0j77ngh5x2q7mpj0ib01m8mla20w6yr6xbqjk"; depends=[Hmisc]; }; rmp = derive2 { name="rmp"; version="2.0"; sha256="1cs5ylh5z9mfj3r0yvxxd38ksna2dxk9nnfgqkry1kxibnd1b4ff"; depends=[]; }; + rmpw = derive2 { name="rmpw"; version="0.0.1"; sha256="0h5h77hh6v6nfhivmrs5dyks9krwqyh32kmp0mlwialrpshs0hp3"; depends=[]; }; rms = derive2 { name="rms"; version="5.1-0"; sha256="1ibbpdclxc5vayl7hz176xc03snklx6ymiqzmpvi09y3bv92qnrx"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; @@ -8561,6 +8613,7 @@ in with self; { robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; robustHD = derive2 { name="robustHD"; version="0.5.1"; sha256="14v6l0appy206zx1jcv7m14r2z9g12dpkm6zxzv756rca2yj8fp5"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive2 { name="robustX"; version="1.2-2"; sha256="0pgfq78qd8s40ciqval01bwajy6zfdjms1lbh0b5g0rww6920s6f"; depends=[robustbase]; }; + robustarima = derive2 { name="robustarima"; version="0.2.5"; sha256="0mqlp4xmma74rgwb6rihbzs5nillcnddl6smlxmm8lq1wba27jdj"; depends=[splusTimeDate splusTimeSeries]; }; robustbase = derive2 { name="robustbase"; version="0.92-7"; sha256="13xz4am7y0s0kl5bmbcw3dlhl7ji8h9sjx56wsgmj6r9n35nrggw"; depends=[DEoptimR]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; @@ -8591,7 +8644,7 @@ in with self; { rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.5.0"; sha256="1mwvqgfc6l1bqa8ik9nx6mk380hnrplbls8hc5yign8wqlw8rql5"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.1.4"; sha256="1p15pmhv52fg8lc0c0yiadc7s0q9s0dz9q6d8544msaxsjwfkpxp"; depends=[abind digest foreach jpeg png rgdal rjson sp]; }; - rospca = derive2 { name="rospca"; version="1.0.0"; sha256="09rlkzajgs7sqdj5lwb0bs0vx6676qwqcwx1wawvg40npfw40l0h"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; + rospca = derive2 { name="rospca"; version="1.0.1"; sha256="16kd0nr76h4h64rz402k2pqz1qvczzga72wd7f16z713cwz2s2hn"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; rotationForest = derive2 { name="rotationForest"; version="0.1"; sha256="07my0i84jvmjxvg2ifvsrbc0r5z4s32xi0vfdwrkhhdzdn87h527"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.5"; sha256="1zksh6hyxdkm0lvvrld6dgkmhszn6wsjrjzr2xbn3af3gsvsydaa"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; }; rotl = derive2 { name="rotl"; version="3.0.1"; sha256="18dzg3ysy6aphwbj1c4hzr1qn8q3vvr5r0qnpmidr5rwyhc78phb"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; @@ -8610,10 +8663,10 @@ in with self; { rpdo = derive2 { name="rpdo"; version="0.2.1"; sha256="0n2lpnphnb5h7y9jszq4m15wymwgv7v2pw5fwbflr0ihvx3i3iac"; depends=[curl datacheckr dplyr lubridate magrittr readr stringr tidyr]; }; rpf = derive2 { name="rpf"; version="0.53"; sha256="16d28i8s7f6ag1jvxw1ns8pi3s1rbxp9z9l13bxsm6cd6kq5jgrq"; depends=[mvtnorm RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.5"; sha256="0hjfzikaryr55xjfw7zjdby4ja59rxq9ikycgbpapvpy2q9py5yp"; depends=[getPass RApiSerialize Rcpp uuid]; }; + rpgm = derive2 { name="rpgm"; version="0.1.3"; sha256="1d2q1g63w2vgq74aminllgsrzci224n1n9q0gw8230y0xgh3ih82"; depends=[]; }; rphast = derive2 { name="rphast"; version="1.6.5"; sha256="1jff94hx7skvd6icbrcyabsvz80sgqqv28vz91mcz5jh6v6afhl3"; depends=[]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.1.5.20"; sha256="1aqk0afw2vjb7d75n9imp0dc3nq1w94n3r9fd3k1zsmia8ds8dh3"; depends=[htmlwidgets]; }; - rplexos = derive2 { name="rplexos"; version="1.1.11"; sha256="0i0yiiy84d6qgx70ib0rf0hr0jb6naw6d6w8lvsl104c3m23sf4q"; depends=[data_table DBI doParallel dplyr foreach lubridate Rcpp RSQLite stringi tidyr]; }; rplos = derive2 { name="rplos"; version="0.6.4"; sha256="0jqvm212clh02g9sk239l467xg0b83c1zbnhfwgzmvbvk630na1b"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-6"; sha256="1x9lf5h6cmjyi5xyvmk2ii2dwkwmjqbg0m1fhfabay0flqc7qdm0"; depends=[xtable]; }; rpms = derive2 { name="rpms"; version="0.2.0"; sha256="15l7n9qddzk71s0si0mxmpzvl2h0sdb2z2x058cif4i4kgly9h7d"; depends=[Rcpp RcppArmadillo]; }; @@ -8667,7 +8720,7 @@ in with self; { rsml = derive2 { name="rsml"; version="1.3"; sha256="0a1y41jq0yzr19mb2scwhlp9gx5vngm4q12yxp1fcwk2cqhnsda6"; depends=[rgl XML]; }; rsnps = derive2 { name="rsnps"; version="0.2.0"; sha256="10g1b2i2mp0b4p78iiy83sz2jwz73xfjkhc6ih4ag2wmbdmwf9pb"; depends=[httr jsonlite plyr stringr XML]; }; rspa = derive2 { name="rspa"; version="0.1.8"; sha256="1zgk1v1yk9c51wbsl3skqfrznqj84146dzfwg7q3jy2hpdgf1cg6"; depends=[editrules]; }; - rsparkling = derive2 { name="rsparkling"; version="0.1.0"; sha256="15yz4z96hbl18l2n3vz7mcamwvh7zkqbhlhdmyi002bsc1jd97s9"; depends=[h2o sparklyr]; }; + rsparkling = derive2 { name="rsparkling"; version="0.1.1"; sha256="1mjlm4gv0551nz0n6qd0596jpn6yc5a4pdqn7h5087gg9cpay0sv"; depends=[h2o sparklyr]; }; rsq = derive2 { name="rsq"; version="0.6"; sha256="0qc5mkz7b68al3iahsbv45imkzabbsykd95w1yd7gfcrw0qk592m"; depends=[]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; @@ -8777,7 +8830,7 @@ in with self; { samplingVarEst = derive2 { name="samplingVarEst"; version="1.0-2"; sha256="182y1srz2cs6rn8kh6nns5v29q0ww2jmv0yfp8b110qq23wd5mnd"; depends=[]; }; samplingbook = derive2 { name="samplingbook"; version="1.2.1"; sha256="0xjsmsqj3ik2ffih8f2cpq6m5rpk603y697mh5m42frg20cqa87w"; depends=[pps sampling survey]; }; samr = derive2 { name="samr"; version="2.0"; sha256="0rsfca07pvmhfn7b49yk2ycw00wsq6dmrpv9haxz8q0xv7n5n2q9"; depends=[impute matrixStats]; }; - sand = derive2 { name="sand"; version="1.0.2"; sha256="1y371ds86gcq2id996vp56h5dax2wm0mlk1ks2mp1k81n63l7wmf"; depends=[igraph igraphdata]; }; + sand = derive2 { name="sand"; version="1.0.3"; sha256="0h7djria9v75gqcygjcfznpchqgxjqc6b43arvq9ni1xjrq8sszf"; depends=[igraph igraphdata]; }; sandwich = derive2 { name="sandwich"; version="2.3-4"; sha256="0kbdfkqc8h3jpnlkil0c89z1192q207lii92yirc61css7izfli0"; depends=[zoo]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sankey = derive2 { name="sankey"; version="1.0.0"; sha256="0wm10f514sg3gfrz291k720kznnyssznyvr49c15i26bhb82m0q0"; depends=[simplegraph]; }; @@ -8840,7 +8893,7 @@ in with self; { sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdat = derive2 { name="sdat"; version="1.0"; sha256="1rp2s3y44f3vj0p16j1k2rrs44kmnzy9k0lpcm9ga801nbv93saz"; depends=[]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.0.0"; sha256="1ppqs47p4zha30axgwyvf0dhfrh2hjhi6cgwchikl9k9zwdh4byv"; depends=[car cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS xtable]; }; - sdcTable = derive2 { name="sdcTable"; version="0.21.6"; sha256="17vi1mzr1kiq47dv1zskg63cpsqwxraj01g6sp6lx9vmw2cax74r"; depends=[data_table lpSolveAPI Rcpp Rglpk slam stringr]; }; + sdcTable = derive2 { name="sdcTable"; version="0.22.1"; sha256="0mcvymzabflhd0akczczv1cmxaakknqxjma5vdv75043rv151hqr"; depends=[data_table lpSolveAPI Rcpp Rglpk slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; @@ -9034,7 +9087,7 @@ in with self; { sinaplot = derive2 { name="sinaplot"; version="1.0.0"; sha256="1s87ykgad56f7l7janxx1x0y98dycpwk7mflyqxncq46awrd1ai0"; depends=[plyr]; }; siplab = derive2 { name="siplab"; version="1.2"; sha256="0r7gk9qsmbc3ln67cb8p87bq3s2rx6fbavlly1fpzqqv2isf5pq9"; depends=[spatstat]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; - sirt = derive2 { name="sirt"; version="1.14-0"; sha256="1dbv1wg16hd34hhsah0bf4rk3jqrr31rmsysjsbhall6mqlkprxz"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix MCMCpack mirt mvtnorm pbivnorm plyr psych Rcpp RcppArmadillo sfsmisc sm survey TAM]; }; + sirt = derive2 { name="sirt"; version="1.15-41"; sha256="00l8xv10isbk150gmp0b3rppzy0rnrhfn6w1j8whwdgws5fa3vl3"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix MCMCpack mirt mvtnorm pbivnorm plyr psych Rcpp RcppArmadillo sfsmisc sm survey TAM]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.3"; sha256="17q6dl8wiwf01g6jm93w72jvp1madd0fww1yiazjcbkmz0j3kdbl"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisus = derive2 { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; }; @@ -9088,7 +9141,7 @@ in with self; { smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smnet = derive2 { name="smnet"; version="2.1"; sha256="1jqcgm098kdsrgwrpjry0l6rg8ql7cigxk54svs3170x1fvxa3il"; depends=[DBI RSQLite spam SSN]; }; smoof = derive2 { name="smoof"; version="1.4"; sha256="18li9l62lmpsva0whw6d5wr46w90w3z70wywiy785sla00g06sp2"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo]; }; - smooth = derive2 { name="smooth"; version="1.6.3"; sha256="0b7gdy0bjnaqn4djflxzkjx036jqn8izlc344yvsvybw5gysavl8"; depends=[nloptr Rcpp RcppArmadillo zoo]; }; + smooth = derive2 { name="smooth"; version="1.7.0"; sha256="16jhg9qn6rcgd64wx6f7b9a3p9kgkbms8vlygc1gmnkifnh60a0v"; depends=[forecast nloptr Rcpp RcppArmadillo zoo]; }; smoothAPC = derive2 { name="smoothAPC"; version="0.1"; sha256="06lpjp408ggj27yw6mw7f96kxly7r8kzikbsdp0y1gzig1qq8nbs"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; smoothSurv = derive2 { name="smoothSurv"; version="1.6"; sha256="1s25gpih0nh8waw4r3iw53n3rc44mlzixkh4i2cykbg5rdrs8pnf"; depends=[survival]; }; @@ -9137,12 +9190,12 @@ in with self; { solrium = derive2 { name="solrium"; version="0.4.0"; sha256="1jjvwwgyq335mhc4pff2l604x1k2260zwxl6k6k9lfzgcgqylbbw"; depends=[dplyr httr jsonlite plyr tibble xml2]; }; solvebio = derive2 { name="solvebio"; version="0.3.0"; sha256="1y3raw38888jii2c4x1mvdwscyss8qc9fpyl96y0hpmxj4yg1d4l"; depends=[httr jsonlite]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; - som_nn = derive2 { name="som.nn"; version="1.0.3"; sha256="1viyw7gyfglnpqxamzqxsph876006bx0hbkjb8psi3v71wi014i2"; depends=[class hexbin kohonen som]; }; + som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="2.5"; sha256="02a2j43nppzpbh0zqkq79yqys79jsmwql7nsijxlz27b847wf3pz"; depends=[MASS Matrix]; }; + sommer = derive2 { name="sommer"; version="2.6"; sha256="02y0iah34h9zjji0p5xllz76q3cdabkljsi6vvbdraf0rhi2x51f"; depends=[MASS Matrix]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; @@ -9239,13 +9292,13 @@ in with self; { spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="0.6-10"; sha256="0d94irvrpwlxsc7rw56lj8h72wigpxrsk3gsy6n37zr5l1yc2k5k"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; + spdep = derive2 { name="spdep"; version="0.6-11"; sha256="15pv5ygaj924fjscm7wffjxyz9krbdh6f70f2vawq2m1w7qs2kd8"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.1.2"; sha256="056rdnz6qj24x8gl3aigcd84rk5c06r76wkcgn1rkaacs5b20qmq"; depends=[dplyr