diff options
978 files changed, 24319 insertions, 21311 deletions
diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index 195f534e7c806..5385e4a1e0a7c 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -270,6 +270,7 @@ pkgs/development/python-modules/buildcatrust/ @ajs124 @lukegb @mweinelt # GNOME /pkgs/desktops/gnome @jtojnar /pkgs/desktops/gnome/extensions @piegamesde @jtojnar +/pkgs/build-support/make-hardcode-gsettings-patch @jtojnar # Cinnamon /pkgs/desktops/cinnamon @mkg20001 diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index b0479ed85efab..c6bc661c72b66 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -55,7 +55,7 @@ Package version upgrades usually allow for simpler commit messages, including at Pull requests should not be squash merged in order to keep complete commit messages and GPG signatures intact and must not be when the change doesn't make sense as a single commit. This means that, when addressing review comments in order to keep the pull request in an always mergeable status, you will sometimes need to rewrite your branch's history and then force-push it with `git push --force-with-lease`. -Useful git commands that can help a lot with this are `git commit --patch --amend` and `git rebase --interactive @~3`. For more details consult the git man pages. +Useful git commands that can help a lot with this are `git commit --patch --amend` and `git rebase --interactive`. For more details consult the git man pages or online resources like [git-rebase.io](https://git-rebase.io/) or [The Pro Git Book](https://git-scm.com/book/en/v2/Git-Tools-Rewriting-History). ## Rebasing between branches (i.e. from master to staging) diff --git a/doc/build-aux/pandoc-filters/link-unix-man-references.lua b/doc/build-aux/pandoc-filters/link-unix-man-references.lua index e437ac73a1cba..b81d4a0979e72 100644 --- a/doc/build-aux/pandoc-filters/link-unix-man-references.lua +++ b/doc/build-aux/pandoc-filters/link-unix-man-references.lua @@ -3,10 +3,31 @@ Turns a manpage reference into a link, when a mapping is defined below. ]] local man_urls = { - ["tmpfiles.d(5)"] = "https://www.freedesktop.org/software/systemd/man/tmpfiles.d.html", ["nix.conf(5)"] = "https://nixos.org/manual/nix/stable/#sec-conf-file", - ["systemd.time(7)"] = "https://www.freedesktop.org/software/systemd/man/systemd.time.html", + + ["journald.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/journald.conf.html", + ["logind.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/logind.conf.html", + ["networkd.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/networkd.conf.html", + ["systemd.automount(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.automount.html", + ["systemd.exec(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.exec.html", + ["systemd.link(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.link.html", + ["systemd.mount(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.mount.html", + ["systemd.netdev(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.netdev.html", + ["systemd.network(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.network.html", + ["systemd.nspawn(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.nspawn.html", + ["systemd.path(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.path.html", + ["systemd.resource-control(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.resource-control.html", + ["systemd.scope(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.scope.html", + ["systemd.service(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.service.html", + ["systemd.slice(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.slice.html", + ["systemd.socket(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.socket.html", ["systemd.timer(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.timer.html", + ["systemd.unit(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.unit.html", + ["timesyncd.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/timesyncd.conf.html", + ["tmpfiles.d(5)"] = "https://www.freedesktop.org/software/systemd/man/tmpfiles.d.html", + ["systemd.time(7)"] = "https://www.freedesktop.org/software/systemd/man/systemd.time.html", + ["systemd-fstab-generator(8)"] = "https://www.freedesktop.org/software/systemd/man/systemd-fstab-generator.html", + ["systemd-networkd-wait-online.service(8)"] = "https://www.freedesktop.org/software/systemd/man/systemd-networkd-wait-online.service.html", } function Code(elem) diff --git a/doc/builders/special.xml b/doc/builders/special.xml index 8902ce5c81329..525eb71abfe7e 100644 --- a/doc/builders/special.xml +++ b/doc/builders/special.xml @@ -7,4 +7,5 @@ </para> <xi:include href="special/fhs-environments.section.xml" /> <xi:include href="special/mkshell.section.xml" /> + <xi:include href="special/darwin-builder.section.xml" /> </chapter> diff --git a/doc/builders/special/darwin-builder.section.md b/doc/builders/special/darwin-builder.section.md new file mode 100644 index 0000000000000..96b1fcb507f25 --- /dev/null +++ b/doc/builders/special/darwin-builder.section.md @@ -0,0 +1,60 @@ +# darwin.builder {#sec-darwin-builder} + +`darwin.builder` provides a way to bootstrap a Linux builder on a macOS machine. + +This requires macOS version 12.4 or later. + +This also requires that port 22 on your machine is free (since Nix does not +permit specifying a non-default SSH port for builders). + +You will also need to be a trusted user for your Nix installation. In other +words, your `/etc/nix/nix.conf` should have something like: + +``` +extra-trusted-users = <your username goes here> +``` + +To launch the builder, run the following flake: + +```ShellSession +$ nix run nixpkgs#darwin.builder +``` + +That will prompt you to enter your `sudo` password: + +``` ++ sudo --reset-timestamp /nix/store/…-install-credentials.sh ./keys +Password: +``` + +… so that it can install a private key used to `ssh` into the build server. +After that the script will launch the virtual machine: + +``` +<<< Welcome to NixOS 22.11.20220901.1bd8d11 (aarch64) - ttyAMA0 >>> + +Run 'nixos-help' for the NixOS manual. + +nixos login: +``` + +> Note: When you need to stop the VM, type `Ctrl`-`a` + `c` to open the `qemu` +> prompt and then type `quit` followed by `Enter` + +To delegate builds to the remote builder, add the following options to your +`nix.conf` file: + +``` +# - Replace ${ARCH} with either aarch64 or x86_64 to match your host machine +# - Replace ${MAX_JOBS} with the maximum number of builds (pick 4 if you're not sure) +builders = ssh-ng://builder@localhost ${ARCH}-linux /etc/nix/builder_ed25519 ${MAX_JOBS} - - - c3NoLWVkMjU1MTkgQUFBQUMzTnphQzFsWkRJMU5URTVBQUFBSUpCV2N4Yi9CbGFxdDFhdU90RStGOFFVV3JVb3RpQzVxQkorVXVFV2RWQ2Igcm9vdEBuaXhvcwo=' + +# Not strictly necessary, but this will reduce your disk utilization +builders-use-substitutes = true +``` + +… and then restart your Nix daemon to apply the change: + +```ShellSession +$ sudo launchctl kickstart -k system/org.nixos.nix-daemon +``` diff --git a/doc/doc-support/default.nix b/doc/doc-support/default.nix index 429c7a5fbe800..ec180064c35d8 100644 --- a/doc/doc-support/default.nix +++ b/doc/doc-support/default.nix @@ -3,8 +3,22 @@ let inherit (pkgs) lib; inherit (lib) hasPrefix removePrefix; - locationsXml = import ./lib-function-locations.nix { inherit pkgs nixpkgs; }; - functionDocs = import ./lib-function-docs.nix { inherit locationsXml pkgs; }; + libsets = [ + { name = "asserts"; description = "assertion functions"; } + { name = "attrsets"; description = "attribute set functions"; } + { name = "strings"; description = "string manipulation functions"; } + { name = "versions"; description = "version string functions"; } + { name = "trivial"; description = "miscellaneous functions"; } + { name = "lists"; description = "list manipulation functions"; } + { name = "debug"; description = "debugging functions"; } + { name = "options"; description = "NixOS / nixpkgs option handling"; } + { name = "filesystem"; description = "filesystem functions"; } + { name = "sources"; description = "source filtering functions"; } + { name = "cli"; description = "command-line serialization functions"; } + ]; + + locationsXml = import ./lib-function-locations.nix { inherit pkgs nixpkgs libsets; }; + functionDocs = import ./lib-function-docs.nix { inherit locationsXml pkgs libsets; }; version = pkgs.lib.version; epub-xsl = pkgs.writeText "epub.xsl" '' diff --git a/doc/doc-support/lib-function-docs.nix b/doc/doc-support/lib-function-docs.nix index 4e67609e23fb2..d6fa08aa96205 100644 --- a/doc/doc-support/lib-function-docs.nix +++ b/doc/doc-support/lib-function-docs.nix @@ -1,30 +1,32 @@ -# Generates the documentation for library functions via nixdoc. To add -# another library function file to this list, the include list in the -# file `doc/functions/library.xml` must also be updated. +# Generates the documentation for library functions via nixdoc. -{ pkgs ? import ./.. {}, locationsXml }: +{ pkgs, locationsXml, libsets }: with pkgs; stdenv.mkDerivation { name = "nixpkgs-lib-docs"; - src = ./../../lib; + src = ../../lib; buildInputs = [ nixdoc ]; installPhase = '' function docgen { - nixdoc -c "$1" -d "$2" -f "../lib/$1.nix" > "$out/$1.xml" + # TODO: wrap lib.$1 in <literal>, make nixdoc not escape it + nixdoc -c "$1" -d "lib.$1: $2" -f "$1.nix" > "$out/$1.xml" + echo "<xi:include href='$1.xml' />" >> "$out/index.xml" } - mkdir -p $out - ln -s ${locationsXml} $out/locations.xml + mkdir -p "$out" + + cat > "$out/index.xml" << 'EOF' + <?xml version="1.0" encoding="utf-8"?> + <root xmlns:xi="http://www.w3.org/2001/XInclude"> + EOF + + ${lib.concatMapStrings ({ name, description }: '' + docgen ${name} ${lib.escapeShellArg description} + '') libsets} - docgen asserts 'Assert functions' - docgen attrsets 'Attribute-set functions' - docgen strings 'String manipulation functions' - docgen trivial 'Miscellaneous functions' - docgen lists 'List manipulation functions' - docgen debug 'Debugging functions' - docgen options 'NixOS / nixpkgs option handling' - docgen filesystem 'Filesystem functions' - docgen sources 'Source filtering functions' + echo "</root>" >> "$out/index.xml" + + ln -s ${locationsXml} $out/locations.xml ''; } diff --git a/doc/doc-support/lib-function-locations.nix b/doc/doc-support/lib-function-locations.nix index 68edd27098543..ae1123c63ad30 100644 --- a/doc/doc-support/lib-function-locations.nix +++ b/doc/doc-support/lib-function-locations.nix @@ -1,4 +1,4 @@ -{ pkgs ? (import ./.. { }), nixpkgs ? { }}: +{ pkgs, nixpkgs ? { }, libsets }: let revision = pkgs.lib.trivial.revisionWithDefault (nixpkgs.revision or "master"); @@ -16,9 +16,7 @@ let subsetname = subsetname; functions = libDefPos toplib.${subsetname}; }) - (builtins.filter - (name: builtins.isAttrs toplib.${name}) - (builtins.attrNames toplib)); + (builtins.map (x: x.name) libsets); nixpkgsLib = pkgs.lib; diff --git a/doc/doc-support/parameters.xml b/doc/doc-support/parameters.xml index 50ff25fe10750..5b39d2f7f1a58 100644 --- a/doc/doc-support/parameters.xml +++ b/doc/doc-support/parameters.xml @@ -11,6 +11,7 @@ <xsl:param name="html.script" select="'./highlightjs/highlight.pack.js ./highlightjs/loader.js'" /> <xsl:param name="xref.with.number.and.title" select="0" /> <xsl:param name="use.id.as.filename" select="1" /> + <xsl:param name="generate.section.toc.level" select="1" /> <xsl:param name="toc.section.depth" select="0" /> <xsl:param name="admon.style" select="''" /> <xsl:param name="callout.graphics.extension" select="'.svg'" /> diff --git a/doc/functions/library.xml b/doc/functions/library.xml index 0a8bae229f261..788ea0b94f1fe 100644 --- a/doc/functions/library.xml +++ b/doc/functions/library.xml @@ -8,25 +8,7 @@ Nixpkgs provides a standard library at <varname>pkgs.lib</varname>, or through <code>import <nixpkgs/lib></code>. </para> -<!-- These docs are generated via nixdoc. To add another generated - library function file to this list, the file - `lib-function-docs.nix` must also be updated. --> - - <xi:include href="./library/generated/asserts.xml" /> - - <xi:include href="./library/generated/attrsets.xml" /> - - <xi:include href="./library/generated/strings.xml" /> - - <xi:include href="./library/generated/trivial.xml" /> - - <xi:include href="./library/generated/lists.xml" /> - - <xi:include href="./library/generated/debug.xml" /> - - <xi:include href="./library/generated/options.xml" /> - - <xi:include href="./library/generated/filesystem.xml" /> - - <xi:include href="./library/generated/sources.xml" /> + <!-- The index must have a root element to declare namespaces, but we + don't want to include it, so we select all of its children. --> + <xi:include href="./library/generated/index.xml" xpointer="xpointer(/root/*)" /> </section> diff --git a/doc/languages-frameworks/android.section.md b/doc/languages-frameworks/android.section.md index 28128ead6631d..15b8d3839b193 100644 --- a/doc/languages-frameworks/android.section.md +++ b/doc/languages-frameworks/android.section.md @@ -232,7 +232,6 @@ androidenv.emulateApp { platformVersion = "24"; abiVersion = "armeabi-v7a"; # mips, x86, x86_64 systemImageType = "default"; - useGoogleAPIs = false; app = ./MyApp.apk; package = "MyApp"; activity = "MainActivity"; diff --git a/doc/languages-frameworks/dotnet.section.md b/doc/languages-frameworks/dotnet.section.md index 1baa135ae5866..bfb193b1f021a 100644 --- a/doc/languages-frameworks/dotnet.section.md +++ b/doc/languages-frameworks/dotnet.section.md @@ -121,7 +121,6 @@ in buildDotnetModule rec { dotnet-sdk = dotnetCorePackages.sdk_3_1; dotnet-runtime = dotnetCorePackages.net_5_0; - dotnetFlags = [ "--runtime linux-x64" ]; executables = [ "foo" ]; # This wraps "$out/lib/$pname/foo" to `$out/bin/foo`. executables = []; # Don't install any executables. diff --git a/lib/attrsets.nix b/lib/attrsets.nix index 4b663db2ce4a3..9009feb87d90e 100644 --- a/lib/attrsets.nix +++ b/lib/attrsets.nix @@ -16,6 +16,8 @@ rec { Example: x = { a = { b = 3; }; } + # ["a" "b"] is equivalent to x.a.b + # 6 is a default value to return if the path does not exist in attrset attrByPath ["a" "b"] 6 x => 3 attrByPath ["z" "z"] 6 x @@ -23,6 +25,7 @@ rec { Type: attrByPath :: [String] -> Any -> AttrSet -> Any + */ attrByPath = # A list of strings representing the attribute path to return from `set` @@ -96,7 +99,7 @@ rec { => error: cannot find attribute `z.z' Type: - getAttrFromPath :: [String] -> AttrSet -> Value + getAttrFromPath :: [String] -> AttrSet -> Any */ getAttrFromPath = # A list of strings representing the attribute path to get from `set` @@ -109,10 +112,7 @@ rec { /* Map each attribute in the given set and merge them into a new attribute set. Type: - concatMapAttrs :: - (String -> a -> AttrSet) - -> AttrSet - -> AttrSet + concatMapAttrs :: (String -> a -> AttrSet) -> AttrSet -> AttrSet Example: concatMapAttrs @@ -168,8 +168,7 @@ rec { ] { a.b.c = 0; } => { a = { b = { d = 1; }; }; x = { y = "xy"; }; } - Type: - updateManyAttrsByPath :: [AttrSet] -> AttrSet -> AttrSet + Type: updateManyAttrsByPath :: [{ path :: [String], update :: (Any -> Any) }] -> AttrSet -> AttrSet */ updateManyAttrsByPath = let # When recursing into attributes, instead of updating the `path` of each @@ -252,6 +251,7 @@ rec { Example: attrValues {c = 3; a = 1; b = 2;} => [1 2 3] + Type: attrValues :: AttrSet -> [Any] */ @@ -341,6 +341,7 @@ rec { Type: foldAttrs :: (Any -> Any -> Any) -> Any -> [AttrSets] -> Any + */ foldAttrs = # A function, given a value and a collector combines the two. @@ -394,7 +395,7 @@ rec { { a = 2; b = 20; } ] Type: - cartesianProductOfSets :: AttrSet -> [AttrSet] + cartesianProductOfSets :: AttrSet -> [AttrSet] */ cartesianProductOfSets = # Attribute set with attributes that are lists of values @@ -413,7 +414,7 @@ rec { => { name = "some"; value = 6; } Type: - nameValuePair :: String -> Any -> AttrSet + nameValuePair :: String -> Any -> { name :: String, value :: Any } */ nameValuePair = # Attribute name @@ -600,7 +601,7 @@ rec { => { } Type: - optionalAttrs :: Bool -> AttrSet + optionalAttrs :: Bool -> AttrSet -> AttrSet */ optionalAttrs = # Condition under which the `as` attribute set is returned. @@ -646,7 +647,7 @@ rec { => { a = ["x" "y"]; b = ["z"] } Type: - zipAttrsWith :: (String -> [ Any ] -> Any) -> [ AttrSet ] -> AttrSet + zipAttrsWith :: (String -> [ Any ] -> Any) -> [ AttrSet ] -> AttrSet */ zipAttrsWith = builtins.zipAttrsWith or (f: sets: zipAttrsWithNames (concatMap attrNames sets) f sets); @@ -737,7 +738,7 @@ rec { } Type: - recursiveUpdate :: AttrSet -> AttrSet -> AttrSet + recursiveUpdate :: AttrSet -> AttrSet -> AttrSet */ recursiveUpdate = # Left attribute set of the merge. @@ -795,6 +796,7 @@ rec { /* Turns a list of strings into a human-readable description of those strings represented as an attribute path. The result of this function is not intended to be machine-readable. + Create a new attribute set with `value` set at the nested attribute location specified in `attrPath`. Example: showAttrPath [ "foo" "10" "bar" ] @@ -831,11 +833,11 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getBin pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r" Type: - getOutput :: Derivation -> String + getBin :: Derivation -> String */ getBin = getOutput "bin"; @@ -844,11 +846,11 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getLib pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r-lib" Type: - getOutput :: Derivation -> String + getLib :: Derivation -> String */ getLib = getOutput "lib"; @@ -857,11 +859,11 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getDev pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r-dev" Type: - getOutput :: Derivation -> String + getDev :: Derivation -> String */ getDev = getOutput "dev"; @@ -870,15 +872,19 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getMan pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r-man" Type: - getOutput :: Derivation -> String + getMan :: Derivation -> String */ getMan = getOutput "man"; - /* Pick the outputs of packages to place in `buildInputs` */ + /* Pick the outputs of packages to place in `buildInputs` + + Type: chooseDevOutputs :: [Derivation] -> [String] + + */ chooseDevOutputs = # List of packages to pick `dev` outputs from drvs: @@ -900,6 +906,7 @@ rec { Type: recurseIntoAttrs :: AttrSet -> AttrSet + */ recurseIntoAttrs = # An attribute set to scan for derivations. @@ -909,7 +916,7 @@ rec { /* Undo the effect of recurseIntoAttrs. Type: - recurseIntoAttrs :: AttrSet -> AttrSet + dontRecurseIntoAttrs :: AttrSet -> AttrSet */ dontRecurseIntoAttrs = # An attribute set to not scan for derivations. @@ -919,7 +926,10 @@ rec { /* `unionOfDisjoint x y` is equal to `x // y // z` where the attrnames in `z` are the intersection of the attrnames in `x` and `y`, and all values `assert` with an error message. This - operator is commutative, unlike (//). */ + operator is commutative, unlike (//). + + Type: unionOfDisjoint :: AttrSet -> AttrSet -> AttrSet + */ unionOfDisjoint = x: y: let intersection = builtins.intersectAttrs x y; @@ -930,9 +940,10 @@ rec { in (x // y) // mask; - # deprecated + # DEPRECATED zipWithNames = zipAttrsWithNames; - # deprecated + + # DEPRECATED zip = builtins.trace "lib.zip is deprecated, use lib.zipAttrsWith instead" zipAttrsWith; } diff --git a/lib/generators.nix b/lib/generators.nix index c0fe69389e00d..4c9c2d1e98693 100644 --- a/lib/generators.nix +++ b/lib/generators.nix @@ -342,7 +342,10 @@ rec { else "{" + introSpace + libStr.concatStringsSep introSpace (libAttr.mapAttrsToList (name: value: - "${libStr.escapeNixIdentifier name} = ${go (indent + " ") value};") v) + "${libStr.escapeNixIdentifier name} = ${ + builtins.addErrorContext "while evaluating an attribute `${name}`" + (go (indent + " ") value) + };") v) + outroSpace + "}" else abort "generators.toPretty: should never happen (v = ${v})"; in go ""; diff --git a/lib/licenses.nix b/lib/licenses.nix index 612cfba6c7305..f54ab464357b3 100644 --- a/lib/licenses.nix +++ b/lib/licenses.nix @@ -969,6 +969,11 @@ in mkLicense lset) ({ fullName = "wxWindows Library Licence, Version 3.1"; }; + x11 = { + spdxId = "X11"; + fullName = "X11 License"; + }; + xfig = { fullName = "xfig"; url = "http://mcj.sourceforge.net/authors.html#xfig"; # https is broken diff --git a/lib/options.nix b/lib/options.nix index b13687576e810..9425e803c0565 100644 --- a/lib/options.nix +++ b/lib/options.nix @@ -104,8 +104,6 @@ rec { /* Creates an Option attribute set for an option that specifies the package a module should use for some purpose. - Type: mkPackageOption :: pkgs -> string -> { default :: [string], example :: null | string | [string] } -> option - The package is specified as a list of strings representing its attribute path in nixpkgs. Because of this, you need to pass nixpkgs itself as the first argument. @@ -116,6 +114,8 @@ rec { You can omit the default path if the name of the option is also attribute path in nixpkgs. + Type: mkPackageOption :: pkgs -> string -> { default :: [string], example :: null | string | [string] } -> option + Example: mkPackageOption pkgs "hello" { } => { _type = "option"; default = «derivation /nix/store/3r2vg51hlxj3cx5vscp0vkv60bqxkaq0-hello-2.10.drv»; defaultText = { ... }; description = "The hello package to use."; type = { ... }; } @@ -221,9 +221,10 @@ rec { optionAttrSetToDocList' = _: options: concatMap (opt: let + name = showOption opt.loc; docOption = rec { loc = opt.loc; - name = showOption opt.loc; + inherit name; description = opt.description or null; declarations = filter (x: x != unknownModule) opt.declarations; internal = opt.internal or false; @@ -234,8 +235,18 @@ rec { readOnly = opt.readOnly or false; type = opt.type.description or "unspecified"; } - // optionalAttrs (opt ? example) { example = renderOptionValue opt.example; } - // optionalAttrs (opt ? default) { default = renderOptionValue (opt.defaultText or opt.default); } + // optionalAttrs (opt ? example) { + example = + builtins.addErrorContext "while evaluating the example of option `${name}`" ( + renderOptionValue opt.example + ); + } + // optionalAttrs (opt ? default) { + default = + builtins.addErrorContext "while evaluating the default value of option `${name}`" ( + renderOptionValue (opt.defaultText or opt.default) + ); + } // optionalAttrs (opt ? relatedPackages && opt.relatedPackages != null) { inherit (opt) relatedPackages; }; subOptions = diff --git a/lib/strings.nix b/lib/strings.nix index 8a19bc56ed5cb..20f6db08cebcf 100644 --- a/lib/strings.nix +++ b/lib/strings.nix @@ -281,7 +281,7 @@ rec { => [ ] stringToCharacters "abc" => [ "a" "b" "c" ] - stringToCharacters "💩" + stringToCharacters "🦄" => [ "�" "�" "�" "�" ] */ stringToCharacters = s: diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index 97179337e778d..c591802104343 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -186,6 +186,12 @@ githubId = 7755101; name = "Aaron Andersen"; }; + aaqaishtyaq = { + email = "aaqaishtyaq@gmail.com"; + github = "aaqaishtyaq"; + githubId = 22131756; + name = "Aaqa Ishtyaq"; + }; aaronjanse = { email = "aaron@ajanse.me"; matrix = "@aaronjanse:matrix.org"; @@ -1474,12 +1480,12 @@ }]; }; babariviere = { - email = "babathriviere@gmail.com"; + email = "me@babariviere.com"; github = "babariviere"; githubId = 12128029; name = "Bastien Rivière"; keys = [{ - fingerprint = "2F85 B362 B274 0012 37E2 81EE F202 AD3B 6EDF 4BD1"; + fingerprint = "74AA 9AB4 E6FF 872B 3C5A CB3E 3903 5CC0 B75D 1142"; }]; }; babbaj = { @@ -1695,6 +1701,15 @@ fingerprint = "D35E C9CE E631 638F F1D8 B401 6F0E 410D C3EE D02"; }]; }; + benjaminedwardwebb = { + name = "Ben Webb"; + email = "benjaminedwardwebb@gmail.com"; + github = "benjaminedwardwebb"; + githubId = 7118777; + keys = [{ + fingerprint = "E9A3 7864 2165 28CE 507C CA82 72EA BF75 C331 CD25"; + }]; + }; benley = { email = "benley@gmail.com"; github = "benley"; @@ -1728,12 +1743,6 @@ githubId = 442623; name = "Ben Pye"; }; - benwbooth = { - email = "benwbooth@gmail.com"; - github = "benwbooth"; - githubId = 75972; - name = "Ben Booth"; - }; berberman = { email = "berberman@yandex.com"; matrix = "@berberman:mozilla.org"; @@ -3932,6 +3941,16 @@ github = "edlimerkaj"; githubId = 71988351; }; + edrex = { + email = "ericdrex@gmail.com"; + github = "edrex"; + githubId = 14615; + keys = [{ + fingerprint = "AC47 2CCC 9867 4644 A9CF EB28 1C5C 1ED0 9F66 6824"; + }]; + matrix = "@edrex:matrix.org"; + name = "Eric Drechsel"; + }; ehllie = { email = "me@ehllie.xyz"; github = "ehllie"; @@ -5167,6 +5186,15 @@ githubId = 643494; name = "Cillian de Róiste"; }; + GoldsteinE = { + email = "root@goldstein.rs"; + github = "GoldsteinE"; + githubId = 12019211; + name = "Maximilian Siling"; + keys = [{ + fingerprint = "0BAF 2D87 CB43 746F 6237 2D78 DE60 31AB A0BB 269A"; + }]; + }; Gonzih = { email = "gonzih@gmail.com"; github = "Gonzih"; @@ -8693,6 +8721,12 @@ githubId = 322214; name = "Mathnerd314"; }; + math-42 = { + email = "matheus.4200@gmail.com"; + github = "Math-42"; + githubId = 43853194; + name = "Matheus Vieira"; + }; matklad = { email = "aleksey.kladov@gmail.com"; github = "matklad"; @@ -11530,6 +11564,15 @@ githubId = 131856; name = "Arnout Engelen"; }; + rafael = { + name = "Rafael"; + email = "pr9@tuta.io"; + github = "rafa-dot-el"; + githubId = 104688305; + keys = [{ + fingerprint = "5F0B 3EAC F1F9 8155 0946 CDF5 469E 3255 A40D 2AD6"; + }]; + }; RaghavSood = { email = "r@raghavsood.com"; github = "RaghavSood"; @@ -12026,7 +12069,7 @@ name = "Russell O'Connor"; }; rodrgz = { - email = "rodrgz@proton.me"; + email = "erik@rodgz.com"; github = "rodrgz"; githubId = 53882428; name = "Erik Rodriguez"; diff --git a/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh b/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh index 94104e00edb81..69455bfb68794 100755 --- a/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh +++ b/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh @@ -1,5 +1,5 @@ #! /usr/bin/env nix-shell -#! nix-shell -i bash -p coreutils nix gnused -I nixpkgs=. +#! nix-shell -i bash -p coreutils jq nix -I nixpkgs=. config_file=pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -12,4 +12,4 @@ dont-distribute-packages: EOF echo "Regenerating list of transitive broken packages ..." -echo -e $(nix-instantiate --eval --strict maintainers/scripts/haskell/transitive-broken-packages.nix) | sed 's/\"//' | LC_ALL=C.UTF-8 sort -i >> $config_file +nix-instantiate --eval --option restrict-eval true -I . --strict --json maintainers/scripts/haskell/transitive-broken-packages.nix | jq -r . | LC_ALL=C.UTF-8 sort -i >> $config_file diff --git a/maintainers/scripts/haskell/transitive-broken-packages.nix b/maintainers/scripts/haskell/transitive-broken-packages.nix index d4ddaa9576587..50ccb14577bc1 100644 --- a/maintainers/scripts/haskell/transitive-broken-packages.nix +++ b/maintainers/scripts/haskell/transitive-broken-packages.nix @@ -12,5 +12,5 @@ let (getEvaluating (nixpkgs { config.allowBroken = true; }).haskellPackages); in '' - ${lib.concatMapStringsSep "\n" (x: " - ${x}") brokenDeps} + ${lib.concatMapStringsSep "\n" (x: " - ${x}") brokenDeps} '' diff --git a/maintainers/scripts/luarocks-packages.csv b/maintainers/scripts/luarocks-packages.csv index 49bc50ae61314..d6d2a9da06872 100644 --- a/maintainers/scripts/luarocks-packages.csv +++ b/maintainers/scripts/luarocks-packages.csv @@ -11,6 +11,7 @@ compat53,,,,0.7-1,,vcunat cosmo,,,,,,marsam coxpcall,,,,1.17.0-1,, cqueues,,,,,,vcunat +cyan,,,,,, cyrussasl,https://github.com/JorjBauer/lua-cyrussasl.git,,,,, digestif,https://github.com/astoff/digestif.git,,,0.2-1,5.3, dkjson,,,,,, @@ -99,6 +100,7 @@ sqlite,,,,,, std._debug,https://github.com/lua-stdlib/_debug.git,,,,, std.normalize,https://github.com/lua-stdlib/normalize.git,,,,, stdlib,,,,41.2.2,,vyp +teal-language-server,,,http://luarocks.org/dev,,, tl,,,,,,mephistophiles vstruct,https://github.com/ToxicFrog/vstruct.git,,,,, vusted,,,,,,figsoda diff --git a/maintainers/team-list.nix b/maintainers/team-list.nix index af6684a03f9e3..b37d2d0a28a02 100644 --- a/maintainers/team-list.nix +++ b/maintainers/team-list.nix @@ -755,6 +755,7 @@ with lib.maintainers; { xfce = { members = [ romildo + muscaln ]; scope = "Maintain Xfce desktop environment and related packages."; shortName = "Xfce"; diff --git a/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml b/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml index 95d5a80b7330c..ab1a63c807991 100644 --- a/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml +++ b/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml @@ -100,6 +100,26 @@ </listitem> <listitem> <para> + <literal>minio</literal> removed support for its legacy + filesystem backend in + <link xlink:href="https://github.com/minio/minio/releases/tag/RELEASE.2022-10-29T06-21-33Z">RELEASE.2022-10-29T06-21-33Z</link>. + This means if your storage was created with the old format, + minio will no longer start. Unfortunately minio doesn’t + provide a an automatic migration, they only provide + <link xlink:href="https://min.io/docs/minio/windows/operations/install-deploy-manage/migrate-fs-gateway.html">instructions + how to manually convert the node</link>. To facilitate this + migration we keep around the last version that still supports + the old filesystem backend as + <literal>minio_legacy_fs</literal>. Use it via + <literal>services.minio.package = minio_legacy_fs;</literal> + to export your data before switching to the new version. See + the corresponding + <link xlink:href="https://github.com/NixOS/nixpkgs/issues/199318">issue</link> + for more details. + </para> + </listitem> + <listitem> + <para> <literal>services.sourcehut.dispatch</literal> and the corresponding package (<literal>sourcehut.dispatchsrht</literal>) have been removed @@ -140,6 +160,16 @@ </listitem> <listitem> <para> + The Nginx module now validates the syntax of config files at + build time. For more complex configurations (using + <literal>include</literal> with out-of-store files notably) + you may need to disable this check by setting + <link linkend="opt-services.nginx.validateConfig">services.nginx.validateConfig</link> + to <literal>false</literal>. + </para> + </listitem> + <listitem> + <para> The EC2 image module previously detected and automatically mounted ext3-formatted instance store devices and partitions in stage-1 (initramfs), storing <literal>/tmp</literal> on the @@ -260,6 +290,49 @@ </listitem> <listitem> <para> + <literal>services.peertube</literal> now requires you to + specify the secret file + <literal>secrets.secretsFile</literal>. It can be generated by + running <literal>openssl rand -hex 32</literal>. Before + upgrading, read the release notes for PeerTube: + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + <link xlink:href="https://github.com/Chocobozzz/PeerTube/releases/tag/v5.0.0">Release + v5.0.0</link> + </para> + </listitem> + </itemizedlist> + <para> + And backup your data. + </para> + </listitem> + <listitem> + <para> + The module <literal>services.headscale</literal> was + refactored to be compliant with + <link xlink:href="https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md">RFC + 0042</link>. To be precise, this means that the following + things have changed: + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + Most settings has been migrated under + <link linkend="opt-services.headscale.settings">services.headscale.settings</link> + which is an attribute-set that will be converted into + headscale’s YAML config format. This means that the + configuration from + <link xlink:href="https://github.com/juanfont/headscale/blob/main/config-example.yaml">headscale’s + example configuration</link> can be directly written as + attribute-set in Nix within this option. + </para> + </listitem> + </itemizedlist> + </listitem> + <listitem> + <para> A new <literal>virtualisation.rosetta</literal> module was added to allow running <literal>x86_64</literal> binaries through diff --git a/nixos/doc/manual/release-notes/rl-2305.section.md b/nixos/doc/manual/release-notes/rl-2305.section.md index de376a7403b96..76e2a1f8b4329 100644 --- a/nixos/doc/manual/release-notes/rl-2305.section.md +++ b/nixos/doc/manual/release-notes/rl-2305.section.md @@ -35,6 +35,8 @@ In addition to numerous new and upgraded packages, this release has the followin - The EC2 image module no longer fetches instance metadata in stage-1. This results in a significantly smaller initramfs, since network drivers no longer need to be included, and faster boots, since metadata fetching can happen in parallel with startup of other services. This breaks services which rely on metadata being present by the time stage-2 is entered. Anything which reads EC2 metadata from `/etc/ec2-metadata` should now have an `after` dependency on `fetch-ec2-metadata.service` +- `minio` removed support for its legacy filesystem backend in [RELEASE.2022-10-29T06-21-33Z](https://github.com/minio/minio/releases/tag/RELEASE.2022-10-29T06-21-33Z). This means if your storage was created with the old format, minio will no longer start. Unfortunately minio doesn't provide a an automatic migration, they only provide [instructions how to manually convert the node](https://min.io/docs/minio/windows/operations/install-deploy-manage/migrate-fs-gateway.html). To facilitate this migration we keep around the last version that still supports the old filesystem backend as `minio_legacy_fs`. Use it via `services.minio.package = minio_legacy_fs;` to export your data before switching to the new version. See the corresponding [issue](https://github.com/NixOS/nixpkgs/issues/199318) for more details. + - `services.sourcehut.dispatch` and the corresponding package (`sourcehut.dispatchsrht`) have been removed due to [upstream deprecation](https://sourcehut.org/blog/2022-08-01-dispatch-deprecation-plans/). - The [services.snapserver.openFirewall](#opt-services.snapserver.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. @@ -43,6 +45,8 @@ In addition to numerous new and upgraded packages, this release has the followin - The [services.unifi-video.openFirewall](#opt-services.unifi-video.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. +- The Nginx module now validates the syntax of config files at build time. For more complex configurations (using `include` with out-of-store files notably) you may need to disable this check by setting [services.nginx.validateConfig](#opt-services.nginx.validateConfig) to `false`. + - The EC2 image module previously detected and automatically mounted ext3-formatted instance store devices and partitions in stage-1 (initramfs), storing `/tmp` on the first discovered device. This behaviour, which only catered to very specific use cases and could not be disabled, has been removed. Users relying on this should provide their own implementation, and probably use ext4 and perform the mount in stage-2. - The EC2 image module previously detected and activated swap-formatted instance store devices and partitions in stage-1 (initramfs). This behaviour has been removed. Users relying on this should provide their own implementation. @@ -57,7 +61,7 @@ In addition to numerous new and upgraded packages, this release has the followin <!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> -- `vim_configurable` has been renamed to `vim-full` to avoid confusion: `vim-full`'s build-time features are configurable, but both `vim` and `vim-full` are *customizable* (in the sense of user configuration, like vimrc). +- `vim_configurable` has been renamed to `vim-full` to avoid confusion: `vim-full`'s build-time features are configurable, but both `vim` and `vim-full` are _customizable_ (in the sense of user configuration, like vimrc). - The module for the application firewall `opensnitch` got the ability to configure rules. Available as [services.opensnitch.rules](#opt-services.opensnitch.rules) @@ -76,6 +80,19 @@ In addition to numerous new and upgraded packages, this release has the followin - `mastodon` now supports connection to a remote `PostgreSQL` database. +- `services.peertube` now requires you to specify the secret file `secrets.secretsFile`. It can be generated by running `openssl rand -hex 32`. + Before upgrading, read the release notes for PeerTube: + - [Release v5.0.0](https://github.com/Chocobozzz/PeerTube/releases/tag/v5.0.0) + + And backup your data. + +- The module `services.headscale` was refactored to be compliant with [RFC 0042](https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md). To be precise, this means that the following things have changed: + + - Most settings has been migrated under [services.headscale.settings](#opt-services.headscale.settings) which is an attribute-set that + will be converted into headscale's YAML config format. This means that the configuration from + [headscale's example configuration](https://github.com/juanfont/headscale/blob/main/config-example.yaml) + can be directly written as attribute-set in Nix within this option. + - A new `virtualisation.rosetta` module was added to allow running `x86_64` binaries through [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) inside virtualised NixOS guests on Apple silicon. This feature works by default with the [UTM](https://docs.getutm.app/) virtualisation [package](https://search.nixos.org/packages?channel=unstable&show=utm&from=0&size=1&sort=relevance&type=packages&query=utm). - The new option `users.motdFile` allows configuring a Message Of The Day that can be updated dynamically. diff --git a/nixos/lib/systemd-unit-options.nix b/nixos/lib/systemd-unit-options.nix index 44f26572a23ba..9c7cb34f14b57 100644 --- a/nixos/lib/systemd-unit-options.nix +++ b/nixos/lib/systemd-unit-options.nix @@ -324,7 +324,11 @@ in rec { scriptArgs = mkOption { type = types.str; default = ""; - description = lib.mdDoc "Arguments passed to the main process script."; + example = "%i"; + description = lib.mdDoc '' + Arguments passed to the main process script. + Can contain specifiers (`%` placeholders expanded by systemd, see {manpage}`systemd.unit(5)`). + ''; }; preStart = mkOption { diff --git a/nixos/lib/test-driver/test_driver/driver.py b/nixos/lib/test-driver/test_driver/driver.py index e32f6810ca87f..6542a2e2f6938 100644 --- a/nixos/lib/test-driver/test_driver/driver.py +++ b/nixos/lib/test-driver/test_driver/driver.py @@ -220,6 +220,20 @@ class Driver: res = driver.polling_conditions.pop() assert res is self.condition + def wait(self, timeout: int = 900) -> None: + def condition(last: bool) -> bool: + if last: + rootlog.info(f"Last chance for {self.condition.description}") + ret = self.condition.check(force=True) + if not ret and not last: + rootlog.info( + f"({self.condition.description} failure not fatal yet)" + ) + return ret + + with rootlog.nested(f"waiting for {self.condition.description}"): + retry(condition, timeout=timeout) + if fun_ is None: return Poll else: diff --git a/nixos/lib/test-driver/test_driver/polling_condition.py b/nixos/lib/test-driver/test_driver/polling_condition.py index 459845452fa12..02ca0a03ab3dc 100644 --- a/nixos/lib/test-driver/test_driver/polling_condition.py +++ b/nixos/lib/test-driver/test_driver/polling_condition.py @@ -1,4 +1,5 @@ from typing import Callable, Optional +from math import isfinite import time from .logger import rootlog @@ -14,7 +15,7 @@ class PollingCondition: description: Optional[str] last_called: float - entered: bool + entry_count: int def __init__( self, @@ -34,14 +35,21 @@ class PollingCondition: self.description = str(description) self.last_called = float("-inf") - self.entered = False + self.entry_count = 0 - def check(self) -> bool: - if self.entered or not self.overdue: + def check(self, force: bool = False) -> bool: + if (self.entered or not self.overdue) and not force: return True with self, rootlog.nested(self.nested_message): - rootlog.info(f"Time since last: {time.monotonic() - self.last_called:.2f}s") + time_since_last = time.monotonic() - self.last_called + last_message = ( + f"Time since last: {time_since_last:.2f}s" + if isfinite(time_since_last) + else "(not called yet)" + ) + + rootlog.info(last_message) try: res = self.condition() # type: ignore except Exception: @@ -69,9 +77,16 @@ class PollingCondition: def overdue(self) -> bool: return self.last_called + self.seconds_interval < time.monotonic() + @property + def entered(self) -> bool: + # entry_count should never dip *below* zero + assert self.entry_count >= 0 + return self.entry_count > 0 + def __enter__(self) -> None: - self.entered = True + self.entry_count += 1 def __exit__(self, exc_type, exc_value, traceback) -> None: # type: ignore - self.entered = False + assert self.entered + self.entry_count -= 1 self.last_called = time.monotonic() diff --git a/nixos/lib/testing-python.nix b/nixos/lib/testing-python.nix index 134d38f1b6767..4904ad6e35913 100644 --- a/nixos/lib/testing-python.nix +++ b/nixos/lib/testing-python.nix @@ -1,3 +1,4 @@ +args@ { system , pkgs ? import ../.. { inherit system config; } # Use a minimal kernel? @@ -5,7 +6,7 @@ # Ignored , config ? { } # !!! See comment about args in lib/modules.nix -, specialArgs ? { } +, specialArgs ? throw "legacy - do not use, see error below" # Modules to add to each VM , extraConfigurations ? [ ] }: @@ -13,6 +14,13 @@ let nixos-lib = import ./default.nix { inherit (pkgs) lib; }; in +pkgs.lib.throwIf (args?specialArgs) '' + testing-python.nix: `specialArgs` is not supported anymore. If you're looking + for the public interface to the NixOS test framework, use `runTest`, and + `node.specialArgs`. + See https://nixos.org/manual/nixos/unstable/index.html#sec-calling-nixos-tests + and https://nixos.org/manual/nixos/unstable/index.html#test-opt-node.specialArgs +'' rec { inherit pkgs; diff --git a/nixos/modules/config/no-x-libs.nix b/nixos/modules/config/no-x-libs.nix index 3efadea823552..70e265a65a60c 100644 --- a/nixos/modules/config/no-x-libs.nix +++ b/nixos/modules/config/no-x-libs.nix @@ -33,9 +33,13 @@ with lib; ffmpeg_4 = super.ffmpeg_4-headless; ffmpeg_5 = super.ffmpeg_5-headless; gobject-introspection = super.gobject-introspection.override { x11Support = false; }; + gpsd = super.gpsd.override { guiSupport = false; }; imagemagick = super.imagemagick.override { libX11Support = false; libXtSupport = false; }; imagemagickBig = super.imagemagickBig.override { libX11Support = false; libXtSupport = false; }; + libextractor = super.libextractor.override { gstreamerSupport = false; gtkSupport = false; }; libva = super.libva-minimal; + limesuite = super.limesuite.override { withGui = false; }; + msmtp = super.msmtp.override { withKeyring = false; }; networkmanager-fortisslvpn = super.networkmanager-fortisslvpn.override { withGnome = false; }; networkmanager-iodine = super.networkmanager-iodine.override { withGnome = false; }; networkmanager-l2tp = super.networkmanager-l2tp.override { withGnome = false; }; diff --git a/nixos/modules/installer/cd-dvd/iso-image.nix b/nixos/modules/installer/cd-dvd/iso-image.nix index 5bd343c85fa25..81aca86173899 100644 --- a/nixos/modules/installer/cd-dvd/iso-image.nix +++ b/nixos/modules/installer/cd-dvd/iso-image.nix @@ -70,14 +70,12 @@ let ; # Timeout in syslinux is in units of 1/10 of a second. - # 0 is used to disable timeouts. + # null means max timeout (35996, just under 1h in 1/10 seconds) + # 0 means disable timeout syslinuxTimeout = if config.boot.loader.timeout == null then - 0 + 35996 else - max (config.boot.loader.timeout * 10) 1; - - - max = x: y: if x > y then x else y; + config.boot.loader.timeout * 10; # The configuration file for syslinux. diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index 6ec6c74565cd1..ac40b6cbfd97c 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -180,6 +180,7 @@ ./programs/hamster.nix ./programs/htop.nix ./programs/iftop.nix + ./programs/i3lock.nix ./programs/iotop.nix ./programs/java.nix ./programs/k3b.nix @@ -724,6 +725,7 @@ ./services/monitoring/riemann.nix ./services/monitoring/scollector.nix ./services/monitoring/smartd.nix + ./services/monitoring/statsd.nix ./services/monitoring/sysstat.nix ./services/monitoring/teamviewer.nix ./services/monitoring/telegraf.nix @@ -874,7 +876,6 @@ ./services/networking/miredo.nix ./services/networking/mjpg-streamer.nix ./services/networking/mmsd.nix - ./services/networking/mosquitto.nix ./services/networking/monero.nix ./services/networking/morty.nix ./services/networking/mosquitto.nix diff --git a/nixos/modules/profiles/keys/ssh_host_ed25519_key b/nixos/modules/profiles/keys/ssh_host_ed25519_key new file mode 100644 index 0000000000000..b18489795369e --- /dev/null +++ b/nixos/modules/profiles/keys/ssh_host_ed25519_key @@ -0,0 +1,7 @@ +-----BEGIN OPENSSH PRIVATE KEY----- +b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW +QyNTUxOQAAACCQVnMW/wZWqrdWrjrRPhfEFFq1KLYguagSflLhFnVQmwAAAJASuMMnErjD +JwAAAAtzc2gtZWQyNTUxOQAAACCQVnMW/wZWqrdWrjrRPhfEFFq1KLYguagSflLhFnVQmw +AAAEDIN2VWFyggtoSPXcAFy8dtG1uAig8sCuyE21eMDt2GgJBWcxb/Blaqt1auOtE+F8QU +WrUotiC5qBJ+UuEWdVCbAAAACnJvb3RAbml4b3MBAgM= +-----END OPENSSH PRIVATE KEY----- diff --git a/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub b/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub new file mode 100644 index 0000000000000..2c45826715fc5 --- /dev/null +++ b/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub @@ -0,0 +1 @@ +ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIJBWcxb/Blaqt1auOtE+F8QUWrUotiC5qBJ+UuEWdVCb root@nixos diff --git a/nixos/modules/profiles/macos-builder.nix b/nixos/modules/profiles/macos-builder.nix new file mode 100644 index 0000000000000..0cbac3bd61fed --- /dev/null +++ b/nixos/modules/profiles/macos-builder.nix @@ -0,0 +1,140 @@ +{ config, lib, pkgs, ... }: + +let + keysDirectory = "/var/keys"; + + user = "builder"; + + keyType = "ed25519"; + +in + +{ imports = [ + ../virtualisation/qemu-vm.nix + ]; + + # The builder is not intended to be used interactively + documentation.enable = false; + + environment.etc = { + "ssh/ssh_host_ed25519_key" = { + mode = "0600"; + + source = ./keys/ssh_host_ed25519_key; + }; + + "ssh/ssh_host_ed25519_key.pub" = { + mode = "0644"; + + source = ./keys/ssh_host_ed25519_key.pub; + }; + }; + + # DNS fails for QEMU user networking (SLiRP) on macOS. See: + # + # https://github.com/utmapp/UTM/issues/2353 + # + # This works around that by using a public DNS server other than the DNS + # server that QEMU provides (normally 10.0.2.3) + networking.nameservers = [ "8.8.8.8" ]; + + nix.settings = { + auto-optimise-store = true; + + min-free = 1024 * 1024 * 1024; + + max-free = 3 * 1024 * 1024 * 1024; + + trusted-users = [ "root" user ]; + }; + + services.openssh = { + enable = true; + + authorizedKeysFiles = [ "${keysDirectory}/%u_${keyType}.pub" ]; + }; + + system.build.macos-builder-installer = + let + privateKey = "/etc/nix/${user}_${keyType}"; + + publicKey = "${privateKey}.pub"; + + # This installCredentials script is written so that it's as easy as + # possible for a user to audit before confirming the `sudo` + installCredentials = hostPkgs.writeShellScript "install-credentials" '' + KEYS="''${1}" + INSTALL=${hostPkgs.coreutils}/bin/install + "''${INSTALL}" -g nixbld -m 600 "''${KEYS}/${user}_${keyType}" ${privateKey} + "''${INSTALL}" -g nixbld -m 644 "''${KEYS}/${user}_${keyType}.pub" ${publicKey} + ''; + + hostPkgs = config.virtualisation.host.pkgs; + + script = hostPkgs.writeShellScriptBin "create-builder" '' + KEYS="''${KEYS:-./keys}" + ${hostPkgs.coreutils}/bin/mkdir --parent "''${KEYS}" + PRIVATE_KEY="''${KEYS}/${user}_${keyType}" + PUBLIC_KEY="''${PRIVATE_KEY}.pub" + if [ ! -e "''${PRIVATE_KEY}" ] || [ ! -e "''${PUBLIC_KEY}" ]; then + ${hostPkgs.coreutils}/bin/rm --force -- "''${PRIVATE_KEY}" "''${PUBLIC_KEY}" + ${hostPkgs.openssh}/bin/ssh-keygen -q -f "''${PRIVATE_KEY}" -t ${keyType} -N "" -C 'builder@localhost' + fi + if ! ${hostPkgs.diffutils}/bin/cmp "''${PUBLIC_KEY}" ${publicKey}; then + (set -x; sudo --reset-timestamp ${installCredentials} "''${KEYS}") + fi + KEYS="$(nix-store --add "$KEYS")" ${config.system.build.vm}/bin/run-nixos-vm + ''; + + in + script.overrideAttrs (old: { + meta = (old.meta or { }) // { + platforms = lib.platforms.darwin; + }; + }); + + system.stateVersion = "22.05"; + + users.users."${user}"= { + isNormalUser = true; + }; + + virtualisation = { + diskSize = 20 * 1024; + + memorySize = 3 * 1024; + + forwardPorts = [ + { from = "host"; guest.port = 22; host.port = 22; } + ]; + + # Disable graphics for the builder since users will likely want to run it + # non-interactively in the background. + graphics = false; + + sharedDirectories.keys = { + source = "\"$KEYS\""; + target = keysDirectory; + }; + + # If we don't enable this option then the host will fail to delegate builds + # to the guest, because: + # + # - The host will lock the path to build + # - The host will delegate the build to the guest + # - The guest will attempt to lock the same path and fail because + # the lockfile on the host is visible on the guest + # + # Snapshotting the host's /nix/store as an image isolates the guest VM's + # /nix/store from the host's /nix/store, preventing this problem. + useNixStoreImage = true; + + # Obviously the /nix/store needs to be writable on the guest in order for it + # to perform builds. + writableStore = true; + + # This ensures that anything built on the guest isn't lost when the guest is + # restarted. + writableStoreUseTmpfs = false; + }; +} diff --git a/nixos/modules/programs/git.nix b/nixos/modules/programs/git.nix index acff5dfdd888a..4e271a8c134b2 100644 --- a/nixos/modules/programs/git.nix +++ b/nixos/modules/programs/git.nix @@ -20,15 +20,41 @@ in }; config = mkOption { - type = with types; attrsOf (attrsOf anything); - default = { }; + type = + with types; + let + gitini = attrsOf (attrsOf anything); + in + either gitini (listOf gitini) // { + merge = loc: defs: + let + config = foldl' + (acc: { value, ... }@x: acc // (if isList value then { + ordered = acc.ordered ++ value; + } else { + unordered = acc.unordered ++ [ x ]; + })) + { + ordered = [ ]; + unordered = [ ]; + } + defs; + in + [ (gitini.merge loc config.unordered) ] ++ config.ordered; + }; + default = [ ]; example = { init.defaultBranch = "main"; url."https://github.com/".insteadOf = [ "gh:" "github:" ]; }; description = lib.mdDoc '' - Configuration to write to /etc/gitconfig. See the CONFIGURATION FILE - section of git-config(1) for more information. + Configuration to write to /etc/gitconfig. A list can also be + specified to keep the configuration in order. For example, setting + `config` to `[ { foo.x = 42; } { bar.y = 42; }]` will put the `foo` + section before the `bar` section unlike the default alphabetical + order, which can be helpful for sections such as `include` and + `includeIf`. See the CONFIGURATION FILE section of git-config(1) for + more information. ''; }; @@ -48,8 +74,8 @@ in config = mkMerge [ (mkIf cfg.enable { environment.systemPackages = [ cfg.package ]; - environment.etc.gitconfig = mkIf (cfg.config != {}) { - text = generators.toGitINI cfg.config; + environment.etc.gitconfig = mkIf (cfg.config != [ ]) { + text = concatMapStringsSep "\n" generators.toGitINI cfg.config; }; }) (mkIf (cfg.enable && cfg.lfs.enable) { diff --git a/nixos/modules/programs/i3lock.nix b/nixos/modules/programs/i3lock.nix new file mode 100644 index 0000000000000..466ae59c9277f --- /dev/null +++ b/nixos/modules/programs/i3lock.nix @@ -0,0 +1,58 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + + cfg = config.programs.i3lock; + +in { + + ###### interface + + options = { + programs.i3lock = { + enable = mkEnableOption (mdDoc "i3lock"); + package = mkOption { + type = types.package; + default = pkgs.i3lock; + defaultText = literalExpression "pkgs.i3lock"; + example = literalExpression '' + pkgs.i3lock-color + ''; + description = mdDoc '' + Specify which package to use for the i3lock program, + The i3lock package must include a i3lock file or link in its out directory in order for the u2fSupport option to work correctly. + ''; + }; + u2fSupport = mkOption { + type = types.bool; + default = false; + example = true; + description = mdDoc '' + Whether to enable U2F support in the i3lock program. + U2F enables authentication using a hardware device, such as a security key. + When U2F support is enabled, the i3lock program will set the setuid bit on the i3lock binary and enable the pam u2fAuth service, + ''; + }; + }; + }; + + ###### implementation + + config = mkIf cfg.enable { + + environment.systemPackages = [ cfg.package ]; + + security.wrappers.i3lock = mkIf cfg.u2fSupport { + setuid = true; + owner = "root"; + group = "root"; + source = "${cfg.package.out}/bin/i3lock"; + }; + + security.pam.services.i3lock.u2fAuth = cfg.u2fSupport; + + }; + +} diff --git a/nixos/modules/services/blockchain/ethereum/lighthouse.nix b/nixos/modules/services/blockchain/ethereum/lighthouse.nix index 96d66e44d162f..863e737d908ae 100644 --- a/nixos/modules/services/blockchain/ethereum/lighthouse.nix +++ b/nixos/modules/services/blockchain/ethereum/lighthouse.nix @@ -280,7 +280,7 @@ in { ${pkgs.lighthouse}/bin/lighthouse validator_client \ --network ${cfg.network} \ --beacon-nodes ${lib.concatStringsSep "," cfg.validator.beaconNodes} \ - --datadir ${cfg.validator.dataDir}/${cfg.network} + --datadir ${cfg.validator.dataDir}/${cfg.network} \ ${optionalString cfg.validator.metrics.enable ''--metrics --metrics-address ${cfg.validator.metrics.address} --metrics-port ${toString cfg.validator.metrics.port}''} \ ${cfg.extraArgs} ${cfg.validator.extraArgs} ''; diff --git a/nixos/modules/services/display-managers/greetd.nix b/nixos/modules/services/display-managers/greetd.nix index 96eddc1ce7cdf..3a0f59f62afbd 100644 --- a/nixos/modules/services/display-managers/greetd.nix +++ b/nixos/modules/services/display-managers/greetd.nix @@ -89,6 +89,8 @@ in SendSIGHUP = true; TimeoutStopSec = "30s"; KeyringMode = "shared"; + + Type = "idle"; }; # Don't kill a user session when using nixos-rebuild diff --git a/nixos/modules/services/hardware/sane.nix b/nixos/modules/services/hardware/sane.nix index 60354c7644f7b..2cac2e8e8bb47 100644 --- a/nixos/modules/services/hardware/sane.nix +++ b/nixos/modules/services/hardware/sane.nix @@ -28,7 +28,7 @@ let }; env = { - SANE_CONFIG_DIR = "/etc/sane.d"; + SANE_CONFIG_DIR = "/etc/sane-config"; LD_LIBRARY_PATH = [ "/etc/sane-libs" ]; }; @@ -167,7 +167,7 @@ in environment.systemPackages = backends; environment.sessionVariables = env; - environment.etc."sane.d".source = config.hardware.sane.configDir; + environment.etc."sane-config".source = config.hardware.sane.configDir; environment.etc."sane-libs".source = "${saneConfig}/lib/sane"; services.udev.packages = backends; diff --git a/nixos/modules/services/misc/nitter.nix b/nixos/modules/services/misc/nitter.nix index 95394d9d2113e..f0cb5cc151388 100644 --- a/nixos/modules/services/misc/nitter.nix +++ b/nixos/modules/services/misc/nitter.nix @@ -47,7 +47,7 @@ in { options = { services.nitter = { - enable = mkEnableOption (lib.mdDoc "If enabled, start Nitter."); + enable = mkEnableOption (lib.mdDoc "Nitter"); package = mkOption { default = pkgs.nitter; diff --git a/nixos/modules/services/monitoring/grafana.nix b/nixos/modules/services/monitoring/grafana.nix index 5061666f57cec..9a9a0ab755325 100644 --- a/nixos/modules/services/monitoring/grafana.nix +++ b/nixos/modules/services/monitoring/grafana.nix @@ -555,7 +555,7 @@ in { auto_assign_org_role = mkOption { description = lib.mdDoc "Default role new users will be auto assigned."; default = "Viewer"; - type = types.enum ["Viewer" "Editor"]; + type = types.enum ["Viewer" "Editor" "Admin"]; }; }; diff --git a/nixos/modules/services/monitoring/prometheus/exporters.nix b/nixos/modules/services/monitoring/prometheus/exporters.nix index 2451f46ba7d75..f3fbfb149ad77 100644 --- a/nixos/modules/services/monitoring/prometheus/exporters.nix +++ b/nixos/modules/services/monitoring/prometheus/exporters.nix @@ -68,6 +68,7 @@ let "smartctl" "smokeping" "sql" + "statsd" "surfboard" "systemd" "tor" diff --git a/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix b/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix new file mode 100644 index 0000000000000..d9d732d8c125a --- /dev/null +++ b/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix @@ -0,0 +1,19 @@ +{ config, lib, pkgs, options }: + +with lib; + +let + cfg = config.services.prometheus.exporters.statsd; +in +{ + port = 9102; + serviceOpts = { + serviceConfig = { + ExecStart = '' + ${pkgs.prometheus-statsd-exporter}/bin/statsd_exporter \ + --web.listen-address ${cfg.listenAddress}:${toString cfg.port} \ + ${concatStringsSep " \\\n " cfg.extraFlags} + ''; + }; + }; +} diff --git a/nixos/modules/services/networking/firefox-syncserver.nix b/nixos/modules/services/networking/firefox-syncserver.nix index c3d9f43f74577..9733fb16d9032 100644 --- a/nixos/modules/services/networking/firefox-syncserver.nix +++ b/nixos/modules/services/networking/firefox-syncserver.nix @@ -11,8 +11,10 @@ let format = pkgs.formats.toml {}; settings = { - database_url = dbURL; human_logs = true; + syncstorage = { + database_url = dbURL; + }; tokenserver = { node_type = "mysql"; database_url = dbURL; @@ -253,8 +255,7 @@ in serviceConfig = { User = defaultUser; Group = defaultUser; - ExecStart = "${cfg.package}/bin/syncstorage --config ${configFile}"; - Stderr = "journal"; + ExecStart = "${cfg.package}/bin/syncserver --config ${configFile}"; EnvironmentFile = lib.mkIf (cfg.secrets != null) "${cfg.secrets}"; # hardening diff --git a/nixos/modules/services/networking/headscale.nix b/nixos/modules/services/networking/headscale.nix index 29b632ff5d22a..cc46819eed5a6 100644 --- a/nixos/modules/services/networking/headscale.nix +++ b/nixos/modules/services/networking/headscale.nix @@ -1,15 +1,18 @@ -{ config, lib, pkgs, ... }: -with lib; -let +{ + config, + lib, + pkgs, + ... +}: +with lib; let cfg = config.services.headscale; dataDir = "/var/lib/headscale"; runDir = "/run/headscale"; - settingsFormat = pkgs.formats.yaml { }; + settingsFormat = pkgs.formats.yaml {}; configFile = settingsFormat.generate "headscale.yaml" cfg.settings; -in -{ +in { options = { services.headscale = { enable = mkEnableOption (lib.mdDoc "headscale, Open Source coordination server for Tailscale"); @@ -51,15 +54,6 @@ in ''; }; - serverUrl = mkOption { - type = types.str; - default = "http://127.0.0.1:8080"; - description = lib.mdDoc '' - The url clients will connect to. - ''; - example = "https://myheadscale.example.com:443"; - }; - address = mkOption { type = types.str; default = "127.0.0.1"; @@ -78,337 +72,346 @@ in example = 443; }; - privateKeyFile = mkOption { - type = types.path; - default = "${dataDir}/private.key"; - description = lib.mdDoc '' - Path to private key file, generated automatically if it does not exist. - ''; - }; - - derp = { - urls = mkOption { - type = types.listOf types.str; - default = [ "https://controlplane.tailscale.com/derpmap/default" ]; - description = lib.mdDoc '' - List of urls containing DERP maps. - See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. - ''; - }; - - paths = mkOption { - type = types.listOf types.path; - default = [ ]; - description = lib.mdDoc '' - List of file paths containing DERP maps. - See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. - ''; - }; - - - autoUpdate = mkOption { - type = types.bool; - default = true; - description = lib.mdDoc '' - Whether to automatically update DERP maps on a set frequency. - ''; - example = false; - }; - - updateFrequency = mkOption { - type = types.str; - default = "24h"; - description = lib.mdDoc '' - Frequency to update DERP maps. - ''; - example = "5m"; - }; - - }; - - ephemeralNodeInactivityTimeout = mkOption { - type = types.str; - default = "30m"; - description = lib.mdDoc '' - Time before an inactive ephemeral node is deleted. - ''; - example = "5m"; - }; - - database = { - type = mkOption { - type = types.enum [ "sqlite3" "postgres" ]; - example = "postgres"; - default = "sqlite3"; - description = lib.mdDoc "Database engine to use."; - }; - - host = mkOption { - type = types.nullOr types.str; - default = null; - example = "127.0.0.1"; - description = lib.mdDoc "Database host address."; - }; - - port = mkOption { - type = types.nullOr types.port; - default = null; - example = 3306; - description = lib.mdDoc "Database host port."; - }; - - name = mkOption { - type = types.nullOr types.str; - default = null; - example = "headscale"; - description = lib.mdDoc "Database name."; - }; - - user = mkOption { - type = types.nullOr types.str; - default = null; - example = "headscale"; - description = lib.mdDoc "Database user."; - }; - - passwordFile = mkOption { - type = types.nullOr types.path; - default = null; - example = "/run/keys/headscale-dbpassword"; - description = lib.mdDoc '' - A file containing the password corresponding to - {option}`database.user`. - ''; - }; - - path = mkOption { - type = types.nullOr types.str; - default = "${dataDir}/db.sqlite"; - description = lib.mdDoc "Path to the sqlite3 database file."; - }; - }; - - logLevel = mkOption { - type = types.str; - default = "info"; - description = lib.mdDoc '' - headscale log level. - ''; - example = "debug"; - }; - - dns = { - nameservers = mkOption { - type = types.listOf types.str; - default = [ "1.1.1.1" ]; - description = lib.mdDoc '' - List of nameservers to pass to Tailscale clients. - ''; - }; - - domains = mkOption { - type = types.listOf types.str; - default = [ ]; - description = lib.mdDoc '' - Search domains to inject to Tailscale clients. - ''; - example = [ "mydomain.internal" ]; - }; - - magicDns = mkOption { - type = types.bool; - default = true; - description = lib.mdDoc '' - Whether to use [MagicDNS](https://tailscale.com/kb/1081/magicdns/). - Only works if there is at least a nameserver defined. - ''; - example = false; - }; - - baseDomain = mkOption { - type = types.str; - default = ""; - description = lib.mdDoc '' - Defines the base domain to create the hostnames for MagicDNS. - {option}`baseDomain` must be a FQDNs, without the trailing dot. - The FQDN of the hosts will be - `hostname.namespace.base_domain` (e.g. - `myhost.mynamespace.example.com`). - ''; - }; - }; - - openIdConnect = { - issuer = mkOption { - type = types.str; - default = ""; - description = lib.mdDoc '' - URL to OpenID issuer. - ''; - example = "https://openid.example.com"; - }; - - clientId = mkOption { - type = types.str; - default = ""; - description = lib.mdDoc '' - OpenID Connect client ID. - ''; - }; - - clientSecretFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to OpenID Connect client secret file. - ''; - }; - - domainMap = mkOption { - type = types.attrsOf types.str; - default = { }; - description = lib.mdDoc '' - Domain map is used to map incoming users (by their email) to - a namespace. The key can be a string, or regex. - ''; - example = { - ".*" = "default-namespace"; - }; - }; - - }; - - tls = { - letsencrypt = { - hostname = mkOption { - type = types.nullOr types.str; - default = ""; - description = lib.mdDoc '' - Domain name to request a TLS certificate for. - ''; - }; - challengeType = mkOption { - type = types.enum [ "TLS-ALPN-01" "HTTP-01" ]; - default = "HTTP-01"; - description = lib.mdDoc '' - Type of ACME challenge to use, currently supported types: - `HTTP-01` or `TLS-ALPN-01`. - ''; - }; - httpListen = mkOption { - type = types.nullOr types.str; - default = ":http"; - description = lib.mdDoc '' - When HTTP-01 challenge is chosen, letsencrypt must set up a - verification endpoint, and it will be listening on: - `:http = port 80`. - ''; - }; - }; - - certFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to already created certificate. - ''; - }; - keyFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to key for already created certificate. - ''; - }; - }; - - aclPolicyFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to a file containing ACL policies. - ''; - }; - settings = mkOption { - type = settingsFormat.type; - default = { }; description = lib.mdDoc '' Overrides to {file}`config.yaml` as a Nix attribute set. - This option is ideal for overriding settings not exposed as Nix options. Check the [example config](https://github.com/juanfont/headscale/blob/main/config-example.yaml) for possible options. ''; + type = types.submodule { + freeformType = settingsFormat.type; + + options = { + server_url = mkOption { + type = types.str; + default = "http://127.0.0.1:8080"; + description = lib.mdDoc '' + The url clients will connect to. + ''; + example = "https://myheadscale.example.com:443"; + }; + + private_key_path = mkOption { + type = types.path; + default = "${dataDir}/private.key"; + description = lib.mdDoc '' + Path to private key file, generated automatically if it does not exist. + ''; + }; + + noise.private_key_path = mkOption { + type = types.path; + default = "${dataDir}/noise_private.key"; + description = lib.mdDoc '' + Path to noise private key file, generated automatically if it does not exist. + ''; + }; + + derp = { + urls = mkOption { + type = types.listOf types.str; + default = ["https://controlplane.tailscale.com/derpmap/default"]; + description = lib.mdDoc '' + List of urls containing DERP maps. + See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. + ''; + }; + + paths = mkOption { + type = types.listOf types.path; + default = []; + description = lib.mdDoc '' + List of file paths containing DERP maps. + See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. + ''; + }; + + auto_update_enable = mkOption { + type = types.bool; + default = true; + description = lib.mdDoc '' + Whether to automatically update DERP maps on a set frequency. + ''; + example = false; + }; + + update_frequency = mkOption { + type = types.str; + default = "24h"; + description = lib.mdDoc '' + Frequency to update DERP maps. + ''; + example = "5m"; + }; + }; + + ephemeral_node_inactivity_timeout = mkOption { + type = types.str; + default = "30m"; + description = lib.mdDoc '' + Time before an inactive ephemeral node is deleted. + ''; + example = "5m"; + }; + + db_type = mkOption { + type = types.enum ["sqlite3" "postgres"]; + example = "postgres"; + default = "sqlite3"; + description = lib.mdDoc "Database engine to use."; + }; + + db_host = mkOption { + type = types.nullOr types.str; + default = null; + example = "127.0.0.1"; + description = lib.mdDoc "Database host address."; + }; + + db_port = mkOption { + type = types.nullOr types.port; + default = null; + example = 3306; + description = lib.mdDoc "Database host port."; + }; + + db_name = mkOption { + type = types.nullOr types.str; + default = null; + example = "headscale"; + description = lib.mdDoc "Database name."; + }; + + db_user = mkOption { + type = types.nullOr types.str; + default = null; + example = "headscale"; + description = lib.mdDoc "Database user."; + }; + + db_password_file = mkOption { + type = types.nullOr types.path; + default = null; + example = "/run/keys/headscale-dbpassword"; + description = lib.mdDoc '' + A file containing the password corresponding to + {option}`database.user`. + ''; + }; + + db_path = mkOption { + type = types.nullOr types.str; + default = "${dataDir}/db.sqlite"; + description = lib.mdDoc "Path to the sqlite3 database file."; + }; + + log.level = mkOption { + type = types.str; + default = "info"; + description = lib.mdDoc '' + headscale log level. + ''; + example = "debug"; + }; + + log.format = mkOption { + type = types.str; + default = "text"; + description = lib.mdDoc '' + headscale log format. + ''; + example = "json"; + }; + + dns_config = { + nameservers = mkOption { + type = types.listOf types.str; + default = ["1.1.1.1"]; + description = lib.mdDoc '' + List of nameservers to pass to Tailscale clients. + ''; + }; + + override_local_dns = mkOption { + type = types.bool; + default = false; + description = lib.mdDoc '' + Whether to use [Override local DNS](https://tailscale.com/kb/1054/dns/). + ''; + example = true; + }; + + domains = mkOption { + type = types.listOf types.str; + default = []; + description = lib.mdDoc '' + Search domains to inject to Tailscale clients. + ''; + example = ["mydomain.internal"]; + }; + + magic_dns = mkOption { + type = types.bool; + default = true; + description = lib.mdDoc '' + Whether to use [MagicDNS](https://tailscale.com/kb/1081/magicdns/). + Only works if there is at least a nameserver defined. + ''; + example = false; + }; + + base_domain = mkOption { + type = types.str; + default = ""; + description = lib.mdDoc '' + Defines the base domain to create the hostnames for MagicDNS. + {option}`baseDomain` must be a FQDNs, without the trailing dot. + The FQDN of the hosts will be + `hostname.namespace.base_domain` (e.g. + `myhost.mynamespace.example.com`). + ''; + }; + }; + + oidc = { + issuer = mkOption { + type = types.str; + default = ""; + description = lib.mdDoc '' + URL to OpenID issuer. + ''; + example = "https://openid.example.com"; + }; + + client_id = mkOption { + type = types.str; + default = ""; + description = lib.mdDoc '' + OpenID Connect client ID. + ''; + }; + + client_secret_file = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to OpenID Connect client secret file. + ''; + }; + + domain_map = mkOption { + type = types.attrsOf types.str; + default = {}; + description = lib.mdDoc '' + Domain map is used to map incomming users (by their email) to + a namespace. The key can be a string, or regex. + ''; + example = { + ".