alembic: use threadsafe hdf5 (#30682)

* hdf5: introduce hdf5-threadsafe variant

Compiled with thread safe support and without the High Level library
which is incompatible with thread safety.

* alembic: clean buildInputs to nativeBuildInputs

* alembic: use hdf5-threadsafe

1 files changed, 7 insertions, 0 deletions

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index b4063591476c5..06a6eaec0a288 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2688,6 +2688,13 @@ with pkgs;
     inherit gfortran;
   });
 
+  hdf5-threadsafe = appendToName "threadsafe" (hdf5.overrideAttrs (oldAttrs: {
+      # Threadsafe hdf5
+      # However, hdf5 hl (High Level) library is not considered stable
+      # with thread safety and should be disabled.
+      configureFlags = oldAttrs.configureFlags ++ ["--enable-threadsafe" "--disable-hl" ];
+  }));
+
   hdfview = callPackage ../tools/misc/hdfview {
     javac = jdk;
   };