diff options
author | Robert Scott <code@humanleg.org.uk> | 2023-04-13 00:10:42 +0100 |
---|---|---|
committer | GitHub <noreply@github.com> | 2023-04-13 00:10:42 +0100 |
commit | 2107f7de60045faadd9a503626912a3a7e48ebea (patch) | |
tree | 62bda639c3f1b640b4f575b5f9ad2ff078a7d5fa /pkgs | |
parent | 46d97242e2d67dcf7b4587386227d4ab9b28589c (diff) | |
parent | d69d242b7bcaa8bbadc87a68be84eb5719e35585 (diff) |
Merge pull request #225865 from bzizou/samtools
samtools: 1.13 -> 1.17
Diffstat (limited to 'pkgs')
-rw-r--r-- | pkgs/applications/science/biology/samtools/default.nix | 13 | ||||
-rw-r--r-- | pkgs/development/libraries/science/biology/htslib/default.nix | 4 |
2 files changed, 4 insertions, 13 deletions
diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index c72dd1b19077d..5e18d5ead58a5 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -2,22 +2,13 @@ stdenv.mkDerivation rec { pname = "samtools"; - version = "1.13"; + version = "1.17"; src = fetchurl { url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA="; + sha256 = "sha256-Ot85C2KCGf1kCPFGAqTEqpDmPhizldrXIqtRlDiipyk"; }; - patches = [ - # Pull upstream patch for ncurses-6.3 support - (fetchpatch { - name = "ncurses-6.3.patch"; - url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch"; - sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838="; - }) - ]; - # tests require `bgzip` from the htslib package nativeCheckInputs = [ htslib ]; diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index 219c06ce57ad0..a3b35d55c9e8a 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "htslib"; - version = "1.16"; + version = "1.17"; src = fetchurl { url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-YGt8ev9zc0zwM+zRVvQFKfpXkvVFJJUqKJOMoIkNeSQ="; + sha256 = "sha256-djd5KIxA8HZG7HrZi5bDeMc5Fx0WKtmDmIaHg7chg58"; }; # perl is only used during the check phase. |