*" = "default-namespace"; + }; + }; + }; + + tls_letsencrypt_hostname = mkOption { + type = types.nullOr types.str; + default = ""; + description = lib.mdDoc '' + Domain name to request a TLS certificate for. + ''; + }; + + tls_letsencrypt_challenge_type = mkOption { + type = types.enum ["TLS-ALPN-01" "HTTP-01"]; + default = "HTTP-01"; + description = lib.mdDoc '' + Type of ACME challenge to use, currently supported types: + `HTTP-01` or `TLS-ALPN-01`. + ''; + }; + + tls_letsencrypt_listen = mkOption { + type = types.nullOr types.str; + default = ":http"; + description = lib.mdDoc '' + When HTTP-01 challenge is chosen, letsencrypt must set up a + verification endpoint, and it will be listening on: + `:http = port 80`. + ''; + }; + + tls_cert_path = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to already created certificate. + ''; + }; + + tls_key_path = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to key for already created certificate. + ''; + }; + + acl_policy_path = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to a file containg ACL policies. + ''; + }; + }; + }; }; - - }; - }; - config = mkIf cfg.enable { + imports = [ + # TODO address + port = listen_addr + (mkRenamedOptionModule ["services" "headscale" "serverUrl"] ["services" "headscale" "settings" "server_url"]) + (mkRenamedOptionModule ["services" "headscale" "privateKeyFile"] ["services" "headscale" "settings" "private_key_path"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "urls"] ["services" "headscale" "settings" "derp" "urls"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "paths"] ["services" "headscale" "settings" "derp" "paths"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "autoUpdate"] ["services" "headscale" "settings" "derp" "auto_update_enable"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "updateFrequency"] ["services" "headscale" "settings" "derp" "update_frequency"]) + (mkRenamedOptionModule ["services" "headscale" "ephemeralNodeInactivityTimeout"] ["services" "headscale" "settings" "ephemeral_node_inactivity_timeout"]) + (mkRenamedOptionModule ["services" "headscale" "database" "type"] ["services" "headscale" "settings" "db_type"]) + (mkRenamedOptionModule ["services" "headscale" "database" "path"] ["services" "headscale" "settings" "db_path"]) + (mkRenamedOptionModule ["services" "headscale" "database" "host"] ["services" "headscale" "settings" "db_host"]) + (mkRenamedOptionModule ["services" "headscale" "database" "port"] ["services" "headscale" "settings" "db_port"]) + (mkRenamedOptionModule ["services" "headscale" "database" "name"] ["services" "headscale" "settings" "db_name"]) + (mkRenamedOptionModule ["services" "headscale" "database" "user"] ["services" "headscale" "settings" "db_user"]) + (mkRenamedOptionModule ["services" "headscale" "database" "passwordFile"] ["services" "headscale" "settings" "db_password_file"]) + (mkRenamedOptionModule ["services" "headscale" "logLevel"] ["services" "headscale" "settings" "log" "level"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "nameservers"] ["services" "headscale" "settings" "dns_config" "nameservers"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "domains"] ["services" "headscale" "settings" "dns_config" "domains"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "magicDns"] ["services" "headscale" "settings" "dns_config" "magic_dns"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "baseDomain"] ["services" "headscale" "settings" "dns_config" "base_domain"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "issuer"] ["services" "headscale" "settings" "oidc" "issuer"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "clientId"] ["services" "headscale" "settings" "oidc" "client_id"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "clientSecretFile"] ["services" "headscale" "settings" "oidc" "client_secret_file"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "domainMap"] ["services" "headscale" "settings" "oidc" "domain_map"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "letsencrypt" "hostname"] ["services" "headscale" "settings" "tls_letsencrypt_hostname"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "letsencrypt" "challengeType"] ["services" "headscale" "settings" "tls_letsencrypt_challenge_type"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "letsencrypt" "httpListen"] ["services" "headscale" "settings" "tls_letsencrypt_listen"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "certFile"] ["services" "headscale" "settings" "tls_cert_path"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "keyFile"] ["services" "headscale" "settings" "tls_key_path"]) + (mkRenamedOptionModule ["services" "headscale" "aclPolicyFile"] ["services" "headscale" "settings" "acl_policy_path"]) + ]; + + config = mkIf cfg.enable { services.headscale.settings = { - server_url = mkDefault cfg.serverUrl; listen_addr = mkDefault "${cfg.address}:${toString cfg.port}"; - private_key_path = mkDefault cfg.privateKeyFile; - - derp = { - urls = mkDefault cfg.derp.urls; - paths = mkDefault cfg.derp.paths; - auto_update_enable = mkDefault cfg.derp.autoUpdate; - update_frequency = mkDefault cfg.derp.updateFrequency; - }; - # Turn off update checks since the origin of our package # is nixpkgs and not Github. disable_check_updates = true; - ephemeral_node_inactivity_timeout = mkDefault cfg.ephemeralNodeInactivityTimeout; - - db_type = mkDefault cfg.database.type; - db_path = mkDefault cfg.database.path; - - log_level = mkDefault cfg.logLevel; - - dns_config = { - nameservers = mkDefault cfg.dns.nameservers; - domains = mkDefault cfg.dns.domains; - magic_dns = mkDefault cfg.dns.magicDns; - base_domain = mkDefault cfg.dns.baseDomain; - }; - unix_socket = "${runDir}/headscale.sock"; - # OpenID Connect - oidc = { - issuer = mkDefault cfg.openIdConnect.issuer; - client_id = mkDefault cfg.openIdConnect.clientId; - domain_map = mkDefault cfg.openIdConnect.domainMap; - }; - tls_letsencrypt_cache_dir = "${dataDir}/.cache"; - - } // optionalAttrs (cfg.database.host != null) { - db_host = mkDefault cfg.database.host; - } // optionalAttrs (cfg.database.port != null) { - db_port = mkDefault cfg.database.port; - } // optionalAttrs (cfg.database.name != null) { - db_name = mkDefault cfg.database.name; - } // optionalAttrs (cfg.database.user != null) { - db_user = mkDefault cfg.database.user; - } // optionalAttrs (cfg.tls.letsencrypt.hostname != null) { - tls_letsencrypt_hostname = mkDefault cfg.tls.letsencrypt.hostname; - } // optionalAttrs (cfg.tls.letsencrypt.challengeType != null) { - tls_letsencrypt_challenge_type = mkDefault cfg.tls.letsencrypt.challengeType; - } // optionalAttrs (cfg.tls.letsencrypt.httpListen != null) { - tls_letsencrypt_listen = mkDefault cfg.tls.letsencrypt.httpListen; - } // optionalAttrs (cfg.tls.certFile != null) { - tls_cert_path = mkDefault cfg.tls.certFile; - } // optionalAttrs (cfg.tls.keyFile != null) { - tls_key_path = mkDefault cfg.tls.keyFile; - } // optionalAttrs (cfg.aclPolicyFile != null) { - acl_policy_path = mkDefault cfg.aclPolicyFile; }; # Setup the headscale configuration in a known path in /etc to @@ -416,7 +419,7 @@ in # for communication. environment.etc."headscale/config.yaml".source = configFile; - users.groups.headscale = mkIf (cfg.group == "headscale") { }; + users.groups.headscale = mkIf (cfg.group == "headscale") {}; users.users.headscale = mkIf (cfg.user == "headscale") { description = "headscale user"; @@ -427,70 +430,68 @@ in systemd.services.headscale = { description = "headscale coordination server for Tailscale"; - after = [ "network-online.target" ]; - wantedBy = [ "multi-user.target" ]; - restartTriggers = [ configFile ]; + after = ["network-online.target"]; + wantedBy = ["multi-user.target"]; + restartTriggers = [configFile]; environment.GIN_MODE = "release"; script = '' - ${optionalString (cfg.database.passwordFile != null) '' - export HEADSCALE_DB_PASS="$(head -n1 ${escapeShellArg cfg.database.passwordFile})" + ${optionalString (cfg.settings.db_password_file != null) '' + export HEADSCALE_DB_PASS="$(head -n1 ${escapeShellArg cfg.settings.db_password_file})" ''} - ${optionalString (cfg.openIdConnect.clientSecretFile != null) '' - export HEADSCALE_OIDC_CLIENT_SECRET="$(head -n1 ${escapeShellArg cfg.openIdConnect.clientSecretFile})" + ${optionalString (cfg.settings.oidc.client_secret_file != null) '' + export HEADSCALE_OIDC_CLIENT_SECRET="$(head -n1 ${escapeShellArg cfg.settings.oidc.client_secret_file})" ''} exec ${cfg.package}/bin/headscale serve ''; - serviceConfig = - let - capabilityBoundingSet = [ "CAP_CHOWN" ] ++ optional (cfg.port < 1024) "CAP_NET_BIND_SERVICE"; - in - { - Restart = "always"; - Type = "simple"; - User = cfg.user; - Group = cfg.group; - - # Hardening options - RuntimeDirectory = "headscale"; - # Allow headscale group access so users can be added and use the CLI. - RuntimeDirectoryMode = "0750"; - - StateDirectory = "headscale"; - StateDirectoryMode = "0750"; - - ProtectSystem = "strict"; - ProtectHome = true; - PrivateTmp = true; - PrivateDevices = true; - ProtectKernelTunables = true; - ProtectControlGroups = true; - RestrictSUIDSGID = true; - PrivateMounts = true; - ProtectKernelModules = true; - ProtectKernelLogs = true; - ProtectHostname = true; - ProtectClock = true; - ProtectProc = "invisible"; - ProcSubset = "pid"; - RestrictNamespaces = true; - RemoveIPC = true; - UMask = "0077"; - - CapabilityBoundingSet = capabilityBoundingSet; - AmbientCapabilities = capabilityBoundingSet; - NoNewPrivileges = true; - LockPersonality = true; - RestrictRealtime = true; - SystemCallFilter = [ "@system-service" "~@privileged" "@chown" ]; - SystemCallArchitectures = "native"; - RestrictAddressFamilies = "AF_INET AF_INET6 AF_UNIX"; - }; + serviceConfig = let + capabilityBoundingSet = ["CAP_CHOWN"] ++ optional (cfg.port < 1024) "CAP_NET_BIND_SERVICE"; + in { + Restart = "always"; + Type = "simple"; + User = cfg.user; + Group = cfg.group; + + # Hardening options + RuntimeDirectory = "headscale"; + # Allow headscale group access so users can be added and use the CLI. + RuntimeDirectoryMode = "0750"; + + StateDirectory = "headscale"; + StateDirectoryMode = "0750"; + + ProtectSystem = "strict"; + ProtectHome = true; + PrivateTmp = true; + PrivateDevices = true; + ProtectKernelTunables = true; + ProtectControlGroups = true; + RestrictSUIDSGID = true; + PrivateMounts = true; + ProtectKernelModules = true; + ProtectKernelLogs = true; + ProtectHostname = true; + ProtectClock = true; + ProtectProc = "invisible"; + ProcSubset = "pid"; + RestrictNamespaces = true; + RemoveIPC = true; + UMask = "0077"; + + CapabilityBoundingSet = capabilityBoundingSet; + AmbientCapabilities = capabilityBoundingSet; + NoNewPrivileges = true; + LockPersonality = true; + RestrictRealtime = true; + SystemCallFilter = ["@system-service" "~@privileged" "@chown"]; + SystemCallArchitectures = "native"; + RestrictAddressFamilies = "AF_INET AF_INET6 AF_UNIX"; + }; }; }; - meta.maintainers = with maintainers; [ kradalby ]; + meta.maintainers = with maintainers; [kradalby misterio77]; } diff --git a/nixos/modules/services/networking/pixiecore.nix b/nixos/modules/services/networking/pixiecore.nix index ea4008d4d5151..f410be4716466 100644 --- a/nixos/modules/services/networking/pixiecore.nix +++ b/nixos/modules/services/networking/pixiecore.nix @@ -23,7 +23,7 @@ in mode = mkOption { description = lib.mdDoc "Which mode to use"; default = "boot"; - type = types.enum [ "api" "boot" ]; + type = types.enum [ "api" "boot" "quick" ]; }; debug = mkOption { @@ -38,6 +38,12 @@ in description = lib.mdDoc "Handle DHCP traffic without binding to the DHCP server port"; }; + quick = mkOption { + description = lib.mdDoc "Which quick option to use"; + default = "xyz"; + type = types.enum [ "arch" "centos" "coreos" "debian" "fedora" "ubuntu" "xyz" ]; + }; + kernel = mkOption { type = types.str or types.path; default = ""; @@ -117,6 +123,8 @@ in then [ "boot" cfg.kernel ] ++ optional (cfg.initrd != "") cfg.initrd ++ optionals (cfg.cmdLine != "") [ "--cmdline" cfg.cmdLine ] + else if cfg.mode == "quick" + then [ "quick" cfg.quick ] else [ "api" cfg.apiServer ]; in '' diff --git a/nixos/modules/services/networking/pleroma.nix b/nixos/modules/services/networking/pleroma.nix index 188598ea7b869..f317510258ba5 100644 --- a/nixos/modules/services/networking/pleroma.nix +++ b/nixos/modules/services/networking/pleroma.nix @@ -141,6 +141,8 @@ in { NoNewPrivileges = true; CapabilityBoundingSet = "~CAP_SYS_ADMIN"; }; + # disksup requires bash + path = [ pkgs.bash ]; }; }; diff --git a/nixos/modules/services/networking/rpcbind.nix b/nixos/modules/services/networking/rpcbind.nix index aa04214debb0a..60e78dfec51ba 100644 --- a/nixos/modules/services/networking/rpcbind.nix +++ b/nixos/modules/services/networking/rpcbind.nix @@ -35,6 +35,16 @@ with lib; systemd.services.rpcbind = { wantedBy = [ "multi-user.target" ]; + # rpcbind performs a check for /var/run/rpcbind.lock at startup + # and will crash if /var/run isn't present. In the stock NixOS + # var.conf tmpfiles configuration file, /var/run is symlinked to + # /run, so rpcbind can enter a race condition in which /var/run + # isn't symlinked yet but tries to interact with the path, so + # controlling the order explicitly here ensures that rpcbind can + # start successfully. The `wants` instead of `requires` should + # avoid creating a strict/brittle dependency. + wants = [ "systemd-tmpfiles-setup.service" ]; + after = [ "systemd-tmpfiles-setup.service" ]; }; users.users.rpc = { diff --git a/nixos/modules/services/networking/tox-node.nix b/nixos/modules/services/networking/tox-node.nix index fa5b241f91836..884fd55dae51d 100644 --- a/nixos/modules/services/networking/tox-node.nix +++ b/nixos/modules/services/networking/tox-node.nix @@ -8,7 +8,7 @@ let homeDir = "/var/lib/tox-node"; configFile = let - src = "${pkg.src}/dpkg/config.yml"; + src = "${pkg.src}/tox_node/dpkg/config.yml"; confJSON = pkgs.writeText "config.json" ( builtins.toJSON { log-type = cfg.logType; diff --git a/nixos/modules/services/security/aesmd.nix b/nixos/modules/services/security/aesmd.nix index 7b0a46d6d029c..8b3f010d7c4d0 100644 --- a/nixos/modules/services/security/aesmd.nix +++ b/nixos/modules/services/security/aesmd.nix @@ -25,6 +25,22 @@ in default = false; description = lib.mdDoc "Whether to build the PSW package in debug mode."; }; + environment = mkOption { + type = with types; attrsOf str; + default = { }; + description = mdDoc "Additional environment variables to pass to the AESM service."; + # Example environment variable for `sgx-azure-dcap-client` provider library + example = { + AZDCAP_COLLATERAL_VERSION = "v2"; + AZDCAP_DEBUG_LOG_LEVEL = "INFO"; + }; + }; + quoteProviderLibrary = mkOption { + type = with types; nullOr path; + default = null; + example = literalExpression "pkgs.sgx-azure-dcap-client"; + description = lib.mdDoc "Custom quote provider library to use."; + }; settings = mkOption { description = lib.mdDoc "AESM configuration"; default = { }; @@ -83,7 +99,6 @@ in storeAesmFolder = "${sgx-psw}/aesm"; # Hardcoded path AESM_DATA_FOLDER in psw/ae/aesm_service/source/oal/linux/aesm_util.cpp aesmDataFolder = "/var/opt/aesmd/data"; - aesmStateDirSystemd = "%S/aesmd"; in { description = "Intel Architectural Enclave Service Manager"; @@ -98,8 +113,8 @@ in environment = { NAME = "aesm_service"; AESM_PATH = storeAesmFolder; - LD_LIBRARY_PATH = storeAesmFolder; - }; + LD_LIBRARY_PATH = makeLibraryPath [ cfg.quoteProviderLibrary ]; + } // cfg.environment; # Make sure any of the SGX application enclave devices is available unitConfig.AssertPathExists = [ diff --git a/nixos/modules/services/web-apps/dolibarr.nix b/nixos/modules/services/web-apps/dolibarr.nix index 5335c439329c0..f262099354d2c 100644 --- a/nixos/modules/services/web-apps/dolibarr.nix +++ b/nixos/modules/services/web-apps/dolibarr.nix @@ -1,11 +1,11 @@ { config, pkgs, lib, ... }: let - inherit (lib) any boolToString concatStringsSep isBool isString literalExpression mapAttrsToList mkDefault mkEnableOption mkIf mkOption optionalAttrs types; + inherit (lib) any boolToString concatStringsSep isBool isString mapAttrsToList mkDefault mkEnableOption mkIf mkMerge mkOption optionalAttrs types; package = pkgs.dolibarr.override { inherit (cfg) stateDir; }; cfg = config.services.dolibarr; - vhostCfg = config.services.nginx.virtualHosts."${cfg.domain}"; + vhostCfg = lib.optionalAttr (cfg.nginx != null) config.services.nginx.virtualHosts."${cfg.domain}"; mkConfigFile = filename: settings: let @@ -38,7 +38,7 @@ let force_install_database = cfg.database.name; force_install_databaselogin = cfg.database.user; - force_install_mainforcehttps = vhostCfg.forceSSL; + force_install_mainforcehttps = vhostCfg.forceSSL or false; force_install_createuser = false; force_install_dolibarrlogin = null; } // optionalAttrs (cfg.database.passwordFile != null) { @@ -183,7 +183,8 @@ in }; # implementation - config = mkIf cfg.enable { + config = mkIf cfg.enable (mkMerge [ + { assertions = [ { assertion = cfg.database.createLocally -> cfg.database.user == cfg.user; @@ -214,7 +215,7 @@ in # Security settings dolibarr_main_prod = true; - dolibarr_main_force_https = vhostCfg.forceSSL; + dolibarr_main_force_https = vhostCfg.forceSSL or false; dolibarr_main_restrict_os_commands = "${pkgs.mariadb}/bin/mysqldump, ${pkgs.mariadb}/bin/mysql"; dolibarr_nocsrfcheck = false; dolibarr_main_instance_unique_id = '' @@ -314,7 +315,9 @@ in users.groups = optionalAttrs (cfg.group == "dolibarr") { dolibarr = { }; }; - - users.users."${config.services.nginx.group}".extraGroups = [ cfg.group ]; - }; + } + (mkIf (cfg.nginx != null) { + users.users."${config.services.nginx.group}".extraGroups = mkIf (cfg.nginx != null) [ cfg.group ]; + }) +]); } diff --git a/nixos/modules/services/web-apps/peertube.nix b/nixos/modules/services/web-apps/peertube.nix index 4dbcb09d2ae28..7e418f2869c85 100644 --- a/nixos/modules/services/web-apps/peertube.nix +++ b/nixos/modules/services/web-apps/peertube.nix @@ -161,6 +161,18 @@ in { description = lib.mdDoc "Configure nginx as a reverse proxy for peertube."; }; + secrets = { + secretsFile = lib.mkOption { + type = lib.types.nullOr lib.types.path; + default = null; + example = "/run/secrets/peertube"; + description = lib.mdDoc '' + Secrets to run PeerTube. + Generate one using `openssl rand -hex 32` + ''; + }; + }; + database = { createLocally = lib.mkOption { type = lib.types.bool; @@ -201,7 +213,7 @@ in { passwordFile = lib.mkOption { type = lib.types.nullOr lib.types.path; default = null; - example = "/run/keys/peertube/password-posgressql-db"; + example = "/run/keys/peertube/password-postgresql"; description = lib.mdDoc "Password for PostgreSQL database."; }; }; @@ -282,6 +294,11 @@ in { prevent this. ''; } + { assertion = cfg.secrets.secretsFile != null; + message = '' + <option>services.peertube.secrets.secretsFile</option> needs to be set. + ''; + } { assertion = !(cfg.redis.enableUnixSocket && (cfg.redis.host != null || cfg.redis.port != null)); message = '' <option>services.peertube.redis.createLocally</option> and redis network connection (<option>services.peertube.redis.host</option> or <option>services.peertube.redis.port</option>) enabled. Disable either of them. @@ -349,6 +366,7 @@ in { captions = lib.mkDefault "/var/lib/peertube/storage/captions/"; cache = lib.mkDefault "/var/lib/peertube/storage/cache/"; plugins = lib.mkDefault "/var/lib/peertube/storage/plugins/"; + well_known = lib.mkDefault "/var/lib/peertube/storage/well_known/"; client_overrides = lib.mkDefault "/var/lib/peertube/storage/client-overrides/"; }; import = { @@ -417,6 +435,10 @@ in { #!/bin/sh umask 077 cat > /var/lib/peertube/config/local.yaml <<EOF + ${lib.optionalString (cfg.secrets.secretsFile != null) '' + secrets: + peertube: '$(cat ${cfg.secrets.secretsFile})' + ''} ${lib.optionalString ((!cfg.database.createLocally) && (cfg.database.passwordFile != null)) '' database: password: '$(cat ${cfg.database.passwordFile})' @@ -443,6 +465,7 @@ in { RestartSec = 20; TimeoutSec = 60; WorkingDirectory = cfg.package; + SyslogIdentifier = "peertube"; # User and group User = cfg.user; Group = cfg.group; @@ -548,9 +571,14 @@ in { ''; }; + locations."~ ^/plugins/[^/]+(/[^/]+)?/ws/" = { + tryFiles = "/dev/null @api_websocket"; + priority = 1230; + }; + locations."@api_websocket" = { proxyPass = "http://127.0.0.1:${toString cfg.listenHttp}"; - priority = 1230; + priority = 1240; extraConfig = '' proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; @@ -581,7 +609,7 @@ in { ''; }; - locations."~ ^/lazy-static/(avatars|banners)/" = { + locations."^~ /lazy-static/avatars/" = { tryFiles = "$uri @api"; root = cfg.settings.storage.avatars; priority = 1330; @@ -599,6 +627,26 @@ in { add_header Cache-Control 'public, max-age=7200'; rewrite ^/lazy-static/avatars/(.*)$ /$1 break; + ''; + }; + + locations."^~ /lazy-static/banners/" = { + tryFiles = "$uri @api"; + root = cfg.settings.storage.avatars; + priority = 1340; + extraConfig = '' + if ($request_method = 'OPTIONS') { + ${nginxCommonHeaders} + add_header Access-Control-Max-Age 1728000; + add_header Cache-Control 'no-cache'; + add_header Content-Type 'text/plain charset=UTF-8'; + add_header Content-Length 0; + return 204; + } + + ${nginxCommonHeaders} + add_header Cache-Control 'public, max-age=7200'; + rewrite ^/lazy-static/banners/(.*)$ /$1 break; ''; }; @@ -606,7 +654,7 @@ in { locations."^~ /lazy-static/previews/" = { tryFiles = "$uri @api"; root = cfg.settings.storage.previews; - priority = 1340; + priority = 1350; extraConfig = '' if ($request_method = 'OPTIONS') { ${nginxCommonHeaders} @@ -624,10 +672,34 @@ in { ''; }; + locations."^~ /static/streaming-playlists/private/" = { + proxyPass = "http://127.0.0.1:${toString cfg.listenHttp}"; + priority = 1410; + extraConfig = '' + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header Host $host; + proxy_set_header X-Real-IP $remote_addr; + + proxy_limit_rate 5M; + ''; + }; + + locations."^~ /static/webseed/private/" = { + proxyPass = "http://127.0.0.1:${toString cfg.listenHttp}"; + priority = 1420; + extraConfig = '' + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header Host $host; + proxy_set_header X-Real-IP $remote_addr; + + proxy_limit_rate 5M; + ''; + }; + locations."^~ /static/thumbnails/" = { tryFiles = "$uri @api"; root = cfg.settings.storage.thumbnails; - priority = 1350; + priority = 1430; extraConfig = '' if ($request_method = 'OPTIONS') { ${nginxCommonHeaders} @@ -648,8 +720,14 @@ in { locations."^~ /static/redundancy/" = { tryFiles = "$uri @api"; root = cfg.settings.storage.redundancy; - priority = 1360; + priority = 1440; extraConfig = '' + set $peertube_limit_rate 800k; + + if ($request_uri ~ -fragmented.mp4$) { + set $peertube_limit_rate 5M; + } + if ($request_method = 'OPTIONS') { ${nginxCommonHeaders} add_header Access-Control-Max-Age 1728000; @@ -662,15 +740,14 @@ in { access_log off; } + aio threads; sendfile on; sendfile_max_chunk 1M; + limit_rate $peertube_limit_rate; limit_rate_after 5M; - set $peertube_limit_rate 800k; - set $limit_rate $peertube_limit_rate; - rewrite ^/static/redundancy/(.*)$ /$1 break; ''; }; @@ -678,8 +755,14 @@ in { locations."^~ /static/streaming-playlists/" = { tryFiles = "$uri @api"; root = cfg.settings.storage.streaming_playlists; - priority = 1370; + priority = 1450; extraConfig = '' + set $peertube_limit_rate 800k; + + if ($request_uri ~ -fragmented.mp4$) { + set $peertube_limit_rate 5M; + } + if ($request_method = 'OPTIONS') { ${nginxCommonHeaders} add_header Access-Control-Max-Age 1728000; @@ -697,20 +780,24 @@ in { sendfile on; sendfile_max_chunk 1M; + limit_rate $peertube_limit_rate; limit_rate_after 5M; - set $peertube_limit_rate 5M; - set $limit_rate $peertube_limit_rate; - rewrite ^/static/streaming-playlists/(.*)$ /$1 break; ''; }; - locations."~ ^/static/webseed/" = { + locations."^~ /static/webseed/" = { tryFiles = "$uri @api"; root = cfg.settings.storage.videos; - priority = 1380; + priority = 1460; extraConfig = '' + set $peertube_limit_rate 800k; + + if ($request_uri ~ -fragmented.mp4$) { + set $peertube_limit_rate 5M; + } + if ($request_method = 'OPTIONS') { ${nginxCommonHeaders} add_header Access-Control-Max-Age 1728000; @@ -728,11 +815,9 @@ in { sendfile on; sendfile_max_chunk 1M; + limit_rate $peertube_limit_rate; limit_rate_after 5M; - set $peertube_limit_rate 800k; - set $limit_rate $peertube_limit_rate; - rewrite ^/static/webseed/(.*)$ /$1 break; ''; }; diff --git a/nixos/modules/services/web-servers/nginx/default.nix b/nixos/modules/services/web-servers/nginx/default.nix index 0b0e0de21df2b..8377e8a76d529 100644 --- a/nixos/modules/services/web-servers/nginx/default.nix +++ b/nixos/modules/services/web-servers/nginx/default.nix @@ -241,7 +241,7 @@ let configPath = if cfg.enableReload then "/etc/nginx/nginx.conf" - else configFile; + else finalConfigFile; execCommand = "${cfg.package}/bin/nginx -c '${configPath}'"; @@ -393,6 +393,38 @@ let ); mkCertOwnershipAssertion = import ../../../security/acme/mk-cert-ownership-assertion.nix; + + snakeOilCert = pkgs.runCommand "nginx-config-validate-cert" { nativeBuildInputs = [ pkgs.openssl.bin ]; } '' + mkdir $out + openssl genrsa -des3 -passout pass:xxxxx -out server.pass.key 2048 + openssl rsa -passin pass:xxxxx -in server.pass.key -out $out/server.key + openssl req -new -key $out/server.key -out server.csr \ + -subj "/C=UK/ST=Warwickshire/L=Leamington/O=OrgName/OU=IT Department/CN=example.com" + openssl x509 -req -days 1 -in server.csr -signkey $out/server.key -out $out/server.crt + ''; + validatedConfigFile = pkgs.runCommand "validated-nginx.conf" { nativeBuildInputs = [ cfg.package ]; } '' + # nginx absolutely wants to read the certificates even when told to only validate config, so let's provide fake certs + sed ${configFile} \ + -e "s|ssl_certificate .*;|ssl_certificate ${snakeOilCert}/server.crt;|g" \ + -e "s|ssl_trusted_certificate .*;|ssl_trusted_certificate ${snakeOilCert}/server.crt;|g" \ + -e "s|ssl_certificate_key .*;|ssl_certificate_key ${snakeOilCert}/server.key;|g" \ + > conf + + LD_PRELOAD=${pkgs.libredirect}/lib/libredirect.so \ + NIX_REDIRECTS="/etc/resolv.conf=/dev/null" \ + nginx -t -c $(readlink -f ./conf) > out 2>&1 || true + if ! grep -q "syntax is ok" out; then + echo nginx config validation failed. + echo config was ${configFile}. + echo 'in case of false positive, set `services.nginx.validateConfig` to false.' + echo nginx output: + cat out + exit 1 + fi + cp ${configFile} $out + ''; + + finalConfigFile = if cfg.validateConfig then validatedConfigFile else configFile; in { @@ -491,6 +523,17 @@ in ''; }; + validateConfig = mkOption { + # FIXME: re-enable if we can make of the configurations work. + #default = pkgs.stdenv.hostPlatform == pkgs.stdenv.buildPlatform; + default = false; + defaultText = literalExpression "pkgs.stdenv.hostPlatform == pkgs.stdenv.buildPlatform"; + type = types.bool; + description = lib.mdDoc '' + Validate the generated nginx config at build time. The check is not very robust and can be disabled in case of false positives. This is notably the case when cross-compiling or when using `include` with files outside of the store. + ''; + }; + additionalModules = mkOption { default = []; type = types.listOf (types.attrsOf types.anything); @@ -1029,7 +1072,7 @@ in }; environment.etc."nginx/nginx.conf" = mkIf cfg.enableReload { - source = configFile; + source = finalConfigFile; }; # This service waits for all certificates to be available @@ -1048,7 +1091,7 @@ in # certs are updated _after_ config has been reloaded. before = sslTargets; after = sslServices; - restartTriggers = optionals (cfg.enableReload) [ configFile ]; + restartTriggers = optionals (cfg.enableReload) [ finalConfigFile ]; # Block reloading if not all certs exist yet. # Happens when config changes add new vhosts/certs. unitConfig.ConditionPathExists = optionals (sslServices != []) (map (certName: certs.${certName}.directory + "/fullchain.pem") dependentCertNames); diff --git a/nixos/modules/services/x11/desktop-managers/cinnamon.nix b/nixos/modules/services/x11/desktop-managers/cinnamon.nix index aaad1de5f87bd..08c5625fc7ddd 100644 --- a/nixos/modules/services/x11/desktop-managers/cinnamon.nix +++ b/nixos/modules/services/x11/desktop-managers/cinnamon.nix @@ -105,7 +105,7 @@ in services.dbus.packages = with pkgs.cinnamon; [ cinnamon-common cinnamon-screensaver - nemo + nemo-with-extensions xapp ]; services.cinnamon.apps.enable = mkDefault true; @@ -154,7 +154,7 @@ in polkit_gnome # packages - nemo + nemo-with-extensions cinnamon-control-center cinnamon-settings-daemon libgnomekbd diff --git a/nixos/modules/services/x11/desktop-managers/plasma5.nix b/nixos/modules/services/x11/desktop-managers/plasma5.nix index 2ab24951ec62e..9fcb408c287d5 100644 --- a/nixos/modules/services/x11/desktop-managers/plasma5.nix +++ b/nixos/modules/services/x11/desktop-managers/plasma5.nix @@ -585,6 +585,8 @@ in hardware.bluetooth.enable = true; hardware.pulseaudio.enable = true; networking.networkmanager.enable = true; + # Required for autorotate + hardware.sensor.iio.enable = lib.mkDefault true; # Recommendations can be found here: # - https://invent.kde.org/plasma-mobile/plasma-phone-settings/-/tree/master/etc/xdg diff --git a/nixos/modules/system/activation/bootspec.cue b/nixos/modules/system/activation/bootspec.cue index 3fc9ca381df77..9f857a1b1cd80 100644 --- a/nixos/modules/system/activation/bootspec.cue +++ b/nixos/modules/system/activation/bootspec.cue @@ -1,4 +1,5 @@ #V1: { + system: string init: string initrd?: string initrdSecrets?: string diff --git a/nixos/modules/system/activation/bootspec.nix b/nixos/modules/system/activation/bootspec.nix index da76bf9084af8..61407ab67558b 100644 --- a/nixos/modules/system/activation/bootspec.nix +++ b/nixos/modules/system/activation/bootspec.nix @@ -19,13 +19,15 @@ let (builtins.toJSON { v1 = { + system = config.boot.kernelPackages.stdenv.hostPlatform.system; kernel = "${config.boot.kernelPackages.kernel}/${config.system.boot.loader.kernelFile}"; kernelParams = config.boot.kernelParams; - initrd = "${config.system.build.initialRamdisk}/${config.system.boot.loader.initrdFile}"; - initrdSecrets = "${config.system.build.initialRamdiskSecretAppender}/bin/append-initrd-secrets"; label = "NixOS ${config.system.nixos.codeName} ${config.system.nixos.label} (Linux ${config.boot.kernelPackages.kernel.modDirVersion})"; inherit (cfg) extensions; + } // lib.optionalAttrs config.boot.initrd.enable { + initrd = "${config.system.build.initialRamdisk}/${config.system.boot.loader.initrdFile}"; + initrdSecrets = "${config.system.build.initialRamdiskSecretAppender}/bin/append-initrd-secrets"; }; }); @@ -54,7 +56,7 @@ let specialisationInjector = let specialisationLoader = (lib.mapAttrsToList - (childName: childToplevel: lib.escapeShellArgs [ "--slurpfile" childName "${childToplevel}/bootspec/${filename}" ]) + (childName: childToplevel: lib.escapeShellArgs [ "--slurpfile" childName "${childToplevel}/${filename}" ]) children); in lib.escapeShellArgs [ @@ -66,7 +68,7 @@ let '' mkdir -p $out/bootspec - ${toplevelInjector} | ${specialisationInjector} > $out/bootspec/${filename} + ${toplevelInjector} | ${specialisationInjector} > $out/${filename} ''; validator = pkgs.writeCueValidator ./bootspec.cue { @@ -80,7 +82,7 @@ in enable = lib.mkEnableOption (lib.mdDoc "Enable generation of RFC-0125 bootspec in $system/bootspec, e.g. /run/current-system/bootspec"); extensions = lib.mkOption { - type = lib.types.attrs; + type = lib.types.attrsOf lib.types.attrs; # <namespace>: { ...namespace-specific fields } default = { }; description = lib.mdDoc '' User-defined data that extends the bootspec document. diff --git a/nixos/modules/system/activation/top-level.nix b/nixos/modules/system/activation/top-level.nix index 0bb3628ceed9a..00b11471e1c71 100644 --- a/nixos/modules/system/activation/top-level.nix +++ b/nixos/modules/system/activation/top-level.nix @@ -81,7 +81,7 @@ let ${optionalString (!config.boot.isContainer && config.boot.bootspec.enable) '' ${config.boot.bootspec.writer} - ${config.boot.bootspec.validator} "$out/bootspec/${config.boot.bootspec.filename}" + ${config.boot.bootspec.validator} "$out/${config.boot.bootspec.filename}" ''} ${config.system.extraSystemBuilderCmds} diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index 28c76fb169f11..95dcdfd7fbe16 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -205,8 +205,9 @@ let # Copy ld manually since it isn't detected correctly cp -pv ${pkgs.stdenv.cc.libc.out}/lib/ld*.so.? $out/lib - # Copy all of the needed libraries - find $out/bin $out/lib -type f | while read BIN; do + # Copy all of the needed libraries in a consistent order so + # duplicates are resolved the same way. + find $out/bin $out/lib -type f | sort | while read BIN; do echo "Copying libs for executable $BIN" for LIB in $(${findLibs}/bin/find-libs $BIN); do TGT="$out/lib/$(basename $LIB)" diff --git a/nixos/modules/tasks/filesystems/zfs.nix b/nixos/modules/tasks/filesystems/zfs.nix index 4b4f4cc801aba..0f14f2b501c22 100644 --- a/nixos/modules/tasks/filesystems/zfs.nix +++ b/nixos/modules/tasks/filesystems/zfs.nix @@ -503,6 +503,10 @@ in assertion = !cfgZfs.forceImportAll || cfgZfs.forceImportRoot; message = "If you enable boot.zfs.forceImportAll, you must also enable boot.zfs.forceImportRoot"; } + { + assertion = cfgZfs.allowHibernation -> !cfgZfs.forceImportRoot && !cfgZfs.forceImportAll; + message = "boot.zfs.allowHibernation while force importing is enabled will cause data corruption"; + } ]; boot = { diff --git a/nixos/modules/virtualisation/podman/default.nix b/nixos/modules/virtualisation/podman/default.nix index 118bf82cdd663..13bbb4471ea5d 100644 --- a/nixos/modules/virtualisation/podman/default.nix +++ b/nixos/modules/virtualisation/podman/default.nix @@ -109,6 +109,37 @@ in ''; }; + autoPrune = { + enable = mkOption { + type = types.bool; + default = false; + description = lib.mdDoc '' + Whether to periodically prune Podman resources. If enabled, a + systemd timer will run `podman system prune -f` + as specified by the `dates` option. + ''; + }; + + flags = mkOption { + type = types.listOf types.str; + default = []; + example = [ "--all" ]; + description = lib.mdDoc '' + Any additional flags passed to {command}`podman system prune`. + ''; + }; + + dates = mkOption { + default = "weekly"; + type = types.str; + description = lib.mdDoc '' + Specification (in the format described by + {manpage}`systemd.time(7)`) of the time at + which the prune will occur. + ''; + }; + }; + package = lib.mkOption { type = types.package; default = podmanPackage; @@ -151,6 +182,23 @@ in ExecStart = [ "" "${cfg.package}/bin/podman $LOGGING system service" ]; }; + systemd.services.podman-prune = { + description = "Prune podman resources"; + + restartIfChanged = false; + unitConfig.X-StopOnRemoval = false; + + serviceConfig.Type = "oneshot"; + + script = '' + ${cfg.package}/bin/podman system prune -f ${toString cfg.autoPrune.flags} + ''; + + startAt = lib.optional cfg.autoPrune.enable cfg.autoPrune.dates; + after = [ "podman.service" ]; + requires = [ "podman.service" ]; + }; + systemd.sockets.podman.wantedBy = [ "sockets.target" ]; systemd.sockets.podman.socketConfig.SocketGroup = "podman"; diff --git a/nixos/tests/acme.nix b/nixos/tests/acme.nix index 64bc99f6d325f..d62bf0c0fd92d 100644 --- a/nixos/tests/acme.nix +++ b/nixos/tests/acme.nix @@ -144,7 +144,11 @@ in { name = "acme"; - meta.maintainers = lib.teams.acme.members; + meta = { + maintainers = lib.teams.acme.members; + # Hard timeout in seconds. Average run time is about 7 minutes. + timeout = 1800; + }; nodes = { # The fake ACME server which will respond to client requests @@ -357,6 +361,30 @@ in { import time + TOTAL_RETRIES = 20 + + + class BackoffTracker(object): + delay = 1 + increment = 1 + + def handle_fail(self, retries, message) -> int: + assert retries < TOTAL_RETRIES, message + + print(f"Retrying in {self.delay}s, {retries + 1}/{TOTAL_RETRIES}") + time.sleep(self.delay) + + # Only increment after the first try + if retries == 0: + self.delay += self.increment + self.increment *= 2 + + return retries + 1 + + + backoff = BackoffTracker() + + def switch_to(node, name): # On first switch, this will create a symlink to the current system so that we can # quickly switch between derivations @@ -404,9 +432,7 @@ in { assert False - def check_connection(node, domain, retries=3): - assert retries >= 0, f"Failed to connect to https://{domain}" - + def check_connection(node, domain, retries=0): result = node.succeed( "openssl s_client -brief -verify 2 -CAfile /tmp/ca.crt" f" -servername {domain} -connect {domain}:443 < /dev/null 2>&1" @@ -414,13 +440,11 @@ in { for line in result.lower().split("\n"): if "verification" in line and "error" in line: - time.sleep(3) - return check_connection(node, domain, retries - 1) + retries = backoff.handle_fail(retries, f"Failed to connect to https://{domain}") + return check_connection(node, domain, retries) - def check_connection_key_bits(node, domain, bits, retries=3): - assert retries >= 0, f"Did not find expected number of bits ({bits}) in key" - + def check_connection_key_bits(node, domain, bits, retries=0): result = node.succeed( "openssl s_client -CAfile /tmp/ca.crt" f" -servername {domain} -connect {domain}:443 < /dev/null" @@ -429,13 +453,11 @@ in { print("Key type:", result) if bits not in result: - time.sleep(3) - return check_connection_key_bits(node, domain, bits, retries - 1) - + retries = backoff.handle_fail(retries, f"Did not find expected number of bits ({bits}) in key") + return check_connection_key_bits(node, domain, bits, retries) - def check_stapling(node, domain, retries=3): - assert retries >= 0, "OCSP Stapling check failed" + def check_stapling(node, domain, retries=0): # Pebble doesn't provide a full OCSP responder, so just check the URL result = node.succeed( "openssl s_client -CAfile /tmp/ca.crt" @@ -445,21 +467,19 @@ in { print("OCSP Responder URL:", result) if "${caDomain}:4002" not in result.lower(): - time.sleep(3) - return check_stapling(node, domain, retries - 1) - + retries = backoff.handle_fail(retries, "OCSP Stapling check failed") + return check_stapling(node, domain, retries) - def download_ca_certs(node, retries=5): - assert retries >= 0, "Failed to connect to pebble to download root CA certs" + def download_ca_certs(node, retries=0): exit_code, _ = node.execute("curl https://${caDomain}:15000/roots/0 > /tmp/ca.crt") exit_code_2, _ = node.execute( "curl https://${caDomain}:15000/intermediate-keys/0 >> /tmp/ca.crt" ) if exit_code + exit_code_2 > 0: - time.sleep(3) - return download_ca_certs(node, retries - 1) + retries = backoff.handle_fail(retries, "Failed to connect to pebble to download root CA certs") + return download_ca_certs(node, retries) start_all() diff --git a/nixos/tests/aesmd.nix b/nixos/tests/aesmd.nix index 5da661afd5480..848e1c5992014 100644 --- a/nixos/tests/aesmd.nix +++ b/nixos/tests/aesmd.nix @@ -1,7 +1,7 @@ { pkgs, lib, ... }: { name = "aesmd"; meta = { - maintainers = with lib.maintainers; [ veehaitch ]; + maintainers = with lib.maintainers; [ trundle veehaitch ]; }; nodes.machine = { lib, ... }: { @@ -25,38 +25,78 @@ # We don't have a real SGX machine in NixOS tests systemd.services.aesmd.unitConfig.AssertPathExists = lib.mkForce [ ]; + + specialisation = { + withQuoteProvider.configuration = { ... }: { + services.aesmd = { + quoteProviderLibrary = pkgs.sgx-azure-dcap-client; + environment = { + AZDCAP_DEBUG_LOG_LEVEL = "INFO"; + }; + }; + }; + }; }; - testScript = '' - with subtest("aesmd.service starts"): - machine.wait_for_unit("aesmd.service") - status, main_pid = machine.systemctl("show --property MainPID --value aesmd.service") - assert status == 0, "Could not get MainPID of aesmd.service" - main_pid = main_pid.strip() - - with subtest("aesmd.service runtime directory permissions"): - runtime_dir = "/run/aesmd"; - res = machine.succeed(f"stat -c '%a %U %G' {runtime_dir}").strip() - assert "750 aesmd sgx" == res, f"{runtime_dir} does not have the expected permissions: {res}" - - with subtest("aesm.socket available on host"): - socket_path = "/var/run/aesmd/aesm.socket" - machine.wait_until_succeeds(f"test -S {socket_path}") - machine.succeed(f"test 777 -eq $(stat -c '%a' {socket_path})") - for op in [ "-r", "-w", "-x" ]: - machine.succeed(f"sudo -u sgxtest test {op} {socket_path}") - machine.fail(f"sudo -u nosgxtest test {op} {socket_path}") - - with subtest("Copies white_list_cert_to_be_verify.bin"): - whitelist_path = "/var/opt/aesmd/data/white_list_cert_to_be_verify.bin" - whitelist_perms = machine.succeed( - f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/stat -c '%a' {whitelist_path}" - ).strip() - assert "644" == whitelist_perms, f"white_list_cert_to_be_verify.bin has permissions {whitelist_perms}" - - with subtest("Writes and binds aesm.conf in service namespace"): - aesmd_config = machine.succeed(f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/cat /etc/aesmd.conf") - - assert aesmd_config == "whitelist url = http://nixos.org\nproxy type = direct\ndefault quoting type = ecdsa_256\n", "aesmd.conf differs" - ''; + testScript = { nodes, ... }: + let + specialisations = "${nodes.machine.system.build.toplevel}/specialisation"; + in + '' + def get_aesmd_pid(): + status, main_pid = machine.systemctl("show --property MainPID --value aesmd.service") + assert status == 0, "Could not get MainPID of aesmd.service" + return main_pid.strip() + + with subtest("aesmd.service starts"): + machine.wait_for_unit("aesmd.service") + + main_pid = get_aesmd_pid() + + with subtest("aesmd.service runtime directory permissions"): + runtime_dir = "/run/aesmd"; + res = machine.succeed(f"stat -c '%a %U %G' {runtime_dir}").strip() + assert "750 aesmd sgx" == res, f"{runtime_dir} does not have the expected permissions: {res}" + + with subtest("aesm.socket available on host"): + socket_path = "/var/run/aesmd/aesm.socket" + machine.wait_until_succeeds(f"test -S {socket_path}") + machine.succeed(f"test 777 -eq $(stat -c '%a' {socket_path})") + for op in [ "-r", "-w", "-x" ]: + machine.succeed(f"sudo -u sgxtest test {op} {socket_path}") + machine.fail(f"sudo -u nosgxtest test {op} {socket_path}") + + with subtest("Copies white_list_cert_to_be_verify.bin"): + whitelist_path = "/var/opt/aesmd/data/white_list_cert_to_be_verify.bin" + whitelist_perms = machine.succeed( + f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/stat -c '%a' {whitelist_path}" + ).strip() + assert "644" == whitelist_perms, f"white_list_cert_to_be_verify.bin has permissions {whitelist_perms}" + + with subtest("Writes and binds aesm.conf in service namespace"): + aesmd_config = machine.succeed(f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/cat /etc/aesmd.conf") + + assert aesmd_config == "whitelist url = http://nixos.org\nproxy type = direct\ndefault quoting type = ecdsa_256\n", "aesmd.conf differs" + + with subtest("aesmd.service without quote provider library has correct LD_LIBRARY_PATH"): + status, environment = machine.systemctl("show --property Environment --value aesmd.service") + assert status == 0, "Could not get Environment of aesmd.service" + env_by_name = dict(entry.split("=", 1) for entry in environment.split()) + assert not env_by_name["LD_LIBRARY_PATH"], "LD_LIBRARY_PATH is not empty" + + with subtest("aesmd.service with quote provider library starts"): + machine.succeed('${specialisations}/withQuoteProvider/bin/switch-to-configuration test') + machine.wait_for_unit("aesmd.service") + + main_pid = get_aesmd_pid() + + with subtest("aesmd.service with quote provider library has correct LD_LIBRARY_PATH"): + ld_library_path = machine.succeed(f"xargs -0 -L1 -a /proc/{main_pid}/environ | grep LD_LIBRARY_PATH") + assert ld_library_path.startswith("LD_LIBRARY_PATH=${pkgs.sgx-azure-dcap-client}/lib:"), \ + "LD_LIBRARY_PATH is not set to the configured quote provider library" + + with subtest("aesmd.service with quote provider library has set AZDCAP_DEBUG_LOG_LEVEL"): + azdcp_debug_log_level = machine.succeed(f"xargs -0 -L1 -a /proc/{main_pid}/environ | grep AZDCAP_DEBUG_LOG_LEVEL") + assert azdcp_debug_log_level == "AZDCAP_DEBUG_LOG_LEVEL=INFO\n", "AZDCAP_DEBUG_LOG_LEVEL is not set to INFO" + ''; } diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index 1956d3c9e8c7c..4a07ec7dad306 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -69,7 +69,7 @@ in { _3proxy = runTest ./3proxy.nix; acme = runTest ./acme.nix; adguardhome = runTest ./adguardhome.nix; - aesmd = runTest ./aesmd.nix; + aesmd = runTestOn ["x86_64-linux"] ./aesmd.nix; agate = runTest ./web-servers/agate.nix; agda = handleTest ./agda.nix {}; airsonic = handleTest ./airsonic.nix {}; @@ -96,6 +96,7 @@ in { blockbook-frontend = handleTest ./blockbook-frontend.nix {}; blocky = handleTest ./blocky.nix {}; boot = handleTestOn ["x86_64-linux" "aarch64-linux"] ./boot.nix {}; + bootspec = handleTestOn ["x86_64-linux"] ./bootspec.nix {}; boot-stage1 = handleTest ./boot-stage1.nix {}; borgbackup = handleTest ./borgbackup.nix {}; botamusique = handleTest ./botamusique.nix {}; @@ -256,6 +257,7 @@ in { haste-server = handleTest ./haste-server.nix {}; haproxy = handleTest ./haproxy.nix {}; hardened = handleTest ./hardened.nix {}; + headscale = handleTest ./headscale.nix {}; healthchecks = handleTest ./web-apps/healthchecks.nix {}; hbase2 = handleTest ./hbase.nix { package=pkgs.hbase2; }; hbase_2_4 = handleTest ./hbase.nix { package=pkgs.hbase_2_4; }; diff --git a/nixos/tests/bootspec.nix b/nixos/tests/bootspec.nix index 13360bb1eaa2e..077dff918e0d2 100644 --- a/nixos/tests/bootspec.nix +++ b/nixos/tests/bootspec.nix @@ -43,7 +43,7 @@ in machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("test -e /run/current-system/bootspec/boot.json") + machine.succeed("test -e /run/current-system/boot.json") ''; }; @@ -65,7 +65,7 @@ in machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("test -e /run/current-system/bootspec/boot.json") + machine.succeed("test -e /run/current-system/boot.json") ''; }; @@ -86,7 +86,33 @@ in machine.start() machine.wait_for_unit("multi-user.target") + machine.succeed("test -e /run/current-system/boot.json") + ''; + }; + + # Check that initrd create corresponding entries in bootspec. + initrd = makeTest { + name = "bootspec-with-initrd"; + meta.maintainers = with pkgs.lib.maintainers; [ raitobezarius ]; + + nodes.machine = { + imports = [ standard ]; + environment.systemPackages = [ pkgs.jq ]; + # It's probably the case, but we want to make it explicit here. + boot.initrd.enable = true; + }; + + testScript = '' + import json + + machine.start() + machine.wait_for_unit("multi-user.target") + machine.succeed("test -e /run/current-system/bootspec/boot.json") + + bootspec = json.loads(machine.succeed("jq -r '.v1' /run/current-system/bootspec/boot.json")) + + assert all(key in bootspec for key in ('initrd', 'initrdSecrets')), "Bootspec should contain initrd or initrdSecrets field when initrd is enabled" ''; }; @@ -107,11 +133,11 @@ in machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("test -e /run/current-system/bootspec/boot.json") - machine.succeed("test -e /run/current-system/specialisation/something/bootspec/boot.json") + machine.succeed("test -e /run/current-system/boot.json") + machine.succeed("test -e /run/current-system/specialisation/something/boot.json") - sp_in_parent = json.loads(machine.succeed("jq -r '.v1.specialisation.something' /run/current-system/bootspec/boot.json")) - sp_in_fs = json.loads(machine.succeed("cat /run/current-system/specialisation/something/bootspec/boot.json")) + sp_in_parent = json.loads(machine.succeed("jq -r '.v1.specialisation.something' /run/current-system/boot.json")) + sp_in_fs = json.loads(machine.succeed("cat /run/current-system/specialisation/something/boot.json")) assert sp_in_parent == sp_in_fs['v1'], "Bootspecs of the same specialisation are different!" ''; @@ -135,7 +161,7 @@ in machine.wait_for_unit("multi-user.target") current_os_release = machine.succeed("cat /etc/os-release") - bootspec_os_release = machine.succeed("cat $(jq -r '.v1.extensions.osRelease' /run/current-system/bootspec/boot.json)") + bootspec_os_release = machine.succeed("cat $(jq -r '.v1.extensions.osRelease' /run/current-system/boot.json)") assert current_os_release == bootspec_os_release, "Filename referenced by extension has unexpected contents" ''; diff --git a/nixos/tests/headscale.nix b/nixos/tests/headscale.nix new file mode 100644 index 0000000000000..48658b5dade42 --- /dev/null +++ b/nixos/tests/headscale.nix @@ -0,0 +1,17 @@ +import ./make-test-python.nix ({ pkgs, lib, ... }: { + name = "headscale"; + meta.maintainers = with lib.maintainers; [ misterio77 ]; + + nodes.machine = { ... }: { + services.headscale.enable = true; + environment.systemPackages = [ pkgs.headscale ]; + }; + + testScript = '' + machine.wait_for_unit("headscale") + machine.wait_for_open_port(8080) + # Test basic funcionality + machine.succeed("headscale namespaces create test") + machine.succeed("headscale preauthkeys -n test create") + ''; +}) diff --git a/nixos/tests/keymap.nix b/nixos/tests/keymap.nix index 4306a9ae2cf94..0bde21093b0a2 100644 --- a/nixos/tests/keymap.nix +++ b/nixos/tests/keymap.nix @@ -64,7 +64,6 @@ let # wait for reader to be ready machine.wait_for_file("${readyFile}") - machine.sleep(1) # send all keys for key in inputs: @@ -78,9 +77,18 @@ let with open("${pkgs.writeText "tests.json" (builtins.toJSON tests)}") as json_file: tests = json.load(json_file) + # These environments used to run in the opposite order, causing the + # following error at openvt startup. + # + # openvt: Couldn't deallocate console 1 + # + # This error did not appear in successful runs. + # I don't know the exact cause, but I it seems that openvt and X are + # fighting over the virtual terminal. This does not appear to be a problem + # when the X test runs first. keymap_environments = { - "VT Keymap": "openvt -sw --", "Xorg Keymap": "DISPLAY=:0 xterm -title testterm -class testterm -fullscreen -e", + "VT Keymap": "openvt -sw --", } machine.wait_for_x() diff --git a/nixos/tests/nginx.nix b/nixos/tests/nginx.nix index d9d073822a145..73f1133bd6ca9 100644 --- a/nixos/tests/nginx.nix +++ b/nixos/tests/nginx.nix @@ -61,7 +61,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { specialisation.reloadWithErrorsSystem.configuration = { services.nginx.package = pkgs.nginxMainline; - services.nginx.virtualHosts."!@$$(#*%".locations."~@#*$*!)".proxyPass = ";;;"; + services.nginx.virtualHosts."hello".extraConfig = "access_log /does/not/exist.log;"; }; }; }; diff --git a/nixos/tests/os-prober.nix b/nixos/tests/os-prober.nix index 1c89cf8c1c677..8f3e2494047c3 100644 --- a/nixos/tests/os-prober.nix +++ b/nixos/tests/os-prober.nix @@ -1,7 +1,7 @@ import ./make-test-python.nix ({pkgs, lib, ...}: let # A filesystem image with a (presumably) bootable debian - debianImage = pkgs.vmTools.diskImageFuns.debian9i386 { + debianImage = pkgs.vmTools.diskImageFuns.debian11i386 { # os-prober cannot detect systems installed on disks without a partition table # so we create the disk ourselves createRootFS = with pkgs; '' diff --git a/nixos/tests/prometheus-exporters.nix b/nixos/tests/prometheus-exporters.nix index 7264bd5a498aa..5f50a3f87d5d2 100644 --- a/nixos/tests/prometheus-exporters.nix +++ b/nixos/tests/prometheus-exporters.nix @@ -1172,6 +1172,25 @@ let ''; }; + statsd = { + exporterConfig = { + enable = true; + }; + exporterTest = '' + wait_for_unit("prometheus-statsd-exporter.service") + wait_for_open_port(9102) + succeed("curl http://localhost:9102/metrics | grep 'statsd_exporter_build_info{'") + succeed( + "echo 'test.udp:1|c' > /dev/udp/localhost/9125", + "curl http://localhost:9102/metrics | grep 'test_udp 1'", + ) + succeed( + "echo 'test.tcp:1|c' > /dev/tcp/localhost/9125", + "curl http://localhost:9102/metrics | grep 'test_tcp 1'", + ) + ''; + }; + surfboard = { exporterConfig = { enable = true; diff --git a/nixos/tests/vscodium.nix b/nixos/tests/vscodium.nix index ee884cc4295dd..37bb649889b45 100644 --- a/nixos/tests/vscodium.nix +++ b/nixos/tests/vscodium.nix @@ -49,8 +49,8 @@ let start_all() machine.wait_for_unit('graphical.target') - machine.wait_until_succeeds('pgrep -x codium') + codium_running.wait() with codium_running: # Wait until vscodium is visible. "File" is in the menu bar. machine.wait_for_text('Get Started') diff --git a/nixos/tests/web-apps/peertube.nix b/nixos/tests/web-apps/peertube.nix index ecc45bff2e2ca..0e5f39c08a023 100644 --- a/nixos/tests/web-apps/peertube.nix +++ b/nixos/tests/web-apps/peertube.nix @@ -41,6 +41,9 @@ import ../make-test-python.nix ({pkgs, ...}: server = { pkgs, ... }: { environment = { etc = { + "peertube/secrets-peertube".text = '' + 063d9c60d519597acef26003d5ecc32729083965d09181ef3949200cbe5f09ee + ''; "peertube/password-posgressql-db".text = '' 0gUN0C1mgST6czvjZ8T9 ''; @@ -67,6 +70,10 @@ import ../make-test-python.nix ({pkgs, ...}: localDomain = "peertube.local"; enableWebHttps = false; + secrets = { + secretsFile = "/etc/peertube/secrets-peertube"; + }; + database = { host = "192.168.2.10"; name = "peertube_local"; diff --git a/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix b/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix index 8da04de579e6a..d7215f93973f6 100644 --- a/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix +++ b/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "bitwig-studio"; - version = "4.4.3"; + version = "4.4.6"; src = fetchurl { url = "https://downloads.bitwig.com/stable/${version}/${pname}-${version}.deb"; - sha256 = "sha256-NP9cM1xIHblMdUFKIviPKDi6su6Nc3xsX2pnPeP7hdQ="; + sha256 = "sha256-VcK74JrVH81sgNeh1FDvCO1jtgkVeLpx5IqlXuzH27A="; }; nativeBuildInputs = [ dpkg makeWrapper wrapGAppsHook ]; diff --git a/pkgs/applications/audio/faust/faustlive.nix b/pkgs/applications/audio/faust/faustlive.nix index 87f2920c200b5..b393041eeb12f 100644 --- a/pkgs/applications/audio/faust/faustlive.nix +++ b/pkgs/applications/audio/faust/faustlive.nix @@ -5,12 +5,12 @@ stdenv.mkDerivation rec { pname = "faustlive"; - version = "2.5.12"; + version = "2.5.13"; src = fetchFromGitHub { owner = "grame-cncm"; repo = "faustlive"; rev = version; - sha256 = "sha256-pq9zO4opCh9GEEtuQjrxKdNvOasDlcGGUsQD4je7Wyw="; + sha256 = "sha256-Tgb9UYj8mI4JsxA/PaTokm2NzQ14P8cOdKK8KCcnSIQ="; fetchSubmodules = true; }; diff --git a/pkgs/applications/audio/galaxy-buds-client/deps.nix b/pkgs/applications/audio/galaxy-buds-client/deps.nix index 104e36a63e71d..d45dd12b8b20a 100644 --- a/pkgs/applications/audio/galaxy-buds-client/deps.nix +++ b/pkgs/applications/audio/galaxy-buds-client/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Avalonia"; version = "0.10.14"; sha256 = "0nn3xgkf7v47dwpnsxjg0b25ifqa4mbq02ja5rvnlc3q2k6k0fxv"; }) (fetchNuGet { pname = "Avalonia.Angle.Windows.Natives"; version = "2.1.0.2020091801"; sha256 = "04jm83cz7vkhhr6n2c9hya2k8i2462xbf6np4bidk55as0jdq43a"; }) diff --git a/pkgs/applications/audio/lsp-plugins/default.nix b/pkgs/applications/audio/lsp-plugins/default.nix index f53f4c972af8f..be841577ad79b 100644 --- a/pkgs/applications/audio/lsp-plugins/default.nix +++ b/pkgs/applications/audio/lsp-plugins/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "lsp-plugins"; - version = "1.2.3"; + version = "1.2.4"; src = fetchurl { url = "https://github.com/sadko4u/${pname}/releases/download/${version}/${pname}-src-${version}.tar.gz"; - sha256 = "sha256-ej8t3xk29VLJMO1lvXuzUlD00al8TTkPLL8z62fmTys="; + sha256 = "sha256-GTrcUy10bN9Xj2I7uuGyP82c6NVpnQbXTI85H231yyo="; }; nativeBuildInputs = [ pkg-config php makeWrapper ]; diff --git a/pkgs/applications/audio/picard/default.nix b/pkgs/applications/audio/picard/default.nix index 272f475d2fc03..4e7323b128b37 100644 --- a/pkgs/applications/audio/picard/default.nix +++ b/pkgs/applications/audio/picard/default.nix @@ -19,13 +19,13 @@ let in pythonPackages.buildPythonApplication rec { pname = "picard"; - version = "2.8.4"; + version = "2.8.5"; src = fetchFromGitHub { owner = "metabrainz"; repo = pname; - rev = "release-${version}"; - sha256 = "sha256-ygZkj7hZNm7XyqDEI7l49d36ZgCTwFiAuYZjlF9d5+8="; + rev = "refs/tags/release-${version}"; + sha256 = "sha256-ukqlAXGaqX89U77cM9Ux0RYquT31Ho8ri1Ue7S3+MwQ="; }; nativeBuildInputs = [ gettext qt5.wrapQtAppsHook qt5.qtbase ] diff --git a/pkgs/applications/audio/plexamp/default.nix b/pkgs/applications/audio/plexamp/default.nix index ae9ab6229e2fc..df008d1cfb33c 100644 --- a/pkgs/applications/audio/plexamp/default.nix +++ b/pkgs/applications/audio/plexamp/default.nix @@ -2,12 +2,12 @@ let pname = "plexamp"; - version = "4.5.2"; + version = "4.6.1"; src = fetchurl { url = "https://plexamp.plex.tv/plexamp.plex.tv/desktop/Plexamp-${version}.AppImage"; name="${pname}-${version}.AppImage"; - sha512 = "/0CW5S5n4xh9FF/Sfxl3H0bNCpbUfz4ik4ptVTIwvEcXw2NoKS5dLxFSTn9lfVZAV+UfzSqcrWH5HknN+o5wQw=="; + sha512 = "9wkhSDn7kvj6pqCawTJDBO8HfYe8eEYtAR1Bi9/fxiOBXRYUUHEZzSGLF9QoTVYMuGGHeX35c+QvnA2VsdsWCw=="; }; appimageContents = appimageTools.extractType2 { @@ -33,7 +33,7 @@ in appimageTools.wrapType2 { meta = with lib; { description = "A beautiful Plex music player for audiophiles, curators, and hipsters"; homepage = "https://plexamp.com/"; - changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/47"; + changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/48"; license = licenses.unfree; maintainers = with maintainers; [ killercup synthetica ]; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/applications/audio/praat/default.nix b/pkgs/applications/audio/praat/default.nix index 9ef53b980b931..fb8bd527aa22e 100644 --- a/pkgs/applications/audio/praat/default.nix +++ b/pkgs/applications/audio/praat/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "praat"; - version = "6.3.02"; + version = "6.3.03"; src = fetchFromGitHub { owner = "praat"; repo = "praat"; rev = "v${version}"; - sha256 = "sha256-sn/GWCw1bxtFjUUKkrPZVOe5qRQ5ATyII52CPHmlB3g="; + sha256 = "sha256-Fb16sx+LVoXuiFASeiaYUMoNgZJXqKTBrUHFd2YXEJ0="; }; configurePhase = '' diff --git a/pkgs/applications/audio/squeezelite/default.nix b/pkgs/applications/audio/squeezelite/default.nix index dad4402e2d467..19b72d1c3788e 100644 --- a/pkgs/applications/audio/squeezelite/default.nix +++ b/pkgs/applications/audio/squeezelite/default.nix @@ -34,13 +34,13 @@ stdenv.mkDerivation { pname = binName; # versions are specified in `squeezelite.h` # see https://github.com/ralph-irving/squeezelite/issues/29 - version = "1.9.9.1414"; + version = "1.9.9.1419"; src = fetchFromGitHub { owner = "ralph-irving"; repo = "squeezelite"; - rev = "dbe69eb8aa88f644cfb46541d6cef72fa666570d"; - hash = "sha256-BN6eBHMMecucfHwzmho3xi1l2O3YnYcBUE321Rl6xrc="; + rev = "226efa300c4cf037e8486bad635e9deb3104636f"; + hash = "sha256-ZZWliw1prFbBZMFp0QmXg6MKuHPNuFh2lFxQ8bbuWAM="; }; buildInputs = [ flac libmad libvorbis mpg123 ] diff --git a/pkgs/applications/audio/tauon/default.nix b/pkgs/applications/audio/tauon/default.nix index 777f7c171c104..d6e56c98125f1 100644 --- a/pkgs/applications/audio/tauon/default.nix +++ b/pkgs/applications/audio/tauon/default.nix @@ -25,13 +25,13 @@ stdenv.mkDerivation rec { pname = "tauon"; - version = "7.4.6"; + version = "7.4.7"; src = fetchFromGitHub { owner = "Taiko2k"; repo = "TauonMusicBox"; rev = "v${version}"; - sha256 = "sha256-G3DDr2ON35ctjPkRMJDjnfDHMHMhR3tlTgJ65DXvzwk="; + sha256 = "sha256-WUHMXsbnNaDlV/5bCOPMadJKWoF5i2UlFf9fcX6GCZ0="; }; postUnpack = '' diff --git a/pkgs/applications/audio/zrythm/default.nix b/pkgs/applications/audio/zrythm/default.nix index 9500c63a7af31..7b92626d5b339 100644 --- a/pkgs/applications/audio/zrythm/default.nix +++ b/pkgs/applications/audio/zrythm/default.nix @@ -160,6 +160,7 @@ stdenv.mkDerivation rec { preFixup = '' gappsWrapperArgs+=( --prefix GSETTINGS_SCHEMA_DIR : "$out/share/gsettings-schemas/${pname}-${version}/glib-2.0/schemas/" + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS" ) ''; diff --git a/pkgs/applications/blockchains/btcpayserver/deps.nix b/pkgs/applications/blockchains/btcpayserver/deps.nix index c63830451416e..29bf9844b1786 100644 --- a/pkgs/applications/blockchains/btcpayserver/deps.nix +++ b/pkgs/applications/blockchains/btcpayserver/deps.nix @@ -1,1887 +1,398 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ - (fetchNuGet { - pname = "AngleSharp.Css"; - version = "0.14.2"; - sha256 = "1d34a8ab5dri4wlw07jvk7b1z0d0zizwihwpdfva3sxhb4279ahd"; - }) - (fetchNuGet { - pname = "AngleSharp"; - version = "0.14.0"; - sha256 = "1zgwhh1fp2mmaplvpgm86rpmslix3wqfxf0d3hxx1gxwfgr6wxm6"; - }) - (fetchNuGet { - pname = "AWSSDK.Core"; - version = "3.3.104.14"; - sha256 = "157694kb63z1szbsv861515fvjv7amrjrfmgbm3idpyw31afk650"; - }) - (fetchNuGet { - pname = "AWSSDK.S3"; - version = "3.3.110.10"; - sha256 = "1lf1hfbx792dpa1hxgn0a0jrrvldd16hgbxx229dk2qcz5qlnc38"; - }) - (fetchNuGet { - pname = "BIP78.Sender"; - version = "0.2.2"; - sha256 = "12pm2s35c0qzc06099q2z1pxwq94rq85n74yz8fs8gwvm2ksgp4p"; - }) - (fetchNuGet { - pname = "BTCPayServer.Hwi"; - version = "2.0.2"; - sha256 = "0lh3n1qncqs4kbrmx65xs271f0d9c7irrs9qnsa9q51cbbqbljh9"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.All"; - version = "1.4.12"; - sha256 = "1n7yv6q8fbk02d334a19zyicvlammjhfrg9rf18jyb3szj8g36k7"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Charge"; - version = "1.3.16"; - sha256 = "050wh5gw3hgql8191z0yv7sj06wg5da6kvkbcg9hq3ildj0fdj67"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.CLightning"; - version = "1.3.19"; - sha256 = "1jx9233apry0kb54df7k0p7vrsp3hp27f5d0j2802gry04sihrl7"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Common"; - version = "1.3.16"; - sha256 = "1g37736b4k0ncpyy2qycbk4l85fqvgwac3k98nbdj0dvhfghp1dn"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Common"; - version = "1.3.17"; - sha256 = "1bb8q57lnqnp3wijw41vvbwgz8rgg4g9pw8qhd4iiqi1w94q1bkz"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Eclair"; - version = "1.3.16"; - sha256 = "1q109kmzj99axk35l68z3gi29ww1xd62zaxj1f39myvlcv9ncb41"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.LNBank"; - version = "1.3.18"; - sha256 = "166v6mhmy47fgny55c4mzqb2x7anqyxnd0g409vfgyg5fq4gc15v"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.LND"; - version = "1.4.9"; - sha256 = "0ya365w3i3sjv7wafm6wmasf9mpfsh0fcbhawsv5br7m7lpppwhh"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.LNDhub"; - version = "1.0.12"; - sha256 = "1gb61a5mdmyigy7ps2c8n4iig6i32rdsif9kwn35yxx25zbnmbk2"; - }) - (fetchNuGet { - pname = "BTCPayServer.NETCore.Plugins.Mvc"; - version = "1.4.4"; - sha256 = "1kmmj5m7s41wc1akpqw1b1j7pp4c0vn6sqxb487980ibpj6hyisl"; - }) - (fetchNuGet { - pname = "BTCPayServer.NETCore.Plugins"; - version = "1.4.4"; - sha256 = "0rk0prmb0539ji5fd33cqy3yvw51i5i8m5hb43admr5z8960dd6l"; - }) - (fetchNuGet { - pname = "CsvHelper"; - version = "15.0.5"; - sha256 = "01y8bhsnxghn3flz0pr11vj6wjrpmia8rpdrsp7kjfc1zmhqlgma"; - }) - (fetchNuGet { - pname = "Dapper"; - version = "2.0.123"; - sha256 = "15hxrchfgiqnmgf8fqhrf4pb4c8l9igg5qnkw9yk3rkagcqfkk91"; - }) - (fetchNuGet { - pname = "DigitalRuby.ExchangeSharp"; - version = "1.0.2"; - sha256 = "1l6g61l18jqnc0h8rpsilfjjnyapm4ld8wcsr8bp0hp34p6wpidm"; - }) - (fetchNuGet { - pname = "Fido2.AspNet"; - version = "2.0.2"; - sha256 = "0x2k1wyd0p7cy4ir15m2bxiggckl98znc65b4vq75ckjyd6dm1a1"; - }) - (fetchNuGet { - pname = "Fido2.Models"; - version = "2.0.2"; - sha256 = "1vk4h9sv2dhdr0jvh2a7yk6v9rhxk9y8hxz4mkal8vd9psajz5cg"; - }) - (fetchNuGet { - pname = "Fido2"; - version = "2.0.2"; - sha256 = "1wqlk48apm7h637da7sav0r1a8yz2yy2gxhifpvydjqk1n3qybz4"; - }) - (fetchNuGet { - pname = "Google.Api.Gax.Rest"; - version = "2.5.0"; - sha256 = "1zkjl5zh6qwdz4qmnxnk5877pas638i2qi25znilhqqf3mrkp0rp"; - }) - (fetchNuGet { - pname = "Google.Api.Gax"; - version = "2.5.0"; - sha256 = "0q6pi53px998i3gdndla8v0zqdpyi9gnsy9mdcfpkrg09vfbdsl9"; - }) - (fetchNuGet { - pname = "Google.Apis.Auth"; - version = "1.35.1"; - sha256 = "1qdnd1nq9bfgyljmiww91pfi0iz1n29rz2dlizhxcijqya2ldha3"; - }) - (fetchNuGet { - pname = "Google.Apis.Auth"; - version = "1.38.0"; - sha256 = "0x3bdwiyqjxw5df99bfasmsv09kb47wzisag938631cijl0g277y"; - }) - (fetchNuGet { - pname = "Google.Apis.Core"; - version = "1.35.1"; - sha256 = "01dfw2kxknlc5pm7x1q88lv9j979509lkkgvlffjry5bawsxsja4"; - }) - (fetchNuGet { - pname = "Google.Apis.Core"; - version = "1.38.0"; - sha256 = "012gslhnx65vqfyzjnqx4bqk9kb8bwbx966q2f9fdgrfcn26gj9j"; - }) - (fetchNuGet { - pname = "Google.Apis.Storage.v1"; - version = "1.38.0.1470"; - sha256 = "0mfrz7fmpfbjvp4zfpjasmnfbgxgxrrjkf8xgp9p6h9g8qh2f2h2"; - }) - (fetchNuGet { - pname = "Google.Apis"; - version = "1.35.1"; - sha256 = "1022l8m7v9f3rkjc9l11mkzwsbmqx9sk5f4aym035vn9hdr16d49"; - }) - (fetchNuGet { - pname = "Google.Apis"; - version = "1.38.0"; - sha256 = "01j3d1lv106cqw9n0lwgclrxghy852fsibv6av4xr03ivrkm8g40"; - }) - (fetchNuGet { - pname = "Google.Cloud.Storage.V1"; - version = "2.3.0"; - sha256 = "01jhrd6m6md8m28chzg2dkdfd4yris79j1xi7r1ydm1cfjhmlj64"; - }) - (fetchNuGet { - pname = "HtmlSanitizer"; - version = "5.0.372"; - sha256 = "1gllp58vdbql2ybwf05i2178x7p4g8zyyk64317d1pyss5217g7r"; - }) - (fetchNuGet { - pname = "Humanizer.Core"; - version = "2.8.26"; - sha256 = "1v8xd12yms4qq1md4vh6faxicmqrvahqdd7sdkyzrphab9v44nsm"; - }) - (fetchNuGet { - pname = "libsodium"; - version = "1.0.18"; - sha256 = "15qzl5k31yaaapqlijr336lh4lzz1qqxlimgxy8fdyig8jdmgszn"; - }) - (fetchNuGet { - pname = "LNURL"; - version = "0.0.27"; - sha256 = "126rhls5yxxw4i419w59762cq3zmjccjd8x42qmb4nhqmbgybkzm"; - }) - (fetchNuGet { - pname = "MailKit"; - version = "3.3.0"; - sha256 = "18l0jkrc4d553kiw4vdjzzpafpvsgjs1n19kjbi8isnhzidmsl4j"; - }) - (fetchNuGet { - pname = "Microsoft.AspNet.SignalR.Client"; - version = "2.4.3"; - sha256 = "1whxcmxydcxjkw84sqk5idd406v3ia0xj2m4ia4b6wqbvkdqn7rf"; - }) - (fetchNuGet { - pname = "Microsoft.AspNet.WebApi.Client"; - version = "5.2.9"; - sha256 = "1sy1q36bm9fz3gi780w4jgysw3dwaz2f3a5gcn6jxw1gkmdasb08"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Connections.Abstractions"; - version = "3.1.10"; - sha256 = "05drcgbpzq700kvxnfxha10w3jgfp2jp0r2h4hpczjxj6cywbbi6"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Cryptography.Internal"; - version = "6.0.9"; - sha256 = "11wxfjbx111rl5s737wwbiz4b86fpbh98rlb87ycqb0b2y3yvmw3"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Cryptography.KeyDerivation"; - version = "6.0.9"; - sha256 = "0102pl980h0q9qfpad2nkhk3a6aygbf7i1gbgr2zm4r22fkbmb2n"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Hosting.Abstractions"; - version = "2.0.0"; - sha256 = "0x6vw7kiy9z7cdmgbqav0d9wq66032wg39l2c9cv6xvxxvdpbkz7"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Hosting.Server.Abstractions"; - version = "2.0.0"; - sha256 = "1k4dr6l32swi8zasfvzxixnjvgbrra7v6lgpri0929vb3r5lagjb"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Http.Abstractions"; - version = "2.0.0"; - sha256 = "1hgmnd5mj35g8cqq3mdhjf9cmi3wm5lqiyrj5mgfscnig6i686xr"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Http.Connections.Client"; - version = "3.1.10"; - sha256 = "1sni7hjpylamxaf98insalx3jj2k8skb02mhkmamxxj2488r2p9j"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Http.Connections.Common"; - version = "3.1.10"; - sha256 = "19mddj0dpy4j6fwh8b1q7aznnckjrkpvbqiyq4sq4z7lcgw6pbq6"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Http.Features"; - version = "2.0.0"; - sha256 = "1zk5ad3laa7ma83md8r80kijqzps6dcrvv0k1015nddfk1qd74s6"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Http.Features"; 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- sha256 = "sha256-sX9GeY+c/mcsAWApQ0E5LwoXZgWUC4w7YY8/PEzMhl8="; + sha256 = "sha256-HAA5YRShLzxVP9aIP1RdDH09cZqjiZhZOxxc2EVGvx8="; }; nativeBuildInputs = [ pkg-config qmake ]; diff --git a/pkgs/applications/blockchains/haven-cli/default.nix b/pkgs/applications/blockchains/haven-cli/default.nix index 2b314e7b52724..86e9132c2855b 100644 --- a/pkgs/applications/blockchains/haven-cli/default.nix +++ b/pkgs/applications/blockchains/haven-cli/default.nix @@ -29,6 +29,8 @@ stdenv.mkDerivation rec { rm -r external/{miniupnp,randomx,rapidjson,unbound} # export patched source for haven-gui cp -r . $source + # fix build on aarch64-darwin + substituteInPlace CMakeLists.txt --replace "-march=x86-64" "" ''; nativeBuildInputs = [ cmake pkg-config ]; @@ -59,7 +61,5 @@ stdenv.mkDerivation rec { license = licenses.bsd3; platforms = platforms.all; maintainers = with maintainers; [ kim0 ]; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; 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}) + (fetchNuGet { pname = "System.Security.Cryptography.X509Certificates"; version = "4.1.0"; sha256 = "0clg1bv55mfv5dq00m19cp634zx6inm31kf8ppbq1jgyjf2185dh"; }) + (fetchNuGet { pname = "System.Security.Cryptography.X509Certificates"; version = "4.3.0"; sha256 = "0valjcz5wksbvijylxijjxb1mp38mdhv03r533vnx1q3ikzdav9h"; }) + (fetchNuGet { pname = "System.Security.Principal"; version = "4.3.0"; sha256 = "12cm2zws06z4lfc4dn31iqv7072zyi4m910d4r6wm8yx85arsfxf"; }) + (fetchNuGet { pname = "System.Security.Principal.Windows"; version = "4.3.0"; sha256 = "00a0a7c40i3v4cb20s2cmh9csb5jv2l0frvnlzyfxh848xalpdwr"; }) + (fetchNuGet { pname = "System.Text.Encoding"; version = "4.0.11"; sha256 = "1dyqv0hijg265dwxg6l7aiv74102d6xjiwplh2ar1ly6xfaa4iiw"; }) + (fetchNuGet { pname = "System.Text.Encoding"; version = "4.3.0"; sha256 = "1f04lkir4iladpp51sdgmis9dj4y8v08cka0mbmsy0frc9a4gjqr"; }) + (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.0.11"; sha256 = "08nsfrpiwsg9x5ml4xyl3zyvjfdi4mvbqf93kjdh11j4fwkznizs"; }) + (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "11q1y8hh5hrp5a3kw25cb6l00v5l5dvirkz8jr3sq00h1xgcgrxy"; }) + (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.1.0"; sha256 = "1mw7vfkkyd04yn2fbhm38msk7dz2xwvib14ygjsb8dq2lcvr18y7"; }) + (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.3.0"; sha256 = "1bgq51k7fwld0njylfn7qc5fmwrk2137gdq7djqdsw347paa9c2l"; }) + (fetchNuGet { pname = "System.Threading"; version = "4.0.11"; sha256 = "19x946h926bzvbsgj28csn46gak2crv2skpwsx80hbgazmkgb1ls"; }) + (fetchNuGet { pname = "System.Threading"; version = "4.3.0"; sha256 = "0rw9wfamvhayp5zh3j7p1yfmx9b5khbf4q50d8k5rk993rskfd34"; }) + (fetchNuGet { pname = "System.Threading.Channels"; version = "4.7.1"; sha256 = "038fyrriypwzsj5fwgnkw79hm5ya0x63r724yizgahbxf512chr2"; }) + (fetchNuGet { pname = "System.Threading.Tasks"; version = "4.0.11"; sha256 = "0nr1r41rak82qfa5m0lhk9mp0k93bvfd7bbd9sdzwx9mb36g28p5"; }) + (fetchNuGet { pname = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) + (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.0.0"; sha256 = "1cb51z062mvc2i8blpzmpn9d9mm4y307xrwi65di8ri18cz5r1zr"; }) + (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.3.0"; sha256 = "1xxcx2xh8jin360yjwm4x4cf5y3a2bwpn2ygkfkwkicz7zk50s2z"; }) + (fetchNuGet { pname = "System.Threading.Thread"; version = "4.3.0"; sha256 = "0y2xiwdfcph7znm2ysxanrhbqqss6a3shi1z3c779pj2s523mjx4"; }) + (fetchNuGet { pname = "System.Threading.ThreadPool"; version = "4.3.0"; sha256 = "027s1f4sbx0y1xqw2irqn6x161lzj8qwvnh2gn78ciiczdv10vf1"; }) + (fetchNuGet { pname = "System.Threading.Timer"; version = "4.3.0"; sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.0.11"; sha256 = "0c6ky1jk5ada9m94wcadih98l6k1fvf6vi7vhn1msjixaha419l5"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) + (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) + (fetchNuGet { pname = "System.Xml.XmlDocument"; version = "4.0.1"; sha256 = "0ihsnkvyc76r4dcky7v3ansnbyqjzkbyyia0ir5zvqirzan0bnl1"; }) + (fetchNuGet { pname = "System.Xml.XmlDocument"; version = "4.3.0"; sha256 = "0bmz1l06dihx52jxjr22dyv5mxv6pj4852lx68grjm7bivhrbfwi"; }) + (fetchNuGet { pname = "System.Xml.XmlSerializer"; version = "4.0.11"; sha256 = "01nzc3gdslw90qfykq4qzr2mdnqxjl4sj0wp3fixiwdmlmvpib5z"; }) + (fetchNuGet { pname = "System.Xml.XmlSerializer"; version = "4.3.0"; sha256 = "07pa4sx196vxkgl3csvdmw94nydlsm9ir38xxcs84qjn8cycd912"; }) ] diff --git a/pkgs/applications/blockchains/wasabibackend/deps.nix b/pkgs/applications/blockchains/wasabibackend/deps.nix index 273f2a5eafd78..d7026875d062f 100644 --- a/pkgs/applications/blockchains/wasabibackend/deps.nix +++ b/pkgs/applications/blockchains/wasabibackend/deps.nix @@ -1,7 +1,7 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "3.1.26"; sha256 = "0rib2121wri6wj6h4f6w4yqw9qp2xsad3ind63fmp1sr649jifyh"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "3.1.26"; sha256 = "0z29rrhc87g0bi273lcqd608f7ngd16nv85v8549231yvf99n60x"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "3.1.26"; sha256 = "0pbm6hpibsvq5w8hyvvllz4qns287x3l8bc07krffv23yfbv8zwy"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.JsonPatch"; version = "3.1.1"; sha256 = "0c0aaz9rlh9chc53dnv5jryp0x0415hipaizrmih3kzwd3fmqpml"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.Mvc.NewtonsoftJson"; version = "3.1.1"; sha256 = "1c2lrlp64kkacnjgdyygr6fqdawk10l8j4qgppii6rq61yjwhcig"; }) (fetchNuGet { pname = "Microsoft.Build"; version = "15.3.409"; sha256 = "0vzq6csp2yys9s96c7i37bjml439rdi47g8f5rzqdr7xf5a1jk81"; }) @@ -18,11 +18,6 @@ (fetchNuGet { pname = "Microsoft.Extensions.Logging.Abstractions"; version = "1.0.0"; sha256 = "1sh9bidmhy32gkz6fkli79mxv06546ybrzppfw5v2aq0bda1ghka"; }) (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "2.0.0"; sha256 = "1xppr5jbny04slyjgngxjdm0maxdh47vq481ps944d7jrfs0p3mb"; }) (fetchNuGet { pname = "Microsoft.NETCore.App"; version = "2.0.5"; sha256 = "0qb7k624w7l0zhapdp519ymqg84a67r8zyd8cpj42hywsgb0dqv6"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "3.1.26"; sha256 = "1vk4dr2z72nmjg2skqvy2m2h5brqp21v51pnd7ldpm7asgr5ck8n"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "3.1.26"; sha256 = "0l5yfnpbd36n38rjlmhsnq4bniq1fcssv4qh8kb9h3qigz40qxj9"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "3.1.26"; sha256 = "1h9b8fwgwbycvn1ngxnpdz3s1zh59wi2iy8n4y2nfkmz2rbldrrm"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "3.1.26"; sha256 = "0y06qz4pgflwia222mljg19nlfmhcg0qs1a8wm3zwj602wzy3nll"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "3.1.26"; sha256 = "1half7rywhxb1x19gzddvjqbll4whx9wmwdlk57iy68djas95lmy"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetAppHost"; version = "2.0.5"; sha256 = "00bsxdg9c8msjxyffvfi8siqk8v2m7ca8fqy1npv7b2pzg3byjws"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHostPolicy"; version = "2.0.5"; sha256 = "0v5csskiwpk8kz8wclqad8kcjmxr7ik4w99wl05740qvaag3qysk"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHostResolver"; version = "2.0.5"; sha256 = "1sz2fdp8fdwz21x3lr2m1zhhrbix6iz699fjkwiryqdjl4ygd3hw"; }) @@ -66,9 +61,6 @@ (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.0.11"; sha256 = "05ndbai4vpqrry0ghbfgqc8xblmplwjgndxmdn1zklqimczwjg2d"; }) (fetchNuGet { pname = "runtime.unix.System.Private.Uri"; version = "4.0.1"; sha256 = "0ic5dgc45jkhcr1g9xmmzjm7ffiw4cymm0fprczlx4fnww4783nm"; }) (fetchNuGet { pname = "runtime.unix.System.Runtime.Extensions"; version = "4.1.0"; sha256 = "0x1cwd7cvifzmn5x1wafvj75zdxlk3mxy860igh3x1wx0s8167y4"; }) - (fetchNuGet { pname = "runtime.win.System.Diagnostics.Debug"; version = "4.0.11"; sha256 = "1ylkj4v7aq00svij7aq82d86afpwqgrqf2kpikabxl26p19ry9wm"; }) - (fetchNuGet { pname = "runtime.win.System.Runtime.Extensions"; version = "4.1.0"; sha256 = "1zmx2msa04ka8mgh8viahi4pqpp86vdhzij2rg1jg131bwlv59yw"; }) - (fetchNuGet { pname = "runtime.win7.System.Private.Uri"; version = "4.0.1"; sha256 = "1ibrwabavdpqapnplm5kh6nz9vgcwv0wn61w1p60v262kif6sglp"; }) (fetchNuGet { pname = "Swashbuckle.AspNetCore"; version = "5.0.0"; sha256 = "0rn2awmzrsrppk97xbbwk4kq1mys9bygb5xhl6mphbk0hchrvh09"; }) (fetchNuGet { pname = "Swashbuckle.AspNetCore.Swagger"; version = "5.0.0"; sha256 = "1341nv8nmh6avs3y7w2szzir5qd0bndxwrkdmvvj3hcxj1126w2f"; }) (fetchNuGet { pname = "Swashbuckle.AspNetCore.SwaggerGen"; version = "5.0.0"; sha256 = "00swg2avqnb38q2bsxljd34n8rpknp74h9vbn0fdnfds3a32cqr4"; }) diff --git a/pkgs/applications/editors/jove/default.nix b/pkgs/applications/editors/jove/default.nix index ca494a37fa85e..fc8026fb5caf0 100644 --- a/pkgs/applications/editors/jove/default.nix +++ b/pkgs/applications/editors/jove/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "jove"; - version = "4.17.4.8"; + version = "4.17.4.9"; src = fetchFromGitHub { owner = "jonmacs"; repo = "jove"; rev = finalAttrs.version; - sha256 = "sha256-/n/TgVqyG/WeK+/DZqFZCdkQR4SD5+YmljLlzAehMvw="; + sha256 = "sha256-Lo5S3t4vewkpoihVdxa3yRrEzNWeNLHCZHXiLCxOH5o="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/editors/netbeans/default.nix b/pkgs/applications/editors/netbeans/default.nix index a004598fe8466..06faac39cbc39 100644 --- a/pkgs/applications/editors/netbeans/default.nix +++ b/pkgs/applications/editors/netbeans/default.nix @@ -64,6 +64,10 @@ stdenv.mkDerivation { description = "An integrated development environment for Java, C, C++ and PHP"; homepage = "https://netbeans.apache.org/"; license = lib.licenses.asl20; + sourceProvenance = with lib.sourceTypes; [ + binaryBytecode + binaryNativeCode + ]; maintainers = with lib.maintainers; [ sander rszibele asbachb ]; platforms = lib.platforms.unix; }; diff --git a/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix b/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix index 66234c2c198e1..20641908115c2 100644 --- a/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix +++ b/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix @@ -1,9 +1,6 @@ -{ lib, stdenv +{ lib +, stdenv , rtpPath -, vim -, vimCommandCheckHook -, vimGenDocHook -, neovimRequireCheckHook , toVimPlugin }: @@ -14,39 +11,46 @@ rec { overrideAttrs = f: addRtp (drv.overrideAttrs f); }; - buildVimPlugin = attrs@{ - name ? "${attrs.pname}-${attrs.version}", - namePrefix ? "vimplugin-", - src, - unpackPhase ? "", - configurePhase ? "", - buildPhase ? "", - preInstall ? "", - postInstall ? "", - path ? ".", - addonInfo ? null, - ... - }: - let drv = stdenv.mkDerivation (attrs // { - name = namePrefix + name; - - inherit unpackPhase configurePhase buildPhase addonInfo preInstall postInstall; - - installPhase = '' - runHook preInstall - - target=$out/${rtpPath}/${path} - mkdir -p $out/${rtpPath} - cp -r . $target - - runHook postInstall - ''; - }); - in addRtp (toVimPlugin drv); + buildVimPlugin = + { name ? "${attrs.pname}-${attrs.version}" + , namePrefix ? "vimplugin-" + , src + , unpackPhase ? "" + , configurePhase ? "" + , buildPhase ? "" + , preInstall ? "" + , postInstall ? "" + , path ? "." + , addonInfo ? null + , meta ? { } + , ... + }@attrs: + let + drv = stdenv.mkDerivation (attrs // { + name = namePrefix + name; + + inherit unpackPhase configurePhase buildPhase addonInfo preInstall postInstall; + + installPhase = '' + runHook preInstall + + target=$out/${rtpPath}/${path} + mkdir -p $out/${rtpPath} + cp -r . $target + + runHook postInstall + ''; + + meta = { + platforms = lib.platforms.all; + } // meta; + }); + in + addRtp (toVimPlugin drv); buildVimPluginFrom2Nix = attrs: buildVimPlugin ({ # vim plugins may override this buildPhase = ":"; - configurePhase =":"; + configurePhase = ":"; } // attrs); } diff --git a/pkgs/applications/editors/vim/plugins/generated.nix b/pkgs/applications/editors/vim/plugins/generated.nix index d658323dafd56..01e3a868ceb2b 100644 --- a/pkgs/applications/editors/vim/plugins/generated.nix +++ b/pkgs/applications/editors/vim/plugins/generated.nix @@ -27,6 +27,18 @@ final: prev: meta.homepage = "https://github.com/vim-scripts/BufOnly.vim/"; }; + ChatGPT-nvim = buildVimPluginFrom2Nix { + pname = "ChatGPT.nvim"; + version = "2022-12-23"; + src = fetchFromGitHub { + owner = "jackMort"; + repo = "ChatGPT.nvim"; + rev = "c1198dd914bfe7af1754c67beff441b0475e51ee"; + sha256 = "17nil4vnlvq6qmsgmbrn0ci48p2pfyv1wf2p31da2ld3hjp52wbm"; + }; + meta.homepage = "https://github.com/jackMort/ChatGPT.nvim/"; + }; + CheckAttach = buildVimPluginFrom2Nix { pname = "CheckAttach"; version = "2019-05-08"; @@ -161,12 +173,12 @@ final: prev: LeaderF = buildVimPluginFrom2Nix { pname = "LeaderF"; - version = "2022-12-09"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "Yggdroot"; repo = "LeaderF"; - rev = "3ce1a63f85128beea8d74a52baacea11c105bf0f"; - sha256 = "10mzrhhnh9jsxagpzx5pw3j4xnv573769wg9zk004y2h76pwyg2j"; + rev = "43433aa8dad1601acf923d3c25fa3325799508aa"; + sha256 = "111nhw85v6hkyjzfs8jx566s44i89mihvlcnwdgwc08pnmnm7fci"; }; meta.homepage = "https://github.com/Yggdroot/LeaderF/"; }; @@ -185,12 +197,12 @@ final: prev: Navigator-nvim = buildVimPluginFrom2Nix { pname = "Navigator.nvim"; - version = "2022-12-13"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "numToStr"; repo = "Navigator.nvim"; - rev = "a440fea38f8055f0704537a6eea2fae3c04970b6"; - sha256 = "018mg6iw7ynnnd9ikcj6mqxwyz5l5byq3g7b6fvr8a10pa017194"; + rev = "a2e7d6ebd26e647469135d4096dfa89da4f070e5"; + sha256 = "0jli6pba08n20n97h0wh6h36pkca9bwq93h9dipmb0q4a2zqb37m"; }; meta.homepage = "https://github.com/numToStr/Navigator.nvim/"; }; @@ -281,12 +293,12 @@ final: prev: SchemaStore-nvim = buildVimPluginFrom2Nix { pname = "SchemaStore.nvim"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "b0o"; repo = "SchemaStore.nvim"; - rev = "1e175de11fd7a8e0092d893753b8b797788efa7a"; - sha256 = "0spbn1c28ranm8zpyvsqyjkmhjg28y5vvghvp1m0qscvi52zfmdw"; + rev = "9f294b2f5890210293e59a1702c3ee504ec7704e"; + sha256 = "1yj9bh04c6pgzz2kisjd2zx1xhg33626snp7307ma65cpr7pbqbx"; }; meta.homepage = "https://github.com/b0o/SchemaStore.nvim/"; }; @@ -521,6 +533,18 @@ final: prev: meta.homepage = "https://github.com/derekelkins/agda-vim/"; }; + ai-vim = buildVimPluginFrom2Nix { + pname = "ai.vim"; + version = "2022-12-16"; + src = fetchFromGitHub { + owner = "aduros"; + repo = "ai.vim"; + rev = "b5098a1d70be968444b6f3d9441443af3e357035"; + sha256 = "1hx4zilzc0vf62hiwk3qgyn12mjs8fw0wq1fw9g1v3k9v512z4fb"; + }; + meta.homepage = "https://github.com/aduros/ai.vim/"; + }; + alchemist-vim = buildVimPluginFrom2Nix { pname = "alchemist.vim"; version = "2020-04-27"; @@ -535,12 +559,12 @@ final: prev: ale = buildVimPluginFrom2Nix { pname = "ale"; - version = "2022-12-10"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "dense-analysis"; repo = "ale"; - rev = "8bcbb2995822c4062d00cb41df713fd76092f04f"; - sha256 = "0n7adhyc30778zd0l1pfml0xna8zfxcahzr9fxryqkx0ragp94jn"; + rev = "1e398202b9a63fcd91808a3205d3422b79435fa0"; + sha256 = "013wm78jv848ni8c5nar6qnnzgw8vm5lwxdb3jv1dymnjwl22b4j"; }; meta.homepage = "https://github.com/dense-analysis/ale/"; }; @@ -803,20 +827,20 @@ final: prev: src = fetchFromGitHub { owner = "romgrk"; repo = "barbar.nvim"; - rev = "637a9d4b5f0ae203e4ab7e9d45297f85d3cce207"; - sha256 = "0d201rb76qgsaq6y04gzcybvifsqbdybgx2b6rddsf8waa11633n"; + rev = "de30eb4b095c7f1ae51fbcc0d01e8671e80f6b0b"; + sha256 = "0f2p62xxmisc2dxc4anfqxl700vjs0lp2vghc4xfpv07zw6dcb5j"; }; meta.homepage = "https://github.com/romgrk/barbar.nvim/"; }; barbecue-nvim = buildVimPluginFrom2Nix { pname = "barbecue.nvim"; - version = "2022-12-07"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "utilyre"; repo = "barbecue.nvim"; - rev = "50b3c69a39f70d7b99661d82f37bb9b04eca25bd"; - sha256 = "0p69khfwlgcqrq8d6d2xrr4913vpc7hywz498h3ig5mqaik6bsy5"; + rev = "894bd7a132832bba4d09155567f9e8114d9cc8d4"; + sha256 = "1xabr17md3hwjs92rcaxqhm60hl3pfz0kzj3i966z6vqs9dfnzmb"; }; meta.homepage = "https://github.com/utilyre/barbecue.nvim/"; }; @@ -955,12 +979,12 @@ final: prev: bufferline-nvim = buildVimPluginFrom2Nix { pname = "bufferline.nvim"; - version = "2022-11-16"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "akinsho"; repo = "bufferline.nvim"; - rev = "4ecfa81e470a589e74adcde3d5bb1727dd407363"; - sha256 = "0l2d28bh85cv722c25qda74nkwmd19nifyyqmsn5ac2s027pasd8"; + rev = "877e778afd2dbbe52b9847d9ea473a29a0c3646d"; + sha256 = "1qvlp7p39fy6pmbixlzd7h588bcmym37frciy7y5vansim7q44bn"; }; meta.homepage = "https://github.com/akinsho/bufferline.nvim/"; }; @@ -1015,12 +1039,12 @@ final: prev: ccc-nvim = buildVimPluginFrom2Nix { pname = "ccc.nvim"; - version = "2022-11-23"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "uga-rosa"; repo = "ccc.nvim"; - rev = "db80a70d5fc66e0700bc7c05f19da45221851bd0"; - sha256 = "06cdbbagfabgarykcj75hs7b1v14p4ssp8p75n6gxmfjhapdsmir"; + rev = "dd1d7276485ff9a74c5f1870e887289e5821e434"; + sha256 = "1sv77fq91qjc1dhdywi816hjya5chjp8030029sh7jqmaxpbyizw"; }; meta.homepage = "https://github.com/uga-rosa/ccc.nvim/"; }; @@ -1735,12 +1759,12 @@ final: prev: coc-nvim = buildVimPluginFrom2Nix { pname = "coc.nvim"; - version = "2022-12-14"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "neoclide"; repo = "coc.nvim"; - rev = "66d910665d7fef9e441293bab0fa08f77d6c004e"; - sha256 = "1kr8s5dxfq80hf8gdx3q3cji25ci4jj81b8mp3zyr7041xmd8pgq"; + rev = "28feeffa7daa1cfe0373c00b1d58f9d293691a1e"; + sha256 = "0pqcglvvkkcnnqrlzzbws4lqdqv5vj6lql4z081ghp3a0c9ffd4b"; }; meta.homepage = "https://github.com/neoclide/coc.nvim/"; }; @@ -1807,12 +1831,12 @@ final: prev: command-t = buildVimPluginFrom2Nix { pname = "command-t"; - version = "2022-12-14"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "wincent"; repo = "command-t"; - rev = "ba2a995c72287ac9469fbf79235917d4b8f343ce"; - sha256 = "0h085vl01v5g1gz4fbgcijpf9hr956k47d0k2dgx765x9vxwxi7b"; + rev = "23d2860931dcbcbdfb3543bed002e35d7b3b898b"; + sha256 = "0wqpyzggaxqplwi9w7ivndjkfisjv8f3lqw5dw7dps5zdk042svn"; }; meta.homepage = "https://github.com/wincent/command-t/"; }; @@ -2011,36 +2035,36 @@ final: prev: copilot-vim = buildVimPluginFrom2Nix { pname = "copilot.vim"; - version = "2022-12-06"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "github"; repo = "copilot.vim"; - rev = "2f4f9259a5c0f927b31c4256cd3e4d7c6df87662"; - sha256 = "0sl6n0hi3y7hw7yyd4p93dpqxq8vvgl4h89640579k28hms22i45"; + rev = "324ec9eb69e20971b58340d0096c3caac7bc2089"; + sha256 = "1zmzca9brdm9css41m9yc6vqc9033c86whcs9ykz4v4f148kyxvg"; }; meta.homepage = "https://github.com/github/copilot.vim/"; }; coq-artifacts = buildVimPluginFrom2Nix { pname = "coq.artifacts"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq.artifacts"; - rev = "b346640db78186f26c6314e2d079e70051abb288"; - sha256 = "001jch8haq6jl0i1y7hkr4vv7aibrjyrf83s5vjvqjcp5mr1f5b9"; + rev = "42a63a90f93a457f5f1c40320bdc017c626ec653"; + sha256 = "1vd6plbhyc1cfm73gmi71m04h1h8v7jd72y096g8ngw7zrxv7z87"; }; meta.homepage = "https://github.com/ms-jpq/coq.artifacts/"; }; coq-thirdparty = buildVimPluginFrom2Nix { pname = "coq.thirdparty"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq.thirdparty"; - rev = "e84c7319f90e4ccc557a635ba440eac5727445fb"; - sha256 = "0adhmc5mw7i1c8liw2fzygfmrk54lg2bfg1kcp1drlrm1hqkicwq"; + rev = "d717f8d0383be382ffd4b461abcff0af2336ffa6"; + sha256 = "0a9kydl976zcs07g8ll72fyir95k69xy5rq2wc3pc6k60mifarya"; }; meta.homepage = "https://github.com/ms-jpq/coq.thirdparty/"; }; @@ -2059,12 +2083,12 @@ final: prev: coq_nvim = buildVimPluginFrom2Nix { pname = "coq_nvim"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq_nvim"; - rev = "d363d976a9583f1ad0fa85d96349423483b69901"; - sha256 = "0mdl90imaqwhx67z043c5f79c71gdigf4qwc80gkm3104g30sv0s"; + rev = "0207a61d2bdb35eea0bf316da0f1287aadcc1f86"; + sha256 = "03j6yg0gm9k9hidvcywp5xq1m0gmg0blfzqm41kc74myjsscy5ym"; }; meta.homepage = "https://github.com/ms-jpq/coq_nvim/"; }; @@ -2095,12 +2119,12 @@ final: prev: crates-nvim = buildVimPluginFrom2Nix { pname = "crates.nvim"; - version = "2022-12-08"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "saecki"; repo = "crates.nvim"; - rev = "22fcb7a623bab743fcae1532b272ae52a6e24fda"; - sha256 = "0cspbrbx3zz6zp59bbj6qx1f17xcbvcbx1920z8l1c1cisdh4m4a"; + rev = "a70328ae638e20548bcfc64eb9561101104b3008"; + sha256 = "0i5bpg4sxm61200mwi3flji5cciv8izbcp38i4bkjm82ad09byzf"; }; meta.homepage = "https://github.com/saecki/crates.nvim/"; }; @@ -2203,12 +2227,12 @@ final: prev: dashboard-nvim = buildVimPluginFrom2Nix { pname = "dashboard-nvim"; - version = "2022-11-22"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "glepnir"; repo = "dashboard-nvim"; - rev = "5ccce7b50c8ce81c01956864ff51b455ee6933c4"; - sha256 = "09zmv2s5fnpvjlkcy5hrjkqq58s5c10d321gx6ip7qhpaps3vgv0"; + rev = "115b9f9cec10e31aff39c077bf5a4881bc840916"; + sha256 = "0xvwsk6sl2yikppmx962hvgziib3wyybp1z528zvrl7a4xrfwx9n"; }; meta.homepage = "https://github.com/glepnir/dashboard-nvim/"; }; @@ -2577,24 +2601,24 @@ final: prev: dial-nvim = buildVimPluginFrom2Nix { pname = "dial.nvim"; - version = "2022-12-08"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "monaqa"; repo = "dial.nvim"; - rev = "f6d274bd8e32be65b99f1052a8b5353ef5e702d7"; - sha256 = "0lnzs4qqbnbrkxfp40hwrpvh0579qw0bnayjz0qzqhi115fss136"; + rev = "61afb28f61ba090a67a88186f7bc8a94212e509a"; + sha256 = "0zzmgyl0j9ajmmyiwbpyp5js0ssz8gnlll6kbyk421jybjy17l6n"; }; meta.homepage = "https://github.com/monaqa/dial.nvim/"; }; diffview-nvim = buildVimPluginFrom2Nix { pname = "diffview.nvim"; - version = "2022-12-14"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "sindrets"; repo = "diffview.nvim"; - rev = "c6a3d3f1de85bc67b2da62eaf266d4f8cf714fab"; - sha256 = "0jdsyn9idkjf5lb57nl4p8dir8cisxhp34v9jq5iyn8z0ba8j59m"; + rev = "3812e296d3977a24db62f7c18025755b40968d3a"; + sha256 = "0xqpbsv2pahdc4zxqwkv9r6n5vm3g0c60q3klg96k7cn737k8cyn"; }; meta.homepage = "https://github.com/sindrets/diffview.nvim/"; }; @@ -2625,12 +2649,12 @@ final: prev: dracula-nvim = buildVimPluginFrom2Nix { pname = "dracula.nvim"; - version = "2022-12-12"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "Mofiqul"; repo = "dracula.nvim"; - rev = "1ee6072c6638de86abc9aef43ac315fd7eede6aa"; - sha256 = "0xq0m5qy3c48bvc6rrhr9w3rzy51a0gl2wi4y64mxp96aapz7j6h"; + rev = "9195c478cf05c3369131a7a9c606cbbc5247b0c6"; + sha256 = "12288w7071d9s4sfv0bd7bzahrmwds9yabqzfpapassr8958w84j"; }; meta.homepage = "https://github.com/Mofiqul/dracula.nvim/"; }; @@ -2661,12 +2685,12 @@ final: prev: edge = buildVimPluginFrom2Nix { pname = "edge"; - version = "2022-12-13"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "sainnhe"; repo = "edge"; - rev = "a60ef7702c77288e79cc4c2bcd6fddf96e100db1"; - sha256 = "17z2y8dwzn7ildd6gjbrfink4jy48h1di7b40d1csbci4ayfa2fc"; + rev = "255b8a1e6c3c2a24afb625274dd61a08edcf2db6"; + sha256 = "0lp6fiyv4b289qn0835sznva59515vwih4xp0mbfnp6n5fv8c811"; }; meta.homepage = "https://github.com/sainnhe/edge/"; }; @@ -2747,12 +2771,12 @@ final: prev: everforest = buildVimPluginFrom2Nix { pname = "everforest"; - version = "2022-12-13"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "sainnhe"; repo = "everforest"; - rev = "8c1f892e31d22a0d99876793788d323eed68f3cd"; - sha256 = "0npczribj3lv0irpb0ka001r3sfqx93d981hm8aqi4wd1nsaqbvh"; + rev = "34c9fbc6f9777c4b1e5a65e590f0fa614c1e747c"; + sha256 = "1vla0d4gxw5664hbzw3ykp44vkdwxxpcq42gg43v1786jslx24zx"; }; meta.homepage = "https://github.com/sainnhe/everforest/"; }; @@ -2807,12 +2831,12 @@ final: prev: feline-nvim = buildVimPluginFrom2Nix { pname = "feline.nvim"; - version = "2022-12-04"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "feline-nvim"; repo = "feline.nvim"; - rev = "573e6d1e213de976256c84e1cb2f55665549b828"; - sha256 = "0m54mdxkpx4ds7clydiclq8m41vcf1sg6689r3kyp3q537kmc9k1"; + rev = "d48b6f92c6ccdd6654c956f437be49ea160b5b0c"; + sha256 = "1d3sj499mj63djy2bjp7yx5qyrzsq8gphzy3wl9fnfnni1bzwg4g"; }; meta.homepage = "https://github.com/feline-nvim/feline.nvim/"; }; @@ -2877,6 +2901,18 @@ final: prev: meta.homepage = "https://github.com/bogado/file-line/"; }; + firenvim = buildVimPluginFrom2Nix { + pname = "firenvim"; + version = "2022-11-10"; + src = fetchFromGitHub { + owner = "glacambre"; + repo = "firenvim"; + rev = "17a189f0f1e2d4197e00cd56dbeaed8c268bac8c"; + sha256 = "1fwwmvl1zciffwjf6iskqa5qychknnc300y9ympg51hlxzmm0vpz"; + }; + meta.homepage = "https://github.com/glacambre/firenvim/"; + }; + flake8-vim = buildVimPluginFrom2Nix { pname = "flake8-vim"; version = "2020-10-20"; @@ -2952,12 +2988,12 @@ final: prev: formatter-nvim = buildVimPluginFrom2Nix { pname = "formatter.nvim"; - version = "2022-11-08"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "mhartington"; repo = "formatter.nvim"; - rev = "804b96c0b7fea538af1a0a31daa2dabed0b16ad4"; - sha256 = "13wxjyzr1hq8iaa85yxqsa53ja4ccrq395q2gsk3g4vvjxcsw9wy"; + rev = "8a4c961330cc4688087f23d18fa7d2f1af9a4902"; + sha256 = "1s7ckv8xj8pjbl99niz3bb15ybhjvhqhs0vxj1a0vanfi8n4pjlb"; }; meta.homepage = "https://github.com/mhartington/formatter.nvim/"; }; @@ -2976,12 +3012,12 @@ final: prev: friendly-snippets = buildVimPluginFrom2Nix { pname = "friendly-snippets"; - version = "2022-12-13"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "rafamadriz"; repo = "friendly-snippets"; - rev = "2379c6245be10fbf0ebd057f0d1f89fe356bf8bc"; - sha256 = "10xxrx62mb71mh6q2zm82zkgbghlgq39fnqsaig3p947qjlinndn"; + rev = "1a6a02350568d6830bcfa167c72f9b6e75e454ae"; + sha256 = "0n4ia1g0jr4a4d27mjadwddmg5bqj4bgiy6vych4kmpz5yknk5i8"; }; meta.homepage = "https://github.com/rafamadriz/friendly-snippets/"; }; @@ -3084,24 +3120,24 @@ final: prev: fzf-lua = buildVimPluginFrom2Nix { pname = "fzf-lua"; - version = "2022-12-13"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "ibhagwan"; repo = "fzf-lua"; - rev = "b1dea843c2f4c623ac974afc074ce832a29f8548"; - sha256 = "1gfxk41h5ywv0i3xwf05mrrvnjs8h253saazm32if0sci7m6x99s"; + rev = "5abf66f63bf08121dd4e917488b59ccb693eee12"; + sha256 = "0nf3gqvzsk4cda5r0afa979cxfsjq9smy4dyjpw2dhyxrm32a5cc"; }; meta.homepage = "https://github.com/ibhagwan/fzf-lua/"; }; fzf-vim = buildVimPluginFrom2Nix { pname = "fzf.vim"; - version = "2022-09-22"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "junegunn"; repo = "fzf.vim"; - rev = "9ceac718026fd39498d95ff04fa04d3e40c465d7"; - sha256 = "1zyypxi8kv3gcc8crwkd52c1nnp06yqdyz9ici02sq121lpdfklg"; + rev = "fd7fab77b20fdf09180cabdd660d8c3b7fe7ca1a"; + sha256 = "1shljxj04vrifkrqk5mzldl5qwxf196h01bvxpa03kf20yl39wvd"; }; meta.homepage = "https://github.com/junegunn/fzf.vim/"; }; @@ -3240,12 +3276,12 @@ final: prev: gitsigns-nvim = buildNeovimPluginFrom2Nix { pname = "gitsigns.nvim"; - version = "2022-12-15"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "lewis6991"; repo = "gitsigns.nvim"; - rev = "683187285385a0dde6c62e2e6b16e325effdcf04"; - sha256 = "1j4kwrbvgf9q4n4lphx36ml7ic94f7x34w5chl7dbr7ljpv1372w"; + rev = "2ab3bdf0a40bab53033048c6be75bda86316b55d"; + sha256 = "13j5cmrd54cx9d8rirmys01xgmf90ylc3wb5dzmsdjc7hy0viha2"; }; meta.homepage = "https://github.com/lewis6991/gitsigns.nvim/"; }; @@ -3286,6 +3322,18 @@ final: prev: meta.homepage = "https://github.com/ellisonleao/glow.nvim/"; }; + godbolt-nvim = buildVimPluginFrom2Nix { + pname = "godbolt.nvim"; + version = "2022-12-17"; + src = fetchFromGitHub { + owner = "p00f"; + repo = "godbolt.nvim"; + rev = "c7b3785afb3fcc28088acbddfba588d7552f664d"; + sha256 = "0r5yfjhfkkpqpghy7pid7wd5r75cqhxh14iamvh65lmi79hs0hn3"; + }; + meta.homepage = "https://github.com/p00f/godbolt.nvim/"; + }; + golden-ratio = buildVimPluginFrom2Nix { pname = "golden-ratio"; version = "2022-06-28"; @@ -3312,12 +3360,12 @@ final: prev: goto-preview = buildVimPluginFrom2Nix { pname = "goto-preview"; - version = "2022-10-22"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "rmagatti"; repo = "goto-preview"; - rev = "778cf600684a87eb36f9bb469346cfa8d5384a76"; - sha256 = "1f4mxr73q1jgfrfir6ydmaa165fbhzmayxrl1srwx1n96ws5q4fg"; + rev = "de58c6538f6625de52e40442337fda00e77d17b3"; + sha256 = "0a44hsww02m6dc7sfqq81wks5hy7yd12rcz9jl576ris4r960vp3"; }; meta.homepage = "https://github.com/rmagatti/goto-preview/"; }; @@ -3372,24 +3420,24 @@ final: prev: gruvbox-flat-nvim = buildVimPluginFrom2Nix { pname = "gruvbox-flat.nvim"; - version = "2022-10-17"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "eddyekofo94"; repo = "gruvbox-flat.nvim"; - rev = "45d485921bc667956d843ee6777da7071ebca5d8"; - sha256 = "1bhyz70alv9mmm32xpa1aqjrnrczamwpjc7f27y1ia5h6wga8g5d"; + rev = "172269867994c0da7adcf02e89a068cda85eb805"; + sha256 = "10wamh4f8kkydgj0wckbaajzc1cyc04q9bidkz612vj14809dc6w"; }; meta.homepage = "https://github.com/eddyekofo94/gruvbox-flat.nvim/"; }; gruvbox-material = buildVimPluginFrom2Nix { pname = "gruvbox-material"; - version = "2022-12-13"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "sainnhe"; repo = "gruvbox-material"; - rev = "dca3fbce664de8d52ed5fcfbc0f0bc09d2f8a560"; - sha256 = "114zhhi9amkrdb9q6amasd81qbal7hlh9ywj4fvhgrqka7l5qazb"; + rev = "f4b9fd3b4795fe138aea93dd098112442108d277"; + sha256 = "13nphydsbp8vldjfffxc6l5x818lb3ciamiidf77nij50pi6dyx3"; }; meta.homepage = "https://github.com/sainnhe/gruvbox-material/"; }; @@ -3467,12 +3515,12 @@ final: prev: haskell-tools-nvim = buildVimPluginFrom2Nix { pname = "haskell-tools.nvim"; - version = "2022-12-12"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "haskell-tools.nvim"; - rev = "eefbcd2b1bd0b0e5ef8fcc2c087017db1e126d66"; - sha256 = "1gk3471lz4mg2k3jsl5y2jh3a16b564s6907i9bhprc4mgq5p7bg"; + rev = "1125fedcc96b7bc9d532d564f8ae4b09a82b0cf3"; + sha256 = "1l8qp4g1cfc2dbnp28ax6dnnymj39h9zq76kn7s5jskqi5p2cj45"; }; meta.homepage = "https://github.com/MrcJkb/haskell-tools.nvim/"; }; @@ -4005,6 +4053,18 @@ final: prev: meta.homepage = "https://github.com/dundalek/lazy-lsp.nvim/"; }; + lazy-nvim = buildVimPluginFrom2Nix { + pname = "lazy.nvim"; + version = "2022-12-23"; + src = fetchFromGitHub { + owner = "folke"; + repo = "lazy.nvim"; + rev = "a973c2edc2167012d4721a784a0da46906cf005c"; + sha256 = "1cjm24n295hm4ijpccyx1sns35n6rmz3ic07n15hvs8p2rgbk65b"; + }; + meta.homepage = "https://github.com/folke/lazy.nvim/"; + }; + lazygit-nvim = buildVimPluginFrom2Nix { pname = "lazygit.nvim"; version = "2022-11-05"; @@ -4019,12 +4079,12 @@ final: prev: lean-nvim = buildVimPluginFrom2Nix { pname = "lean.nvim"; - version = "2022-12-09"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "Julian"; repo = "lean.nvim"; - rev = "60a0ab74cb1bded492cebf2f5f4f25868b52d1ee"; - sha256 = "1rqgb90dh91l4pgkj6gl79lmnxynmr2w8iiwpx3rvyfbpsrkqyhi"; + rev = "0f7326f7e55ddbb69c057051566f5212d902b7f3"; + sha256 = "08kyanj07vs0f125kbwj6s3plxmy90a2g03w9xyfis7ccigysyv7"; }; meta.homepage = "https://github.com/Julian/lean.nvim/"; }; @@ -4055,24 +4115,24 @@ final: prev: leap-nvim = buildVimPluginFrom2Nix { pname = "leap.nvim"; - version = "2022-12-14"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "ggandor"; repo = "leap.nvim"; - rev = "5e7e4462cc4b9e6a13e0f25b81d88d8b331cb29f"; - sha256 = "1dp35q869qiw94jwfvc174vq7siggxz263srqs31gd9ivl6c2q7q"; + rev = "a5c9504290832e6bdbbb6265fd1ff02fc6485d20"; + sha256 = "1iz0h1nbsgyfmfdagpsg16drwqvclwciihky9ynr5kwxcsc60f88"; }; meta.homepage = "https://github.com/ggandor/leap.nvim/"; }; legendary-nvim = buildVimPluginFrom2Nix { pname = "legendary.nvim"; - version = "2022-12-08"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "mrjones2014"; repo = "legendary.nvim"; - rev = "7be09ac0cf0ac12d65e41c706822a24eb0b92971"; - sha256 = "08wz13l9lhqx21l1d32724mqpk3x10kakbw8r88isnwi8psbfs9r"; + rev = "f53ef425b1b6cb9dc907a054755138345fd2fd57"; + sha256 = "1jyakdsn285l7mqxvr80sd4p175s17xd44pslqmgippwqbdgj8ns"; }; meta.homepage = "https://github.com/mrjones2014/legendary.nvim/"; }; @@ -4163,12 +4223,12 @@ final: prev: lightline-bufferline = buildVimPluginFrom2Nix { pname = "lightline-bufferline"; - version = "2022-12-12"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "mengelbrecht"; repo = "lightline-bufferline"; - rev = "e4db24252d9b1bd7b329511e8caa69fefed67362"; - sha256 = "0lf8sbf1m0y76sqcqv7faybiballgy9n775vv33v80ax2rmgq62y"; + rev = "c0199a7027da92d9770d1e2a9f4bf6257c7ec7ef"; + sha256 = "0q0s9gbakmlyd13mb33gq41brkf0qs2isjaz7fd5xpgakqsldl3b"; }; meta.homepage = "https://github.com/mengelbrecht/lightline-bufferline/"; }; @@ -4426,12 +4486,12 @@ final: prev: lsp_signature-nvim = buildVimPluginFrom2Nix { pname = "lsp_signature.nvim"; - version = "2022-12-15"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "ray-x"; repo = "lsp_signature.nvim"; - rev = "e528f7313dc67aa1f8caa796a56232af5a569871"; - sha256 = "16cfgkring4g01aam7plw0rgrqvq8xxkmlvax0kfbjlviw4qfbwl"; + rev = "1979f1118e2b38084e7c148f279eed6e9300a342"; + sha256 = "0di84pidxf0mx2gcna3lhisx3drc1i2wajcrrc2dv7n122fv17yy"; }; meta.homepage = "https://github.com/ray-x/lsp_signature.nvim/"; }; @@ -4486,24 +4546,24 @@ final: prev: lualine-nvim = buildVimPluginFrom2Nix { pname = "lualine.nvim"; - version = "2022-11-28"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "nvim-lualine"; repo = "lualine.nvim"; - rev = "bfa0d99ba6f98d077dd91779841f1c88b7b5c165"; - sha256 = "1yr4p08s0yll3g39k62735g0bz21v0vg5f0vxizwhyy2cx49n90f"; + rev = "fffbcb829288c3ca366f17cdb8d46aefb5c1d6f3"; + sha256 = "08yz4p6y5pg8ak4dkpggsk89n6f6lv78rglh1q88zh5ymjbqs8mv"; }; meta.homepage = "https://github.com/nvim-lualine/lualine.nvim/"; }; luasnip = buildVimPluginFrom2Nix { pname = "luasnip"; - version = "2022-12-11"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "l3mon4d3"; repo = "luasnip"; - rev = "8b25e74761eead3dc47ce04b5e017fd23da7ad7e"; - sha256 = "0jf85bynp91dyg4xx06w4ha0cim6m5v26g5wxpml3flmwglj58fa"; + rev = "5570fd797eae0790affb54ea669a150cad76db5d"; + sha256 = "0052rkqyhniz6djz7gkblmdlndllwv9jhcl6kh973qq23pdb00n4"; fetchSubmodules = true; }; meta.homepage = "https://github.com/l3mon4d3/luasnip/"; @@ -4523,12 +4583,12 @@ final: prev: lush-nvim = buildNeovimPluginFrom2Nix { pname = "lush.nvim"; - version = "2022-11-09"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "rktjmp"; repo = "lush.nvim"; - rev = "979f4d206e7111c2b710aa85cc723f6140d2ec98"; - sha256 = "1xmndvhxjzb6lsfd0i7ifyqk0p37hyb9qy6l3aj75k7ifd4bsy2w"; + rev = "4cc81a12731fbefce1582a940b755691eb3eb6d1"; + sha256 = "0zwb9d8makr9k20cdf7fajhk3frbh4n4p1zajxig0f3ws867zjqx"; }; meta.homepage = "https://github.com/rktjmp/lush.nvim/"; }; @@ -4583,23 +4643,23 @@ final: prev: material-nvim = buildVimPluginFrom2Nix { pname = "material.nvim"; - version = "2022-11-20"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "marko-cerovac"; repo = "material.nvim"; - rev = "2a80aea83a69d54c69fa1bb9b7c27ae396bf2390"; - sha256 = "1l3vvf09wvqhrrk3ww99mc4zbajjr4hmr4g7cm8v6z71r6s0rp00"; + rev = "0560abaac9369d1027169a50e5219c3e069d00f3"; + sha256 = "190cw0fzrswigq1vc43nmf28mzhbn82wg2xhiq5rymbdf1lvpm2m"; }; meta.homepage = "https://github.com/marko-cerovac/material.nvim/"; }; material-vim = buildVimPluginFrom2Nix { pname = "material.vim"; - version = "2022-09-14"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "kaicataldo"; repo = "material.vim"; - rev = "81d5d0bb30677b0846a2721a600f2f45db6d10a7"; + rev = "bdccc06f963d722111fc8887b22473997750b2de"; sha256 = "1j23wi0hh5h0pc0rk5dxvsc60k484h5haa2gfxzahjqd7kzil4y8"; }; meta.homepage = "https://github.com/kaicataldo/material.vim/"; @@ -4619,12 +4679,12 @@ final: prev: mini-nvim = buildVimPluginFrom2Nix { pname = "mini.nvim"; - version = "2022-12-11"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "echasnovski"; repo = "mini.nvim"; - rev = "82e04074117635ebe7ae2202953a0c3d78db5146"; - sha256 = "1rr5xb4nkwm4vjk8v2065dy7d55qgh8wr6fhgash2gzrfjvm7b8a"; + rev = "c18abb4d0f1e2507676c22fdb9e4af4705c2a808"; + sha256 = "1zm30nraa6n89nri9487bf9vhllvgmpxlfzwqhn3s83w5zw1b899"; }; meta.homepage = "https://github.com/echasnovski/mini.nvim/"; }; @@ -4955,12 +5015,12 @@ final: prev: neo-tree-nvim = buildVimPluginFrom2Nix { pname = "neo-tree.nvim"; - version = "2022-11-27"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "nvim-neo-tree"; repo = "neo-tree.nvim"; - rev = "7c6903b05b13c5d4c3882c896a59e6101cb51ea7"; - sha256 = "1ycwasdl48w2rwmwq8na63dk6wb6vdx7hnrwhbyxy6z9p207wpwj"; + rev = "73a90f6a736b51168ed05d89ed8872f75b98471c"; + sha256 = "0dpss9ydw3z8dkmjjagn799347svlw8yyp72h77z30k7awlcwqpx"; }; meta.homepage = "https://github.com/nvim-neo-tree/neo-tree.nvim/"; }; @@ -4979,12 +5039,12 @@ final: prev: neoconf-nvim = buildVimPluginFrom2Nix { pname = "neoconf.nvim"; - version = "2022-12-16"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "folke"; repo = "neoconf.nvim"; - rev = "456cb79ad62081bf5965628398774be0ea9d1f29"; - sha256 = "1946bg5b95flabd8h2l2z15w4alm06i7q0sh17vddaqhgf912psf"; + rev = "dd35a9b9172ae0f87eb407111dec754cf321002a"; + sha256 = "0ly5bx508iar3qgc6gx79hca9s47wd13d9pyr9h0xryqyrgsm027"; }; meta.homepage = "https://github.com/folke/neoconf.nvim/"; }; @@ -5003,12 +5063,12 @@ final: prev: neodev-nvim = buildVimPluginFrom2Nix { pname = "neodev.nvim"; - version = "2022-12-14"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "folke"; repo = "neodev.nvim"; - rev = "c87f3c9ffb256846e2a51f0292537073ca62d4d0"; - sha256 = "0b61x4sjp5lrvywbdqwis6v7wmh1cvhddpl9dhiq0ysjpj1gf8ww"; + rev = "c5f0a814abf89b5b1e3cfed95322813939bdc0c5"; + sha256 = "0aji887c2rmn9286jdx5wf1nj4gpyr0n1aar7rwx77k4va5fm06a"; }; meta.homepage = "https://github.com/folke/neodev.nvim/"; }; @@ -5087,12 +5147,12 @@ final: prev: neorg = buildVimPluginFrom2Nix { pname = "neorg"; - version = "2022-12-05"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg"; - rev = "a79bf5969e27a3f1f1478c9b05c187815f2b2390"; - sha256 = "1a8w2f5s50j4zzwkshxmj48lch7vd680hmmq3scl4q0knvjdyd9h"; + rev = "2c18f831effb5f3f383b2049902be23ea0dd7a8e"; + sha256 = "10lwjrwxjmag2jbhpzfv9g6zpl7mlmv646gr062pragb2cphrm7n"; }; meta.homepage = "https://github.com/nvim-neorg/neorg/"; }; @@ -5315,24 +5375,24 @@ final: prev: nlsp-settings-nvim = buildVimPluginFrom2Nix { pname = "nlsp-settings.nvim"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "tamago324"; repo = "nlsp-settings.nvim"; - rev = "3a32b1585c2af4b782074a2570b5d0c406a30914"; - sha256 = "0cv1c4z47ld0q0mw6fr49iymxa854ai2r1dkk6nwif1sl73hxz02"; + rev = "8f67460e1ae721b91a9439243af5e42d6f3930d6"; + sha256 = "1f8rpchb7gr2wzl1xy1ja74h052bc0cig05a8549l5f8kg3x0qip"; }; meta.homepage = "https://github.com/tamago324/nlsp-settings.nvim/"; }; nlua-nvim = buildVimPluginFrom2Nix { pname = "nlua.nvim"; - version = "2021-12-14"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "tjdevries"; repo = "nlua.nvim"; - rev = "3603ee35ed928acd961847aeac30c92a3a048997"; - sha256 = "0bdpplmgn0cvlgw37jn8qhl91qx4sjsyl88r1qzp6c0gjn0qfwi6"; + rev = "01aa428ff00605d52d0c0ece560f6a6d7971726b"; + sha256 = "1v80qmhhqc1frpvnz42wa84qaz6xkasyrz59aisifp1vqcn01lgk"; }; meta.homepage = "https://github.com/tjdevries/nlua.nvim/"; }; @@ -5351,12 +5411,12 @@ final: prev: noice-nvim = buildVimPluginFrom2Nix { pname = "noice.nvim"; - version = "2022-12-03"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "folke"; repo = "noice.nvim"; - rev = "e013b6ebbad0fab34013be6f073da38c53c9e1dc"; - sha256 = "1pxnj2m7v8m943xs24hspggwhwyv0nla96d38mh1r8bllhh367k8"; + rev = "585d24ec6e3fb4288414f864cfe2de7d025e8216"; + sha256 = "0z7d3nfr5vydk2pwjhl0zlw0ipnbqhbw02sbk6j7vrcw6l0aqd7f"; }; meta.homepage = "https://github.com/folke/noice.nvim/"; }; @@ -5375,12 +5435,12 @@ final: prev: nord-nvim = buildVimPluginFrom2Nix { pname = "nord.nvim"; - version = "2022-12-14"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "shaunsingh"; repo = "nord.nvim"; - rev = "8bbb85992dc6a92625e3b567884a120e194204c4"; - sha256 = "1qh4v3s8xxv3ma37ydipnprhvjncdk4g3hq7mhx8336hvr1rakyx"; + rev = "418e2507dcff84a7cb993ae4f37697b98e0c92ca"; + sha256 = "0zjlxq8xa7and5952lxz0irklxsrmh7k4bn905ggcd62hbpd5q6v"; }; meta.homepage = "https://github.com/shaunsingh/nord.nvim/"; }; @@ -5411,24 +5471,24 @@ final: prev: nui-nvim = buildVimPluginFrom2Nix { pname = "nui.nvim"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "MunifTanjim"; repo = "nui.nvim"; - rev = "7427f979cc0dc991d8d177028e738463f17bcfcb"; - sha256 = "0z2yxlvm10wcbgjbbyyl6zranv5f81mn29vq6b4q32l84ah8kvpw"; + rev = "5d1ca66829d8fac9965cd18fcc2cd9aa49ba1ea5"; + sha256 = "17qddgg15abmigj45lilfircf0rq78hl48va56ay53sjy1j52jhz"; }; meta.homepage = "https://github.com/MunifTanjim/nui.nvim/"; }; null-ls-nvim = buildVimPluginFrom2Nix { pname = "null-ls.nvim"; - version = "2022-12-14"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "null-ls.nvim"; - rev = "5d8e925d31d8ef8462832308c016ac4ace17597a"; - sha256 = "0vb6s4djzj4vyh5k0b3rs3vf01c4wy6q6w6rksgmjv6szh76zmav"; + rev = "b26851b3e7ac1c0c85666f8a74e36aef2acb89c6"; + sha256 = "0djmqka2b9yikjr1pllb572lvws86769z9bzj7xj984x1v1xf7rz"; }; meta.homepage = "https://github.com/jose-elias-alvarez/null-ls.nvim/"; }; @@ -5471,24 +5531,24 @@ final: prev: nvim-autopairs = buildVimPluginFrom2Nix { pname = "nvim-autopairs"; - version = "2022-12-07"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "windwp"; repo = "nvim-autopairs"; - rev = "9fa996123031b4cad100bd5afad04384a622c8a7"; - sha256 = "0js7snmg9223d54iayadlm3bjn54fs3mzqck26cpn4fa5m1nc295"; + rev = "b5994e6547d64f781cfca853a1aa6174d238fe0e"; + sha256 = "0xdyldrhzrva955qzm6ji6z2cs6yhn266x65p932wsl8498zkq1a"; }; meta.homepage = "https://github.com/windwp/nvim-autopairs/"; }; nvim-base16 = buildVimPluginFrom2Nix { pname = "nvim-base16"; - version = "2022-11-02"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "RRethy"; repo = "nvim-base16"; - rev = "bd172d833538c48bd3d589fbc8bc2f3a395ecc7b"; - sha256 = "1h9d127s9w7qiq54596wsdgjbmhxvd7ik055n923wr4r84087vcn"; + rev = "be09864ae8b60f6f96d42ed60752dcfa3b7d31b5"; + sha256 = "02hy4358jqdf8pwis4w7z8rg4qw039c5cjvjlgbw4fzb02rqpvf6"; }; meta.homepage = "https://github.com/RRethy/nvim-base16/"; }; @@ -5507,12 +5567,12 @@ final: prev: nvim-bqf = buildVimPluginFrom2Nix { pname = "nvim-bqf"; - version = "2022-12-05"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-bqf"; - rev = "3389264042e4590ed32ce26d7e47b17ec4e6e6d5"; - sha256 = "0l9fcy2ic5n7krngrz0cv8darb2kv3whhv2lvf312cx9xmjspq2f"; + rev = "b418b0a241d36509196944a6f6bee886c775d54f"; + sha256 = "1cjafp91jk9rrkiibsd7rp863gs51xpyrpkkprfy9x45nx6ihrmw"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-bqf/"; }; @@ -5543,24 +5603,24 @@ final: prev: nvim-cmp = buildNeovimPluginFrom2Nix { pname = "nvim-cmp"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "nvim-cmp"; - rev = "8bbaeda725d5db6e4e1be2867a64b43bf547cf06"; - sha256 = "1ldbvspz6aam78d47ldpa7bv4z419bzsk5nhli75mz0vzidfvrw5"; + rev = "d09b0c396aaa078cdfe78316ec06940971136e85"; + sha256 = "1vf1j10mibc3jdz3d1skw9gy14vg5fnpzzlgvfcd7fgh3gm6lj7h"; }; meta.homepage = "https://github.com/hrsh7th/nvim-cmp/"; }; nvim-code-action-menu = buildVimPluginFrom2Nix { pname = "nvim-code-action-menu"; - version = "2022-12-14"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "weilbith"; repo = "nvim-code-action-menu"; - rev = "885105039b30f90096e5cc3b09e2fac9316604a8"; - sha256 = "17cp12pv7gb1pk93p9gchmsdsa3dfp9zqs6irisr3vb0azda4k8k"; + rev = "e4399dbaf6eabff998d3d5f1cbcd8d9933710027"; + sha256 = "01pbr8z8fn16vsdlsxrhd83rbx41pah477xr6p01lnmsqzwg3k7f"; }; meta.homepage = "https://github.com/weilbith/nvim-code-action-menu/"; }; @@ -5651,36 +5711,36 @@ final: prev: nvim-dap = buildVimPluginFrom2Nix { pname = "nvim-dap"; - version = "2022-12-12"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap"; - rev = "68d96871118a13365f3c33e4838990030fff80ec"; - sha256 = "0kb2kc61fhnf4g95vy5mhck4jm9ijlgmv3rv613j0i9aslnlipm1"; + rev = "6f2ea9e33b48a51849ec93c6c38148a5372018e4"; + sha256 = "0bjzqwvxn57n3rpx3sjk4cqdx876cgrbw744d86pzd1lrzdjixqm"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap/"; }; nvim-dap-go = buildVimPluginFrom2Nix { pname = "nvim-dap-go"; - version = "2022-12-15"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "leoluz"; repo = "nvim-dap-go"; - rev = "bd9823da22165ea4aa7ec232e8c3a9b3158e017a"; - sha256 = "0ii1867shcmwzzjkljhcyyfinl8y4xw8pl22ah5kydap4ra1s24p"; + rev = "8aa9e7ef317182b33fc3e04651041e8d367cc73a"; + sha256 = "0aifkj73vxr6s263g63bl269nbx6hvbk5sf0mq0m3y4z9ia8lf03"; }; meta.homepage = "https://github.com/leoluz/nvim-dap-go/"; }; nvim-dap-python = buildVimPluginFrom2Nix { pname = "nvim-dap-python"; - version = "2022-11-01"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap-python"; - rev = "27a0eff2bd3114269bb010d895b179e667e712bd"; - sha256 = "1pypxg18qj74yjlfrr9wdd0w0hlh2mvd5xv381rhnzvb4h8hnp2j"; + rev = "d4400d075c21ed8fb8e8ac6a5ff56f58f6e93531"; + sha256 = "1glhxrv57gc3g60i876d5p3429z4kl6mhkbvrf41kvcqqb8m21m0"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap-python/"; }; @@ -5735,12 +5795,12 @@ final: prev: nvim-fzf-commands = buildVimPluginFrom2Nix { pname = "nvim-fzf-commands"; - version = "2022-11-23"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "vijaymarupudi"; repo = "nvim-fzf-commands"; - rev = "2379ca4275f7822d1c0e4b50414d0b06696de696"; - sha256 = "0pvjf3afa210zk1y97q5zdsc150r9fxrp7l4ivymhli5g00whmzh"; + rev = "52f9450cd69f462aa1ecc5dc3e05ef3b77840e4f"; + sha256 = "03q1zzyarjirays1ih6d2d5jdy5hac7sglxa95n5hlrap3w9y859"; }; meta.homepage = "https://github.com/vijaymarupudi/nvim-fzf-commands/"; }; @@ -5783,24 +5843,24 @@ final: prev: nvim-highlite = buildVimPluginFrom2Nix { pname = "nvim-highlite"; - version = "2022-12-12"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "Iron-E"; repo = "nvim-highlite"; - rev = "44895245d10d98b221ba60858a4a94fd229b54ff"; - sha256 = "0ns32lk3k1dshvikbpm43nkciiv9d0frwm1bp8721p9w1cgi0amm"; + rev = "a6e397d9f901d419ea9d6fb09019c918bc6e9f69"; + sha256 = "1sl53z2pm2niysax90a8fiqcqdzhncjb35ap9rwx5xxjbpgjv8i2"; }; meta.homepage = "https://github.com/Iron-E/nvim-highlite/"; }; nvim-hlslens = buildVimPluginFrom2Nix { pname = "nvim-hlslens"; - version = "2022-12-04"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-hlslens"; - rev = "7fb804f504fd0935d65246a1d5ddea73d9ceefc9"; - sha256 = "1fsqpd3idfqf5r95m2w32ajvldvha3844hl1x4hnwmwn26jn3iib"; + rev = "0e59a9d29c5811dfc1ffcb032e18064fa2008b4e"; + sha256 = "05gz02npc4bw25jh8cm3ljv4p2iy6p65y6nv335b8fhm682i647f"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-hlslens/"; }; @@ -5819,12 +5879,12 @@ final: prev: nvim-jdtls = buildVimPluginFrom2Nix { pname = "nvim-jdtls"; - version = "2022-12-14"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-jdtls"; - rev = "69ad133ef7296b26f6f05ed5d0960628fbb15a83"; - sha256 = "0z3xsn52lgvcdfgc06w4b4m2hyyd6nzdlygwk5n97ryjaahhm07j"; + rev = "a5c6f38f8151d7b4f5b32c005a95022fa66f4c9d"; + sha256 = "1fdyb3cxqyj9iws54nhm76wnfadwhwd3ld0m3vpjyl6p85ss7iqa"; }; meta.homepage = "https://github.com/mfussenegger/nvim-jdtls/"; }; @@ -5903,12 +5963,12 @@ final: prev: nvim-lspconfig = buildVimPluginFrom2Nix { pname = "nvim-lspconfig"; - version = "2022-12-16"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "neovim"; repo = "nvim-lspconfig"; - rev = "e95c12cea141632d3502fad4fb1c9260a91a65f4"; - sha256 = "19xmj232j9lir27486qksf86f1wwblv7v9b7lpmial1p1nfj8m50"; + rev = "3e2cc7061957292850cc386d9146f55458ae9fe3"; + sha256 = "0jk84lsx79as2pigcgnqpvgz8ppp1dmcf0lvwd5wfd0dcwazjnz1"; }; meta.homepage = "https://github.com/neovim/nvim-lspconfig/"; }; @@ -5999,12 +6059,12 @@ final: prev: nvim-nonicons = buildVimPluginFrom2Nix { pname = "nvim-nonicons"; - version = "2022-11-20"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "yamatsum"; repo = "nvim-nonicons"; - rev = "c9b3a3818c1f02ed584a822ed1471d7f1d3e23fe"; - sha256 = "1s6625pksvpi6ri8d1l6szvjf1m9nks92zvd8ff7h2sfyvf3bm5w"; + rev = "68ecb6476f1b96d03c702dce6cf3ef1e5171c9a8"; + sha256 = "1vmzl5b3a07kh8b4wqqxd05sygvlyxq9vkrsshn2lrxmpbdg6227"; }; meta.homepage = "https://github.com/yamatsum/nvim-nonicons/"; }; @@ -6095,24 +6155,24 @@ final: prev: nvim-spectre = buildVimPluginFrom2Nix { pname = "nvim-spectre"; - version = "2022-12-07"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "nvim-pack"; repo = "nvim-spectre"; - rev = "c332c9c0574a531392818baf4020b86ba5575942"; - sha256 = "0xkf01sr7pkm26xq8spns8765gpj7ibpdp4cx9klw6a9fx8sir9q"; + rev = "68ea562b485b6593e325e7916c3bd6e833d433e7"; + sha256 = "1r32ad6q18y3w3adkdgscya6gw9iynab5pgqv9an3924vzpbvi8w"; }; meta.homepage = "https://github.com/nvim-pack/nvim-spectre/"; }; nvim-surround = buildVimPluginFrom2Nix { pname = "nvim-surround"; - version = "2022-12-11"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "kylechui"; repo = "nvim-surround"; - rev = "6cc6b54d3728a17e34bb5c9b9db05c7e5690813d"; - sha256 = "06sbki4m8za9zsj643fj5wzx44xsa1nv23as1m9ip99cwqrvxqcc"; + rev = "f0077c3726d243eeaabd2ec280216e8c3ca7da9f"; + sha256 = "0wf35dpz4adfd2c11dk7s1vgkqspy4kgqsnh49vzjjlyv6s493df"; }; meta.homepage = "https://github.com/kylechui/nvim-surround/"; }; @@ -6131,36 +6191,36 @@ final: prev: nvim-tree-lua = buildVimPluginFrom2Nix { pname = "nvim-tree.lua"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-tree"; repo = "nvim-tree.lua"; - rev = "87409bb4afd0093193e1364faa47327fbfdfca87"; - sha256 = "0bsajg0d6fwzj6jgxkq9z44rf7jzd31yfn7wc8wkzhhlcc1fx69i"; + rev = "9e4c39572f631bb60ee15cb9d46e1daa9927a45e"; + sha256 = "0fw8c8jzpw2vrfh1ac27jbs0kgh3f98pixbwxwak98iq6a03vv50"; }; meta.homepage = "https://github.com/nvim-tree/nvim-tree.lua/"; }; nvim-treesitter = buildVimPluginFrom2Nix { pname = "nvim-treesitter"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter"; - rev = "36c6826274ac85e04558e875a30e82aca676e3fe"; - sha256 = "196klrl7yzawafzklrwcpz7qwrklwaaki653r40k95ljxsc5bf2r"; + rev = "cf6b5cb1ede83741d5cca7071fd75df3b942d3ca"; + sha256 = "169nnb3q4qj5cx1plzgvhkbyva5z2zwb2w8bcg9pj3a81p19wcwm"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter/"; }; nvim-treesitter-context = buildVimPluginFrom2Nix { pname = "nvim-treesitter-context"; - version = "2022-12-14"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter-context"; - rev = "5d0367be7471f50c6b5f8338521b9e851b1d177d"; - sha256 = "0dqnxka1ihyvvx1l8h968k2a5h3045zwwp9hzqk4b5c3q1qyrgc8"; + rev = "d28654b012d4c56beafec630ef7143275dff76f8"; + sha256 = "1wv94ni2cfifvdc9a681pfv24cxzgcbpmrygl0vz594702yi3k67"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-context/"; }; @@ -6191,12 +6251,12 @@ final: prev: nvim-treesitter-textobjects = buildVimPluginFrom2Nix { pname = "nvim-treesitter-textobjects"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter-textobjects"; - rev = "e0d2c72894db60001650b36357d3480f17e1c340"; - sha256 = "14c8m1s6c8hwn71797ir3rvwpjw1hgjcn28w1mb14w6781c8710k"; + rev = "b062311ea6da061756ebb591d30f61c9e5b44141"; + sha256 = "1xd79smq4wpr1d38x0lw9zdxslhbgg5s986sk6k6l5vqs71i3gad"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-textobjects/"; }; @@ -6287,12 +6347,12 @@ final: prev: nvimdev-nvim = buildVimPluginFrom2Nix { pname = "nvimdev.nvim"; - version = "2022-12-08"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "neovim"; repo = "nvimdev.nvim"; - rev = "3220bb394ab059888b1b0498bbe43d9435ccee22"; - sha256 = "01alhc1wlh7g0b1p0x2q49v4srh2vqiwcgv7sjis89wz2dnq5n48"; + rev = "63eba53a0ed93c8495623aee194ee0d4d44162f0"; + sha256 = "00acn9iq7p00280ixwh9325wh6k4r8a1s84afwsz3a2yvsvyssrf"; }; meta.homepage = "https://github.com/neovim/nvimdev.nvim/"; }; @@ -6383,12 +6443,12 @@ final: prev: onedarkpro-nvim = buildVimPluginFrom2Nix { pname = "onedarkpro.nvim"; - version = "2022-12-15"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "olimorris"; repo = "onedarkpro.nvim"; - rev = "99e0808b21cb3c7815c0a3ec17a4fc0e555d5997"; - sha256 = "09vqfg9dwlwq32b4xzhlgqw48l63qpq86pv291pp3jaghldgbcjb"; + rev = "7a7641e27f922496b4bf8493acd9f2f8da7ff864"; + sha256 = "0b2cm9inkw3wps8snxb09v789gi37k04swb8nfm3swa487r0dgr3"; }; meta.homepage = "https://github.com/olimorris/onedarkpro.nvim/"; }; @@ -6467,12 +6527,12 @@ final: prev: packer-nvim = buildVimPluginFrom2Nix { pname = "packer.nvim"; - version = "2022-12-07"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "wbthomason"; repo = "packer.nvim"; - rev = "64ae65fea395d8dc461e3884688f340dd43950ba"; - sha256 = "106yxm2gi86w8d1k96fr3wfiqnz8z6kkg1c58fvm9izl82anmbxd"; + rev = "dac4088c70f4337c6c40d1a2751266a324765797"; + sha256 = "129axd8cfm5y4n520z63cfsn8pix882f4l4nzvwmf62fqnr292i0"; }; meta.homepage = "https://github.com/wbthomason/packer.nvim/"; }; @@ -6575,12 +6635,12 @@ final: prev: playground = buildVimPluginFrom2Nix { pname = "playground"; - version = "2022-11-17"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "playground"; - rev = "1290fdf6f2f0189eb3b4ce8073d3fda6a3658376"; - sha256 = "1yznmc5a32b4bw0c9q0jfkbd77xmi7rmihfr0f44bcgqdxlp8151"; + rev = "3421bbbfec25a7c54ee041ffb9cb226b69b2b995"; + sha256 = "1zc9wwpb0565fw0g1mmhv2dkdlf57qvh7r133gcij9mp7jh87pgx"; }; meta.homepage = "https://github.com/nvim-treesitter/playground/"; }; @@ -6865,12 +6925,12 @@ final: prev: refactoring-nvim = buildVimPluginFrom2Nix { pname = "refactoring.nvim"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "theprimeagen"; repo = "refactoring.nvim"; - rev = "2677bcc52a13ef43e24c3bd7739bce2ec5ebf66b"; - sha256 = "1di0y9yhv2nq9bk6xpbmkwr0gh1kjsxn8qp0hp4a9hk8k4fkpc1s"; + rev = "2c72385b627e46bb66f23b8a11da40b4bb127506"; + sha256 = "14rbd79nfqzyhqb2bs57q4z9id7kh0r6jjg6g5j6cwqd7fjnaiwf"; }; meta.homepage = "https://github.com/theprimeagen/refactoring.nvim/"; }; @@ -6901,12 +6961,12 @@ final: prev: rest-nvim = buildNeovimPluginFrom2Nix { pname = "rest.nvim"; - version = "2022-12-12"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "rest-nvim"; repo = "rest.nvim"; - rev = "0f26e2afc65d030c5fb7444303b55b9a334202c6"; - sha256 = "1sln2b4kji9cszc225cakiq7h6zm6wsqnfl4ai4py85l1aw43xj8"; + rev = "84e8208c17bbc9e3c092b860db85953ee2d60d17"; + sha256 = "0labx6k5padzc8j270v07gxx3v3vw8kf5xnh5dg6pywpx4lp728h"; }; meta.homepage = "https://github.com/rest-nvim/rest.nvim/"; }; @@ -7033,12 +7093,12 @@ final: prev: satellite-nvim = buildVimPluginFrom2Nix { pname = "satellite.nvim"; - version = "2022-11-30"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "lewis6991"; repo = "satellite.nvim"; - rev = "3bcd90d5cf5e61b6f4a000aaad5b6aa79b9a8bc5"; - sha256 = "1s22ciz284za50yll9avghdfvnfmf7kgv4vrfpzh28qqy11vyj1s"; + rev = "84e47a303a1aa97e2a81df03ef040d41c8192134"; + sha256 = "0jk0jq3kv0i3jr95k9izd2zziws7pimlhxj72aj2pf1mvc7pvb66"; }; meta.homepage = "https://github.com/lewis6991/satellite.nvim/"; }; @@ -7238,12 +7298,12 @@ final: prev: sonokai = buildVimPluginFrom2Nix { pname = "sonokai"; - version = "2022-12-13"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "sainnhe"; repo = "sonokai"; - rev = "aca74a49f192935349c55f4d4e9b531bc1c96052"; - sha256 = "1kqbcd3g16h01wzh6pfmfkv9ka8cjyrq6a4yni8wi5khxk16vmrq"; + rev = "a2a648b709bc52d64504ba4fddedc25690029d8d"; + sha256 = "1h5jbbi22aipsyqrjsl8b9g39i4i0zqrxbrg4i40hbi07l5bb800"; }; meta.homepage = "https://github.com/sainnhe/sonokai/"; }; @@ -7383,12 +7443,12 @@ final: prev: srcery-vim = buildVimPluginFrom2Nix { pname = "srcery-vim"; - version = "2022-12-15"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "srcery-colors"; repo = "srcery-vim"; - rev = "7af46a5b032e3275dc6d3c993d72fb290d51f74d"; - sha256 = "1v5xld3v3i7i2xkp3r1nqcghriikpb2ak7d0a021hjbasm74fbgc"; + rev = "91958b5bcac9dd78d6c66fc75816464fac29e27c"; + sha256 = "18wp8kj8wj2w3x3qk1jlz0hsniw7jn9igps0rcgcfr6122qggh11"; }; meta.homepage = "https://github.com/srcery-colors/srcery-vim/"; }; @@ -7588,12 +7648,12 @@ final: prev: tabby-nvim = buildVimPluginFrom2Nix { pname = "tabby.nvim"; - version = "2022-11-30"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "nanozuki"; repo = "tabby.nvim"; - rev = "ad80d32ba42b0c7f3a06b5754b7f669bf71eadf0"; - sha256 = "1pbbb8w164pzrlsglmc5pls8x1jp3zv97m74hxljpwkiqjzfzfjn"; + rev = "187b604da1a6452c700ce21fdf340ffbea956298"; + sha256 = "0b61qmqzl8vqryy58p9688vhxwhfby6qsygi3720hvvgizxk9jka"; }; meta.homepage = "https://github.com/nanozuki/tabby.nvim/"; }; @@ -7733,12 +7793,12 @@ final: prev: tcomment_vim = buildVimPluginFrom2Nix { pname = "tcomment_vim"; - version = "2022-12-07"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "tomtom"; repo = "tcomment_vim"; - rev = "dd1da14193c10f7f5b91638e438977b48d191aa9"; - sha256 = "1k3f821hc1kzajsb259309m57iwhjrika7i87ayx8pq1mvlxzdvc"; + rev = "b4930f9da28647e5417d462c341013f88184be7e"; + sha256 = "06nlnnrxh3jgnlcbbr7czpaz9v7n2g60mw28lshc14wzqpl01vvx"; }; meta.homepage = "https://github.com/tomtom/tcomment_vim/"; }; @@ -7793,12 +7853,12 @@ final: prev: telescope-file-browser-nvim = buildVimPluginFrom2Nix { pname = "telescope-file-browser.nvim"; - version = "2022-12-04"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-file-browser.nvim"; - rev = "cad567e11131a01f2934930c1efc8b1b09a0dc56"; - sha256 = "0d0l47dmvsba5z8dnywmc55s964wzz3f202amxj5msh9jj051ry3"; + rev = "dcba9a2a385b95b831159ea35d633b488fd73290"; + sha256 = "07kjpnj11sc0yxbf69ajw43psbkvz1ck9knx41dksnvmz0y6n962"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-file-browser.nvim/"; }; @@ -7817,12 +7877,12 @@ final: prev: telescope-fzf-native-nvim = buildVimPluginFrom2Nix { pname = "telescope-fzf-native.nvim"; - version = "2022-12-02"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-fzf-native.nvim"; - rev = "ae9d95da9ff5669eb8e35f758fbf385b3e2fb7cf"; - sha256 = "1appy9vk69wbm1zzgxhpi42y401rkdbkbl4qpiagnqbwkz2wc6i0"; + rev = "fab3e2212e206f4f8b3bbaa656e129443c9b802e"; + sha256 = "0paiaag3aazfv8rr0i43maq34pn3iga3lkjyllhfysqvdm8jk50f"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-fzf-native.nvim/"; }; @@ -7914,12 +7974,12 @@ final: prev: telescope-project-nvim = buildVimPluginFrom2Nix { pname = "telescope-project.nvim"; - version = "2022-10-10"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-project.nvim"; - rev = "ff4d3cea905383a67d1a47b9dd210c4907d858c2"; - sha256 = "16byj7gcyxpn837x096a074vpj67drbd5ndcfpkvp1xyam9604b4"; + rev = "8e8ee37b7210761502cdf2c3a82b5ba8fb5b2972"; + sha256 = "0br4skyavnsk41s45z5qw0ny7g2lamd60c6clmwyrvim6hgqx12b"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-project.nvim/"; }; @@ -7998,12 +8058,12 @@ final: prev: telescope-nvim = buildVimPluginFrom2Nix { pname = "telescope.nvim"; - version = "2022-12-02"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope.nvim"; - rev = "cabf991b1d3996fa6f3232327fc649bbdf676496"; - sha256 = "04h9hsy6az1hm0bcg8vf8vsj9hqbf0fi3q5fksdjpqpcf2m04j75"; + rev = "e960efa60e97df58e089b00270f09d60f27202c8"; + sha256 = "023g8dblp5bp4wa5955drfipwzjaarbxl5xa9pky1ax4pni3i1rw"; }; meta.homepage = "https://github.com/nvim-telescope/telescope.nvim/"; }; @@ -8227,12 +8287,12 @@ final: prev: tokyonight-nvim = buildVimPluginFrom2Nix { pname = "tokyonight.nvim"; - version = "2022-12-14"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "folke"; repo = "tokyonight.nvim"; - rev = "ecae454c303d5190fb0ded096205a99fae16c6d4"; - sha256 = "0h6s5pvsjlrkp0brwrqaib5zijpqqs352v89jjr60kylb36clfb5"; + rev = "8b55a47165348dd1d811f9e1f867bb17bb35a360"; + sha256 = "0glhl3dm4ispxcy1x9g495by6xfdqmvlyhcywjx10kqmi192cwxs"; }; meta.homepage = "https://github.com/folke/tokyonight.nvim/"; }; @@ -8419,12 +8479,12 @@ final: prev: urlview-nvim = buildVimPluginFrom2Nix { pname = "urlview.nvim"; - version = "2022-12-06"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "axieax"; repo = "urlview.nvim"; - rev = "53c53bce3bffa96be2b5f855d7ffb1d1f208eee5"; - sha256 = "1hdx4k9wcn3j9zyaw0d4fg83w7phn59hh7zblqhzd8z61h8kfdpa"; + rev = "9ebb11fff1548ae9406bba8a06d9caabf686ef9a"; + sha256 = "0yjqc4is8zaf2m04a2kh079jp2635nn8nbpkqak416hgigs1agfc"; }; meta.homepage = "https://github.com/axieax/urlview.nvim/"; }; @@ -8827,12 +8887,12 @@ final: prev: vim-airline = buildVimPluginFrom2Nix { pname = "vim-airline"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "6a4c82c950cc10388117e927b89a72a557e5944c"; - sha256 = "1mqlynscx1qhd2gxbz9bry6v4i28schhqcd1h4vvqc1lkcv3y4kw"; + rev = "9e2d021fc6088a2027315d7e7ae8bafa94f16a7d"; + sha256 = "0qfpq71hmhgjcy2l056jm4l9gz9hypv0c1kcm1ainwyhq0bkwr77"; }; meta.homepage = "https://github.com/vim-airline/vim-airline/"; }; @@ -8887,12 +8947,12 @@ final: prev: vim-anzu = buildVimPluginFrom2Nix { pname = "vim-anzu"; - version = "2022-11-08"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "osyo-manga"; repo = "vim-anzu"; - rev = "727da5e402d4f96127afafa4d8d2bf222f9c99f6"; - sha256 = "0i5pg88rl54dhwk8ldiqg7dkgz441xq2z9yc1v942s7kwlha609v"; + rev = "e0a61e479bc86323fb66bf75e4e36f6924cee4ce"; + sha256 = "0fba3918ik69cndpp9wb46aim6phdc9vwwk4i5f8w5wwv2baqb5w"; }; meta.homepage = "https://github.com/osyo-manga/vim-anzu/"; }; @@ -9223,12 +9283,12 @@ final: prev: vim-clap = buildVimPluginFrom2Nix { pname = "vim-clap"; - version = "2022-12-03"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-clap"; - rev = "ea90c8cf804feea294bae47423a15b733a74b5b7"; - sha256 = "1v6f5ra84sdhrsbqp5vjyhlcjxnykmasbghni600l6ygzlgd2saq"; + rev = "15ba008e15a05f90dfec0b4a59124fccb3e8ffc1"; + sha256 = "167kmgd8793nhan0hpwyvi1z0jzfgrvhgdzbf8clzswxg7wvq773"; }; meta.homepage = "https://github.com/liuchengxu/vim-clap/"; }; @@ -9283,12 +9343,12 @@ final: prev: vim-code-dark = buildVimPluginFrom2Nix { pname = "vim-code-dark"; - version = "2022-10-13"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "tomasiser"; repo = "vim-code-dark"; - rev = "f002d6d256a11c14a9de40c45a8ecb75b2292f8a"; - sha256 = "1f5v7msmdkpsgg7yhcg2b4ysfg97w2hhrwqbahq64j3y616426ir"; + rev = "48d44707a821f962f56c3d0553144c77211749fa"; + sha256 = "0pgrmcq79jbj68zw1s9wfa5lq133xn34gx3zd2r1dllp2ybqf62a"; }; meta.homepage = "https://github.com/tomasiser/vim-code-dark/"; }; @@ -9391,12 +9451,12 @@ final: prev: vim-cool = buildVimPluginFrom2Nix { pname = "vim-cool"; - version = "2022-11-29"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "romainl"; repo = "vim-cool"; - rev = "471b72095378cbe14f51bc5d9f679e97c541a498"; - sha256 = "0bn323gb56kra3ciq56lidmhlnx3gbhhjajg6kjap5qqz0mp2ncq"; + rev = "80c19445728d70595c2f72d0436527e28292ebd9"; + sha256 = "1imhhsf5rhj13gchddfkgadn5z5i96gnw822nmx0ddcdvrm6kisf"; }; meta.homepage = "https://github.com/romainl/vim-cool/"; }; @@ -9487,12 +9547,12 @@ final: prev: vim-dadbod = buildVimPluginFrom2Nix { pname = "vim-dadbod"; - version = "2022-12-08"; + version = "2022-12-13"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-dadbod"; - rev = "34151ccce9f5ff16229b8e482a97e46997914cb3"; - sha256 = "09lia66yimk8h9y1bj50ar45c9r13k92jw009nxp1kfkb9nsk83y"; + rev = "70f86045e3a70ccdc9b448a9fe66a550290adca3"; + sha256 = "053cy6vmsvjrhjrgmnhg1s2cvxap3dyfniy9r8phd56isvlqd2i1"; }; meta.homepage = "https://github.com/tpope/vim-dadbod/"; }; @@ -10111,12 +10171,12 @@ final: prev: vim-gitgutter = buildVimPluginFrom2Nix { pname = "vim-gitgutter"; - version = "2022-10-22"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "airblade"; repo = "vim-gitgutter"; - rev = "400a12081f188f3fb639f8f962456764f39c6ff1"; - sha256 = "1rfg2wniappm64y5b6j6nmqsp41axgs6f3ghdzcjgak71b6mbng9"; + rev = "00df1089b6267f47c7c0f13536789feb9db1e65b"; + sha256 = "1qj22fhkhamva23jn1f1044vj01p3n4203zdhqasn8836jpw0f82"; }; meta.homepage = "https://github.com/airblade/vim-gitgutter/"; }; @@ -10159,12 +10219,12 @@ final: prev: vim-go = buildVimPluginFrom2Nix { pname = "vim-go"; - version = "2022-12-01"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "fatih"; repo = "vim-go"; - rev = "8d7677947e0be1eecfa1bcf2c1148804963ec4f6"; - sha256 = "1f2xklijsxbc7f2y26ps6bwyhn5sxbmv8gwy66l7yhfbc0zvic0w"; + rev = "8c4db1c61432511a3aa55971dabb2171cbcba7b1"; + sha256 = "1qzri85vzz706h5wq8n0h7xi610vfm1cykwgrkwannwarj9khnx6"; }; meta.homepage = "https://github.com/fatih/vim-go/"; }; @@ -10893,12 +10953,12 @@ final: prev: vim-lsp = buildVimPluginFrom2Nix { pname = "vim-lsp"; - version = "2022-12-03"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "prabirshrestha"; repo = "vim-lsp"; - rev = "0a8d2dfaedf1e51859317f675cefe8403041e76a"; - sha256 = "03yipczl11q76db7s1a11nmn3k6rw066y4x5jzracfny9f63miw3"; + rev = "2cb7ef587cd2c79dd98a7cd3ff301cc415296629"; + sha256 = "10krhi7cq6ijlpascsjjxwg4abfqg3kis4p8cm0lwaj7sgk5h5sv"; }; meta.homepage = "https://github.com/prabirshrestha/vim-lsp/"; }; @@ -12659,12 +12719,12 @@ final: prev: vim-tpipeline = buildVimPluginFrom2Nix { pname = "vim-tpipeline"; - version = "2022-11-24"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "vimpostor"; repo = "vim-tpipeline"; - rev = "776026d7311001495095f0b49dd2f0ebf33c3604"; - sha256 = "0zj65mm4fn5acknxr1y85lmjik3i6k67w4yj4frxd61nsfk32sqv"; + rev = "b4aefd5a1e697ea68d50df2f7b222036a7251df8"; + sha256 = "147mv6zn5b8my8a8w7ddk1g1wzj0xsdssb265j19vs8ajijg7bcy"; }; meta.homepage = "https://github.com/vimpostor/vim-tpipeline/"; }; @@ -12839,12 +12899,12 @@ final: prev: vim-vsnip = buildVimPluginFrom2Nix { pname = "vim-vsnip"; - version = "2022-11-30"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "vim-vsnip"; - rev = "e44026b5394fd79aa0f2118aaf41627ef9c354ee"; - sha256 = "1a14msxri37xs29xq80fw9mh6g9ipmc9g4ik2p0x9r5h2pz2nsbq"; + rev = "8dde8c0ef10bb1afdbb301e2bd7eb1c153dd558e"; + sha256 = "09vxb458xglzrmxjahxabnqkrkb0cbl6sf9jplp01v0cy3jjfmmw"; }; meta.homepage = "https://github.com/hrsh7th/vim-vsnip/"; }; @@ -12971,12 +13031,12 @@ final: prev: vim-xkbswitch = buildVimPluginFrom2Nix { pname = "vim-xkbswitch"; - version = "2022-12-08"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "lyokha"; repo = "vim-xkbswitch"; - rev = "6bcc2dd50f8952e9d20760ccccd3425ecaa4b25e"; - sha256 = "09lh4cd2v8k0hj6ipik1lq78syl07aaf5aybpnf9l3gbvqbj5wnw"; + rev = "01e62dfd3f067318b2d4eb341801149b9ba6b34d"; + sha256 = "0xnbsw16xgsz5w026hhr7vz20sp7kd4yybbdni7clsw3xm6hywkf"; }; meta.homepage = "https://github.com/lyokha/vim-xkbswitch/"; }; @@ -13019,12 +13079,12 @@ final: prev: vim-zettel = buildVimPluginFrom2Nix { pname = "vim-zettel"; - version = "2022-12-15"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "michal-h21"; repo = "vim-zettel"; - rev = "9c6fe4cbb2a2d84300afadcc112318fbf7adad1f"; - sha256 = "0d3sv19d6karyxilpjfaab8lg37qbwx5arzr9daclky9762ipkf0"; + rev = "7bd110f8d370c1beb812b30af82336556fa44096"; + sha256 = "04r72b7vwbb5m7ik8lczknpl8qpfar3lhzj7plhzpq1sbqyj4kpm"; }; meta.homepage = "https://github.com/michal-h21/vim-zettel/"; }; @@ -13188,12 +13248,12 @@ final: prev: vimtex = buildVimPluginFrom2Nix { pname = "vimtex"; - version = "2022-12-06"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "7a887028e91b12268fe812028621152dba549b3c"; - sha256 = "0q6qf5572b6v4k4xnf5ra5brkpjclh8r34rrhpidc3xkdmgifyg4"; + rev = "265cb5b8e23e125713e3d331d2c89383ca72cc09"; + sha256 = "1yy6ps0896zcsr55p7z9k4vbh2n78bq5mps3r13kv3y7aj9m394i"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -13537,12 +13597,12 @@ final: prev: zk-nvim = buildVimPluginFrom2Nix { pname = "zk-nvim"; - version = "2022-12-04"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "mickael-menu"; repo = "zk-nvim"; - rev = "60478c653aa5fbeac3035b71f5800c5c7a2f5361"; - sha256 = "0jkmdr7db8rs3cv9xziy58sx4fikxjz1wyaag4g1r7l5mwsf9zrh"; + rev = "2fd9f9f29270bb28477e000100625276ec2a2377"; + sha256 = "1b8w280yivsb34547y7kdcsvgcil41sfj8kvyvs6d24yrxbqs20w"; }; meta.homepage = "https://github.com/mickael-menu/zk-nvim/"; }; @@ -13573,12 +13633,12 @@ final: prev: catppuccin-nvim = buildVimPluginFrom2Nix { pname = "catppuccin-nvim"; - version = "2022-12-14"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "catppuccin"; repo = "nvim"; - rev = "26e498db297607fe17a6206c5a28f0f4cb532954"; - sha256 = "0ixgg83kkr4r5mdkw1m44svkd31qdbvaliycrgasyhbw8k774m4x"; + rev = "55f43a952856bc0029e6cef066297c6cfab3451d"; + sha256 = "1y9k2hzykw7m227kihaf2cygbkirwqrha3m40k2807a66nrcjyk3"; }; meta.homepage = "https://github.com/catppuccin/nvim/"; }; @@ -13597,24 +13657,24 @@ final: prev: chad = buildVimPluginFrom2Nix { pname = "chad"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "chadtree"; - rev = "0cd715bd487f300320d963c6bb291fd2e5eacc3f"; - sha256 = "0vfs2c3q2kx28x5i089drvrmqfdn6n4031lip4zbpg1dsf9rf07i"; + rev = "113f946b40e38e169ac98b95737f1facdfb1067d"; + sha256 = "11c637v1ab47h1p67phdknhwiakidrjr5rn3mhhy2b2nnw6ybiqy"; }; meta.homepage = "https://github.com/ms-jpq/chadtree/"; }; dracula-vim = buildVimPluginFrom2Nix { pname = "dracula-vim"; - version = "2022-12-12"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "dracula"; repo = "vim"; - rev = "b7645942bf91154f76ca016b612131168522d19e"; - sha256 = "1x91l9dkmzkfj4dmzg2vm0qxkmr2ilmqql7c774jcwfhr90zd54x"; + rev = "eb577d47b0cfc9191bf04c414b4042d5f1a980f8"; + sha256 = "1zp55jg5prsvvq12y8c03arlwplgwwpr5hy14w9hhfmp2bix98lq"; }; meta.homepage = "https://github.com/dracula/vim/"; }; diff --git a/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix b/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix index e942ed63634ab..105519b8f3e25 100644 --- a/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix +++ b/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix @@ -3,6 +3,17 @@ { buildGrammar, fetchFromGitHub, fetchFromGitLab, fetchgit }: { + ada = buildGrammar { + language = "ada"; + version = "e9e2ec9"; + source = fetchFromGitHub { + owner = "briot"; + repo = "tree-sitter-ada"; + rev = "e9e2ec9d3b6302e9b455901bec00036e29d1c121"; + hash = "sha256-buTQ1GjaJSVy4SPikZq88bifWubyHtPSI4ac7p1/tOg="; + }; + meta.homepage = "https://github.com/briot/tree-sitter-ada"; + }; agda = buildGrammar { language = "agda"; version = "80ea622"; @@ -27,12 +38,12 @@ }; astro = buildGrammar { language = "astro"; - version = "947e930"; + version = "22697b0"; source = fetchFromGitHub { owner = "virchau13"; repo = "tree-sitter-astro"; - rev = "947e93089e60c66e681eba22283f4037841451e7"; - hash = "sha256-q1ni++SPbq5y+47fPb6TryMw86gpULwNcXwi5yjXCWI="; + rev = "22697b0e2413464b7abaea9269c5e83a59e39a83"; + hash = "sha256-vp2VjkfBEYEUwUCjBlbVjPIB49QIikdFAITzzFLZX+U="; }; meta.homepage = "https://github.com/virchau13/tree-sitter-astro"; }; @@ -104,12 +115,12 @@ }; c_sharp = buildGrammar { language = "c_sharp"; - version = "8e4ec08"; + version = "1bd772f"; source = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-c-sharp"; - rev = "8e4ec08f1dae1d72f082df0f7e1176772f553d47"; - hash = "sha256-BIqfaFFwco3aE65N9tRtawxFEXvaVwQvoMgM3cg10/k="; + rev = "1bd772f69b0db577122533514a239b184650adf2"; + hash = "sha256-ySgSavQflqFXHY25DjX16aP4KgK2HFdsQ6HeYaerxNI="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-c-sharp"; }; @@ -404,12 +415,12 @@ }; gdscript = buildGrammar { language = "gdscript"; - version = "2a6abda"; + version = "a8fa839"; source = fetchFromGitHub { owner = "PrestonKnopp"; repo = "tree-sitter-gdscript"; - rev = "2a6abdaa47fcb91397e09a97c7433fd995ea46c6"; - hash = "sha256-YDLPYwWHnwqj7CpgUKRXQYj2a6ZJUKc0bcalVSJ99Ew="; + rev = "a8fa839150d05baaf4d5a472520ee71e9b1d8b3c"; + hash = "sha256-uSpic8MKMvl1p7LOHNn5EJGp1iOYkeqcRt7skdROmBo="; }; meta.homepage = "https://github.com/PrestonKnopp/tree-sitter-gdscript"; }; @@ -593,12 +604,12 @@ }; help = buildGrammar { language = "help"; - version = "ce20f13"; + version = "61c7505"; source = fetchFromGitHub { owner = "neovim"; repo = "tree-sitter-vimdoc"; - rev = "ce20f13c3f12506185754888feaae3f2ad54c287"; - hash = "sha256-XklORrP4ToX4klXFYxMv2s63INWugDyjl3mtLDdUHlg="; + rev = "61c75058299f3d1cf565697e4073d7b2cc6a6d6c"; + hash = "sha256-MTossQzmBoHqXu933suYUUyDbmb20uO5oZlV31BYqIA="; }; meta.homepage = "https://github.com/neovim/tree-sitter-vimdoc"; }; @@ -736,23 +747,23 @@ }; jsonnet = buildGrammar { language = "jsonnet"; - version = "768a384"; + version = "505f5bd"; source = fetchFromGitHub { owner = "sourcegraph"; repo = "tree-sitter-jsonnet"; - rev = "768a384989391237c6d55ff3d878a0d1e0d2b4fa"; - hash = "sha256-kSG0YwtkzGVz8RIYBrE0ZyUMc6YTtQO8XvHHiwy5GL4="; + rev = "505f5bd90053ae895aa3d6f2bac8071dd9abd8b2"; + hash = "sha256-XZqywAzM+UCKto/OFn50hhRpEyFVLpFV7Q1Z0NKoPsI="; }; meta.homepage = "https://github.com/sourcegraph/tree-sitter-jsonnet"; }; julia = buildGrammar { language = "julia"; - version = "36b099e"; + version = "f254ff9"; source = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-julia"; - rev = "36b099e9ea577f64ba53323115028dadd2991d2c"; - hash = "sha256-sd6Ue7Ur6Juq2kZbuC/E/gK9JJPVG/5UTToQ+5hdTD0="; + rev = "f254ff9c52e994f629a60821662917d2c6c0e8eb"; + hash = "sha256-918mGh91hAl8hx4HoGOXr2BFoDtMz5yPkQRMDrkk1Mg="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-julia"; }; @@ -813,12 +824,12 @@ }; lua = buildGrammar { language = "lua"; - version = "f5e84ff"; + version = "0fc8996"; source = fetchFromGitHub { owner = "MunifTanjim"; repo = "tree-sitter-lua"; - rev = "f5e84ffc2b06858401e0d2edf5dce009efbe34b3"; - hash = "sha256-9ig+F2W6MB5uSS3XFUL2OCW9PKYkb4KPpGN2DWKEdhY="; + rev = "0fc89962b7ff5c7d676b8592c1cbce1ceaa806fd"; + hash = "sha256-MbNP1/NKdSkUTydmK819o8vMKUZFan1yE7d227xMsh4="; }; meta.homepage = "https://github.com/MunifTanjim/tree-sitter-lua"; }; @@ -1115,12 +1126,12 @@ }; query = buildGrammar { language = "query"; - version = "0695cd0"; + version = "0717de0"; source = fetchFromGitHub { owner = "nvim-treesitter"; repo = "tree-sitter-query"; - rev = "0695cd0760532de7b54f23c667d459b5d1332b44"; - hash = "sha256-DwhvOvUb3hNmZTTk5HkZ9X1DCWz+G3+YJ0l/PqLVDdU="; + rev = "0717de07078a20a8608c98ad5f26c208949d0e15"; + hash = "sha256-dWWof8rYFTto3A4BfbKTKcNieRbwFdF6xDXW9tQvAqQ="; }; meta.homepage = "https://github.com/nvim-treesitter/tree-sitter-query"; }; @@ -1291,12 +1302,12 @@ }; sql = buildGrammar { language = "sql"; - version = "8dc7fa0"; + version = "8635357"; source = fetchFromGitHub { owner = "derekstride"; repo = "tree-sitter-sql"; - rev = "8dc7fa0e51145f0312eedbb5aff9945bd967fb8f"; - hash = "sha256-L6mur9BnDzA1mgtsWdyMC52IY9sKwt/xDkfPv2VKPPs="; + rev = "8635357363f8b01931ce6abbe0c937aa73e47bf8"; + hash = "sha256-p3R8uGIHyzYnRnKYWpeqMAcuk1xjKlPvB5vllPqUvrs="; }; generate = true; meta.homepage = "https://github.com/derekstride/tree-sitter-sql"; @@ -1336,12 +1347,12 @@ }; swift = buildGrammar { language = "swift"; - version = "693411c"; + version = "f94e1d6"; source = fetchFromGitHub { owner = "alex-pinkus"; repo = "tree-sitter-swift"; - rev = "693411cb5a1167311ccd84708348281630562726"; - hash = "sha256-KNmRR2Od2uTOHiENeCXoTKAp2jvzSsEhzqf9WmiL3Vo="; + rev = "f94e1d6dd8f4df6c7c8aa07da625e498ebb27d09"; + hash = "sha256-DtcGcywpwCZoGNllZEetE+s1bwMNrRdooGdttAG3Ra0="; }; generate = true; meta.homepage = "https://github.com/alex-pinkus/tree-sitter-swift"; @@ -1357,6 +1368,16 @@ }; meta.homepage = "https://github.com/RaafatTurki/tree-sitter-sxhkdrc"; }; + t32 = buildGrammar { + language = "t32"; + version = "f8106fc"; + source = fetchgit { + url = "https://codeberg.org/xasc/tree-sitter-t32"; + rev = "f8106fcf5a27f905b3d9d55d9cd3e910bea70c60"; + hash = "sha256-hKddSekx67Yqm4+LqVaH8Sf1+73RlCnXE6th2FTHB34="; + }; + meta.homepage = "https://codeberg.org/xasc/tree-sitter-t32"; + }; teal = buildGrammar { language = "teal"; version = "1ae8c68"; @@ -1461,12 +1482,12 @@ }; v = buildGrammar { language = "v"; - version = "66b92a8"; + version = "f0aa56e"; source = fetchFromGitHub { owner = "vlang"; repo = "vls"; - rev = "66b92a89ef1e149300df79c0b2a934ad959c8eec"; - hash = "sha256-R6Irz3sdyzKH1qWOUwUYK1OKhYs0PUYS/azYn/nb6jk="; + rev = "f0aa56eec7689f08a389c90ad8d3e5e0d18b3cd7"; + hash = "sha256-d69SvXDWxeRk2hvou8MhXUpUrSBwYENqFDGpT/Y5UpM="; }; location = "tree_sitter_v"; meta.homepage = "https://github.com/vlang/vls"; diff --git a/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py b/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py index 580c1aa22dab7..a780633112674 100755 --- a/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py +++ b/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py @@ -71,7 +71,7 @@ def generate_grammar(item): repo = "{repo}";""" case _: - cmd += ["fetchgit", "url"] + cmd += ["fetchgit", "--url", url] generated += f"""fetchgit {{ url = "{url}";""" diff --git a/pkgs/applications/editors/vim/plugins/overrides.nix b/pkgs/applications/editors/vim/plugins/overrides.nix index 6dc04fee00507..849c152fbaf0d 100644 --- a/pkgs/applications/editors/vim/plugins/overrides.nix +++ b/pkgs/applications/editors/vim/plugins/overrides.nix @@ -123,6 +123,10 @@ self: super: { }; }); + ChatGPT-nvim = super.ChatGPT-nvim.overrideAttrs (old: { + dependencies = with self; [ nui-nvim plenary-nvim telescope-nvim ]; + }); + clang_complete = super.clang_complete.overrideAttrs (old: { # In addition to the arguments you pass to your compiler, you also need to # specify the path of the C++ std header (if you are using C++). @@ -1147,6 +1151,8 @@ self: super: { pname = "vim-markdown-composer-bin"; inherit (super.vim-markdown-composer) src version; cargoSha256 = "sha256-Vie8vLTplhaVU4E9IohvxERfz3eBpd62m8/1Ukzk8e4="; + # tests require network access + doCheck = false; }; in super.vim-markdown-composer.overrideAttrs (old: { diff --git a/pkgs/applications/editors/vim/plugins/vim-plugin-names b/pkgs/applications/editors/vim/plugins/vim-plugin-names index dff2ab29a7f43..de1e008f3895d 100644 --- a/pkgs/applications/editors/vim/plugins/vim-plugin-names +++ b/pkgs/applications/editors/vim/plugins/vim-plugin-names @@ -1,6 +1,7 @@ repo,branch,alias https://github.com/euclidianAce/BetterLua.vim/,, https://github.com/vim-scripts/BufOnly.vim/,, +https://github.com/jackMort/ChatGPT.nvim/,HEAD, https://github.com/chrisbra/CheckAttach/,, https://github.com/vim-scripts/Colour-Sampler-Pack/,, https://github.com/whonore/Coqtail/,, @@ -42,6 +43,7 @@ https://github.com/eikenb/acp/,, https://github.com/stevearc/aerial.nvim/,, https://github.com/Numkil/ag.nvim/,, https://github.com/derekelkins/agda-vim/,, +https://github.com/aduros/ai.vim/,HEAD, https://github.com/slashmili/alchemist.vim/,, https://github.com/dense-analysis/ale/,, https://github.com/vim-scripts/align/,, @@ -240,6 +242,7 @@ https://github.com/lambdalisue/fern.vim/,, https://github.com/wincent/ferret/,, https://github.com/j-hui/fidget.nvim/,, https://github.com/bogado/file-line/,, +https://github.com/glacambre/firenvim/,HEAD, https://github.com/andviro/flake8-vim/,, https://github.com/ggandor/flit.nvim/,HEAD, https://github.com/ncm2/float-preview.nvim/,, @@ -274,6 +277,7 @@ https://github.com/lewis6991/gitsigns.nvim/,, https://github.com/gregsexton/gitv/,, https://github.com/gleam-lang/gleam.vim/,, https://github.com/ellisonleao/glow.nvim/,, +https://github.com/p00f/godbolt.nvim/,HEAD, https://github.com/roman/golden-ratio/,, https://github.com/buoto/gotests-vim/,, https://github.com/rmagatti/goto-preview/,, @@ -335,6 +339,7 @@ https://github.com/qnighy/lalrpop.vim/,, https://github.com/sk1418/last256/,, https://github.com/latex-box-team/latex-box/,, https://github.com/dundalek/lazy-lsp.nvim/,HEAD, +https://github.com/folke/lazy.nvim/,HEAD, https://github.com/kdheepak/lazygit.nvim/,, https://github.com/Julian/lean.nvim/,, https://github.com/leanprover/lean.vim/,, diff --git a/pkgs/applications/editors/vim/plugins/vim-utils.nix b/pkgs/applications/editors/vim/plugins/vim-utils.nix index 6607ff2b8c433..4235aa5e929e0 100644 --- a/pkgs/applications/editors/vim/plugins/vim-utils.nix +++ b/pkgs/applications/editors/vim/plugins/vim-utils.nix @@ -391,8 +391,7 @@ rec { } ./neovim-require-check-hook.sh) {}; inherit (import ./build-vim-plugin.nix { - inherit lib stdenv rtpPath vim vimGenDocHook - toVimPlugin vimCommandCheckHook neovimRequireCheckHook; + inherit lib stdenv rtpPath toVimPlugin; }) buildVimPlugin buildVimPluginFrom2Nix; diff --git a/pkgs/applications/editors/vscode/extensions/default.nix b/pkgs/applications/editors/vscode/extensions/default.nix index 06c1467d94a22..4ef8375c32c43 100644 --- a/pkgs/applications/editors/vscode/extensions/default.nix +++ b/pkgs/applications/editors/vscode/extensions/default.nix @@ -1483,8 +1483,8 @@ let mktplcRef = { name = "latex-workshop"; publisher = "James-Yu"; - version = "9.1.1"; - sha256 = "sha256-Xt/z5r9R090Z9nP1v7k+jYm9EOcjy0GfYiYpc7jNid4="; + version = "9.2.0"; + sha256 = "sha256-AAADJkMXsKvpEHBH8+TNM0x3CGEGVtf/b+tce297rkw="; }; meta = with lib; { changelog = "https://marketplace.visualstudio.com/items/James-Yu.latex-workshop/changelog"; diff --git a/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix b/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix index ae9cbb7fb095d..ee2f8dbec9a62 100644 --- a/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix +++ b/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix @@ -9,28 +9,69 @@ let inherit (vscode-utils) buildVscodeMarketplaceExtension; - # patch runs on remote machine hence use of which - # links to local node if version is 12 + nodeVersion = "16"; + + # As VS Code executes this code on the remote machine + # we test to see if we can build Node from Nixpkgs + # otherwise we check if the globally installed Node + # is usable. patch = '' - f="$HOME/.vscode-server/bin/$COMMIT_ID/node" - localNodePath=''$(which node) - if [ -x "''$localNodePath" ]; then - localNodeVersion=''$(node -v) - if [ "\''${localNodeVersion:1:2}" = "12" ]; then - echo PATCH: replacing ''$f with ''$localNodePath - rm ''$f - ln -s ''$localNodePath ''$f + # Use Node from nixpkgs for NixOS hosts + # + + serverDir="$HOME/.vscode-server/bin/$COMMIT_ID" + serverNode="$serverDir/node" + echo "VS Code Node: $serverNode" + + # Check if VS Code Server has a non-working Node or the wrong version of Node + if ! nodeVersion=$($serverNode -v) || [ "\''${nodeVersion:1:2}" != "${nodeVersion}" ]; then + echo "VS Code Node Version: $nodeVersion" + + if nix-build "<nixpkgs>" -A nodejs-${nodeVersion}_x --out-link "$serverDir/nix" && [ -e "$serverDir/nix/bin/node" ]; then + nodePath="$serverDir/nix/bin/node" + fi + + echo "Node from Nix: $nodePath" + + nodeVersion=$($nodePath -v) + echo "Node from Nix Version: $nodeVersion" + + if [ "\''${nodeVersion:1:2}" != "${nodeVersion}" ]; then + echo "Getting Node from Nix failed, use Local Node instead" + nodePath=$(which node) + echo "Local Node: $nodePath" + nodeVersion=$($nodePath -v) + echo "Local Node Version: $nodeVersion" fi + + if [ "\''${nodeVersion:1:2}" == "${nodeVersion}" ]; then + echo PATCH: replacing $serverNode with $nodePath + ln -sf $nodePath $serverNode + fi + fi + + nodeVersion=$($serverNode -v) + echo "VS Code Node Version: $nodeVersion" + + if [ "\''${nodeVersion:1:2}" != "${nodeVersion}" ]; then + echo "Unsupported VS Code Node version: $nodeVersion", quitting + fail_with_exitcode ''${o.InstallExitCode.ServerTransferFailed} fi + ${lib.optionalString useLocalExtensions '' # Use local extensions if [ -d $HOME/.vscode/extensions ]; then - if ! test -L "$HOME/.vscode-server/extensions"; then - mkdir -p $HOME/.vscode-server - ln -s $HOME/.vscode/extensions $HOME/.vscode-server/ + if [ -e $HOME/.vscode-server/extensions ]; then + mv $HOME/.vscode-server/extensions $HOME/.vscode-server/extensions.bak fi + + mkdir -p $HOME/.vscode-server + ln -s $HOME/.vscode/extensions $HOME/.vscode-server/extensions fi ''} + + # + # Start the server ''; in buildVscodeMarketplaceExtension { @@ -43,7 +84,7 @@ buildVscodeMarketplaceExtension { postPatch = '' substituteInPlace "out/extension.js" \ - --replace "# install extensions" '${patch}' + --replace '# Start the server\n' '${patch}' ''; meta = with lib; { diff --git a/pkgs/applications/editors/vscode/generic.nix b/pkgs/applications/editors/vscode/generic.nix index 59910c89428b8..a87097547d325 100644 --- a/pkgs/applications/editors/vscode/generic.nix +++ b/pkgs/applications/editors/vscode/generic.nix @@ -1,7 +1,7 @@ { stdenv, lib, makeDesktopItem , unzip, libsecret, libXScrnSaver, libxshmfence, wrapGAppsHook, makeWrapper , atomEnv, at-spi2-atk, autoPatchelfHook -, systemd, fontconfig, libdbusmenu, glib, buildFHSUserEnvBubblewrap +, systemd, fontconfig, libdbusmenu, glib, buildFHSUserEnvBubblewrap, wayland # Populate passthru.tests , tests @@ -66,7 +66,7 @@ let buildInputs = [ libsecret libXScrnSaver libxshmfence ] ++ lib.optionals (!stdenv.isDarwin) ([ at-spi2-atk ] ++ atomEnv.packages); - runtimeDependencies = lib.optionals stdenv.isLinux [ (lib.getLib systemd) fontconfig.lib libdbusmenu ]; + runtimeDependencies = lib.optionals stdenv.isLinux [ (lib.getLib systemd) fontconfig.lib libdbusmenu wayland ]; nativeBuildInputs = [ unzip ] ++ lib.optionals stdenv.isLinux [ diff --git a/pkgs/applications/editors/vscode/vscode.nix b/pkgs/applications/editors/vscode/vscode.nix index 1e1db2ea8937e..16f723020d8ac 100644 --- a/pkgs/applications/editors/vscode/vscode.nix +++ b/pkgs/applications/editors/vscode/vscode.nix @@ -18,17 +18,17 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "0f5l720gc47dygbk7mahx7pb088a8bfrnf69j3igvczbnfapx5sy"; - x86_64-darwin = "0qmji8bfnqvrxv4yk3rscvns1hk5wfwwdng8jblh5bilf657g1fc"; - aarch64-linux = "0qcmcsb97q303izhw8k4242nsb72my1vnf24hsfml4vr76f5qqbd"; - aarch64-darwin = "1cc8p5s8vr5bml715yx2lzkqa9q85rziswrhl1d11zagymvswjzn"; - armv7l-linux = "086c3wazjk30f8r8dgi0bjsvzcc6sa9d80cy4500pim7rb7s6ppn"; + x86_64-linux = "0xdj5v2n34d6p49ng13qr9d4yyyvqr96qv15la2fda9s7n1s659c"; + x86_64-darwin = "0jgrf534qy39nki0rfc8lrdbdb8ghzarckd3cx9fzq6bw1p2jy1f"; + aarch64-linux = "133577j6i709dq4ircnh2yklylcmy0kgs6lhly7mx8nrag8qi9c1"; + aarch64-darwin = "18346igq8b1d0kywy9alvzm0glb46aalznnhr5mql5rhaana92xw"; + armv7l-linux = "0l0wvgi981ryqbhyh5qalr8lasyf3pg4pzqs9f9hc75ppk4d6sny"; }.${system} or throwSystem; in callPackage ./generic.nix rec { # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.74.1"; + version = "1.74.2"; pname = "vscode"; executableName = "code" + lib.optionalString isInsiders "-insiders"; diff --git a/pkgs/applications/editors/vscode/vscodium.nix b/pkgs/applications/editors/vscode/vscodium.nix index 19d656461471b..a9e14f0bfccb0 100644 --- a/pkgs/applications/editors/vscode/vscodium.nix +++ b/pkgs/applications/editors/vscode/vscodium.nix @@ -15,11 +15,11 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "07njvkgashg9mbkdf7cw40xdxh08qs8gbgh24gdznvs397bvk2jk"; - x86_64-darwin = "155f7rbyb413igvxddrrad0y1s7i9rfldm6d9fvbyz6p8nzyqfvh"; - aarch64-linux = "08wz44js381hjlnpssd09i2xz9min603n7a5v3x2sah4z9vi220d"; - aarch64-darwin = "0ikw0kcbvjwn6b0ac5zfp0shavay31yfhn000xrw9il3py741x7k"; - armv7l-linux = "1pvybhaf96ayjl832vz9c0y2m07mb5a16c2hr13l0vw52sbl30md"; + x86_64-linux = "0xbwx218dzf9nyjf531sb9ij0p8lz08yi09yz8dms07qcsfirac0"; + x86_64-darwin = "028i7cbh43ivz5amx015v0d87kh4jj54b3ndirxl57py2gxszy0x"; + aarch64-linux = "1rg67sfp3abpcxrl89db6x3a41la63xinl4kjin8v08w5iprrm0n"; + aarch64-darwin = "0zm057rvabd29ay88l0h40adrc71p9cjvml34aci58klaqd2if0q"; + armv7l-linux = "0amxgq98gifcjr9wfx8ddcjqkb1b6pr5q3dwfdbyynksqqd4hrxv"; }.${system} or throwSystem; sourceRoot = if stdenv.isDarwin then "" else "."; @@ -29,7 +29,7 @@ in # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.74.1.22349"; + version = "1.74.2.22355"; pname = "vscodium"; executableName = "codium"; diff --git a/pkgs/applications/editors/yi/wrapper.nix b/pkgs/applications/editors/yi/wrapper.nix index a7456590ab811..356a04b36e96a 100644 --- a/pkgs/applications/editors/yi/wrapper.nix +++ b/pkgs/applications/editors/yi/wrapper.nix @@ -28,6 +28,10 @@ stdenv.mkDerivation { # This wrapper and wrapper only is under PD license = licenses.publicDomain; maintainers = with maintainers; [ ]; + + # dependency yi-language no longer builds + hydraPlatforms = lib.platforms.none; + broken = true; }; } diff --git a/pkgs/applications/emulators/cemu/default.nix b/pkgs/applications/emulators/cemu/default.nix index d2c325280e065..e5c305ef39bfa 100644 --- a/pkgs/applications/emulators/cemu/default.nix +++ b/pkgs/applications/emulators/cemu/default.nix @@ -20,21 +20,24 @@ , pugixml , rapidjson , vulkan-headers +, wayland , wxGTK32 , zarchive , vulkan-loader + +, nix-update-script }: stdenv.mkDerivation rec { pname = "cemu"; - version = "2.0-17"; + version = "2.0-22"; src = fetchFromGitHub { owner = "cemu-project"; repo = "Cemu"; rev = "v${version}"; - hash = "sha256-ryFph55o7s3eiqQ8kx5+3Et5S2U9H5i3fmZTc1CaCnA="; + hash = "sha256-ZQfJHQnT5mV6GC3dO6QV1fGsnyZMYqXiVdBSsimL5yU="; }; patches = [ @@ -68,6 +71,7 @@ stdenv.mkDerivation rec { pugixml rapidjson vulkan-headers + wayland wxGTK32 zarchive ]; @@ -108,13 +112,13 @@ stdenv.mkDerivation rec { in '' gappsWrapperArgs+=( --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath libs}" - - # Force X11 to be used until Wayland is natively supported - # <https://github.com/cemu-project/Cemu/pull/143> - --set GDK_BACKEND x11 ) ''; + passthru.updateScript = nix-update-script { + attrPath = pname; + }; + meta = with lib; { description = "Cemu is a Wii U emulator"; homepage = "https://cemu.info"; diff --git a/pkgs/applications/emulators/ppsspp/default.nix b/pkgs/applications/emulators/ppsspp/default.nix index 2d1f583d74192..1d3e0bb126e81 100644 --- a/pkgs/applications/emulators/ppsspp/default.nix +++ b/pkgs/applications/emulators/ppsspp/default.nix @@ -38,14 +38,14 @@ in + lib.optionalString enableQt "-qt" + lib.optionalString (!enableQt) "-sdl" + lib.optionalString forceWayland "-wayland"; - version = "1.13.2"; + version = "1.14.1"; src = fetchFromGitHub { owner = "hrydgard"; repo = "ppsspp"; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - sha256 = "sha256-Ubbl2KCZ4QlWDtTxl4my0nKNGY25DOkD/iEurzVx4gU="; + sha256 = "sha256-WGTPd3xcFk4E/Wf+DEv4pzGYf0dppzV3vUTwrYmZ2YM="; }; postPatch = '' diff --git a/pkgs/applications/emulators/retroarch/cores.nix b/pkgs/applications/emulators/retroarch/cores.nix index 1bcd1d8c5fd7b..c72ff4929b22e 100644 --- a/pkgs/applications/emulators/retroarch/cores.nix +++ b/pkgs/applications/emulators/retroarch/cores.nix @@ -49,7 +49,7 @@ let mkLibretroCore = { core , src ? (getCoreSrc core) - , version ? "unstable-2022-11-21" + , version ? "unstable-2022-12-20" , ... }@args: import ./mkLibretroCore.nix ({ diff --git a/pkgs/applications/emulators/retroarch/default.nix b/pkgs/applications/emulators/retroarch/default.nix index 5512fa276e825..5c18d47daa8a5 100644 --- a/pkgs/applications/emulators/retroarch/default.nix +++ b/pkgs/applications/emulators/retroarch/default.nix @@ -2,12 +2,15 @@ , stdenv , nixosTests , enableNvidiaCgToolkit ? false +, withAssets ? false +, withCoreInfo ? false , withGamemode ? stdenv.isLinux , withVulkan ? stdenv.isLinux , withWayland ? stdenv.isLinux , alsa-lib , dbus , fetchFromGitHub +, fetchpatch , ffmpeg_4 , flac , freetype @@ -25,11 +28,12 @@ , libxml2 , libXxf86vm , makeWrapper -, mbedtls +, mbedtls_2 , mesa , nvidia_cg_toolkit , pkg-config , python3 +, retroarch-assets , SDL2 , substituteAll , udev @@ -55,9 +59,15 @@ stdenv.mkDerivation rec { }; patches = [ - (substituteAll { - src = ./use-fixed-path-for-libretro_core_info.patch; - libretro_info_path = libretro-core-info; + ./use-default-values-for-libretro_info_path-assets_directory.patch + # TODO: remove those two patches in the next RetroArch release + (fetchpatch { + url = "https://github.com/libretro/RetroArch/commit/894c44c5ea7f1eada9207be3c29e8d5c0a7a9e1f.patch"; + hash = "sha256-ThB6jd9pmsipT8zjehz7znK/s0ofHHCJeEYBKur6sO8="; + }) + (fetchpatch { + url = "https://github.com/libretro/RetroArch/commit/c5bfd52159cf97312bb28fc42203c39418d1bbbd.patch"; + hash = "sha256-rb1maAvCSUgq2VtJ67iqUY+Fz00Fchl8YGG0EPm0+F0="; }) ]; @@ -72,7 +82,7 @@ stdenv.mkDerivation rec { libGL libGLU libxml2 - mbedtls + mbedtls_2 python3 SDL2 zlib @@ -100,9 +110,18 @@ stdenv.mkDerivation rec { configureFlags = [ "--disable-update_cores" "--disable-builtinmbedtls" + "--enable-systemmbedtls" "--disable-builtinzlib" "--disable-builtinflac" ] ++ + lib.optionals withAssets [ + "--disable-update_assets" + "--with-assets_dir=${retroarch-assets}/share" + ] ++ + lib.optionals withCoreInfo [ + "--disable-update_core_info" + "--with-core_info_dir=${libretro-core-info}/share" + ] ++ lib.optionals stdenv.isLinux [ "--enable-dbus" "--enable-egl" @@ -112,9 +131,16 @@ stdenv.mkDerivation rec { postInstall = lib.optionalString (runtimeLibs != [ ]) '' wrapProgram $out/bin/retroarch \ --prefix LD_LIBRARY_PATH ':' ${lib.makeLibraryPath runtimeLibs} + '' + + lib.optionalString enableNvidiaCgToolkit '' + wrapProgram $out/bin/retroarch-cg2glsl \ + --prefix PATH ':' ${lib.makeBinPath [ nvidia_cg_toolkit ]} ''; - preFixup = "rm $out/bin/retroarch-cg2glsl"; + preFixup = lib.optionalString (!enableNvidiaCgToolkit) '' + rm $out/bin/retroarch-cg2glsl + rm $out/share/man/man6/retroarch-cg2glsl.6* + ''; passthru.tests = nixosTests.retroarch; diff --git a/pkgs/applications/emulators/retroarch/hashes.json b/pkgs/applications/emulators/retroarch/hashes.json index 6d9ae4da539c6..e4198184edc2f 100644 --- a/pkgs/applications/emulators/retroarch/hashes.json +++ b/pkgs/applications/emulators/retroarch/hashes.json @@ -14,8 +14,8 @@ "beetle-lynx": { "owner": "libretro", "repo": "beetle-lynx-libretro", - "rev": "3d2fcc5a555bea748b76f92a082c40227dff8222", - "sha256": "PpFLi9DIvv8igtAqDPkLfH1CjkbeOumcpNCP7K9C1PY=" + "rev": "9c48124dc15604b3eb6892e3616dfb77992a6fd6", + "sha256": "ZXFU4QmjVQVU5bE5TVmGm4gepZpuoS8+p60l+Ha4I9s=" }, "beetle-ngp": { "owner": "libretro", @@ -26,26 +26,26 @@ "beetle-pce-fast": { "owner": "libretro", "repo": "beetle-pce-fast-libretro", - "rev": "cc248db4d2f47d0f255fbc1a3c651df4beb3d835", - "sha256": "euoNldhyEPfC9EgEX201mpSjns2qbCIAow0zmMKTnaE=" + "rev": "d4fa4480f17f067c3aba25380717a5aee059f026", + "sha256": "t7OJuqEWec3GvNq9dsmrRhgz+GybBzt1ZO6FwZ9L5yE=" }, "beetle-pcfx": { "owner": "libretro", "repo": "beetle-pcfx-libretro", - "rev": "08632fcbc039f70dbd6da5810db9dcc304d7fbde", - "sha256": "G+OUs6k8dwH4BK+0X/g47wbY7Dpb3lT5TslLwPWq6g4=" + "rev": "af16dfd8353ed6cf76ef381b98a6a9abf59051ec", + "sha256": "snAA5PCU2NRsCiQtBRYEzczPSGG9OT2jDTrGaPZqhic=" }, "beetle-psx": { "owner": "libretro", "repo": "beetle-psx-libretro", - "rev": "798fab9d5bc82dde26442d9b4861d377d4689e31", - "sha256": "wHCUSMdPbIudmNm4XXW/zH6TDz7x9DrMNV/L8H3aO/w=" + "rev": "3827fb4bd0d36f0db7b59e0c220524c7daaf0430", + "sha256": "CGNzb6XDPsp+EitkgyvDha9DoZSy+e9JWye0nmCiOns=" }, "beetle-saturn": { "owner": "libretro", "repo": "beetle-saturn-libretro", - "rev": "054862a4ccb9b2f1bad9e5b075fc3d1116dc8055", - "sha256": "oL9YPvDGkUs0Tm/rNznnV+Tg5mcvqs1VcGVmz/fDHmw=" + "rev": "19ce186783174b93b90845c3f0e1fa1694904912", + "sha256": "mEuv9lrDi/q2ASV9hxYptievupcv4PfUWPYlDcNzXQg=" }, "beetle-snes": { "owner": "libretro", @@ -56,26 +56,26 @@ "beetle-supafaust": { "owner": "libretro", "repo": "supafaust", - "rev": "85b5527231a6ad6f9475c15c8ff1b9d16884cd30", - "sha256": "6ynxRfGYlp7Fuq3XT2uHsR9Uwu7WMIYjclLc0Pf/qNM=" + "rev": "75c658cce454e58ae04ea252f53a31c60d61548e", + "sha256": "2fXarVfb5/SYXF8t25/fGNFvODpGas5Bi0hLIbXgB+0=" }, "beetle-supergrafx": { "owner": "libretro", "repo": "beetle-supergrafx-libretro", - "rev": "3cfafe8c684a2f4f4532bcf18e25d2f8760ca45d", - "sha256": "hIBUMpXgX5zPi/W1vAhkuxprGfZQ/K5ZrtiswV36EMQ=" + "rev": "787772dff157c8fe54b2e16bb770f2c344c8932b", + "sha256": "i4SnjIqA0U88FnaT7fz5fqMyp8FyfNvxxhflOaAv1mA=" }, "beetle-vb": { "owner": "libretro", "repo": "beetle-vb-libretro", - "rev": "162918f06d9a705330b2ba128e0d3b65fd1a1bcc", - "sha256": "BtrdDob+B5g8Lq93LUhF7E0uWFUIMZneWFgH0VcsgPE=" + "rev": "3e845666d7ce235a071eb306e94074f1a72633bf", + "sha256": "ukKzG+O2o6EAF0l7cmMQOkemJ1oweIpRH5rle1gqaFk=" }, "beetle-wswan": { "owner": "libretro", "repo": "beetle-wswan-libretro", - "rev": "16d96f64a32cbe1fa89c40b142298dbd007f2f4d", - "sha256": "LBtOQfVvP70OB6qMnFXtWdJUu7CkkMfSQ0iPGhe7xeI=" + "rev": "cccee4217e53e164fd70196e56dfb24b967e5fd8", + "sha256": "RpGYQwDWkfYY0qnrTuAMzVuOSfTX5AZph7FD8ijUggc=" }, "blastem": { "owner": "libretro", @@ -92,8 +92,8 @@ "bsnes": { "owner": "libretro", "repo": "bsnes-libretro", - "rev": "7679cb9618c37c9044158d5cf3da28ef25afa9af", - "sha256": "9ozzXvCAuafcZn9iq91tTq16e2mlYqjwauJUGSbFd+k=" + "rev": "dabf6679024124b2f819c79f279dbb85a5263255", + "sha256": "iv8gxC48i8JMzby3vR4eYDViqCwSf8JGlPekQE6AF4c=" }, "bsnes-hd": { "owner": "DerKoun", @@ -110,8 +110,8 @@ "citra": { "owner": "libretro", "repo": "citra", - "rev": "70bf7d8a63b0b501e8f5cff89a86a3e2d4083aa0", - "sha256": "uHWROH6/ZAZygkhEQGNyllncCp2XDCdYwy/CKgGKAcM=", + "rev": "f0b09a5c0cb3767d43f5f8ca12a783012298fd44", + "sha256": "v86R5TLmNNMhuTMCwU3mAAtLK5H0sP//soh4x+cFgTQ=", "fetchSubmodules": true }, "desmume": { @@ -129,8 +129,8 @@ "dolphin": { "owner": "libretro", "repo": "dolphin", - "rev": "a8188dbc4e63d6c0867ed2196f5125130955f012", - "sha256": "gf9OjeDazDPDnQ9S2+hV4CNxPAkCCaEhJDZF97a1//U=" + "rev": "2f4b0f7902257d40a054f60b2c670d6e314f2a04", + "sha256": "9WYWbLehExYbPmGJpguhVFXqFJ9aR6VxzFVChd4QOEg=" }, "dosbox": { "owner": "libretro", @@ -153,8 +153,8 @@ "fbneo": { "owner": "libretro", "repo": "fbneo", - "rev": "a12455af75e60765da134b83051700e0fbe3803a", - "sha256": "ujO9KVn7o6xueeEr5GHfOy7NimwNIvYxgMM9xJvtjvo=" + "rev": "ef17049274a21239e5f21198b026dacbb38d7b90", + "sha256": "2N7c5L9grp+Rkhj25SoB9K9rVHq4H9IzU2KSeb1O7/E=" }, "fceumm": { "owner": "libretro", @@ -189,8 +189,8 @@ "genesis-plus-gx": { "owner": "libretro", "repo": "Genesis-Plus-GX", - "rev": "3abf975785fe77267a399cc583ccf1469e081b86", - "sha256": "QdiWKS7j80Sw0L+hf6efmQ40lQi/f95pFLQfoohoUKg=" + "rev": "74a2f6521aea975a51f99497b57c5db500d61ed9", + "sha256": "qTNbFXg5QFKSzMOWhDdDfc0FinF/D7n2OruG5zv+ANY=" }, "gpsp": { "owner": "libretro", @@ -219,8 +219,8 @@ "mame": { "owner": "libretro", "repo": "mame", - "rev": "57622367cb780013690d6ef23b2066b500f6ce92", - "sha256": "0iR1JGAhwYXXLnv8BDW1bsxfFywEI82aov2+MHw5w6Q=" + "rev": "85581d60bb24fea14542b154aef2c7b624f5b60f", + "sha256": "AUqJAXJCvddv9vPqXt5EZncKNdeLaXoc6xhYWqOMebY=" }, "mame2000": { "owner": "libretro", @@ -231,14 +231,14 @@ "mame2003": { "owner": "libretro", "repo": "mame2003-libretro", - "rev": "dbdda8e7189d63061ac42f502c0cd2dc7f1f8651", - "sha256": "XED/gunYOc+NnQ8YORw/ALP2eCTyvRdIxPiFpNf5nuA=" + "rev": "b1cc49cf1d8bbef88b890e1c2a315a39d009171b", + "sha256": "bc4uER92gHf20JjR/Qcetvlu89ZmldJ1DiQphJZt/EA=" }, "mame2003-plus": { "owner": "libretro", "repo": "mame2003-plus-libretro", - "rev": "5dd4a30500edc0b00c712750093aa287c9bb4ce2", - "sha256": "Nvm5U6rpsDZdUJONtvZ6YmztuupLaXz2QT0SBJtzO/4=" + "rev": "3249de7ceaaa92ee18e93cbd8c2ace9f1ee34c08", + "sha256": "mBF1j4em4e/fKEmPA8MmAZrXXYQiqFfAloOHdMbVq+k=" }, "mame2010": { "owner": "libretro", @@ -261,14 +261,14 @@ "melonds": { "owner": "libretro", "repo": "melonds", - "rev": "5e52c245fb38cabe881fbfa6513280ee44fc5bd8", - "sha256": "jWBZ5wg1dKEgoEV09VTGJ+I4+8uiivAHhpTiD9tPaYg=" + "rev": "0e1f06da626cbe67215c3f06f6bdf510dd4e4649", + "sha256": "ax9Vu8+1pNAHWPXrx5QA0n5EsmaJ2T7KJ5Otz8DSZwM=" }, "mesen": { "owner": "libretro", "repo": "mesen", - "rev": "9b412c1533a6d7eec7b2904775cbd26c21f02119", - "sha256": "Tf+lWfSU7AuW6Um5TXkWNAeg35W08YkYQwW0Yx3iNTM=" + "rev": "c89474c9d87df967d21b7b7d5971dc9475fec028", + "sha256": "cnPNBWXbnCpjgW/wJIboiRBzv3zrHWxpNM1kg09ShLU=" }, "mesen-s": { "owner": "libretro", @@ -291,20 +291,20 @@ "mupen64plus": { "owner": "libretro", "repo": "mupen64plus-libretro-nx", - "rev": "1b67122ff6a923c93a56ff94273e3768a6da5dff", - "sha256": "qORxhy7hXVdGUkQumOmGVXnF1kW0BShMNBVlaRu3a1w=" + "rev": "bc241538b9ef85d8b22c392d7699dc73f460e283", + "sha256": "eCosI2yL1HJpHWvZLYZQe6+1rmmyHLFYCY7bX+3hPec=" }, "neocd": { "owner": "libretro", "repo": "neocd_libretro", - "rev": "b7d96e794f2dfa500cba46c78cbc3c28349cfd05", - "sha256": "TG5xIqIM0MlHDNtPhyISqo/ctTqemKROwXgoqUsCQ0E=" + "rev": "53f5453311a1ac43700fedb2317c810586f9ccf5", + "sha256": "BZBpojShHk+j5wz/d7FnykpX562TgH6PAqTUigE+zUU=" }, "nestopia": { "owner": "libretro", "repo": "nestopia", - "rev": "5c360e55d5437ecd3520568ee44cf1af63d4696a", - "sha256": "+1QQc4gVZ5ZHt/I0bjRkW+kbPaeGUNrjbrzUoVz4drM=" + "rev": "d30c55052292826836f6dbaa2adc46fdf1a2d93c", + "sha256": "R2Kbtr2EqNUyx5eGBYyyw/ugSxVRM70TP/IsIsU0EZM=" }, "np2kai": { "owner": "AZO234", @@ -340,34 +340,34 @@ "pcsx2": { "owner": "libretro", "repo": "pcsx2", - "rev": "ad7650949e6c8c87cd2c5e278af88e3722a321bc", - "sha256": "iqXCW28werxbZNo1hlDLiD3ywSZ9hvWmxwGPJ5bRZ+w=" + "rev": "d2e37b80cfe6f6eecfe0356c7537d8e98bee7a8d", + "sha256": "rHXJG2wGoyNGvxxeZVF/I1CpaSBPUwZNERJtkG/z7MU=" }, "pcsx_rearmed": { "owner": "libretro", "repo": "pcsx_rearmed", - "rev": "a4e249a1373cf6269e1e4e0d60105e72210e67d3", - "sha256": "NOz2NQonVWEhEhAgSFHSWv6bmuTPcw0R9ihISlGwkb0=" + "rev": "aced3eb3fcaa0fe13c44c4dd196cdab42555fd98", + "sha256": "RzcrSADagi3AIPINQxc36BfMjWjatP/JL6HY744XnZk=" }, "picodrive": { "owner": "libretro", "repo": "picodrive", - "rev": "0a4ec83cbfaebb65fb1c40f26ffaf28131f9003b", - "sha256": "NOMQoDmXGrxrquAcSLo6Otcz8bH4gnhqcG/zzet3Dtk=", + "rev": "62873cab5366999207c197e9f55987daee10be4a", + "sha256": "YErmanNczeh6BeanCGllwOoTjXO+9At8l/o4UhIek4o=", "fetchSubmodules": true }, "play": { "owner": "jpd002", "repo": "Play-", - "rev": "ad3b855c6d8cc62c85e2a5d2f659159fdfaa8d80", - "sha256": "+uTf/xv2JHuNGx0bxFNXf0akRzonzRMT7gSvT2n12+o=", + "rev": "0483fc43da01b5b29883acb2cf1d02d33bba1e30", + "sha256": "OxBQFTQP0L8k0lH88Ey6KWybW912Ehsv7XjWrvFivxo=", "fetchSubmodules": true }, "ppsspp": { "owner": "hrydgard", "repo": "ppsspp", - "rev": "e654f6937a02f4a2ac8cce3574ab4f2db99f77d4", - "sha256": "LTqRA3KMV/VuQH0eTWjpOqy0U944c4ofPNEsexf93Kc=", + "rev": "1fa2f7a97191d2a73f243bfc464edef69b26f652", + "sha256": "BDX2eHtFbsloC9XYORHwpix8tbRSQUbcoP7DKFIohW4=", "fetchSubmodules": true }, "prboom": { @@ -385,8 +385,8 @@ "puae": { "owner": "libretro", "repo": "libretro-uae", - "rev": "d9a8dfbde7f6967fea3cffe09cd87e1d79a1a3fd", - "sha256": "uMn9ejknjwGmbc0JOu/xl30z3ff7vpxtA3qr2sv0glI=" + "rev": "af9e35383c00980aabb38c929e679704b624dee0", + "sha256": "hp4XOQUKktmUfLtRfVv1Oe1vqHUYu+vagxSSef55APs=" }, "quicknes": { "owner": "libretro", @@ -439,8 +439,8 @@ "stella": { "owner": "stella-emu", "repo": "stella", - "rev": "fa49e034101a22344c7bd01648d514b6cc61ac7f", - "sha256": "Svv+j7/9PvZ6djk2kfpbr9iUC8xqX8B4Plnf43Hj62A=" + "rev": "82da36dd685c68b09047d7c835175879edb68653", + "sha256": "y7AOSY2VUe4Jv+wteplvA1ul5iXHoeYQhgycD+nfIuc=" }, "stella2014": { "owner": "libretro", @@ -451,8 +451,8 @@ "swanstation": { "owner": "libretro", "repo": "swanstation", - "rev": "27a224fc9e86e0f061504878d1c0cbf3fd6891af", - "sha256": "5kW9/4gMfyvo3ExlJVivx8LhW5as3Mq5fhlNrIFDUVM=" + "rev": "f2e335bfd4751410dfb24d933f762b9a4fd7fdeb", + "sha256": "l3A1Xb6YD+OOTZEF6whst1Kr8fSRnXuIVIUN1BCa2Bw=" }, "tgbdual": { "owner": "libretro", diff --git a/pkgs/applications/emulators/retroarch/libretro-core-info.nix b/pkgs/applications/emulators/retroarch/libretro-core-info.nix index 4edd94f363e61..79f9002ed402e 100644 --- a/pkgs/applications/emulators/retroarch/libretro-core-info.nix +++ b/pkgs/applications/emulators/retroarch/libretro-core-info.nix @@ -14,7 +14,12 @@ stdenvNoCC.mkDerivation rec { rev = "v${version}"; }; - makeFlags = [ "PREFIX=$(out)" ]; + makeFlags = [ + "PREFIX=$(out)" + # By default install in $(PREFIX)/share/libretro/info + # that is not in RetroArch's core info path + "INSTALLDIR=$(PREFIX)/share/retroarch/cores" + ]; dontBuild = true; diff --git a/pkgs/applications/emulators/retroarch/retroarch-assets.nix b/pkgs/applications/emulators/retroarch/retroarch-assets.nix new file mode 100644 index 0000000000000..265b827577185 --- /dev/null +++ b/pkgs/applications/emulators/retroarch/retroarch-assets.nix @@ -0,0 +1,33 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +}: + +stdenvNoCC.mkDerivation rec { + pname = "retroarch-assets"; + version = "unstable-2022-10-24"; + + src = fetchFromGitHub { + owner = "libretro"; + repo = "retroarch-assets"; + rev = "4ec80faf1b5439d1654f407805bb66141b880826"; + hash = "sha256-j1npVKEknq7hpFr/XfST2GNHI5KnEYjZAM0dw4tMsYk="; + }; + + makeFlags = [ + "PREFIX=$(out)" + # By default install in $(PREFIX)/share/libretro/assets + # that is not in RetroArch's assets path + "INSTALLDIR=$(PREFIX)/share/retroarch/assets" + ]; + + dontBuild = true; + + meta = with lib; { + description = "Assets needed for RetroArch"; + homepage = "https://libretro.com"; + license = licenses.mit; + maintainers = with maintainers; teams.libretro.members ++ [ ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/applications/emulators/retroarch/update_cores.py b/pkgs/applications/emulators/retroarch/update_cores.py index b546569d283fe..4ed9dbf34080a 100755 --- a/pkgs/applications/emulators/retroarch/update_cores.py +++ b/pkgs/applications/emulators/retroarch/update_cores.py @@ -2,12 +2,15 @@ #!nix-shell -I nixpkgs=../../../../ -i python3 -p "python3.withPackages (ps: with ps; [ requests nix-prefetch-github ])" -p "git" import json -import sys +import os import subprocess +import sys from pathlib import Path +from concurrent.futures import ThreadPoolExecutor SCRIPT_PATH = Path(__file__).absolute().parent HASHES_PATH = SCRIPT_PATH / "hashes.json" +GET_REPO_THREADS = int(os.environ.get("GET_REPO_THREADS", 8)) CORES = { "atari800": {"repo": "libretro-atari800"}, "beetle-gba": {"repo": "beetle-gba-libretro"}, @@ -27,7 +30,7 @@ CORES = { "bsnes": {"repo": "bsnes-libretro"}, "bsnes-hd": {"repo": "bsnes-hd", "owner": "DerKoun"}, "bsnes-mercury": {"repo": "bsnes-mercury"}, - "citra": { "repo": "citra", "fetch_submodules": True }, + "citra": {"repo": "citra", "fetch_submodules": True}, "desmume": {"repo": "desmume"}, "desmume2015": {"repo": "desmume2015"}, "dolphin": {"repo": "dolphin"}, @@ -141,16 +144,23 @@ def get_repo_hash(fetcher="fetchFromGitHub", **kwargs): raise ValueError(f"Unsupported fetcher: {fetcher}") -def get_repo_hashes(cores_to_update=[]): +def get_repo_hashes(cores={}): + def get_repo_hash_from_core_def(core_def): + core, repo = core_def + info(f"Getting repo hash for '{core}'...") + result = core, get_repo_hash(**repo) + info(f"Got repo hash for '{core}'!") + return result + with open(HASHES_PATH) as f: repo_hashes = json.loads(f.read()) - for core, repo in CORES.items(): - if core in cores_to_update: - info(f"Getting repo hash for '{core}'...") - repo_hashes[core] = get_repo_hash(**repo) - else: - info(f"Skipping '{core}'...") + info(f"Running with {GET_REPO_THREADS} threads!") + with ThreadPoolExecutor(max_workers=GET_REPO_THREADS) as executor: + new_repo_hashes = executor.map(get_repo_hash_from_core_def, cores.items()) + + for core, repo in new_repo_hashes: + repo_hashes[core] = repo return repo_hashes @@ -164,7 +174,8 @@ def main(): else: cores_to_update = CORES.keys() - repo_hashes = get_repo_hashes(cores_to_update) + cores = {core: repo for core, repo in CORES.items() if core in cores_to_update} + repo_hashes = get_repo_hashes(cores) info(f"Generating '{HASHES_PATH}'...") with open(HASHES_PATH, "w") as f: f.write(json.dumps(dict(sorted(repo_hashes.items())), indent=4)) diff --git a/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch b/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch new file mode 100644 index 0000000000000..7ef7f439ecd10 --- /dev/null +++ b/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch @@ -0,0 +1,34 @@ +From 6960855a0cdfd671d214030260b340a73878af52 Mon Sep 17 00:00:00 2001 +From: Thiago Kenji Okada <thiagokokada@gmail.com> +Date: Fri, 23 Dec 2022 21:42:15 +0000 +Subject: [PATCH] Use default values for libretro_info_path/assets_directories + +--- + configuration.c | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/configuration.c b/configuration.c +index d9ab8370c4..15b575d8a2 100644 +--- a/configuration.c ++++ b/configuration.c +@@ -1483,7 +1483,7 @@ static struct config_path_setting *populate_settings_path( + SETTING_PATH("core_options_path", + settings->paths.path_core_options, false, NULL, true); + SETTING_PATH("libretro_info_path", +- settings->paths.path_libretro_info, false, NULL, true); ++ settings->paths.path_libretro_info, false, NULL, false); + SETTING_PATH("content_database_path", + settings->paths.path_content_database, false, NULL, true); + SETTING_PATH("cheat_database_path", +@@ -1539,7 +1539,7 @@ static struct config_path_setting *populate_settings_path( + SETTING_PATH("core_assets_directory", + settings->paths.directory_core_assets, true, NULL, true); + SETTING_PATH("assets_directory", +- settings->paths.directory_assets, true, NULL, true); ++ settings->paths.directory_assets, true, NULL, false); + SETTING_PATH("dynamic_wallpapers_directory", + settings->paths.directory_dynamic_wallpapers, true, NULL, true); + SETTING_PATH("thumbnails_directory", +-- +2.38.1 + diff --git a/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch b/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch deleted file mode 100644 index 256397fd49eaf..0000000000000 --- a/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch +++ /dev/null @@ -1,41 +0,0 @@ -From 6145cb9ed935621f1974655fe1ab44cf2f0fbcce Mon Sep 17 00:00:00 2001 -From: Thiago Kenji Okada <thiagokokada@gmail.com> -Date: Sat, 29 Oct 2022 12:27:55 +0100 -Subject: [PATCH] Use fixed path for libretro_core_info - ---- - configuration.c | 2 +- - frontend/drivers/platform_unix.c | 4 ++-- - 2 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/configuration.c b/configuration.c -index af3fc8f43c..c6d56308b3 100644 ---- a/configuration.c -+++ b/configuration.c -@@ -1468,7 +1468,7 @@ static struct config_path_setting *populate_settings_path( - SETTING_PATH("core_options_path", - settings->paths.path_core_options, false, NULL, true); - SETTING_PATH("libretro_info_path", -- settings->paths.path_libretro_info, false, NULL, true); -+ settings->paths.path_libretro_info, false, NULL, false); - SETTING_PATH("content_database_path", - settings->paths.path_content_database, false, NULL, true); - SETTING_PATH("cheat_database_path", -diff --git a/frontend/drivers/platform_unix.c b/frontend/drivers/platform_unix.c -index fe5f7341c9..c2a91f8c99 100644 ---- a/frontend/drivers/platform_unix.c -+++ b/frontend/drivers/platform_unix.c -@@ -1799,8 +1799,8 @@ static void frontend_unix_get_env(int *argc, - fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_CORE_INFO], base_path, - "core_info", sizeof(g_defaults.dirs[DEFAULT_DIR_CORE_INFO])); - #else -- fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_CORE_INFO], base_path, -- "cores", sizeof(g_defaults.dirs[DEFAULT_DIR_CORE_INFO])); -+ fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_CORE_INFO], "@libretro_info_path@", -+ "share/libretro/info", sizeof(g_defaults.dirs[DEFAULT_DIR_CORE_INFO])); - #endif - fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_AUTOCONFIG], base_path, - "autoconfig", sizeof(g_defaults.dirs[DEFAULT_DIR_AUTOCONFIG])); --- -2.38.0 - diff --git a/pkgs/applications/emulators/retroarch/wrapper.nix b/pkgs/applications/emulators/retroarch/wrapper.nix index 4136d263eac4c..afef0bef8a487 100644 --- a/pkgs/applications/emulators/retroarch/wrapper.nix +++ b/pkgs/applications/emulators/retroarch/wrapper.nix @@ -3,7 +3,6 @@ , makeWrapper , retroarch , symlinkJoin -, writeTextDir , cores ? [ ] }: diff --git a/pkgs/applications/emulators/ryujinx/default.nix b/pkgs/applications/emulators/ryujinx/default.nix index 90687a4e191db..7f13892b936c0 100644 --- a/pkgs/applications/emulators/ryujinx/default.nix +++ b/pkgs/applications/emulators/ryujinx/default.nix @@ -91,8 +91,6 @@ buildDotnetModule rec { "/p:ExtraDefineConstants=DISABLE_UPDATER" ]; - dotnetRestoreFlags = [ "--runtime ${dotnetCorePackages.sdk_7_0.systemToDotnetRid stdenvNoCC.targetPlatform.system}" ]; - executables = [ "Ryujinx.Headless.SDL2" "Ryujinx.Ava" diff --git a/pkgs/applications/emulators/wine/base.nix b/pkgs/applications/emulators/wine/base.nix index f1ae106df46af..ae38f5d3326fd 100644 --- a/pkgs/applications/emulators/wine/base.nix +++ b/pkgs/applications/emulators/wine/base.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation ((lib.optionalAttrs (buildScript != null) { }) // rec { inherit version src; - pname = prevName + lib.optionalString supportFlags.waylandSupport "wayland"; + pname = prevName + lib.optionalString supportFlags.waylandSupport "-wayland"; # Fixes "Compiler cannot create executables" building wineWow with mingwSupport strictDeps = true; diff --git a/pkgs/applications/emulators/wine/sources.nix b/pkgs/applications/emulators/wine/sources.nix index e00f39406719f..0e8f129f91f64 100644 --- a/pkgs/applications/emulators/wine/sources.nix +++ b/pkgs/applications/emulators/wine/sources.nix @@ -24,9 +24,9 @@ let fetchurl = args@{url, sha256, ...}: in rec { stable = fetchurl rec { - version = "7.0"; + version = "7.0.1"; url = "https://dl.winehq.org/wine/source/7.0/wine-${version}.tar.xz"; - sha256 = "sha256-W0PifVwIXLGPlzlORhgDENXu98HZHGiVQyo4ibLeCGs="; + sha256 = "sha256-gHyqeBIbFiUPJA0oKKB8pOPGCXOeVSTvD0z4muSagWw="; ## see http://wiki.winehq.org/Gecko gecko32 = fetchurl rec { diff --git a/pkgs/applications/file-managers/felix-fm/default.nix b/pkgs/applications/file-managers/felix-fm/default.nix index aea23fa46a401..7f17077132584 100644 --- a/pkgs/applications/file-managers/felix-fm/default.nix +++ b/pkgs/applications/file-managers/felix-fm/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "felix"; - version = "2.2.1"; + version = "2.2.2"; src = fetchFromGitHub { owner = "kyoheiu"; repo = pname; rev = "v${version}"; - sha256 = "sha256-DHFQLC89ZNf6wk/L9cmEj1qSfQhqFAmQ9msYTRy0y00="; + sha256 = "sha256-VKesly7Jp1PgukArNKvDGzSRh7DaL3A/Dub3dLR6ET4="; }; - cargoSha256 = "sha256-9AC8muMKc0eU3g4uQvWscIULNetlgEs6ZVsMr4dpwqk="; + cargoSha256 = "sha256-7+4SIBnu4R2mbH2nWBX9BmJL1n8t46d1vrMpNaUHAo4="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/graphics/ImageMagick/default.nix b/pkgs/applications/graphics/ImageMagick/default.nix index f3bac819acc1e..d66fee8ab717e 100644 --- a/pkgs/applications/graphics/ImageMagick/default.nix +++ b/pkgs/applications/graphics/ImageMagick/default.nix @@ -46,13 +46,13 @@ in stdenv.mkDerivation rec { pname = "imagemagick"; - version = "7.1.0-54"; + version = "7.1.0-55"; src = fetchFromGitHub { owner = "ImageMagick"; repo = "ImageMagick"; rev = version; - hash = "sha256-aQipCcqOS9viOLPHEx21MrJHdxYKZl++3DIKMz97Ukw="; + hash = "sha256-V0poyS1QnHhnSc3QbHHE+BctCBv2knriK0ihMF565d8="; }; outputs = [ "out" "dev" "doc" ]; # bin/ isn't really big diff --git a/pkgs/applications/graphics/dia/default.nix b/pkgs/applications/graphics/dia/default.nix index 429eae34a244a..d391ca75544d7 100644 --- a/pkgs/applications/graphics/dia/default.nix +++ b/pkgs/applications/graphics/dia/default.nix @@ -31,6 +31,9 @@ stdenv.mkDerivation { ''; configureFlags = lib.optional withGNOME "--enable-gnome"; + # error: implicitly declaring library function 'finite' with type 'int (double)' + NIX_CFLAGS_COMPILE = lib.optionalString (stdenv.isDarwin && stdenv.isAarch64) "-Dfinite=isfinite"; + hardeningDisable = [ "format" ]; meta = with lib; { @@ -39,7 +42,5 @@ stdenv.mkDerivation { maintainers = with maintainers; [ raskin ]; license = licenses.gpl2; platforms = platforms.unix; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/pkgs/applications/graphics/drawio/default.nix b/pkgs/applications/graphics/drawio/default.nix index 6c17c07157877..274c7b00d6d15 100644 --- a/pkgs/applications/graphics/drawio/default.nix +++ b/pkgs/applications/graphics/drawio/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "drawio"; - version = "20.6.2"; + version = "20.7.4"; src = fetchurl { url = "https://github.com/jgraph/drawio-desktop/releases/download/v${version}/drawio-x86_64-${version}.rpm"; - sha256 = "cf408c19622d7812b93f0f778b7f091a4387992f9d9a767f4bc1c417b61b7058"; + sha256 = "sha256-gmC8s+0eef09wcLE9fBiG82rRPXijRyR1WTlp4gYPq4="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/graphics/evilpixie/default.nix b/pkgs/applications/graphics/evilpixie/default.nix index 88a381ed56997..49611f1709b7f 100644 --- a/pkgs/applications/graphics/evilpixie/default.nix +++ b/pkgs/applications/graphics/evilpixie/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "evilpixie"; - version = "0.3"; + version = "0.3.1"; src = fetchFromGitHub { owner = "bcampbell"; repo = "evilpixie"; rev = "v${version}"; - sha256 = "sha256-t7ccaMXaCanCyn3oV8WJ11bhF7xTBkd992AheFJpSGQ="; + sha256 = "sha256-+DdAN+xDOYxLgLHUlr75piTEPrWpuOyXvxckhBEl7yU="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/graphics/f3d/default.nix b/pkgs/applications/graphics/f3d/default.nix index 42671599a643c..d32662937affa 100644 --- a/pkgs/applications/graphics/f3d/default.nix +++ b/pkgs/applications/graphics/f3d/default.nix @@ -13,9 +13,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; - buildInputs = [ vtk_9 ] - ++ lib.optionals stdenv.isLinux [ libGL libX11 ] - ++ lib.optionals stdenv.isDarwin [ Cocoa OpenGL ]; + buildInputs = [ vtk_9 ] ++ lib.optionals stdenv.isDarwin [ Cocoa OpenGL ]; # conflict between VTK and Nixpkgs; # see https://github.com/NixOS/nixpkgs/issues/89167 diff --git a/pkgs/applications/graphics/foxotron/default.nix b/pkgs/applications/graphics/foxotron/default.nix index c06e707b348f3..2bcc437511281 100644 --- a/pkgs/applications/graphics/foxotron/default.nix +++ b/pkgs/applications/graphics/foxotron/default.nix @@ -35,6 +35,11 @@ stdenv.mkDerivation rec { sha256 = "sha256-WjsVvFhwVCzclHxA+Gu2YtR2yK0Opqhncwlg9FEhOLk="; }; + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace "set(CMAKE_OSX_ARCHITECTURES x86_64)" "" + ''; + nativeBuildInputs = [ cmake pkg-config makeWrapper ]; buildInputs = [ zlib ] @@ -70,7 +75,5 @@ stdenv.mkDerivation rec { license = licenses.unlicense; maintainers = with maintainers; [ OPNA2608 ]; platforms = platforms.all; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/pkgs/applications/graphics/openboard/default.nix b/pkgs/applications/graphics/openboard/default.nix index 0725acd2379d8..b0d59d4a7f55e 100644 --- a/pkgs/applications/graphics/openboard/default.nix +++ b/pkgs/applications/graphics/openboard/default.nix @@ -1,10 +1,10 @@ -{ mkDerivation, lib, fetchFromGitHub, fetchpatch, copyDesktopItems, makeDesktopItem, qmake -, qtbase, qtxmlpatterns, qttools, qtwebkit, libGL, fontconfig, openssl, poppler +{ stdenv, lib, fetchFromGitHub, fetchpatch, copyDesktopItems, makeDesktopItem, qmake +, qtbase, qtxmlpatterns, qttools, qtwebengine, libGL, fontconfig, openssl, poppler, wrapQtAppsHook , ffmpeg, libva, alsa-lib, SDL, x264, libvpx, libvorbis, libtheora, libogg , libopus, lame, fdk_aac, libass, quazip, libXext, libXfixes }: let - importer = mkDerivation rec { + importer = stdenv.mkDerivation rec { pname = "openboard-importer"; version = "unstable-2016-10-08"; @@ -16,44 +16,38 @@ let }; nativeBuildInputs = [ qmake ]; + buildInputs = [ qtbase ]; + dontWrapQtApps = true; installPhase = '' install -Dm755 OpenBoardImporter $out/bin/OpenBoardImporter ''; }; -in mkDerivation rec { +in stdenv.mkDerivation rec { pname = "openboard"; - version = "1.6.1"; + version = "unstable-2022-11-28"; src = fetchFromGitHub { owner = "OpenBoard-org"; repo = "OpenBoard"; - rev = "v${version}"; - sha256 = "sha256-OlGXGIMghil/GG6eso20+CWo/hCjarXGs6edXX9pc/M="; + rev = "9de37af2df1a7c0d88f71c94ab2db1815d082862"; + sha256 = "sha256-TiKrSyxtF1g1bepCoFxoxGOdREXhsMrS3g8uZKSiugg="; }; - patches = [ - # Fix build with poppler >= 22.01 - (fetchpatch { - url = "https://github.com/OpenBoard-org/OpenBoard/commit/3a9b043e0fafec08e4123f362dcb7750f7476b59.patch"; - sha256 = "sha256-yD163FK79HBU1W7m6sLxhfsRo4r/38zYTFWgeyqwU1o="; - }) - ]; - postPatch = '' substituteInPlace OpenBoard.pro \ - --replace '/usr/include/quazip' '${quazip}/include/QuaZip-Qt5-${quazip.version}/quazip' \ + --replace '/usr/include/quazip5' '${quazip}/include/QuaZip-Qt5-${quazip.version}/quazip' \ --replace '-lquazip5' '-lquazip1-qt5' \ --replace '/usr/include/poppler' '${poppler.dev}/include/poppler' ''; - nativeBuildInputs = [ qmake copyDesktopItems ]; + nativeBuildInputs = [ qmake copyDesktopItems wrapQtAppsHook ]; buildInputs = [ qtbase qtxmlpatterns qttools - qtwebkit + qtwebengine libGL fontconfig openssl diff --git a/pkgs/applications/graphics/rnote/default.nix b/pkgs/applications/graphics/rnote/default.nix index 560c5c6a49275..a7b96c4227e37 100644 --- a/pkgs/applications/graphics/rnote/default.nix +++ b/pkgs/applications/graphics/rnote/default.nix @@ -23,20 +23,20 @@ stdenv.mkDerivation rec { pname = "rnote"; - version = "0.5.9"; + version = "0.5.10"; src = fetchFromGitHub { owner = "flxzt"; repo = "rnote"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-Sy8EHl4UuDMwRAKDkl7njD9GSzKpy1Cfsgw53On+nxo="; + hash = "sha256-k1Ov35cz2U39yuIYIr9MW6M/A8MNasoybELC4U3xok0="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-Pe4lNcvJNELAitaGY56EUJ8iN7Dkh8DoUpA/t+aRuqk="; + hash = "sha256-MsLpZl8AvF2BJU6PfC8BmTADR7T3e7+HstHQa+YYJFo="; }; nativeBuildInputs = [ @@ -71,8 +71,8 @@ stdenv.mkDerivation rec { postPatch = '' pushd build-aux - chmod +x meson_post_install.py - patchShebangs meson_post_install.py + chmod +x cargo_build.py meson_post_install.py + patchShebangs cargo_build.py meson_post_install.py substituteInPlace meson_post_install.py --replace "gtk-update-icon-cache" "gtk4-update-icon-cache" popd ''; diff --git a/pkgs/applications/graphics/vengi-tools/default.nix b/pkgs/applications/graphics/vengi-tools/default.nix index a7b289e33b397..bbee8671cc675 100644 --- a/pkgs/applications/graphics/vengi-tools/default.nix +++ b/pkgs/applications/graphics/vengi-tools/default.nix @@ -29,13 +29,13 @@ stdenv.mkDerivation rec { pname = "vengi-tools"; - version = "0.0.22"; + version = "0.0.23"; src = fetchFromGitHub { owner = "mgerhardy"; repo = "vengi"; rev = "v${version}"; - sha256 = "sha256-OlOnr1Spy8kdie9CyLVOQkY1+ib6Uwcd/xP5TSaZkYg="; + sha256 = "sha256-wRqQ7x6eQTrzFU++Qgq/7NXXo5F1onlZBdQ9ttNvvEw="; }; nativeBuildInputs = [ @@ -106,7 +106,5 @@ stdenv.mkDerivation rec { license = [ licenses.mit licenses.cc-by-sa-30 ]; maintainers = with maintainers; [ fgaz ]; platforms = platforms.all; - # Requires SDK 10.14 https://github.com/NixOS/nixpkgs/issues/101229 - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/pkgs/applications/maui/default.nix b/pkgs/applications/maui/default.nix index 3cd8b56015bbe..6f045bda658b9 100644 --- a/pkgs/applications/maui/default.nix +++ b/pkgs/applications/maui/default.nix @@ -64,6 +64,7 @@ let # libraries mauikit = callPackage ./mauikit.nix { }; mauikit-accounts = callPackage ./mauikit-accounts.nix { }; + mauikit-calendar = callPackage ./mauikit-calendar.nix { }; mauikit-filebrowsing = callPackage ./mauikit-filebrowsing.nix { }; mauikit-imagetools = callPackage ./mauikit-imagetools.nix { }; mauikit-texteditor = callPackage ./mauikit-texteditor.nix { }; diff --git a/pkgs/applications/maui/mauikit-calendar.nix b/pkgs/applications/maui/mauikit-calendar.nix new file mode 100644 index 0000000000000..508319f1616d4 --- /dev/null +++ b/pkgs/applications/maui/mauikit-calendar.nix @@ -0,0 +1,36 @@ +{ lib +, mkDerivation +, cmake +, extra-cmake-modules +, mauikit +, qtquickcontrols2 +, akonadi +, akonadi-contacts +, calendarsupport +, eventviews +}: + +mkDerivation { + pname = "mauikit-calendar"; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + akonadi + akonadi-contacts + calendarsupport + eventviews + mauikit + qtquickcontrols2 + ]; + + meta = with lib; { + homepage = "https://invent.kde.org/maui/mauikit-calendar"; + description = "Calendar support components for Maui applications"; + license = licenses.lgpl21Plus; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/pkgs/applications/misc/1password-gui/default.nix b/pkgs/applications/misc/1password-gui/default.nix index e6cf00d669ded..3c08f1d8a9dac 100644 --- a/pkgs/applications/misc/1password-gui/default.nix +++ b/pkgs/applications/misc/1password-gui/default.nix @@ -9,43 +9,43 @@ let pname = "1password"; - version = if channel == "stable" then "8.9.8" else "8.9.10-1.BETA"; + version = if channel == "stable" then "8.9.10" else "8.9.12-4.BETA"; sources = { stable = { x86_64-linux = { url = "https://downloads.1password.com/linux/tar/stable/x86_64/1password-${version}.x64.tar.gz"; - sha256 = "sha256-s5GFGsSelnvqdoEgCzU88BG0dc4bUG4IX3fbeciIPIk="; + sha256 = "sha256-aoa00W5zvZQeHKd2Eqyrxl5Z1PwLMHc5lkMUskLiD74="; }; aarch64-linux = { url = "https://downloads.1password.com/linux/tar/stable/aarch64/1password-${version}.arm64.tar.gz"; - sha256 = "sha256-wNF9jwHTxuojFQ+s05jhb7dFihE/36cadaBONqrMYF0="; + sha256 = "sha256-Zt64UGKI3+DayS6XP7jTE+pxv52tUUZbUHiuzjcm1JI="; }; x86_64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-x86_64.zip"; - sha256 = "sha256-Ok0M6jPZ513iTE646PDPu+dK6Y3b/J8oejJQQkQMS2w="; + sha256 = "sha256-sx9eASpMcgkIH1GRzJMqSQa5Y5GJlYU/20CZFyFK+OU="; }; aarch64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-aarch64.zip"; - sha256 = "sha256-zocY/0IgiGwuY/ZrMbip34HoRp90ATWRpfAIRhyH9M8="; + sha256 = "sha256-Z1cEynO9iWZra542CVGmefrTNerMe13OcTAzWXNi8jI="; }; }; beta = { x86_64-linux = { url = "https://downloads.1password.com/linux/tar/beta/x86_64/1password-${version}.x64.tar.gz"; - sha256 = "sha256-fW+9mko1OZ5zlTnbZucOjvjus8KVZA4Mcga/4HJyJL4="; + sha256 = "sha256-/WXaLINqLFLft+wrmr+fV0kM9qS5w4etFiGltnzoVdo="; }; aarch64-linux = { url = "https://downloads.1password.com/linux/tar/beta/aarch64/1password-${version}.arm64.tar.gz"; - sha256 = "sha256-jczDhKMCEHjE5yXr5jczSalGa4pVFs7V8BcIhueT88M="; + sha256 = "sha256-Zv9uHkFCZ0flBMAwQBjNhqFWhAXKyHBfZk733hbSag4="; }; x86_64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-x86_64.zip"; - sha256 = "sha256-apgXMoZ7yNtUgf6efuSjAK6TGFR230FMK4j95OoXgwQ="; + sha256 = "sha256-Vryk6nMQY+0NIgwJkZ2j3vrxyhrzxbe96jbyoNbPIR0="; }; aarch64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-aarch64.zip"; - sha256 = "sha256-tdGu648joHu5E8ECU1TpkxgfU6ZMHlJAy+VcNDtIscA="; + sha256 = "sha256-74iOaNkuPRKUsTNNd7UTpy5ahjoMmxiNT84Op5ztRGk="; }; }; }; diff --git a/pkgs/applications/misc/1password/default.nix b/pkgs/applications/misc/1password/default.nix index 5498651cfe80b..ac408221324a4 100644 --- a/pkgs/applications/misc/1password/default.nix +++ b/pkgs/applications/misc/1password/default.nix @@ -12,12 +12,12 @@ let if extension == "zip" then fetchzip args else fetchurl args; pname = "1password-cli"; - version = "2.9.1"; + version = "2.11.0"; sources = rec { - aarch64-linux = fetch "linux_arm64" "sha256-sFh3jIGknR7RA3/pckvBkFvVoxYfXqYuyUJuc/AfecU=" "zip"; - i686-linux = fetch "linux_386" "sha256-JbBjAdGRtpwkk1svoyNw22BGbslwD8ZuNJRihUoFMP4=" "zip"; - x86_64-linux = fetch "linux_amd64" "sha256-yUo8LhT9iTl1z5+Cs9/E/YPMrnnimhFK9A1b1og0TSA=" "zip"; - aarch64-darwin = fetch "apple_universal" "sha256-IFaLcMXOLc0oZIWVOaDuyUmUxJc+Keeg77RR/SlCGxI=" "pkg"; + aarch64-linux = fetch "linux_arm64" "sha256-UCPF+tj1ELzLO4+UAYS/SS0i645oO55grbGGAhe7zBE=" "zip"; + i686-linux = fetch "linux_386" "sha256-7vCCOKMSc2vrwSpAO5hYgdz/e6bveG0liG7fjbWge6c=" "zip"; + x86_64-linux = fetch "linux_amd64" "sha256-mtD1caAc0PIFN8L+pw5tO0Tkg+JD99xBUvPwejVgVwU=" "zip"; + aarch64-darwin = fetch "apple_universal" "sha256-5oZQEAnRPgE9GABoR0UCr6qjUwAdtFADoonJIeRHGdE=" "pkg"; x86_64-darwin = aarch64-darwin; }; platforms = builtins.attrNames sources; diff --git a/pkgs/applications/misc/ArchiSteamFarm/default.nix b/pkgs/applications/misc/ArchiSteamFarm/default.nix index 878924c20e771..7896604b0e9a3 100644 --- a/pkgs/applications/misc/ArchiSteamFarm/default.nix +++ b/pkgs/applications/misc/ArchiSteamFarm/default.nix @@ -25,9 +25,6 @@ buildDotnetModule rec { nugetDeps = ./deps.nix; - # Without this dotnet attempts to restore for Windows targets, which it cannot find the dependencies for - dotnetRestoreFlags = [ "--runtime ${dotnetCorePackages.sdk_6_0.systemToDotnetRid stdenvNoCC.targetPlatform.system}" ]; - projectFile = "ArchiSteamFarm.sln"; executables = [ "ArchiSteamFarm" ]; diff --git a/pkgs/applications/misc/bottles/default.nix b/pkgs/applications/misc/bottles/default.nix index 2483bd3471d0a..e39612f9ee1c2 100644 --- a/pkgs/applications/misc/bottles/default.nix +++ b/pkgs/applications/misc/bottles/default.nix @@ -28,13 +28,13 @@ }: python3Packages.buildPythonApplication rec { pname = "bottles-unwrapped"; - version = "2022.12.14"; + version = "2022.12.14.1"; src = fetchFromGitHub { owner = "bottlesdevs"; repo = "bottles"; rev = version; - sha256 = "sha256-G2FQy+mea/+2RjK/WjLeX+7TP+HU6fCUFYuprFGKEyw="; + sha256 = "sha256-hoWyXCP7/0m8akUGBJyuF2yQcRKR8C7MDBLUdPdtBgE="; }; patches = [ ./vulkan_icd.patch ]; diff --git a/pkgs/applications/misc/bottles/fhsenv.nix b/pkgs/applications/misc/bottles/fhsenv.nix index dfb0d36f64dd0..43923c99eae32 100644 --- a/pkgs/applications/misc/bottles/fhsenv.nix +++ b/pkgs/applications/misc/bottles/fhsenv.nix @@ -2,6 +2,7 @@ , buildFHSUserEnvBubblewrap , symlinkJoin , bottles-unwrapped +, gst_all_1 , extraPkgs ? pkgs: [ ] , extraLibraries ? pkgs: [ ] }: @@ -9,6 +10,8 @@ let fhsEnv = { targetPkgs = pkgs: with pkgs; [ bottles-unwrapped + # This only allows to enable the toggle, vkBasalt won't work if not installed with environment.systemPackages (or nix-env) + # See https://github.com/bottlesdevs/Bottles/issues/2401 vkbasalt ] ++ extraPkgs pkgs; @@ -46,6 +49,9 @@ let fhsEnv = { gsm gst_all_1.gstreamer gst_all_1.gst-plugins-base + gst_all_1.gst-plugins-good + gst_all_1.gst-plugins-ugly + gst_all_1.gst-plugins-bad libgphoto2 libjpeg_turbo libkrb5 @@ -83,6 +89,13 @@ let fhsEnv = { zlib # Freetype ] ++ xorgDeps pkgs ++ extraLibraries pkgs; + + profile = '' + # Remove if merged https://github.com/bottlesdevs/Bottles/pull/2415 + export BOTTLES_USE_SYSTEM_GSTREAMER=1 + # Dirty hack, may be related with https://github.com/NixOS/nixpkgs/issues/148007 + export GST_PLUGIN_PATH=${ lib.makeSearchPath "lib/gstreamer-1.0" (with gst_all_1; [ gstreamer gst-plugins-base gst-plugins-good gst-plugins-ugly gst-plugins-bad ]) } + ''; }; in symlinkJoin { diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index 2074addb1b216..f9a1faaf036d8 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -25,6 +25,7 @@ , sqlite , wrapQtAppsHook , xdg-utils +, wrapGAppsHook , unrarSupport ? false }: @@ -71,6 +72,7 @@ stdenv.mkDerivation rec { pkg-config qmake removeReferencesTo + wrapGAppsHook wrapQtAppsHook ]; @@ -169,6 +171,7 @@ stdenv.mkDerivation rec { # Wrap manually dontWrapQtApps = true; + dontWrapGApps = true; # Remove some references to shrink the closure size. This reference (as of # 2018-11-06) was a single string like the following: @@ -178,7 +181,9 @@ stdenv.mkDerivation rec { $out/lib/calibre/calibre/plugins/podofo.so for program in $out/bin/*; do - wrapQtApp $program \ + wrapProgram $program \ + ''${qtWrapperArgs[@]} \ + ''${gappsWrapperArgs[@]} \ --prefix PYTHONPATH : $PYTHONPATH \ --prefix PATH : ${poppler_utils.out}/bin done diff --git a/pkgs/applications/misc/cask-server/default.nix b/pkgs/applications/misc/cask-server/default.nix new file mode 100644 index 0000000000000..8a237a14bded7 --- /dev/null +++ b/pkgs/applications/misc/cask-server/default.nix @@ -0,0 +1,36 @@ +{ lib +, pkgs +, mkDerivation +, fetchFromGitHub +, cmake +, extra-cmake-modules +}: + +mkDerivation rec { + pname = "cask-server"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "Nitrux"; + repo = pname; + rev = "refs/tags/v${version}"; + sha256 = "sha256-/dDrJcyp6+r6G3E0KPOEH0hEY9C5XIg1z2gRZV3GZcg="; + }; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + meta = with lib; { + description = "Public server and API to interface with Cask features"; + homepage = "https://github.com/Nitrux/cask-server"; + license = with licenses; [ + bsd2 + lgpl21Plus + cc0 + ]; + maintainers = with maintainers; [ onny ]; + }; + +} diff --git a/pkgs/applications/misc/dmenu-rs/Cargo.lock b/pkgs/applications/misc/dmenu-rs/Cargo.lock new file mode 100644 index 0000000000000..8c4fd4f6a7892 --- /dev/null +++ b/pkgs/applications/misc/dmenu-rs/Cargo.lock @@ -0,0 +1,862 @@ +# This file is automatically @generated by Cargo. +# It is not intended for manual editing. +version = 3 + +[[package]] +name = "aho-corasick" +version = "0.7.19" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b4f55bd91a0978cbfd91c457a164bab8b4001c833b7f323132c0a4e1922dd44e" +dependencies = [ + "memchr", +] + +[[package]] +name = "ansi_term" +version = "0.12.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum 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+checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6" + +[[package]] +name = "winapi-util" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178" +dependencies = [ + "winapi", +] + +[[package]] +name = "winapi-x86_64-pc-windows-gnu" +version = "0.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" + +[[package]] +name = "x11" +version = "2.20.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f7ae97874a928d821b061fce3d1fc52f08071dd53c89a6102bc06efcac3b2908" +dependencies = [ + "libc", + "pkg-config", +] + +[[package]] +name = "x11-clipboard" +version = "0.3.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "89bd49c06c9eb5d98e6ba6536cf64ac9f7ee3a009b2f53996d405b3944f6bcea" +dependencies = [ + "xcb", +] + +[[package]] +name = "xcb" +version = "0.8.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5e917a3f24142e9ff8be2414e36c649d47d6cc2ba81f16201cdef96e533e02de" +dependencies = [ + "libc", + "log", +] + +[[package]] +name = "yaml-rust" +version = "0.3.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e66366e18dc58b46801afbf2ca7661a9f59cc8c5962c29892b6039b4f86fa992" diff --git a/pkgs/applications/misc/dmenu-rs/default.nix b/pkgs/applications/misc/dmenu-rs/default.nix new file mode 100644 index 0000000000000..8550dde61484c --- /dev/null +++ b/pkgs/applications/misc/dmenu-rs/default.nix @@ -0,0 +1,89 @@ +{ stdenv +, rustPlatform +, lib +, fetchFromGitHub +, cargo +, expat +, fontconfig +, libXft +, libXinerama +, m4 +, pkg-config +, python3 +}: + +# The dmenu-rs package has extensive plugin support. However, this derivation +# only builds the package with the default set of plugins. If you'd like to +# further customize dmenu-rs you can build it from the source. +# See: https://github.com/Shizcow/dmenu-rs#plugins +stdenv.mkDerivation rec { + pname = "dmenu-rs"; + version = "5.5.1"; + + src = fetchFromGitHub { + owner = "Shizcow"; + repo = pname; + rev = version; + sha256 = "sha256-WpDqBjIZ5ESnoRtWZmvm+gNTLKqxL4IibRVCj0yRIFM="; + }; + + nativeBuildInputs = [ + cargo + m4 + pkg-config + python3 + rustPlatform.bindgenHook + rustPlatform.cargoSetupHook + ]; + + buildInputs = [ + expat + fontconfig + libXft + libXinerama + ]; + + # The dmenu-rs repository does not include a Cargo.lock because of its + # dynamic build and plugin support. Generating it with make and checking it + # in to nixpkgs here was the easiest way to supply it to rustPlatform. + # See: https://github.com/Shizcow/dmenu-rs/issues/34#issuecomment-757415584 + cargoDeps = rustPlatform.importCargoLock { + lockFile = ./Cargo.lock; + }; + + # The rust-xcb dependency dynamically generates rust code at build time. + # This derivation uses nixpkgs rust functions that vendor each cargo + # dependency's source code into the READ-ONLY nix store. To avoid the code + # generation step failing, we copy the rust-xcb source out of the nix store + # and make it writeable. Also, we remove the build's hardcoded c compiler. + # See: https://github.com/rust-x-bindings/rust-xcb/tree/v0.8.2 + postPatch = '' + substituteInPlace config.mk --replace "clang" "" + + chmod +w "$NIX_BUILD_TOP/cargo-vendor-dir" + mkdir -p "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2-readwrite" + cp -r --no-preserve=mod "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2/." "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2-readwrite" + unlink "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2" + mv "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2-readwrite" "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2" + + cp ${./Cargo.lock} src/Cargo.lock + ''; + + cargoRoot = "src"; + + installFlags = [ "PREFIX=$(out)" ]; + + # Running make test requires an X11 server. It also runs dmenu, which then + # hangs on user input. It was too hard to figure out how to run these tests + # deterministically. See the original PR for some discussion on this. + doCheck = false; + + meta = with lib; { + description = "A pixel perfect port of dmenu, rewritten in Rust with extensive plugin support"; + homepage = "https://github.com/Shizcow/dmenu-rs"; + license = with licenses; [ gpl3Only ]; + maintainers = with maintainers; [ benjaminedwardwebb ]; + platforms = platforms.linux; + broken = (stdenv.isLinux && stdenv.isAarch64); + }; +} diff --git a/pkgs/applications/misc/free42/default.nix b/pkgs/applications/misc/free42/default.nix index f1df7445fbe0a..71145c6809f64 100644 --- a/pkgs/applications/misc/free42/default.nix +++ b/pkgs/applications/misc/free42/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "free42"; - version = "3.0.16"; + version = "3.0.17"; src = fetchFromGitHub { owner = "thomasokken"; repo = pname; rev = "v${version}"; - hash = "sha256-hL4Ytu9zf8x+H/TuvJ3m0E3d8gMZFIDogWEYlaOap+g="; + hash = "sha256-3G2vRPupZtZKF1VazNQGa1AplqFzhI5M+olyeJ26kXo="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/gallery-dl/default.nix b/pkgs/applications/misc/gallery-dl/default.nix index edd5f491cced2..2ec4d7df2402a 100644 --- a/pkgs/applications/misc/gallery-dl/default.nix +++ b/pkgs/applications/misc/gallery-dl/default.nix @@ -2,13 +2,13 @@ buildPythonApplication rec { pname = "gallery-dl"; - version = "1.24.1"; + version = "1.24.2"; format = "setuptools"; src = fetchPypi { inherit version; pname = "gallery_dl"; - sha256 = "sha256-pjm410aT4+Lj3PBAlibmglNPGlmBgkRoHAg7JrIDp0s="; + sha256 = "sha256-KqDprKoqpbNpUrM7nAYj71cuMh6U3s65kqVTW2cHeLc="; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/misc/gpxsee/default.nix b/pkgs/applications/misc/gpxsee/default.nix index 8de8e30269a34..44999ff96e636 100644 --- a/pkgs/applications/misc/gpxsee/default.nix +++ b/pkgs/applications/misc/gpxsee/default.nix @@ -21,13 +21,13 @@ let in stdenv.mkDerivation rec { pname = "gpxsee"; - version = "11.9"; + version = "11.11"; src = fetchFromGitHub { owner = "tumic0"; repo = "GPXSee"; rev = version; - hash = "sha256-R/Kuk4nRJg3ozNNmzzNDnGcsmBmlk0g9d+F8JwLFz98="; + hash = "sha256-5kT1vcbCc0Fa3ylrcQetth50IQu57upiWRRpub93jlE="; }; patches = (substituteAll { diff --git a/pkgs/applications/misc/heimer/default.nix b/pkgs/applications/misc/heimer/default.nix index 45ac4582220e2..c3571e01dbcd8 100644 --- a/pkgs/applications/misc/heimer/default.nix +++ b/pkgs/applications/misc/heimer/default.nix @@ -8,13 +8,13 @@ mkDerivation rec { pname = "heimer"; - version = "3.6.3"; + version = "3.6.4"; src = fetchFromGitHub { owner = "juzzlin"; repo = pname; rev = version; - hash = "sha256-G0prFxKXHiRtV6uVp1Ckym0/rOFxrOHrEI5K9hkWjfU="; + hash = "sha256-hKVBPSWIbKXMEmk9C7k+3NBqLwYybN6Jql9qigIx4jE="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/hstr/default.nix b/pkgs/applications/misc/hstr/default.nix index bb31be1ad27c9..e7ad05b5085ae 100644 --- a/pkgs/applications/misc/hstr/default.nix +++ b/pkgs/applications/misc/hstr/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "hstr"; - version = "2.5"; + version = "2.6"; src = fetchFromGitHub { owner = "dvorka"; repo = "hstr"; rev = version; - sha256 = "sha256-qIMnU+gRR3HPAOrrrduN68R5E8ZJKROfZ0sEHL0E4XU="; + sha256 = "sha256-yfaDISnTDb20DgMOvh6jJYisV6eL/Mp5jafnWEnFG8c="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix index a92a6801ba90f..9985a1a872524 100644 --- a/pkgs/applications/misc/hugo/default.nix +++ b/pkgs/applications/misc/hugo/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hugo"; - version = "0.108.0"; + version = "0.109.0"; src = fetchFromGitHub { owner = "gohugoio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-MbpBGqu7IwQCf9DjSfIDi25ZGJYTI6xxSk9wPWxychw="; + sha256 = "sha256-Eak4sU8UwzPQ5iuoNX+KrAJdZ6ZvBdDyJx4xeQI4sjY="; }; - vendorSha256 = "sha256-qFqSpQExz4u1ngjpt2Li6dk/qz4DCKEY9IcFFCna5is="; + vendorSha256 = "sha256-0m5flwvchExP1IDAuE/oTB2eUEbq5KCE8Zvzp5e7yZ8="; doCheck = false; diff --git a/pkgs/applications/misc/joplin-desktop/default.nix b/pkgs/applications/misc/joplin-desktop/default.nix index d712712908f0c..4cec4a97fe06c 100644 --- a/pkgs/applications/misc/joplin-desktop/default.nix +++ b/pkgs/applications/misc/joplin-desktop/default.nix @@ -2,7 +2,7 @@ let pname = "joplin-desktop"; - version = "2.8.8"; + version = "2.9.17"; name = "${pname}-${version}"; inherit (stdenv.hostPlatform) system; @@ -16,8 +16,8 @@ let src = fetchurl { url = "https://github.com/laurent22/joplin/releases/download/v${version}/Joplin-${version}.${suffix}"; sha256 = { - x86_64-linux = "0ivljlw6kdpg94q9syi11zmk54w06m8j3zicx9nppqg720fw4zv3"; - x86_64-darwin = "0gpr3zi6z98pkg8hsvcmpck754cph53kmgl3bhp3zmmmfj0kxjhs"; + x86_64-linux = "sha256-kdmxSXKHIyVdvVNEoZkSIQlOkTt97bpAdrV0sxhL1Ug="; + x86_64-darwin = "sha256-o3Q5foEuBi4OTHr6mP0ZXOxkkUw/c/jXaZOtztQf0gM="; }.${system} or throwSystem; }; diff --git a/pkgs/applications/misc/keepassx/community.nix b/pkgs/applications/misc/keepassx/community.nix index 0275760af407d..2cdaf78c0281b 100644 --- a/pkgs/applications/misc/keepassx/community.nix +++ b/pkgs/applications/misc/keepassx/community.