lazyeval sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.15.1"; sha256="1kjr3vncns91ha1q3q1xp2ss12m80k5hixzccm1ggdc77ha3bjhv"; depends=[corpcor MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.3"; sha256="0qh0kkxs6hk344k3fys0g9yy0xl0kwnwl18bgiak53fd1k7whskq"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; - speaq = derive2 { name="speaq"; version="1.2.2"; sha256="03f6w575n8c8whi2hcxwspfs65112ykbwyn5nhx3r7x3dyqpk9v1"; depends=[MassSpecWavelet]; }; + speaq = derive2 { name="speaq"; version="1.2.3"; sha256="01xihbj9qx24ql0kn1hafkgbsjl9hw16jh8vxqygmv0lvxljlzvy"; depends=[MassSpecWavelet]; }; speaq2 = derive2 { name="speaq2"; version="0.1.0"; sha256="0rrqh90vqi7l1nbwivzvygd292nnkgk26nyh2kw71pl3gfakmnml"; depends=[cluster data_table doSNOW foreach MassSpecWavelet mQTL]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; speciesgeocodeR = derive2 { name="speciesgeocodeR"; version="1.0-4"; sha256="033877l9sxcvvzpyf9aw19sj8qfscim663j2y2az8bl9c79xw4ph"; depends=[maps raster sp]; }; @@ -9289,6 +9342,7 @@ in with self; { spocc = derive2 { name="spocc"; version="0.6.0"; sha256="0xrwwac2d8j4c4qy6br9l6i9bqlqbmzmq34dp25xwhw1nla6mhvs"; depends=[data_table httr jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble V8 whisker]; }; spongecake = derive2 { name="spongecake"; version="0.1.1"; sha256="1bf2106ik4dp9xl68s8wzj5w6yl3syx8i39zxpp24rywb6f2i8n0"; depends=[ggplot2 jpeg magrittr plyr]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; + sppmix = derive2 { name="sppmix"; version="1.0.0.0"; sha256="0g0c461ab7mshhbxd5qbskk1rxzlq1rl2cgg0xfq00hv6x9nhb8y"; depends=[fields ggplot2 matrixcalc mvtnorm Rcpp RcppArmadillo rgl sp spatstat USAboundaries]; }; spray = derive2 { name="spray"; version="1.0"; sha256="12iv1sksxmac2ykrb8psfnaa9lzq6djv0a7a1x73jr3nflvrx9bh"; depends=[magic partitions Rcpp]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; sprint = derive2 { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha5b7aq13iflq66af597b7yj6abm7zjp"; depends=[boot e1071 ff randomForest rlecuyer]; }; @@ -9355,7 +9409,7 @@ in with self; { stationaRy = derive2 { name="stationaRy"; version="0.4.1"; sha256="1iyzg40vi1l4s68kh50in1p97pcb28z6n932cgrx5k1rv3api13g"; depends=[downloader dplyr leaflet lubridate plyr progress readr stringr]; }; statip = derive2 { name="statip"; version="0.1.4"; sha256="1vy3433rrifcix1m28lizbik3qrl2krdldbvmqfyp046xxf2inc1"; depends=[bazar dplyr]; }; statisticalModeling = derive2 { name="statisticalModeling"; version="0.3.0"; sha256="018ap1hbv4m6y0c71f807apbb9bhr64kcfrn4w8ahhb2520l4mf8"; depends=[ggplot2 lazyeval magrittr mosaic rpart]; }; - statmod = derive2 { name="statmod"; version="1.4.27"; sha256="14yilq9d3z20hig4rs8bjqyydw3dfx90mhmzvw9w8p16h0s595sn"; depends=[]; }; + statmod = derive2 { name="statmod"; version="1.4.29"; sha256="1fgzkwriba39d7946lq892f0si2fjdy37pvxki6ix8xyj8qgnci4"; depends=[]; }; statnet = derive2 { name="statnet"; version="2016.9"; sha256="1j5z7awvac3sb66ma1lrc9j23m6hmzqfnqxc0znsm36h324y3y6s"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; }; statnet_common = derive2 { name="statnet.common"; version="3.3.0"; sha256="190gwkbzd1qh3d7v1xi13snp83jkpvsl7x4ac9x1pxybn3kw856p"; depends=[]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; @@ -9403,7 +9457,7 @@ in with self; { stratification = derive2 { name="stratification"; version="2.2-5"; sha256="0cgr49gvh12s6rr43878jxjkir7b7absqgbfsvj1bjlf2r3gyqy9"; depends=[]; }; stratigraph = derive2 { name="stratigraph"; version="0.66"; sha256="1idn5rwar9pxp1vsra68wrlhagmc92y5rs7vn4h63p35p357qdwz"; depends=[]; }; straweib = derive2 { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; }; - stream = derive2 { name="stream"; version="1.2-3"; sha256="0ngsbnm8zy2nzvsdbbqg1lyd9l0k537ql7y8ck85hmwxj7nxna4b"; depends=[animation clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; + stream = derive2 { name="stream"; version="1.2-4"; sha256="1xk9lnvf9xld74z4sxbwpgxl7cbni88cjyxqzxr0r9pn9vcpwima"; depends=[animation clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; streamMOA = derive2 { name="streamMOA"; version="1.1-2"; sha256="0mg113v8zy6kh67hm91xfd9kd1x8vvvx03svhz70nz9npw00pvlz"; depends=[rJava stream]; }; streamR = derive2 { name="streamR"; version="0.2.1"; sha256="1ml33mj7zqlzfyyam23xk5d25jkm3qr7rfj2kc5j5vgsih6kr0gl"; depends=[RCurl rjson]; }; stremr = derive2 { name="stremr"; version="0.4"; sha256="0n8ickmzjqlxwrz8dsphh1nsbnsgp4mnwm52i5ji099ps5292f65"; depends=[assertthat data_table pander R6 Rcpp rmarkdown speedglm stringr zoo]; }; @@ -9458,7 +9512,7 @@ in with self; { support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; - surrosurv = derive2 { name="surrosurv"; version="1.1.5"; sha256="1mga3xi41rhnpci7zb224j1jdzf4nli4mbr7jy8nibjyjw4ccdz9"; depends=[copula eha lme4 MASS msm mvmeta optextras optimx parfm SurvCorr survival]; }; + surrosurv = derive2 { name="surrosurv"; version="1.1.10"; sha256="1sqwj90nvklrx0by185dlkjwaf9fxrlikf94irxih893vrqsihg8"; depends=[copula eha lme4 MASS msm mvmeta optextras optimx parfm SurvCorr survival]; }; surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-4"; sha256="1ihz71vzrkd5ksy7421myrgkbww0z5k0ywcb2bfalxx2bd2cs2wf"; depends=[flexsurv plotrix survC1 survival]; }; survAUC = derive2 { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; }; survAWKMT2 = derive2 { name="survAWKMT2"; version="1.0.0"; sha256="1cv39rf1ia4nwrri9d9izy6lxndnfwqy2vzrb9rrxga2qplxl79k"; depends=[survival]; }; @@ -9513,7 +9567,7 @@ in with self; { swamp = derive2 { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots impute MASS]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.1"; sha256="014zbp6a66gv7b0f2gmzvifllz266zrc14ihawksvyp1mcxz2ipg"; depends=[lubridate stringr]; }; swfscMisc = derive2 { name="swfscMisc"; version="1.2"; sha256="08p2crsx8zi6qprs14mhdyq9x5sjlp3a46c1zzvp6741an4fy640"; depends=[ggplot2 mapdata maps reshape2 spatstat]; }; - swirl = derive2 { name="swirl"; version="2.4.2"; sha256="1dmjpjyk1a76vyya2x47sakj7xspma0i20zhryraf52mavb5qnw9"; depends=[digest httr RCurl stringr testthat yaml]; }; + swirl = derive2 { name="swirl"; version="2.4.3"; sha256="1l7gwisk3sjslh6zh4cq3vxf5y84af2fr078cp4i86rw1w2j9d44"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.0"; sha256="1j5xrv9nbfxmwxr77qa545fcm0vg76zwv1l5msgykq2g6cc9vc4z"; depends=[base64enc rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; switchr = derive2 { name="switchr"; version="0.11.2"; sha256="0kwkadw1hfkjvlpgr8lfx9qknlml3alk8ka2yhbga019y7ifbm7y"; depends=[RCurl RJSONIO]; }; @@ -9611,6 +9665,7 @@ in with self; { textreg = derive2 { name="textreg"; version="0.1.3"; sha256="0wp1yybhcybb77aykk9frrylk4kjn0jc98q488195qzx7m5n7ccw"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; textshape = derive2 { name="textshape"; version="1.0.2"; sha256="0p9n003z98aqk272wcj02z0c5dzaw01iyfbd0fjyccgkidyaz49h"; depends=[data_table slam stringi]; }; + textstem = derive2 { name="textstem"; version="0.0.1"; sha256="09010a5flly5kiifx2jha5zvwncpk1xsgx2idipjnrav01plhin2"; depends=[dplyr hunspell koRpus lexicon quanteda SnowballC textshape]; }; textutils = derive2 { name="textutils"; version="0.1-6"; sha256="0xvsd6pfg4kv40l14xcvmirqiq8rmky4s8v8diagzri3a7i45nqn"; depends=[]; }; tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; }; @@ -9634,6 +9689,7 @@ in with self; { tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.0"; sha256="1n8lbw3g9x1i6rjj3gsyzwnb0ailw9vb6vgr0s0h21c0g1z66a74"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; + tidyRSS = derive2 { name="tidyRSS"; version="1.0.1"; sha256="0nm5kbwf8i03n2si81iwf55cmc7q9x1rvg2zlq8fw00kmp0amwzs"; depends=[dplyr httr lubridate magrittr purrr RCurl XML xml2]; }; tidyjson = derive2 { name="tidyjson"; version="0.2.1"; sha256="178lc4ii4vjzvrkxfdf5cd9ryxva9h2vv4wl6xgxgaixkab9yv9w"; depends=[assertthat dplyr jsonlite]; }; tidyquant = derive2 { name="tidyquant"; version="0.3.0"; sha256="1fn78ibi9c0a14kr54yca489xjac1j58w8g77il61czqq8bn5hdv"; depends=[curl devtools dplyr ggplot2 lubridate magrittr purrr quantmod readr rvest scales stringr tibble tidyr tidyverse timeSeries tseries TTR xml2 xts zoo]; }; tidyr = derive2 { name="tidyr"; version="0.6.1"; sha256="11hs3gqpbaw3w281as4m7j9n594ix5axfpwbyjsd0l62pwnzj217"; depends=[dplyr lazyeval magrittr Rcpp stringi tibble]; }; @@ -9682,7 +9738,7 @@ in with self; { tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; tlm = derive2 { name="tlm"; version="0.1.4"; sha256="041ydlbsn0dxggrvfjfpg2jmns3c4z021f64cl2k1lwmxvqrp265"; depends=[boot]; }; tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; }; - tm = derive2 { name="tm"; version="0.6-2"; sha256="0q7plaqgc2ypihnz3dyjv2pwa0aimd4kv5i2z6m7aycc4wkmc7j4"; depends=[NLP slam]; }; + tm = derive2 { name="tm"; version="0.7-1"; sha256="1z76ryka8yd9xwcqgla8v7mgh6wc14mqpmygv958nfy5sf2w4k8q"; depends=[BH NLP Rcpp slam]; }; tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; }; tm_plugin_dc = derive2 { name="tm.plugin.dc"; version="0.2-8"; sha256="0z843i2wlmx75748p95jz3j45d9bzmlmqa3awgya24k7bdhpd6kd"; depends=[DSL NLP slam tm]; }; tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.4"; sha256="03qi9rkfwgjvir4cjpi9imc8zaldvan42v9lqfr5d6zhr0ajy6wx"; depends=[NLP tm XML]; }; @@ -9707,7 +9763,7 @@ in with self; { tokenizers = derive2 { name="tokenizers"; version="0.1.4"; sha256="1qcsmcd74i39wql9p49g3pzc4flpi8jq9sxia5mcdx054viijgk9"; depends=[Rcpp SnowballC stringi]; }; tolBasis = derive2 { name="tolBasis"; version="1.0"; sha256="0g4jdwklx92dffrz38kpm1sjzmvhdqzv6mj6hslsjii6sawiyibh"; depends=[lubridate polynom]; }; tolerance = derive2 { name="tolerance"; version="1.3.0"; sha256="17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86"; depends=[rgl]; }; - topicmodels = derive2 { name="topicmodels"; version="0.2-4"; sha256="0hqgq8lkaj5p4lvjgyyw8vh8j85khqvvrm8vw172dbj997x2izi4"; depends=[modeltools slam tm]; }; + topicmodels = derive2 { name="topicmodels"; version="0.2-5"; sha256="1kilkwfhs7295w410xv34np1cr1wdwqxq1776mg24z4f8a56ccrw"; depends=[modeltools slam tm]; }; topmodel = derive2 { name="topmodel"; version="0.7.2-2"; sha256="1nqa8fnpxcn373v6qcd9ma8qzcqwl2md347yql3c8bpqlm9ggz16"; depends=[]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; @@ -9805,6 +9861,7 @@ in with self; { ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; tuber = derive2 { name="tuber"; version="0.7.0"; sha256="1fcls8q4ihz50wnar87047i8il32a1nrxw67nv9wjqfi02z74c2p"; depends=[httr plyr]; }; + tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.0"; sha256="0pxsnvzh5gy5dsdsqsmq8hkr597dnnv60b5dw7bqw493lavk2ccm"; depends=[]; }; tufte = derive2 { name="tufte"; version="0.2"; sha256="0yh5xdxapqpf5hgdn8c2jkk63817l2w6bxavw8457r89rnj1022p"; depends=[htmltools knitr rmarkdown]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; @@ -9894,7 +9951,7 @@ in with self; { varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; varbvs = derive2 { name="varbvs"; version="2.0.0"; sha256="1bi11qcgnw263p1vv25nhcf9b0vf04bl6hpb9agw1rp1f7c9xsrb"; depends=[lattice latticeExtra]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - vardpoor = derive2 { name="vardpoor"; version="0.8.4"; sha256="1w2l3pz4qwsx376wd4vzkfs1xajsy10fkkhmn7gmvrvi899afmh3"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; + vardpoor = derive2 { name="vardpoor"; version="0.8.6"; sha256="0jfwrpg85w10m6y4pk06wrbmnvzjby1fiarn3i14dgglba8jcrbl"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; varhandle = derive2 { name="varhandle"; version="2.0.1"; sha256="06n13dyq41dr0gsq2bzkqqraqqkab93n7gimln4ckkdnrv0a1crx"; depends=[]; }; variables = derive2 { name="variables"; version="0.0-30"; sha256="182c8c7cwkmrpk01bki94y6f3wgf2zdjvvcfa4paa6bfq8w9ckh3"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; @@ -9966,6 +10023,7 @@ in with self; { waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; wakefield = derive2 { name="wakefield"; version="0.3.0"; sha256="1f74503ar4hw48j13npgzybvwc631xndldidqnyfk72wb11fzi4z"; depends=[chron dplyr ggplot2 stringi]; }; + walkr = derive2 { name="walkr"; version="0.3.4"; sha256="01278hfa9mppwqmr54826gb65pswhqbh7ai8ij6m4ncc0fk6pvvd"; depends=[ggplot2 hitandrun limSolve MASS Rcpp RcppEigen shinystan]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; wallace = derive2 { name="wallace"; version="0.6.3"; sha256="1kv1svckdgb8rl51qdrn3cc367gklr89fy2lw92992vmsimafxhd"; depends=[devtools dismo dplyr DT ENMeval leaflet magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyBS shinyjs shinythemes spocc spThin]; }; wand = derive2 { name="wand"; version="0.2.0"; sha256="1p2r96nyr36jv418xi4j2ldarymb4xmpis6d2iz7mq9755kb4fnh"; depends=[dplyr purrr rappdirs Rcpp stringi tibble tidyr]; }; @@ -10018,6 +10076,7 @@ in with self; { wicket = derive2 { name="wicket"; version="0.2.0"; sha256="0wyd72w1l84kxzfy0hhrzr6ipxgzh2gfwldlmv0h79r5icjk17z3"; depends=[BH Rcpp]; }; widals = derive2 { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; }; widenet = derive2 { name="widenet"; version="0.1-2"; sha256="1nimm8szbg82vg00f5c7b3f3sk0gplssbl4ggasjnh7dl621vfny"; depends=[glmnet relaxnet]; }; + widgetframe = derive2 { name="widgetframe"; version="0.1.0"; sha256="0v7mi7m97200dyq8n173gsyw16g75bdas12s38lvg0a09gcyn8z0"; depends=[htmltools htmlwidgets magrittr purrr]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; wikilake = derive2 { name="wikilake"; version="0.1"; sha256="05fcdrv2splhxkr3xgp14mwn36z3sn5hjq4mjibkgh44x7av4rf8"; depends=[maps rvest selectr sp stringi stringr WikipediR xml2]; }; wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.10"; sha256="10av87jlfn2lfx37bnhlpdnhg657md9jx3c3frc9a4mm4lhl7rbv"; depends=[hellno httr jsonlite rvest stringr xml2]; }; @@ -10095,7 +10154,7 @@ in with self; { xtractomatic = derive2 { name="xtractomatic"; version="3.2.0"; sha256="04gng8y7606fvyj767f9vja33fh0xcwj2v2jy3nacybjwwr9yrx0"; depends=[httr ncdf4 sp]; }; xts = derive2 { name="xts"; version="0.9-7"; sha256="163hzcnxrdb4lbsnwwv7qa00h4qlg4jm289acgvbg4jbiywpq7zi"; depends=[zoo]; }; xxIRT = derive2 { name="xxIRT"; version="2.0.0"; sha256="140dp3chsd9mlnbysachck3547zgcpsbrgqhnrdxp348pny0l94b"; depends=[ggplot2 lpSolveAPI reshape2 shiny]; }; - xyloplot = derive2 { name="xyloplot"; version="1.3"; sha256="1pgxsmghpy9am1smdfc0d8hi2l9gb15ssfpf4z84cc2chhaghc7w"; depends=[]; }; + xyloplot = derive2 { name="xyloplot"; version="1.5"; sha256="0h90070m3xgcfky5q6vx6l2lfz0ihwbp2xg25mgmbijz4kg3n9d3"; depends=[]; }; xyz = derive2 { name="xyz"; version="0.1"; sha256="0hynmrbi1f0ijv2g0va8bnr84ls2d8prl32f76mmfq6a3laqrj9i"; depends=[Rcpp]; }; yCrypticRNAs = derive2 { name="yCrypticRNAs"; version="0.99.2"; sha256="130zp8na3d50b49bcsqzsmjy2sif865h6vfpc5zmp1fhvkyykkfd"; depends=[biomaRt data_table IRanges mclust MESS Rcpp Rsamtools]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-26"; sha256="00w127wnwnhkfkrn4764l1ap3d3njlidglk9izcxm0n4kqj0zb49"; depends=[]; }; @@ -10110,11 +10169,11 @@ in with self; { ykmeans = derive2 { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; yorkr = derive2 { name="yorkr"; version="0.0.7"; sha256="035pmvignq4lip3y5670kxj1n70ff04yy2jwi4837pimr9d0qjhv"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; yuima = derive2 { name="yuima"; version="1.5.9"; sha256="04s96zkyccb2nkgzh07jxa8lpyrvzigyiynis2ifiql12yw5c960"; depends=[cubature expm mvtnorm Rcpp zoo]; }; - yuimaGUI = derive2 { name="yuimaGUI"; version="1.0.0"; sha256="12mr9icngrrghn0j1dpyx2njr7sn9zc5nm3imrqq3qxz7wv45fg8"; depends=[DT ggplot2 quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; + yuimaGUI = derive2 { name="yuimaGUI"; version="1.0.1"; sha256="14iyx7rp538l41s135qq5rcq2hbl7rpnhpigz0lzyzdyg6a2mn2n"; depends=[DT ggplot2 quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.0.3-1"; sha256="1408bb5nfipsxskgpjzixnxndg7hf48nq27k0pwrcxx16wykmlcy"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; }; - zeallot = derive2 { name="zeallot"; version="0.0.2"; sha256="0rksacqasiq9xxxmkdqi5c844xhbnda6f6hr8mz37vg9zxqzfbdj"; depends=[]; }; + zeallot = derive2 { name="zeallot"; version="0.0.3"; sha256="0cxrq9lf184szysccx7zhhgsimixhkpdybgj05asi5kbrlf03pn6"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.0"; sha256="1s9lm90yhyhflikvrwpbx94gysc7wazpi4v3vh3fibiyna0a9sgj"; depends=[ggplot2 pbapply plyr reshape2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="0.0-1"; sha256="0agm81rrn4ip6sljrwm1a9i2q9rwdwamnxm0smz757kypgyll8c2"; depends=[graph MASS PairViz]; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index adc842cf50b00..40d8e2b1b436a 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -16,8 +16,6 @@ let # some packages, e.g. cncaGUI, require X running while installation, # so that we use xvfb-run if requireX is true. mkDerive = {mkHomepage, mkUrls}: args: - # XXX: not ideal ("2.2" would match "2.22") but sufficient - assert (!(args ? rVersion) || lib.hasPrefix args.rVersion (lib.getVersion R)); lib.makeOverridable ({ name, version, sha256, depends ? [], @@ -40,7 +38,7 @@ let meta.broken = broken; }); - # Templates for generating Bioconductor, CRAN and IRkernel packages + # Templates for generating Bioconductor and CRAN packages # from the name, version, sha256, and optional per-package arguments above # deriveBioc = mkDerive { @@ -59,10 +57,6 @@ let mkHomepage = {name, snapshot}: "http://mran.revolutionanalytics.com/snapshot/${snapshot}/web/packages/${name}/"; mkUrls = {name, version, snapshot}: [ "http://mran.revolutionanalytics.com/snapshot/${snapshot}/src/contrib/${name}_${version}.tar.gz" ]; }; - deriveIRkernel = mkDerive { - mkHomepage = {name}: "https://irkernel.github.io/"; - mkUrls = {name, version}: [ "http://irkernel.github.io/src/contrib/${name}_${version}.tar.gz" ]; - }; # Overrides package definitions with nativeBuildInputs. # For example, @@ -224,8 +218,7 @@ let _self = import ./bioc-packages.nix { inherit self; derive = deriveBioc; } // import ./bioc-annotation-packages.nix { inherit self; derive = deriveBiocAnn; } // import ./bioc-experiment-packages.nix { inherit self; derive = deriveBiocExp; } // - import ./cran-packages.nix { inherit self; derive = deriveCran; } // - import ./irkernel-packages.nix { inherit self; derive = deriveIRkernel; }; + import ./cran-packages.nix { inherit self; derive = deriveCran; }; # tweaks for the individual packages and "in self" follow @@ -700,794 +693,508 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ - "TED" # depends on broken package animation - "streamMOA" # depends on broken package animation - "stream" # depends on broken package animation - "spdynmod" # depends on broken package animation - "treeplyr" # depends on broken package animation - "recluster" # depends on broken package animation - "geomorph" # depends on broken package animation - "phytools" # depends on broken package animation - "animation" # broken build - "srd" # broken build - "paleotree" # broken build - "ndtv" # broken build - "mvMORPH" # broken build - "mptools" # broken build - "monogeneaGM" # broken build - "molaR" # broken build - "idm" # broken build - "hisse" # broken build - "gfcanalysis" # broken build - "evolqg" # broken build - "evobiR" # broken build - "convevol" # broken build - "bayou" # broken build - "anim_plots" # broken build - "TKF" # broken build - "Rphylopars" # broken build - "RAM" # broken build - "PhySortR" # broken build - "MonoPhy" # broken build - "Momocs" # broken build - "Evomorph" # broken build - "PBD" # depends on broken package DDD - "DDD" # broken build - "BMhyd" # broken build - "rscala" # broken build - "rgpui" # depends on broken package rgp - "rgp" # broken build - "qcmetrics" # broken build - "lfe" # broken build - "interactiveDisplay" # depends on broken package interactiveDisplayBase - "RefNet" # depends on broken package interactiveDisplayBase - "pwOmics" # depends on broken package interactiveDisplayBase - "grasp2db" # depends on broken package interactiveDisplayBase - "gputools" # broken build - "EnsDb_Rnorvegicus_v79" # depends on broken package interactiveDisplayBase - "EnsDb_Rnorvegicus_v75" # depends on broken package interactiveDisplayBase - "EnsDb_Mmusculus_v79" # depends on broken package interactiveDisplayBase - "EnsDb_Mmusculus_v75" # depends on broken package interactiveDisplayBase - "EnsDb_Hsapiens_v79" # depends on broken package interactiveDisplayBase - "EnsDb_Hsapiens_v75" # depends on broken package interactiveDisplayBase - "ensembldb" # depends on broken package interactiveDisplayBase - "AnnotationHubData" # depends on broken package interactiveDisplayBase - "AnnotationHub" # depends on broken package interactiveDisplayBase - "interactiveDisplayBase" # broken build - "h2o" # broken build - "funModeling" # broken build - "brr" # broken build - "bedr" # broken build - "Sabermetrics" # broken build - "RKEEL" # depends on broken package RKEELjars - "RKEELjars" # broken build - "RapidPolygonLookup" # depends on broken package PBSmapping - "PBSmapping" # broken build - "stagePop" # depends on broken package PBSddesolve - "PBSddesolve" # broken build - "Metab" # broken build - "Crossover" # broken build - "CardinalWorkflows" # broken build - "mapr" # depends on broken package spocc - "vmsbase" # broken build - "vcfR" # broken build - "strataG" # broken build - "SSDM" # broken build - "SimInf" # broken build - "shazam" # broken build - "rsvg" # broken build - "Rothermel" # broken build - "rfPermute" # broken build - "redland" # broken build - "RAppArmor" # broken build - "permGPU" # broken build - "pdftools" # broken build - "OceanView" # broken build - "MSeasyTkGUI" # broken build - "mrMLM" # broken build - "MonetDBLite" # broken build - "MixGHD" # broken build - "LCMCR" # broken build - "hunspell" # broken build - "googleformr" # broken build - "ggseas" # depends on broken package x13binary - "seasonal" # depends on broken package x13binary - "gunsales" # depends on broken package x13binary - "x13binary" # broken build - "fds" # broken build - "exifr" # broken build - "rite" # depends on broken package euroMix - "MBCB" # depends on broken package euroMix - "forensim" # depends on broken package euroMix - "dynBiplotGUI" # depends on broken package euroMix - "cncaGUI" # depends on broken package euroMix - "biplotbootGUI" # depends on broken package euroMix - "AnthropMMD" # depends on broken package euroMix - "ilc" # depends on broken package demography - "demography" # broken build - "TransView" # broken build - "Starr" # broken build - "SICtools" # broken build - "ReQON" # depends on broken package seqbias - "seqbias" # broken build - "Repitools" # broken build - "QuasR" # broken build - "qrqc" # broken build - "ProteomicsAnnotationHubData" # broken build - "podkat" # broken build - "PING" # depends on broken package PICS - "PICS" # broken build - "mcaGUI" # broken build - "deepSNV" # broken build - "motifbreakR" # depends on broken package MotIV - "LowMACA" # depends on broken package MotIV - "dagLogo" # depends on broken package MotIV - "motifStack" # depends on broken package MotIV - "MotIV" # broken build - "CNEr" # broken build - "canceR" # broken build - "BubbleTree" # broken build - "arrayQualityMetrics" # broken build - "ArrayExpressHTS" # broken build - "TargetSearchData" # depends on broken package TargetSearch - "TargetSearch" # broken build - "ptw" # depends on broken package nloptr - "gpuR" # broken build - "erma" # broken build - "MBmca" # depends on broken package chipPCR - "dpcR" # depends on broken package chipPCR - "chipPCR" # broken build - "alsace" # broken build - "rrlda" # depends on broken package VIM - "qrfactor" # depends on broken package VIM - "MVN" # depends on broken package VIM - "mvoutlier" # depends on broken package VIM - "robCompositions" # depends on broken package VIM - "DiagrammeRsvg" # depends on broken package V8 - "dagitty" # depends on broken package V8 - "remoter" # depends on broken package sodium - "Fletcher2013b" # depends on broken package RTN - "apaStyle" # depends on broken package ReporteRs - "categoryCompare" # depends on broken package RCytoscape - "preseqR" # depends on broken package polynom - "permutations" # depends on broken package partitions - "GLMMRR" # depends on broken package lme4 - "replicationInterval" # depends on broken package lme4 - "GWASdata" # depends on broken package GWASTools - "EnsemblePCReg" # depends on broken package EnsembleBase - "EnsembleCV" # depends on broken package EnsembleBase - "cpgen" # depends on broken package pedigreemm - "mitml" # depends on broken package jomo - "IlluminaHumanMethylation450k_db" # broken build - "gahgu95ecdf" # broken build - "gahgu95dcdf" # broken build - "gahgu95ccdf" # broken build - "gahgu95bcdf" # broken build - "gahgu95av2cdf" # broken build - "PREDAsampledata" # depends on broken package gahgu133plus2cdf - "gahgu133plus2cdf" # broken build - "gahgu133bcdf" # broken build - "gahgu133acdf" # broken build - "annmap" # depends on broken package RMySQL - "choroplethr" # depends on broken package acs - "acs" # broken build - "spray" # depends on broken package partitions - "CNVrd2" # broken build - "proteoQC" # depends on broken package rTANDEM - "PGA" # depends on broken package rTANDEM - "MBESS" # depends on broken package OpenMx - "DOQTL" # depends on broken package rhdf5 - "DmelSGI" # depends on broken package rhdf5 - "flowDiv" # depends on broken package ncdfFlow - "ChemmineDrugs" # depends on broken package ChemmineR - "stpm" # depends on broken package nloptr - "sjmisc" # depends on broken package nloptr - "rstanarm" # depends on broken package nloptr - "glmmsr" # depends on broken package nloptr - "FDboost" # depends on broken package nloptr - "faraway" # depends on broken package nloptr - "interplot" # depends on broken package nloptr - "VSE" # depends on broken package car - "VARSEDIG" # depends on broken package car - "translateSPSS2R" # depends on broken package car - "tadaatoolbox" # depends on broken package car - "lavaan_shiny" # depends on broken package car - "RcmdrPlugin_GWRM" # depends on broken package car - "pcaBootPlot" # depends on broken package car - "ClustGeo" # depends on broken package car - "preproviz" # depends on broken package car - "hsdar" # depends on broken package car - "DecisionCurve" # depends on broken package car - "CONDOP" # depends on broken package car - "EnsemblePenReg" # depends on broken package car - "EnsembleBase" # depends on broken package car - "fullfact" # depends on broken package car - "clusterSEs" # depends on broken package car - "ggiraph" # depends on broken package gdtools - "rvg" # depends on broken package gdtools - "ggpmisc" # depends on broken package polynom - "mlt_docreg" # depends on broken package polynom - "mlt" # depends on broken package polynom - "basefun" # depends on broken package polynom - "rtable" # depends on broken package ReporteRs - "Mediana" # depends on broken package ReporteRs - "ReporteRs" # broken build - "abd" # depends on broken package nlopt - "adabag" # depends on broken package nlopt - "adhoc" # broken build - "AER" # depends on broken package nlopt - "afex" # depends on broken package nlopt - "agRee" # depends on broken package nlopt - "aLFQ" # depends on broken package nlopt - "algstat" # broken build - "alr3" # depends on broken package nlopt - "alr4" # depends on broken package nlopt - "alsace" # depends on broken nloptr - "anacor" # depends on broken package nlopt - "aods3" # depends on broken package nlopt - "apaTables" # depends on broken package car - "apt" # depends on broken package nlopt - "ArfimaMLM" # depends on broken package nlopt - "arm" # depends on broken package nlopt - "ART" # depends on broken package car - "ARTool" # depends on broken package nlopt - "AssetPricing" # broken build - "AtelieR" # broken build - "auRoc" # depends on broken package MBESS - "AutoModel" # depends on broken package car - "bamdit" # broken build - "bapred" # depends on broken package lme4 - "bartMachine" # depends on broken package nlopt - "bayesDem" # depends on broken package nlopt - "bayesLife" # depends on broken package nlopt - "BayesMed" # broken build - "bayesmix" # broken build - "bayesPop" # depends on broken package nlopt - "Bayesthresh" # depends on broken package nlopt - "BaySIC" # broken build - "BBRecapture" # depends on broken package nlopt - "BCA" # depends on broken package nlopt - "bdynsys" # depends on broken package car - "BEST" # broken build - "bgmm" # depends on broken package nlopt - "BIFIEsurvey" # depends on broken package nlopt - "BiGGR" # depends on broken package rsbml - "bioassayR" # broken build - "BiodiversityR" # depends on broken package nlopt - "biotools" # depends on broken package rpanel - "birte" # build is broken - "BLCOP" # depends on broken package Rsymphony - "blmeco" # depends on broken package nlopt - "blme" # depends on broken package nlopt - "bmd" # depends on broken package nlopt - "bmem" # depends on broken package nlopt - "bmeta" # depends on broken package R2jags - "bootnet" # depends on broken package nlopt - "boral" # broken build - "BradleyTerry2" # depends on broken package nlopt - "BrailleR" # broken build - "brainGraph" # build is broken - "brms" # build is broken - "BRugs" # build is broken - "BTSPAS" # broken build - "CADFtest" # depends on broken package nlopt - "cAIC4" # depends on broken package nlopt - "candisc" # depends on broken package nlopt - "carcass" # depends on broken package nlopt - "car" # depends on broken package nlopt - "caret" # depends on broken package nlopt - "caretEnsemble" # depends on broken package nlopt - "CARrampsOcl" # depends on broken package OpenCL - "Causata" # broken build - "CCpop" # depends on broken package nlopt - "CCTpack" # broken build - "ChainLadder" # depends on broken package nlopt - "ChemmineR" # Build Is Broken - "chipenrich" # build is broken - "chipPCR" # depends on broken nloptr - "classify" # broken build - "climwin" # depends on broken package nlopt - "CLME" # depends on broken package nlopt - "clpAPI" # build is broken - "clusterPower" # depends on broken package nlopt - "clusterSEs" # depends on broken AER - "ClustGeo" # depends on broken FactoMineR - "CNORfuzzy" # depends on broken package nlopt - "CNVPanelizer" # depends on broken cn.mops - "COHCAP" # build is broken - "colorscience" # broken build - "compendiumdb" # broken build - "conformal" # depends on broken package nlopt - "corHMM" # depends on broken package nlopt - "CosmoPhotoz" # depends on broken package nlopt - "covmat" # depends on broken package VIM - "cplexAPI" # build is broken - "cquad" # depends on broken package car - "CrypticIBDcheck" # depends on broken package nlopt - "ctsem" # depends on broken package OpenMx - "cudaBayesreg" # build is broken - "daff" # depends on broken package V8 - "dagbag" # build is broken - "DAMisc" # depends on broken package nlopt - "dbConnect" # broken build - "DBKGrad" # depends on broken package rpanel - #"dcmle" # broken build - "ddst" # broken build - "Deducer" # depends on broken package nlopt - "DeducerExtras" # depends on broken package nlopt - "DeducerPlugInExample" # depends on broken package nlopt - "DeducerPlugInScaling" # depends on broken package nlopt - "DeducerSpatial" # depends on broken package nlopt - "DeducerSurvival" # depends on broken package nlopt - "DeducerText" # depends on broken package nlopt - "DEGraph" # depends on broken package RCytoscape - "destiny" # depends on broken package VIM - "DiagTest3Grp" # depends on broken package nlopt - "difR" # depends on broken package nlopt - "DirichletMultinomial" # Build Is Broken - "DistatisR" # depends on broken package nlopt - "diveRsity" # depends on broken package nlopt - "DJL" # depends on broken package car - "dpa" # depends on broken package nlopt - "dpcR" # depends on broken nloptr - "drc" # depends on broken package nlopt - "drfit" # depends on broken package nlopt - "drsmooth" # depends on broken package nlopt - "dynlm" # depends on broken package nlopt - "easyanova" # depends on broken package nlopt - "ecd" # depends on broken package polynom - "edge" # depends on broken package nlopt - "eeptools" # depends on broken package nlopt - "EffectLiteR" # depends on broken package nlopt - "effects" # depends on broken package nlopt - "eiR" # depends on broken package ChemmineR - "EMA" # depends on broken package nlopt - "embryogrowth" # broken build - "emg" # broken build - "EnQuireR" # depends on broken package nlopt - "episplineDensity" # depends on broken package nlopt - "epr" # depends on broken package nlopt - "erer" # depends on broken package nlopt - "erma" # depends on broken GenomicFiles - "erpR" # depends on broken package rpanel - "ESKNN" # depends on broken package caret - "euroMix" # build is broken - "extRemes" # depends on broken package nlopt - "ez" # depends on broken package nlopt - "ezec" # depends on broken package drc - "facopy" # depends on broken package nlopt - "FactoMineR" # depends on broken package nlopt - "Factoshiny" # depends on broken package nlopt - "faoutlier" # depends on broken package nlopt - "fastR" # depends on broken package nlopt - "FDRreg" # depends on broken package nlopt - "fishmethods" # depends on broken package lme4 - "flipflop" # broken build - "flowDensity" # depends on broken package nlopt - "flowPeaks" # build is broken - "flowQ" # build is broken - "flowStats" # depends on broken package ncdfFlow - "flowVS" # depends on broken package ncdfFlow - "flowWorkspace" # depends on broken package ncdfFlow - "fmcsR" # depends on broken package ChemmineR - "fPortfolio" # depends on broken package Rsymphony - "fracprolif" # broken build - "FreeSortR" # broken build - "freqweights" # depends on broken package nlopt - "frmqa" # broken build - "FSA" # depends on broken package car - "fscaret" # depends on broken package nlopt - "funcy" # depends on broken package car - "fxregime" # depends on broken package nlopt - "gamclass" # depends on broken package nlopt - "gamlss_demo" # depends on broken package rpanel - "gamm4" # depends on broken package nlopt - "gaussquad" # broken build - "gcmr" # depends on broken package nlopt - "GDAtools" # depends on broken package nlopt - "gdtools" # broken build - "GENESIS" # broken build - "genridge" # depends on broken package nlopt - "geojsonio" # depends on broken package V8 - "GEWIST" # depends on broken package nlopt - "ggtree" # broken build - "gimme" # depends on broken package nlopt - "gMCP" # build is broken - "gmum_r" # broken build - "GPC" # broken build - "gplm" # depends on broken package nlopt - "gpuR" # depends on GPU-specific header files - "granova" # depends on broken package nlopt - "graphicalVAR" # depends on broken package nlopt - "GraphPAC" # broken build - "gridGraphics" # build is broken - "GSCA" # depends on broken package rhdf5 - "GUIDE" # depends on broken package rpanel - "GWAF" # depends on broken package nlopt - "GWASTools" # broken build - "hbsae" # depends on broken package nlopt - "heplots" # depends on broken package nlopt - "HiDimMaxStable" # broken build - "HierO" # Build Is Broken - "HilbertVisGUI" # Build Is Broken - "HiPLARM" # Build Is Broken - "HistDAWass" # depends on broken package nlopt - "HLMdiag" # depends on broken package nlopt - "homomorpheR" # broken build - "hpcwld" # broken build - "hwwntest" # broken build - "HydeNet" # broken build - "hysteresis" # depends on broken package nlopt - "IATscores" # depends on broken package nlopt - "ibd" # depends on broken package nlopt - "iccbeta" # depends on broken package nlopt - "iClick" # depends on broken package rugarch - "ifaTools" # depends on broken package OpenMx - "imager" # broken build - "immunoClust" # build is broken - "in2extRemes" # depends on broken package nlopt - "inferference" # depends on broken package nlopt - "influence_ME" # depends on broken package nlopt - "inSilicoMerging" # build is broken - "INSPEcT" # depends on broken GenomicFeatures - "interplot" # depends on broken arm - "IsingFit" # depends on broken package nlopt - "ITEMAN" # depends on broken package car - "iteRates" # broken build - "iterpc" # broken build - "IUPS" # broken build - "IVAS" # depends on broken package nlopt - "ivpack" # depends on broken package nlopt - "jagsUI" # broken build - "JAGUAR" # depends on broken package nlopt - "joda" # depends on broken package nlopt - "jomo" # build is broken - "js" # depends on broken package V8 - "KoNLP" # broken build - "kzft" # broken build - "LaplaceDeconv" # depends on broken package orthopolynom - "lawn" # depends on broken package V8 - "ldamatch" # broken build - "learnstats" # depends on broken package nlopt - "lefse" # build is broken - "lessR" # depends on broken package nlopt - "lgcp" # depends on broken package rpanel - "Libra" # broken build - "LinRegInteractive" # depends on broken package rpanel - "lira" # broken build - "littler" # broken build - "lme4" # depends on broken package nlopt - "LMERConvenienceFunctions" # depends on broken package nlopt - "lmerTest" # depends on broken package nlopt - "lmSupport" # depends on broken package nlopt - "LOGIT" # depends on broken package caret - "longpower" # depends on broken package nlopt - "LPTime" # broken build - "MAIT" # depends on broken package nlopt - "mAPKL" # build is broken - "maPredictDSC" # depends on broken package nlopt - "mar1s" # broken build - "marked" # depends on broken package nlopt - "matchingMarkets" # broken build - "MatrixRider" # depends on broken package DirichletMultinomial - "MaxPro" # depends on broken package nlopt - "mbest" # depends on broken package nlopt - "MBmca" # depends on broken nloptr - "mBvs" # build is broken - "meboot" # depends on broken package nlopt - "medflex" # depends on broken package car - "mediation" # depends on broken package lme4 - "MEDME" # depends on broken package nlopt - "MEMSS" # depends on broken package nlopt - "merTools" # depends on broken package arm - "meta4diag" # broken build - "metagear" # build is broken - "metaheur" # depends on broken package preprocomb - "metamisc" # broken build - "metaplus" # depends on broken package nlopt - "metaSEM" # depends on broken package OpenMx - "Metatron" # depends on broken package nlopt - "miceadds" # depends on broken package nlopt - "micEconAids" # depends on broken package nlopt - "micEconCES" # depends on broken package nlopt - "micEconSNQP" # depends on broken package nlopt - "mi" # depends on broken package nlopt - "MigClim" # Build Is Broken - "migui" # depends on broken package nlopt - "minimist" # depends on broken package V8 - "missMDA" # depends on broken package nlopt - "mitoODE" # build is broken - "mixAK" # depends on broken package nlopt - "MixedPoisson" # broken build - "mixlm" # depends on broken package nlopt - "MixMAP" # depends on broken package nlopt - "mlma" # depends on broken package lme4 - "mlmRev" # depends on broken package nlopt - "MLSeq" # depends on broken package nlopt - "mlVAR" # depends on broken package nlopt - "MM" # broken build - "mongolite" # build is broken - "mosaic" # depends on broken package nlopt - "mpoly" # broken build - "mRMRe" # broken build - "msa" # broken build - "MSGFgui" # depends on broken package MSGFplus - "MSGFplus" # Build Is Broken - "MSstats" # depends on broken package nlopt - "MultiRR" # depends on broken package nlopt - "muma" # depends on broken package nlopt - "munsellinterpol" # broken build - "mutossGUI" # build is broken - "mvinfluence" # depends on broken package nlopt - "MXM" # broken build - "NanoStringDiff" # broken build - "NanoStringQCPro" # build is broken - "nCal" # depends on broken package nlopt - "ncdfFlow" # build is broken - "NCIgraph" # depends on broken package RCytoscape - "NHPoisson" # depends on broken package nlopt - "nloptr" # depends on broken package nlopt - "nlsem" # broken build - "nlts" # broken build - "nonrandom" # depends on broken package nlopt - "NORRRM" # build is broken - "npIntFactRep" # depends on broken package nlopt - "NSM3" # broken build - "omics" # depends on broken package lme4 - "OmicsMarkeR" # depends on broken package nlopt - "OPDOE" # broken build - "OpenCL" # build is broken - "openCyto" # depends on broken package ncdfFlow - "OpenMx" # build is broken - "optBiomarker" # depends on broken package rpanel - "ora" # depends on broken package ROracle - "ordBTL" # depends on broken package nlopt - "ordPens" # depends on broken package lme4 - "orthopolynom" # broken build - "OUwie" # depends on broken package nlopt - "oz" # broken build - "PAA" # broken build - "pamm" # depends on broken package nlopt - "panelAR" # depends on broken package nlopt - "papeR" # depends on broken package nlopt - "parboost" # depends on broken package nlopt - "parma" # depends on broken package nlopt - "partitions" # broken build - "PatternClass" # build is broken - "PBImisc" # depends on broken package nlopt - "pcaBootPlot" # depends on broken FactoMineR - "pcaL1" # build