diff options
author | worldofpeace <worldofpeace@protonmail.ch> | 2019-08-31 23:06:06 -0400 |
---|---|---|
committer | GitHub <noreply@github.com> | 2019-08-31 23:06:06 -0400 |
commit | 732c0a0d533e7ccf9b766a95fad8b702606a7414 (patch) | |
tree | 02f7c7e5a8f3795c2f625b11d8734f381639ec80 /pkgs | |
parent | 76f82c2303ceec9816ddf5d954a7d699878613a8 (diff) | |
parent | 2aa9b655f487328b978f526e85f9723f0172c295 (diff) |
Merge pull request #64289 from tadeokondrak/kallisto/update/0.46.0
kallisto: 0.43.1 -> 0.46.0
Diffstat (limited to 'pkgs')
-rw-r--r-- | pkgs/applications/science/biology/kallisto/default.nix | 19 |
1 files changed, 11 insertions, 8 deletions
diff --git a/pkgs/applications/science/biology/kallisto/default.nix b/pkgs/applications/science/biology/kallisto/default.nix index 16639db178163..de93ae5d78291 100644 --- a/pkgs/applications/science/biology/kallisto/default.nix +++ b/pkgs/applications/science/biology/kallisto/default.nix @@ -1,25 +1,28 @@ -{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }: +{ stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }: stdenv.mkDerivation rec { pname = "kallisto"; - version = "0.43.1"; + version = "0.46.0"; src = fetchFromGitHub { repo = "kallisto"; owner = "pachterlab"; rev = "v${version}"; - sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz"; + sha256 = "09vgdqwpigl4x3sdw5vjfyknsllkli339mh8xapbf7ldm0jldfn9"; }; - nativeBuildInputs = [ cmake ]; - + nativeBuildInputs = [ autoconf cmake ]; + buildInputs = [ hdf5 zlib ]; + # Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160 + enableParallelBuilding = false; + meta = with stdenv.lib; { - description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; - homepage = https://pachterlab.github.io/kallisto; + description = "Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; + homepage = "https://pachterlab.github.io/kallisto"; license = licenses.bsd2; platforms = platforms.linux; - maintainers = [ maintainers.arcadio ]; + maintainers = with maintainers; [ arcadio ]; }; } |