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub , cmake , qttools @@ -81,8 +82,9 @@ stdenv.mkDerivation rec { export LC_ALL="en_US.UTF-8" export QT_QPA_PLATFORM=offscreen export QT_PLUGIN_PATH="${qtbase.bin}/${qtbase.qtPluginPrefix}" - # testcli and testgui are flaky - skip them both - make test ARGS+="-E 'testcli|testgui' --output-on-failure" + # testcli, testgui and testkdbx4 are flaky - skip them all + # testautotype on darwin throws "QWidget: Cannot create a QWidget without QApplication" + make test ARGS+="-E 'testcli|testgui${lib.optionalString stdenv.isDarwin "|testautotype|testkdbx4"}' --output-on-failure" runHook postCheck ''; @@ -92,6 +94,8 @@ stdenv.mkDerivation rec { dontWrapGApps = true; preFixup = '' qtWrapperArgs+=("''${gappsWrapperArgs[@]}") + '' + lib.optionalString stdenv.isDarwin '' + wrapQtApp "$out/Applications/KeePassXC.app/Contents/MacOS/KeePassXC" ''; buildInputs = [ @@ -128,6 +132,5 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ jonafato turion srapenne ]; platforms = platforms.linux ++ platforms.darwin; - broken = stdenv.isDarwin; # see to https://github.com/NixOS/nixpkgs/issues/172165 }; } diff --git a/pkgs/applications/misc/lswt/default.nix b/pkgs/applications/misc/lswt/default.nix new file mode 100644 index 0000000000000..d6bdf77a8bdbb --- /dev/null +++ b/pkgs/applications/misc/lswt/default.nix @@ -0,0 +1,28 @@ +{ lib, stdenv, fetchFromSourcehut, nixos, wayland }: + +stdenv.mkDerivation rec { + pname = "lswt"; + version = "1.0.4"; + + src = fetchFromSourcehut { + owner = "~leon_plickat"; + repo = pname; + rev = "v${version}"; + hash = "sha256-Orwa7sV56AeznEcq/Xj5qj4PALMxq0CI+ZnXuY4JYE0="; + }; + + buildInputs = [ wayland ]; + + makeFlags = [ + "DESTDIR=${placeholder "out"}" + "PREFIX=" + ]; + + meta = with lib; { + description = "A command that lists Wayland toplevels"; + homepage = "https://sr.ht/~leon_plickat/lswt"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ edrex ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/lutris/default.nix b/pkgs/applications/misc/lutris/default.nix index f8836f2802c37..c67ec4cc2737f 100644 --- a/pkgs/applications/misc/lutris/default.nix +++ b/pkgs/applications/misc/lutris/default.nix @@ -48,6 +48,7 @@ , fluidsynth , xorgserver , xorg +, util-linux }: let @@ -68,22 +69,12 @@ let xorgserver xorg.setxkbmap xorg.xkbcomp + # bypass mount suid wrapper which does not work in fhsenv + util-linux ]; - - binPath = lib.makeBinPath requiredTools; - - gstDeps = with gst_all_1; [ - gst-libav - gst-plugins-bad - gst-plugins-base - gst-plugins-good - gst-plugins-ugly - gstreamer - ]; - in buildPythonApplication rec { - pname = "lutris-original"; + pname = "lutris-unwrapped"; version = "0.5.12"; src = fetchFromGitHub { @@ -104,7 +95,14 @@ buildPythonApplication rec { libnotify pango webkitgtk - ] ++ gstDeps; + ] ++ (with gst_all_1; [ + gst-libav + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gst-plugins-ugly + gstreamer + ]); # See `install_requires` in https://github.com/lutris/lutris/blob/master/setup.py propagatedBuildInputs = [ @@ -125,19 +123,20 @@ buildPythonApplication rec { --replace "'libmagic.so.1'" "'${lib.getLib file}/lib/libmagic.so.1'" ''; - checkInputs = [ xvfb-run nose2 flake8 ] ++ requiredTools; - preCheck = "export HOME=$PWD"; checkPhase = '' runHook preCheck + + export HOME=$PWD xvfb-run -s '-screen 0 800x600x24' make test + runHook postCheck ''; # avoid double wrapping dontWrapGApps = true; makeWrapperArgs = [ - "--prefix PATH : ${binPath}" + "--prefix PATH : ${lib.makeBinPath requiredTools}" "\${gappsWrapperArgs[@]}" ]; # needed for glib-schemas to work correctly (will crash on dialogues otherwise) diff --git a/pkgs/applications/misc/mangal/default.nix b/pkgs/applications/misc/mangal/default.nix index 7e8ea89fe9d15..b443c16601de0 100644 --- a/pkgs/applications/misc/mangal/default.nix +++ b/pkgs/applications/misc/mangal/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "mangal"; - version = "4.0.4"; + version = "4.0.5"; src = fetchFromGitHub { owner = "metafates"; repo = pname; rev = "v${version}"; - hash = "sha256-U1NmJsh7OuS0/kktmMcIjEaqc1ABtWG0ilSUw0UL8aU="; + hash = "sha256-T0QoHqL07J4Fb95qluYPb0yZYwdr7vDNLlrp7zPhtrA="; }; proxyVendor = true; diff --git a/pkgs/applications/misc/nwg-dock/default.nix b/pkgs/applications/misc/nwg-dock/default.nix new file mode 100644 index 0000000000000..32361b276b208 --- /dev/null +++ b/pkgs/applications/misc/nwg-dock/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, pkg-config +, gtk3 +, gtk-layer-shell +}: + +buildGoModule rec { + pname = "nwg-dock"; + version = "0.3.2"; + + src = fetchFromGitHub { + owner = "nwg-piotr"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-X2AhzQsgUWHkPp1YoAxcbq+Oni9C6Yrnyt+Plxya8OI="; + }; + + vendorSha256 = "sha256-5vGfWEBiC3ZJzVTHaOPbaaK/9+yg7Nj0mpbJbYpbY/A="; + + ldflags = [ "-s" "-w" ]; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ gtk3 gtk-layer-shell ]; + + meta = with lib; { + description = "GTK3-based dock for sway"; + homepage = "https://github.com/nwg-piotr/nwg-dock"; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/applications/misc/pdf-quench/default.nix b/pkgs/applications/misc/pdf-quench/default.nix index 4255127b3dfe6..0245fadb171a7 100644 --- a/pkgs/applications/misc/pdf-quench/default.nix +++ b/pkgs/applications/misc/pdf-quench/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitHub, pkgs, python3, wrapGAppsHook}: +{ lib, fetchFromGitHub, pkgs, python3, wrapGAppsHook, gobject-introspection }: python3.pkgs.buildPythonApplication { pname = "pdf-quench"; @@ -11,10 +11,9 @@ python3.pkgs.buildPythonApplication { sha256 = "1rp9rlwr6rarcsxygv5x2c5psgwl6r69k0lsgribgyyla9cf2m7n"; }; - nativeBuildInputs = [ wrapGAppsHook ]; + nativeBuildInputs = [ wrapGAppsHook gobject-introspection ]; buildInputs = with pkgs; [ gtk3 - gobject-introspection goocanvas2 poppler_gi ]; diff --git a/pkgs/applications/misc/pdfpc/default.nix b/pkgs/applications/misc/pdfpc/default.nix index 9bf5907a23be1..5678cef8e1bdb 100644 --- a/pkgs/applications/misc/pdfpc/default.nix +++ b/pkgs/applications/misc/pdfpc/default.nix @@ -1,16 +1,16 @@ { lib, stdenv, fetchFromGitHub, cmake, pkg-config, vala, gtk3, libgee -, poppler, libpthreadstubs, gstreamer, gst-plugins-base, gst-plugins-good, gst-libav, librsvg, pcre, gobject-introspection, wrapGAppsHook -, webkitgtk, discount, json-glib }: +, poppler, libpthreadstubs, gstreamer, gst-plugins-base, gst-plugins-good, gst-libav, gobject-introspection, wrapGAppsHook +, qrencode, webkitgtk, discount, json-glib }: stdenv.mkDerivation rec { pname = "pdfpc"; - version = "4.5.0"; + version = "4.6.0"; src = fetchFromGitHub { repo = "pdfpc"; owner = "pdfpc"; rev = "v${version}"; - sha256 = "0bmy51w6ypz927hxwp5g7wapqvzqmsi3w32rch6i3f94kg1152ck"; + hash = "sha256-5HFmbVsNajMwo+lBe9kJcJyQGe61N6Oy2CI/WJwmSE4="; }; nativeBuildInputs = [ @@ -22,11 +22,12 @@ stdenv.mkDerivation rec { buildInputs = [ gtk3 libgee poppler - libpthreadstubs librsvg pcre + libpthreadstubs gstreamer gst-plugins-base (gst-plugins-good.override { gtkSupport = true; }) gst-libav + qrencode webkitgtk discount json-glib diff --git a/pkgs/applications/misc/pdfstudio/default.nix b/pkgs/applications/misc/pdfstudio/default.nix index b1985eed076a7..f1ce2219ba891 100644 --- a/pkgs/applications/misc/pdfstudio/default.nix +++ b/pkgs/applications/misc/pdfstudio/default.nix @@ -56,10 +56,10 @@ in pdfstudio2022 = callPackage ./common.nix rec { inherit desktopName longDescription pname program year; - version = "${year}.1.1"; + version = "${year}.1.3"; src = fetchurl { url = "https://download.qoppa.com/pdfstudio/v${year}/PDFStudio_v${dot2dash version}_linux64.deb"; - sha256 = "sha256-OPmNhnkeSvHZZbh4SaMU/vDSLrDdTmMmuSGP2HyzVm4="; + sha256 = "sha256-B3RrftuKsPWUWP9hwnq4i311hgZgwZLqG1pJLdilfQI="; }; extraBuildInputs = [ libgccjit #for libstdc++.so.6 and libgomp.so.1 diff --git a/pkgs/applications/misc/process-compose/default.nix b/pkgs/applications/misc/process-compose/default.nix index 9ae67caffb2ee..0a6c0d056685b 100644 --- a/pkgs/applications/misc/process-compose/default.nix +++ b/pkgs/applications/misc/process-compose/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "process-compose"; - version = "0.29.0"; + version = "0.29.1"; src = fetchFromGitHub { owner = "F1bonacc1"; repo = pname; rev = "v${version}"; - hash = "sha256-FxOgddgwehzrteMBjTrdksKpTR43VZV7PHI7NClZ3OU="; + hash = "sha256-FB0PjvPBfbytIXwYs+eT9PMnKX/yymrajlJ42FDlMFs="; }; ldflags = [ diff --git a/pkgs/applications/misc/slweb/default.nix b/pkgs/applications/misc/slweb/default.nix new file mode 100644 index 0000000000000..baa1a88e2d151 --- /dev/null +++ b/pkgs/applications/misc/slweb/default.nix @@ -0,0 +1,35 @@ +{ lib +, stdenv +, fetchFromSourcehut +, redo-apenwarr +}: + +stdenv.mkDerivation rec { + pname = "slweb"; + version = "0.5"; + + src = fetchFromSourcehut { + owner = "~strahinja"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-GoDumiysqIkWj2HTPQv2gheYsf4fWjtCNPFS/1R0tzc="; + }; + + nativeBuildInputs = [ redo-apenwarr ]; + + installPhase = '' + runHook preInstall + PREFIX=$out redo install + runHook postInstall + ''; + + enableParallelBuilding = true; + + meta = with lib; { + description = "A static website generator which aims at being simplistic"; + homepage = "https://strahinja.srht.site/slweb/"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ GaetanLepage ]; + }; +} diff --git a/pkgs/applications/misc/stork/default.nix b/pkgs/applications/misc/stork/default.nix index 196e35042284d..6b23e2d492c51 100644 --- a/pkgs/applications/misc/stork/default.nix +++ b/pkgs/applications/misc/stork/default.nix @@ -4,7 +4,7 @@ , openssl , pkg-config , stdenv -, darwin +, Security }: rustPlatform.buildRustPackage rec { @@ -23,15 +23,12 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ] - ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security ]; + ++ lib.optionals stdenv.isDarwin [ Security ]; meta = with lib; { description = "Impossibly fast web search, made for static sites"; homepage = "https://github.com/jameslittle230/stork"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ chuahou ]; - # TODO: Remove once nixpkgs uses macOS SDK 10.14+ for x86_64-darwin - # Undefined symbols for architecture x86_64: "_SecTrustEvaluateWithError" - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/pkgs/applications/misc/thedesk/default.nix b/pkgs/applications/misc/thedesk/default.nix index 132b205f85c12..730af1a5558b3 100644 --- a/pkgs/applications/misc/thedesk/default.nix +++ b/pkgs/applications/misc/thedesk/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "thedesk"; - version = "23.0.1"; + version = "23.0.3"; src = fetchurl { url = "https://github.com/cutls/TheDesk/releases/download/v${version}/${pname}_${version}_amd64.deb"; - sha256 = "sha256-DyaJggucFOxkrpaJSmg5fTrK8O3HA0Byd5pHwcgPSIM="; + sha256 = "sha256-X1WNfpsHRkk2UNTExn338r4pWhtC1osrCo6V8g7Pxcc="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/tippecanoe/default.nix b/pkgs/applications/misc/tippecanoe/default.nix index a11e1c5174117..bc7e5bd61fcb6 100644 --- a/pkgs/applications/misc/tippecanoe/default.nix +++ b/pkgs/applications/misc/tippecanoe/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "tippecanoe"; - version = "2.15.0"; + version = "2.16.0"; src = fetchFromGitHub { owner = "felt"; repo = "tippecanoe"; rev = finalAttrs.version; - hash = "sha256-InKVwB031BLOngcLAa1zRbgoswUb4z5I0FPNMZk9KVI="; + hash = "sha256-C0FCdCgycCh+3iG4D9HMOzx/r+MoYdJUgWL5fs8T1rU="; }; buildInputs = [ sqlite zlib ]; diff --git a/pkgs/applications/misc/tut/default.nix b/pkgs/applications/misc/tut/default.nix index cc2d9624d6fb5..b02227b8bae37 100644 --- a/pkgs/applications/misc/tut/default.nix +++ b/pkgs/applications/misc/tut/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "tut"; - version = "1.0.25"; + version = "1.0.26"; src = fetchFromGitHub { owner = "RasmusLindroth"; repo = pname; rev = version; - sha256 = "sha256-wSCT8GaBMBzxtPsspc+kS4mMVayMEBBSzXZB3dQ3Nj8="; + sha256 = "sha256-ZSlrPhCArPEVTKX7BbUfKA+hYi7TpmJbGjWmbBUwes0="; }; - vendorSha256 = "sha256-dyt7JDHsmbdMccIHVaG6N1lAwcM5xKeYoZ2Giwfkgqc="; + vendorSha256 = "sha256-PYVXEPmWgtME3XljJzyGAri/GW19PIkQpscFFRNuVXQ="; meta = with lib; { description = "A TUI for Mastodon with vim inspired keys"; diff --git a/pkgs/applications/misc/usql/default.nix b/pkgs/applications/misc/usql/default.nix index 1c619c403291a..9ad3ddff85b97 100644 --- a/pkgs/applications/misc/usql/default.nix +++ b/pkgs/applications/misc/usql/default.nix @@ -11,18 +11,18 @@ buildGoModule rec { pname = "usql"; - version = "0.13.1"; + version = "0.13.4"; src = fetchFromGitHub { owner = "xo"; repo = "usql"; rev = "v${version}"; - hash = "sha256-bdejXGyvY+HAE4sOxhsZYZ5fCISEVxvfOlEjL/CgBLQ="; + hash = "sha256-YshGqp27N1iOBWSE9UH1zsQlFar2uKf4Jq2W8kSN0Qc="; }; buildInputs = [ unixODBC icu ]; - vendorHash = "sha256-+4eRdr5MY9d0ordaDv8hZf4wGoZsp14MpOEp1vhr75w="; + vendorHash = "sha256-qHs5Z7NRdQKPOmYSozhSVQfINMxJewVwQ1Gi4SMWT+8="; proxyVendor = true; # Exclude broken impala & hive driver @@ -42,6 +42,7 @@ buildGoModule rec { "sqlite_fts5" "sqlite_introspect" "sqlite_json1" + "sqlite_math_functions" "sqlite_stat4" "sqlite_userauth" "sqlite_vtable" diff --git a/pkgs/applications/misc/wordbook/default.nix b/pkgs/applications/misc/wordbook/default.nix new file mode 100644 index 0000000000000..757fed5265f2e --- /dev/null +++ b/pkgs/applications/misc/wordbook/default.nix @@ -0,0 +1,69 @@ +{ lib +, fetchFromGitHub +, python3 +, meson +, ninja +, pkg-config +, glib +, gtk4 +, libadwaita +, librsvg +, espeak-ng +, gobject-introspection +, wrapGAppsHook4 +, appstream-glib +, desktop-file-utils +}: + +python3.pkgs.buildPythonApplication rec { + pname = "wordbook"; + version = "unstable-2022-11-02"; + format = "other"; + + src = fetchFromGitHub { + owner = "fushinari"; + repo = "Wordbook"; + rev = "2d79e9e9ef21ba4b54d0b46c764a1481a06f0f1b"; + hash = "sha256-ktusZEQ7m8P0kiH09r3XC6q9bQCWVCn543IMLKmULDo="; + }; + + nativeBuildInputs = [ + meson + ninja + pkg-config + wrapGAppsHook4 + appstream-glib + desktop-file-utils + gobject-introspection + ]; + + buildInputs = [ + glib + gtk4 + librsvg + libadwaita + ]; + + propagatedBuildInputs = with python3.pkgs; [ + pygobject3 + wn + ]; + + # prevent double wrapping + dontWrapGApps = true; + + preFixup = '' + makeWrapperArgs+=( + --prefix PATH ":" "${lib.makeBinPath [ espeak-ng ]}" + "''${gappsWrapperArgs[@]}" + ) + ''; + + meta = with lib; { + description = "Offline English-English dictionary application built for GNOME"; + homepage = "https://github.com/fushinari/Wordbook"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ zendo ]; + }; +} diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index 6136b1d7ba759..68a35cf768773 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -150,7 +150,7 @@ stdenv.mkDerivation rec { --replace /opt/brave.com $out/opt/brave.com # Correct icons location - icon_sizes=("16" "22" "24" "32" "48" "64" "128" "256") + icon_sizes=("16" "24" "32" "48" "64" "128" "256") for icon in ''${icon_sizes[*]} do diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index c275ce7459712..96952bebf97b2 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,985 +1,985 @@ { - version = "108.0b9"; + version = "109.0b6"; sources = [ - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ach/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ach/firefox-109.0b6.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "4857f419269bb21e8470a2717f11b6d3c47591f870e6b42afc81ebd5d642d281"; + sha256 = "76b65d1590e9cda011579e09ad84e0c6a9cab8cb3d5134471aa56a85fe3ae2de"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/af/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/af/firefox-109.0b6.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "da4439d94b52ffd6f77e028bb135b6b3aef2211cec38d71e71a7d45016401830"; + sha256 = "85ae096397e6ea6e798ac5e9a86033f102b5c4bc414fd254cb13929b859db92c"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/an/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/an/firefox-109.0b6.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "7cde9490ea9fe38b6b28c044036d2b2fced37ac6fe0f0eb76ffcff2a20ff5d8c"; + sha256 = "e95f579d3f614a6a377ef46fbc8965cebfd4ea887f27f84f76bc0f1c53b14fc5"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ar/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ar/firefox-109.0b6.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "4994347e131313e153d8cbf60f5856250521543f804a12fcb873522a6b10f920"; + sha256 = "6a9ba4e50bc8b98dbbe3362743639ab60594f4b2d2ac85ffe26156b4826e59c6"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ast/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ast/firefox-109.0b6.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "d580c63861484481ae8e499cd1ab1c07dd9dd7e1e4ddcb6289d2afd08539716e"; + sha256 = "62850d7abf809b64c7248060fceea9c83995db8ebcc5e835b08a530bd0a15a66"; 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locale = "szl"; arch = "linux-i686"; - sha256 = "2b9674b7a6e564e33d5e1e49549d1d7997c6b4bf29869f8418154b4c53aab38e"; + sha256 = "155940dda7606994e95484062a20f61da15a73b2bf2dab86a2bc6c141dfed798"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/ta/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/ta/firefox-109.0b6.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha256 = "8c6d779f4f009de0dd246c85f40c3fada761536afdb8f93e1858cda16a7cbd29"; + sha256 = "ca5d2f0f8c9267341df12df097102fdff2f74c216fa97fc63a9a44b321e42f96"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/te/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/te/firefox-109.0b6.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha256 = "4460e1ef8cdfae255d00d7d0ee5b440ff9ca11e533c96053de143f9db3fbf923"; + sha256 = "e223580ff3427d4eb67b19be8ac3447139fd741f05dcf964d718a3d2afed5539"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/th/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/th/firefox-109.0b6.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "ec66faf638b3f75840dfbdc3fd4354903776b11757e16abe8127fe62f5e50091"; + sha256 = "26e6fd7e103715499f453b61c83dc0eac4d3cb19aa6c52a881a72f75e97a60df"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/tl/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/tl/firefox-109.0b6.tar.bz2"; locale = "tl"; arch = "linux-i686"; - sha256 = "e6b2db561eb5e8306dcf7efb55fa288d8e53fea92ea6053d452d32e033f9ba3a"; + sha256 = "96a401a95f3d4b69ebedb1b6cc3a49f77c7c40f4c7d7558319f65ae715e50e8c"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/tr/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/tr/firefox-109.0b6.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "adae4dfc2f88e9c466b77b02e6ce25f4312a5ffafe3ceefc4b463468bc2c5e90"; + sha256 = "0d71a867ffbb5d398cbe8845f8c1cfdae5a6a2d2376f516b833f576dd018d3ab"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/trs/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/trs/firefox-109.0b6.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "293cf639806063f11ded14807a8533bab9b3e8c5af9dfdfd2805c6517cf72554"; + sha256 = "5033544bcc9eb29613f46429792f186a6ee678618f3c08b77cabee90bce0bbcd"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/uk/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/uk/firefox-109.0b6.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "01c80c2c187f57b1877e483ad1e10cb0fbcfba27e87673945a0af042c249157e"; + sha256 = "b21c551502c21a048751bdbbaa77700dfb572a5a43f45476eadc138357855bd8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/ur/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/ur/firefox-109.0b6.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha256 = "f3f7623ed6aaaac4ed49d8245a2ceb1542be73d3b31a977fbaf87bc74b48e053"; + sha256 = "e970d58372693c64399c8114ecdbfe5abbeae62ce1adb5d2372050f6e991ccd0"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/uz/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/uz/firefox-109.0b6.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "486595f8dc269f1fb80fe421fa5d29774d4045b3b080b392ae0267c0503b53f8"; + sha256 = "2b789b1b5cabe05313838cc19540c2722b018dafac6912fe923d980bb5fd06a8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/vi/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/vi/firefox-109.0b6.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "5fc34ad937c733b7dc00f809ad83a1b3a5cccfd0d77edb885703751ca510a3d0"; + sha256 = "574728df151fbd88a2588c2958ca877041ce88b9144492e4d1e237f6b964e8c7"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/xh/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/xh/firefox-109.0b6.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "2706ee7d95ecf2f5b99da42fb3b47fce1aa6a0afa408e70a7382034c14499a2b"; + sha256 = "6ca7acaf782fd34feaa3c27a87b38dcd5c59e3dda3ca1a97b9815b0b41f393db"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/zh-CN/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/zh-CN/firefox-109.0b6.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "0175228eef8d3b12071bc6ed3b5c965cb36da8a30395ba288bd19bc60135a3e4"; + sha256 = "10322f94dc986f9f06256387d862718b3c3145ce019deef0ba6020aea1679fe2"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/zh-TW/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/zh-TW/firefox-109.0b6.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "4ed84db9ba1fa41148a39244c7feaf6ad93d52d97a8c5885df835456ec66c184"; + sha256 = "409c4d71e3a2750fc34bac6c3e596b237e076d26975a6f38e6aa5dce0e70f9e4"; } ]; } diff --git a/pkgs/applications/networking/cloudflared/default.nix b/pkgs/applications/networking/cloudflared/default.nix index 3930a2d4879bd..e2cc376af297b 100644 --- a/pkgs/applications/networking/cloudflared/default.nix +++ b/pkgs/applications/networking/cloudflared/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "cloudflared"; - version = "2022.11.1"; + version = "2022.12.1"; src = fetchFromGitHub { owner = "cloudflare"; repo = "cloudflared"; rev = version; - hash = "sha256-aG63CEJfEL9r0SviZu9VzArtt3e4VuAbOMaYk9atSGo="; + hash = "sha256-FXN/UUlzG3+AYYZeKJ6XUG4rD3cPWIx22h3zZpvZhiM="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/argocd/default.nix b/pkgs/applications/networking/cluster/argocd/default.nix index 3fce464f4447f..e0908437803a7 100644 --- a/pkgs/applications/networking/cluster/argocd/default.nix +++ b/pkgs/applications/networking/cluster/argocd/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "argocd"; - version = "2.5.4"; + version = "2.5.5"; src = fetchFromGitHub { owner = "argoproj"; repo = "argo-cd"; rev = "v${version}"; - sha256 = "sha256-Wwm9YN/gPsb4AU+JFUDrJQbuK5AEqzX5/D64/6tOtkw="; + sha256 = "sha256-u9VOkUaKQAdlXhCUUONBws4rW6PvxFSNXbit7gi6/P0="; }; proxyVendor = true; # darwin/linux hash mismatch diff --git a/pkgs/applications/networking/cluster/fluxcd/default.nix b/pkgs/applications/networking/cluster/fluxcd/default.nix index c9d3f778b5545..0b5f01654c501 100644 --- a/pkgs/applications/networking/cluster/fluxcd/default.nix +++ b/pkgs/applications/networking/cluster/fluxcd/default.nix @@ -1,9 +1,9 @@ { lib, buildGoModule, fetchFromGitHub, fetchzip, installShellFiles, stdenv }: let - version = "0.37.0"; - sha256 = "10f0k6k02n981vf0bjh70qf4kdax2qc40ld278p7mrsqri38r1q9"; - manifestsSha256 = "0srg7184sb1brxj8kzzf0ilmx5ym96h78v919xcmbdd6v4f2ycy9"; + version = "0.38.2"; + sha256 = "1fr3jg9j0hrnr55wh40d0lli593pid1vqnbgnw9wxqsv6677dh53"; + manifestsSha256 = "1dmp7gdnwbg4jjc3dq1wp2jn3z3g6lm296b1nf24ndcfmjja58cz"; manifests = fetchzip { url = @@ -23,7 +23,7 @@ in buildGoModule rec { inherit sha256; }; - vendorSha256 = "sha256-zB7Fo+Lw0+hWuzkYLDb9I+swhm9kGfjYNkU96hF6QTg="; + vendorSha256 = "sha256-aPkuP6FVIkMAJi+wwNfgvxXi+PE1mMUXfxz44/R31KI="; postUnpack = '' cp -r ${manifests} source/cmd/flux/manifests diff --git a/pkgs/applications/networking/cluster/glooctl/default.nix b/pkgs/applications/networking/cluster/glooctl/default.nix index 0728a03e976b8..de9f2e78f9616 100644 --- a/pkgs/applications/networking/cluster/glooctl/default.nix +++ b/pkgs/applications/networking/cluster/glooctl/default.nix @@ -2,17 +2,17 @@ buildGoModule rec { pname = "glooctl"; - version = "1.12.33"; + version = "1.12.37"; src = fetchFromGitHub { owner = "solo-io"; repo = "gloo"; rev = "v${version}"; - hash = "sha256-T/fkQxRcwDYppGpAu1sBg8Oe8dAa4Bk/jt4jYMikPBE="; + hash = "sha256-3dm60ySi/IdiAzZ+LWMLwxUJRv2HX0tQR5s+XMFqyGg="; }; subPackages = [ "projects/gloo/cli/cmd" ]; - vendorSha256 = "sha256-G26BfTdXMQP0U4FDRYkJNfUOGfqow714WPNBnBrXLZQ="; + vendorSha256 = "sha256-b4Nl6uuZmcbxht4IRupyzQJL/o8nj4fIUuHvlHZWYTU="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/k0sctl/default.nix b/pkgs/applications/networking/cluster/k0sctl/default.nix index 5f19d55b5b31e..986832658825e 100644 --- a/pkgs/applications/networking/cluster/k0sctl/default.nix +++ b/pkgs/applications/networking/cluster/k0sctl/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "k0sctl"; - version = "0.14.0"; + version = "0.15.0"; src = fetchFromGitHub { owner = "k0sproject"; repo = pname; rev = "v${version}"; - sha256 = "sha256-m0BdmsqmkB3Q6JzzRPS6Tq68a33heUifY2EgTjbAm3M="; + sha256 = "sha256-i/XgEPuYNxn10eOXfF+X33oLlkO9r6daeygZcSdcicQ="; }; - vendorSha256 = "sha256-CZ8DmgYXQcpd43qm6YsVHFePuUochHgJG7/ffEK8LL8="; + vendorSha256 = "sha256-RTC2AEDzSafvJT/vuPjzs25PhuzBiPb32an/a/wpY04="; ldflags = [ "-s" diff --git a/pkgs/applications/networking/cluster/k3sup/default.nix b/pkgs/applications/networking/cluster/k3sup/default.nix index a866c9c859063..555f1e69c1794 100644 --- a/pkgs/applications/networking/cluster/k3sup/default.nix +++ b/pkgs/applications/networking/cluster/k3sup/default.nix @@ -9,13 +9,13 @@ buildGoModule rec { pname = "k3sup"; - version = "0.12.11"; + version = "0.12.12"; src = fetchFromGitHub { owner = "alexellis"; repo = "k3sup"; rev = version; - sha256 = "sha256-SwbOXPpW4pQXZNYWkEmLl5ax2P+tjcoVTOV23fCigtk="; + sha256 = "sha256-Fp52PL0oNqpvisiLLqZ+iQ4RSzLaL3UH7S/CAR5h9LA="; }; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/kubebuilder/default.nix b/pkgs/applications/networking/cluster/kubebuilder/default.nix index dd6e71a58abe3..df1e6ab788823 100644 --- a/pkgs/applications/networking/cluster/kubebuilder/default.nix +++ b/pkgs/applications/networking/cluster/kubebuilder/default.nix @@ -12,16 +12,16 @@ buildGoModule rec { pname = "kubebuilder"; - version = "3.7.0"; + version = "3.8.0"; src = fetchFromGitHub { owner = "kubernetes-sigs"; repo = "kubebuilder"; rev = "v${version}"; - sha256 = "sha256-nLjmz9OakBLTBWdYA6czgtJmCuP96abNwLcLZo+yZ48="; + hash = "sha256-UTzQyr5N8CButeLKYZs9a8hAV/cezVfLLQ7b4YJQzXU="; }; - vendorSha256 = "sha256-xljLDwubwr6rZ/ZpW9/WithClaMo88ivlBhWFb0iAvo="; + vendorHash = "sha256-VvCM0aBk0SnnXVPZRvEGcb1Bl4Uunbc4u1KzukYMGqA="; subPackages = ["cmd"]; @@ -61,6 +61,7 @@ buildGoModule rec { meta = with lib; { description = "SDK for building Kubernetes APIs using CRDs"; homepage = "https://github.com/kubernetes-sigs/kubebuilder"; + changelog = "https://github.com/kubernetes-sigs/kubebuilder/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ cmars ]; }; diff --git a/pkgs/applications/networking/cluster/kyverno/default.nix b/pkgs/applications/networking/cluster/kyverno/default.nix index f0bc32f9be39a..53da8b9be29fd 100644 --- a/pkgs/applications/networking/cluster/kyverno/default.nix +++ b/pkgs/applications/networking/cluster/kyverno/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kyverno"; - version = "1.8.4"; + version = "1.8.5"; src = fetchFromGitHub { owner = "kyverno"; repo = "kyverno"; rev = "v${version}"; - sha256 = "sha256-VAKT1gw8wkfde/rQVvRzq4HH0mKcLczR5EHtxy3zULg="; + sha256 = "sha256-oEy1SNlYHDuZG2urbXEfROwzfNzdbu0Yjsq98Dw+Mws="; }; ldflags = [ diff --git a/pkgs/applications/networking/cluster/linkerd/default.nix b/pkgs/applications/networking/cluster/linkerd/default.nix index 83d75d7d189ac..896c2ac5a0164 100644 --- a/pkgs/applications/networking/cluster/linkerd/default.nix +++ b/pkgs/applications/networking/cluster/linkerd/default.nix @@ -2,7 +2,7 @@ (callPackage ./generic.nix { }) { channel = "stable"; - version = "2.12.0"; - sha256 = "0p8k5c0gzpmqp7qrhfcjrhbgwd2mzsn2qpsv7ym0ywjkvrkg3355"; - vendorSha256 = "sha256-qjXpzS1ctEQfXFjzyBUiIp6+oqABedpwHqDxQz0DJ8U="; + version = "2.12.3"; + sha256 = "01vnqhn5lc4pv1rgwmmzzf7ynqc4ss0jysqhjq0m5yzll2k40d8z"; + vendorSha256 = "sha256-7CkeWbgiQIKhuCrJErZrkkx0MD41qxaWAY/18VafLZE="; } diff --git a/pkgs/applications/networking/cluster/nixops/default.nix b/pkgs/applications/networking/cluster/nixops/default.nix index 35a5a9591c2f3..5635d6ab2745e 100644 --- a/pkgs/applications/networking/cluster/nixops/default.nix +++ b/pkgs/applications/networking/cluster/nixops/default.nix @@ -90,6 +90,7 @@ let ps.nixops-hetzner ps.nixopsvbox ps.nixops-virtd + ps.nixops-hetznercloud ]) // rec { # Workaround for https://github.com/NixOS/nixpkgs/issues/119407 # TODO after #1199407: Use .overrideAttrs(pkg: old: { passthru.tests = .....; }) diff --git a/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix b/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix index 7166c3ac288ab..8c47fde8bb7be 100644 --- a/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix +++ b/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix @@ -71,6 +71,16 @@ self: super: { } ); + nixops-hetznercloud = super.nixops-hetznercloud.overridePythonAttrs ( + _: { + src = pkgs.fetchgit { + url = "https://github.com/lukebfox/nixops-hetznercloud.git"; + rev = "386f8b7cfe724308a9c1e97e76d238498a279495"; + sha256 = "0ig9maxcprxvz0fgriyzgcqz990s1pspizzsqj7x3xg0w0dpx853"; + }; + } + ); + nixops-virtd = super.nixops-virtd.overridePythonAttrs ( _: { src = pkgs.fetchgit { diff --git a/pkgs/applications/networking/cluster/nixops/poetry.lock b/pkgs/applications/networking/cluster/nixops/poetry.lock index 56405bc1460ef..134dec79feb2b 100644 --- a/pkgs/applications/networking/cluster/nixops/poetry.lock +++ b/pkgs/applications/networking/cluster/nixops/poetry.lock @@ -1,10 +1,16 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + [[package]] name = "apache-libcloud" -version = "3.6.0" +version = "3.6.1" description = "A standard Python library that abstracts away differences among multiple cloud provider APIs. For more information and documentation, please see https://libcloud.apache.org" category = "main" optional = false python-versions = ">=3.6, <4" +files = [ + {file = "apache-libcloud-3.6.1.tar.gz", hash = "sha256:0facf3206568430c998da40e9bbac6d3a0c4fc80dd51674d9e794b381450120c"}, + {file = "apache_libcloud-3.6.1-py2.py3-none-any.whl", hash = "sha256:d01eee601b6367e711788c47a275ee717f23854f5267d9ba3b3e8ed3bb400e56"}, +] [package.dependencies] requests = ">=2.26.0" @@ -16,17 +22,25 @@ description = "Amazon Web Services Library" category = "main" optional = false python-versions = "*" +files = [ + {file = "boto-2.49.0-py2.py3-none-any.whl", hash = "sha256:147758d41ae7240dc989f0039f27da8ca0d53734be0eb869ef16e3adcfa462e8"}, + {file = "boto-2.49.0.tar.gz", hash = "sha256:ea0d3b40a2d852767be77ca343b58a9e3a4b00d9db440efb8da74b4e58025e5a"}, +] [[package]] name = "boto3" -version = "1.24.88" +version = "1.26.32" description = "The AWS SDK for Python" category = "main" optional = false 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"sha256:107854fde1aafa21774e8053cf253b04173613c94531f75d5a039ad770562b24"}, - {file = "python_digitalocean-1.17.0-py3-none-any.whl", hash = "sha256:0032168e022e85fca314eb3f8dfaabf82087f2ed40839eb28f1eeeeca5afb1fa"}, -] -requests = [ - {file = "requests-2.28.1-py3-none-any.whl", hash = "sha256:8fefa2a1a1365bf5520aac41836fbee479da67864514bdb821f31ce07ce65349"}, - {file = "requests-2.28.1.tar.gz", hash = "sha256:7c5599b102feddaa661c826c56ab4fee28bfd17f5abca1ebbe3e7f19d7c97983"}, -] -s3transfer = [ - {file = "s3transfer-0.6.0-py3-none-any.whl", hash = "sha256:06176b74f3a15f61f1b4f25a1fc29a4429040b7647133a463da8fa5bd28d5ecd"}, - {file = "s3transfer-0.6.0.tar.gz", hash = "sha256:2ed07d3866f523cc561bf4a00fc5535827981b117dd7876f036b0c1aca42c947"}, -] -six = [ - {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"}, - {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"}, -] -typeguard = [ - {file = "typeguard-2.13.3-py3-none-any.whl", hash = "sha256:5e3e3be01e887e7eafae5af63d1f36c849aaa94e3a0112097312aabfa16284f1"}, - {file = "typeguard-2.13.3.tar.gz", hash = "sha256:00edaa8da3a133674796cf5ea87d9f4b4c367d77476e185e80251cc13dfbb8c4"}, -] -typing-extensions = [ - {file = "typing_extensions-3.10.0.2-py2-none-any.whl", hash = "sha256:d8226d10bc02a29bcc81df19a26e56a9647f8b0a6d4a83924139f4a8b01f17b7"}, - {file = "typing_extensions-3.10.0.2-py3-none-any.whl", hash = "sha256:f1d25edafde516b146ecd0613dabcc61409817af4766fbbcfb8d1ad4ec441a34"}, - {file = "typing_extensions-3.10.0.2.tar.gz", hash = "sha256:49f75d16ff11f1cd258e1b988ccff82a3ca5570217d7ad8c5f48205dd99a677e"}, -] -urllib3 = [ - {file = "urllib3-1.26.12-py2.py3-none-any.whl", hash = "sha256:b930dd878d5a8afb066a637fbb35144fe7901e3b209d1cd4f524bd0e9deee997"}, - {file = "urllib3-1.26.12.tar.gz", hash = "sha256:3fa96cf423e6987997fc326ae8df396db2a8b7c667747d47ddd8ecba91f4a74e"}, -] +content-hash = "e58721318221aacb55ace3d0df65d71382f20147367dfa1466b59a13bda564b4" diff --git a/pkgs/applications/networking/cluster/nixops/pyproject.toml b/pkgs/applications/networking/cluster/nixops/pyproject.toml index 2f1132a51bc9f..31afcfb408c06 100644 --- a/pkgs/applications/networking/cluster/nixops/pyproject.toml +++ b/pkgs/applications/networking/cluster/nixops/pyproject.toml @@ -13,6 +13,7 @@ nixops-encrypted-links = {git = "https://github.com/nix-community/nixops-encrypt nixops-gcp = {git = "https://github.com/nix-community/nixops-gce.git"} nixops-hercules-ci = {git = "https://github.com/hercules-ci/nixops-hercules-ci.git"} nixops-hetzner = {git = "https://github.com/NixOS/nixops-hetzner"} +nixops-hetznercloud = {git = "https://github.com/lukebfox/nixops-hetznercloud.git"} nixopsvbox = {git = "https://github.com/nix-community/nixops-vbox.git"} nixops-virtd = {git = "https://github.com/nix-community/nixops-libvirtd.git"} diff --git a/pkgs/applications/networking/cluster/ocm/default.nix b/pkgs/applications/networking/cluster/ocm/default.nix index 46fdeef2ac83f..4c4ececb71efc 100644 --- a/pkgs/applications/networking/cluster/ocm/default.nix +++ b/pkgs/applications/networking/cluster/ocm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "ocm"; - version = "0.1.64"; + version = "0.1.65"; src = fetchFromGitHub { owner = "openshift-online"; repo = "ocm-cli"; rev = "v${version}"; - sha256 = "sha256-RMXiEXgf8tAdp2d97kaOzXgFCFVkaMhkJF8AHXIEJm8="; + sha256 = "sha256-UzHGVK/HZ5eH8nO4+G92NunOQi9AWnqv4vgcHjtoPDw="; }; - vendorSha256 = "sha256-4m5Ej2Ql9+wGqrzvXQkY8fL2I9tYE6Tm6s9+qcZBHQI="; + vendorSha256 = "sha256-4pqXap1WayqdXuwwLktE71D7x6Ao9MkIKSzIKtVyP84="; # Strip the final binary. ldflags = [ "-s" "-w" ]; diff --git a/pkgs/applications/networking/cluster/odo/default.nix b/pkgs/applications/networking/cluster/odo/default.nix index ac5342bb29d2e..ba982fd83b0c5 100644 --- a/pkgs/applications/networking/cluster/odo/default.nix +++ b/pkgs/applications/networking/cluster/odo/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "odo"; - version = "3.3.0"; + version = "3.4.0"; src = fetchFromGitHub { owner = "redhat-developer"; repo = "odo"; rev = "v${version}"; - sha256 = "sha256-Np2O3mO9wBxDcCHG8/zMdIU2N+3RNRT2SN3kh7+l2Nc="; + sha256 = "sha256-UXeSerVtskEloH60vNom8H6/gEy7adUnBsc/5q7wrDM="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/pachyderm/default.nix b/pkgs/applications/networking/cluster/pachyderm/default.nix index eb68de91c233b..a7544e50b3803 100644 --- a/pkgs/applications/networking/cluster/pachyderm/default.nix +++ b/pkgs/applications/networking/cluster/pachyderm/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "pachyderm"; - version = "2.4.1"; + version = "2.4.2"; src = fetchFromGitHub { owner = "pachyderm"; repo = "pachyderm"; rev = "v${version}"; - hash = "sha256-hU1Li3ZTgCbvyfBQ7TcmmeXOfcb1DHeo/K7iT7vc+vE="; + hash = "sha256-IzZBs6g6MQKofhMIdLr7ty7HzwF+SoyzCJ6RDMHt0mo="; }; vendorHash = "sha256-j7zg0vIhdYbzyi4owdVEF4XyUNwGds6J01+3k5K90Yg="; diff --git a/pkgs/applications/networking/cluster/sonobuoy/default.nix b/pkgs/applications/networking/cluster/sonobuoy/default.nix index ae7753d758a88..b558a7ff0b543 100644 --- a/pkgs/applications/networking/cluster/sonobuoy/default.nix +++ b/pkgs/applications/networking/cluster/sonobuoy/default.nix @@ -1,11 +1,11 @@ { lib, buildGoModule, fetchFromGitHub }: # SHA of ${version} for the tool's help output. Unfortunately this is needed in build flags. -let rev = "5b97033257d0276c7b0d1b20412667a69d79261e"; +let rev = "bd5465d6b2b2b92b517f4c6074008d22338ff509"; in buildGoModule rec { pname = "sonobuoy"; - version = "0.56.13"; # Do not forget to update `rev` above + version = "0.56.14"; # Do not forget to update `rev` above ldflags = let t = "github.com/vmware-tanzu/sonobuoy"; @@ -20,10 +20,10 @@ buildGoModule rec { owner = "vmware-tanzu"; repo = "sonobuoy"; rev = "v${version}"; - sha256 = "sha256-T0G0S8bj0QO1/eC/XMwiJ0ZcJC6KYB6gmj/bq2yYgAE="; + sha256 = "sha256-YiVCdAdwdK9PcQ6VQQNAjLQq2X54vJmZfbHRjV2d8VQ="; }; - vendorSha256 = "sha256-SRR4TmNHbMOOMv6AXv/Qpn2KUQh+ZsFlzc5DpdyPLEU="; + vendorSha256 = "sha256-Fqxkyl9AKZ7H4QSp2V/yztpeXHt57+LjpzzGtOPndX0="; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/cluster/talosctl/default.nix b/pkgs/applications/networking/cluster/talosctl/default.nix index 93f6f97a6a39e..fcd2ef9fb5bea 100644 --- a/pkgs/applications/networking/cluster/talosctl/default.nix +++ b/pkgs/applications/networking/cluster/talosctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "talosctl"; - version = "1.2.7"; + version = "1.2.8"; src = fetchFromGitHub { owner = "siderolabs"; repo = "talos"; rev = "v${version}"; - sha256 = "sha256-AQTBiHlaVFV1fvZ278DYf2XnktnLNa1Hb4qS2D2r/fM="; + sha256 = "sha256-5oleIRJHEmIOXLXwBuklY16WhkePAokPGDfcPoxOUo0="; }; - vendorSha256 = "sha256-GKDhqIfYmPwbxt+hId3Axr64xOTXkLklZzNYWDo9SG8="; + vendorSha256 = "sha256-+jKbBWDBNgDYf6Ka69NqHzB2KAwKIDJWZpjXl3aylBA="; ldflags = [ "-s" "-w" ]; diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix index be2529f087207..60e12f1198c6b 100644 --- a/pkgs/applications/networking/cluster/terragrunt/default.nix +++ b/pkgs/applications/networking/cluster/terragrunt/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "terragrunt"; - version = "0.42.4"; + version = "0.42.5"; src = fetchFromGitHub { owner = "gruntwork-io"; repo = pname; rev = "v${version}"; - sha256 = "sha256-PaCI39Z2WaHZ6IYRxFNZvG9c40pWzNbwoHrJFXLOqMk="; + sha256 = "sha256-hF40Tb9NND8az9zOOvh9w/VyjbpVlKqnMT7J9oDJjBM="; }; vendorSha256 = "sha256-ByFn2j2m5dON0No6mt1QiYm4vMRSymS5Tezaws9B9c4="; diff --git a/pkgs/applications/networking/cluster/waypoint/default.nix b/pkgs/applications/networking/cluster/waypoint/default.nix index 36718608d420f..e6f6bc1511756 100644 --- a/pkgs/applications/networking/cluster/waypoint/default.nix +++ b/pkgs/applications/networking/cluster/waypoint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "waypoint"; - version = "0.10.4"; + version = "0.10.5"; src = fetchFromGitHub { owner = "hashicorp"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jbrzXktY1vGk1DuzrzxlWwFQoFPprnDy2YjZQBgmcPI="; + sha256 = "sha256-oUzWBFoBRwQynWubBzR9xNIyqRXTsH0R+OCyIDz0a9s="; }; - vendorSha256 = "sha256-oTzGgyQZWNj7vNpAaDO47nB7EbpUiQD66u4F1LJ2CR0="; + vendorSha256 = "sha256-rmDxO1tfpCUh5TXsSmf3DMIqB0NQHuCyizZmnaoZox0="; nativeBuildInputs = [ go-bindata installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/werf/default.nix b/pkgs/applications/networking/cluster/werf/default.nix index f1137e231c0a6..b1a7727207750 100644 --- a/pkgs/applications/networking/cluster/werf/default.nix +++ b/pkgs/applications/networking/cluster/werf/default.nix @@ -10,13 +10,13 @@ buildGoModule rec { pname = "werf"; - version = "1.2.191"; + version = "1.2.193"; src = fetchFromGitHub { owner = "werf"; repo = "werf"; rev = "v${version}"; - hash = "sha256-MNIHY3bswPGd8hhR0/9ZxifSv+/kWvLmNESqYRVPao8="; + hash = "sha256-4q+LtPwJa3gioOY90gUfCL4F/8jmtfkBKxBShg2xQas="; }; vendorHash = "sha256-GjcmpHyjhjCWE5gQR/oTHfhHYg5WRu8uhgAuWhdxlYk="; diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix index 9bd2c90d24f8a..665af1cf2eadc 100644 --- a/pkgs/applications/networking/flexget/default.nix +++ b/pkgs/applications/networking/flexget/default.nix @@ -5,7 +5,7 @@ python3Packages.buildPythonApplication rec { pname = "flexget"; - version = "3.5.12"; + version = "3.5.13"; format = "pyproject"; # Fetch from GitHub in order to use `requirements.in` @@ -13,7 +13,7 @@ python3Packages.buildPythonApplication rec { owner = "flexget"; repo = "flexget"; rev = "refs/tags/v${version}"; - hash = "sha256-nrW6+BhcDvFt7bw0XdiDk2eNnM+ut24xTdPulNDw9X4="; + hash = "sha256-0yO4prnYJkD7eiyrEOPHlDTsgGgRhQujsp8k2FsLYKI="; }; postPatch = '' diff --git a/pkgs/applications/networking/ids/suricata/default.nix b/pkgs/applications/networking/ids/suricata/default.nix index f2f850556849a..49b88c9fd680c 100644 --- a/pkgs/applications/networking/ids/suricata/default.nix +++ b/pkgs/applications/networking/ids/suricata/default.nix @@ -34,11 +34,11 @@ in stdenv.mkDerivation rec { pname = "suricata"; - version = "6.0.6"; + version = "6.0.8"; src = fetchurl { url = "https://www.openinfosecfoundation.org/download/${pname}-${version}.tar.gz"; - sha256 = "sha256-ABc2NPp2ruY244qQscAmFskD5CFzEH1HtBFJYLX76Dk="; + sha256 = "sha256-JTzjzA35Z62TcdbqjU7tkexZPfPtBOCCKcfPhXgMkaM="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/alfaview/default.nix b/pkgs/applications/networking/instant-messengers/alfaview/default.nix index 87e96f7b622f8..c9b2c4a21280c 100644 --- a/pkgs/applications/networking/instant-messengers/alfaview/default.nix +++ b/pkgs/applications/networking/instant-messengers/alfaview/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "alfaview"; - version = "8.57.0"; + version = "8.58.2"; src = fetchurl { url = "https://production-alfaview-assets.alfaview.com/stable/linux/${pname}_${version}.deb"; - sha256 = "sha256-xYHi+lOONE2cxEcuuN2bWh5kF5fcfCNq2GII792IGro="; + sha256 = "sha256-z6GjIR9K4OWFuQTGBbP05aYFNa2sD1UW4e/GW01xj78="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/chatty/default.nix b/pkgs/applications/networking/instant-messengers/chatty/default.nix index 541bcc72f5ac1..e98bbeb4d307c 100644 --- a/pkgs/applications/networking/instant-messengers/chatty/default.nix +++ b/pkgs/applications/networking/instant-messengers/chatty/default.nix @@ -29,16 +29,15 @@ stdenv.mkDerivation rec { pname = "chatty"; - version = "unstable-2022-09-20"; + version = "0.7.0_rc4"; src = fetchFromGitLab { domain = "source.puri.sm"; owner = "Librem5"; repo = "chatty"; - # https://source.puri.sm/Librem5/chatty/-/tree/247c53fd990f7472ddd1a92c2f9e1299ae3ef4e4 - rev = "247c53fd990f7472ddd1a92c2f9e1299ae3ef4e4"; + rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-9hgQC0vLmmJJxrBWTdTIrJbSSwLS23uVoJri2ieCj4E="; + hash = "sha256-/8Y82PYlR9ucnT7/BsUk+STmsftpUvSNJM3cwG+Iv/A="; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix b/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix index 8fc36454310e2..eb4be8d98d279 100644 --- a/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix @@ -21,17 +21,17 @@ let libdeltachat' = libdeltachat.overrideAttrs (old: rec { - version = "1.102.0"; + version = "1.104.0"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = version; - hash = "sha256-xw/lUNs39nkBrydpcgUBL3j6XrZFafKslxx6zUiElWw="; + hash = "sha256-+FQ6XE+CtvSNSgpEr8h0mcr9DCC6TvGgLrYGdw0Ve2o="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${old.pname}-${version}"; - hash = "sha256-CiqYKFABHcFSjYUH/qop1xWCoygQJajI7nhv04ElD10="; + hash = "sha256-c3tt+nYZksI/VhJk4bNHu9ZXeDTaA2aLAQo1BmuF+2g="; }; }); esbuild' = esbuild.override { @@ -48,16 +48,16 @@ let }; in buildNpmPackage rec { pname = "deltachat-desktop"; - version = "1.34.0"; + version = "1.34.1"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-desktop"; rev = "v${version}"; - hash = "sha256-M2ZLWaxVq9PvxJemwv+7jd0cXKQb6T5VCyLvIRF+9d0="; + hash = "sha256-/F1fU54eTM9mUaQe/Ex9DnTDb+fzl/1HNyYvLWE2BBU="; }; - npmDepsHash = "sha256-wCsPKEgRpPsNmM0HzvS5QjlPnw8COPrOhQRIf+vYeig="; + npmDepsHash = "sha256-3wzN7G27IGTlFZUE9RzQXfApVfaTc92Sbb+jjH/zeoc="; nativeBuildInputs = [ makeWrapper diff --git a/pkgs/applications/networking/instant-messengers/element/pin.json b/pkgs/applications/networking/instant-messengers/element/pin.json index c92532b74b823..64a164c9b01ed 100644 --- a/pkgs/applications/networking/instant-messengers/element/pin.json +++ b/pkgs/applications/networking/instant-messengers/element/pin.json @@ -1,7 +1,7 @@ { - "version": "1.11.16", - "desktopSrcHash": "EeED62HRpaWN91yxcDvwwNUWmDRU38lyT5ba1S4go6Q=", - "desktopYarnHash": "1f0bghcbzab2dkvxmvhhc0dzyk3js09v2sh93gsjsq9mkhld1k0w", - "webSrcHash": "T6UcGNm4i+Nc4Yk/mVFc4L9jxWQtOpjps1ZtEhilHW0=", - "webYarnHash": "1jyzym34lzadniqrysbm1m5agw03hzw6ymmdxpbay38afrhrciyk" + "version": "1.11.17", + "desktopSrcHash": "VB7p/ThiwphcCd3loSwQ61TthR2ji0nX6l32Jrgv/NE=", + "desktopYarnHash": "15jsznsqxvi1bs26pmb7zfrybl071k3g3g6i0pm34mzs2r9nvrii", + "webSrcHash": "YeXsDyyoQnWNDnfx/7fMHooi48ST+LiA5ACy0gBnQaQ=", + "webYarnHash": "1zniyg869glhajcmcgq34qwmhb4jq2hbjqhhz6a79p892yx97chp" } diff --git a/pkgs/applications/networking/instant-messengers/signal-cli/default.nix b/pkgs/applications/networking/instant-messengers/signal-cli/default.nix index d102e144c521d..f8037e1ef47cb 100644 --- a/pkgs/applications/networking/instant-messengers/signal-cli/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-cli/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "signal-cli"; - version = "0.11.5.1"; + version = "0.11.6"; # Building from source would be preferred, but is much more involved. src = fetchurl { url = "https://github.com/AsamK/signal-cli/releases/download/v${version}/signal-cli-${version}-Linux.tar.gz"; - sha256 = "sha256-VHQz7FlEugTv5gJrJr5WLdYHkoQ6lTlUP3JVy20j1mM="; + hash = "sha256-DWG67Jr2hDas1aL5Q+9MUjNKNLFpOFLsehYbJfy/rzg="; }; buildInputs = lib.optionals stdenv.isLinux [ libmatthew_java dbus dbus_java ]; diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix index 7c4b95a06459d..6fdc64adc135a 100644 --- a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix @@ -23,13 +23,13 @@ let pname = "wire-desktop"; version = { - x86_64-darwin = "3.29.4477"; - x86_64-linux = "3.29.2997"; + x86_64-darwin = "3.30.4506"; + x86_64-linux = "3.30.3018"; }.${system} or throwSystem; - sha256 = { - x86_64-darwin = "19snbd53hjfcqgnz24r85a34fr120b1wps4pv4vymnkxjld2wifc"; - x86_64-linux = "0f5kkp93za4yr6ywdgph8zr6ivrbxq2gbskl8jysxawk1pz92pqf"; + hash = { + x86_64-darwin = "sha256-+htDeNIuucB4qzNBNYoSUH1DbfgouZS08G5hxPtIuzY="; + x86_64-linux = "sha256-46WjFA+E9M7RfTOM/Xoho+9ooToSgQiZaMlcZ3lJvBQ="; }.${system} or throwSystem; meta = with lib; { @@ -65,8 +65,8 @@ let src = fetchurl { url = "https://wire-app.wire.com/linux/debian/pool/main/" - + "Wire-${version}_amd64.deb"; - inherit sha256; + + "Wire-${version}_amd64.deb"; + inherit hash; }; desktopItem = makeDesktopItem { @@ -133,8 +133,8 @@ let src = fetchurl { url = "https://github.com/wireapp/wire-desktop/releases/download/" - + "macos%2F${version}/Wire.pkg"; - inherit sha256; + + "macos%2F${version}/Wire.pkg"; + inherit hash; }; buildInputs = [ diff --git a/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix b/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix index ba5f5d10226f4..78a647bf0152b 100644 --- a/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix +++ b/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix @@ -17,6 +17,7 @@ , substituteAll , _experimental-update-script-combinators , glib +, makeHardcodeGsettingsPatch }: stdenv.mkDerivation rec { @@ -64,9 +65,9 @@ stdenv.mkDerivation rec { ]; passthru = { - hardcodeGsettingsPatch = glib.mkHardcodeGsettingsPatch { + hardcodeGsettingsPatch = makeHardcodeGsettingsPatch { inherit src; - glib-schema-to-var = { + schemaIdToVariableMapping = { "org.gnome.evolution.mail" = "evo"; "org.gnome.evolution.calendar" = "evo"; }; diff --git a/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix b/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix index 6375e8212473b..283091ccc57d2 100644 --- a/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix +++ b/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix @@ -3,12 +3,12 @@ electron, libsecret }: stdenv.mkDerivation rec { pname = "tutanota-desktop"; - version = "3.98.20"; + version = "3.105.9"; src = fetchurl { url = "https://github.com/tutao/tutanota/releases/download/tutanota-desktop-release-${version}/${pname}-${version}-unpacked-linux.tar.gz"; name = "tutanota-desktop-${version}.tar.gz"; - sha256 = "sha256-ddRuIFmsZcyrZ/0T0Sk6pnmxuG5osZVYFw7NCmgvECc="; + sha256 = "sha256-PkAxtpyL4rXJfz+YgbVteOP1V0hlF25htvOCkEGFq4k="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/mkchromecast/default.nix b/pkgs/applications/networking/mkchromecast/default.nix index b0ed32511910d..58f381f7a4ea5 100644 --- a/pkgs/applications/networking/mkchromecast/default.nix +++ b/pkgs/applications/networking/mkchromecast/default.nix @@ -12,6 +12,7 @@ , youtube-dl , opusTools , gst_all_1 +, enableSonos ? true }: let packages = [ vorbis-tools @@ -37,7 +38,7 @@ python3Packages.buildPythonApplication rec { sha256 = "sha256-dxsIcBPrZaXlsfzOEXhYj2qoK5LRducJG2ggMrMMl9Y="; }; - propagatedBuildInputs = with python3Packages; [ + propagatedBuildInputs = with python3Packages; ([ PyChromecast psutil mutagen @@ -45,7 +46,7 @@ python3Packages.buildPythonApplication rec { netifaces requests pyqt5 - ]; + ] ++ lib.optionals enableSonos [ soco ]); postPatch = '' substituteInPlace setup.py \ diff --git a/pkgs/applications/networking/msmtp/default.nix b/pkgs/applications/networking/msmtp/default.nix index 8006d81c92983..df5c1354562c2 100644 --- a/pkgs/applications/networking/msmtp/default.nix +++ b/pkgs/applications/networking/msmtp/default.nix @@ -16,9 +16,9 @@ , which , Security , withKeyring ? true -, libsecret ? null +, libsecret , withSystemd ? stdenv.isLinux -, systemd ? null +, systemd }: let @@ -41,7 +41,7 @@ let platforms = platforms.unix; }; - binaries = stdenv.mkDerivation rec { + binaries = stdenv.mkDerivation { pname = "msmtp-binaries"; inherit version src meta; @@ -62,7 +62,7 @@ let ''; }; - scripts = resholve.mkDerivation rec { + scripts = resholve.mkDerivation { pname = "msmtp-scripts"; inherit version src meta; diff --git a/pkgs/applications/networking/newsreaders/liferea/default.nix b/pkgs/applications/networking/newsreaders/liferea/default.nix index b96d906fc96bd..362cdbbb0c30f 100644 --- a/pkgs/applications/networking/newsreaders/liferea/default.nix +++ b/pkgs/applications/networking/newsreaders/liferea/default.nix @@ -24,11 +24,11 @@ stdenv.mkDerivation rec { pname = "liferea"; - version = "1.14-RC2"; + version = "1.14-RC3"; src = fetchurl { url = "https://github.com/lwindolf/${pname}/releases/download/v${version}/${pname}-${version}.tar.bz2"; - sha256 = "UTK82s+7bzL+SyT40qDsqX8KTkITTpWtR/0VY/+OpcA="; + sha256 = "28xEGjzOKdrTlGF4OBEoDue9VVLrbiVgnoTKICfDp4M="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/sync/rclone/default.nix b/pkgs/applications/networking/sync/rclone/default.nix index 7568f45d6811a..6cdeaaf09e035 100644 --- a/pkgs/applications/networking/sync/rclone/default.nix +++ b/pkgs/applications/networking/sync/rclone/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "rclone"; - version = "1.60.1"; + version = "1.61.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-ss4GTXnvWMwin1jn5yzmclS7SGh7NmPvdcDFa1ygwzg="; + sha256 = "sha256-mBnpmCzuMCXZPM3Tq2SsOPwEfTUn1StahkB5U/6Fe+A="; }; - vendorSha256 = "sha256-si5fzyPQUUTKkm/UVt8xfpJGK/4F6GM4HuAg1R0hzqQ="; + vendorSha256 = "sha256-EGNRKSlpdH/NNfLzSDL3lQzArVsVM6oRkyZm31V8cgM="; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/synology-drive-client/default.nix b/pkgs/applications/networking/synology-drive-client/default.nix index f86be07dfeccf..dea70ffacdce1 100644 --- a/pkgs/applications/networking/synology-drive-client/default.nix +++ b/pkgs/applications/networking/synology-drive-client/default.nix @@ -2,7 +2,7 @@ let pname = "synology-drive-client"; baseUrl = "https://global.download.synology.com/download/Utility/SynologyDriveClient"; - version = "3.1.0-12923"; + version = "3.2.0-13258"; buildNumber = with lib; last (splitString "-" version); meta = with lib; { description = "Desktop application to synchronize files and folders between the computer and the Synology Drive server."; @@ -29,7 +29,7 @@ let src = fetchurl { url = "${baseUrl}/${version}/Ubuntu/Installer/x86_64/synology-drive-client-${buildNumber}.x86_64.deb"; - sha256 = "sha256-gL08uJbA2S+SuP1afMBmcJMIcu7QRzdiXgIMxSZQl/I="; + sha256 = "sha256-jnMwhirZphguW+hluhzD9aXDTQ9RuJgAtjh+Iy23c3w="; }; nativeBuildInputs = [ autoPatchelfHook dpkg ]; @@ -59,7 +59,7 @@ let src = fetchurl { url = "${baseUrl}/${version}/Mac/Installer/synology-drive-client-${buildNumber}.dmg"; - sha256 = "0pwm2xi1b9p9zmhy4dhix3aas49i183wxslyidfwvlaphic9qkxm"; + sha256 = "0hv0vgbvgqhzayc4przqhnkyvsykhw40hrwk6imvla00nix853wy"; }; nativeBuildInputs = [ cpio xar undmg ]; diff --git a/pkgs/applications/networking/warp/default.nix b/pkgs/applications/networking/warp/default.nix index 5a1a59d7c6e1f..0c47fc323a645 100644 --- a/pkgs/applications/networking/warp/default.nix +++ b/pkgs/applications/networking/warp/default.nix @@ -17,14 +17,14 @@ stdenv.mkDerivation rec { pname = "warp"; - version = "0.3.1"; + version = "0.3.2"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; repo = pname; rev = "v${version}"; - hash = "sha256-0zjtaF0RwI7Sj2D5vRaiBJI+Bp/F17VO9ywMRqZyqxI="; + hash = "sha256-oKkZC9fi5xPnLTI00MnG2gMjzMZHMNFI77ztbR4KQo4="; }; postPatch = '' @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-HotArxXfmT6Gw6ZZZQ4X6bTx0EFb6vZLbXxhddmGID8="; + hash = "sha256-sbyAyjxpol2SBxoLUsiPGfkP2diBPgJW0vEDHYWgmLU="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/office/PageEdit/default.nix b/pkgs/applications/office/PageEdit/default.nix index 02a69a0fe15c0..4d52782c857a7 100644 --- a/pkgs/applications/office/PageEdit/default.nix +++ b/pkgs/applications/office/PageEdit/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "PageEdit"; - version = "1.9.10"; + version = "1.9.20"; src = fetchFromGitHub { owner = "Sigil-Ebook"; repo = pname; rev = version; - hash = "sha256-y2Z5enEptiOrwEGBKlo4H4I9ojIPG9KP3BlvTCj4PVY="; + hash = "sha256-naoflFANeMwabbdrNL3+ndvEXYT4Yqf+Mo77HcCexHE="; }; nativeBuildInputs = [ cmake qttranslations ]; diff --git a/pkgs/applications/office/appflowy/default.nix b/pkgs/applications/office/appflowy/default.nix index 764a05a238359..d0b71ee92cf89 100644 --- a/pkgs/applications/office/appflowy/default.nix +++ b/pkgs/applications/office/appflowy/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { pname = "appflowy"; - version = "0.0.8.1"; + version = "0.0.9"; src = fetchzip { url = "https://github.com/AppFlowy-IO/appflowy/releases/download/${version}/AppFlowy-linux-x86.tar.gz"; - sha256 = "sha256-QMlJSNjN6pe9NNWoCFwo++Ic4/pbDPEjHFabcV2lZo8="; + sha256 = "sha256-E75ZqenCs5zWBERYoIrWc2v5CyjGKLrfsae1RCi/qNQ="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/office/hledger-check-fancyassertions/default.nix b/pkgs/applications/office/hledger-check-fancyassertions/default.nix index 6edef5b621bd8..9ffac0f312913 100644 --- a/pkgs/applications/office/hledger-check-fancyassertions/default.nix +++ b/pkgs/applications/office/hledger-check-fancyassertions/default.nix @@ -7,7 +7,7 @@ stdenvNoCC.mkDerivation rec { src = fetchurl { name = "hledger-check-fancyassertion-${version}.hs"; url = "https://raw.githubusercontent.com/simonmichael/hledger/hledger-lib-${version}/bin/hledger-check-fancyassertions.hs"; - sha256 = "1xy3ssxnwybq40nlffz95w7m9xbzf8ysb13svg0i8g5sfgrw11vk"; + sha256 = "0lyyz8dqkknd9d073l613kdkaqd9r6ymdw94d7mwp17pxvfr17wf"; }; dontUnpack = true; diff --git a/pkgs/applications/office/paperless-ngx/default.nix b/pkgs/applications/office/paperless-ngx/default.nix index 403e3d0d88a69..c31436edef8cf 100644 --- a/pkgs/applications/office/paperless-ngx/default.nix +++ b/pkgs/applications/office/paperless-ngx/default.nix @@ -20,20 +20,6 @@ let packageOverrides = self: super: { django = super.django_4; - # use paperless-ngx version of django-q - # see https://github.com/paperless-ngx/paperless-ngx/pull/1014 - django-q = super.django-q.overridePythonAttrs (oldAttrs: { - src = fetchFromGitHub { - owner = "paperless-ngx"; - repo = "django-q"; - hash = "sha256-alu7tZwUn77xhUF9c/aGmwRwO//mR/FucXjvXUl/6ek="; - rev = "8b5289d8caf36f67fb99448e76ead20d5b498c1b"; - }; - # due to paperless-ngx modification of the pyproject.toml file - # the patch is not needed any more - patches = [ ]; - }); - aioredis = super.aioredis.overridePythonAttrs (oldAttrs: rec { version = "1.3.1"; src = oldAttrs.src.override { @@ -93,12 +79,12 @@ let in python.pkgs.pythonPackages.buildPythonApplication rec { pname = "paperless-ngx"; - version = "1.9.2"; + version = "1.10.2"; - # Fetch the release tarball instead of a git ref because it contains the prebuilt fontend + # Fetch the release tarball instead of a git ref because it contains the prebuilt frontend src = fetchurl { url = "https://github.com/paperless-ngx/paperless-ngx/releases/download/v${version}/${pname}-v${version}.tar.xz"; - hash = "sha256-fafjVXRfzFrINzI/Ivfm1VY4YpemHkHwThBP54XoXM4="; + hash = "sha256-uOrRHHNqIYsDbzKcA7EsYZjadpLyAB4Ks+PU+BNsTWE="; }; format = "other"; @@ -112,6 +98,7 @@ python.pkgs.pythonPackages.buildPythonApplication rec { autobahn automat blessed + celery certifi cffi channels-redis @@ -124,11 +111,11 @@ python.pkgs.pythonPackages.buildPythonApplication rec { cryptography daphne dateparser + django-celery-results django-cors-headers django-extensions django-filter django-picklefield - django-q django djangorestframework filelock @@ -171,6 +158,7 @@ python.pkgs.pythonPackages.buildPythonApplication rec { pytz pyyaml pyzbar + rapidfuzz redis regex reportlab @@ -199,13 +187,6 @@ python.pkgs.pythonPackages.buildPythonApplication rec { zope_interface ]; - # paperless-ngx includes the bundled django-q version. This will - # conflict with the tests and is not needed since we overrode the - # django-q version with the paperless-ngx version - postPatch = '' - rm -rf src/django-q - ''; - # Compile manually because `pythonRecompileBytecodeHook` only works for # files in `python.sitePackages` postBuild = '' @@ -246,8 +227,19 @@ python.pkgs.pythonPackages.buildPythonApplication rec { # Disable unneeded code coverage test substituteInPlace src/setup.cfg \ --replace "--cov --cov-report=html" "" + # OCR on NixOS recognizes the space in the picture, upstream CI doesn't. + # See https://github.com/paperless-ngx/paperless-ngx/pull/2216 + substituteInPlace src/paperless_tesseract/tests/test_parser.py \ + --replace "this is awebp document" "this is a webp document" ''; + disabledTests = [ + # FileNotFoundError(2, 'No such file or directory'): /build/tmp... + "test_script_with_output" + # AssertionError: 10 != 4 (timezone/time issue) + # Due to getting local time from modification date in test_consumer.py + "testNormalOperation" + ]; passthru = { inherit python path; diff --git a/pkgs/applications/office/portfolio/default.nix b/pkgs/applications/office/portfolio/default.nix index 6e5941bd3eef4..64dc3f400ec16 100644 --- a/pkgs/applications/office/portfolio/default.nix +++ b/pkgs/applications/office/portfolio/default.nix @@ -27,11 +27,11 @@ let in stdenv.mkDerivation rec { pname = "PortfolioPerformance"; - version = "0.59.5"; + version = "0.60.0"; src = fetchurl { url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz"; - sha256 = "sha256-6AEc9wc3/8AubPvqq8s9R1RnO+P8+92UsNEt6AdQv+w="; + sha256 = "sha256-L4ZLlxHsnJrvrrrX56Z+agjnaMl472Izm4Un1uaNqZA="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/office/treesheets/default.nix b/pkgs/applications/office/treesheets/default.nix index 33ac5b8b5e399..30e6835ed3693 100644 --- a/pkgs/applications/office/treesheets/default.nix +++ b/pkgs/applications/office/treesheets/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "treesheets"; - version = "unstable-2022-11-11"; + version = "unstable-2022-12-13"; src = fetchFromGitHub { owner = "aardappel"; repo = "treesheets"; - rev = "94881402b4730f598a536d8cddb3314eaf16defc"; - sha256 = "+fv05KqfhpFeufUduOikXJuQmZfOq+i97B8kP//hsk0="; + rev = "321a1df0b3364ffa9a29c6ad6e6e93d203e4cf48"; + sha256 = "DGYwJKfWhnCQ5rUgY232k+SuFmj2xEHAPCqPrV2uTXI="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/plasma-mobile/alligator.nix b/pkgs/applications/plasma-mobile/alligator.nix index b88c8e3c60ece..4470141af2962 100644 --- a/pkgs/applications/plasma-mobile/alligator.nix +++ b/pkgs/applications/plasma-mobile/alligator.nix @@ -7,6 +7,7 @@ , kconfig , kcoreaddons , ki18n +, kirigami-addons , kirigami2 , qtquickcontrols2 , syndication @@ -24,6 +25,7 @@ mkDerivation rec { kconfig kcoreaddons ki18n + kirigami-addons kirigami2 qtquickcontrols2 syndication diff --git a/pkgs/applications/plasma-mobile/angelfish.nix b/pkgs/applications/plasma-mobile/angelfish.nix index 5ed6cec01aa92..8158e4d6ea6e8 100644 --- a/pkgs/applications/plasma-mobile/angelfish.nix +++ b/pkgs/applications/plasma-mobile/angelfish.nix @@ -19,8 +19,8 @@ , srcs # These must be updated in tandem with package updates. -, cargoShaForVersion ? "22.09" -, cargoSha256 ? "sha256-uxLvAhRV185srZZ0ZMsLRevAyMmajXERPRYotMcnLJA=" +, cargoShaForVersion ? "22.11" +, cargoSha256 ? "sha256-l1+nRXGt6Oga9yFJ3sVNitUN4XNcVjT1bJwi2XlleF4=" }: # Guard against incomplete updates. diff --git a/pkgs/applications/plasma-mobile/audiotube.nix b/pkgs/applications/plasma-mobile/audiotube.nix index ee98e524afcee..cb87fe0ed24db 100644 --- a/pkgs/applications/plasma-mobile/audiotube.nix +++ b/pkgs/applications/plasma-mobile/audiotube.nix @@ -3,11 +3,14 @@ , extra-cmake-modules , gcc11 +, wrapGAppsHook +, gst_all_1 , kcoreaddons , kcrash , ki18n , kirigami2 +, qtimageformats , qtmultimedia , qtquickcontrols2 , python3Packages @@ -16,10 +19,9 @@ mkDerivation rec { pname = "audiotube"; - postPatch = "sed '1i#include <iostream>' -i src/ytmusic.cpp"; - nativeBuildInputs = [ extra-cmake-modules + wrapGAppsHook gcc11 # doesn't build with GCC 9 from stdenv on aarch64 python3Packages.wrapPython python3Packages.pybind11 @@ -30,9 +32,15 @@ mkDerivation rec { kcrash ki18n kirigami2 + qtimageformats qtmultimedia qtquickcontrols2 - ] ++ pythonPath; + ] ++ (with gst_all_1; [ + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gstreamer + ]) ++ pythonPath; pythonPath = with python3Packages; [ yt-dlp @@ -42,7 +50,9 @@ mkDerivation rec { preFixup = '' buildPythonPath "$pythonPath" qtWrapperArgs+=(--prefix PYTHONPATH : "$program_PYTHONPATH") + qtWrapperArgs+=("''${gappsWrapperArgs[@]}") ''; + dontWrapGApps = true; meta = with lib; { description = "Client for YouTube Music"; diff --git a/pkgs/applications/plasma-mobile/default.nix b/pkgs/applications/plasma-mobile/default.nix index 5c3caf42eb762..48a3f1281fcbf 100644 --- a/pkgs/applications/plasma-mobile/default.nix +++ b/pkgs/applications/plasma-mobile/default.nix @@ -77,7 +77,7 @@ let plasma-dialer = callPackage ./plasma-dialer.nix {}; plasma-phonebook = callPackage ./plasma-phonebook.nix {}; plasma-settings = callPackage ./plasma-settings.nix {}; - plasmatube = callPackage ./plasmatube.nix {}; + plasmatube = callPackage ./plasmatube {}; spacebar = callPackage ./spacebar.nix { inherit srcs; }; }; diff --git a/pkgs/applications/plasma-mobile/fetch.sh b/pkgs/applications/plasma-mobile/fetch.sh index eca9970052886..96bb4eb0907c2 100644 --- a/pkgs/applications/plasma-mobile/fetch.sh +++ b/pkgs/applications/plasma-mobile/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma-mobile/22.09/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma-mobile/22.11/ -A '*.tar.xz' ) diff --git a/pkgs/applications/plasma-mobile/kclock.nix b/pkgs/applications/plasma-mobile/kclock.nix index 058f536d79042..6212fa8b0400b 100644 --- a/pkgs/applications/plasma-mobile/kclock.nix +++ b/pkgs/applications/plasma-mobile/kclock.nix @@ -8,6 +8,7 @@ , kcoreaddons , kdbusaddons , ki18n +, kirigami-addons , kirigami2 , knotifications , plasma-framework @@ -28,6 +29,7 @@ mkDerivation rec { kcoreaddons kdbusaddons ki18n + kirigami-addons kirigami2 knotifications plasma-framework diff --git a/pkgs/applications/plasma-mobile/krecorder.nix b/pkgs/applications/plasma-mobile/krecorder.nix index 191a0bddb6802..71164d1b02d43 100644 --- a/pkgs/applications/plasma-mobile/krecorder.nix +++ b/pkgs/applications/plasma-mobile/krecorder.nix @@ -9,6 +9,7 @@ , ki18n , kirigami2 , kirigami-addons +, kwindowsystem , qtmultimedia , qtquickcontrols2 }: @@ -27,6 +28,7 @@ mkDerivation rec { ki18n kirigami2 kirigami-addons + kwindowsystem qtmultimedia qtquickcontrols2 ]; diff --git a/pkgs/applications/plasma-mobile/neochat.nix b/pkgs/applications/plasma-mobile/neochat.nix index 2ff22144780ee..2f655d5a9e09c 100644 --- a/pkgs/applications/plasma-mobile/neochat.nix +++ b/pkgs/applications/plasma-mobile/neochat.nix @@ -12,6 +12,7 @@ , kdbusaddons , ki18n , kio +, kirigami-addons , kirigami2 , kitemmodels , knotifications @@ -47,6 +48,7 @@ gcc11Stdenv.mkDerivation rec { kdbusaddons kio ki18n + kirigami-addons kirigami2 kitemmodels knotifications diff --git a/pkgs/applications/plasma-mobile/plasma-dialer.nix b/pkgs/applications/plasma-mobile/plasma-dialer.nix index 6c453e3af7060..1c2223e3c89fa 100644 --- a/pkgs/applications/plasma-mobile/plasma-dialer.nix +++ b/pkgs/applications/plasma-mobile/plasma-dialer.nix @@ -10,6 +10,7 @@ , kdbusaddons , ki18n , kio +, kirigami-addons , kirigami2 , knotifications , kpeople @@ -44,6 +45,7 @@ mkDerivation rec { kdbusaddons ki18n kio + kirigami-addons kirigami2 knotifications kpeople diff --git a/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch b/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch new file mode 100644 index 0000000000000..704b92b2b01a7 --- /dev/null +++ b/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch @@ -0,0 +1,25 @@ +From 7a9405ed02b0d86839644a2c237ca7ca8b891b76 Mon Sep 17 00:00:00 2001 +From: Samuel Dionne-Riel <samuel@dionne-riel.com> +Date: Wed, 30 Nov 2022 21:07:56 -0500 +Subject: [PATCH] Add placeholders for runtime dependencies + +--- + src/videomodel.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/videomodel.cpp b/src/videomodel.cpp +index 4bb3451..b558f31 100644 +--- a/src/videomodel.cpp ++++ b/src/videomodel.cpp +@@ -121,7 +121,7 @@ QString VideoModel::remoteUrl() + return {}; + } + +- QString youtubeDl = QStringLiteral("yt-dlp"); ++ QString youtubeDl = QStringLiteral("@yt-dlp@"); + QStringList arguments; + arguments << QLatin1String("--dump-json") + << m_videoId; +-- +2.38.0 + diff --git a/pkgs/applications/plasma-mobile/plasmatube.nix b/pkgs/applications/plasma-mobile/plasmatube/default.nix index 894af98b6d187..81041b22931dc 100644 --- a/pkgs/applications/plasma-mobile/plasmatube.nix +++ b/pkgs/applications/plasma-mobile/plasmatube/default.nix @@ -2,6 +2,7 @@ , mkDerivation , cmake , extra-cmake-modules +, wrapGAppsHook , gst_all_1 , kcoreaddons , kdeclarative @@ -9,6 +10,7 @@ , kirigami2 , qtmultimedia , qtquickcontrols2 +, yt-dlp }: mkDerivation { @@ -16,6 +18,7 @@ mkDerivation { nativeBuildInputs = [ extra-cmake-modules + wrapGAppsHook ]; buildInputs = [ @@ -32,6 +35,20 @@ mkDerivation { gstreamer ]); + patches = [ + ./0001-Add-placeholders-for-runtime-dependencies.patch + ]; + + postPatch = '' + substituteInPlace src/videomodel.cpp \ + --replace "@yt-dlp@" "${yt-dlp}/bin/yt-dlp" + ''; + + preFixup = '' + qtWrapperArgs+=("''${gappsWrapperArgs[@]}") + ''; + dontWrapGApps = true; + meta = { description = "Youtube player powered by an invidious server"; homepage = "https://invent.kde.org/plasma-mobile/plasmatube"; diff --git a/pkgs/applications/plasma-mobile/srcs.nix b/pkgs/applications/plasma-mobile/srcs.nix index 5bc824c441960..a30966847a59d 100644 --- a/pkgs/applications/plasma-mobile/srcs.nix +++ b/pkgs/applications/plasma-mobile/srcs.nix @@ -4,195 +4,195 @@ { alligator = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/alligator-22.09.tar.xz"; - sha256 = "0krys21df6mlyi2zxdxgqx02k1q7njliz0nsxcygxrd89ajxlslb"; - name = "alligator-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/alligator-22.11.tar.xz"; + sha256 = "02hg42mmvykq71my6wbgc3yri4c3mr4bp73b7p21j1b8m3x0ycsl"; + name = "alligator-22.11.tar.xz"; }; }; angelfish = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/angelfish-22.09.tar.xz"; - sha256 = "1blhn84xka11zjwqimr30qv94jp5slfcmc44xcjxginl3n6hicwx"; - name = "angelfish-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/angelfish-22.11.tar.xz"; + sha256 = "07gp6468c7rhf3hzzk6qyz4kcah0s1wnn5r3mx7qmg777xaans9y"; + name = "angelfish-22.11.tar.xz"; }; }; audiotube = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/audiotube-22.09.tar.xz"; - sha256 = "1ay3qrg8lnw209kwmgm2ll5k1gbp2q694g6w837xl2wjy792vqw8"; - name = "audiotube-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/audiotube-22.11.tar.xz"; + sha256 = "0ga7ag8v9l91j5rrn02kk73zl29lwigcql1xfh7yw5cnky3xd13q"; + name = "audiotube-22.11.tar.xz"; }; }; calindori = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/calindori-22.09.tar.xz"; - sha256 = "1pwgdqznp76mhk0ikzjhy3c67qgk91kgv69ygqwzlh5hwiw5sl4n"; - name = "calindori-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/calindori-22.11.tar.xz"; + sha256 = "1mgdd61zmnjbpcwkaq2aiawksf1s86b05sq502by6gpdrwndhb5c"; + name = "calindori-22.11.tar.xz"; }; }; kalk = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kalk-22.09.tar.xz"; - sha256 = "0sci3jv3asjxahcdz2vkmh90fbffx8lfj1cy5kqnpijdxcm10gfq"; - name = "kalk-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kalk-22.11.tar.xz"; + sha256 = "0ri39455341nw6bn0lphky6n2b4ib9g4i24f6gzc0adnbhbpxdiq"; + name = "kalk-22.11.tar.xz"; }; }; kasts = { - version = "22.09.2"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kasts-22.09.2.tar.xz"; - sha256 = "10i0b8k1k0ki8pq8hsj979y7np75iaq49bxkyj95zzci9g73vd59"; - name = "kasts-22.09.2.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kasts-22.11.tar.xz"; + sha256 = "049700i15cw07c6053iml1q3h5mni24kdf8nvkdafdafhslb84i9"; + name = "kasts-22.11.tar.xz"; }; }; kclock = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kclock-22.09.tar.xz"; - sha256 = "18b5lncgh9vc94bgrdmzigi853j4l7hqrvggk4hfcklj4pnv1bav"; - name = "kclock-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kclock-22.11.tar.xz"; + sha256 = "02v64zfbv1g3q4w79d0r8rxqiqsnxms7dgkjv09bp1gl1asqx354"; + name = "kclock-22.11.tar.xz"; }; }; keysmith = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/keysmith-22.09.tar.xz"; - sha256 = "0w3vvmp9rn6ahly2fm9n6f4glfr7d84bfvj33mrs5pn7n99h7jgy"; - name = "keysmith-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/keysmith-22.11.tar.xz"; + sha256 = "1aimsgwk80yvncbsjnaxvr6aj8y4g40dpwfv0qi0k7b3xkrmqdk5"; + name = "keysmith-22.11.tar.xz"; }; }; khealthcertificate = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/khealthcertificate-22.09.tar.xz"; - sha256 = "16vkjpyxwx34pvdpnci0l6mx2bdjialiscjvbdx53xbsq9ff701k"; - name = "khealthcertificate-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/khealthcertificate-22.11.tar.xz"; + sha256 = "0gw6j70k0nvbfb1vfj8b64vfipdckzd8hqqmp9vrmsg7y8g8n0hi"; + name = "khealthcertificate-22.11.tar.xz"; }; }; koko = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/koko-22.09.tar.xz"; - sha256 = "1z3ysc2f1agbkmm2cxa87x5rk2nx9fjv3czlvcsn8s5ssfdws3gl"; - name = "koko-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/koko-22.11.tar.xz"; + sha256 = "1jqjjd9spyppdbijdnvci742wj80p10pfbjp1hyc0y4zdjic67bv"; + name = "koko-22.11.tar.xz"; }; }; kongress = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kongress-22.09.tar.xz"; - sha256 = "0pjp2s774sgw2dklqib8alm1a9fkixy3s92i2v8v00znx08zf2jz"; - name = "kongress-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kongress-22.11.tar.xz"; + sha256 = "03r8xck9vxl3al3f5v6g0yzqzs3yxl3lg7zg73ik22q6z2rb1adb"; + name = "kongress-22.11.tar.xz"; }; }; krecorder = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/krecorder-22.09.tar.xz"; - sha256 = "0kcgw7bsyw3bhai2djcq3qjn5ims7i4qbvpm7nwpjkm1p3m7fjii"; - name = "krecorder-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/krecorder-22.11.tar.xz"; + sha256 = "1wiihcp1c0wc7ssj9hj18rnzf8synaxmq6b0m2m286x4zibl50wb"; + name = "krecorder-22.11.tar.xz"; }; }; ktrip = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/ktrip-22.09.tar.xz"; - sha256 = "0x9s4yh2nvy7zmg3ds9bn8ir6wx10i8d0mvfaylbzb39rcabpmrl"; - name = "ktrip-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/ktrip-22.11.tar.xz"; + sha256 = "07mjf9jpj20ixhswy4byqy3m4sr1qylwlvq2prabn11j42ahpsy7"; + name = "ktrip-22.11.tar.xz"; }; }; kweather = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kweather-22.09.tar.xz"; - sha256 = "0z3z659y1r1jry02w0hxwcpghkgxgqiwj1kqck07vlg8ks7lz1jz"; - name = "kweather-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kweather-22.11.tar.xz"; + sha256 = "0sqc74yp5hvrjagax6nj0gm4qvbxqr66706yh12abcn9gpl33ndl"; + name = "kweather-22.11.tar.xz"; }; }; neochat = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/neochat-22.09.tar.xz"; - sha256 = "1j8p6mv89q1krjjbc9n26r83csqpxwd03zzhvzxxm53334qwqdci"; - name = "neochat-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/neochat-22.11.tar.xz"; + sha256 = "1gnhk9hww05bc4y8jd4sg3146c6m96ds2saajrnzyc6963j2ndi5"; + name = "neochat-22.11.tar.xz"; }; }; plasma-dialer = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasma-dialer-22.09.tar.xz"; - sha256 = "1wk8q5lc15d53viqyknsww1hgci1rxmnra4hj887fabnj0id29rs"; - name = "plasma-dialer-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasma-dialer-22.11.tar.xz"; + sha256 = "1qx7xmvfszpsrb2jylnwfs8rhr09kxvy5vnyzzcds248ljh5l6dy"; + name = "plasma-dialer-22.11.tar.xz"; }; }; plasma-phonebook = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasma-phonebook-22.09.tar.xz"; - sha256 = "1wsv330sfjh78fg98kd2g6a4bsmdyf7gn9r3aqazci7p7i5n2ln0"; - name = "plasma-phonebook-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasma-phonebook-22.11.tar.xz"; + sha256 = "02sj6v18w63ixy0c93fm4j9n4q98497qrb509q84618gry4cazly"; + name = "plasma-phonebook-22.11.tar.xz"; }; }; plasma-settings = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasma-settings-22.09.tar.xz"; - sha256 = "0jq2r7ckz27a8r41n4jn61wlrpcx0qwlasipig4jz7rc9i0ayfka"; - name = "plasma-settings-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasma-settings-22.11.tar.xz"; + sha256 = "0pg71plcbn4zkwxwcvay9swaa5xn3mnljdpnh4i8f86x2pa1pq5j"; + name = "plasma-settings-22.11.tar.xz"; }; }; plasmatube = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasmatube-22.09.tar.xz"; - sha256 = "00w9p5fcpv4s406lmcdcbrxf19sgkvf9yy8pfjmf1asvvvi8bpnk"; - name = "plasmatube-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasmatube-22.11.tar.xz"; + sha256 = "0vgxvyw4yl91kaj9cnjf455mpj4a5rh5f1z0in8k9p2jbs8wmjil"; + name = "plasmatube-22.11.tar.xz"; }; }; qmlkonsole = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/qmlkonsole-22.09.tar.xz"; - sha256 = "19bf9f4vxa8arnl1zjappg6kh21br131cbsx902qnpv6y0r3swz1"; - name = "qmlkonsole-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/qmlkonsole-22.11.tar.xz"; + sha256 = "03hwyrl6rb7yidw0nadis6csb6snpfv137j46rbpl35vrqrnrh5i"; + name = "qmlkonsole-22.11.tar.xz"; }; }; spacebar = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/spacebar-22.09.tar.xz"; - sha256 = "0fmk7fa7i67l8ff0amn80yxhf05vf0j9c42zj6qg5p30d1j31pbl"; - name = "spacebar-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/spacebar-22.11.tar.xz"; + sha256 = "1q0nyfvssiz5i19wyk4pvazax3vvk945cmknw4l51mpcc3hnc1v5"; + name = "spacebar-22.11.tar.xz"; }; }; telly-skout = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/telly-skout-22.09.tar.xz"; - sha256 = "1byakylbjjxyz6bh59dydqnvh8c627jpx39ih1ylrdl8jlkd0scy"; - name = "telly-skout-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/telly-skout-22.11.tar.xz"; + sha256 = "0sfdia4jwcv24z5d3qykqv7ncr2c5v7ywq471nggwpcr22bwzn6x"; + name = "telly-skout-22.11.tar.xz"; }; }; tokodon = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/tokodon-22.09.tar.xz"; - sha256 = "123vyq9vfl48l7ssrymvkhxlkwihplnssal0wvz4n2dk59byl46p"; - name = "tokodon-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/tokodon-22.11.tar.xz"; + sha256 = "0afrqih1bkgg0xqr81sq9q3glyhy8347p8vzddl42zsxax9wki59"; + name = "tokodon-22.11.tar.xz"; }; }; vakzination = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/vakzination-22.09.tar.xz"; - sha256 = "01xzc1di57j0fgzkqwa39jng0fd90laya0rj85vjda7mbh2lxxk6"; - name = "vakzination-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/vakzination-22.11.tar.xz"; + sha256 = "0587p5q9v0lh3nz00dfa8kym36xcgcg8n4alnchk6kr8c479kmk6"; + name = "vakzination-22.11.tar.xz"; }; }; } diff --git a/pkgs/applications/radio/gnuradio/default.nix b/pkgs/applications/radio/gnuradio/default.nix index 9dc88d1bdbd80..6ca669a8fe948 100644 --- a/pkgs/applications/radio/gnuradio/default.nix +++ b/pkgs/applications/radio/gnuradio/default.nix @@ -48,13 +48,13 @@ , pname ? "gnuradio" , versionAttr ? { major = "3.10"; - minor = "4"; + minor = "5"; patch = "0"; } }: let - sourceSha256 = "sha256-Ov2NGiEj3mhqYwDYXWd6wcCAv78Ux2/LWyGjQ/ukQNk="; + sourceSha256 = "sha256-NP7OH4kRulWpWxyHudIzCJPfjiiilgnhBlixmwOj70I="; featuresInfo = { # Needed always basic = { diff --git a/pkgs/applications/radio/limesuite/default.nix b/pkgs/applications/radio/limesuite/default.nix index 3eafadce114ad..ed4c797fac474 100644 --- a/pkgs/applications/radio/limesuite/default.nix +++ b/pkgs/applications/radio/limesuite/default.nix @@ -2,7 +2,8 @@ , sqlite, wxGTK32, libusb1, soapysdr , mesa_glu, libX11, gnuplot, fltk , GLUT -} : +, withGui ? true +}: stdenv.mkDerivation rec { pname = "limesuite"; @@ -19,20 +20,21 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DOpenGL_GL_PREFERENCE=GLVND" - ]; + ] ++ lib.optional (!withGui) "-DENABLE_GUI=OFF"; buildInputs = [ libusb1 sqlite - wxGTK32 - fltk gnuplot libusb1 soapysdr - mesa_glu - libX11 ] ++ lib.optionals stdenv.isDarwin [ GLUT + ] ++ lib.optionals withGui [ + fltk + libX11 + mesa_glu + wxGTK32 ]; postInstall = '' diff --git a/pkgs/applications/radio/srsran/default.nix b/pkgs/applications/radio/srsran/default.nix index 257de8b4c2043..5bd408e25566a 100644 --- a/pkgs/applications/radio/srsran/default.nix +++ b/pkgs/applications/radio/srsran/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "srsran"; - version = "22.04.1"; + version = "22.10"; src = fetchFromGitHub { owner = "srsran"; repo = "srsran"; rev = "release_${builtins.replaceStrings ["."] ["_"] version}"; - sha256 = "sha256-jqaGlMhy6L6lRknl6Ezi0n+vNjMb7C+FN9a+QeOy/RY="; + sha256 = "sha256-O43MXJ6EyKXg7hA1WjW8TqLmAWC+h5RLBGzBO6f/0zo="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/applications/science/biology/sratoolkit/default.nix b/pkgs/applications/science/biology/sratoolkit/default.nix new file mode 100644 index 0000000000000..8a1bb5376eaf4 --- /dev/null +++ b/pkgs/applications/science/biology/sratoolkit/default.nix @@ -0,0 +1,56 @@ +{ stdenv +, lib +, fetchurl +, autoPatchelfHook +, libidn +, zlib +, bzip2 +}: + + +let + libidn11 = libidn.overrideAttrs (old: { + pname = "libidn"; + version = "1.34"; + src = fetchurl { + url = "mirror://gnu/libidn/libidn-1.34.tar.gz"; + sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p"; + }; + }); + +in + +stdenv.mkDerivation rec { + pname = "sratoolkit"; + version = "2.11.3"; + + src = fetchurl { + url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${version}/sratoolkit.