is broken - "pcnetmeta" # broken build - "PDQutils" # broken build - "pedigreemm" # depends on broken package nlopt - "pequod" # depends on broken package nlopt - "pglm" # depends on broken package car - "PhenStat" # depends on broken package nlopt - "phia" # depends on broken package nlopt - "phylocurve" # depends on broken package nlopt - "piecewiseSEM" # depends on broken package lme4 - "plateCore" # depends on broken package ncdfFlow - "plfMA" # broken build - "plm" # depends on broken package car - "plsRbeta" # depends on broken package nlopt - "plsRcox" # depends on broken package nlopt - "plsRglm" # depends on broken package nlopt - "pmm" # depends on broken package nlopt - "polynom" # broken build - "pomp" # depends on broken package nlopt - "predictmeans" # depends on broken package nlopt - "preprocomb" # depends on broken package caret - "prevalence" # broken build - "prLogistic" # depends on broken package nlopt - "pRoloc" # depends on broken package nlopt - "pRolocGUI" # depends on broken package nlopt - "PSAboot" # depends on broken package nlopt - "ptw" # depends on broken nloptr - "PurBayes" # broken build - "pvca" # depends on broken package nlopt - "PythonInR" # broken build - "QFRM" # broken build - "qgraph" # depends on broken package nlopt - "qtbase" # build is broken - "qtlnet" # depends on broken package nlopt - "qtpaint" # depends on broken package qtbase - "qtutils" # depends on broken package qtbase - "QUALIFIER" # depends on broken package ncdfFlow - "quantification" # depends on broken package nlopt - "QuartPAC" # broken build - "R2jags" # broken build - "R2STATS" # depends on broken package nlopt - "rain" # broken build - "raincpc" # build is broken - "rainfreq" # build is broken - "RamiGO" # depends on broken package RCytoscape - "RareVariantVis" # depends on broken VariantAnnotation - "rasclass" # depends on broken package nlopt - "rationalfun" # broken build - "RBerkeley" # broken build - "RbioRXN" # depends on broken package ChemmineR - "Rblpapi" # broken build - "Rchemcpp" # depends on broken package ChemmineR - "rchess" # depends on broken package V8 - "Rchoice" # depends on broken package car - "Rcmdr" # depends on broken package nlopt - "RcmdrMisc" # depends on broken package nlopt - "RcmdrPlugin_BCA" # depends on broken package nlopt - "RcmdrPlugin_coin" # depends on broken package nlopt - "RcmdrPlugin_depthTools" # depends on broken package nlopt - "RcmdrPlugin_DoE" # depends on broken package nlopt - "RcmdrPlugin_doex" # depends on broken package nlopt - "RcmdrPlugin_EACSPIR" # depends on broken package nlopt - "RcmdrPlugin_EBM" # depends on broken package nlopt - "RcmdrPlugin_EcoVirtual" # depends on broken package nlopt - "RcmdrPlugin_epack" # depends on broken package nlopt - "RcmdrPlugin_Export" # depends on broken package Rcmdr - "RcmdrPlugin_EZR" # depends on broken package nlopt - "RcmdrPlugin_FactoMineR" # depends on broken package nlopt - "RcmdrPlugin_HH" # depends on broken package nlopt - "RcmdrPlugin_IPSUR" # depends on broken package nlopt - "RcmdrPlugin_KMggplot2" # depends on broken package nlopt - "RcmdrPlugin_lfstat" # depends on broken package nlopt - "RcmdrPlugin_MA" # depends on broken package nlopt - "RcmdrPlugin_mosaic" # depends on broken package nlopt - "RcmdrPlugin_MPAStats" # depends on broken package nlopt - "RcmdrPlugin_NMBU" # depends on broken package nlopt - "RcmdrPlugin_orloca" # depends on broken package nlopt - "RcmdrPlugin_plotByGroup" # depends on broken package nlopt - "RcmdrPlugin_pointG" # depends on broken package nlopt - "RcmdrPlugin_qual" # depends on broken package nlopt - "RcmdrPlugin_RMTCJags" # depends on broken package nlopt - "RcmdrPlugin_ROC" # depends on broken package nlopt - "RcmdrPlugin_sampling" # depends on broken package nlopt - "RcmdrPlugin_SCDA" # depends on broken package nlopt - "RcmdrPlugin_seeg" # depends on broken package nlopt - "RcmdrPlugin_SLC" # depends on broken package nlopt - "RcmdrPlugin_SM" # depends on broken package nlopt - "RcmdrPlugin_sos" # depends on broken package nlopt - "RcmdrPlugin_steepness" # depends on broken package nlopt - "RcmdrPlugin_survival" # depends on broken package nlopt - "RcmdrPlugin_TeachingDemos" # depends on broken package nlopt - "RcmdrPlugin_temis" # depends on broken package nlopt - "RcmdrPlugin_UCA" # depends on broken package nlopt - "Rcpi" # depends on broken package ChemmineR - "Rcplex" # Build Is Broken - "RcppAPT" # Build Is Broken - "RcppRedis" # build is broken - "rcrypt" # broken build - "RCytoscape" # Build Is Broken - "rdd" # depends on broken package nlopt - "rddtools" # depends on broken package AER - "rDEA" # build is broken - "RDieHarder" # build is broken - "REBayes" # depends on broken package Rmosek - "referenceIntervals" # depends on broken package nlopt - "refund" # depends on broken package nlopt - "refund_shiny" # depends on broken package refund - "REndo" # depends on broken package AER - "repijson" # depends on broken package V8 - "REST" # depends on broken package nlopt - "rgbif" # depends on broken package V8 - "Rgnuplot" # broken build - "rjade" # depends on broken package V8 - "rJPSGCS" # build is broken - "rLindo" # build is broken - "RLRsim" # depends on broken package lme4 - "RMallow" # broken build - "rMAT" # build is broken - "rmgarch" # depends on broken package nlopt - "rminer" # depends on broken package nlopt - "Rmosek" # build is broken - "RMySQL" # broken build - "RNAither" # depends on broken package nlopt - "RnavGraph" # build is broken - "rnetcarto" # broken build - "robustlmm" # depends on broken package nlopt - "rockchalk" # depends on broken package nlopt - "ROI_plugin_symphony" # depends on broken package Rsymphony - "rols" # build is broken - "ROracle" # Build Is Broken - "rpanel" # build is broken - "Rpoppler" # broken build - "rpubchem" # depends on broken package nlopt - "RQuantLib" # build is broken - "rr" # depends on broken package nlopt - "RRreg" # depends on broken package lme4 - "RSAP" # build is broken - "rsbml" # build is broken - "RSDA" # depends on broken package nlopt - "Rsomoclu" # broken build - "RStoolbox" # depends on broken package caret - "Rsymphony" # build is broken - "rTableICC" # broken build - "rTANDEM" # build is broken - "RTN" # depends on broken package nlopt - "rugarch" # depends on broken package nlopt - "rUnemploymentData" # broken build - "RVAideMemoire" # depends on broken package nlopt - "RVFam" # depends on broken package nlopt - "RVideoPoker" # depends on broken package rpanel - "RWebServices" # broken build - "ryouready" # depends on broken package nlopt - "sadists" # broken build - "sampleSelection" # depends on broken package nlopt - "sapFinder" # depends on broken package rTANDEM - "sdcMicro" # depends on broken package nlopt - "SDD" # depends on broken package rpanel - "seeg" # depends on broken package nlopt - "Sejong" # broken build - "sem" # depends on broken package nlopt - "semdiag" # depends on broken package nlopt - "semGOF" # depends on broken package nlopt - "semPlot" # depends on broken package nlopt - "SensMixed" # depends on broken package lme4 - "SensoMineR" # depends on broken package nlopt - "seqCNA" # build is broken - "SeqFeatR" # broken build - "SeqGrapheR" # Build Is Broken - "seqHMM" # depends on broken package nloptr - "seqTools" # build is broken - "SharpeR" # broken build - "shinyTANDEM" # depends on broken package rTANDEM - "SIBER" # broken build - "simPop" # depends on broken package VIM - "simr" # depends on broken package lme4 - "SJava" # broken build - "sjPlot" # depends on broken package nlopt - "smacof" # broken build - "SNAGEE" # build is broken - "snm" # depends on broken package nlopt - "sodium" # broken build - "soilphysics" # depends on broken package rpanel - "sortinghat" # broken build - "SoyNAM" # depends on broken package lme4 - "spacom" # depends on broken package nlopt - "SparseLearner" # depends on broken package qgraph - "specificity" # depends on broken package nlopt - "specmine" # depends on broken package caret - "splm" # depends on broken package car - "spocc" # depends on broken package V8 - "ssmrob" # depends on broken package nlopt - "StatMethRank" # broken build - "stepp" # depends on broken package nlopt - "stringgaussnet" # build is broken - "Surrogate" # depends on broken package nlopt - "svglite" # depends on broken package gdtools - "sybilSBML" # build is broken - "systemfit" # depends on broken package nlopt - "TcGSA" # depends on broken package nlopt - "TDMR" # depends on broken package nlopt - "TFBSTools" # depends on broken package DirichletMultinomial - "tigerstats" # depends on broken package nlopt - "TLBC" # depends on broken package caret - "tmle" # broken build - "tnam" # depends on broken package lme4 - "tolBasis" # depends on broken package polynom - "translateSPSS2R" # depends on broken car - "TriMatch" # depends on broken package nlopt - "TSMySQL" # broken build - "tsoutliers" # broken build - "UBCRM" # broken build - "umx" # depends on broken package OpenMx - "uniftest" # broken build - "untb" # 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build is broken + "sf" # build is broken + "shazam" # build is broken + "shinyTANDEM" # build is broken + "SICtools" # build is broken + "SigTree" # depends on broken package r-rhdf5-2.16.0 + "SimInf" # build is broken + "simsalapar" # build is broken + "smapr" # depends on broken package r-rhdf5-2.16.0 + "SnakeCharmR" # build is broken + "sodium" # build is broken + "soilphysics" # depends on broken package rpanel-1.1-3 + "sortinghat" # build is broken + "spade" # depends on broken package r-flowCore-1.38.2 + "spdynmod" # depends on broken package animation-2.4 + "spocc" # depends on broken package V8-1.2 + "spongecake" # build is broken + "srd" # depends on broken package animation-2.4 + "SSDM" # build is broken + "stagePop" # depends on broken package PBSddesolve-1.12.2 + "Starr" # build is broken + "stream" # depends on broken package animation-2.4 + "streamMOA" # depends on broken package animation-2.4 + "stremr" # build is broken + "subspaceMOA" # depends on broken package animation-2.4 + "svglite" # depends on broken package gdtools-0.1.3 + "sybilSBML" # build is broken + "synthACS" # depends on broken package acs-2.0 + "tcpl" # depends on broken package RMySQL-0.10.9 + "TDA" # build is broken + "TED" # depends on broken package animation-2.4 + "tesseract" # build is broken + "textreadr" # build is broken + "textTinyR" # build is broken + "TFBSTools" # depends on broken package CNEr-1.8.3 + "TKF" # depends on broken package animation-2.4 + "tmap" # depends on broken package V8-1.2 + "tmaptools" # depends on broken package V8-1.2 + "tofsims" # build is broken + "toxboot" # depends on broken package RMySQL-0.10.9 + "TransView" # build is broken + "treeplyr" # depends on broken package animation-2.4 + "TSMySQL" # depends on broken package RMySQL-0.10.9 + "uaparserjs" # depends on broken package V8-1.2 + "UBCRM" # build is broken + "uHMM" # build is broken + "umx" # depends on broken package OpenMx-2.7.4 + "userfriendlyscience" # depends on broken package OpenMx-2.7.4 + "V8" # build is broken + "VBmix" # build is broken + "vcfR" # build is broken + "vdiffr" # depends on broken package gdtools-0.1.3 + "vmsbase" # depends on broken package PBSmapping-2.69.76 + "wallace" # depends on broken package V8-1.2 + "wand" # build is broken + "webp" # build is broken + "wordbankr" # depends on broken package RMySQL-0.10.9 + "x13binary" # build is broken + "x_ent" # depends on broken package r-protolite-1.5 + "xps" # build is broken + "xslt" # build is broken + "zoon" # build is broken ]; otherOverrides = old: new: { diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index 9aec419c0f8d6..8dc3a50abec5a 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -10,7 +10,6 @@ mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/pa , "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/annotation/src/contrib/") , "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/experiment/src/contrib/") , cran=paste0("http://mran.revolutionanalytics.com/snapshot/", snapshotDate, "/src/contrib/") - , irkernel="http://irkernel.github.io/src/contrib/" ) mirrorType <- commandArgs(trailingOnly=TRUE)[1] diff --git a/pkgs/development/r-modules/irkernel-packages.nix b/pkgs/development/r-modules/irkernel-packages.nix deleted file mode 100644 index cef0af62e4f64..0000000000000 --- a/pkgs/development/r-modules/irkernel-packages.nix +++ /dev/null @@ -1,13 +0,0 @@ -# This file is generated from generate-r-packages.R. DO NOT EDIT. -# Execute the following command to update the file. -# -# Rscript generate-r-packages.R irkernel >new && mv new irkernel-packages.nix - -{ self, derive }: -let derive2 = derive {}; -in with self; { - IRdisplay = derive2 { name="IRdisplay"; version="0.3"; sha256="0aa7v3x6s9jd5kzwfh4659gm3dqkmadbk40a0jdpm856mf9r5w6s"; depends=[base64enc repr]; }; - IRkernel = derive2 { name="IRkernel"; version="0.5"; sha256="0v9f01j1ysadq2f8d4mpbimrspj7051cncl0rd1n97rb8wlb9rrf"; depends=[digest evaluate IRdisplay jsonlite repr rzmq uuid]; }; - repr = derive2 { name="repr"; version="0.4"; sha256="1mhvslkxr5nkxiijapzm29jpmjnhhjs1v9s84xvhqpxlcav8dsn6"; depends=[]; }; - rzmq = derive2 { name="rzmq"; version="0.7.7"; sha256="0cds9wsbfb7lhgfjjfisv1i3905ny7x3i2wbb1rcih03ba4a1ij3"; depends=[]; }; -} diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index 20dc23979f5a5..02fe9f50558e7 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -19,7 +19,7 @@ { lib, fetchurl, writeScript, ruby, kerberos, libxml2, libxslt, python, stdenv, which , libiconv, postgresql, v8_3_16_14, clang, sqlite, zlib, imagemagick -, pkgconfig , ncurses, xapian, gpgme, utillinux, fetchpatch, tzdata, icu, libffi +, pkgconfig , ncurses, xapian_1_2_22, gpgme, utillinux, fetchpatch, tzdata, icu, libffi , cmake, libssh2, openssl, mysql, darwin, git, perl, gecode_3, curl , libmsgpack, qt48, libsodium, snappy, libossp_uuid, lxc }@args: @@ -89,7 +89,7 @@ in msgpack = attrs: { buildInputs = [ libmsgpack ]; }; - + mysql = attrs: { buildInputs = [ mysql.lib zlib openssl ]; }; @@ -218,7 +218,7 @@ in --replace "/usr/share/zoneinfo" "${tzdata}/share/zoneinfo" ''; }; - + uuid4r = attrs: { buildInputs = [ which libossp_uuid ]; }; @@ -226,12 +226,12 @@ in xapian-ruby = attrs: { # use the system xapian dontBuild = false; - buildInputs = [ xapian pkgconfig zlib ]; + buildInputs = [ xapian_1_2_22 pkgconfig zlib ]; postPatch = '' cp ${./xapian-Rakefile} Rakefile ''; preInstall = '' - export XAPIAN_CONFIG=${xapian}/bin/xapian-config + export XAPIAN_CONFIG=${xapian_1_2_22}/bin/xapian-config ''; }; diff --git a/pkgs/development/tools/build-managers/buildbot/default.nix b/pkgs/development/tools/build-managers/buildbot/default.nix index 427ff7058405c..b9b8dc7192700 100644 --- a/pkgs/development/tools/build-managers/buildbot/default.nix +++ b/pkgs/development/tools/build-managers/buildbot/default.nix @@ -4,10 +4,10 @@ pythonPackages.buildPythonApplication (rec { name = "${pname}-${version}"; pname = "buildbot"; - version = "0.9.3"; + version = "0.9.4"; src = fetchurl { url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "1yw7knk5dcvwms14vqwlp89flhjf8567l17s9cq7vydh760nmg62"; + sha256 = "0wklrn4fszac9wi8zw3vbsznwyff6y57cz0i81zvh46skb6n3086"; }; buildInputs = with pythonPackages; [ @@ -41,6 +41,7 @@ pythonPackages.buildPythonApplication (rec { dateutil txaio autobahn + pyjwt # tls pyopenssl @@ -70,7 +71,6 @@ pythonPackages.buildPythonApplication (rec { homepage = http://buildbot.net/; description = "Continuous integration system that automates the build/test cycle"; maintainers = with maintainers; [ nand0p ryansydnor ]; - platforms = platforms.linux; license = licenses.gpl2; }; }) diff --git a/pkgs/development/tools/build-managers/buildbot/plugins.nix b/pkgs/development/tools/build-managers/buildbot/plugins.nix index f2fdd1535bfd0..b22759af8fecc 100644 --- a/pkgs/development/tools/build-managers/buildbot/plugins.nix +++ b/pkgs/development/tools/build-managers/buildbot/plugins.nix @@ -4,11 +4,11 @@ let buildbot-pkg = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot-pkg"; - version = "0.9.3"; + version = "0.9.4"; src = fetchurl { url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "02949cvmghyh313i1hmplwxp3nzq789kk85xjx2ir82cpr1d6h6j"; + sha256 = "09a3yvs5hhf8syrkyydznmymgg86dpvgrwy9rb3bryq00wpjb3wn"; }; propagatedBuildInputs = with pythonPackages; [ setuptools ]; @@ -17,7 +17,6 @@ let homepage = http://buildbot.net/; description = "Buildbot Packaging Helper"; maintainers = with maintainers; [ nand0p ryansydnor ]; - platforms = platforms.all; license = licenses.gpl2; }; }; @@ -26,7 +25,7 @@ in { www = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot_www"; - version = "0.9.3"; + version = "0.9.4"; # NOTE: wheel is used due to buildbot circular dependency format = "wheel"; @@ -34,14 +33,13 @@ in { src = pythonPackages.fetchPypi { inherit pname version format; python = "py2"; - sha256 = "0yggg6mcykcnv41srl2sp2zwx2r38vb6a8jgxh1a4825mspm2jf7"; + sha256 = "08m4h2pf6hgi8igh2j0qzfq49izc2z0qqj6ddxk0di5l306jx4im"; }; meta = with stdenv.lib; { homepage = http://buildbot.net/; description = "Buildbot UI"; maintainers = with maintainers; [ nand0p ryansydnor ]; - platforms = platforms.all; license = licenses.gpl2; }; }; @@ -49,11 +47,11 @@ in { console-view = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot-console-view"; - version = "0.9.3"; + version = "0.9.4"; src = fetchurl { url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "1rkzakm05x72nvdivc5bc3gab3nyasdfvlwnwril90jj9q1b92dk"; + sha256 = "1w2vv8iyzl7ak4161avp9n6mhh08adav2fl82bbm17a3064apl8n"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; @@ -62,7 +60,6 @@ in { homepage = http://buildbot.net/; description = "Buildbot Console View Plugin"; maintainers = with maintainers; [ nand0p ryansydnor ]; - platforms = platforms.all; license = licenses.gpl2; }; }; @@ -70,11 +67,11 @@ in { waterfall-view = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot-waterfall-view"; - version = "0.9.3"; + version = "0.9.4"; src = fetchurl { url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "033x2cs0znhk1j0lw067nmjw2m7yy1fdq5qch0sx50jnpjiq6g6g"; + sha256 = "17xn6vrr0k2xabw6hr9sdyy0ry3llyjfmc79qrpgp5bsly2qv3jf"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; @@ -83,7 +80,6 @@ in { homepage = http://buildbot.net/; description = "Buildbot Waterfall View Plugin"; maintainers = with maintainers; [ nand0p ryansydnor ]; - platforms = platforms.all; license = licenses.gpl2; }; }; diff --git a/pkgs/development/tools/build-managers/buildbot/worker.nix b/pkgs/development/tools/build-managers/buildbot/worker.nix index 861ed647c5df0..3023555d22c1f 100644 --- a/pkgs/development/tools/build-managers/buildbot/worker.nix +++ b/pkgs/development/tools/build-managers/buildbot/worker.nix @@ -3,11 +3,11 @@ pythonPackages.buildPythonApplication (rec { name = "${pname}-${version}"; pname = "buildbot-worker"; - version = "0.9.3"; + version = "0.9.4"; src = fetchurl { url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "176kp04g4c7gj15f73wppraqrirbfclyx214gcz966019niikcsp"; + sha256 = "0rdrr8x7sn2nxl51p6h9ad42s3c28lb6sys84zrg0d7fm4zhv7hj"; }; buildInputs = with pythonPackages; [ setuptoolsTrial mock ]; @@ -21,7 +21,6 @@ pythonPackages.buildPythonApplication (rec { homepage = http://buildbot.net/; description = "Buildbot Worker Daemon"; maintainers = with maintainers; [ nand0p ryansydnor ]; - platforms = platforms.all; license = licenses.gpl2; }; }) diff --git a/pkgs/development/tools/clog-cli/default.nix b/pkgs/development/tools/clog-cli/default.nix new file mode 100644 index 0000000000000..1d6ac8493f19d --- /dev/null +++ b/pkgs/development/tools/clog-cli/default.nix @@ -0,0 +1,25 @@ +{ fetchFromGitHub, rustPlatform, stdenv }: + +with rustPlatform; + +buildRustPackage rec { + name = "clog-cli-${version}"; + version = "0.9.2"; + + src = fetchFromGitHub { + owner = "clog-tool"; + repo = "clog-cli"; + rev = "${version}"; + sha256 = "00sfbchyf50z6mb5dq1837hlrki88rrf043idy6qd1r90488jsbv"; + }; + + depsSha256 = "0czv190r6xhbw33l0jhlri6rgspxb8f6dakcamh52qr3z9m0xs2x"; + + meta = { + description = "Generate changelogs from local git metadata"; + homepage = https://github.com/clog-tool/clog-cli; + license = stdenv.lib.licenses.mit; + platforms = stdenv.lib.platforms.linux; + maintainers = [stdenv.lib.maintainers.nthorne]; + }; +} diff --git a/pkgs/development/tools/delve/default.nix b/pkgs/development/tools/delve/default.nix index 0276b3f960133..fc8488ee104ec 100644 --- a/pkgs/development/tools/delve/default.nix +++ b/pkgs/development/tools/delve/default.nix @@ -2,16 +2,16 @@ buildGoPackage rec { name = "delve-${version}"; - version = "0.11.0-alpha"; + version = "0.12.1"; goPackagePath = "github.com/derekparker/delve"; - excludedPackages = "_fixtures"; + excludedPackages = "\\(_fixtures\\|scripts\\|service/test\\)"; src = fetchFromGitHub { owner = "derekparker"; repo = "delve"; rev = "v${version}"; - sha256 = "10axxlvqpa6gx6pz2djp8bb08b83rdj1pavay0nqdd2crsb6rvgd"; + sha256 = "0vkyx9sd66yrqz9sa4pysmpjv6gdgpfk1icrbjk93h2ry15ma8d6"; }; meta = { diff --git a/pkgs/development/tools/misc/coccinelle/default.nix b/pkgs/development/tools/misc/coccinelle/default.nix index f21808d28f7cd..4040eda141fd6 100644 --- a/pkgs/development/tools/misc/coccinelle/default.nix +++ b/pkgs/development/tools/misc/coccinelle/default.nix @@ -1,36 +1,37 @@ -{ fetchurl, stdenv, python, ncurses, ocamlPackages, pkgconfig, makeWrapper }: +{ fetchurl, stdenv, python, ncurses, ocamlPackages, pkgconfig }: stdenv.mkDerivation rec { name = "coccinelle-${version}"; - version = "1.0.0-rc23"; + version = "1.0.6"; src = fetchurl { url = "http://coccinelle.lip6.fr/distrib/${name}.tgz"; - sha256 = "1qrd4kr3wc0hm4l60fwn19iwzwqcjsx85mm3k4gm3cdhljjma82p"; + sha256 = "02g9hmwkvfl838zz690yra5jzrqjg6y6ffxkrfcsx790bhkfsll4"; }; buildInputs = with ocamlPackages; [ - ocaml findlib menhir ocamlPackages.camlp4 + ocaml findlib menhir ocaml_pcre pycaml python ncurses pkgconfig - makeWrapper ]; - # TODO: is the generation of this wrapper truly/still needed? - # I don't have a non-NixOS system, so I cannot verify this, but shouldn't - # libpython know where to find its modules? (the path is for example in - # its Sys-module). - postInstall = - # On non-NixOS systems, Coccinelle would end up looking up Python modules - # in the wrong directory. - '' for p in "$out/bin/"* - do - wrapProgram "$p" \ - --prefix "PYTHONPATH" ":" "${python}/lib/python${python.majorVersion}" - done - ''; + doCheck = !stdenv.isDarwin; - configureFlags = "--enable-release"; + # The build system builds two versions of spgen: + # 'spgen' with ocamlc -custom (bytecode specially linked) + # and 'spgen.opt' using ocamlopt. + # I'm not sure of the intentions here, but the way + # the 'spgen' binary is produced results in an + # invalid/incorrect interpreter path (/lib/ld-linux*). + # We could patch it, but without knowing why it's + # finding the wrong path it seems safer to use + # the .opt version that is built correctly. + # All that said, our fix here is simple: remove 'spgen'. + # The bin/spgen entrypoint is really a bash script + # and will use spgen.opt if 'spgen' doesn't exist. + postInstall = '' + rm $out/lib/coccinelle/spgen/spgen + ''; meta = { description = "Program to apply semantic patches to C code"; diff --git a/pkgs/development/tools/misc/pmccabe/default.nix b/pkgs/development/tools/misc/pmccabe/default.nix index 18f3fe375cbc6..77066cfc8e152 100644 --- a/pkgs/development/tools/misc/pmccabe/default.nix +++ b/pkgs/development/tools/misc/pmccabe/default.nix @@ -1,24 +1,30 @@ -{ fetchurl, stdenv }: +{ stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "pmccabe-2.4-CVS20070814"; + name = "pmccabe-${version}"; + version = "2.6"; src = fetchurl { - url = "http://cvs.parisc-linux.org/download/${name}.tar.gz"; - sha256 = "0nqvfdf2cxx516nw0rwr3lhzhiyrnpc2jf45ldfwsdc9rm2nj3r9"; + url = "http://http.debian.net/debian/pool/main/p/pmccabe/pmccabe_${version}.tar.gz"; + sha256 = "0a3h1b9fb87c82d5fbql5lc4gp338pa5s9i66dhw7zk8jdygx474"; }; configurePhase = '' - sed -i "Makefile" \ - -"es|^[[:blank:]]*DESTDIR[[:blank:]]*=.*$|DESTDIR = $out|g ; \ - s|^[[:blank:]]*INSTALL[[:blank:]]*=.*$|INSTALL = install|g ; \ - s|/usr/|/|g" - ''; + sed -i -r Makefile \ + -e 's,/usr/,/,g' \ + -e "s,^DESTDIR =.*$,DESTDIR = $out," \ + -e "s,^INSTALL = install.*$,INSTALL = install," \ + -e "s,^all:.*$,all: \$(PROGS)," + ''; + + checkPhase = "make test"; + + doCheck = true; - meta = { + meta = with stdenv.lib; { description = "McCabe-style function complexity and line counting for C and C++"; - homepage = http://www.parisc-linux.org/~bame/pmccabe/; - license = stdenv.lib.licenses.gpl2Plus; + homepage = https://people.debian.org/~bame/pmccabe/; + license = licenses.gpl2Plus; longDescription = '' pmccabe calculates McCabe-style cyclomatic complexity for C and @@ -32,6 +38,7 @@ stdenv.mkDerivation rec { trees or files; and vifn, to invoke vi given a function name rather than a file name. ''; - platforms = stdenv.lib.platforms.linux; + platforms = platforms.linux; + maintainers = with maintainers; [ peterhoeg ]; }; } diff --git a/pkgs/development/tools/msgpack-tools/default.nix b/pkgs/development/tools/msgpack-tools/default.nix index d83be1c143135..2b5f42b2cbe54 100644 --- a/pkgs/development/tools/msgpack-tools/default.nix +++ b/pkgs/development/tools/msgpack-tools/default.nix @@ -1,17 +1,39 @@ -{ stdenv, fetchFromGitHub, cmake }: - +{ stdenv, fetchurl, fetchFromGitHub, cmake, unzip }: stdenv.mkDerivation rec { name = "msgpack-tools-${version}"; - version = "v0.6"; + version = "0.6"; src = fetchFromGitHub { owner = "ludocode"; repo = "msgpack-tools"; - rev = version; + rev = "v${version}"; sha256 = "1ygjk25zlpqjckxgqmahnz999704zy2bd9id6hp5jych1szkjgs5"; }; - buildInputs = [ cmake ]; + libb64 = fetchurl { + url = "mirror://sourceforge/libb64/libb64-1.2.1.zip"; + sha256 = "1chlcc8qggzxnbpy5wrda533xyz38dk20w9wl4srrzawm45ny410"; + }; + + rapidjson = fetchurl { + url = "https://github.com/miloyip/rapidjson/archive/99ba17bd66a85ec64a2f322b68c2b9c3b77a4391.tar.gz"; + sha256 = "0jxgyy5n0lf9w36dycwwgz2wici4z9dnxlsn0z6m23zaa47g3wyw"; + }; + + mpack = fetchurl { + url = "https://github.com/ludocode/mpack/archive/df17e83f0fa8571b9cd0d8ccf38144fa90e244d1.tar.gz"; + sha256 = "1br8g3rf86h8z8wbqkd50aq40953862lgn0xk7cy68m07fhqc3pg"; + }; + + postUnpack = '' + mkdir $sourceRoot/contrib + cp ${rapidjson} $sourceRoot/contrib/rapidjson-99ba17bd66a85ec64a2f322b68c2b9c3b77a4391.tar.gz + cp ${libb64} $sourceRoot/contrib/libb64-1.2.1.zip + cp ${mpack} $sourceRoot/contrib/mpack-df17e83f0fa8571b9cd0d8ccf38144fa90e244d1.tar.gz + ''; + + + buildInputs = [ cmake unzip ]; meta = with stdenv.lib; { description = "Command-line tools for converting between MessagePack and JSON"; diff --git a/pkgs/development/tools/mypy-lang/default.nix b/pkgs/development/tools/mypy/default.nix index 6831c7f2b56c1..eb6e50840a5b3 100644 --- a/pkgs/development/tools/mypy-lang/default.nix +++ b/pkgs/development/tools/mypy/default.nix @@ -1,18 +1,17 @@ { stdenv, fetchurl, python35Packages }: - python35Packages.buildPythonApplication rec { - name = "mypy-lang-${version}"; - version = "0.4.5"; + name = "mypy-${version}"; + version = "0.501"; # Tests not included in pip package. doCheck = false; src = fetchurl { - url = "mirror://pypi/m/mypy-lang/${name}.tar.gz"; - sha256 = "0x1n6r5in57zv4s75r22smpqxrz7xxp84fnrhkwzbpjnafa3y81f"; + url = "mirror://pypi/m/mypy/${name}.tar.gz"; + sha256 = "164g3dq2vzxa53n9lgvmbapg41qiwcxk1w9mvzmnqksvql5vm60h"; }; - propagatedBuildInputs = with python35Packages; [ lxml ]; + propagatedBuildInputs = with python35Packages; [ lxml typed-ast ]; meta = with stdenv.lib; { description = "Optional static typing for Python"; diff --git a/pkgs/development/tools/ocaml/camlp4/default.nix b/pkgs/development/tools/ocaml/camlp4/default.nix index cedd35ae6ade3..8babfe415dfde 100644 --- a/pkgs/development/tools/ocaml/camlp4/default.nix +++ b/pkgs/development/tools/ocaml/camlp4/default.nix @@ -1,16 +1,19 @@ { stdenv, fetchzip, which, ocaml, ocamlbuild }: let param = { - "4.02.3" = { + "4.02" = { version = "4.02+6"; sha256 = "06yl4q0qazl7g25b0axd1gdkfd4qpqzs1gr5fkvmkrcbz113h1hj"; }; - "4.03.0" = { + "4.03" = { version = "4.03+1"; sha256 = "1f2ndch6f1m4fgnxsjb94qbpwjnjgdlya6pard44y6n0dqxi1wsq"; }; - "4.04.0" = { + "4.04" = { version = "4.04+1"; sha256 = "1ad7rygqjxrc1im95gw9lp8q83nhdaf383f2808f1p63yl42xm7k"; }; - }."${ocaml.version}"; + "4.05" = { + version = "4.05+1"; + sha256 = "0wm795hpwvwpib9c9z6p8kw2fh7p7b2hml6g15z8zry3y7w738sv"; }; + }."${ocaml.meta.branch}"; in stdenv.mkDerivation rec { diff --git a/pkgs/development/tools/scalafmt/default.nix b/pkgs/development/tools/scalafmt/default.nix index 0e8c656fbb8b6..c7d26fc79ddb8 100644 --- a/pkgs/development/tools/scalafmt/default.nix +++ b/pkgs/development/tools/scalafmt/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, unzip, jre }: stdenv.mkDerivation rec { - version = "0.5.7"; + version = "0.5.8"; baseName = "scalafmt"; name = "${baseName}-${version}"; src = fetchurl { url = "https://github.com/olafurpg/scalafmt/releases/download/v${version}/${baseName}.tar.gz"; - sha256 = "1jg2yhnzlyxg735b6qcj3pgnr5q2i361ql27qmxk977al24v5w8i"; + sha256 = "0pwmmn5k5wscmpidxpc88yrgm7gkpk9ssdh97lz0fjqln99gwp8r"; }; unpackPhase = "tar xvzf $src"; diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix index 4af3ab5c4b93c..770eb9cc78b40 100644 --- a/pkgs/development/tools/yarn/default.nix +++ b/pkgs/development/tools/yarn/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "yarn-${version}"; - version = "0.20.3"; + version = "0.22.0"; src = fetchzip { url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz"; - sha256 = "1w4n05155rlkyv9k43fs0zrl04pri89vbi7rzpwmcg6zfxz273lw"; + sha256 = "1hs4fqjj9rg47ipcagpdk3grh7aa0ls3vsxq4q20d5hb43s9n5gs"; }; buildInputs = [makeWrapper nodejs]; diff --git a/pkgs/development/web/nodejs/v7.nix b/pkgs/development/web/nodejs/v7.nix index 53ed893794c28..b34d84ac851a1 100644 --- a/pkgs/development/web/nodejs/v7.nix +++ b/pkgs/development/web/nodejs/v7.nix @@ -10,11 +10,11 @@ let baseName = if enableNpm then "nodejs" else "nodejs-slim"; in stdenv.mkDerivation (nodejs // rec { - version = "7.6.0"; + version = "7.7.1"; name = "${baseName}-${version}"; src = fetchurl { url = "https://nodejs.org/download/release/v${version}/node-v${version}.tar.xz"; - sha256 = "1adldbhza422951i9rk69x75apj9rdqlx1pm8ybb9w7zjqk09ybg"; + sha256 = "04bn7c2hvhs6dqjz3khrlqyspljbxiw7y7g4fkjkn8k7lwmchpwn"; }; }) |