${version}-ubuntu64.tar.gz"; + sha256 = "1590lc4cplxr3lhjqci8fjncy67imn2h14qd2l87chmhjh243qvx"; + }; + + nativeBuildInputs = [ + autoPatchelfHook + ]; + + buildInputs = [ + libidn11 + zlib + bzip2 + stdenv.cc.cc.lib + ]; + + sourceRoot = "./sratoolkit.${version}-ubuntu64/bin"; + + installPhase = '' + find -L . -executable -type f -! -name "*remote-fuser*" -exec install -m755 -D {} $out/bin/{} \; + ''; + + meta = with lib; { + homepage = "https://github.com/ncbi/sra-tools"; + description = "The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives."; + license = licenses.publicDomain; + maintainers = with maintainers; [ thyol ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/science/electronics/kicad/base.nix b/pkgs/applications/science/electronics/kicad/base.nix index 91834642681d8..d7250db07b491 100644 --- a/pkgs/applications/science/electronics/kicad/base.nix +++ b/pkgs/applications/science/electronics/kicad/base.nix @@ -33,6 +33,7 @@ , dbus , at-spi2-core , libXtst +, pcre2 , swig4 , python @@ -67,6 +68,11 @@ stdenv.mkDerivation rec { src = kicadSrc; + patches = [ + # upstream issue 12941 (attempted to upstream, but appreciably unacceptable) + ./writable.patch + ]; + # tagged releases don't have "unknown" # kicad nightlies use git describe --dirty # nix removes .git, so its approximated here @@ -114,6 +120,9 @@ stdenv.mkDerivation rec { ] ++ optionals (!withPCM && stable) [ "-DKICAD_PCM=OFF" + ] + ++ optionals (!stable) [ # upstream issue 12491 + "-DCMAKE_CTEST_ARGUMENTS='--exclude-regex;qa_eeschema'" ]; nativeBuildInputs = [ @@ -136,6 +145,7 @@ stdenv.mkDerivation rec { dbus at-spi2-core libXtst + pcre2 ]; buildInputs = [ @@ -162,14 +172,10 @@ stdenv.mkDerivation rec { ++ optional (withScripting) wxPython ++ optional (withNgspice) libngspice ++ optional (withOCC) opencascade-occt - ++ optional (debug) valgrind - ; - - # started becoming necessary halfway into 2022, not sure what changed to break a test... - preInstallCheck = optionals (withNgspice) [ "export LD_LIBRARY_PATH=${libngspice}/lib" ]; + ++ optional (debug) valgrind; # debug builds fail all but the python test - doInstallCheck = !debug; + doInstallCheck = !(debug); installCheckTarget = "test"; dontStrip = debug; diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index 1540e3bdb6960..6aeb63d671148 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -138,8 +138,7 @@ stdenv.mkDerivation rec { ++ optionals (withScripting) [ python.pkgs.wrapPython ]; - # We are emulating wrapGAppsHook, along with other variables to the - # wrapper + # We are emulating wrapGAppsHook, along with other variables to the wrapper makeWrapperArgs = with passthru.libraries; [ "--prefix XDG_DATA_DIRS : ${base}/share" "--prefix XDG_DATA_DIRS : ${hicolor-icon-theme}/share" @@ -231,5 +230,7 @@ stdenv.mkDerivation rec { # as long as the base and libraries (minus 3d) are build, # this wrapper does not need to get built # the kicad-*small "packages" cause this to happen + + mainProgram = "kicad"; }; } diff --git a/pkgs/applications/science/electronics/kicad/versions.nix b/pkgs/applications/science/electronics/kicad/versions.nix index 737a819e84777..811a405853634 100644 --- a/pkgs/applications/science/electronics/kicad/versions.nix +++ b/pkgs/applications/science/electronics/kicad/versions.nix @@ -3,45 +3,45 @@ { "kicad" = { kicadVersion = { - version = "6.0.9"; + version = "6.0.10"; src = { - rev = "8da3e8f7071484853b31c61cbd5045903b5c6dd3"; - sha256 = "1fr02jcy09v14d3k8ril0zhwnzhcqcf77wfj5b3bkrh6r8xraqhs"; + rev = "86aedd382b4ece39e27bef209e81792915103704"; + sha256 = "0pz8d96imc0q3nh7npr5zf0jkzi94wchvw57spcrgqfac9yrld3q"; }; }; libVersion = { - version = "6.0.9"; + version = "6.0.10"; libSources = { - symbols.rev = "0d9559dfddd51110e5c5223901ada2445285ce80"; - symbols.sha256 = "0y5mjjmmln37hkp9wmydinlfgrn8im8rn20145g9xgdpj8j38d48"; + symbols.rev = "3ec40517b37d78faf7ff5504c81362420c4b601f"; + symbols.sha256 = "1fwnr8x345jbifk71rhyd4b88c4ijp2rcw3pmivnwfb444hbr1lp"; templates.rev = "ae2b46f8756d79379b90fec01d4fdde1ccfd73c1"; templates.sha256 = "08zxh83fbygh1x2jhca8nrp3f9kihf7kmg65qmyp95wvps4p5h8v"; - footprints.rev = "6705da57c29e9896556c7cdbe719ede3f96e9121"; - footprints.sha256 = "02j445i0kcf87fhj9y6pwfcwq3arppxbrv77lbizm8kcpkpcfldl"; - packages3d.rev = "45df600c5e3dd5113d62e6445115e7c37bdf362f"; - packages3d.sha256 = "0cnrg7mr3khpglviid1adk2ihs1qwj0r7l32z2vqsl8aidzbg9kr"; + footprints.rev = "24671f7754c74dfa528e6b62ebef33b161aa4ab6"; + footprints.sha256 = "1rs05n1wjb2w3x7xqkkijbdxyw3fj0fph8znvnsxp9bgwaaipd4h"; + packages3d.rev = "417c4ea884a0d1501061f511730604890bbb0a35"; + packages3d.sha256 = "0nmvfchp25i4bkx6yf7fz1rwy7w6whj2w7mlp02ag3w5v4f137vz"; }; }; }; "kicad-unstable" = { kicadVersion = { - version = "2022-09-18"; + version = "2022-12-19"; src = { - rev = "0efc1149afed2af5b81e4555de4623217ece650f"; - sha256 = "19fqy8yvvl45izg5ynhch9r4gl4ncx0bz9s6n1x98bgzxkdyc14q"; + rev = "a3a2e2e5b1981ebfbb60f1e8e40bd02625d33692"; + sha256 = "1584n2gn68vdyzlm9805ln1bdgzf831j5l4v29z08dkbi2sl3rg0"; }; }; libVersion = { - version = "2022-09-18"; + version = "2022-12-19"; libSources = { - symbols.rev = "879023fba005d23f285b6d052d9e6bcba1d754aa"; - symbols.sha256 = "1nxz8r3h3j62fs3s77lj27333fsj5c4i01n05lv0gqx36h28hqxk"; + symbols.rev = "2fa69d6d1dce065f8d0998733f66d2cd7db31b9e"; + symbols.sha256 = "1kp8v0q1pirpi4v485j5bg72jpnxglbpgxjxda6kvq8d2124pwlb"; templates.rev = "ae2b46f8756d79379b90fec01d4fdde1ccfd73c1"; templates.sha256 = "08zxh83fbygh1x2jhca8nrp3f9kihf7kmg65qmyp95wvps4p5h8v"; - footprints.rev = "b1dfe894de90b0063befc02b914dc9e2b47e3a62"; - footprints.sha256 = "06kn6c00wlnr33mks582xhadvkbbgmqhb4qc1wjfw264pavz7v7y"; - packages3d.rev = "45df600c5e3dd5113d62e6445115e7c37bdf362f"; - packages3d.sha256 = "0cnrg7mr3khpglviid1adk2ihs1qwj0r7l32z2vqsl8aidzbg9kr"; + footprints.rev = "24671f7754c74dfa528e6b62ebef33b161aa4ab6"; + footprints.sha256 = "1rs05n1wjb2w3x7xqkkijbdxyw3fj0fph8znvnsxp9bgwaaipd4h"; + packages3d.rev = "7aeaa02a2e7438fbbe94a00ca321366a39dc1267"; + packages3d.sha256 = "13wfcm7fgsgl3a0g00ra3v35c8wqw9yzgdiai54f1m77r2cr7bhp"; }; }; }; diff --git a/pkgs/applications/science/electronics/kicad/writable.patch b/pkgs/applications/science/electronics/kicad/writable.patch new file mode 100644 index 0000000000000..a2969f26f43ba --- /dev/null +++ b/pkgs/applications/science/electronics/kicad/writable.patch @@ -0,0 +1,49 @@ +commit 6a72fd032405515e468797be91b5a6ebcbbb5fd8 +Author: Evils <evils.devils@protonmail.com> +Date: Wed Nov 23 19:49:13 2022 +0100 + + ensure new projects are writable + +diff --git a/kicad/kicad_manager_frame.cpp b/kicad/kicad_manager_frame.cpp +index 7ee8090858..391514519c 100644 +--- a/kicad/kicad_manager_frame.cpp ++++ b/kicad/kicad_manager_frame.cpp +@@ -638,6 +638,12 @@ void KICAD_MANAGER_FRAME::CreateNewProject( const wxFileName& aProjectFileName, + + // wxFFile dtor will close the file + } ++ ++ if( destFileName.IsOk() && !destFileName.IsFileWritable() ) ++ { ++ destFileName.SetPermissions(0644); ++ } ++ + } + } + +diff --git a/kicad/project_template.cpp b/kicad/project_template.cpp +index bf951fcddb..2bef94326b 100644 +--- a/kicad/project_template.cpp ++++ b/kicad/project_template.cpp +@@ -282,6 +282,21 @@ bool PROJECT_TEMPLATE::CreateProject( wxFileName& aNewProjectPath, wxString* aEr + + result = false; + } ++ else if( !destFile.IsFileWritable() && !destFile.SetPermissions(0644) ) ++ { ++ if( aErrorMsg ) ++ { ++ if( !aErrorMsg->empty() ) ++ *aErrorMsg += "\n"; ++ ++ wxString msg; ++ ++ msg.Printf( _( "Cannot make file writable: '%s'." ), destFile.GetFullPath() ); ++ *aErrorMsg += msg; ++ } ++ ++ result = false; ++ } + } + + return result; diff --git a/pkgs/applications/science/logic/formula/nuget.nix b/pkgs/applications/science/logic/formula/nuget.nix index 40b9abe7fad92..e3b0fe67446b5 100644 --- a/pkgs/applications/science/logic/formula/nuget.nix +++ b/pkgs/applications/science/logic/formula/nuget.nix @@ -1,23 +1,30 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Antlr4.Runtime.Standard"; 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version = "4.3.0"; sha256 = "0jvfn7j22l3mm28qjy3rcw287y9h65ha4m940waaxah07jnbzrhn"; }) (fetchNuGet { pname = "System.Security.Cryptography.Algorithms"; version = "4.3.0"; sha256 = "03sq183pfl5kp7gkvq77myv7kbpdnq3y0xj7vi4q1kaw54sny0ml"; }) (fetchNuGet { pname = "System.Security.Cryptography.Cng"; version = "4.3.0"; sha256 = "1k468aswafdgf56ab6yrn7649kfqx2wm9aslywjam1hdmk5yypmv"; }) (fetchNuGet { pname = "System.Security.Cryptography.Csp"; version = "4.3.0"; sha256 = "1x5wcrddf2s3hb8j78cry7yalca4lb5vfnkrysagbn6r9x6xvrx1"; }) @@ -104,31 +96,16 @@ (fetchNuGet { pname = "System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0givpvvj8yc7gv4lhb6s1prq6p2c4147204a0wib89inqzd87gqc"; }) (fetchNuGet { pname = "System.Security.Cryptography.Primitives"; version = "4.3.0"; sha256 = "0pyzncsv48zwly3lw4f2dayqswcfvdwq2nz0dgwmi7fj3pn64wby"; }) (fetchNuGet { pname = "System.Security.Cryptography.X509Certificates"; version = "4.3.0"; sha256 = "0valjcz5wksbvijylxijjxb1mp38mdhv03r533vnx1q3ikzdav9h"; 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}) ] diff --git a/pkgs/applications/science/logic/petrinizer/default.nix b/pkgs/applications/science/logic/petrinizer/default.nix index 62d259f831871..9fd20e3ed4afd 100644 --- a/pkgs/applications/science/logic/petrinizer/default.nix +++ b/pkgs/applications/science/logic/petrinizer/default.nix @@ -24,4 +24,8 @@ mkDerivation rec { license = lib.licenses.gpl3; maintainers = with lib.maintainers; [ raskin ]; inherit (sbv_7_13.meta) platforms; + + # dependency sbv no longer builds + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/pkgs/applications/science/machine-learning/streamlit/default.nix b/pkgs/applications/science/machine-learning/streamlit/default.nix index 189c4cf97d3bf..9479011d5f149 100755 --- a/pkgs/applications/science/machine-learning/streamlit/default.nix +++ b/pkgs/applications/science/machine-learning/streamlit/default.nix @@ -26,12 +26,12 @@ buildPythonApplication rec { pname = "streamlit"; - version = "1.15.0"; + version = "1.16.0"; format = "wheel"; # source currently requires pipenv src = fetchPypi { inherit pname version format; - hash = "sha256-QtBr3INWBwCBab+FzmvzrjGjwVVHC8NCET9wtRVeVbc="; + hash = "sha256-TBNWIe3m646dbnOMxUltkNZr23g0Dqsestvxl4zHr4A="; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 1c8c565528e9f..83acfcfe9c37d 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -14,11 +14,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "R"; - version = "4.2.1"; + version = "4.2.2"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-TVLbSG0nhI5UYT1O6XetlS7AjOF4B+G1JbEM1ENsZD8="; + sha256 = "sha256-D/YrQuxRr6VxPK7nxP3noMRZQLo5vvjFyUh/7wyVPfU="; }; dontUseImakeConfigure = true; @@ -32,7 +32,6 @@ stdenv.mkDerivation rec { patches = [ ./no-usr-local-search-paths.patch - ./test-reg-packages.patch ]; # Test of the examples for package 'tcltk' fails in Darwin sandbox. See: diff --git a/pkgs/applications/science/math/R/test-reg-packages.patch b/pkgs/applications/science/math/R/test-reg-packages.patch deleted file mode 100644 index 0125565a7997f..0000000000000 --- a/pkgs/applications/science/math/R/test-reg-packages.patch +++ /dev/null @@ -1,15 +0,0 @@ -Upper bounds shifts due to extra warnings re. internet connectivity. - -diff --git a/tests/reg-packages.R b/tests/reg-packages.R -index c9962ce..a40b0fa 100644 ---- a/tests/reg-packages.R -+++ b/tests/reg-packages.R -@@ -260,7 +260,7 @@ stopifnot(exprs = { - (lenN <- length(print(iN <- grep("^[1-9][0-9]:", tlines)))) >= 2 - iN - iw == seq_len(lenN) # these (3) lines come immediately after 'Warning', - ## and "related" to the some 'missing .. paren' above: -- 8 <= print(iw - i) & iw - i <= 20 # see ~14 -+ 8 <= print(iw - i) & iw - i <= 22 # see ~14 - }) ## failed in R <= 4.1.1 - - diff --git a/pkgs/applications/science/math/gap/default.nix b/pkgs/applications/science/math/gap/default.nix index c65507228f82b..677e7d9a0d96c 100644 --- a/pkgs/applications/science/math/gap/default.nix +++ b/pkgs/applications/science/math/gap/default.nix @@ -66,11 +66,11 @@ in stdenv.mkDerivation rec { pname = "gap"; # https://www.gap-system.org/Releases/ - version = "4.12.1"; + version = "4.12.2"; src = fetchurl { url = "https://github.com/gap-system/gap/releases/download/v${version}/gap-${version}.tar.gz"; - sha256 = "sha256-+evvEe4xshDONuPHCWB0K04lMoK71ScK3JMkJzySsBY="; + sha256 = "sha256-ZyMIdF63iiIklO6N1nhu3VvDMUVvzGRWrAZL2yjVh6g="; }; # remove all non-essential packages (which take up a lot of space) diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix index 204b3b7ba5fe6..134b075ea1a43 100644 --- a/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "qalculate-gtk"; - version = "4.4.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "qalculate-gtk"; rev = "v${version}"; - sha256 = "sha256-gXzGjELVcZ7LIOCu+Nub6K+zx8b6InkZk2NTfDHw8/E="; + sha256 = "sha256-NRoHmQw20NfZtZVzckh8eigJ4s2RUcQRb8w8fLh5yeQ="; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/science/math/qalculate-qt/default.nix b/pkgs/applications/science/math/qalculate-qt/default.nix index 6050438e1d922..5571286d542cf 100644 --- a/pkgs/applications/science/math/qalculate-qt/default.nix +++ b/pkgs/applications/science/math/qalculate-qt/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "qalculate-qt"; - version = "4.4.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "qalculate-qt"; rev = "v${version}"; - sha256 = "sha256-C3alvl8hLxUy+soSjfxlNQ++QTcU9Gong1ydVpu8xGs="; + sha256 = "sha256-oUteOAtNjmYzHeIg4xdMAlMW/lLRV0DZCK1RqHVvYEQ="; }; nativeBuildInputs = [ qmake intltool pkg-config wrapQtAppsHook ]; diff --git a/pkgs/applications/search/recoll/default.nix b/pkgs/applications/search/recoll/default.nix index 4117c8ac78a98..ee258373dc33b 100644 --- a/pkgs/applications/search/recoll/default.nix +++ b/pkgs/applications/search/recoll/default.nix @@ -35,11 +35,11 @@ mkDerivation rec { pname = "recoll"; - version = "1.32.7"; + version = "1.33.2"; src = fetchurl { url = "https://www.lesbonscomptes.com/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-ygim9LsLUZv5FaBiqbeq3E80NHPMHweJVwggjWYzfbo="; + sha256 = "sha256-ql4VHiblIn8uihUbF1htPnpvjw0qMxdzW8HLGlUrZW0="; }; configureFlags = [ "--enable-recollq" "--disable-webkit" "--without-systemd" ] diff --git a/pkgs/applications/search/recoll/fix-datadir.patch b/pkgs/applications/search/recoll/fix-datadir.patch index 3b316f4d90c6e..7d5471b636e8e 100644 --- a/pkgs/applications/search/recoll/fix-datadir.patch +++ b/pkgs/applications/search/recoll/fix-datadir.patch @@ -1,13 +1,13 @@ diff --git a/utils/rclutil.cpp b/utils/rclutil.cpp -index 60ff5fb..4a59ccc 100644 +index 6bafc119..d997cd17 100644 --- a/utils/rclutil.cpp +++ b/utils/rclutil.cpp @@ -279,7 +279,7 @@ const string& path_pkgdatadir() "a subfolder of the installation directory. \n" "Please set the RECOLL_DATADIR environment variable to point to it\n" "(e.g. setx RECOLL_DATADIR \"C:/Program Files (X86)/Recoll/Share)\"\n"; --#elif defined(__APPLE__) && !defined(MACPORTS) && !defined(HOMEBREW) -+#elif defined(__APPLE__) && !defined(MACPORTS) && !defined(HOMEBREW) && !defined(NIXPKGS) - uint32_t size = 0; - _NSGetExecutablePath(nullptr, &size); - char *path= (char*)malloc(size+1); +-#elif defined(__APPLE__) && defined(RECOLL_AS_MAC_BUNDLE) ++#elif defined(__APPLE__) && defined(RECOLL_AS_MAC_BUNDLE) && defined(NIXPKGS) + // The package manager builds (Macports, Homebrew, Nixpkgs ...) all arrange to set a proper + // compiled value for RECOLL_DATADIR. We can't do this when building a native bundle with + // QCreator, in which case we use the executable location. diff --git a/pkgs/applications/terminal-emulators/terminator/default.nix b/pkgs/applications/terminal-emulators/terminator/default.nix index 0f1dd5ddd064b..7cc1b23a60ac7 100644 --- a/pkgs/applications/terminal-emulators/terminator/default.nix +++ b/pkgs/applications/terminal-emulators/terminator/default.nix @@ -14,13 +14,13 @@ python3.pkgs.buildPythonApplication rec { pname = "terminator"; - version = "2.1.1"; + version = "2.1.2"; src = fetchFromGitHub { owner = "gnome-terminator"; repo = "terminator"; rev = "v${version}"; - sha256 = "1pfrzna30xv9yri6dsny1j5k35417m4hsg97c455vssywyl9w4jr"; + hash = "sha256-dN9+6VGIdIyY52nm2BMONeb+WV7UGL68frjnHRxRzTU="; }; nativeBuildInputs = [ @@ -70,6 +70,7 @@ python3.pkgs.buildPythonApplication rec { quadkonsole, etc. in that the main focus is arranging terminals in grids (tabs is the most common default method, which Terminator also supports). ''; + changelog = "https://github.com/gnome-terminator/terminator/releases/tag/v${version}"; homepage = "https://github.com/gnome-terminator/terminator"; license = licenses.gpl2; maintainers = with maintainers; [ bjornfor ]; diff --git a/pkgs/applications/version-management/git-and-tools/bfg-repo-cleaner/default.nix b/pkgs/applications/version-management/bfg-repo-cleaner/default.nix index a759c1e860051..a759c1e860051 100644 --- a/pkgs/applications/version-management/git-and-tools/bfg-repo-cleaner/default.nix +++ b/pkgs/applications/version-management/bfg-repo-cleaner/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/bit/default.nix b/pkgs/applications/version-management/bit/default.nix index c3524417829e9..c3524417829e9 100644 --- a/pkgs/applications/version-management/git-and-tools/bit/default.nix +++ b/pkgs/applications/version-management/bit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile b/pkgs/applications/version-management/bitbucket-server-cli/Gemfile index 8ed3251547116..8ed3251547116 100644 --- a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile +++ b/pkgs/applications/version-management/bitbucket-server-cli/Gemfile diff --git a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile.lock b/pkgs/applications/version-management/bitbucket-server-cli/Gemfile.lock index 27a6e2c8dd03a..27a6e2c8dd03a 100644 --- a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile.lock +++ b/pkgs/applications/version-management/bitbucket-server-cli/Gemfile.lock diff --git a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/default.nix b/pkgs/applications/version-management/bitbucket-server-cli/default.nix index ecbe064826c5f..ecbe064826c5f 100644 --- a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/default.nix +++ b/pkgs/applications/version-management/bitbucket-server-cli/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/gemset.nix b/pkgs/applications/version-management/bitbucket-server-cli/gemset.nix index 844291b09054d..844291b09054d 100644 --- a/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/gemset.nix +++ b/pkgs/applications/version-management/bitbucket-server-cli/gemset.nix diff --git a/pkgs/applications/version-management/git-and-tools/bump2version/default.nix b/pkgs/applications/version-management/bump2version/default.nix index ffb9455bd19f9..ffb9455bd19f9 100644 --- a/pkgs/applications/version-management/git-and-tools/bump2version/default.nix +++ b/pkgs/applications/version-management/bump2version/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/cgit/common.nix b/pkgs/applications/version-management/cgit/common.nix index 0cbc04b7bcc23..0cbc04b7bcc23 100644 --- a/pkgs/applications/version-management/git-and-tools/cgit/common.nix +++ b/pkgs/applications/version-management/cgit/common.nix diff --git a/pkgs/applications/version-management/git-and-tools/cgit/default.nix b/pkgs/applications/version-management/cgit/default.nix index f6a0af102303b..f6a0af102303b 100644 --- a/pkgs/applications/version-management/git-and-tools/cgit/default.nix +++ b/pkgs/applications/version-management/cgit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/cgit/pink.nix b/pkgs/applications/version-management/cgit/pink.nix index 73523a2d77afd..73523a2d77afd 100644 --- a/pkgs/applications/version-management/git-and-tools/cgit/pink.nix +++ b/pkgs/applications/version-management/cgit/pink.nix diff --git a/pkgs/applications/version-management/git-and-tools/conform/default.nix b/pkgs/applications/version-management/conform/default.nix index 67741d55ceb22..67741d55ceb22 100644 --- a/pkgs/applications/version-management/git-and-tools/conform/default.nix +++ b/pkgs/applications/version-management/conform/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/darcs-to-git/default.nix b/pkgs/applications/version-management/darcs-to-git/default.nix index 895e4610f4fc0..895e4610f4fc0 100644 --- a/pkgs/applications/version-management/git-and-tools/darcs-to-git/default.nix +++ b/pkgs/applications/version-management/darcs-to-git/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/delta/default.nix b/pkgs/applications/version-management/delta/default.nix index 1bdd028d8101b..1bdd028d8101b 100644 --- a/pkgs/applications/version-management/git-and-tools/delta/default.nix +++ b/pkgs/applications/version-management/delta/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/diff-so-fancy/default.nix b/pkgs/applications/version-management/diff-so-fancy/default.nix index 0d346e3598d44..0d346e3598d44 100644 --- a/pkgs/applications/version-management/git-and-tools/diff-so-fancy/default.nix +++ b/pkgs/applications/version-management/diff-so-fancy/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/fast-export/default.nix b/pkgs/applications/version-management/fast-export/default.nix index 9d726795c6200..9d726795c6200 100644 --- a/pkgs/applications/version-management/git-and-tools/fast-export/default.nix +++ b/pkgs/applications/version-management/fast-export/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gex/default.nix b/pkgs/applications/version-management/gex/default.nix index dbcc63419b750..dbcc63419b750 100644 --- a/pkgs/applications/version-management/git-and-tools/gex/default.nix +++ b/pkgs/applications/version-management/gex/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gfold/default.nix b/pkgs/applications/version-management/gfold/default.nix index 88fa12ae12ade..88fa12ae12ade 100644 --- a/pkgs/applications/version-management/git-and-tools/gfold/default.nix +++ b/pkgs/applications/version-management/gfold/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gg/default.nix b/pkgs/applications/version-management/gg/default.nix index 032c461a74ce8..032c461a74ce8 100644 --- a/pkgs/applications/version-management/git-and-tools/gg/default.nix +++ b/pkgs/applications/version-management/gg/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gh/default.nix b/pkgs/applications/version-management/gh/default.nix index 7d5a9cc6d6089..7d5a9cc6d6089 100644 --- a/pkgs/applications/version-management/git-and-tools/gh/default.nix +++ b/pkgs/applications/version-management/gh/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/ghorg/default.nix b/pkgs/applications/version-management/ghorg/default.nix index 22d9ada544c85..22d9ada544c85 100644 --- a/pkgs/applications/version-management/git-and-tools/ghorg/default.nix +++ b/pkgs/applications/version-management/ghorg/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/ghq/default.nix b/pkgs/applications/version-management/ghq/default.nix index 26632abe4694b..26632abe4694b 100644 --- a/pkgs/applications/version-management/git-and-tools/ghq/default.nix +++ b/pkgs/applications/version-management/ghq/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/ghr/default.nix b/pkgs/applications/version-management/ghr/default.nix index fd433bbfc581e..fd433bbfc581e 100644 --- a/pkgs/applications/version-management/git-and-tools/ghr/default.nix +++ b/pkgs/applications/version-management/ghr/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix b/pkgs/applications/version-management/git-absorb/default.nix index d80e481bd5bfb..d80e481bd5bfb 100644 --- a/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix +++ b/pkgs/applications/version-management/git-absorb/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-aggregator/default.nix b/pkgs/applications/version-management/git-aggregator/default.nix index 9b2465366f672..9b2465366f672 100644 --- a/pkgs/applications/version-management/git-and-tools/git-aggregator/default.nix +++ b/pkgs/applications/version-management/git-aggregator/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitstats/default.nix b/pkgs/applications/version-management/git-and-tools/gitstats/default.nix deleted file mode 100644 index 6cfcb0077427f..0000000000000 --- a/pkgs/applications/version-management/git-and-tools/gitstats/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, perl, python2, gnuplot, coreutils, gnugrep }: - -stdenv.mkDerivation rec { - pname = "gitstats"; - version = "2016-01-08"; - - # upstream does not make releases - src = fetchFromGitHub { - owner = "hoxu"; - repo = "gitstats"; - rev = "55c5c285558c410bb35ebf421245d320ab9ee9fa"; - sha256 = "sha256-qUQB3aCRbPkbMoMf39kPQ0vil8RjXL8RqjdTryfkzK0="; - }; - - nativeBuildInputs = [ perl ]; - - buildInputs = [ python2 ]; - - strictDeps = true; - - postPatch = '' - sed -e "s|gnuplot_cmd = .*|gnuplot_cmd = '${gnuplot}/bin/gnuplot'|" \ - -e "s|\<wc\>|${coreutils}/bin/wc|g" \ - -e "s|\<grep\>|${gnugrep}/bin/grep|g" \ - -i gitstats - ''; - - buildPhase = '' - make man VERSION="${version}" - ''; - - installPhase = '' - make install PREFIX="$out" VERSION="${version}" - install -Dm644 doc/gitstats.1 "$out"/share/man/man1/gitstats.1 - ''; - - meta = with lib; { - homepage = "http://gitstats.sourceforge.net/"; - description = "Git history statistics generator"; - license = licenses.gpl2Plus; - platforms = platforms.all; - maintainers = [ maintainers.bjornfor ]; - }; -} diff --git a/pkgs/applications/version-management/git-and-tools/git-annex-metadata-gui/default.nix b/pkgs/applications/version-management/git-annex-metadata-gui/default.nix index 4d57820c84eb6..4d57820c84eb6 100644 --- a/pkgs/applications/version-management/git-and-tools/git-annex-metadata-gui/default.nix +++ b/pkgs/applications/version-management/git-annex-metadata-gui/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-annex-remote-dbx/default.nix b/pkgs/applications/version-management/git-annex-remote-dbx/default.nix index addfd1f5041b1..addfd1f5041b1 100644 --- a/pkgs/applications/version-management/git-and-tools/git-annex-remote-dbx/default.nix +++ b/pkgs/applications/version-management/git-annex-remote-dbx/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-annex-remote-googledrive/default.nix b/pkgs/applications/version-management/git-annex-remote-googledrive/default.nix index 16c5b49406f67..16c5b49406f67 100644 --- a/pkgs/applications/version-management/git-and-tools/git-annex-remote-googledrive/default.nix +++ b/pkgs/applications/version-management/git-annex-remote-googledrive/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-annex-remote-rclone/default.nix b/pkgs/applications/version-management/git-annex-remote-rclone/default.nix index e05bed928889d..e05bed928889d 100644 --- a/pkgs/applications/version-management/git-and-tools/git-annex-remote-rclone/default.nix +++ b/pkgs/applications/version-management/git-annex-remote-rclone/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-annex-utils/default.nix b/pkgs/applications/version-management/git-annex-utils/default.nix index 07af33951dfb4..07af33951dfb4 100644 --- a/pkgs/applications/version-management/git-and-tools/git-annex-utils/default.nix +++ b/pkgs/applications/version-management/git-annex-utils/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-appraise/default.nix b/pkgs/applications/version-management/git-appraise/default.nix index 8b5844fb76ce9..8b5844fb76ce9 100644 --- a/pkgs/applications/version-management/git-and-tools/git-appraise/default.nix +++ b/pkgs/applications/version-management/git-appraise/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-backup/default.nix b/pkgs/applications/version-management/git-backup/default.nix index 8c45fdef3f7d7..8c45fdef3f7d7 100644 --- a/pkgs/applications/version-management/git-and-tools/git-backup/default.nix +++ b/pkgs/applications/version-management/git-backup/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix b/pkgs/applications/version-management/git-big-picture/default.nix index decd3c51a392f..decd3c51a392f 100644 --- a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix +++ b/pkgs/applications/version-management/git-big-picture/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-branchless/default.nix b/pkgs/applications/version-management/git-branchless/default.nix index 1a961b422b249..1a961b422b249 100644 --- a/pkgs/applications/version-management/git-and-tools/git-branchless/default.nix +++ b/pkgs/applications/version-management/git-branchless/default.nix diff --git a/pkgs/applications/version-management/git-branchstack/default.nix b/pkgs/applications/version-management/git-branchstack/default.nix new file mode 100644 index 0000000000000..b536642cbf55e --- /dev/null +++ b/pkgs/applications/version-management/git-branchstack/default.nix @@ -0,0 +1,26 @@ +{ lib +, fetchPypi +, buildPythonApplication +, git-revise +}: + +buildPythonApplication rec { + pname = "git-branchstack"; + version = "0.2.0"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-gja93LOcVCQ6l+Cygvsm+3uomvxtvUl6t23GIb/tKyQ="; + }; + + buildInputs = [ + git-revise + ]; + + meta = with lib; { + homepage = "https://github.com/krobelus/git-branchstack"; + description = "Efficiently manage Git branches without leaving your local branch"; + license = licenses.mit; + maintainers = [ maintainers.AndersonTorres ]; + }; +} diff --git a/pkgs/applications/version-management/git-and-tools/git-bug/default.nix b/pkgs/applications/version-management/git-bug/default.nix index b85681a73cd94..b85681a73cd94 100644 --- a/pkgs/applications/version-management/git-and-tools/git-bug/default.nix +++ b/pkgs/applications/version-management/git-bug/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-chglog/default.nix b/pkgs/applications/version-management/git-chglog/default.nix index b427acf960ec7..b427acf960ec7 100644 --- a/pkgs/applications/version-management/git-and-tools/git-chglog/default.nix +++ b/pkgs/applications/version-management/git-chglog/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-cinnabar/default.nix b/pkgs/applications/version-management/git-cinnabar/default.nix index 42a22f4866239..42a22f4866239 100644 --- a/pkgs/applications/version-management/git-and-tools/git-cinnabar/default.nix +++ b/pkgs/applications/version-management/git-cinnabar/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-cliff/default.nix b/pkgs/applications/version-management/git-cliff/default.nix index efc12299f941d..efc12299f941d 100644 --- a/pkgs/applications/version-management/git-and-tools/git-cliff/default.nix +++ b/pkgs/applications/version-management/git-cliff/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-codeowners/default.nix b/pkgs/applications/version-management/git-codeowners/default.nix index 862461827eb17..862461827eb17 100644 --- a/pkgs/applications/version-management/git-and-tools/git-codeowners/default.nix +++ b/pkgs/applications/version-management/git-codeowners/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix b/pkgs/applications/version-management/git-codereview/default.nix index af641d241b849..af641d241b849 100644 --- a/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix +++ b/pkgs/applications/version-management/git-codereview/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-cola/default.nix b/pkgs/applications/version-management/git-cola/default.nix index 07d36cba891b1..07d36cba891b1 100644 --- a/pkgs/applications/version-management/git-and-tools/git-cola/default.nix +++ b/pkgs/applications/version-management/git-cola/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-crecord/default.nix b/pkgs/applications/version-management/git-crecord/default.nix index 1ad75e75b7bfd..1ad75e75b7bfd 100644 --- a/pkgs/applications/version-management/git-and-tools/git-crecord/default.nix +++ b/pkgs/applications/version-management/git-crecord/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-credential-1password/default.nix b/pkgs/applications/version-management/git-credential-1password/default.nix index 8d180f5176a2e..8d180f5176a2e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-credential-1password/default.nix +++ b/pkgs/applications/version-management/git-credential-1password/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-credential-keepassxc/default.nix b/pkgs/applications/version-management/git-credential-keepassxc/default.nix index 27998f1c9c15b..27998f1c9c15b 100644 --- a/pkgs/applications/version-management/git-and-tools/git-credential-keepassxc/default.nix +++ b/pkgs/applications/version-management/git-credential-keepassxc/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-crypt/default.nix b/pkgs/applications/version-management/git-crypt/default.nix index 49dcb14fc0139..49dcb14fc0139 100644 --- a/pkgs/applications/version-management/git-and-tools/git-crypt/default.nix +++ b/pkgs/applications/version-management/git-crypt/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-delete-merged-branches/default.nix b/pkgs/applications/version-management/git-delete-merged-branches/default.nix index 7d3d1b6b2c692..dc9b251537ec8 100644 --- a/pkgs/applications/version-management/git-and-tools/git-delete-merged-branches/default.nix +++ b/pkgs/applications/version-management/git-delete-merged-branches/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonApplication rec { pname = "git-delete-merged-branches"; - version = "7.3.1"; + version = "7.4.0"; src = fetchFromGitHub { owner = "hartwork"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-9Y4n8OWZMwGoCunqwWtkDeDvRcJ4aepw1vgMXFHkhx0="; + sha256 = "sha256-17uFV3pjklqVW5ofeR54mgMh+q3uUCdqZG00Cc+4zFQ="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/applications/version-management/git-and-tools/git-extras/default.nix b/pkgs/applications/version-management/git-extras/default.nix index 937a771b1e42e..937a771b1e42e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-extras/default.nix +++ b/pkgs/applications/version-management/git-extras/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile b/pkgs/applications/version-management/git-fame/Gemfile index 17373f02b44dd..17373f02b44dd 100644 --- a/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile +++ b/pkgs/applications/version-management/git-fame/Gemfile diff --git a/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile.lock b/pkgs/applications/version-management/git-fame/Gemfile.lock index 12c58d72103ac..12c58d72103ac 100644 --- a/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile.lock +++ b/pkgs/applications/version-management/git-fame/Gemfile.lock diff --git a/pkgs/applications/version-management/git-and-tools/git-fame/default.nix b/pkgs/applications/version-management/git-fame/default.nix index 4dc9c4f8453d6..4dc9c4f8453d6 100644 --- a/pkgs/applications/version-management/git-and-tools/git-fame/default.nix +++ b/pkgs/applications/version-management/git-fame/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-fame/gemset.nix b/pkgs/applications/version-management/git-fame/gemset.nix index 07dd36ac68a04..07dd36ac68a04 100644 --- a/pkgs/applications/version-management/git-and-tools/git-fame/gemset.nix +++ b/pkgs/applications/version-management/git-fame/gemset.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-fire/default.nix b/pkgs/applications/version-management/git-fire/default.nix index bc7e9f4840b71..bc7e9f4840b71 100644 --- a/pkgs/applications/version-management/git-and-tools/git-fire/default.nix +++ b/pkgs/applications/version-management/git-fire/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-ftp/default.nix b/pkgs/applications/version-management/git-ftp/default.nix index 57b5e3c463724..57b5e3c463724 100644 --- a/pkgs/applications/version-management/git-and-tools/git-ftp/default.nix +++ b/pkgs/applications/version-management/git-ftp/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-gone/default.nix b/pkgs/applications/version-management/git-gone/default.nix index fd93c337eac0e..fd93c337eac0e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-gone/default.nix +++ b/pkgs/applications/version-management/git-gone/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-hound/default.nix b/pkgs/applications/version-management/git-hound/default.nix index 463d550cbcabb..463d550cbcabb 100644 --- a/pkgs/applications/version-management/git-and-tools/git-hound/default.nix +++ b/pkgs/applications/version-management/git-hound/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-hub/default.nix b/pkgs/applications/version-management/git-hub/default.nix index 279ae81b10108..279ae81b10108 100644 --- a/pkgs/applications/version-management/git-and-tools/git-hub/default.nix +++ b/pkgs/applications/version-management/git-hub/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix b/pkgs/applications/version-management/git-ignore/default.nix index b6595a7278ea2..b6595a7278ea2 100644 --- a/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix +++ b/pkgs/applications/version-management/git-ignore/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-imerge/default.nix b/pkgs/applications/version-management/git-imerge/default.nix index e1caede77d8e1..e1caede77d8e1 100644 --- a/pkgs/applications/version-management/git-and-tools/git-imerge/default.nix +++ b/pkgs/applications/version-management/git-imerge/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-interactive-rebase-tool/default.nix b/pkgs/applications/version-management/git-interactive-rebase-tool/default.nix index 97e2cf0537ac9..97e2cf0537ac9 100644 --- a/pkgs/applications/version-management/git-and-tools/git-interactive-rebase-tool/default.nix +++ b/pkgs/applications/version-management/git-interactive-rebase-tool/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-lfs/default.nix b/pkgs/applications/version-management/git-lfs/default.nix index bbb7d29422aa7..bbb7d29422aa7 100644 --- a/pkgs/applications/version-management/git-and-tools/git-lfs/default.nix +++ b/pkgs/applications/version-management/git-lfs/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-machete/default.nix b/pkgs/applications/version-management/git-machete/default.nix index a41380380bcc7..a41380380bcc7 100644 --- a/pkgs/applications/version-management/git-and-tools/git-machete/default.nix +++ b/pkgs/applications/version-management/git-machete/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-my/default.nix b/pkgs/applications/version-management/git-my/default.nix index d8ce7a42bb591..d8ce7a42bb591 100644 --- a/pkgs/applications/version-management/git-and-tools/git-my/default.nix +++ b/pkgs/applications/version-management/git-my/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-nomad/default.nix b/pkgs/applications/version-management/git-nomad/default.nix index 04ba2ca849a6e..04ba2ca849a6e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-nomad/default.nix +++ b/pkgs/applications/version-management/git-nomad/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-octopus/default.nix b/pkgs/applications/version-management/git-octopus/default.nix index 7b8b5fed90f44..7b8b5fed90f44 100644 --- a/pkgs/applications/version-management/git-and-tools/git-octopus/default.nix +++ b/pkgs/applications/version-management/git-octopus/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-open/default.nix b/pkgs/applications/version-management/git-open/default.nix index 2c57ca1f84011..2c57ca1f84011 100644 --- a/pkgs/applications/version-management/git-and-tools/git-open/default.nix +++ b/pkgs/applications/version-management/git-open/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-privacy/default.nix b/pkgs/applications/version-management/git-privacy/default.nix index d162f9ce20ba5..d162f9ce20ba5 100644 --- a/pkgs/applications/version-management/git-and-tools/git-privacy/default.nix +++ b/pkgs/applications/version-management/git-privacy/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-publish/default.nix b/pkgs/applications/version-management/git-publish/default.nix index 0f0eeff156b06..0f0eeff156b06 100644 --- a/pkgs/applications/version-management/git-and-tools/git-publish/default.nix +++ b/pkgs/applications/version-management/git-publish/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-quick-stats/default.nix b/pkgs/applications/version-management/git-quick-stats/default.nix index 336c24819baf0..336c24819baf0 100644 --- a/pkgs/applications/version-management/git-and-tools/git-quick-stats/default.nix +++ b/pkgs/applications/version-management/git-quick-stats/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-quickfix/default.nix b/pkgs/applications/version-management/git-quickfix/default.nix index 4b4319f8cd7cc..4b4319f8cd7cc 100644 --- a/pkgs/applications/version-management/git-and-tools/git-quickfix/default.nix +++ b/pkgs/applications/version-management/git-quickfix/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-radar/default.nix b/pkgs/applications/version-management/git-radar/default.nix index 1cd14aa969278..1cd14aa969278 100644 --- a/pkgs/applications/version-management/git-and-tools/git-radar/default.nix +++ b/pkgs/applications/version-management/git-radar/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-recent/default.nix b/pkgs/applications/version-management/git-recent/default.nix index 1a1811b2f4384..1a1811b2f4384 100644 --- a/pkgs/applications/version-management/git-and-tools/git-recent/default.nix +++ b/pkgs/applications/version-management/git-recent/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-remote-codecommit/default.nix b/pkgs/applications/version-management/git-remote-codecommit/default.nix index 8ada5cc42f54e..8ada5cc42f54e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-remote-codecommit/default.nix +++ b/pkgs/applications/version-management/git-remote-codecommit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-remote-gcrypt/default.nix b/pkgs/applications/version-management/git-remote-gcrypt/default.nix index 8f3155ce0546b..8f3155ce0546b 100644 --- a/pkgs/applications/version-management/git-and-tools/git-remote-gcrypt/default.nix +++ b/pkgs/applications/version-management/git-remote-gcrypt/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-remote-hg/default.nix b/pkgs/applications/version-management/git-remote-hg/default.nix index b76f7515eba6c..b76f7515eba6c 100644 --- a/pkgs/applications/version-management/git-and-tools/git-remote-hg/default.nix +++ b/pkgs/applications/version-management/git-remote-hg/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-reparent/default.nix b/pkgs/applications/version-management/git-reparent/default.nix index ec1c44b96134e..ec1c44b96134e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-reparent/default.nix +++ b/pkgs/applications/version-management/git-reparent/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-repo-updater/default.nix b/pkgs/applications/version-management/git-repo-updater/default.nix index ebea57c1552a8..ebea57c1552a8 100644 --- a/pkgs/applications/version-management/git-and-tools/git-repo-updater/default.nix +++ b/pkgs/applications/version-management/git-repo-updater/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-repo/default.nix b/pkgs/applications/version-management/git-repo/default.nix index e47ea6b12dbef..e47ea6b12dbef 100644 --- a/pkgs/applications/version-management/git-and-tools/git-repo/default.nix +++ b/pkgs/applications/version-management/git-repo/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-repo/import-ssl-module.patch b/pkgs/applications/version-management/git-repo/import-ssl-module.patch index efc3d2b1f8a5e..efc3d2b1f8a5e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-repo/import-ssl-module.patch +++ b/pkgs/applications/version-management/git-repo/import-ssl-module.patch diff --git a/pkgs/applications/version-management/git-and-tools/git-review/default.nix b/pkgs/applications/version-management/git-review/default.nix index 2650f330c0a99..2650f330c0a99 100644 --- a/pkgs/applications/version-management/git-and-tools/git-review/default.nix +++ b/pkgs/applications/version-management/git-review/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-secret/default.nix b/pkgs/applications/version-management/git-secret/default.nix index 6293af4642a34..6293af4642a34 100644 --- a/pkgs/applications/version-management/git-and-tools/git-secret/default.nix +++ b/pkgs/applications/version-management/git-secret/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-secrets/default.nix b/pkgs/applications/version-management/git-secrets/default.nix index 154a4048e0a7a..154a4048e0a7a 100644 --- a/pkgs/applications/version-management/git-and-tools/git-secrets/default.nix +++ b/pkgs/applications/version-management/git-secrets/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-series/default.nix b/pkgs/applications/version-management/git-series/default.nix index 31d1c635512c4..31d1c635512c4 100644 --- a/pkgs/applications/version-management/git-and-tools/git-series/default.nix +++ b/pkgs/applications/version-management/git-series/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-sizer/default.nix b/pkgs/applications/version-management/git-sizer/default.nix index ed7239b80cb33..ed7239b80cb33 100644 --- a/pkgs/applications/version-management/git-and-tools/git-sizer/default.nix +++ b/pkgs/applications/version-management/git-sizer/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-standup/default.nix b/pkgs/applications/version-management/git-standup/default.nix index 2bbf7840138dd..2bbf7840138dd 100644 --- a/pkgs/applications/version-management/git-and-tools/git-standup/default.nix +++ b/pkgs/applications/version-management/git-standup/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-stree/default.nix b/pkgs/applications/version-management/git-stree/default.nix index aa53529933ff1..aa53529933ff1 100644 --- a/pkgs/applications/version-management/git-and-tools/git-stree/default.nix +++ b/pkgs/applications/version-management/git-stree/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-subrepo/default.nix b/pkgs/applications/version-management/git-subrepo/default.nix index 23b8fd95cfd67..23b8fd95cfd67 100644 --- a/pkgs/applications/version-management/git-and-tools/git-subrepo/default.nix +++ b/pkgs/applications/version-management/git-subrepo/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-subset/default.nix b/pkgs/applications/version-management/git-subset/default.nix index 53db1c01eefb7..53db1c01eefb7 100644 --- a/pkgs/applications/version-management/git-and-tools/git-subset/default.nix +++ b/pkgs/applications/version-management/git-subset/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-subtrac/default.nix b/pkgs/applications/version-management/git-subtrac/default.nix index 4e9c3b7a5ccc0..4e9c3b7a5ccc0 100644 --- a/pkgs/applications/version-management/git-and-tools/git-subtrac/default.nix +++ b/pkgs/applications/version-management/git-subtrac/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-sync/default.nix b/pkgs/applications/version-management/git-sync/default.nix index 9180db63a8139..9180db63a8139 100644 --- a/pkgs/applications/version-management/git-and-tools/git-sync/default.nix +++ b/pkgs/applications/version-management/git-sync/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-team/default.nix b/pkgs/applications/version-management/git-team/default.nix index afce41e15d19a..afce41e15d19a 100644 --- a/pkgs/applications/version-management/git-and-tools/git-team/default.nix +++ b/pkgs/applications/version-management/git-team/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-test/default.nix b/pkgs/applications/version-management/git-test/default.nix index 624ce5616909e..624ce5616909e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-test/default.nix +++ b/pkgs/applications/version-management/git-test/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-town/default.nix b/pkgs/applications/version-management/git-town/default.nix index abca61358d99b..abca61358d99b 100644 --- a/pkgs/applications/version-management/git-and-tools/git-town/default.nix +++ b/pkgs/applications/version-management/git-town/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-trim/default.nix b/pkgs/applications/version-management/git-trim/default.nix index a20c750ade10d..a20c750ade10d 100644 --- a/pkgs/applications/version-management/git-and-tools/git-trim/default.nix +++ b/pkgs/applications/version-management/git-trim/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-up/default.nix b/pkgs/applications/version-management/git-up/default.nix index 71ae40e25d35b..71ae40e25d35b 100644 --- a/pkgs/applications/version-management/git-and-tools/git-up/default.nix +++ b/pkgs/applications/version-management/git-up/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix b/pkgs/applications/version-management/git-vanity-hash/default.nix index a77bdd4933008..a77bdd4933008 100644 --- a/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix +++ b/pkgs/applications/version-management/git-vanity-hash/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-vendor/default.nix b/pkgs/applications/version-management/git-vendor/default.nix index a4e0290d31024..a4e0290d31024 100644 --- a/pkgs/applications/version-management/git-and-tools/git-vendor/default.nix +++ b/pkgs/applications/version-management/git-vendor/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-when-merged/default.nix b/pkgs/applications/version-management/git-when-merged/default.nix index d020f351fedf5..d020f351fedf5 100644 --- a/pkgs/applications/version-management/git-and-tools/git-when-merged/default.nix +++ b/pkgs/applications/version-management/git-when-merged/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix b/pkgs/applications/version-management/git-workspace/default.nix index 6ccfafeb70ee9..6ccfafeb70ee9 100644 --- a/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix +++ b/pkgs/applications/version-management/git-workspace/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git/default.nix b/pkgs/applications/version-management/git/default.nix index 2d63ae403791c..2d63ae403791c 100644 --- a/pkgs/applications/version-management/git-and-tools/git/default.nix +++ b/pkgs/applications/version-management/git/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/git/docbook2texi.patch b/pkgs/applications/version-management/git/docbook2texi.patch index f8f8ab86a9ce5..f8f8ab86a9ce5 100644 --- a/pkgs/applications/version-management/git-and-tools/git/docbook2texi.patch +++ b/pkgs/applications/version-management/git/docbook2texi.patch diff --git a/pkgs/applications/version-management/git-and-tools/git/git-send-email-honor-PATH.patch b/pkgs/applications/version-management/git/git-send-email-honor-PATH.patch index c78400847418e..c78400847418e 100644 --- a/pkgs/applications/version-management/git-and-tools/git/git-send-email-honor-PATH.patch +++ b/pkgs/applications/version-management/git/git-send-email-honor-PATH.patch diff --git a/pkgs/applications/version-management/git-and-tools/git/git-sh-i18n.patch b/pkgs/applications/version-management/git/git-sh-i18n.patch index 721f2aa099c44..721f2aa099c44 100644 --- a/pkgs/applications/version-management/git-and-tools/git/git-sh-i18n.patch +++ b/pkgs/applications/version-management/git/git-sh-i18n.patch diff --git a/pkgs/applications/version-management/git-and-tools/git/installCheck-path.patch b/pkgs/applications/version-management/git/installCheck-path.patch index 4b73d11744baf..4b73d11744baf 100644 --- a/pkgs/applications/version-management/git-and-tools/git/installCheck-path.patch +++ b/pkgs/applications/version-management/git/installCheck-path.patch diff --git a/pkgs/applications/version-management/git-and-tools/git/ssh-path.patch b/pkgs/applications/version-management/git/ssh-path.patch index 71cdc694ac315..71cdc694ac315 100644 --- a/pkgs/applications/version-management/git-and-tools/git/ssh-path.patch +++ b/pkgs/applications/version-management/git/ssh-path.patch diff --git a/pkgs/applications/version-management/git-and-tools/git/update.sh b/pkgs/applications/version-management/git/update.sh index 54574722b02b7..54574722b02b7 100755 --- a/pkgs/applications/version-management/git-and-tools/git/update.sh +++ b/pkgs/applications/version-management/git/update.sh diff --git a/pkgs/applications/version-management/git-and-tools/git2cl/default.nix b/pkgs/applications/version-management/git2cl/default.nix index b68179b182bca..b68179b182bca 100644 --- a/pkgs/applications/version-management/git-and-tools/git2cl/default.nix +++ b/pkgs/applications/version-management/git2cl/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gita/default.nix b/pkgs/applications/version-management/gita/default.nix index 6f20e4a44c6fe..6f20e4a44c6fe 100644 --- a/pkgs/applications/version-management/git-and-tools/gita/default.nix +++ b/pkgs/applications/version-management/gita/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitbatch/default.nix b/pkgs/applications/version-management/gitbatch/default.nix index 0eb20db1462ab..0eb20db1462ab 100644 --- a/pkgs/applications/version-management/git-and-tools/gitbatch/default.nix +++ b/pkgs/applications/version-management/gitbatch/default.nix diff --git a/pkgs/applications/version-management/gitea/default.nix b/pkgs/applications/version-management/gitea/default.nix index c0ce50d70dffa..aa394fb452787 100644 --- a/pkgs/applications/version-management/gitea/default.nix +++ b/pkgs/applications/version-management/gitea/default.nix @@ -14,12 +14,12 @@ buildGoPackage rec { pname = "gitea"; - version = "1.17.3"; + version = "1.17.4"; # not fetching directly from the git repo, because that lacks several vendor files for the web UI src = fetchurl { url = "https://dl.gitea.io/gitea/${version}/gitea-src-${version}.tar.gz"; - sha256 = "sha256-NUkEgKt5OETo751UHcocPH7lEIgyBf6Rl/Nz0nbNH3g="; + sha256 = "sha256-koZEr89QhxCf2Dd/7SWiS/ZZoRIBfyu0mbxKknjXPK4="; }; patches = [ diff --git a/pkgs/applications/version-management/git-and-tools/gitflow/default.nix b/pkgs/applications/version-management/gitflow/default.nix index ce612fcd52d31..09ab7031bd235 100644 --- a/pkgs/applications/version-management/git-and-tools/gitflow/default.nix +++ b/pkgs/applications/version-management/gitflow/default.nix @@ -1,6 +1,4 @@ -{ pkgs, lib, stdenv, fetchFromGitHub }: - -with pkgs.lib; +{ lib, stdenv, fetchFromGitHub, makeWrapper, getopt, git, coreutils }: stdenv.mkDerivation rec { pname = "gitflow"; @@ -13,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-kHirHG/bfsU6tKyQ0khNSTyChhzHfzib+HyA3LOtBI8="; }; - nativeBuildInputs = [ pkgs.makeWrapper ]; + nativeBuildInputs = [ makeWrapper ]; preBuild = '' makeFlagsArray+=(prefix="$out") @@ -21,9 +19,9 @@ stdenv.mkDerivation rec { postInstall = '' wrapProgram $out/bin/git-flow \ - --set FLAGS_GETOPT_CMD ${pkgs.getopt}/bin/getopt \ - --suffix PATH : ${pkgs.git}/bin \ - --prefix PATH : ${pkgs.coreutils}/bin + --set FLAGS_GETOPT_CMD ${getopt}/bin/getopt \ + --suffix PATH : ${git}/bin \ + --prefix PATH : ${coreutils}/bin ''; meta = with lib; { diff --git a/pkgs/applications/version-management/git-and-tools/gitless/default.nix b/pkgs/applications/version-management/gitless/default.nix index 31ab40d79478f..31ab40d79478f 100644 --- a/pkgs/applications/version-management/git-and-tools/gitless/default.nix +++ b/pkgs/applications/version-management/gitless/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitlint/default.nix b/pkgs/applications/version-management/gitlint/default.nix index 626739864c713..626739864c713 100644 --- a/pkgs/applications/version-management/git-and-tools/gitlint/default.nix +++ b/pkgs/applications/version-management/gitlint/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitls/default.nix b/pkgs/applications/version-management/gitls/default.nix index 4cda10b380575..4cda10b380575 100644 --- a/pkgs/applications/version-management/git-and-tools/gitls/default.nix +++ b/pkgs/applications/version-management/gitls/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitmux/default.nix b/pkgs/applications/version-management/gitmux/default.nix index 7e66985bb8864..7e66985bb8864 100644 --- a/pkgs/applications/version-management/git-and-tools/gitmux/default.nix +++ b/pkgs/applications/version-management/gitmux/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitnuro/default.nix b/pkgs/applications/version-management/gitnuro/default.nix index db79637ef9ff9..db79637ef9ff9 100644 --- a/pkgs/applications/version-management/git-and-tools/gitnuro/default.nix +++ b/pkgs/applications/version-management/gitnuro/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitoxide/default.nix b/pkgs/applications/version-management/gitoxide/default.nix index d2a51c94727a2..d2a51c94727a2 100644 --- a/pkgs/applications/version-management/git-and-tools/gitoxide/default.nix +++ b/pkgs/applications/version-management/gitoxide/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitsign/default.nix b/pkgs/applications/version-management/gitsign/default.nix index 11a8394a63c49..11a8394a63c49 100644 --- a/pkgs/applications/version-management/git-and-tools/gitsign/default.nix +++ b/pkgs/applications/version-management/gitsign/default.nix diff --git a/pkgs/applications/version-management/gitstats/default.nix b/pkgs/applications/version-management/gitstats/default.nix new file mode 100644 index 0000000000000..d9eaae3ecbca3 --- /dev/null +++ b/pkgs/applications/version-management/gitstats/default.nix @@ -0,0 +1,66 @@ +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, installShellFiles +, perl +, python3 +, gnuplot +, coreutils +, gnugrep +}: + +stdenv.mkDerivation rec { + pname = "gitstats"; + version = "2016-01-08"; + + # upstream does not make releases + src = fetchFromGitHub { + owner = "hoxu"; + repo = "gitstats"; + rev = "55c5c285558c410bb35ebf421245d320ab9ee9fa"; + sha256 = "sha256-qUQB3aCRbPkbMoMf39kPQ0vil8RjXL8RqjdTryfkzK0="; + }; + + patches = [ + # make gitstats compatible with python3 + # https://github.com/hoxu/gitstats/pull/105 + (fetchpatch { + name = "convert-gitstats-to-use-python3.patch"; + url = "https://github.com/hoxu/gitstats/commit/ca415668ce6b739ca9fefba6acd29c63b89f4211.patch"; + hash = "sha256-sgjoj8eQ5CxQBffmhqymsmXb8peuaSbfFoWciLK3LOo="; + }) + ]; + + nativeBuildInputs = [ installShellFiles perl ]; + + buildInputs = [ python3 ]; + + strictDeps = true; + + postPatch = '' + sed -e "s|gnuplot_cmd = .*|gnuplot_cmd = '${gnuplot}/bin/gnuplot'|" \ + -e "s|\<wc\>|${coreutils}/bin/wc|g" \ + -e "s|\<grep\>|${gnugrep}/bin/grep|g" \ + -i gitstats + ''; + + makeFlags = [ + "PREFIX=$(out)" + "VERSION=${version}" + ]; + + buildFlags = [ "man" ]; + + postInstall = '' + installManPage doc/gitstats.1 + ''; + + meta = with lib; { + homepage = "http://gitstats.sourceforge.net/"; + description = "Git history statistics generator"; + license = licenses.gpl2Plus; + platforms = platforms.all; + maintainers = with maintainers; [ bjornfor ]; + }; +} diff --git a/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix b/pkgs/applications/version-management/gitstatus/default.nix index 4b669c27252e2..4b669c27252e2 100644 --- a/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix +++ b/pkgs/applications/version-management/gitstatus/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix b/pkgs/applications/version-management/gitstatus/romkatv_libgit2.nix index 73d35b1bd9b2f..73d35b1bd9b2f 100644 --- a/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix +++ b/pkgs/applications/version-management/gitstatus/romkatv_libgit2.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitty/default.nix b/pkgs/applications/version-management/gitty/default.nix index 12a82143c35b4..12a82143c35b4 100644 --- a/pkgs/applications/version-management/git-and-tools/gitty/default.nix +++ b/pkgs/applications/version-management/gitty/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitui/default.nix b/pkgs/applications/version-management/gitui/default.nix index a161fb2c6b1b6..a161fb2c6b1b6 100644 --- a/pkgs/applications/version-management/git-and-tools/gitui/default.nix +++ b/pkgs/applications/version-management/gitui/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gitweb/default.nix b/pkgs/applications/version-management/gitweb/default.nix index 2c8d7eedc2d90..2c8d7eedc2d90 100644 --- a/pkgs/applications/version-management/git-and-tools/gitweb/default.nix +++ b/pkgs/applications/version-management/gitweb/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/glab/default.nix b/pkgs/applications/version-management/glab/default.nix index 9d6bbbd13f67c..9d6bbbd13f67c 100644 --- a/pkgs/applications/version-management/git-and-tools/glab/default.nix +++ b/pkgs/applications/version-management/glab/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/glitter/default.nix b/pkgs/applications/version-management/glitter/default.nix index e51791042b999..e51791042b999 100644 --- a/pkgs/applications/version-management/git-and-tools/glitter/default.nix +++ b/pkgs/applications/version-management/glitter/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/gst/default.nix b/pkgs/applications/version-management/gst/default.nix index f0f347d14ca46..f0f347d14ca46 100644 --- a/pkgs/applications/version-management/git-and-tools/gst/default.nix +++ b/pkgs/applications/version-management/gst/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/hub/default.nix b/pkgs/applications/version-management/hub/default.nix index cb75ec8264640..cb75ec8264640 100644 --- a/pkgs/applications/version-management/git-and-tools/hub/default.nix +++ b/pkgs/applications/version-management/hub/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/hut/default.nix b/pkgs/applications/version-management/hut/default.nix index f2623d326d0ac..f2623d326d0ac 100644 --- a/pkgs/applications/version-management/git-and-tools/hut/default.nix +++ b/pkgs/applications/version-management/hut/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/josh/default.nix b/pkgs/applications/version-management/josh/default.nix index acf2b24c0794e..acf2b24c0794e 100644 --- a/pkgs/applications/version-management/git-and-tools/josh/default.nix +++ b/pkgs/applications/version-management/josh/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/lab/default.nix b/pkgs/applications/version-management/lab/default.nix index 754fa778fed90..754fa778fed90 100644 --- a/pkgs/applications/version-management/git-and-tools/lab/default.nix +++ b/pkgs/applications/version-management/lab/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/lefthook/default.nix b/pkgs/applications/version-management/lefthook/default.nix index ac4b7762c2e44..ac4b7762c2e44 100644 --- a/pkgs/applications/version-management/git-and-tools/lefthook/default.nix +++ b/pkgs/applications/version-management/lefthook/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/legit/default.nix b/pkgs/applications/version-management/legit/default.nix index 33efad77f9089..33efad77f9089 100644 --- a/pkgs/applications/version-management/git-and-tools/legit/default.nix +++ b/pkgs/applications/version-management/legit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/lucky-commit/default.nix b/pkgs/applications/version-management/lucky-commit/default.nix index a484aa6c3290b..a484aa6c3290b 100644 --- a/pkgs/applications/version-management/git-and-tools/lucky-commit/default.nix +++ b/pkgs/applications/version-management/lucky-commit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/pass-git-helper/default.nix b/pkgs/applications/version-management/pass-git-helper/default.nix index 63f7a459a70a5..63f7a459a70a5 100644 --- a/pkgs/applications/version-management/git-and-tools/pass-git-helper/default.nix +++ b/pkgs/applications/version-management/pass-git-helper/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/qgit/default.nix b/pkgs/applications/version-management/qgit/default.nix index 85cb9127c21e2..85cb9127c21e2 100644 --- a/pkgs/applications/version-management/git-and-tools/qgit/default.nix +++ b/pkgs/applications/version-management/qgit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/radicle-cli/default.nix b/pkgs/applications/version-management/radicle-cli/default.nix index a8df056774a2a..a8df056774a2a 100644 --- a/pkgs/applications/version-management/git-and-tools/radicle-cli/default.nix +++ b/pkgs/applications/version-management/radicle-cli/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix b/pkgs/applications/version-management/radicle-upstream/default.nix index c88d0b9d38666..c88d0b9d38666 100644 --- a/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix +++ b/pkgs/applications/version-management/radicle-upstream/default.nix diff --git a/pkgs/applications/version-management/redmine/Gemfile b/pkgs/applications/version-management/redmine/Gemfile index 7e5cf752bc884..30bb8cc171a33 100644 --- a/pkgs/applications/version-management/redmine/Gemfile +++ b/pkgs/applications/version-management/redmine/Gemfile @@ -65,13 +65,14 @@ end group :test do gem "rails-dom-testing" - gem 'mocha', '>= 1.4.0' + gem 'mocha', (Gem.ruby_version < Gem::Version.new('2.7.0') ? ['>= 1.4.0', '< 2.0.0'] : '>= 1.4.0') gem 'simplecov', '~> 0.18.5', :require => false gem "ffi", platforms: [:mingw, :x64_mingw, :mswin] # For running system tests - gem 'puma' + # TODO: Remove version specification once Capybara supports Puma 6 + gem 'puma', '< 6.0.0' gem 'capybara', '~> 3.31.0' - gem "selenium-webdriver" + gem "selenium-webdriver", "~> 3.142.7" gem 'webdrivers', '~> 4.4', require: false # RuboCop gem 'rubocop', '~> 1.12.0' diff --git a/pkgs/applications/version-management/redmine/Gemfile.lock b/pkgs/applications/version-management/redmine/Gemfile.lock index c57844b49a28c..722205e17dbed 100644 --- a/pkgs/applications/version-management/redmine/Gemfile.lock +++ b/pkgs/applications/version-management/redmine/Gemfile.lock @@ -58,7 +58,7 @@ GEM rack-test (>= 0.6.3) regexp_parser (~> 1.5) xpath (~> 3.2) - childprocess (4.1.0) + childprocess (3.0.0) chunky_png (1.4.0) concurrent-ruby (1.1.10) crass (1.0.6) @@ -72,7 +72,7 @@ GEM htmlentities (4.3.4) i18n (1.8.11) concurrent-ruby (~> 1.0) - loofah (2.19.0) + loofah (2.19.1) crass (~> 1.0.2) nokogiri (>= 1.5.9) mail (2.7.1) @@ -83,21 +83,24 @@ GEM mini_mime (1.0.3) mini_portile2 (2.8.0) minitest (5.16.3) - mocha (1.15.0) + mocha (2.0.2) + ruby2_keywords (>= 0.0.5) mysql2 (0.5.4) net-ldap (0.17.1) nio4r (2.5.8) - nokogiri (1.13.8) + nokogiri (1.13.10) mini_portile2 (~> 2.8.0) racc (~> 1.4) + nokogiri (1.13.10-x86_64-linux) + racc (~> 1.4) parallel (1.22.1) - parser (3.1.2.1) + parser (3.1.3.0) ast (~> 2.4.1) pg (1.2.3) - public_suffix (5.0.0) + public_suffix (5.0.1) puma (5.6.5) nio4r (~> 2.0) - racc (1.6.0) + racc (1.6.1) rack (2.2.4) rack-openid (1.4.2) rack (>= 1.1.0) @@ -120,8 +123,8 @@ GEM rails-dom-testing (2.0.3) activesupport (>= 4.2.0) nokogiri (>= 1.6) - rails-html-sanitizer (1.4.3) - loofah (~> 2.3) + rails-html-sanitizer (1.4.4) + loofah (~> 2.19, >= 2.19.1) railties (5.2.8.1) actionpack (= 5.2.8.1) activesupport (= 5.2.8.1) @@ -145,7 +148,7 @@ GEM roadie-rails (2.2.0) railties (>= 5.1, < 6.2) roadie (>= 3.1, < 5.0) - rotp (6.2.0) + rotp (6.2.2) rouge (3.26.1) rqrcode (2.1.2) chunky_png (~> 1.0) @@ -160,7 +163,7 @@ GEM rubocop-ast (>= 1.2.0, < 2.0) ruby-progressbar (~> 1.7) unicode-display_width (>= 1.4.0, < 3.0) - rubocop-ast (1.21.0) + rubocop-ast (1.24.0) parser (>= 3.1.1.0) rubocop-performance (1.10.2) rubocop (>= 0.90.0, < 2.0) @@ -171,12 +174,11 @@ GEM rubocop (>= 0.90.0, < 2.0) ruby-openid (2.9.2) ruby-progressbar (1.11.0) + ruby2_keywords (0.0.5) rubyzip (2.3.2) - selenium-webdriver (4.5.0) - childprocess (>= 0.5, < 5.0) - rexml (~> 3.2, >= 3.2.5) - rubyzip (>= 1.2.2, < 3.0) - websocket (~> 1.0) + selenium-webdriver (3.142.7) + childprocess (>= 0.5, < 4.0) + rubyzip (>= 1.2.2) simplecov (0.18.5) docile (~> 1.1) simplecov-html (~> 0.11) @@ -198,7 +200,6 @@ GEM rubyzip (>= 1.3.0) selenium-webdriver (> 3.141, < 5.0) webrick (1.7.0) - websocket (1.2.9) websocket-driver (0.7.5) websocket-extensions (>= 0.1.0) websocket-extensions (0.1.5) @@ -227,7 +228,7 @@ DEPENDENCIES net-ldap (~> 0.17.0) nokogiri (~> 1.13.6) pg (~> 1.2.2) - puma + puma (< 6.0.0) rack-openid rails (= 5.2.8.1) rails-dom-testing @@ -243,7 +244,7 @@ DEPENDENCIES rubocop-rails (~> 2.9.0) ruby-openid (~> 2.9.2) rubyzip (~> 2.3.0) - selenium-webdriver + selenium-webdriver (~> 3.142.7) simplecov (~> 0.18.5) tzinfo-data webdrivers (~> 4.4) @@ -253,4 +254,4 @@ RUBY VERSION ruby 2.7.6p219 BUNDLED WITH - 2.3.9 + 2.3.26 diff --git a/pkgs/applications/version-management/redmine/default.nix b/pkgs/applications/version-management/redmine/default.nix index 9da39ba4b1c93..d71b570b7dfe1 100644 --- a/pkgs/applications/version-management/redmine/default.nix +++ b/pkgs/applications/version-management/redmine/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchurl, bundlerEnv, ruby, makeWrapper, nixosTests }: let - version = "4.2.8"; + version = "4.2.9"; rubyEnv = bundlerEnv { name = "redmine-env-${version}"; @@ -16,7 +16,7 @@ in src = fetchurl { url = "https://www.redmine.org/releases/${pname}-${version}.tar.gz"; - sha256 = "sha256-C0McBS2P02uTIB2vrzYVzbjQNGDvzyQA59MmYrKrYnI="; + sha256 = "sha256-04dBNF9u/RDAeYmAk7JZ2NxNzY5B38T2RkloWueoyx4="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/version-management/redmine/gemset.nix b/pkgs/applications/version-management/redmine/gemset.nix index 5248ff369830d..fa34afaa4d600 100644 --- a/pkgs/applications/version-management/redmine/gemset.nix +++ b/pkgs/applications/version-management/redmine/gemset.nix @@ -166,10 +166,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1lvcp8bsd35g57f7wz4jigcw2sryzzwrpcgjwwf3chmjrjcww5in"; + sha256 = "1ic028k8xgm2dds9mqnvwwx3ibaz32j8455zxr9f4bcnviyahya5"; type = "gem"; }; - version = "4.1.0"; + version = "3.0.0"; }; chunky_png = { groups = ["default"]; @@ -280,10 +280,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1fpyk1965py77al7iadkn5dibwgvybknkr7r8bii2dj73wvr29rh"; + sha256 = "08qhzck271anrx9y6qa6mh8hwwdzsgwld8q0000rcd7yvvpnjr3c"; type = "gem"; }; - version = "2.19.0"; + version = "2.19.1"; }; mail = { dependencies = ["mini_mime"]; @@ -357,14 +357,15 @@ version = "5.16.3"; }; mocha = { + dependencies = ["ruby2_keywords"]; groups = ["test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0z2nzk106b6af6n0d9xqf2sphaff4gpjgxvwqcmvy6k719hqhkh9"; + sha256 = "03bgnshh84hrw6f1sdj5srxnz0z50m0a7i93fa28fkbm52c2a1lg"; type = "gem"; }; - version = "1.15.0"; + version = "2.0.2"; }; mysql2 = { groups = ["default"]; @@ -410,10 +411,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g7axlq2y6gzmixzzzhw3fn6nhrhg469jj8gfr7gs8igiclpkhkr"; + sha256 = "0n79k78c5vdcyl0m3y3l5x9kxl6xf5lgriwi2vd665qmdkr01vnk"; type = "gem"; }; - version = "1.13.8"; + version = "1.13.10"; }; parallel = { groups = ["default" "test"]; @@ -431,10 +432,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1q31n7yj59wka8xl8s5wkf66hm4pgvblx95czyxffprdnlhrir2p"; + sha256 = "17qfhjvnr9q2gp1gfdl6kndy2mb6qdwsls3vnjhb1h8ddimdm4s5"; type = "gem"; }; - version = "3.1.2.1"; + version = "3.1.3.0"; }; pg = { groups = ["default"]; @@ -459,10 +460,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0sqw1zls6227bgq38sxb2hs8nkdz4hn1zivs27mjbniswfy4zvi6"; + sha256 = "0hz0bx2qs2pwb0bwazzsah03ilpf3aai8b7lk7s35jsfzwbkjq35"; type = "gem"; }; - version = "5.0.0"; + version = "5.0.1"; }; puma = { dependencies = ["nio4r"]; @@ -480,10 +481,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; + sha256 = "0p685i23lr8pl7l09g9l2mcj615fr7g33w3mkcr472lcg34nq8n8"; type = "gem"; }; - version = "1.6.0"; + version = "1.6.1"; }; rack = { groups = ["default" "openid" "test"]; @@ -545,10 +546,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1mj0b7ay10a2fgwj70kjw7mlyrp7a5la8lx8zmwhy40bkansdfrf"; + sha256 = "1mcb75qvldfz6zsr4inrfx7dmb0ngxy507awx28khqmnla3hqpc9"; type = "gem"; }; - version = "1.4.3"; + version = "1.4.4"; }; railties = { dependencies = ["actionpack" "activesupport" "method_source" "rake" "thor"]; @@ -670,10 +671,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "11q7rkjx40yi6lpylgl2jkpy162mjw7mswrcgcax86vgpbpjx6i3"; + sha256 = "10mmzc85y7andsich586ndykw678qn1ns2wpjxrg0sc0gr4w3pig"; type = "gem"; }; - version = "6.2.0"; + version = "6.2.2"; }; rouge = { groups = ["default"]; @@ -723,10 +724,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0s4m9h9hzrpfmsnswvfimafmjwfa79cbqh9dvq18cja32dhrhpcg"; + sha256 = "0sqkg84npyq9z4d3z46w59zyr1r1rbd1mrrlglws9ksw04wdq5x9"; type = "gem"; }; - version = "1.21.0"; + version = "1.24.0"; }; rubocop-performance = { dependencies = ["rubocop" "rubocop-ast"]; @@ -770,6 +771,16 @@ }; version = "1.11.0"; }; + ruby2_keywords = { + groups = ["default" "test"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1vz322p8n39hz3b4a9gkmz9y7a5jaz41zrm2ywf31dvkqm03glgz"; + type = "gem"; + }; + version = "0.0.5"; + }; rubyzip = { groups = ["default" "test"]; platforms = []; @@ -781,15 +792,15 @@ version = "2.3.2"; }; selenium-webdriver = { - dependencies = ["childprocess" "rexml" "rubyzip" "websocket"]; + dependencies = ["childprocess" "rubyzip"]; groups = ["test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0fp7h5bnlqp649imgpnshgf3mxl8zwnpsl1ak1giii81r0cd6in3"; + sha256 = "0adcvp86dinaqq3nhf8p3m0rl2g6q0a4h52k0i7kdnsg1qz9k86y"; type = "gem"; }; - version = "4.5.0"; + version = "3.142.7"; }; simplecov = { dependencies = ["docile" "simplecov-html"]; @@ -896,16 +907,6 @@ }; version = "1.7.0"; }; - websocket = { - groups = ["default" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0dib6p55sl606qb4vpwrvj5wh881kk4aqn2zpfapf8ckx7g14jw8"; - type = "gem"; - }; - version = "1.2.9"; - }; websocket-driver = { dependencies = ["websocket-extensions"]; groups = ["default"]; diff --git a/pkgs/applications/version-management/git-and-tools/rs-git-fsmonitor/default.nix b/pkgs/applications/version-management/rs-git-fsmonitor/default.nix index e885b7c060782..e885b7c060782 100644 --- a/pkgs/applications/version-management/git-and-tools/rs-git-fsmonitor/default.nix +++ b/pkgs/applications/version-management/rs-git-fsmonitor/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/scmpuff/default.nix b/pkgs/applications/version-management/scmpuff/default.nix index 65ca1b476d4d6..65ca1b476d4d6 100644 --- a/pkgs/applications/version-management/git-and-tools/scmpuff/default.nix +++ b/pkgs/applications/version-management/scmpuff/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/stgit/default.nix b/pkgs/applications/version-management/stgit/default.nix index b5bdecd85ad16..b5bdecd85ad16 100644 --- a/pkgs/applications/version-management/git-and-tools/stgit/default.nix +++ b/pkgs/applications/version-management/stgit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/subgit/default.nix b/pkgs/applications/version-management/subgit/default.nix index 0ec06aeaaa685..0ec06aeaaa685 100644 --- a/pkgs/applications/version-management/git-and-tools/subgit/default.nix +++ b/pkgs/applications/version-management/subgit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/svn-all-fast-export/default.nix b/pkgs/applications/version-management/svn-all-fast-export/default.nix index a40e959a50a41..a40e959a50a41 100644 --- a/pkgs/applications/version-management/git-and-tools/svn-all-fast-export/default.nix +++ b/pkgs/applications/version-management/svn-all-fast-export/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/svn2git/default.nix b/pkgs/applications/version-management/svn2git/default.nix index 562658a6e99fe..562658a6e99fe 100644 --- a/pkgs/applications/version-management/git-and-tools/svn2git/default.nix +++ b/pkgs/applications/version-management/svn2git/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/thicket/default.nix b/pkgs/applications/version-management/thicket/default.nix index 1f331ffd49623..1f331ffd49623 100644 --- a/pkgs/applications/version-management/git-and-tools/thicket/default.nix +++ b/pkgs/applications/version-management/thicket/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/tig/default.nix b/pkgs/applications/version-management/tig/default.nix index cfce8a35f9e12..cfce8a35f9e12 100644 --- a/pkgs/applications/version-management/git-and-tools/tig/default.nix +++ b/pkgs/applications/version-management/tig/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/topgit/default.nix b/pkgs/applications/version-management/topgit/default.nix index 86e0d1b3c8099..86e0d1b3c8099 100644 --- a/pkgs/applications/version-management/git-and-tools/topgit/default.nix +++ b/pkgs/applications/version-management/topgit/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/transcrypt/default.nix b/pkgs/applications/version-management/transcrypt/default.nix index 3225744abc57c..3225744abc57c 100644 --- a/pkgs/applications/version-management/git-and-tools/transcrypt/default.nix +++ b/pkgs/applications/version-management/transcrypt/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/transcrypt/helper-scripts_depspathprefix.patch b/pkgs/applications/version-management/transcrypt/helper-scripts_depspathprefix.patch index 925aadab3dd59..925aadab3dd59 100644 --- a/pkgs/applications/version-management/git-and-tools/transcrypt/helper-scripts_depspathprefix.patch +++ b/pkgs/applications/version-management/transcrypt/helper-scripts_depspathprefix.patch diff --git a/pkgs/applications/video/jftui/default.nix b/pkgs/applications/video/jftui/default.nix index ec98a811e0782..78d70d594a19f 100644 --- a/pkgs/applications/video/jftui/default.nix +++ b/pkgs/applications/video/jftui/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "jftui"; - version = "0.6.0"; + version = "0.6.1"; src = fetchFromGitHub { owner = "Aanok"; repo = pname; rev = "v${version}"; - sha256 = "sha256-UwR4IboLSjD/XXvSw1AhJubSxettvL/URhZ/Je6TWPQ="; + sha256 = "sha256-TkSnNZBnmDSMsxTFQx1OcFDLQBUqxIrFXQeeslXKqA0="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix b/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix new file mode 100644 index 0000000000000..2955dfb7c0c87 --- /dev/null +++ b/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix @@ -0,0 +1,31 @@ +{ lib, stdenv, fetchFromGitHub, pkg-config, dbus, mpv-unwrapped }: + +stdenv.mkDerivation rec { + pname = "mpv-inhibit-gnome"; + version = "0.1.3"; + + src = fetchFromGitHub { + owner = "Guldoman"; + repo = "mpv_inhibit_gnome"; + rev = "v${version}"; + hash = "sha256-LSGg5gAQE2JpepBqhz6D6d3NlqYaU4bjvYf1F+oLphQ="; + }; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ dbus mpv-unwrapped ]; + + passthru.scriptName = "mpv_inhibit_gnome.so"; + + installPhase = '' + install -D ./lib/mpv_inhibit_gnome.so $out/share/mpv/scripts/mpv_inhibit_gnome.so + ''; + + meta = with lib; { + description = "This mpv plugin prevents screen blanking in GNOME"; + homepage = "https://github.com/Guldoman/mpv_inhibit_gnome"; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ myaats ]; + }; +} diff --git a/pkgs/applications/video/vdr/default.nix b/pkgs/applications/video/vdr/default.nix index 68750ac918cba..352b35cc1e9c9 100644 --- a/pkgs/applications/video/vdr/default.nix +++ b/pkgs/applications/video/vdr/default.nix @@ -5,12 +5,12 @@ }: stdenv.mkDerivation rec { pname = "vdr"; - version = "2.6.1"; + version = "2.6.3"; src = fetchgit { url = "git://git.tvdr.de/vdr.git"; rev = version; - sha256 = "sha256-jKuvh1OruPXTBlgLwlwcJdqC8u0WBDr/Un5JUL3U0hw="; + sha256 = "sha256-SDaNk8tDaO70+V7sozMGTCzpnOqa52xdEQPURkyuTt8="; }; enableParallelBuilding = true; diff --git a/pkgs/applications/virtualization/colima/default.nix b/pkgs/applications/virtualization/colima/default.nix index d19a764e4eb1d..7794cd81de2c1 100644 --- a/pkgs/applications/virtualization/colima/default.nix +++ b/pkgs/applications/virtualization/colima/default.nix @@ -11,13 +11,13 @@ buildGoModule rec { pname = "colima"; - version = "0.4.6"; + version = "0.5.0"; src = fetchFromGitHub { owner = "abiosoft"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mVEp/4iL23rrw6HSl/7qMGK4YCJ6I+9gcSIhyPsAWzc="; + sha256 = "sha256-Ey/h9W1WFMJdO5U9IeHhVTYDEJi8w18h2PY0lB0S/BU="; # We need the git revision leaveDotGit = true; postFetch = '' @@ -28,7 +28,7 @@ buildGoModule rec { nativeBuildInputs = [ installShellFiles makeWrapper ]; - vendorSha256 = "sha256-tsMQMWEkTE1NhevcqBETGWiboqL6QTepgnIo4B5Y4wQ="; + vendorSha256 = "sha256-v0U7TorUwOtBzBQ/OQQSAX6faDI1IX/IDIJnY8UFsu8="; CGO_ENABLED = 1; diff --git a/pkgs/applications/virtualization/docker/compose.nix b/pkgs/applications/virtualization/docker/compose.nix index e3a9ddbbf102b..467a235dc8849 100644 --- a/pkgs/applications/virtualization/docker/compose.nix +++ b/pkgs/applications/virtualization/docker/compose.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "docker-compose"; - version = "2.14.1"; + version = "2.14.2"; src = fetchFromGitHub { owner = "docker"; repo = "compose"; rev = "v${version}"; - sha256 = "sha256-FxioqEPVHI6PlKfcQlKbPVj6LGyUsXabCpJh+zY3gco="; + sha256 = "sha256-Yr4R2w6tUsir57etZeex2jT1PW3EZvsLJkVAo/QkhUA="; }; postPatch = '' @@ -16,7 +16,7 @@ buildGoModule rec { rm -rf e2e/ ''; - vendorSha256 = "sha256-sWEtpwtr2/2qNWyHZdiZRYdw/LTwmIQKM9nCaHxL7ns="; + vendorSha256 = "sha256-ar61gvbcm7bcgoPodppqrVJnyFHdZkPIMQ6IUXNpGBA="; ldflags = [ "-X github.com/docker/compose/v2/internal.Version=${version}" "-s" "-w" ]; diff --git a/pkgs/applications/virtualization/dumb-init/default.nix b/pkgs/applications/virtualization/dumb-init/default.nix index bb265dc5488ac..fa408cb910bc5 100644 --- a/pkgs/applications/virtualization/dumb-init/default.nix +++ b/pkgs/applications/virtualization/dumb-init/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-aRh0xfmp+ToXIYjYaducTpZUHndZ5HlFZpFhzJ3yKgs="; }; - buildInputs = [ glibc.static ]; + buildInputs = lib.optionals (!stdenv.hostPlatform.isMusl) [ glibc.static ]; installPhase = '' runHook preInstall diff --git a/pkgs/applications/virtualization/pods/default.nix b/pkgs/applications/virtualization/pods/default.nix index 776374ef6d98c..516fba43f4b33 100644 --- a/pkgs/applications/virtualization/pods/default.nix +++ b/pkgs/applications/virtualization/pods/default.nix @@ -17,19 +17,19 @@ stdenv.mkDerivation rec { pname = "pods"; - version = "1.0.0-rc.2"; + version = "1.0.0-rc.3"; src = fetchFromGitHub { owner = "marhkb"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fyhp0Qumku2EO+5+AaWBLp6xG9mpfNuxhr/PoLca1a4="; + sha256 = "sha256-4dRwrB2M0GooRq3Hi2nmpbQm9RaLqrkZkEDTQpEd7bo="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "sha256-v6ZGDd1mAxb55JIijJHlthrTta2PwZMRa8MqVnJMyzQ="; + sha256 = "sha256-wGO2qp8jKHEevQ5vMDxqMzvRr1QazclhZ98M3B29PqQ="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/window-managers/i3/lock-color.nix b/pkgs/applications/window-managers/i3/lock-color.nix index 7f08891385b1e..4460c5f90b76b 100644 --- a/pkgs/applications/window-managers/i3/lock-color.nix +++ b/pkgs/applications/window-managers/i3/lock-color.nix @@ -25,6 +25,7 @@ stdenv.mkDerivation rec { installFlags = [ "PREFIX=\${out}" "SYSCONFDIR=\${out}/etc" "MANDIR=\${out}/share/man" ]; postInstall = '' mv $out/bin/i3lock $out/bin/i3lock-color + ln -s $out/bin/i3lock-color $out/bin/i3lock mv $out/share/man/man1/i3lock.1 $out/share/man/man1/i3lock-color.1 sed -i 's/\(^\|\s\|"\)i3lock\(\s\|$\)/\1i3lock-color\2/g' $out/share/man/man1/i3lock-color.1 ''; diff --git a/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix b/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix index 8884b1d5100ce..29bd81fe872c9 100644 --- a/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix +++ b/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { installPhase = '' install -D i3lock-fancy-rapid $out/bin/i3lock-fancy-rapid + ln -s $out/bin/i3lock-fancy-rapid $out/bin/i3lock ''; meta = with lib; { diff --git a/pkgs/applications/window-managers/i3/lock-fancy.nix b/pkgs/applications/window-managers/i3/lock-fancy.nix index 9a1b959690a2c..f3963b43b54af 100644 --- a/pkgs/applications/window-managers/i3/lock-fancy.nix +++ b/pkgs/applications/window-managers/i3/lock-fancy.nix @@ -41,6 +41,7 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin $out/share/i3lock-fancy/icons cp i3lock-fancy $out/bin/i3lock-fancy + ln -s $out/bin/i3lock-fancy $out/bin/i3lock cp icons/lock*.png $out/share/i3lock-fancy/icons ''; diff --git a/pkgs/applications/window-managers/icewm/default.nix b/pkgs/applications/window-managers/icewm/default.nix index fe0c275b72e2f..ad2ed5bf34617 100644 --- a/pkgs/applications/window-managers/icewm/default.nix +++ b/pkgs/applications/window-managers/icewm/default.nix @@ -41,13 +41,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "icewm"; - version = "3.2.3"; + version = "3.3.0"; src = fetchFromGitHub { owner = "ice-wm"; repo = "icewm"; rev = finalAttrs.version; - hash = "sha256-cG+I7WMWboMNH6A0eKFI3evN16C5EGE127q+a/PBR5E="; + hash = "sha256-Zl7ob0JcFN8sl8Zuf2aB7l7q3W8GmvVBoI1W3aLLXfU="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/window-managers/maui-shell/default.nix b/pkgs/applications/window-managers/maui-shell/default.nix new file mode 100644 index 0000000000000..e1abf6676b50e --- /dev/null +++ b/pkgs/applications/window-managers/maui-shell/default.nix @@ -0,0 +1,87 @@ +{ lib +, pkgs +, mkDerivation +, fetchFromGitHub +, qtquickcontrols2 +, cmake +, extra-cmake-modules +, kio +, krunner +, prison +, knotifyconfig +, kidletime +, kpeople +, kdesu +, kactivities-stats +, ktexteditor +, kinit +, kunitconversion +, kitemmodels +, phonon +, polkit-qt +, polkit +, mauikit +, mauikit-filebrowsing +, bluedevil +, plasma-nm +, plasma-pa +, bluez-qt +, maui-core +, cask-server +, mauiman +, mauikit-calendar +, qtmultimedia +}: + +mkDerivation rec { + pname = "maui-shell"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "Nitrux"; + repo = pname; + rev = "refs/tags/v${version}"; + sha256 = "sha256-lhTtIHE+FUgZFaPYoIRgLPrBUPISeXHCg3rn0FlQg7w="; + }; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + bluedevil + bluez-qt + cask-server + kactivities-stats + kdesu + kidletime + kinit + kitemmodels + knotifyconfig + krunner + kunitconversion + kpeople + ktexteditor + mauikit + mauikit-calendar + mauikit-filebrowsing + mauiman + maui-core + phonon + plasma-nm + plasma-pa + polkit + polkit-qt + prison + qtmultimedia + qtquickcontrols2 + ]; + + meta = with lib; { + description = "A convergent shell for desktops, tablets, and phones"; + homepage = "https://github.com/Nitrux/maui-shell"; + license = licenses.lgpl3; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/pkgs/build-support/docker/default.nix b/pkgs/build-support/docker/default.nix index 3d51c03f97af2..bdc93f3643f10 100644 --- a/pkgs/build-support/docker/default.nix +++ b/pkgs/build-support/docker/default.nix @@ -486,7 +486,7 @@ rec { inherit (stream) imageName; passthru = { inherit (stream) imageTag; }; nativeBuildInputs = [ pigz ]; - } "${stream} | pigz -nT > $out"; + } "${stream} | pigz -nTR > $out"; # 1. extract the base image # 2. create the layer @@ -735,7 +735,7 @@ rec { chmod -R a-w image echo "Cooking the image..." - tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nT > $out + tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nTR > $out echo "Finished." ''; @@ -775,7 +775,7 @@ rec { mv repositories image/repositories mv manifest.json image/manifest.json # Create tarball and gzip - tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nT > $out + tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nTR > $out ''; @@ -1220,5 +1220,5 @@ rec { inherit (stream) imageName; passthru = { inherit (stream) imageTag; }; nativeBuildInputs = [ pigz ]; - } "${stream} | pigz -nT > $out"; + } "${stream} | pigz -nTR > $out"; } diff --git a/pkgs/build-support/dotnet/build-dotnet-module/default.nix b/pkgs/build-support/dotnet/build-dotnet-module/default.nix index 89d423c80d72a..7f05a3a4eecc6 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/default.nix +++ b/pkgs/build-support/dotnet/build-dotnet-module/default.nix @@ -2,13 +2,11 @@ , stdenvNoCC , callPackage , writeShellScript -, writeText , srcOnly , linkFarmFromDrvs , symlinkJoin , makeWrapper , dotnetCorePackages -, dotnetPackages , mkNugetSource , mkNugetDeps , nuget-to-nix @@ -61,6 +59,9 @@ # Libraries that need to be available at runtime should be passed through this. # These get wrapped into `LD_LIBRARY_PATH`. , runtimeDeps ? [ ] + # The dotnet runtime ID. If null, fetch-deps will gather dependencies for all + # platforms in meta.platforms which are supported by the sdk. +, runtimeId ? null # Tests to disable. This gets passed to `dotnet test --filter "FullyQualifiedName!={}"`, to ensure compatibility with all frameworks. # See https://docs.microsoft.com/en-us/dotnet/core/tools/dotnet-test#filter-option-details for more details. @@ -73,6 +74,8 @@ , buildType ? "Release" # If set to true, builds the application as a self-contained - removing the runtime dependency on dotnet , selfContainedBuild ? false + # Whether to explicitly enable UseAppHost when building +, useAppHost ? true # The dotnet SDK to use. , dotnet-sdk ? dotnetCorePackages.sdk_6_0 # The dotnet runtime to use. @@ -90,6 +93,10 @@ let inherit (callPackage ./hooks { inherit dotnet-sdk dotnet-test-sdk disabledTests nuget-source dotnet-runtime runtimeDeps buildType; + runtimeId = + if runtimeId != null + then runtimeId + else dotnetCorePackages.systemToDotnetRid stdenvNoCC.targetPlatform.system; }) dotnetConfigureHook dotnetBuildHook dotnetCheckHook dotnetInstallHook dotnetFixupHook; localDeps = @@ -114,10 +121,7 @@ let # this contains all the nuget packages that are implicitly referenced by the dotnet # build system. having them as separate deps allows us to avoid having to regenerate # a packages dependencies when the dotnet-sdk version changes - sdkDeps = mkNugetDeps { - name = "dotnet-sdk-${dotnet-sdk.version}-deps"; - nugetDeps = dotnet-sdk.passthru.packages; - }; + sdkDeps = dotnet-sdk.packages; sdkSource = mkNugetSource { name = "dotnet-sdk-${dotnet-sdk.version}-source"; @@ -152,22 +156,18 @@ stdenvNoCC.mkDerivation (args // { # gappsWrapperArgs gets included when wrapping for dotnet, as to avoid double wrapping dontWrapGApps = args.dontWrapGApps or true; + inherit selfContainedBuild useAppHost; + passthru = { inherit nuget-source; fetch-deps = let - # Derivations may set flags such as `--runtime <rid>` based on the host platform to avoid restoring/building nuget dependencies they dont have or dont need. - # This introduces an issue; In this script we loop over all platforms from `meta` and add the RID flag for it, as to fetch all required dependencies. - # The script would inherit the RID flag from the derivation based on the platform building the script, and set the flag for any iteration we do over the RIDs. - # That causes conflicts. To circumvent it we remove all occurances of the flag. - flags = - let - hasRid = flag: lib.any (v: v) (map (rid: lib.hasInfix rid flag) (lib.attrValues dotnet-sdk.runtimeIdentifierMap)); - in - builtins.filter (flag: !(hasRid flag)) (dotnetFlags ++ dotnetRestoreFlags); - - runtimeIds = map (system: dotnet-sdk.systemToDotnetRid system) platforms; + flags = dotnetFlags ++ dotnetRestoreFlags; + runtimeIds = + if runtimeId != null + then [ runtimeId ] + else map (system: dotnetCorePackages.systemToDotnetRid system) platforms; in writeShellScript "fetch-${pname}-deps" '' set -euo pipefail diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix b/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix index 1cc88602ff4c2..2309ae6240d24 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix @@ -9,7 +9,9 @@ , dotnet-runtime , runtimeDeps , buildType +, runtimeId }: +assert (builtins.isString runtimeId); let libraryPath = lib.makeLibraryPath runtimeDeps; @@ -21,6 +23,7 @@ in deps = [ dotnet-sdk nuget-source ]; substitutions = { nugetSource = nuget-source; + inherit runtimeId; }; } ./dotnet-configure-hook.sh) { }; @@ -29,7 +32,7 @@ in name = "dotnet-build-hook"; deps = [ dotnet-sdk ]; substitutions = { - inherit buildType; + inherit buildType runtimeId; }; } ./dotnet-build-hook.sh) { }; @@ -49,7 +52,7 @@ in name = "dotnet-install-hook"; deps = [ dotnet-sdk ]; substitutions = { - inherit buildType; + inherit buildType runtimeId; }; } ./dotnet-install-hook.sh) { }; diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh index 9199b8d02a817..8f7f773393571 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh @@ -15,11 +15,15 @@ dotnetBuildHook() { fi if [ "${selfContainedBuild-}" ]; then - dotnetBuildFlags+=("-p:SelfContained=true") + dotnetBuildFlags+=(--runtime "@runtimeId@" "-p:SelfContained=true") else dotnetBuildFlags+=("-p:SelfContained=false") fi + if [ "${useAppHost-}" ]; then + dotnetBuildFlags+=("-p:UseAppHost=true") + fi + if [ "${version-}" ]; then local -r versionFlag="-p:Version=${version-}" fi @@ -31,7 +35,6 @@ dotnetBuildHook() { -p:BuildInParallel=$parallelBuildFlag \ -p:ContinuousIntegrationBuild=true \ -p:Deterministic=true \ - -p:UseAppHost=true \ --configuration "@buildType@" \ --no-restore \ ${versionFlag-} \ diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh index 0c0e5d310eabc..fcb77c063bfce 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh @@ -16,7 +16,7 @@ dotnetCheckHook() { local -r maxCpuFlag="1" fi - for project in ${testProjectFile[@]-}; do + for project in ${testProjectFile[@]-${projectFile[@]}}; do env "LD_LIBRARY_PATH=@libraryPath@" \ dotnet test "$project" \ -maxcpucount:$maxCpuFlag \ diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh index 3479f58bb38c5..1e33ebbaef714 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh @@ -18,6 +18,7 @@ dotnetConfigureHook() { env dotnet restore ${project-} \ -p:ContinuousIntegrationBuild=true \ -p:Deterministic=true \ + --runtime "@runtimeId@" \ --source "@nugetSource@/lib" \ ${parallelFlag-} \ ${dotnetRestoreFlags[@]} \ diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh index 217e79e41b46e..831059f941ca5 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh @@ -7,17 +7,20 @@ dotnetInstallHook() { runHook preInstall if [ "${selfContainedBuild-}" ]; then - dotnetInstallFlags+=("--self-contained") + dotnetInstallFlags+=(--runtime "@runtimeId@" "--self-contained") else dotnetInstallFlags+=("--no-self-contained") fi + if [ "${useAppHost-}" ]; then + dotnetInstallFlags+=("-p:UseAppHost=true") + fi + dotnetPublish() { local -r project="${1-}" env dotnet publish ${project-} \ -p:ContinuousIntegrationBuild=true \ -p:Deterministic=true \ - -p:UseAppHost=true \ --output "$out/lib/${pname}" \ --configuration "@buildType@" \ --no-build \ diff --git a/pkgs/build-support/make-hardcode-gsettings-patch/default.nix b/pkgs/build-support/make-hardcode-gsettings-patch/default.nix new file mode 100644 index 0000000000000..a1d2de21c4cb3 --- /dev/null +++ b/pkgs/build-support/make-hardcode-gsettings-patch/default.nix @@ -0,0 +1,60 @@ +{ + runCommand, + git, + coccinelle, + python3, +}: + +/* + Can be used as part of an update script to automatically create a patch + hardcoding the path of all GSettings schemas in C code. + For example: + passthru = { + hardcodeGsettingsPatch = makeHardcodeGsettingsPatch { + inherit src; + schemaIdToVariableMapping = { + ... + }; + }; + + updateScript = + let + updateSource = ...; + updatePatch = _experimental-update-script-combinators.copyAttrOutputToFile "evolution-ews.hardcodeGsettingsPatch" ./hardcode-gsettings.patch; + in + _experimental-update-script-combinators.sequence [ + updateSource + updatePatch + ]; + }; + } + takes as input a mapping from schema path to variable name. + For example `{ "org.gnome.evolution" = "EVOLUTION_SCHEMA_PATH"; }` + hardcodes looking for `org.gnome.evolution` into `@EVOLUTION_SCHEMA_PATH@`. + All schemas must be listed. +*/ +{ + src, + schemaIdToVariableMapping, +}: + +runCommand + "hardcode-gsettings.patch" + { + inherit src; + nativeBuildInputs = [ + git + coccinelle + python3 # For patch script + ]; + } + '' + unpackPhase + cd "''${sourceRoot:-.}" + set -x + cp ${builtins.toFile "glib-schema-to-var.json" (builtins.toJSON schemaIdToVariableMapping)} ./glib-schema-to-var.json + git init + git add -A + spatch --sp-file "${./hardcode-gsettings.cocci}" --dir . --in-place + git diff > "$out" + '' diff --git a/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci b/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci new file mode 100644 index 0000000000000..a265f5fac384e --- /dev/null +++ b/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci @@ -0,0 +1,142 @@ +/** + * Since Nix does not have a standard location like /usr/share, + * where GSettings system could look for schemas, we need to point the software to a correct location somehow. + * For executables, we handle this using wrappers but this is not an option for libraries like e-d-s. + * Instead, we hardcode the schema path when creating the settings. + * A schema path (ie org.gnome.evolution) can be replaced by @EVOLUTION_SCHEMA_ID@ + * which is then replaced at build time by substituteAll. + * The mapping is provided in a json file ./glib-schema-to-var.json + */ + +@initialize:python@ +@@ +import json + +cpp_constants = {} + +def register_cpp_constant(const_name, val): + cpp_constants[const_name] = val.strip() + +def resolve_cpp_constant(const_name): + return cpp_constants.get(const_name, const_name) + +with open("./glib-schema-to-var.json") as mapping_file: + schema_to_var = json.load(mapping_file); + +def get_schema_directory(schema_id): + # Sometimes the schema id is referenced using C preprocessor #define constant in the same file + # let’s try to resolve it first. + schema_id = resolve_cpp_constant(schema_id.strip()).strip('"') + if schema_id in schema_to_var: + return f'"@{schema_to_var[schema_id]}@"' + raise Exception(f"Unknown schema path {schema_id!r}, please add it to ./glib-schema-to-var.json") + +@find_cpp_constants@ +identifier const_name; +expression val; +@@ + +#define const_name val + +@script:python record_cpp_constants depends on find_cpp_constants@ +const_name << find_cpp_constants.const_name; +val << find_cpp_constants.val; +@@ + +register_cpp_constant(const_name, val) + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new(SCHEMA_ID); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, NULL, NULL); ++} + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +expression BACKEND; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new_with_backend(SCHEMA_ID, BACKEND); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, BACKEND, NULL); ++} + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +expression BACKEND; +expression PATH; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new_with_backend_and_path(SCHEMA_ID, BACKEND, PATH); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, BACKEND, PATH); ++} + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +expression PATH; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new_with_path(SCHEMA_ID, PATH); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, NULL, PATH); ++} diff --git a/pkgs/build-support/node/build-npm-package/hooks/default.nix b/pkgs/build-support/node/build-npm-package/hooks/default.nix index ff0930426d4e9..65ac661cea516 100644 --- a/pkgs/build-support/node/build-npm-package/hooks/default.nix +++ b/pkgs/build-support/node/build-npm-package/hooks/default.nix @@ -26,7 +26,7 @@ npmInstallHook = makeSetupHook { name = "npm-install-hook"; - deps = [ makeWrapper ]; + deps = [ buildPackages.makeWrapper ]; substitutions = { hostNode = "${nodejs}/bin/node"; jq = "${buildPackages.jq}/bin/jq"; diff --git a/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh b/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh index 7f601512c7e7b..b712e3a0543a2 100644 --- a/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh +++ b/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh @@ -20,7 +20,7 @@ npmBuildHook() { echo echo "Here are a few things you can try, depending on the error:" echo "1. Make sure your build script ($npmBuildScript) exists" - echo " If there is none, set `dontNpmBuild = true`." + echo ' If there is none, set `dontNpmBuild = true`.' echo '2. If the error being thrown is something similar to "error:0308010C:digital envelope routines::unsupported", add `NODE_OPTIONS = "--openssl-legacy-provider"` to your derivation' echo " See https://github.com/webpack/webpack/issues/14532 for more information." echo diff --git a/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh b/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh index 6fa6a0f940b1a..a31118626877a 100644 --- a/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh +++ b/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh @@ -28,7 +28,7 @@ npmConfigHook() { if ! [ -e "$srcLockfile" ]; then echo echo "ERROR: Missing package-lock.json from src. Expected to find it at: $srcLockfile" - echo "Hint: You can use the patches attribute to add a package-lock.json manually to the build." + echo "Hint: You can copy a vendored package-lock.json file via postPatch." echo exit 1 diff --git a/pkgs/build-support/trivial-builders.nix b/pkgs/build-support/trivial-builders.nix index f174424e265d3..80c3214f06a36 100644 --- a/pkgs/build-support/trivial-builders.nix +++ b/pkgs/build-support/trivial-builders.nix @@ -66,14 +66,15 @@ rec { # prevent infinite recursion for the default stdenv value defaultStdenv = stdenv; in - { stdenv ? defaultStdenv + { # which stdenv to use, defaults to a stdenv with a C compiler, pkgs.stdenv - , runLocal ? false + stdenv ? defaultStdenv # whether to build this derivation locally instead of substituting - , derivationArgs ? {} + , runLocal ? false # extra arguments to pass to stdenv.mkDerivation - , name + , derivationArgs ? {} # name of the resulting derivation + , name # TODO(@Artturin): enable strictDeps always }: buildCommand: stdenv.mkDerivation ({ diff --git a/pkgs/build-support/vm/default.nix b/pkgs/build-support/vm/default.nix index 7b66aa3799f37..f66b81299a247 100644 --- a/pkgs/build-support/vm/default.nix +++ b/pkgs/build-support/vm/default.nix @@ -977,45 +977,45 @@ rec { packages = commonDebPackages ++ [ "diffutils" "libc-bin" ]; }; - debian9i386 = { - name = "debian-9.13-stretch-i386"; - fullName = "Debian 9.13 Stretch (i386)"; + debian10i386 = { + name = "debian-10.13-buster-i386"; + fullName = "Debian 10.13 Buster (i386)"; packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/stretch/main/binary-i386/Packages.xz"; - sha256 = "sha256-fFRumd20wuVaYxzw0VPkAw5mQo8kIg+eXII15VSz9wA="; + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/buster/main/binary-i386/Packages.xz"; + hash = "sha256-n9JquhtZgxw3qr9BX0MQoY3ZTIHN0dit+iru3DC31UY="; }; urlPrefix = "mirror://debian"; packages = commonDebianPackages; }; - debian9x86_64 = { - name = "debian-9.13-stretch-amd64"; - fullName = "Debian 9.13 Stretch (amd64)"; + debian10x86_64 = { + name = "debian-10.13-buster-amd64"; + fullName = "Debian 10.13 Buster (amd64)"; packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/stretch/main/binary-amd64/Packages.xz"; - sha256 = "sha256-1p4DEVpTGlBE3PtbQ90kYw4QNHkW0F4rna/Xz+ncMhw="; + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/buster/main/binary-amd64/Packages.xz"; + hash = "sha256-YukIIB3u87jgp9oudwklsxyKVKjSL618wFgDSXiFmjU="; }; urlPrefix = "mirror://debian"; packages = commonDebianPackages; }; - debian10i386 = { - name = "debian-10.9-buster-i386"; - fullName = "Debian 10.9 Buster (i386)"; + debian11i386 = { + name = "debian-11.5-bullseye-i386"; + fullName = "Debian 11.5 Bullseye (i386)"; packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/buster/main/binary-i386/Packages.xz"; - sha256 = "sha256-zlkbKV+IGBCyWKD4v4LFM/EUA4TYS9fkLBPuF6MgUDo="; + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/bullseye/main/binary-i386/Packages.xz"; + hash = "sha256-tHrWSd4K5TCwIaLTPqK/Rcon0O0r+Jsxb7OcchOo8Vo="; }; urlPrefix = "mirror://debian"; packages = commonDebianPackages; }; - debian10x86_64 = { - name = "debian-10.9-buster-amd64"; - fullName = "Debian 10.9 Buster (amd64)"; + debian11x86_64 = { + name = "debian-11.5-bullseye-amd64"; + fullName = "Debian 11.5 Bullseye (amd64)"; packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/buster/main/binary-amd64/Packages.xz"; - sha256 = "sha256-k13toY1b3CX7GBPQ7Jm24OMqCEsgPlGK8M99x57o69o="; + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/bullseye/main/binary-amd64/Packages.xz"; + hash = "sha256-whpBERKOPyhrWguVQ2QchrwRHU4tCkGwu42x6khF/2g="; }; urlPrefix = "mirror://debian"; packages = commonDebianPackages; diff --git a/pkgs/data/fonts/garamond-libre/default.nix b/pkgs/data/fonts/garamond-libre/default.nix new file mode 100644 index 0000000000000..202ae2ce41f1f --- /dev/null +++ b/pkgs/data/fonts/garamond-libre/default.nix @@ -0,0 +1,26 @@ +{ lib, fetchzip }: + +fetchzip rec { + pname = "garamond-libre"; + version = "1.4"; + + url = "https://github.com/dbenjaminmiller/garamond-libre/releases/download/${version}/garamond-libre_${version}.zip"; + stripRoot = false; + + postFetch = '' + install -Dm644 $out/*.otf -t $out/share/fonts/opentype + shopt -s extglob dotglob + rm -rf $out/!(share) + shopt -u extglob dotglob + ''; + + sha256 = "6WiuUe3CHXXL/0G7wURvSIgWPQ4isl50e3OBQ+ui0U4="; + + meta = with lib; { + homepage = "https://github.com/dbenjaminmiller/garamond-libre"; + description = "Garamond Libre font family"; + maintainers = with maintainers; [ drupol ]; + license = licenses.x11; + platforms = platforms.all; + }; +} diff --git a/pkgs/data/fonts/iosevka/bin.nix b/pkgs/data/fonts/iosevka/bin.nix index c797587dd07f2..ac9569fc95fc6 100644 --- a/pkgs/data/fonts/iosevka/bin.nix +++ b/pkgs/data/fonts/iosevka/bin.nix @@ -11,7 +11,7 @@ let (builtins.attrNames (builtins.removeAttrs variantHashes [ "iosevka" ])); in stdenv.mkDerivation rec { pname = "${name}-bin"; - version = "16.7.0"; + version = "16.8.2"; src = fetchurl { url = "https://github.com/be5invis/Iosevka/releases/download/v${version}/ttc-${name}-${version}.zip"; diff --git a/pkgs/data/fonts/iosevka/variants.nix b/pkgs/data/fonts/iosevka/variants.nix index 0edc0984cea14..a1da74c34b6c8 100644 --- a/pkgs/data/fonts/iosevka/variants.nix +++ b/pkgs/data/fonts/iosevka/variants.nix @@ -1,95 +1,95 @@ # This file was autogenerated. DO NOT EDIT! { - iosevka = "0wyi99j9zangbfj8rdfwgmgnl7f2s4d07pc8pvkjnzw8n4nz4rkn"; - iosevka-aile = "1szwyzri6j9rfgw3jrppg1gnj48bl77pvgm944jiwxhdl1dhzlqh"; - iosevka-curly = "0mzdq2shi51c6hhca8waxbj8i0pb3jw7b4rn0h4941kq8y9qddzs"; - iosevka-curly-slab = "106f97mh5ph2ykk2mk4am9vbavr41vznl8f2w02jaj81wk5xv6gd"; - iosevka-etoile = "1axnc8hvwvn0y2pzfid63s3lzzwh3ig89hj7k80cdcrsnbv5wvpi"; - iosevka-slab = "0mgrngn2g5i1s5285ds6x53gwl3ragdr3pkmp3kwk7m88jivx4n8"; - iosevka-ss01 = "0r0zn3dickzpkcqfdy6lw245301v8hqiy073bk7q7dykg7514wic"; - iosevka-ss02 = "05ifncnsy9bfb66qxpx57hkadq4vwa8bb5qki69skwfsfrfc217y"; - iosevka-ss03 = "1hh1x10v3igagaa70xmw7hhfa6jm99pn46w4wlgv0ydfz441hfcd"; - iosevka-ss04 = "13cwjc472gqvkz72lxx82xp9ka71ycdid7zldl5r38sakjqymxcv"; - iosevka-ss05 = "0y4zgda1n4shcqrw950w55jmlh71mi7fc9g6fjjb1ik5v227k8h3"; - iosevka-ss06 = "15xcg3dqjqb9hzzaf7pvq7lnn0qrvk828xy9ngq9xznhdzzlh0s3"; - iosevka-ss07 = "1w2lyqcvcn6k70a00xdi650rsw91lb8rgrbdpb92m4p3lr7b4vzg"; - iosevka-ss08 = "08b38c8vrvys8cxq3gqscr33ijm0wn6xnw6wjr21r8f6y2i1rhfp"; - iosevka-ss09 = "1mgp38665llp1rqlmzr62z5vxxlwl5g75mdd9qf8zah17babi88p"; - iosevka-ss10 = "06f8mkxfrxl7kkph9ljzsgsxf5qlnw0ggkb2bv518ajpycc9g77c"; - iosevka-ss11 = "17nxf0215s8vgyicbj6rhqia4hw5gsrljdk1jc5hd1yd50c8351q"; - iosevka-ss12 = "152f4bljjm3w49x4wfr1fr557pi4qpvgyk6icccrbig4r3idkqhg"; - iosevka-ss13 = "04kh77ry46gdgmp87p3nwbqmrkbwjjvfk2mrb43lw19vwmbax3aw"; - iosevka-ss14 = "1fln5kz531yp8gk447cw71xm9ddvw70dwyamjd9sl39vay32b534"; - iosevka-ss15 = "0iwy88pfxan94zhvjnqxsh9i39r1nzi0hc0q4xi1mqyaygml3y6c"; - iosevka-ss16 = "1xxir89gqbcqms158c1znlnbky39safjcgzyd1qvr5w78w7dz5gc"; - iosevka-ss17 = "0dac2m9vxif6s02ryzx9kw9j87dgm53cjjzh4h6bqm3wqjmy3hgy"; - iosevka-ss18 = "0igj1k7jm1xk649hpn2h3c1n9j8dcb7l5kvr6wb97r8w2s5kiz20"; - sgr-iosevka = "1f6c3sd022ss0m8myb03fpr03d4mmw6yapgamkp8xbskxny11sik"; - sgr-iosevka-aile = "02h8bd89pxdalfd7ysybzr6lrga5vilwsdsmbl9f6c74pdxp9wsq"; - sgr-iosevka-curly = "015wqd61iww7q15hfp4ifk7yb8p2070v0vi1v7jb0zqgim7lky4g"; - sgr-iosevka-curly-slab = "132ixkvfny95nsmil4b68zyag2gg9dxsn7yzfdmzr6ld392a2gxn"; - sgr-iosevka-etoile = "0vgkf40q81bgcm2q8nb4z40lzvib50k5mmsardgwaigwlhsjpnr1"; - sgr-iosevka-fixed = "0y7jrly440k8dq5av6yx257wyvaprh4nr6a0axqd9v9h0kw27s00"; - sgr-iosevka-fixed-curly = "1xvjsnay8bqji6mw13llfmnyzrahqwyymwbalc9gdgxd85abdndm"; - sgr-iosevka-fixed-curly-slab = "0q2s371z6cgnh07g1svl2jn10655kn2wyill1w274sb8qvx972m7"; - sgr-iosevka-fixed-slab = "0q41blbalb9r40c56gci184nbp2nyvglbqyyr2rmv87c2qqvnzrj"; - sgr-iosevka-fixed-ss01 = "05lvvnfa35p2xa1j2ygbwzwmn5jj8djafm2ykjv17992ljs6zlns"; - sgr-iosevka-fixed-ss02 = "1c13rybqmzikjvq7m4nkjkl147m6w7i389r5a9vl3c8v281g89q8"; - sgr-iosevka-fixed-ss03 = "0wykv3wa18i53659avb4n0wirrbcrj24wslwx1g151an9vrfbixq"; - sgr-iosevka-fixed-ss04 = "11k74l40323q0bcz3zf4a7gnpgnf4j2rjrgqqla6nfmjkacbfngy"; - sgr-iosevka-fixed-ss05 = "0p78q0ik8m815shbac2pyw5yas25rbzw7r9abb94md1fh175csx5"; - sgr-iosevka-fixed-ss06 = "1rg0nagpf3nrgmnlmy3lvrr665492ygkdqaxi1js5hqnmy9xhsml"; - sgr-iosevka-fixed-ss07 = "0j2iiv6jzd9v4ggdj88hpyqhmf04rsq8jc6llg50mx6nr89y7fbf"; - sgr-iosevka-fixed-ss08 = "10zlla2qkr6xpvdchawlixfn3yxnakhi0lg3naskk0zj00vifxay"; - sgr-iosevka-fixed-ss09 = "1l0h7m292hi6613j9spfxpy25n74718s0b96sn8ycw3qbpjlybkm"; - sgr-iosevka-fixed-ss10 = "064hjwhi78a7lb3gn8s1ga6kw2sk5j1y38cqrmxizja76msw3cxm"; - sgr-iosevka-fixed-ss11 = "1adnn6fpkx20zfmip62csxrasfn0fs7gxv00q8wkd69chgzz7k6l"; - sgr-iosevka-fixed-ss12 = "1yqv5b8az0dxilvrabm82lkrnvn1x8z43jg1pfh6ykd49kgim5ma"; - sgr-iosevka-fixed-ss13 = "0vkxzb3b3r61z0k6rix6j9paw5kxgd5k3a76k3ri0mw6fnh3kzks"; - sgr-iosevka-fixed-ss14 = "111ck61z1bbcrgrryw3dc1ariicfs7brga8zzrs9angg8xwcdky9"; - sgr-iosevka-fixed-ss15 = "0hb4lh87f0dw7acra9w6j7r17lc9xpfjh8hkp5096fbjfffyn786"; - sgr-iosevka-fixed-ss16 = "1rq4s7rqj0nnkq1b94ahhlqma9x50kagndrfc8wxqz26x1na88a6"; - sgr-iosevka-fixed-ss17 = "1jz54ilc36q6z6s8xqffbrb9g2w6yhikwyr8hjvghb0imvwa99vi"; - sgr-iosevka-fixed-ss18 = "1nsbxq4m2h1vbwcl0zfwmfrd48brlrmi5cb1099ybqqp9lkrpddf"; - sgr-iosevka-slab = "15k6r7847al2wh9df0fzq04brn8scix5d0wwnbbnyy2p8hg8r0jk"; - sgr-iosevka-ss01 = "0yaw30j2wj0i876xkpvh3k76hyyjjbqqm3vfwqn0nahn83sk7lq9"; - sgr-iosevka-ss02 = "048bgm59gnk5qpxfpflj4q8iryjlcnybyaqcmdkwhklqyracqada"; - sgr-iosevka-ss03 = "151ai1pkiszrd1zrdviqd7701hqmp48gqkfn86xz4bw7p84qniyv"; - sgr-iosevka-ss04 = "03ih3c0n0ab3wkp9w6ngzn4x6fmn4z19p506r0fvkg0n8rcmx35v"; - sgr-iosevka-ss05 = "0zh9zb2vl5z2xc4j0ascv2ps6789ll9qgjmvd6hhb23rf540d371"; - sgr-iosevka-ss06 = "15wd5sni08ckpbqr8cnkiv9pwhnqp9jh70nl3wv93bwvyqzycx6p"; - sgr-iosevka-ss07 = "12lgjhqaqj8qag59xz49l0d2wb39aymigfknhxj72yjgqrv6nmli"; - sgr-iosevka-ss08 = "1f8g0rsdjpykq1061hxbk46wl6x7rr6n4n5mx0kxl0q0rry8zk29"; - sgr-iosevka-ss09 = "0zjn4wyldmynldinhiqadpw3mldi46vsnw3wgsq8w0j90hcz1rg8"; - sgr-iosevka-ss10 = "0bxyvm2xs1iqdpwv6vhz0zc6k6h1jd2xr9alc6jhavyzwzgwsrnq"; - sgr-iosevka-ss11 = "1fl2insp3i1q697pim7jbk569cx2dpv0ivs8q1sgk7kl86mq5k8m"; - sgr-iosevka-ss12 = "1h003xf0g5w6jmcl8882lmsi3ri0dqnayiq37rwlygbi3zhchgpi"; - sgr-iosevka-ss13 = "1r30r7inci5clyp7wxl5a8jcvanlipwwbx5nc7vwq8n7q48n3i0j"; - sgr-iosevka-ss14 = "0h2fqnlrg3f5hba7v2v2xnfp7z0cdipkgj9g1iyzr71r1fpm4wwi"; - sgr-iosevka-ss15 = "03kdf4lvg9x6g9130l4by4q5bh0fra3mpvyap29rs1gm47w0n84k"; - sgr-iosevka-ss16 = "0cmkw1654figbsj9biqcjh6x86dffhn10b05y0s4qlj1ackzpciz"; - sgr-iosevka-ss17 = "0iyi20lzswcshikqvxlmbf8wkyfs8xz8bjw6lxix81818skgavhx"; - sgr-iosevka-ss18 = "0m82akjnb1xkqissh86s3vhm1fbsy9wlkqabcfhk1jyhj3w2q3i8"; - sgr-iosevka-term = "0r1v50n1fjy40df16kjcv92ihnka9sb1h1lkwigvy12pp8df0fbw"; - sgr-iosevka-term-curly = "1hk42bsf157131smbxali2g681jwh4fynjhnswsd05k04p20lndp"; - sgr-iosevka-term-curly-slab = "092fx48mf26zpaj2qvbbhr2qi3bpqhyhynznffdjadzdqnsqyxyy"; - sgr-iosevka-term-slab = "0kndz8q7him9wkfiaxkjfjkqsmsqg5y6n9bmzh0gvz304019s1gz"; - sgr-iosevka-term-ss01 = "0awxqg4r5pq7kcvqjabsgzjagmf66ads8bp0w1bw27w6f5vc21hf"; - sgr-iosevka-term-ss02 = "1zfvjw32z8kf25j9gvdq7aa4p94s4r8vvh7kncnxcm2prrc40fvc"; - sgr-iosevka-term-ss03 = "122qm2s6w6clw4fgy59cj8p54mlyavyfr81g06zjgy46i8skrpsw"; - sgr-iosevka-term-ss04 = "14y4rarp17qm0qy59rshhd581pdn1niqx6h2y74yyc6kms6q94rn"; - sgr-iosevka-term-ss05 = "18cv0bl7ngb4gp5phzh77r8q0y863ym598px2n5jf00maaigfahc"; - sgr-iosevka-term-ss06 = "14rp2kd2b609ijhg8gmnc5sgjniwgbfkcnp5xa5m9bbshbjmikqn"; - sgr-iosevka-term-ss07 = "09sppprv46d62cyp0aw77p3wr6s514qzc5p3lb1qxiakic5gn2js"; - sgr-iosevka-term-ss08 = "02slv5va9yn09pcscmx6snjp2swjznrrhnwjf9fwi74siypza1xx"; - sgr-iosevka-term-ss09 = "0hdhsd1rkiqgz91x9kkn2rd37ya6q91qkyv3w5ry8flfffba421z"; - sgr-iosevka-term-ss10 = "13b29x2znqm8l3ydakc0sq5skr1mk4xjfikvayp5vc1a4krjyzwn"; - sgr-iosevka-term-ss11 = "15qq6lvf7mdnch20shsigrr7xk7qbgr2wz7qbqwyaidd1vlk57px"; - sgr-iosevka-term-ss12 = "09nyj7dcc7ldi7kn8scxjaszp8gxzdxq860zig1bpsjrssm20870"; - sgr-iosevka-term-ss13 = "0v28swz2dbg8kc2wx5h4llkki5i1rpdk5f6ip08xjzlb35bphwwk"; - sgr-iosevka-term-ss14 = "1q94pvfs2yqz8sjvpchs44w83rnf08v6njz27pz4da5g1v7qg4s2"; - sgr-iosevka-term-ss15 = "077cl1259xgfb26p67wih69vq2vw20ardq479jajc5r7cn2cbxia"; - sgr-iosevka-term-ss16 = "0fy1810yxi2faacdc1fsy0nlzh781fijs6l8kfsh2xb22sk2ydf2"; - sgr-iosevka-term-ss17 = "1m8jv2rvxsj0aj1lwz38radvq2fivx1qgivsaly2sf992lga5w3v"; - sgr-iosevka-term-ss18 = "0rm8ki7g0brwcxmidapyn5r2jd55n9hlx2prhzskgyph4ikmnmrh"; + iosevka = "1zdjwczfmb6swa4yza4nydhvspj9wvi1lvd4d9inr9ssc0ky0h0k"; + iosevka-aile = "15ahii9597g8p2m0abx3zha26093gsnihn66nm9l1jqrda8s3bfx"; + iosevka-curly = "1xqxzj9zxfxy3mpq9kjfzjxpi106qp6dq9x32vdfm192l2kcz4dq"; + iosevka-curly-slab = "0rp6p5v1jd4ihgkshmzm90b9i2kafz94ng2f0lxqrjkh88xg2qkz"; + iosevka-etoile = "1ml7wmkq7im97z9zgg184bw0a3wzk5rd10jx29ybb4hfklp5mpgk"; + iosevka-slab = "1dydq9pw0n9kj1nwbyrcb7cxsmjbs69fj91rnl9ayjp6fis2npfl"; + iosevka-ss01 = "0q26f6n986cs6bzbyqsd0rnk064cxyr7z6iskn1gbf3138cj1q2j"; + iosevka-ss02 = "1g93qx9b7l5fq5lbxjgvfxmzzmmplgd3cygc3kl7z0xdqfzqh735"; + iosevka-ss03 = "0vfg0qr0w22yq0igzm0wpd3gf74n2w1xsk7lpzsxcrpljzmjrry5"; + iosevka-ss04 = "10phf294w91b4m259pgddpih5r9ys49fib419vnh0rcn3f3c0vmz"; + iosevka-ss05 = "074551ir5a45c7k00bfsbp162vc537xyqdqgi6h7j7lkhn7rfjvg"; + iosevka-ss06 = "09jn7lk0gc3ns3640g2ng2jh44g180kjcx4fcyacipx5sfwwhjaf"; + iosevka-ss07 = "18jn9png6jqh5g7883v50za44sa1h78ni8jmpzmfpnhhsvxfq6f2"; + iosevka-ss08 = "0drgk3r1p4pn5vvdjrms3vivzizd7jkpla40z0gvi7832cssxk0d"; + iosevka-ss09 = "0xynk2m5nhhlk34c2d3962mcz8mh7n2f64jd4n8l6v3mibcmjh8n"; + iosevka-ss10 = "1yygdiikbdklk7ddyg3mmvypcmwbm9iym63qvabv0n2dxm5fjylz"; + iosevka-ss11 = "0as42f552xdpla332sabrxf98l33rv17qzig8f2g38cvwhdp7wc1"; + iosevka-ss12 = "179499aa1yh5hp0zlwvbyfixi72qky59lba5hd9b53s81jxph778"; + iosevka-ss13 = "0dprpbcykq5a4gz9941vbiaj7l36xvwip19l1g0422ffg9yrlqvg"; + iosevka-ss14 = "04843xsmab4y3hxicpkv6ard7kynm6dhyxxsmyz0n3rvl0jk4krj"; + iosevka-ss15 = "1j0ljgpz3x5wkcj1jx8dnb5ccp1fcyg4i8p40cr01azmbxhwj5m5"; + iosevka-ss16 = "0gn6x6f03mccfq6lfglbfzxgg74v30k7nadqjlj08fsxp37iiqzc"; + iosevka-ss17 = "1qnh6bqz15h1xaxcqjsbiidaqbrjikc20fys5fwjflh213csy2n8"; + iosevka-ss18 = "0p85kp81ylm8fm5fgyp6sv9rcf8gvznpfgn7mbw26y1lx7gmh6xy"; + sgr-iosevka = "1g97vv4n020r8j9k4w7dzam2xvfqs80nbfvmxkswsnfg3kys1n58"; + sgr-iosevka-aile = "0ysds3663psv1nr6nyzwxm47vg02jhpgssm3lmdls4g07y93f1fl"; + sgr-iosevka-curly = "1kzclraj9ndcask13f4iwvf360zm7p78xqf645wbfa9h4rzd93l5"; + sgr-iosevka-curly-slab = "12y4fyf22mzrnbzl9785ffg6pqcgbdbss1hambf03av2cdvc7sfi"; + sgr-iosevka-etoile = "1d04q0wnsymfv3zklfz77yvq1xa1zlj1fi2ihljlzrlfw8ybn90c"; + sgr-iosevka-fixed = "0p6h9hhqbjn9y7dvf78fm0jy6wd884gh4cn4k6070v0psm5xp0y1"; + sgr-iosevka-fixed-curly = "0l4yd4p8gzsmxgfh90l7z2x6l8v56v5jwsyshq6jawc8xcbny3rb"; + sgr-iosevka-fixed-curly-slab = "13cg8by9j57r2vbh0anms61dcxvxrzf3yw91s1g6nmhllqd5aqrq"; + sgr-iosevka-fixed-slab = "03v8i2p2sww6p2dmzq1xqrrik2k1qz91xn9d9ww2zwz47hkgbysm"; + sgr-iosevka-fixed-ss01 = "1caliz8g63cny7zrq5gkan2366c381d2rl48jnqmmpij3zsx8axz"; + sgr-iosevka-fixed-ss02 = "01sgb5mrrry2nln0yfzm5z00x5rv28iav3xpww33xcrgwvvvxfp0"; + sgr-iosevka-fixed-ss03 = "076ayn5y5gxla7w9ildg445wlc2r36vfnhqim7wkphach9mqjn1j"; + sgr-iosevka-fixed-ss04 = "0x1bd9vy8a0afykb97yl669hsf5mn2gjm9ly5hlb3bnmxaw8dchj"; + sgr-iosevka-fixed-ss05 = "0f6yn9z3sv28ilx1j0sh0yw19m0kzi81razq7q601k7q4klzm7dw"; + sgr-iosevka-fixed-ss06 = "0qjsg1xl6x6355c5x2lakh5cbv1vjs1z1s13ikbqhv8wckklmbb0"; + sgr-iosevka-fixed-ss07 = "0z8yy005l4srqgi2sh64vj1238ydw04kg4vqzj612bmydp5r4vbj"; + sgr-iosevka-fixed-ss08 = "0dh9gr3qhpw2ap3j69nnsbiqi04y59rgvpwxgw2z8jcdksh7syal"; + sgr-iosevka-fixed-ss09 = "1lf4vi363rz7mchin262zwz21lpnp1k77v934858qyspc8fkgf1j"; + sgr-iosevka-fixed-ss10 = "0i7lkr892mq1nks2fsll2lhrzgad0q4hpvl4wafd2jx9wi21b158"; + sgr-iosevka-fixed-ss11 = "13p1z9x9yi064p1jh0gybrbv2np5ynyggmasf7259cs1l89fqci4"; + sgr-iosevka-fixed-ss12 = "1ydkj92f9nyyxhvcscxahnjp75pd66ps0flj09f8kk7lbs9vcx4f"; + sgr-iosevka-fixed-ss13 = "1gkzv8l298kyvgkil47d6gshjvjfdgr0chjhnkl7yqqmwwl23rn2"; + sgr-iosevka-fixed-ss14 = "0klm69qmirappqijsl0si5yv8pk56k5d5jqpib8l0scb99pxvi2y"; + sgr-iosevka-fixed-ss15 = "0ym7zdvh0g52jkpijls572hjyv8jk47srq4nqvig0qygkx3w24nf"; + sgr-iosevka-fixed-ss16 = "0clhkh8lxn0garhsj9jca2iw173gihac10bcm12i0mq8ca8qxrhl"; + sgr-iosevka-fixed-ss17 = "1225rd8w2c65zvmq5gbg2f8n7bnmqdjf9g0cjqi42gwns840k81h"; + sgr-iosevka-fixed-ss18 = "0r47grjpbdk6ccrdvdz7vsln5923wl4xb4xcm3q803p8sfb4h38x"; + sgr-iosevka-slab = "1f96ml19ph39bnkdfrag84z1w7d6r7l5sk8vl2gw55hqwb9h423y"; + sgr-iosevka-ss01 = "167s8175qcq544d0j21rwrjispdrw8q41p3dfd9kri4x3cbgqndy"; + sgr-iosevka-ss02 = "0hj18h8hz18ggqm4mj4cdqhp7aa2w8p647y2my5rh989k8y5pgw8"; + sgr-iosevka-ss03 = "012mxn8azidrjq39jvvscmlazvx4lv94ibvfp3acfp7chhgshi4g"; + sgr-iosevka-ss04 = "1g1wi82baa71p1596430akdd0hhxzp7fa1gimjkvl871h7nal5r3"; + sgr-iosevka-ss05 = "1s1jmr4aam0584gy9jbk8fxymn2y9vfz6yd12bkd7l8m73y819bw"; + sgr-iosevka-ss06 = "1bqrm6g8q77g8b9b14dbwnj9gc0g68niw32fw7fjzpypgsgwh5y3"; + sgr-iosevka-ss07 = "0mw4qmfnjdncyk8r30km1pvcmv46dlps6zkq7c8szy2lsnlshspf"; + sgr-iosevka-ss08 = "0kikssw16p3bnlm796fbdkzl5vwm496lz4j9c5ms9hgpk7j1qxcc"; + sgr-iosevka-ss09 = "02vrzi199qszm10jmnijx786lmkcx0npfaachp51n9lpsvs23i64"; + sgr-iosevka-ss10 = "138lhzjxq9ar8dmm1cdjdvdkn3blhi423hcvhr6wfxps629xvlw2"; + sgr-iosevka-ss11 = "08ry7fbfswri4vq20513lj4xfjv70dqvs8aadqx0gwkcknmdawq2"; + sgr-iosevka-ss12 = "1nlzzxkp2gn5hx2js33c86w7823ircpi2d2s63a6irgqwzm0dc53"; + sgr-iosevka-ss13 = "0yrzqhns7a82fpwl7gndjpaln3251s89vc91rc1lc4rcmqzpjdfy"; + sgr-iosevka-ss14 = "1km2bvnrp5g1axfl59agh9qrkdayh5h23pdmf6dxw8a8s3sknf7w"; + sgr-iosevka-ss15 = "0fym1sgf375d8y8qbgyjx9x2y5h0iidnbd7fxqk1jdzcm4ndnrv5"; + sgr-iosevka-ss16 = "0h5rcvqw1xwvhkcdb082zbd3hl0ymnv8nxvf9g8lprpwb222ag8b"; + sgr-iosevka-ss17 = "1s7p4ydpgkhxfjsp3vqn059l43gpxmlf54pawl6i53ldzgjsfx1a"; + sgr-iosevka-ss18 = "0rpfvl3yffpg5c3155pmswpg31qj2wd2zh1k42r5k84ws9l9ns7d"; + sgr-iosevka-term = "0i2bxrfpvcg4agrsj6d6dfiim2lz9p7xm17b5928xbk5cxl08v9b"; + sgr-iosevka-term-curly = "0k0zqfkkjk8fi88gqnr44hcbm3y4wpx4p99dqv51ssra7ggqbs5z"; + sgr-iosevka-term-curly-slab = "1krc6mva1mif6xlnfxxqnxxfaljszg3zkivgvmbkaqgb7y39ph87"; + sgr-iosevka-term-slab = "0r4f29218l2mql9bld488bdmzzgqav81i757vfj6qrc5m6w6znah"; + sgr-iosevka-term-ss01 = "1hvi8xc0zagx267vfhwymnyq5y1bb9p6d7vs5nijrkq7hlkyl8j3"; + sgr-iosevka-term-ss02 = "0pha6nz5736ygv6mhf6xk5kp29wxg5sn336rh45w3q9dh3df2bh0"; + sgr-iosevka-term-ss03 = "169lxbrr6i40cpa45381r04q0q8vgmhaypdzp30lg8gm69wpgs87"; + sgr-iosevka-term-ss04 = "0273cinikxp1xrxzcs0dn51xsi1h59yw7pdvaciqys62vb09cai8"; + sgr-iosevka-term-ss05 = "0rax2nwzgy9pmw4qld2spfpsv98vs4mpqz0zw6zr1dd6jdhzvr3b"; + sgr-iosevka-term-ss06 = "1r2ja3idf68kvsk7r3mjx2zqjdx41rvsb9xhxnp9llga51r3y4f7"; + sgr-iosevka-term-ss07 = "0rb1wq206p4g6i5v32x0y2lr1vs93qg5hfichbpi3bdjjpwlvg10"; + sgr-iosevka-term-ss08 = "1bsnmvdabnrj65s9d9i0s3q4zn1b2w2xvsqsjjgs3iwsbhy5b7n3"; + sgr-iosevka-term-ss09 = "1vm3jkv58n1zf96hgd28mrqls23zdk8cpml9wvmlj7p9y7x0qcxs"; + sgr-iosevka-term-ss10 = "0120gip4r40dzmc5vpl9avhzyfh16w0vdqw8ks259arcd72s0j4v"; + sgr-iosevka-term-ss11 = "14rf4h9zdnvkjsvwcikmgpnlpypk1qpdld1sw5wf1drbarpxynkl"; + sgr-iosevka-term-ss12 = "0g6rrsz0fc2szjxp4hxsw0ji4vcdhq5qx32hq83is2iqkkbylsz9"; + sgr-iosevka-term-ss13 = "19nk2wn13xnacih8qydxsjcpqwaqyklc6dsrx9b2rv7x8ksxyzdp"; + sgr-iosevka-term-ss14 = "16cjsfk5gn77f4h5g29cx5jj3zrxcl26izyivs5n161xvrq95inb"; + sgr-iosevka-term-ss15 = "07y306f40dmfdzzgfk2mmq3aipwzqcsff7yjcd3g9hn6cznn85jq"; + sgr-iosevka-term-ss16 = "0lbmqlsd7zlrfy9fxrj6ngnw2lwvv437z3ibw33qgch1vv4qz4yz"; + sgr-iosevka-term-ss17 = "08w4x5dd7klnafp6ifnd61m1s3q9ncbr1llx8ywa00s1dfxxsc0f"; + sgr-iosevka-term-ss18 = "0b2vxkc8c2jmpxlvj2gdy2ghygsiifrp4pivmpgp3amwa913smsk"; } diff --git a/pkgs/data/icons/fluent-icon-theme/default.nix b/pkgs/data/icons/fluent-icon-theme/default.nix index 3624f4b1b34a5..e7553b4b74d42 100644 --- a/pkgs/data/icons/fluent-icon-theme/default.nix +++ b/pkgs/data/icons/fluent-icon-theme/default.nix @@ -6,12 +6,13 @@ , jdupes , roundedIcons ? false , blackPanelIcons ? false +, allColorVariants ? false , colorVariants ? [ ] , }: let pname = "Fluent-icon-theme"; in -lib.checkListOfEnum "${pname}: available color variants" [ "standard" "green" "grey" "orange" "pink" "purple" "red" "yellow" "teal" "all" ] colorVariants +lib.checkListOfEnum "${pname}: available color variants" [ "standard" "green" "grey" "orange" "pink" "purple" "red" "yellow" "teal" ] colorVariants stdenvNoCC.mkDerivation rec { inherit pname; @@ -43,10 +44,11 @@ stdenvNoCC.mkDerivation rec { ./install.sh --dest $out/share/icons \ --name Fluent \ ${builtins.toString colorVariants} \ + ${lib.optionalString allColorVariants "--all"} \ ${lib.optionalString roundedIcons "--round"} \ ${lib.optionalString blackPanelIcons "--black"} - jdupes --link-soft --recurse $out/share + jdupes --quiet --link-soft --recurse $out/share runHook postInstall ''; diff --git a/pkgs/data/icons/nordzy-cursor-theme/default.nix b/pkgs/data/icons/nordzy-cursor-theme/default.nix index ee18fe2877270..394626cec3371 100644 --- a/pkgs/data/icons/nordzy-cursor-theme/default.nix +++ b/pkgs/data/icons/nordzy-cursor-theme/default.nix @@ -5,24 +5,18 @@ stdenvNoCC.mkDerivation rec { pname = "nordzy-cursor-theme"; - version = "0.1.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "alvatip"; repo = "Nordzy-cursors"; rev = "v${version}"; - sha256 = "XabfKFyeII7Xl+ozzpPnc4xFH4B7GzCTLq4M1QPSZPw="; + sha256 = "sha256-q9PEEyxejRQ8UCwbqsfOCL7M70pLCOLyCx8gEFmZkWA="; }; installPhase = '' mkdir -p $out/share/icons - - cp -r nordzy-dark/ $out/share/icons/Nordzy-cursors - mv $out/share/icons/Nordzy-cursors/index.theme $out/share/icons/Nordzy-cursors/cursor.theme - mv $out/share/icons/Nordzy-cursors/Nordzy-cursors $out/share/icons/Nordzy-cursors/cursors - cp -r nordzy-white/ $out/share/icons/Nordzy-white-cursors - mv $out/share/icons/Nordzy-white-cursors/index.theme $out/share/icons/Nordzy-white-cursors/cursor.theme - mv $out/share/icons/Nordzy-white-cursors/Nordzy-white-cursors $out/share/icons/Nordzy-white-cursors/cursors + cp -r Nordzy-cursors{,-white,-lefthand} $out/share/icons ''; meta = with lib; { diff --git a/pkgs/data/misc/dtv-scan-tables/default.nix b/pkgs/data/misc/dtv-scan-tables/default.nix new file mode 100644 index 0000000000000..741823871f4a1 --- /dev/null +++ b/pkgs/data/misc/dtv-scan-tables/default.nix @@ -0,0 +1,32 @@ +{ lib +, stdenv +, fetchFromGitHub +, v4l-utils +}: + +stdenv.mkDerivation rec { + pname = "dtv-scan-tables"; + version = "20221027"; + + src = fetchFromGitHub { + owner = "tvheadend"; + repo = "dtv-scan-tables"; + rev = "2a3dbfbab129c00d3f131c9c2f06b2be4c06fec6"; + hash = "sha256-bJ+naUs3TDFul4PmpnWYld3j1Se+1X6U9jnECe3sno0="; + }; + + nativeBuildInputs = [ + v4l-utils + ]; + + installFlags = [ + "DATADIR=$(out)" + ]; + + meta = with lib; { + description = "Digital TV scan tables"; + homepage = "https://github.com/tvheadend/dtv-scan-tables"; + license = with licenses; [ gpl2Only lgpl21Only ]; + maintainers = with maintainers; [ ]; + }; +} diff --git a/pkgs/data/misc/hackage/pin.json b/pkgs/data/misc/hackage/pin.json index 5b654ec8ad0da..2ab1bc7b51bcf 100644 --- a/pkgs/data/misc/hackage/pin.json +++ b/pkgs/data/misc/hackage/pin.json @@ -1,6 +1,6 @@ { - "commit": "e2ccf8a8796c9192280f796ce0f5d98ec783f856", - "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/e2ccf8a8796c9192280f796ce0f5d98ec783f856.tar.gz", - "sha256": "092g4pbxyhkw1isbib967v5aw16iqs3w5iqcicv1irr4rphsr06z", - "msg": "Update from Hackage at 2022-11-11T17:48:48Z" + "commit": "d2f407d64c568ff572505378248cd834f808f6e0", + "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/d2f407d64c568ff572505378248cd834f808f6e0.tar.gz", + "sha256": "0agbmi2gjrg5gnp8dy76770lyh3ny42clm55wlr529320wnc14wm", + "msg": "Update from Hackage at 2022-12-18T22:10:13Z" } diff --git a/pkgs/data/misc/v2ray-domain-list-community/default.nix b/pkgs/data/misc/v2ray-domain-list-community/default.nix index 9fd794d9d5bb8..3d44e34f2b0d2 100644 --- a/pkgs/data/misc/v2ray-domain-list-community/default.nix +++ b/pkgs/data/misc/v2ray-domain-list-community/default.nix @@ -3,12 +3,12 @@ let generator = pkgsBuildBuild.buildGoModule rec { pname = "v2ray-domain-list-community"; - version = "20221130032508"; + version = "20221223102220"; src = fetchFromGitHub { owner = "v2fly"; repo = "domain-list-community"; rev = version; - sha256 = "sha256-1UkP88HGh0KBYaekskeQHkJh02veUYmATKJD/wy4erc="; + sha256 = "sha256-bvTNxJcogF3KxZbC8jW0PMIiJJZnzubWybDcNK7id8s="; }; vendorSha256 = "sha256-CCY3CgjA1w4svzmkaI2Jt272Rrt5UOt5sbVDAWRRfzk="; meta = with lib; { diff --git a/pkgs/data/misc/v2ray-geoip/default.nix b/pkgs/data/misc/v2ray-geoip/default.nix index 2842394f7347f..4cb78dcf7c992 100644 --- a/pkgs/data/misc/v2ray-geoip/default.nix +++ b/pkgs/data/misc/v2ray-geoip/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "v2ray-geoip"; - version = "202212150047"; + version = "202212220043"; src = fetchFromGitHub { owner = "v2fly"; repo = "geoip"; - rev = "29c096b1285812a0a9a955b98ff2998c46f9b80a"; - sha256 = "sha256-44kP+4Bc7fwxNViWiKo7jLtUov+7k60v+7NF7CTkbjg="; + rev = "4a54320369805321b90c7c5ca4cdda4f12bdd295"; + sha256 = "sha256-PFbjzzjeCKL9aak45B+R5Y+H3fTBzdXpyEvvEEdInbQ="; }; installPhase = '' diff --git a/pkgs/data/themes/arc/default.nix b/pkgs/data/themes/arc/default.nix index ef05338cf5aef..17089285f2762 100644 --- a/pkgs/data/themes/arc/default.nix +++ b/pkgs/data/themes/arc/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "arc-theme"; - version = "20220405"; + version = "20221218"; src = fetchFromGitHub { owner = "jnsh"; repo = pname; rev = version; - sha256 = "sha256-CBj/SpBWH5xdNCQSJquqIntcmfARI7Cud76Tp8txXL4="; + sha256 = "sha256-7VmqsUCeG5GwmrVdt9BJj0eZ/1v+no/05KwGFb7E9ns="; }; nativeBuildInputs = [ diff --git a/pkgs/data/themes/fluent-gtk-theme/default.nix b/pkgs/data/themes/fluent-gtk-theme/default.nix new file mode 100644 index 0000000000000..3359e6e1b1289 --- /dev/null +++ b/pkgs/data/themes/fluent-gtk-theme/default.nix @@ -0,0 +1,76 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +, gitUpdater +, gnome-themes-extra +, gtk-engine-murrine +, jdupes +, sassc +, themeVariants ? [] # default: blue +, colorVariants ? [] # default: all +, sizeVariants ? [] # default: standard +, tweaks ? [] +}: + +let + pname = "fluent-gtk-theme"; + +in +lib.checkListOfEnum "${pname}: theme variants" [ "default" "purple" "pink" "red" "orange" "yellow" "green" "teal" "grey" "all" ] themeVariants +lib.checkListOfEnum "${pname}: color variants" [ "standard" "light" "dark" ] colorVariants +lib.checkListOfEnum "${pname}: size variants" [ "standard" "compact" ] sizeVariants +lib.checkListOfEnum "${pname}: tweaks" [ "solid" "float" "round" "blur" "noborder" "square" ] tweaks + +stdenvNoCC.mkDerivation rec { + inherit pname; + version = "2022-12-15"; + + src = fetchFromGitHub { + owner = "vinceliuice"; + repo = pname; + rev = version; + hash = "sha256-lGT6MIpc7cdAznZlbSJJ7aBzZPHucyfR8ZNMdJI0LP8="; + }; + + nativeBuildInputs = [ + jdupes + sassc + ]; + + buildInputs = [ + gnome-themes-extra + ]; + + propagatedUserEnvPkgs = [ + gtk-engine-murrine + ]; + + postPatch = '' + patchShebangs install.sh + ''; + + installPhase = '' + runHook preInstall + + name= HOME="$TMPDIR" ./install.sh \ + ${lib.optionalString (themeVariants != []) "--theme " + builtins.toString themeVariants} \ + ${lib.optionalString (colorVariants != []) "--color " + builtins.toString colorVariants} \ + ${lib.optionalString (sizeVariants != []) "--size " + builtins.toString sizeVariants} \ + ${lib.optionalString (tweaks != []) "--tweaks " + builtins.toString tweaks} \ + --dest $out/share/themes + + jdupes --quiet --link-soft --recurse $out/share + + runHook postInstall + ''; + + passthru.updateScript = gitUpdater { }; + + meta = with lib; { + description = "Fluent design gtk theme"; + homepage = "https://github.com/vinceliuice/Fluent-gtk-theme"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = [ maintainers.romildo ]; + }; +} diff --git a/pkgs/data/themes/gruvbox-gtk-theme/default.nix b/pkgs/data/themes/gruvbox-gtk-theme/default.nix new file mode 100644 index 0000000000000..a221918ad10d7 --- /dev/null +++ b/pkgs/data/themes/gruvbox-gtk-theme/default.nix @@ -0,0 +1,42 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +, gnome-themes-extra +, gtk-engine-murrine +}: +stdenvNoCC.mkDerivation rec { + pname = "gruvbox-gtk-theme"; + version = "unstable-2022-12-09"; + + src = fetchFromGitHub { + owner = "Fausto-Korpsvart"; + repo = "Gruvbox-GTK-Theme"; + rev = "c3172d8dcba66f4125a014d280d41e23f0b95cad"; + sha256 = "1411mjlcj1d6kw3d3h1w9zsr0a08bzl5nddkkbv7w7lf67jy9b22"; + }; + + propagatedUserEnvPkgs = [ + gtk-engine-murrine + ]; + + buildInputs = [ + gnome-themes-extra + ]; + + dontBuild = true; + + installPhase = '' + runHook preInstall + mkdir -p $out/share/themes + cp -a themes/* $out/share/themes + runHook postInstall + ''; + + meta = with lib; { + description = "A Gtk theme based on the Gruvbox colour pallete"; + homepage = "https://www.pling.com/p/1681313/"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = [ maintainers.math-42 ]; + }; +} diff --git a/pkgs/desktops/cinnamon/cinnamon-common/default.nix b/pkgs/desktops/cinnamon/cinnamon-common/default.nix index 99df416053263..c0c63675cb50e 100644 --- a/pkgs/desktops/cinnamon/cinnamon-common/default.nix +++ b/pkgs/desktops/cinnamon/cinnamon-common/default.nix @@ -151,6 +151,8 @@ stdenv.mkDerivation rec { sed "s|/usr/share/sounds|/run/current-system/sw/share/sounds|g" -i ./files/usr/share/cinnamon/cinnamon-settings/bin/SettingsWidgets.py + sed "s|/usr/share/%s|/run/current-system/sw/share/%s|g" -i ./files/usr/share/cinnamon/cinnamon-settings/modules/cs_themes.py + sed "s|\"upload-system-info\"|\"${xapp}/bin/upload-system-info\"|g" -i ./files/usr/share/cinnamon/cinnamon-settings/modules/cs_info.py sed "s|/usr/bin/cinnamon-screensaver-command|/run/current-system/sw/bin/cinnamon-screensaver-command|g" \ diff --git a/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix b/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix index dca6169b0da52..981b6a5d4578d 100644 --- a/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix +++ b/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix @@ -93,6 +93,13 @@ stdenv.mkDerivation rec { sed "s|/usr/share/locale|/run/current-system/sw/share/locale|g" -i ./src/cinnamon-screensaver-main.py ''; + preFixup = '' + # https://github.com/NixOS/nixpkgs/issues/101881 + gappsWrapperArgs+=( + --prefix XDG_DATA_DIRS : "${gnome.caribou}/share" + ) + ''; + meta = with lib; { homepage = "https://github.com/linuxmint/cinnamon-screensaver"; description = "The Cinnamon screen locker and screensaver program"; diff --git a/pkgs/desktops/cinnamon/default.nix b/pkgs/desktops/cinnamon/default.nix index fbff8c60fa3f2..f991c970bfcaf 100644 --- a/pkgs/desktops/cinnamon/default.nix +++ b/pkgs/desktops/cinnamon/default.nix @@ -12,6 +12,13 @@ lib.makeScope pkgs.newScope (self: with self; { installPhase = "mv svg $out/share/iso-flags-svg"; }); + # Extensions added here will be shipped by default + nemoExtensions = [ + folder-color-switcher + nemo-fileroller + nemo-python + ]; + # blueberry -> pkgs/tools/bluetooth/blueberry/default.nix bulky = callPackage ./bulky { }; cinnamon-common = callPackage ./cinnamon-common { }; @@ -24,7 +31,11 @@ lib.makeScope pkgs.newScope (self: with self; { cinnamon-session = callPackage ./cinnamon-session { }; cinnamon-settings-daemon = callPackage ./cinnamon-settings-daemon { }; cjs = callPackage ./cjs { }; + folder-color-switcher = callPackage ./folder-color-switcher { }; nemo = callPackage ./nemo { }; + nemo-fileroller = callPackage ./nemo-extensions/nemo-fileroller { }; + nemo-python = callPackage ./nemo-extensions/nemo-python { }; + nemo-with-extensions = callPackage ./nemo/wrapper.nix { }; mint-artwork = callPackage ./mint-artwork { }; mint-cursor-themes = callPackage ./mint-cursor-themes { }; mint-themes = callPackage ./mint-themes { }; diff --git a/pkgs/desktops/cinnamon/folder-color-switcher/default.nix b/pkgs/desktops/cinnamon/folder-color-switcher/default.nix new file mode 100644 index 0000000000000..a3909b820ba92 --- /dev/null +++ b/pkgs/desktops/cinnamon/folder-color-switcher/default.nix @@ -0,0 +1,44 @@ +{ stdenvNoCC +, lib +, fetchFromGitHub +, gettext +}: + +stdenvNoCC.mkDerivation rec { + pname = "folder-color-switcher"; + version = "1.5.5"; + + src = fetchFromGitHub { + owner = "linuxmint"; + repo = pname; + # They don't really do tags, this is just a named commit. + rev = "5e0b768b3a5bf88a828a2489b9428997b797c1ed"; + sha256 = "sha256-DU75LM5v2/E/ZmqQgyiPsOOEUw9QQ/NXNtGDFzzYvyY="; + }; + + nativeBuildInputs = [ + gettext + ]; + + postPatch = '' + substituteInPlace usr/share/nemo-python/extensions/nemo-folder-color-switcher.py \ + --replace "/usr/share" "$out/share" + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out + mv usr/share $out + + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://github.com/linuxmint/folder-color-switcher"; + description = "Change folder colors for Nemo and Caja"; + license = licenses.gpl3Only; + platforms = platforms.linux; + maintainers = teams.cinnamon.members; + }; +} diff --git a/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix b/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix new file mode 100644 index 0000000000000..7153ec0865c50 --- /dev/null +++ b/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix @@ -0,0 +1,52 @@ +{ stdenv +, lib +, fetchFromGitHub +, meson +, pkg-config +, ninja +, glib +, gtk3 +, nemo +, gnome +}: + +stdenv.mkDerivation rec { + pname = "nemo-fileroller"; + version = "5.6.1"; + + src = fetchFromGitHub { + owner = "linuxmint"; + repo = "nemo-extensions"; + rev = "nemo-fileroller-${version}"; + sha256 = "sha256-dPmAHuJ0ZRTAwhnMMZEu1e9+qZRYCnlaaoCdUP45W+s="; + }; + + sourceRoot = "${src.name}/nemo-fileroller"; + + nativeBuildInputs = [ + meson + pkg-config + ninja + ]; + + buildInputs = [ + glib + gtk3 + nemo + ]; + + postPatch = '' + substituteInPlace src/nemo-fileroller.c \ + --replace "file-roller" "${lib.getExe gnome.file-roller}" + ''; + + PKG_CONFIG_LIBNEMO_EXTENSION_EXTENSIONDIR = "${placeholder "out"}/${nemo.extensiondir}"; + + meta = with lib; { + homepage = "https://github.com/linuxmint/nemo-extensions/tree/master/nemo-fileroller"; + description = "Nemo file roller extension"; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = teams.cinnamon.members; + }; +} diff --git a/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix b/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix new file mode 100644 index 0000000000000..bc43f2aa08489 --- /dev/null +++ b/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix @@ -0,0 +1,68 @@ +{ stdenv +, lib +, fetchFromGitHub +, meson +, pkg-config +, ninja +, glib +, gtk3 +, nemo +, python3 +, substituteAll +}: + +stdenv.mkDerivation rec { + pname = "nemo-python"; + version = "5.6.0"; + + src = fetchFromGitHub { + owner = "linuxmint"; + repo = "nemo-extensions"; + rev = version; + sha256 = "sha256-cxutiz5bc/dZ9D7XzvMWodWNYvNJPj+5IhJDPJwnb5I="; + }; + + sourceRoot = "${src.name}/nemo-python"; + + patches = [ + # Load extensions from NEMO_PYTHON_EXTENSION_DIR environment variable + # https://github.com/NixOS/nixpkgs/issues/78327 + ./load-extensions-from-env.patch + + # Required for pygobject_init (). + (substituteAll { + src = ./python-path.patch; + env = "${python3.pkgs.pygobject3}/${python3.sitePackages}"; + }) + ]; + + nativeBuildInputs = [ + meson + pkg-config + ninja + ]; + + buildInputs = [ + glib + gtk3 + nemo + python3 + python3.pkgs.pygobject3 + ]; + + postPatch = '' + # Tries to load libpython3.so via g_module_open (). + substituteInPlace meson.build \ + --replace "get_option('prefix'), get_option('libdir')" "'${python3}/lib'" + ''; + + PKG_CONFIG_LIBNEMO_EXTENSION_EXTENSIONDIR = "${placeholder "out"}/${nemo.extensiondir}"; + + meta = with lib; { + homepage = "https://github.com/linuxmint/nemo-extensions/tree/master/nemo-python"; + description = "Python bindings for the Nemo extension library"; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = teams.cinnamon.members; + }; +} diff --git a/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch b/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch new file mode 100644 index 0000000000000..ad9a4abdc387f --- /dev/null +++ b/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch @@ -0,0 +1,27 @@ +diff --git a/src/nemo-python.c b/src/nemo-python.c +index 8d2acdb..900811b 100644 +--- a/src/nemo-python.c ++++ b/src/nemo-python.c +@@ -255,6 +255,7 @@ nemo_module_initialize(GTypeModule *module) + { + gchar *user_extensions_dir; + const gchar *env_string; ++ const gchar *python_extensiondir; + + env_string = g_getenv("NEMO_PYTHON_DEBUG"); + if (env_string != NULL) +@@ -269,8 +270,12 @@ nemo_module_initialize(GTypeModule *module) + + all_types = g_array_new(FALSE, FALSE, sizeof(GType)); + +- // Look in the new global path, $DATADIR/nemo-python/extensions +- nemo_python_load_dir(module, PYTHON_EXTENSION_DIR); ++ // Look in NEMO_PYTHON_EXTENSION_DIR ++ python_extensiondir = g_getenv("NEMO_PYTHON_EXTENSION_DIR"); ++ if (python_extensiondir == NULL) { ++ python_extensiondir = PYTHON_EXTENSION_DIR; ++ } ++ nemo_python_load_dir(module, python_extensiondir); + + // Look in XDG_DATA_DIR, ~/.local/share/nemo-python/extensions + user_extensions_dir = g_build_filename(g_get_user_data_dir(), diff --git a/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch b/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch new file mode 100644 index 0000000000000..bf6db93385c8a --- /dev/null +++ b/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch @@ -0,0 +1,13 @@ +diff --git a/src/nemo-python.c b/src/nemo-python.c +index 8d2acdb..ee24143 100644 +--- a/src/nemo-python.c ++++ b/src/nemo-python.c +@@ -197,7 +197,7 @@ nemo_python_init_python (void) + } + + debug("Sanitize the python search path"); +- PyRun_SimpleString("import sys; sys.path = [path for path in sys.path if path]"); ++ PyRun_SimpleString("import sys; sys.path = [path for path in sys.path if path]; sys.path.append('@env@')"); + if (PyErr_Occurred()) + { + PyErr_Print(); diff --git a/pkgs/desktops/cinnamon/nemo/default.nix b/pkgs/desktops/cinnamon/nemo/default.nix index 6af812141d3f4..ef5762cd14174 100644 --- a/pkgs/desktops/cinnamon/nemo/default.nix +++ b/pkgs/desktops/cinnamon/nemo/default.nix @@ -25,8 +25,6 @@ stdenv.mkDerivation rec { pname = "nemo"; version = "5.6.1"; - # TODO: add plugins support (see https://github.com/NixOS/nixpkgs/issues/78327) - src = fetchFromGitHub { owner = "linuxmint"; repo = pname; @@ -35,6 +33,10 @@ stdenv.mkDerivation rec { }; patches = [ + # Load extensions from NEMO_EXTENSION_DIR environment variable + # https://github.com/NixOS/nixpkgs/issues/78327 + ./load-extensions-from-env.patch + # Don't populate nemo actions from /run/current-system/sw/share # They should only be loaded exactly once from $out/share # https://github.com/NixOS/nixpkgs/issues/190781 @@ -70,12 +72,16 @@ stdenv.mkDerivation rec { "--localedir=${cinnamon-translations}/share/locale" ]; + # Taken from libnemo-extension.pc. + passthru.extensiondir = "lib/nemo/extensions-3.0"; + meta = with lib; { homepage = "https://github.com/linuxmint/nemo"; description = "File browser for Cinnamon"; license = [ licenses.gpl2 licenses.lgpl2 ]; platforms = platforms.linux; maintainers = teams.cinnamon.members; + mainProgram = "nemo"; }; } diff --git a/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch b/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch new file mode 100644 index 0000000000000..610b3490cac31 --- /dev/null +++ b/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch @@ -0,0 +1,40 @@ +diff --git a/libnemo-private/nemo-module.c b/libnemo-private/nemo-module.c +index 92bcff5..ecadcd8 100644 +--- a/libnemo-private/nemo-module.c ++++ b/libnemo-private/nemo-module.c +@@ -209,11 +209,16 @@ void + nemo_module_setup (void) + { + static gboolean initialized = FALSE; ++ const gchar *extensiondir = NULL; + + if (!initialized) { + initialized = TRUE; + +- load_module_dir (NEMO_EXTENSIONDIR); ++ extensiondir = g_getenv ("NEMO_EXTENSION_DIR"); ++ if (extensiondir == NULL) { ++ extensiondir = NEMO_EXTENSIONDIR; ++ } ++ load_module_dir (extensiondir); + + eel_debug_call_at_shutdown (free_module_objects); + } +diff --git a/src/nemo-extensions-list.c b/src/nemo-extensions-list.c +index 944fc5f..983c396 100644 +--- a/src/nemo-extensions-list.c ++++ b/src/nemo-extensions-list.c +@@ -129,7 +129,12 @@ module_get_extensions_for_type (GType type) + int + main (int argc, char *argv[]) + { +- populate_from_directory (NEMO_EXTENSIONDIR); ++ const gchar *extensiondir = NULL; ++ extensiondir = g_getenv ("NEMO_EXTENSION_DIR"); ++ if (extensiondir == NULL) { ++ extensiondir = NEMO_EXTENSIONDIR; ++ } ++ populate_from_directory (extensiondir); + + GList *nd_providers; + GList *l; diff --git a/pkgs/desktops/cinnamon/nemo/wrapper.nix b/pkgs/desktops/cinnamon/nemo/wrapper.nix new file mode 100644 index 0000000000000..7f7633d19a855 --- /dev/null +++ b/pkgs/desktops/cinnamon/nemo/wrapper.nix @@ -0,0 +1,38 @@ +{ symlinkJoin +, lib +, makeWrapper +, nemo +, nemoExtensions +, extensions ? [ ] +, useDefaultExtensions ? true +}: + +let + selectedExtensions = extensions ++ (lib.optionals useDefaultExtensions nemoExtensions); +in +symlinkJoin { + name = "nemo-with-extensions-${nemo.version}"; + + paths = [ nemo ] ++ selectedExtensions; + + nativeBuildInputs = [ makeWrapper ]; + + postBuild = '' + for f in $(find $out/bin/ $out/libexec/ -type l -not -path "*/.*"); do + wrapProgram "$f" \ + --set "NEMO_EXTENSION_DIR" "$out/${nemo.extensiondir}" \ + --set "NEMO_PYTHON_EXTENSION_DIR" "$out/share/nemo-python/extensions" + done + + # Point to wrapped binary in all service files + for file in "share/dbus-1/services/nemo.FileManager1.service" \ + "share/dbus-1/services/nemo.service" + do + rm "$out/$file" + substitute "${nemo}/$file" "$out/$file" \ + --replace "${nemo}" "$out" + done + ''; + + inherit (nemo) meta; +} diff --git a/pkgs/desktops/gnome/apps/cheese/default.nix b/pkgs/desktops/gnome/apps/cheese/default.nix index 4001e358e8516..68d94abb33b63 100644 --- a/pkgs/desktops/gnome/apps/cheese/default.nix +++ b/pkgs/desktops/gnome/apps/cheese/default.nix @@ -34,13 +34,13 @@ stdenv.mkDerivation rec { pname = "cheese"; - version = "43.alpha"; + version = "43.0"; outputs = [ "out" "man" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/cheese/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "utrp972m+lch2regi4I3p15TJcDJpmlJj/VPdyFG5M8="; + sha256 = "dFdMSjwycyfxotbQs/k3vir7B6YVm21425wZLeZmfws="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/gnome/core/evolution-data-server/default.nix b/pkgs/desktops/gnome/core/evolution-data-server/default.nix index 3b0a5caa59f6d..bdde8160ca503 100644 --- a/pkgs/desktops/gnome/core/evolution-data-server/default.nix +++ b/pkgs/desktops/gnome/core/evolution-data-server/default.nix @@ -45,6 +45,7 @@ , boost , protobuf , libiconv +, makeHardcodeGsettingsPatch }: stdenv.mkDerivation rec { @@ -150,8 +151,8 @@ stdenv.mkDerivation rec { ''; passthru = { - hardcodeGsettingsPatch = glib.mkHardcodeGsettingsPatch { - glib-schema-to-var = { + hardcodeGsettingsPatch = makeHardcodeGsettingsPatch { + schemaIdToVariableMapping = { "org.gnome.Evolution.DefaultSources" = "EDS"; "org.gnome.evolution.shell.network-config" = "EDS"; "org.gnome.evolution-data-server.addressbook" = "EDS"; diff --git a/pkgs/desktops/pantheon/apps/elementary-files/default.nix b/pkgs/desktops/pantheon/apps/elementary-files/default.nix index bc91455fe389d..7d3d09d28ce12 100644 --- a/pkgs/desktops/pantheon/apps/elementary-files/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-files/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , nix-update-script , pkg-config , meson @@ -39,6 +40,15 @@ stdenv.mkDerivation rec { sha256 = "sha256-pJFeMG2aGaMkS00fSoRlMR2YSg5YzwqwaQT8G7Gk5S4="; }; + patches = [ + # Ensure special user directory icon used for bookmark + # https://github.com/elementary/files/pull/2106 + (fetchpatch { + url = "https://github.com/elementary/files/commit/00b1c2a975aeab378ed6eb1d90c8988f82596add.patch"; + sha256 = "sha256-F/Vk7dg57uBBMO4WOJ/7kKbRNMZuWZ3QfrBfEIBozbw="; + }) + ]; + nativeBuildInputs = [ desktop-file-utils meson diff --git a/pkgs/desktops/pantheon/desktop/gala/default.nix b/pkgs/desktops/pantheon/desktop/gala/default.nix index 6c7713098822b..d182a4d9c36da 100644 --- a/pkgs/desktops/pantheon/desktop/gala/default.nix +++ b/pkgs/desktops/pantheon/desktop/gala/default.nix @@ -60,6 +60,49 @@ stdenv.mkDerivation rec { url = "https://github.com/elementary/gala/commit/23c7edeb0ee9b0ff0aa48c1d19fbd1739df7af78.patch"; sha256 = "sha256-OfIDBfVEZoY8vMu9F8gtfRg4TYA1MUAG94BSOBKVGcI="; }) + + # Work around crash when receiving notifications + # https://github.com/elementary/gala/pull/1497 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/8842e576e3e8643a018d506605f80d152e3f5cec.patch"; + sha256 = "sha256-xu9Rh7TH0ccRU1TInTNTm+dDaCXj5aaEwDw3rBW02q8="; + }) + + # ShadowEffect: let Clutter know the shadow's size + # https://github.com/elementary/gala/pull/1500 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/34a208e26d2ee0bf4a1689c8ad6ddfc06c540ff8.patch"; + sha256 = "sha256-KPIXNWTlKGc3JImt82t5lmcMu0bqrPx1JNv+TbsxhOg="; + }) + + # Fix awkward two-finger scroll in multitasking view + # https://github.com/elementary/gala/pull/1499 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/c175d2662dd05e940a5b3311cc9dc285242b7fc5.patch"; + sha256 = "sha256-xsxYDagPmaNSZO/Cj7NjPqBHCc1hrqvpboAvPIg9P58="; + }) + + # Fix crash when monitor is turned off + # https://github.com/elementary/gala/pull/1491 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/1487660812a343e6a6178881e6e7b25c2405cece.patch"; + sha256 = "sha256-YsRaWmDSg0h0RFTUOoMxlNcKoA4MNa8AhW1GGmk8qLA="; + }) + + # Fix quick zooming (next 3 patches) + # https://github.com/elementary/gala/pull/1501 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/b9c5c9c79a045c3eef7695f74f82d851438ba7e2.patch"; + sha256 = "sha256-PGjf/B/7UQxpW0Pby7ZXuMoDlamZwEaDvaN9PaRulHU="; + }) + (fetchpatch { + url = "https://github.com/elementary/gala/commit/49d3ddae5b631027466ff528c2935e05a8f5dc3f.patch"; + sha256 = "sha256-hvm2GcqiMYYxOLpQFXdyz325jZme7W+VYipu5goKoiU="; + }) + (fetchpatch { + url = "https://github.com/elementary/gala/commit/45126e4c2d3736e872c05941a2047a54788cd011.patch"; + sha256 = "sha256-LdhFFFNwvF1p1LqJXer8+DOgAptiHZHlfnQBwVEIZjo="; + }) ]; nativeBuildInputs = [ diff --git a/pkgs/desktops/plasma-5/plasma-mobile/default.nix b/pkgs/desktops/plasma-5/plasma-mobile/default.nix index ce0da404bb595..22ea8bf782521 100644 --- a/pkgs/desktops/plasma-5/plasma-mobile/default.nix +++ b/pkgs/desktops/plasma-5/plasma-mobile/default.nix @@ -16,6 +16,7 @@ , kconfig , krunner , kinit +, kirigami-addons , kwayland , kwin , plasma-framework @@ -50,6 +51,7 @@ mkDerivation { kconfig krunner kinit + kirigami-addons kwayland kwin plasma-framework diff --git a/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix b/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix index 8a376862d9c9e..2d3d9c5d4e011 100644 --- a/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix @@ -12,9 +12,9 @@ mkXfceDerivation { category = "apps"; pname = "xfce4-notifyd"; - version = "0.6.4"; + version = "0.6.5"; - sha256 = "sha256-H/qAfgwM0qaIxpVlSAUJJ4/Z3WtvYxJb2TtjKHK6AjE="; + sha256 = "sha256-NUEqQk9EcDl23twbo+DUt7QYZrPmWpsRzmi5wIdolqw="; buildInputs = [ gtk3 diff --git a/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix b/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix index ace9f16e42615..9bbc524eab0f4 100644 --- a/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix @@ -1,14 +1,14 @@ -{ lib, mkXfceDerivation, exo, gtk3, libwnck, libXmu }: +{ lib, mkXfceDerivation, exo, gtk3, libxfce4ui, xfconf, libwnck, libXmu }: mkXfceDerivation { category = "apps"; pname = "xfce4-taskmanager"; - version = "1.4.2"; + version = "1.5.5"; - sha256 = "sha256-jcICXPtG/7t0U0xqgvU52mjiA8wsyw7JQ0OmNjwA89A="; + sha256 = "sha256-worHYB9qibRxMaCYQ0+nHA9CSTColewgahyrXiPOnQA="; nativeBuildInputs = [ exo ]; - buildInputs = [ gtk3 libwnck libXmu ]; + buildInputs = [ gtk3 libxfce4ui xfconf libwnck libXmu ]; meta = with lib; { description = "Easy to use task manager for Xfce"; diff --git a/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix b/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix index 1a63a62510c98..99c8741851fa0 100644 --- a/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix @@ -11,6 +11,8 @@ mkXfceDerivation { buildInputs = [ gtk3 libxfce4ui vte xfconf pcre2 ]; + NIX_CFLAGS_COMPILE = "-I${libxfce4ui.dev}/include/xfce4"; + passthru.tests.test = nixosTests.terminal-emulators.xfce4-terminal; meta = with lib; { diff --git a/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix b/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix index 131181031847c..3820cae101a8d 100644 --- a/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix @@ -7,6 +7,12 @@ mkXfceDerivation { sha256 = "sha256-EgmTk19p9OBmz3rWQB0LoPhhoDm4u1V6/vvgitOzUuc="; + # https://gitlab.xfce.org/apps/xfce4-volumed-pulse/-/merge_requests/3 + postPatch = '' + substituteInPlace configure.ac.in \ + --replace "2.16" "2.26" + ''; + buildInputs = [ gtk3 libnotify libpulseaudio keybinder3 xfconf ]; meta = with lib; { diff --git a/pkgs/desktops/xfce/core/exo/default.nix b/pkgs/desktops/xfce/core/exo/default.nix index 27a5041eac02a..bb8a846c50095 100644 --- a/pkgs/desktops/xfce/core/exo/default.nix +++ b/pkgs/desktops/xfce/core/exo/default.nix @@ -4,9 +4,9 @@ mkXfceDerivation { category = "xfce"; pname = "exo"; - version = "4.16.4"; + version = "4.18.0"; - sha256 = "sha256-/BKgQYmDaiptzlTTFqDm2aHykTCHm4MIvWnjxKYi6Es="; + sha256 = "sha256-oWlKeUD1v2qqb8vY+2Cu9VJ1iThFPVboP12m/ob5KSQ="; nativeBuildInputs = [ libxslt diff --git a/pkgs/desktops/xfce/core/garcon/default.nix b/pkgs/desktops/xfce/core/garcon/default.nix index 740022550ebbc..656ff4ba5e0b0 100644 --- a/pkgs/desktops/xfce/core/garcon/default.nix +++ b/pkgs/desktops/xfce/core/garcon/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "garcon"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-KimO6w82lkUBSzJbBMI3W8w1eXPARE1oVyJEUk6olow="; + sha256 = "sha256-l1wGitD8MM1GrR4FyyPIxHSqK+AqKKyjTIN7VOaVzpM="; nativeBuildInputs = [ gobject-introspection ]; diff --git a/pkgs/desktops/xfce/core/libxfce4ui/default.nix b/pkgs/desktops/xfce/core/libxfce4ui/default.nix index fc3535127fa29..e664ae7788272 100644 --- a/pkgs/desktops/xfce/core/libxfce4ui/default.nix +++ b/pkgs/desktops/xfce/core/libxfce4ui/default.nix @@ -4,9 +4,9 @@ mkXfceDerivation { category = "xfce"; pname = "libxfce4ui"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-5mwyC3YA1LvdVSvaHN7CXDJh+IXjmdHGLKzhpjtUZkw="; + sha256 = "sha256-AYjnIi9l3l4g+wqGrPhS2AEsYNJwK1KMofCeyEz+VHs="; nativeBuildInputs = [ gobject-introspection vala ]; buildInputs = [ gtk3 libstartup_notification libgtop libepoxy xfconf ]; diff --git a/pkgs/desktops/xfce/core/libxfce4util/default.nix b/pkgs/desktops/xfce/core/libxfce4util/default.nix index 4262a03930352..a2bdee37eb695 100644 --- a/pkgs/desktops/xfce/core/libxfce4util/default.nix +++ b/pkgs/desktops/xfce/core/libxfce4util/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "libxfce4util"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-q2vH4k1OiergjITOaA9+m92C3Q/sbPoKVrAFxG60Gtw="; + sha256 = "sha256-m4O/vTFqzkF6rzyGVw8xdwcX7S/SyOSJo8aCZjniXAw="; nativeBuildInputs = [ gobject-introspection vala ]; diff --git a/pkgs/desktops/xfce/core/thunar-volman/default.nix b/pkgs/desktops/xfce/core/thunar-volman/default.nix index 3fe2df6f1b62d..33b34e5beee8d 100644 --- a/pkgs/desktops/xfce/core/thunar-volman/default.nix +++ b/pkgs/desktops/xfce/core/thunar-volman/default.nix @@ -3,11 +3,11 @@ mkXfceDerivation { category = "xfce"; pname = "thunar-volman"; - version = "4.16.0"; + version = "4.18.0"; buildInputs = [ exo gtk3 libgudev libxfce4ui libxfce4util xfconf ]; - sha256 = "sha256-A9APQ5FLshb+MXQErCExegax6hqbHnlfI2hgtnWfVgA="; + sha256 = "sha256-NRVoakU8jTCJVe+iyJQwW1xPti2vjd/8n8CYrIYGII0="; odd-unstable = false; diff --git a/pkgs/desktops/xfce/core/thunar/default.nix b/pkgs/desktops/xfce/core/thunar/default.nix index dd8e8f9809480..2a6878fbf76d2 100644 --- a/pkgs/desktops/xfce/core/thunar/default.nix +++ b/pkgs/desktops/xfce/core/thunar/default.nix @@ -21,9 +21,9 @@ let unwrapped = mkXfceDerivation { category = "xfce"; pname = "thunar"; - version = "4.16.11"; + version = "4.18.0"; - sha256 = "sha256-xan0HuHYLVArx3dGzzxsCjQ8eWsXNk0LtZGAejA2iGI="; + sha256 = "sha256-vsc5vEdyYEtpKktBiIRayZl7MjHrxKzL7iwzvBCAqG0="; nativeBuildInputs = [ docbook_xsl @@ -44,9 +44,9 @@ let unwrapped = mkXfceDerivation { xfconf ]; - patches = [ - ./thunarx_plugins_directory.patch - ]; + configureFlags = [ "--with-custom-thunarx-dirs-enabled" ]; + + NIX_CFLAGS_COMPILE = "-I${libxfce4ui.dev}/include/xfce4"; # the desktop file … is in an insecure location» # which pops up when invoking desktop files that are diff --git a/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch b/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch deleted file mode 100644 index 594a81c829efa..0000000000000 --- a/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch +++ /dev/null @@ -1,48 +0,0 @@ -diff --git a/thunarx/thunarx-provider-factory.c b/thunarx/thunarx-provider-factory.c -index 94b11545..1f66c982 100644 ---- a/thunarx/thunarx-provider-factory.c -+++ b/thunarx/thunarx-provider-factory.c -@@ -150,12 +150,19 @@ static GList* - thunarx_provider_factory_load_modules (ThunarxProviderFactory *factory) - { - ThunarxProviderModule *module; -+ const gchar *thunar_dir; - const gchar *name; - GList *modules = NULL; - GList *lp; - GDir *dp; - -- dp = g_dir_open (THUNARX_DIRECTORY, 0, NULL); -+ thunar_dir = g_getenv("THUNARX_MODULE_DIR"); -+ if (NULL == thunar_dir) -+ { -+ thunar_dir = THUNARX_DIRECTORY; -+ } -+ -+ dp = g_dir_open (thunar_dir, 0, NULL); - if (G_LIKELY (dp != NULL)) - { - /* determine the types for all existing plugins */ -diff --git a/thunarx/thunarx-provider-module.c b/thunarx/thunarx-provider-module.c -index 023ad2ae..b1d1be8f 100644 ---- a/thunarx/thunarx-provider-module.c -+++ b/thunarx/thunarx-provider-module.c -@@ -174,10 +174,17 @@ static gboolean - thunarx_provider_module_load (GTypeModule *type_module) - { - ThunarxProviderModule *module = THUNARX_PROVIDER_MODULE (type_module); -+ const gchar *thunar_dir; - gchar *path; - -+ thunar_dir = g_getenv("THUNARX_MODULE_DIR"); -+ if (NULL == thunar_dir) -+ { -+ thunar_dir = THUNARX_DIRECTORY; -+ } -+ - /* load the module using the runtime link editor */ -- path = g_build_filename (THUNARX_DIRECTORY, type_module->name, NULL); -+ path = g_build_filename (thunar_dir, type_module->name, NULL); - module->library = g_module_open (path, G_MODULE_BIND_LAZY | G_MODULE_BIND_LOCAL); - g_free (path); - diff --git a/pkgs/desktops/xfce/core/thunar/wrapper.nix b/pkgs/desktops/xfce/core/thunar/wrapper.nix index 584c356547b38..43531f2012329 100644 --- a/pkgs/desktops/xfce/core/thunar/wrapper.nix +++ b/pkgs/desktops/xfce/core/thunar/wrapper.nix @@ -9,10 +9,10 @@ symlinkJoin { postBuild = '' wrapProgram "$out/bin/thunar" \ - --set "THUNARX_MODULE_DIR" "$out/lib/thunarx-3" + --set "THUNARX_DIRS" "$out/lib/thunarx-3" wrapProgram "$out/bin/thunar-settings" \ - --set "THUNARX_MODULE_DIR" "$out/lib/thunarx-3" + --set "THUNARX_DIRS" "$out/lib/thunarx-3" # NOTE: we need to remove the folder symlink itself and create # a new folder before trying to substitute any file below. diff --git a/pkgs/desktops/xfce/core/tumbler/default.nix b/pkgs/desktops/xfce/core/tumbler/default.nix index ee5413fdda5a1..9d47d1ec7a35f 100644 --- a/pkgs/desktops/xfce/core/tumbler/default.nix +++ b/pkgs/desktops/xfce/core/tumbler/default.nix @@ -7,6 +7,7 @@ , libgsf , poppler , gst_all_1 +, libxfce4util }: # TODO: add libopenraw @@ -14,11 +15,12 @@ mkXfceDerivation { category = "xfce"; pname = "tumbler"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-f2pCItNHTB0ggovIddpwNWEhaohfxD2otN8x9VfwR4k="; + sha256 = "sha256-qxbS0PMhwVk2I3fbblJEeIuI72xSWVsQx5SslhOvg+c="; buildInputs = [ + libxfce4util ffmpegthumbnailer freetype gdk-pixbuf diff --git a/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix b/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix index d98353a070afb..b479a574d97b9 100644 --- a/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-appfinder"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-Xr8iiCDQYmxiLR2+TeuJggV1dLM/U4b7u7kpvFWT+uQ="; + sha256 = "sha256-/VYZpWk08OQPZ/DQ5SqSL4F4KDdh+IieQBDOZUxZvtw="; nativeBuildInputs = [ exo ]; buildInputs = [ garcon gtk3 libxfce4ui libxfce4util xfconf ]; diff --git a/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix b/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix index 16c35e6002bfe..25b3e6f805990 100644 --- a/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix @@ -14,9 +14,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-dev-tools"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-5r9dJfCgXosXoOAtNg1kaPWgFEAmyw/pWTtdG+K1h3A="; + sha256 = "sha256-VgQiTRMPD1VeUkUnFkX78C2VrsrXFWCdmupL8PQc7+c="; nativeBuildInputs = [ autoreconfHook diff --git a/pkgs/desktops/xfce/core/xfce4-panel/default.nix b/pkgs/desktops/xfce/core/xfce4-panel/default.nix index fed25720e3364..d76523a94c3cd 100644 --- a/pkgs/desktops/xfce/core/xfce4-panel/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-panel/default.nix @@ -17,9 +17,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-panel"; - version = "4.16.5"; + version = "4.18.0"; - sha256 = "sha256-RK4sEir8CvB1aa2dZWJftA+2n4YPUEkhF9afOfOTA0Y="; + sha256 = "sha256-CnZk0Ca3IG6nmiwe7eIvPqpzJgRZHIyqeoTA5cPpU7s="; nativeBuildInputs = [ gobject-introspection diff --git a/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix b/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix index 107357d5a7318..d14752fbab469 100644 --- a/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix @@ -4,9 +4,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-power-manager"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-Qk++1db+agiU99p+QW8/WNnNqFVejV/BcnmgvfoB3OU="; + sha256 = "sha256-vl0SfZyVGxZYnSa2nCnYlqT05Hm7PLzOxgAGzapkKVI="; nativeBuildInputs = [ automakeAddFlags exo ]; buildInputs = [ gtk3 libnotify libxfce4ui libxfce4util upower xfconf xfce4-panel ]; diff --git a/pkgs/desktops/xfce/core/xfce4-session/default.nix b/pkgs/desktops/xfce/core/xfce4-session/default.nix index 5ce96c1b02b6a..f8dc8b92da302 100644 --- a/pkgs/desktops/xfce/core/xfce4-session/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-session/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-session"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-LIRAQ1YAkAHwIzC5NYV/0iFLkAP5V96wuTIrYTGbGy0="; + sha256 = "sha256-eSQXVMdwxr/yE806Tly8CLimmJso6k4muuTR7RHPU3U="; buildInputs = [ exo gtk3 glib libxfce4ui libxfce4util libwnck xfconf polkit iceauth ]; diff --git a/pkgs/desktops/xfce/core/xfce4-settings/default.nix b/pkgs/desktops/xfce/core/xfce4-settings/default.nix index bf003fca5a475..6e0990e9098dd 100644 --- a/pkgs/desktops/xfce/core/xfce4-settings/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-settings/default.nix @@ -5,9 +5,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-settings"; - version = "4.16.5"; + version = "4.18.0"; - sha256 = "sha256-ZVQw/oqN+jCOWj8O+1ldVCvbzY+QcebaQI5oFOdMOew="; + sha256 = "sha256-T0sPcsyGqa0hEXIb/mhxb29OnuLmHey6Tt/iB4nQvoM="; postPatch = '' for f in xfsettingsd/pointers.c dialogs/mouse-settings/main.c; do diff --git a/pkgs/desktops/xfce/core/xfconf/default.nix b/pkgs/desktops/xfce/core/xfconf/default.nix index c3946258292bd..18bc54436b4a5 100644 --- a/pkgs/desktops/xfce/core/xfconf/default.nix +++ b/pkgs/desktops/xfce/core/xfconf/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfconf"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-w8wnHFj1KBX6lCnGbVLgWPEo2ul4SwfemUYVHioTlwE="; + sha256 = "sha256-8zl2EWV1DRHsH0QUNa13OKvfIVDVOhIO0FCMbU978Js="; nativeBuildInputs = [ gobject-introspection vala ]; diff --git a/pkgs/desktops/xfce/core/xfdesktop/default.nix b/pkgs/desktops/xfce/core/xfdesktop/default.nix index bc3c714eb0a44..7d67741657992 100644 --- a/pkgs/desktops/xfce/core/xfdesktop/default.nix +++ b/pkgs/desktops/xfce/core/xfdesktop/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfdesktop"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-JecuD0DJASHaxL6gwmL3hcmAEA7sVIyaM0ushrdq4/Y="; + sha256 = "sha256-HZVu5UVLKDCWaUpw1SV8E0JLGRG946w4QLlA51rg/Bo="; buildInputs = [ exo diff --git a/pkgs/desktops/xfce/core/xfwm4/default.nix b/pkgs/desktops/xfce/core/xfwm4/default.nix index efc12dd91eb96..abd08f5a6f3d3 100644 --- a/pkgs/desktops/xfce/core/xfwm4/default.nix +++ b/pkgs/desktops/xfce/core/xfwm4/default.nix @@ -5,9 +5,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfwm4"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-CwRJk+fqu3iC4Vb6fKGOIZZk2hxTqYF3sNvm6WKqHdI="; + sha256 = "sha256-nTPgxC0XMBJ48lPCeQgCvWWK1/2ZIoQOYsMeaxDpE1c="; nativeBuildInputs = [ exo librsvg ]; diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix index fb070ed3652dc..bba028bfe5368 100644 --- a/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix +++ b/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix @@ -3,8 +3,8 @@ mkXfceDerivation { category = "panel-plugins"; pname = "xfce4-cpufreq-plugin"; - version = "1.2.7"; - sha256 = "sha256-M+BehEYcHZlnuYwBlI7F0aPxPGwExTL5I9Jf6W5ugOY="; + version = "1.2.8"; + sha256 = "sha256-wEVv3zBS9PRLOMusFPzTnffVDvTaBnTCyGjstJRQRCo="; buildInputs = [ gtk3 libxfce4ui libxfce4util xfce4-panel xfconf ]; diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix index 8a2cd770944ba..ad0110a564292 100644 --- a/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix +++ b/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix @@ -13,10 +13,10 @@ mkXfceDerivation rec { category = "panel-plugins"; pname = "xfce4-cpugraph-plugin"; - version = "1.2.6"; + version = "1.2.7"; rev-prefix = "xfce4-cpugraph-plugin-"; odd-unstable = false; - sha256 = "sha256-Elm10ZGN93R+1XZ4vJJZZIJ6OcaHpsrH0nQRMMuFnLY="; + sha256 = "sha256-IgxljHJAg9Bp/OFFZiQ6QwE5vtAtQ0WmYHs78NVsmCw="; buildInputs = [ exo diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix index 2e82deb2d3f18..fbc40f1902553 100644 --- a/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix +++ b/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix @@ -8,11 +8,11 @@ in stdenv.mkDerivation rec { pname = "xfce4-sensors-plugin"; - version = "1.4.3"; + version = "1.4.4"; src = fetchurl { url = "mirror://xfce/src/${category}/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-FxwCNfcMZfD/7lh+lg2dp5soSFXfIhMCOerCYnLsBsk="; + sha256 = "sha256-bBYFpzjl30DghNCKyT+WLNRFCTOW3h6b+tx6tFiMNrY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/beam-modules/default.nix b/pkgs/development/beam-modules/default.nix index 068e1da33133c..86f7d94eed1bd 100644 --- a/pkgs/development/beam-modules/default.nix +++ b/pkgs/development/beam-modules/default.nix @@ -1,6 +1,7 @@ -{ lib, pkgs, erlang }: +{ lib, __splicedPackages, erlang }: let + pkgs = __splicedPackages; inherit (lib) makeExtensible; lib' = pkgs.callPackage ./lib.nix { }; diff --git a/pkgs/development/beam-modules/lib.nix b/pkgs/development/beam-modules/lib.nix index 1b021cf934722..2d93b28cda6ba 100644 --- a/pkgs/development/beam-modules/lib.nix +++ b/pkgs/development/beam-modules/lib.nix @@ -1,5 +1,8 @@ -{ pkgs, lib }: +{ __splicedPackages, lib }: +let + pkgs = __splicedPackages; +in rec { /* Similar to callPackageWith/callPackage, but without makeOverridable diff --git a/pkgs/development/compilers/carp/default.nix b/pkgs/development/compilers/carp/default.nix index 209fc6aed6111..1c7408f3a176f 100644 --- a/pkgs/development/compilers/carp/default.nix +++ b/pkgs/development/compilers/carp/default.nix @@ -50,4 +50,7 @@ haskellPackages.mkDerivation rec { # Windows not (yet) supported. platforms = with lib.platforms; unix ++ darwin; + # doesn't build on ghc92 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/pkgs/development/compilers/dotnet/build-dotnet.nix b/pkgs/development/compilers/dotnet/build-dotnet.nix index e25a8a1464fee..c51eca24b58c5 100644 --- a/pkgs/development/compilers/dotnet/build-dotnet.nix +++ b/pkgs/development/compilers/dotnet/build-dotnet.nix @@ -24,6 +24,7 @@ assert if type == "sdk" then packages != null else true; , testers , runCommand , writeShellScript +, mkNugetDeps }: let @@ -40,6 +41,12 @@ let runtime = ".NET Runtime ${version}"; sdk = ".NET SDK ${version}"; }; + + packageDeps = mkNugetDeps { + name = "${pname}-${version}-deps"; + nugetDeps = packages; + }; + in stdenv.mkDerivation (finalAttrs: rec { inherit pname version; @@ -120,14 +127,8 @@ stdenv.mkDerivation (finalAttrs: rec { ''; passthru = rec { - inherit icu packages; - - runtimeIdentifierMap = { - "x86_64-linux" = "linux-x64"; - "aarch64-linux" = "linux-arm64"; - "x86_64-darwin" = "osx-x64"; - "aarch64-darwin" = "osx-arm64"; - }; + inherit icu; + packages = packageDeps; updateScript = if type == "sdk" then @@ -141,9 +142,6 @@ stdenv.mkDerivation (finalAttrs: rec { exec ${./update.sh} "${majorVersion}" '' else null; - # Convert a "stdenv.hostPlatform.system" to a dotnet RID - systemToDotnetRid = system: runtimeIdentifierMap.${system} or (throw "unsupported platform ${system}"); - tests = { version = testers.testVersion { package = finalAttrs.finalPackage; diff --git a/pkgs/development/compilers/dotnet/default.nix b/pkgs/development/compilers/dotnet/default.nix index 53c32121aabc0..c2cb6eb37823b 100644 --- a/pkgs/development/compilers/dotnet/default.nix +++ b/pkgs/development/compilers/dotnet/default.nix @@ -14,6 +14,18 @@ let buildNetSdk = attrs: buildDotnet (attrs // { type = "sdk"; }); }; + runtimeIdentifierMap = { + "x86_64-linux" = "linux-x64"; + "aarch64-linux" = "linux-arm64"; + "x86_64-darwin" = "osx-x64"; + "aarch64-darwin" = "osx-arm64"; + "x86_64-windows" = "win-x64"; + "i686-windows" = "win-x86"; + }; + + # Convert a "stdenv.hostPlatform.system" to a dotnet RID + systemToDotnetRid = system: runtimeIdentifierMap.${system} or (throw "unsupported platform ${system}"); + ## Files in versions/ are generated automatically by update.sh ## dotnet_3_1 = import ./versions/3.1.nix (buildAttrs // { icu = icu70; }); dotnet_5_0 = import ./versions/5.0.nix (buildAttrs // { inherit icu; }); @@ -21,6 +33,8 @@ let dotnet_7_0 = import ./versions/7.0.nix (buildAttrs // { inherit icu; }); in rec { + inherit systemToDotnetRid; + combinePackages = attrs: callPackage (import ./combine-packages.nix attrs) {}; # EOL diff --git a/pkgs/development/compilers/elm/default.nix b/pkgs/development/compilers/elm/default.nix index 080c5a8d77637..e5ccffc7e76ae 100644 --- a/pkgs/development/compilers/elm/default.nix +++ b/pkgs/development/compilers/elm/default.nix @@ -37,6 +37,7 @@ let */ elm-format = justStaticExecutables (overrideCabal (drv: { jailbreak = true; + doCheck = assert (drv.version == "0.8.5"); false; # golden tests fail with optparse-applicative 0.17 description = "Formats Elm source code according to a standard set of rules based on the official Elm Style Guide"; homepage = "https://github.com/avh4/elm-format"; @@ -96,6 +97,7 @@ let hspec = self.hspec_2_7_10; hspec-core = self.hspec-core_2_7_10; hspec-discover = self.hspec-discover_2_7_10; + hspec-meta = self.hspec-meta_2_7_8; elm-format-test-lib = self.callPackage ./packages/elm-format-test-lib.nix {}; elm-format-markdown = self.callPackage ./packages/elm-format-markdown.nix {}; diff --git a/pkgs/development/compilers/fstar/default.nix b/pkgs/development/compilers/fstar/default.nix index a269edd6668a5..e38f416b261be 100644 --- a/pkgs/development/compilers/fstar/default.nix +++ b/pkgs/development/compilers/fstar/default.nix @@ -1,14 +1,14 @@ -{ lib, stdenv, fetchFromGitHub, z3, ocamlPackages, makeWrapper, installShellFiles }: +{ lib, stdenv, writeScript, fetchFromGitHub, z3, ocamlPackages, makeWrapper, installShellFiles }: stdenv.mkDerivation rec { pname = "fstar"; - version = "2022.01.15"; + version = "2022.11.19"; src = fetchFromGitHub { owner = "FStarLang"; repo = "FStar"; rev = "v${version}"; - sha256 = "sha256-bK3McF/wTjT9q6luihPaEXjx7Lu6+ZbQ9G61Mc4KoB0="; + sha256 = "sha256-IJMzRi335RbK8mEXQaF1UDPC0JVi6zSqcz6RS874m3Q="; }; strictDeps = true; @@ -61,6 +61,15 @@ stdenv.mkDerivation rec { installShellCompletion --zsh --name _fstar.exe .completion/zsh/__fstar.exe ''; + passthru.updateScript = writeScript "update-fstar" '' + #!/usr/bin/env nix-shell + #!nix-shell -i bash -p git gnugrep common-updater-scripts + set -eu -o pipefail + + version="$(git ls-remote --tags git@github.com:FStarLang/FStar.git | grep -Po 'v\K\d{4}\.\d{2}\.\d{2}' | sort | tail -n1)" + update-source-version fstar "$version" + ''; + meta = with lib; { description = "ML-like functional programming language aimed at program verification"; homepage = "https://www.fstar-lang.org"; diff --git a/pkgs/development/compilers/ghc/9.2.4.nix b/pkgs/development/compilers/ghc/9.2.4.nix index cfbc403a38917..68657c9178a0c 100644 --- a/pkgs/development/compilers/ghc/9.2.4.nix +++ b/pkgs/development/compilers/ghc/9.2.4.nix @@ -194,6 +194,14 @@ stdenv.mkDerivation (rec { extraPrefix = "utils/haddock/"; stripLen = 1; }) + # Don't generate code that doesn't compile when --enable-relocatable is passed to Setup.hs + # Can be removed if the Cabal library included with ghc backports the linked fix + (fetchpatch { + url = "https://github.com/haskell/cabal/commit/6c796218c92f93c95e94d5ec2d077f6956f68e98.patch"; + stripLen = 1; + extraPrefix = "libraries/Cabal/"; + sha256 = "sha256-yRQ6YmMiwBwiYseC5BsrEtDgFbWvst+maGgDtdD0vAY="; + }) ]; postPatch = "patchShebangs ."; diff --git a/pkgs/development/compilers/ghc/9.2.5.nix b/pkgs/development/compilers/ghc/9.2.5.nix index b7798ad044aae..12511c7613913 100644 --- a/pkgs/development/compilers/ghc/9.2.5.nix +++ b/pkgs/development/compilers/ghc/9.2.5.nix @@ -194,6 +194,14 @@ stdenv.mkDerivation (rec { extraPrefix = "utils/haddock/"; stripLen = 1; }) + # Don't generate code that doesn't compile when --enable-relocatable is passed to Setup.hs + # Can be removed if the Cabal library included with ghc backports the linked fix + (fetchpatch { + url = "https://github.com/haskell/cabal/commit/6c796218c92f93c95e94d5ec2d077f6956f68e98.patch"; + stripLen = 1; + extraPrefix = "libraries/Cabal/"; + sha256 = "sha256-yRQ6YmMiwBwiYseC5BsrEtDgFbWvst+maGgDtdD0vAY="; + }) ]; postPatch = "patchShebangs ."; diff --git a/pkgs/development/compilers/inklecate/default.nix b/pkgs/development/compilers/inklecate/default.nix index 101c77a1c9655..58ec15b682531 100644 --- a/pkgs/development/compilers/inklecate/default.nix +++ b/pkgs/development/compilers/inklecate/default.nix @@ -21,7 +21,7 @@ buildDotnetModule rec { buildInputs = [ stdenv.cc.cc.lib ]; projectFile = "inklecate/inklecate.csproj"; - nugetDeps = if stdenv.isDarwin then ./deps-darwin.nix else ./deps-linux.nix; + nugetDeps = ./deps.nix; executables = [ "inklecate" ]; dotnet-runtime = dotnetCorePackages.runtime_3_1; diff --git a/pkgs/development/compilers/inklecate/deps-linux.nix b/pkgs/development/compilers/inklecate/deps-linux.nix deleted file mode 100644 index 9252dc6061841..0000000000000 --- a/pkgs/development/compilers/inklecate/deps-linux.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ fetchNuGet }: [ - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "3.1.10"; sha256 = 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(fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) (fetchNuGet { pname = "System.Reflection.Extensions"; version = "4.3.0"; sha256 = "02bly8bdc98gs22lqsfx9xicblszr2yan7v2mmw3g7hy6miq5hwq"; }) (fetchNuGet { pname = "System.Reflection.Primitives"; version = "4.3.0"; sha256 = "04xqa33bld78yv5r93a8n76shvc8wwcdgr1qvvjh959g3rc31276"; }) - (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) (fetchNuGet { pname = "System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "0sjqlzsryb0mg4y4xzf35xi523s4is4hz9q4qgdvlvgivl7qxn49"; }) - (fetchNuGet { pname = "System.Runtime.Extensions"; version = "4.3.0"; sha256 = "1ykp3dnhwvm48nap8q23893hagf665k0kn3cbgsqpwzbijdcgc60"; }) (fetchNuGet { pname = "System.Runtime"; version = "4.3.0"; sha256 = "066ixvgbf2c929kgknshcxqj6539ax7b9m570cp8n179cpfkapz7"; }) - (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "11q1y8hh5hrp5a3kw25cb6l00v5l5dvirkz8jr3sq00h1xgcgrxy"; }) + (fetchNuGet { pname = "System.Runtime.Extensions"; version = "4.3.0"; sha256 = "1ykp3dnhwvm48nap8q23893hagf665k0kn3cbgsqpwzbijdcgc60"; }) (fetchNuGet { pname = "System.Text.Encoding"; version = "4.3.0"; sha256 = "1f04lkir4iladpp51sdgmis9dj4y8v08cka0mbmsy0frc9a4gjqr"; }) + (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "11q1y8hh5hrp5a3kw25cb6l00v5l5dvirkz8jr3sq00h1xgcgrxy"; }) (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.3.0"; sha256 = "1bgq51k7fwld0njylfn7qc5fmwrk2137gdq7djqdsw347paa9c2l"; }) - (fetchNuGet { pname = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) (fetchNuGet { pname = "System.Threading"; version = "4.3.0"; sha256 = "0rw9wfamvhayp5zh3j7p1yfmx9b5khbf4q50d8k5rk993rskfd34"; }) + (fetchNuGet { pname = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) ] diff --git a/pkgs/development/compilers/llvm/10/llvm/default.nix b/pkgs/development/compilers/llvm/10/llvm/default.nix index 78b0adcaadfba..95eba5d7fb36e 100644 --- a/pkgs/development/compilers/llvm/10/llvm/default.nix +++ b/pkgs/development/compilers/llvm/10/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? true }: diff --git a/pkgs/development/compilers/llvm/11/llvm/default.nix b/pkgs/development/compilers/llvm/11/llvm/default.nix index 1623d06c7f7a9..2123efdf23519 100644 --- a/pkgs/development/compilers/llvm/11/llvm/default.nix +++ b/pkgs/development/compilers/llvm/11/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false # TODO should be on by default }: diff --git a/pkgs/development/compilers/llvm/12/llvm/default.nix b/pkgs/development/compilers/llvm/12/llvm/default.nix index d330b73875955..b04eeb3c72693 100644 --- a/pkgs/development/compilers/llvm/12/llvm/default.nix +++ b/pkgs/development/compilers/llvm/12/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/pkgs/development/compilers/llvm/13/llvm/default.nix b/pkgs/development/compilers/llvm/13/llvm/default.nix index 5b8ec69853f21..0cdc79a4a57e9 100644 --- a/pkgs/development/compilers/llvm/13/llvm/default.nix +++ b/pkgs/development/compilers/llvm/13/llvm/default.nix @@ -17,10 +17,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/pkgs/development/compilers/llvm/14/llvm/default.nix b/pkgs/development/compilers/llvm/14/llvm/default.nix index 673cd31460e83..1134f0a6ab123 100644 --- a/pkgs/development/compilers/llvm/14/llvm/default.nix +++ b/pkgs/development/compilers/llvm/14/llvm/default.nix @@ -18,10 +18,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false } @args: diff --git a/pkgs/development/compilers/llvm/7/llvm/default.nix b/pkgs/development/compilers/llvm/7/llvm/default.nix index 1aa85f543ea26..da72bb8b35ae3 100644 --- a/pkgs/development/compilers/llvm/7/llvm/default.nix +++ b/pkgs/development/compilers/llvm/7/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder - ) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/pkgs/development/compilers/llvm/8/llvm/default.nix b/pkgs/development/compilers/llvm/8/llvm/default.nix index 3e01c7ac9ca11..5c381a896e152 100644 --- a/pkgs/development/compilers/llvm/8/llvm/default.nix +++ b/pkgs/development/compilers/llvm/8/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/pkgs/development/compilers/llvm/9/llvm/default.nix b/pkgs/development/compilers/llvm/9/llvm/default.nix index 6c0a37cadd900..f8b6a8170f85a 100644 --- a/pkgs/development/compilers/llvm/9/llvm/default.nix +++ b/pkgs/development/compilers/llvm/9/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/pkgs/development/coq-modules/Cheerios/default.nix b/pkgs/development/coq-modules/Cheerios/default.nix index d7763d87c9e67..5c79969c756c4 100644 --- a/pkgs/development/coq-modules/Cheerios/default.nix +++ b/pkgs/development/coq-modules/Cheerios/default.nix @@ -9,5 +9,9 @@ with lib; mkCoqDerivation { release."20200201".sha256 = "1h55s6lk47bk0lv5ralh81z55h799jbl9mhizmqwqzy57y8wqgs1"; propagatedBuildInputs = [ StructTact ]; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/pkgs/development/coq-modules/InfSeqExt/default.nix b/pkgs/development/coq-modules/InfSeqExt/default.nix index 1f11ae8e84a26..7f21386c86f69 100644 --- a/pkgs/development/coq-modules/InfSeqExt/default.nix +++ b/pkgs/development/coq-modules/InfSeqExt/default.nix @@ -7,5 +7,9 @@ mkCoqDerivation { defaultVersion = if lib.versions.isGe "8.5" coq.version then "20200131" else null; release."20200131".rev = "203d4c20211d6b17741f1fdca46dbc091f5e961a"; release."20200131".sha256 = "0xylkdmb2dqnnqinf3pigz4mf4zmczcbpjnn59g5g76m7f2cqxl0"; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/pkgs/development/coq-modules/StructTact/default.nix b/pkgs/development/coq-modules/StructTact/default.nix index 6618e75bab802..3fb8a42cfb56c 100644 --- a/pkgs/development/coq-modules/StructTact/default.nix +++ b/pkgs/development/coq-modules/StructTact/default.nix @@ -12,5 +12,9 @@ with lib; mkCoqDerivation { release."20210328".sha256 = "sha256:1y5r1zm3hli10ah6lnj7n8hxad6rb6rgldd0g7m2fjibzvwqzhdg"; release."20181102".rev = "82a85b7ec07e71fa6b30cfc05f6a7bfb09ef2510"; release."20181102".sha256 = "08zry20flgj7qq37xk32kzmg4fg6d4wi9m7pf9aph8fd3j2a0b5v"; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/pkgs/development/coq-modules/VST/default.nix b/pkgs/development/coq-modules/VST/default.nix index b726a81c24c94..8a4243a870430 100644 --- a/pkgs/development/coq-modules/VST/default.nix +++ b/pkgs/development/coq-modules/VST/default.nix @@ -25,10 +25,12 @@ mkCoqDerivation { repo = "VST"; inherit version; defaultVersion = with versions; switch coq.coq-version [ + { case = range "8.15" "8.16"; out = "2.11.1"; } { case = range "8.14" "8.16"; out = "2.10"; } { case = range "8.13" "8.15"; out = "2.9"; } { case = range "8.12" "8.13"; out = "2.8"; } ] null; + release."2.11.1".sha256 = "sha256-unpNstZBnRT4dIqAYOv9n1J0tWJMeRuaaa2RG1U0Xs0="; release."2.10".sha256 = "sha256-RIxfPWoHnV1CFkpxCusoGY/LIk07TgC7wWGRP4BSq8w="; release."2.9".sha256 = "sha256:1adwzbl1pprrrwrm7cm493098fizxanxpv7nyfbvwdhgbhcnv6qf"; release."2.8".sha256 = "sha256-cyK88uzorRfjapNQ6XgQEmlbWnDsiyLve5po1VG52q0="; diff --git a/pkgs/development/coq-modules/Verdi/default.nix b/pkgs/development/coq-modules/Verdi/default.nix index 190758855f78a..80b964b390428 100644 --- a/pkgs/development/coq-modules/Verdi/default.nix +++ b/pkgs/development/coq-modules/Verdi/default.nix @@ -21,5 +21,9 @@ with lib; mkCoqDerivation { release."20181102".sha256 = "1vw47c37k5vaa8vbr6ryqy8riagngwcrfmb3rai37yi9xhdqg55z"; propagatedBuildInputs = [ Cheerios InfSeqExt ssreflect ]; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/pkgs/development/dotnet-modules/boogie-deps.nix b/pkgs/development/dotnet-modules/boogie-deps.nix index 251b82a8fe678..c0bd976200fa3 100644 --- a/pkgs/development/dotnet-modules/boogie-deps.nix +++ b/pkgs/development/dotnet-modules/boogie-deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Microsoft.Bcl.AsyncInterfaces"; version = "6.0.0"; sha256 = "15gqy2m14fdlvy1g59207h5kisznm355kbw010gy19vh47z8gpz3"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "16.2.0"; sha256 = "07h1ylca2j7a4hznq4m4b8nrzv1lw7gcf848k2a3nbm6rapv61ki"; }) @@ -20,14 +23,51 @@ (fetchNuGet { pname = "Newtonsoft.Json"; version = "9.0.1"; sha256 = "0mcy0i7pnfpqm4pcaiyzzji4g0c8i3a5gjz28rrr28110np8304r"; }) (fetchNuGet { pname = "NUnit"; version = "3.12.0"; sha256 = "1880j2xwavi8f28vxan3hyvdnph4nlh5sbmh285s4lc9l0b7bdk2"; }) (fetchNuGet { pname = "NUnit3TestAdapter"; version = "3.15.1"; sha256 = "1nhpvzxbxgymmkb3bd5ci40rg8k71bfx2ghbgc99znvnvhf2034y"; }) + (fetchNuGet { pname = "runtime.any.System.Collections"; version = "4.3.0"; sha256 = "0bv5qgm6vr47ynxqbnkc7i797fdi8gbjjxii173syrx14nmrkwg0"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "1wl76vk12zhdh66vmagni66h5xbhgqq7zkdpgw21jhxhvlbcl8pk"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "00j6nv2xgmd3bi347k00m7wr542wjlig53rmj28pmw7ddcn97jbn"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization"; version = "4.3.0"; sha256 = "1daqf33hssad94lamzg01y49xwndy2q97i2lrb7mgn28656qia1x"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization.Calendars"; version = "4.3.0"; sha256 = "1ghhhk5psqxcg6w88sxkqrc35bxcz27zbqm2y5p5298pv3v7g201"; }) + (fetchNuGet { pname = "runtime.any.System.IO"; version = "4.3.0"; sha256 = "0l8xz8zn46w4d10bcn3l4yyn4vhb3lrj2zw8llvz7jk14k4zps5x"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection"; version = "4.3.0"; sha256 = "02c9h3y35pylc0zfq3wcsvc5nqci95nrkq0mszifc0sjx7xrzkly"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Extensions"; version = "4.3.0"; sha256 = "0zyri97dfc5vyaz9ba65hjj1zbcrzaffhsdlpxc9bh09wy22fq33"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Primitives"; version = "4.3.0"; sha256 = "0x1mm8c6iy8rlxm8w9vqw7gb7s1ljadrn049fmf70cyh42vdfhrf"; }) + (fetchNuGet { pname = "runtime.any.System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "03kickal0iiby82wa5flar18kyv82s9s6d4xhk5h4bi5kfcyfjzl"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime"; version = "4.3.0"; sha256 = "1cqh1sv3h5j7ixyb7axxbdkqx6cxy00p4np4j91kpm492rf4s25b"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.Handles"; version = "4.3.0"; sha256 = "0bh5bi25nk9w9xi8z23ws45q5yia6k7dg3i4axhfqlnj145l011x"; }) + (fetchNuGet { pname = 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sha256 = "0fv3cma1jp4vgj7a8hqc9n7hr1f1kjp541s6z0q1r6nazb4iz9mz"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.0.0"; sha256 = "13s659bcmg9nwb6z78971z1lr6bmh2wghxi1ayqyzl4jijd351gr"; }) + (fetchNuGet { pname = "System.Buffers"; version = "4.3.0"; sha256 = "0fgns20ispwrfqll4q1zc1waqcmylb3zc50ys9x8zlwxh9pmd9jy"; }) (fetchNuGet { pname = "System.Collections"; version = "4.0.11"; sha256 = "1ga40f5lrwldiyw6vy67d0sg7jd7ww6kgwbksm19wrvq9hr0bsm6"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) (fetchNuGet { pname = "System.Collections.Concurrent"; version = "4.0.12"; sha256 = "07y08kvrzpak873pmyxs129g1ch8l27zmg51pcyj2jvq03n0r0fc"; }) @@ -55,6 +95,7 @@ (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1"; sha256 = "19cknvg07yhakcvpxg3cxa0bwadplin6kyxd8mpjjpwnp56nl85x"; }) (fetchNuGet { pname = "System.Diagnostics.TraceSource"; version = "4.0.0"; sha256 = "1mc7r72xznczzf6mz62dm8xhdi14if1h8qgx353xvhz89qyxsa3h"; }) (fetchNuGet { pname = "System.Diagnostics.Tracing"; version = "4.1.0"; sha256 = "1d2r76v1x610x61ahfpigda89gd13qydz6vbwzhpqlyvq8jj6394"; }) + (fetchNuGet { pname = "System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "1m3bx6c2s958qligl67q7grkwfz3w53hpy7nc97mh6f7j5k168c4"; }) (fetchNuGet { pname = "System.Drawing.Common"; version = "6.0.0"; sha256 = "02n8rzm58dac2np8b3xw8ychbvylja4nh6938l5k2fhyn40imlgz"; }) (fetchNuGet { pname = "System.Dynamic.Runtime"; version = "4.0.11"; sha256 = "1pla2dx8gkidf7xkciig6nifdsb494axjvzvann8g2lp3dbqasm9"; }) (fetchNuGet { pname = "System.Globalization"; version = "4.0.11"; sha256 = "070c5jbas2v7smm660zaf1gh0489xanjqymkvafcs4f8cdrs1d5d"; }) @@ -75,10 +116,12 @@ (fetchNuGet { pname = "System.Linq.Async"; version = "6.0.1"; sha256 = "10ira8hmv0i54yp9ggrrdm1c06j538sijfjpn1kmnh9j2xk5yzmq"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.1.0"; sha256 = "1gpdxl6ip06cnab7n3zlcg6mqp7kknf73s8wjinzi4p0apw82fpg"; }) (fetchNuGet { pname = "System.Net.Http"; version = "4.1.0"; sha256 = "1i5rqij1icg05j8rrkw4gd4pgia1978mqhjzhsjg69lvwcdfg8yb"; }) + (fetchNuGet { pname = "System.Net.NameResolution"; version = "4.3.0"; sha256 = "15r75pwc0rm3vvwsn8rvm2krf929mjfwliv0mpicjnii24470rkq"; }) (fetchNuGet { pname = "System.Net.Primitives"; version = "4.0.11"; sha256 = "10xzzaynkzkakp7jai1ik3r805zrqjxiz7vcagchyxs2v26a516r"; }) (fetchNuGet { pname = "System.Net.Sockets"; version = "4.1.0"; sha256 = "1385fvh8h29da5hh58jm1v78fzi9fi5vj93vhlm2kvqpfahvpqls"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12"; sha256 = "1sybkfi60a4588xn34nd9a58png36i0xr4y4v4kqpg8wlvy5krrj"; }) (fetchNuGet { pname = "System.Private.DataContractSerialization"; version = "4.1.1"; sha256 = "1xk9wvgzipssp1393nsg4n16zbr5481k03nkdlj954hzq5jkx89r"; }) + (fetchNuGet { pname = "System.Private.Uri"; version = "4.3.0"; sha256 = "04r1lkdnsznin0fj4ya1zikxiqr0h6r6a1ww2dsm60gqhdrf0mvx"; }) (fetchNuGet { pname = "System.Reactive"; version = "4.4.1"; sha256 = "0gx8jh3hny2y5kijz5k9pxiqw481d013787c04zlhps21ygklw4a"; }) (fetchNuGet { pname = "System.Reflection"; version = "4.1.0"; sha256 = "1js89429pfw79mxvbzp8p3q93il6rdff332hddhzi5wqglc4gml9"; }) (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) @@ -110,6 +153,7 @@ (fetchNuGet { pname = "System.Runtime.Serialization.Json"; version = "4.0.2"; sha256 = "08ypbzs0sb302ga04ds5b2wxa2gg0q50zpa0nvc87ipjhs0v66dn"; }) (fetchNuGet { pname = "System.Runtime.Serialization.Primitives"; version = "4.1.1"; sha256 = "042rfjixknlr6r10vx2pgf56yming8lkjikamg3g4v29ikk78h7k"; }) (fetchNuGet { pname = "System.Security.AccessControl"; version = "6.0.0"; sha256 = "0a678bzj8yxxiffyzy60z2w1nczzpi8v97igr4ip3byd2q89dv58"; }) + (fetchNuGet { pname = "System.Security.Claims"; version = "4.3.0"; sha256 = "0jvfn7j22l3mm28qjy3rcw287y9h65ha4m940waaxah07jnbzrhn"; }) (fetchNuGet { pname = "System.Security.Cryptography.Algorithms"; version = "4.2.0"; sha256 = "148s9g5dgm33ri7dnh19s4lgnlxbpwvrw2jnzllq2kijj4i4vs85"; }) (fetchNuGet { pname = "System.Security.Cryptography.Cng"; version = "4.2.0"; sha256 = "118jijz446kix20blxip0f0q8mhsh9bz118mwc2ch1p6g7facpzc"; }) (fetchNuGet { pname = "System.Security.Cryptography.Csp"; version = "4.0.0"; sha256 = "1cwv8lqj8r15q81d2pz2jwzzbaji0l28xfrpw29kdpsaypm92z2q"; }) @@ -119,6 +163,8 @@ (fetchNuGet { pname = "System.Security.Cryptography.ProtectedData"; version = "6.0.0"; sha256 = "05kd3a8w7658hjxq9vvszxip30a479fjmfq4bq1r95nrsvs4hbss"; }) (fetchNuGet { pname = "System.Security.Cryptography.X509Certificates"; version = "4.1.0"; sha256 = "0clg1bv55mfv5dq00m19cp634zx6inm31kf8ppbq1jgyjf2185dh"; }) (fetchNuGet { pname = "System.Security.Permissions"; version = "6.0.0"; sha256 = "0jsl4xdrkqi11iwmisi1r2f2qn5pbvl79mzq877gndw6ans2zhzw"; }) + (fetchNuGet { pname = "System.Security.Principal"; version = "4.3.0"; sha256 = "12cm2zws06z4lfc4dn31iqv7072zyi4m910d4r6wm8yx85arsfxf"; }) + (fetchNuGet { pname = "System.Security.Principal.Windows"; version = "4.3.0"; sha256 = "00a0a7c40i3v4cb20s2cmh9csb5jv2l0frvnlzyfxh848xalpdwr"; }) (fetchNuGet { pname = "System.Text.Encoding"; version = "4.0.11"; sha256 = "1dyqv0hijg265dwxg6l7aiv74102d6xjiwplh2ar1ly6xfaa4iiw"; }) (fetchNuGet { pname = "System.Text.Encoding"; version = "4.3.0"; sha256 = "1f04lkir4iladpp51sdgmis9dj4y8v08cka0mbmsy0frc9a4gjqr"; }) (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.0.11"; sha256 = "08nsfrpiwsg9x5ml4xyl3zyvjfdi4mvbqf93kjdh11j4fwkznizs"; }) diff --git a/pkgs/development/dotnet-modules/python-language-server/default.nix b/pkgs/development/dotnet-modules/python-language-server/default.nix index a197f158bb6b3..3044e884e3c68 100644 --- a/pkgs/development/dotnet-modules/python-language-server/default.nix +++ b/pkgs/development/dotnet-modules/python-language-server/default.nix @@ -26,8 +26,6 @@ buildDotnetModule rec { dotnet-sdk = dotnetCorePackages.sdk_3_1; dotnet-runtime = dotnetCorePackages.runtime_3_1; - dotnetRestoreFlags = [ "--runtime ${dotnet-sdk.systemToDotnetRid stdenvNoCC.targetPlatform.system}" ]; - nativeBuildInputs = [ autoPatchelfHook ]; buildInputs = [ stdenv.cc.cc.lib ]; runtimeDeps = [ openssl icu ]; diff --git a/pkgs/development/embedded/platformio/core.nix b/pkgs/development/embedded/platformio/core.nix index afd60ec2aebc7..a9b6e156b8743 100644 --- a/pkgs/development/embedded/platformio/core.nix +++ b/pkgs/development/embedded/platformio/core.nix @@ -21,7 +21,7 @@ with python3.pkgs; buildPythonApplication rec { --subst-var-by SPDX_LICENSE_LIST_DATA '${spdx-license-list-data.json}' substituteInPlace setup.py \ - --replace 'uvicorn==%s" % ("0.16.0" if PY36 else "0.19.*")' 'uvicorn>=0.16,<=0.19"' \ + --replace 'uvicorn==%s" % ("0.16.0" if PY36 else "0.19.*")' 'uvicorn>=0.16"' \ --replace 'starlette==%s" % ("0.19.1" if PY36 else "0.21.*")' 'starlette>=0.19.1,<=0.21"' \ --replace 'tabulate==%s" % ("0.8.10" if PY36 else "0.9.*")' 'tabulate>=0.8.10,<=0.9"' \ --replace 'wsproto==' 'wsproto>=' diff --git a/pkgs/development/guile-modules/guile-fibers/default.nix b/pkgs/development/guile-modules/guile-fibers/default.nix index 606162ab94c09..d412c181e95c4 100644 --- a/pkgs/development/guile-modules/guile-fibers/default.nix +++ b/pkgs/development/guile-modules/guile-fibers/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "guile-fibers"; - version = "1.1.1"; + version = "1.2.0"; src = fetchFromGitHub { owner = "wingo"; repo = "fibers"; rev = "v${version}"; - hash = "sha256-jEY6i+uTqDkXZKdpK+/GRLlK7aJxkRneVZQJIE4bhlI="; + hash = "sha256-3q1mJImce96Dn37UbofaNHj54Uzs1p4XyMNzpu3PdXQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/haskell-modules/HACKING.md b/pkgs/development/haskell-modules/HACKING.md index 752f1ba4943c4..12afee84b156c 100644 --- a/pkgs/development/haskell-modules/HACKING.md +++ b/pkgs/development/haskell-modules/HACKING.md @@ -71,7 +71,7 @@ $ ./maintainers/scripts/haskell/hydra-report.hs get-report $ ./maintainers/scripts/haskell/hydra-report.hs ping-maintainers ``` -The `hyda-report.hs ping-maintainers` command generates a Markdown document +The `hydra-report.hs ping-maintainers` command generates a Markdown document that you can paste in a GitHub comment on the PR opened above. This comment describes which Haskell packages are now failing to build. It also pings the maintainers so that they know to fix up their packages. diff --git a/pkgs/development/haskell-modules/cabal2nix-unstable.nix b/pkgs/development/haskell-modules/cabal2nix-unstable.nix index d503463858f7b..cf4335115863f 100644 --- a/pkgs/development/haskell-modules/cabal2nix-unstable.nix +++ b/pkgs/development/haskell-modules/cabal2nix-unstable.nix @@ -8,10 +8,10 @@ }: mkDerivation { pname = "cabal2nix"; - version = "unstable-2022-10-22"; + version = "unstable-2022-12-08"; src = fetchzip { - url = "https://github.com/NixOS/cabal2nix/archive/bf7cc8f202e332953f7fbfc1d90490e4c197d287.tar.gz"; - sha256 = "0fmpfl2nl215aids9yxdmdik77w7cppk900rnx23m07rmwg4xa4f"; + url = "https://github.com/NixOS/cabal2nix/archive/021a48f4b4942462154b06fd81429a248638f87f.tar.gz"; + sha256 = "1is1q5mqi86vzy3ni2959hr95gs9hwd5wiz92hanfli3infg00xc"; }; postUnpack = "sourceRoot+=/cabal2nix; echo source root reset to $sourceRoot"; isLibrary = true; diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 8267a47ff7e90..bbbe91baf78c6 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -12,7 +12,7 @@ { pkgs, haskellLib }: let - inherit (pkgs) fetchpatch lib; + inherit (pkgs) fetchpatch fetchpatch2 lib; inherit (lib) throwIfNot versionOlder; in @@ -60,37 +60,15 @@ self: super: { ghc-datasize = disableLibraryProfiling super.ghc-datasize; ghc-vis = disableLibraryProfiling super.ghc-vis; - # Patch providing GHC9 compat, can be removed once the following gets released: - # > https://github.com/adinapoli/snaplet-purescript/pull/25 - snaplet-purescript = appendPatch (fetchpatch { - url = "https://github.com/adinapoli/snaplet-purescript/commit/4c7457d9357558524d4d19ff7c7f13f85b442539.patch"; - sha256 = "sha256-wpNvCO6txEvSv8LjQaaEIbBBPJnFaMpFx5ER8BT9lXo="; - }) super.snaplet-purescript; - # The latest release on hackage has an upper bound on containers which # breaks the build, though it works with the version of containers present # and the upper bound doesn't exist in code anymore: # > https://github.com/roelvandijk/numerals numerals = doJailbreak (dontCheck super.numerals); - # Waiting on a release with the following for bumping base and - # attoparsec upper bounds: - # > https://github.com/snapframework/io-streams-haproxy/pull/21 - # > https://github.com/snapframework/io-streams-haproxy/pull/24 - io-streams-haproxy = doJailbreak super.io-streams-haproxy; - - # xmlhtml's test suite depends on hspec with an invalid boundry range for - # the version we currently track, even though the upper bound is relaxed on - # github it doesn't have a release yet; though there's an MR preparing the - # next release: - # > https://github.com/snapframework/xmlhtml/pull/40 - # Once that's out we can re-enable version checks. - xmlhtml = doJailbreak super.xmlhtml; - - # map-syntax has a restrictive upper bound on base, can be removed once - # > https://github.com/mightybyte/map-syntax/pull/14 - # is released. - map-syntax = doJailbreak super.map-syntax; + # Too stricut upper bound on time + # https://github.com/acw/rate-limit/issues/9 + rate-limit = doJailbreak super.rate-limit; # This test keeps being aborted because it runs too quietly for too long Lazy-Pbkdf2 = if pkgs.stdenv.isi686 then dontCheck super.Lazy-Pbkdf2 else super.Lazy-Pbkdf2; @@ -106,7 +84,7 @@ self: super: { name = "git-annex-${super.git-annex.version}-src"; url = "git://git-annex.branchable.com/"; rev = "refs/tags/" + super.git-annex.version; - sha256 = "14391vj0awvkpsd32kanmc85yic5mg4pxmjhiv7wjxy7ga13wfqw"; + sha256 = "052ld021yvjbnx1sbj1ryflsyn0v1y1ygx1zv0ql6fk3cysw5lxf"; # delete android and Android directories which cause issues on # darwin (case insensitive directory). Since we don't need them # during the build process, we can delete it to prevent a hash @@ -137,26 +115,14 @@ self: super: { # https://github.com/froozen/kademlia/issues/2 kademlia = dontCheck super.kademlia; - # https://github.com/haskell-game/dear-imgui.hs/issues/116 - dear-imgui = doJailbreak super.dear-imgui; - # Tests require older versions of tasty. hzk = dontCheck super.hzk; resolv = doJailbreak super.resolv; - tdigest = doJailbreak super.tdigest; - text-short = doJailbreak super.text-short; - tree-diff = doJailbreak super.tree-diff; - zinza = doJailbreak super.zinza; - - # Too strict upper bound on base, no upstream issue tracker nor repository - mmsyn5 = doJailbreak super.mmsyn5; # Tests require a Kafka broker running locally haskakafka = dontCheck super.haskakafka; - bindings-levmar = overrideCabal (drv: { - extraLibraries = [ pkgs.blas ]; - }) super.bindings-levmar; + bindings-levmar = addExtraLibrary pkgs.blas super.bindings-levmar; # Requires wrapQtAppsHook qtah-cpp-qt5 = overrideCabal (drv: { @@ -169,20 +135,9 @@ self: super: { hoodle-core = dontHaddock super.hoodle-core; hsc3-db = dontHaddock super.hsc3-db; - # Pick patch from master for GHC 9.0 support - flat = assert versionOlder super.flat.version "0.5"; appendPatches [ - (fetchpatch { - name = "flat-ghc-9.0.patch"; - url = "https://github.com/Quid2/flat/commit/d32c2c0c0c3c38c41177684ade9febe92d279b06.patch"; - sha256 = "0ay0c53jpjmnnh7ylfpzpxqkhs1vq9jdwm9f84d40r88ki8hls8g"; - }) - ] super.flat; - - # Too strict bounds on base, optparse-applicative: https://github.com/edsko/friendly/issues/5 - friendly = doJailbreak super.friendly; - - # Too strict bound on hspec: https://github.com/ivan-m/graphviz/issues/55 - graphviz = doJailbreak super.graphviz; + # Fix build with time >= 1.10 while retaining compat with time < 1.9 + mbox = appendPatch ./patches/mbox-time-1.10.patch + (overrideCabal { editedCabalFile = null; revision = null; } super.mbox); # https://github.com/techtangents/ablist/issues/1 ABList = dontCheck super.ABList; @@ -234,7 +189,6 @@ self: super: { pocket-dns = dontCheck super.pocket-dns; postgresql-simple = dontCheck super.postgresql-simple; squeal-postgresql = dontCheck super.squeal-postgresql; - postgrest = dontCheck super.postgrest; postgrest-ws = dontCheck super.postgrest-ws; snowball = dontCheck super.snowball; sophia = dontCheck super.sophia; @@ -256,16 +210,15 @@ self: super: { })); # 2020-06-05: HACK: does not pass own build suite - `dontCheck` - # 2022-06-17: Use hnix-store 0.5 until hnix 0.17 - hnix = self.generateOptparseApplicativeCompletions [ "hnix" ] (dontCheck ( - super.hnix.overrideScope (hself: hsuper: { - hnix-store-core = hself.hnix-store-core_0_5_0_0; - hnix-store-remote = hself.hnix-store-remote_0_5_0_0; - }) - )); - # Too strict bounds on algebraic-graphs + # 2022-11-24: jailbreak as it has too strict bounds on a bunch of things + hnix = self.generateOptparseApplicativeCompletions [ "hnix" ] (dontCheck (doJailbreak super.hnix)); + # Too strict bounds on algebraic-graphs and bytestring # https://github.com/haskell-nix/hnix-store/issues/180 - hnix-store-core_0_5_0_0 = doJailbreak super.hnix-store-core_0_5_0_0; + hnix-store-core = doJailbreak super.hnix-store-core; + + # Too strict upper bound on bytestring + # https://github.com/wangbj/hashing/issues/3 + hashing = doJailbreak super.hashing; # Fails for non-obvious reasons while attempting to use doctest. focuslist = dontCheck super.focuslist; @@ -288,7 +241,6 @@ self: super: { aws-kinesis = dontCheck super.aws-kinesis; # needs aws credentials for testing binary-protocol = dontCheck super.binary-protocol; # http://hydra.cryp.to/build/499749/log/raw binary-search = dontCheck super.binary-search; - bits = dontCheck super.bits; # http://hydra.cryp.to/build/500239/log/raw bloodhound = dontCheck super.bloodhound; # https://github.com/plow-technologies/quickcheck-arbitrary-template/issues/10 buildwrapper = dontCheck super.buildwrapper; burst-detection = dontCheck super.burst-detection; # http://hydra.cryp.to/build/496948/log/raw @@ -318,11 +270,9 @@ self: super: { fb = dontCheck super.fb; # needs credentials for Facebook fptest = dontCheck super.fptest; # http://hydra.cryp.to/build/499124/log/raw friday-juicypixels = dontCheck super.friday-juicypixels; #tarball missing test/rgba8.png - ghc-events = dontCheck super.ghc-events; # http://hydra.cryp.to/build/498226/log/raw ghc-events-parallel = dontCheck super.ghc-events-parallel; # http://hydra.cryp.to/build/496828/log/raw ghc-imported-from = dontCheck super.ghc-imported-from; ghc-parmake = dontCheck super.ghc-parmake; - ghcid = dontCheck super.ghcid; git-vogue = dontCheck super.git-vogue; github-rest = dontCheck super.github-rest; # test suite needs the network gitlib-cmdline = dontCheck super.gitlib-cmdline; @@ -441,16 +391,9 @@ self: super: { # https://github.com/bos/snappy/issues/1 snappy = dontCheck super.snappy; - # https://ghc.haskell.org/trac/ghc/ticket/9625 - vty = dontCheck super.vty; - # https://github.com/vincenthz/hs-crypto-pubkey/issues/20 crypto-pubkey = dontCheck super.crypto-pubkey; - # Test suite works with aeson 2.0 only starting with 0.14.1 - vinyl = assert versionOlder super.vinyl.version "0.14.1"; - dontCheck super.vinyl; - # https://github.com/Philonous/xml-picklers/issues/5 xml-picklers = dontCheck super.xml-picklers; @@ -458,14 +401,11 @@ self: super: { stm-delay = dontCheck super.stm-delay; # https://github.com/pixbi/duplo/issues/25 - duplo = dontCheck super.duplo; + duplo = doJailbreak super.duplo; # https://github.com/evanrinehart/mikmod/issues/1 mikmod = addExtraLibrary pkgs.libmikmod super.mikmod; - # https://github.com/basvandijk/threads/issues/10 - threads = dontCheck super.threads; - # Missing module. rematch = dontCheck super.rematch; # https://github.com/tcrayford/rematch/issues/5 rematch-text = dontCheck super.rematch-text; # https://github.com/tcrayford/rematch/issues/6 @@ -499,23 +439,8 @@ self: super: { # https://github.com/junjihashimoto/test-sandbox-compose/issues/2 test-sandbox-compose = dontCheck super.test-sandbox-compose; - # Waiting on language-python 0.5.8 https://github.com/bjpop/language-python/issues/60 - xcffib = dontCheck super.xcffib; - - # https://github.com/afcowie/locators/issues/1 - locators = dontCheck super.locators; - # Test suite won't compile against tasty-hunit 0.10.x. - binary-parser = dontCheck super.binary-parser; binary-parsers = dontCheck super.binary-parsers; - bytestring-strict-builder = dontCheck super.bytestring-strict-builder; - bytestring-tree-builder = dontCheck super.bytestring-tree-builder; - - # https://github.com/byteverse/bytebuild/issues/19 - bytebuild = dontCheck super.bytebuild; - - # https://github.com/andrewthad/haskell-ip/issues/67 - ip = dontCheck super.ip; # https://github.com/ndmitchell/shake/issues/804 shake = dontCheck super.shake; @@ -536,12 +461,10 @@ self: super: { # else dontCheck super.doctest-discover); doctest-discover = dontCheck super.doctest-discover; - tasty-discover = overrideCabal (drv: { - # Depends on itself for testing - preBuild = '' - export PATH="$PWD/dist/build/tasty-discover:$PATH" - '' + (drv.preBuild or ""); - }) super.tasty-discover; + # Test suite is missing an import from hspec + # https://github.com/haskell-works/tasty-discover/issues/9 + # https://github.com/commercialhaskell/stackage/issues/6584#issuecomment-1326522815 + tasty-discover = assert super.tasty-discover.version == "4.2.2"; dontCheck super.tasty-discover; # Known issue with nondeterministic test suite failure # https://github.com/nomeata/tasty-expected-failure/issues/21 @@ -559,6 +482,12 @@ self: super: { # https://github.com/kkardzis/curlhs/issues/6 curlhs = dontCheck super.curlhs; + # Too strict upper bounds on bytestring & time + # https://github.com/barrucadu/irc-conduit/issues/35 + irc-conduit = doJailbreak super.irc-conduit; + # https://github.com/barrucadu/irc-client/issues/77 + irc-client = doJailbreak super.irc-client; + # https://github.com/hvr/token-bucket/issues/3 token-bucket = dontCheck super.token-bucket; @@ -568,12 +497,6 @@ self: super: { # FPCO's fork of Cabal won't succeed its test suite. Cabal-ide-backend = dontCheck super.Cabal-ide-backend; - # QuickCheck version, also set in cabal2nix - websockets = dontCheck super.websockets; - - # Avoid spurious test suite failures. - fft = dontCheck super.fft; - # This package can't be built on non-Windows systems. Win32 = overrideCabal (drv: { broken = !pkgs.stdenv.isCygwin; }) super.Win32; inline-c-win32 = dontDistribute super.inline-c-win32; @@ -672,17 +595,27 @@ self: super: { doCheck = false; # https://github.com/chrisdone/hindent/issues/299 }) super.hindent); - # https://github.com/bos/configurator/issues/22 - configurator = dontCheck super.configurator; - # https://github.com/basvandijk/concurrent-extra/issues/12 concurrent-extra = dontCheck super.concurrent-extra; - # https://github.com/bos/bloomfilter/issues/7 - bloomfilter = appendPatch ./patches/bloomfilter-fix-on-32bit.patch super.bloomfilter; - - # https://github.com/ashutoshrishi/hunspell-hs/pull/3 - hunspell-hs = addPkgconfigDepend pkgs.hunspell (dontCheck (appendPatch ./patches/hunspell.patch super.hunspell-hs)); + bloomfilter = appendPatches [ + # https://github.com/bos/bloomfilter/issues/7 + ./patches/bloomfilter-fix-on-32bit.patch + # Fix build with GHC >= 9.2 by using stock unsafeShift* functions + # https://github.com/bos/bloomfilter/pull/20 + (pkgs.fetchpatch { + name = "bloomfilter-ghc-9.2-shift.patch"; + url = "https://github.com/bos/bloomfilter/pull/20/commits/fb79b39c44404fd791a3bed973e9d844fb084f1e.patch"; + sha256 = "0clmr5iar4mhp8nbgh1c1rh4fl7dy0g2kbqqh0af8aqmhjpqzrq3"; + }) + ] (overrideCabal (drv: { + # Make sure GHC 9.2 patch applies correctly + revision = null; + editedCabalFile = null; + prePatch = drv.prePatch or "" + '' + "${pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal + ''; + }) super.bloomfilter); # https://github.com/pxqr/base32-bytestring/issues/4 base32-bytestring = dontCheck super.base32-bytestring; @@ -745,9 +678,6 @@ self: super: { # note: the library is unmaintained, no upstream issue dataenc = doJailbreak super.dataenc; - # https://github.com/divipp/ActiveHs-misc/issues/10 - data-pprint = doJailbreak super.data-pprint; - # horribly outdated (X11 interface changed a lot) sindre = markBroken super.sindre; @@ -757,9 +687,6 @@ self: super: { # https://github.com/mulby/diff-parse/issues/9 diff-parse = doJailbreak super.diff-parse; - # https://github.com/josefs/STMonadTrans/issues/4 - STMonadTrans = dontCheck super.STMonadTrans; - # No upstream issue tracker hspec-expectations-pretty-diff = dontCheck super.hspec-expectations-pretty-diff; @@ -767,27 +694,17 @@ self: super: { # QuickCheck to versions ">=2.3 && <2.9". system-filepath = dontCheck super.system-filepath; - # https://github.com/hvr/uuid/issues/28 - uuid-types = doJailbreak super.uuid-types; - uuid = doJailbreak super.uuid; - # The tests spuriously fail libmpd = dontCheck super.libmpd; - # https://github.com/diagrams/diagrams-braille/issues/1 - diagrams-braille = doJailbreak super.diagrams-braille; - # https://github.com/xu-hao/namespace/issues/1 namespace = doJailbreak super.namespace; - # https://github.com/diagrams/diagrams-solve/issues/4 - diagrams-solve = dontCheck super.diagrams-solve; - # https://github.com/danidiaz/streaming-eversion/issues/1 streaming-eversion = dontCheck super.streaming-eversion; # https://github.com/danidiaz/tailfile-hinotify/issues/2 - tailfile-hinotify = dontCheck super.tailfile-hinotify; + tailfile-hinotify = doJailbreak (dontCheck super.tailfile-hinotify); # Test suite fails: https://github.com/lymar/hastache/issues/46. # Don't install internal mkReadme tool. @@ -799,16 +716,10 @@ self: super: { # Has a dependency on outdated versions of directory. cautious-file = doJailbreak (dontCheck super.cautious-file); - # test suite does not compile with recent versions of QuickCheck - integer-logarithms = dontCheck (super.integer-logarithms); - # missing dependencies: blaze-html >=0.5 && <0.9, blaze-markup >=0.5 && <0.8 digestive-functors-blaze = doJailbreak super.digestive-functors-blaze; digestive-functors = doJailbreak super.digestive-functors; - # https://github.com/takano-akio/filelock/issues/5 - filelock = dontCheck super.filelock; - # Wrap the generated binaries to include their run-time dependencies in # $PATH. Also, cryptol needs a version of sbl that's newer than what we have # in LTS-13.x. @@ -833,9 +744,9 @@ self: super: { testHaskellDepends = drv.testHaskellDepends or [] ++ [ self.hspec-meta_2_10_5 ]; testToolDepends = drv.testToolDepends or [] ++ [ pkgs.git ]; }) (super.sensei.override { - hspec = self.hspec_2_10_6; + hspec = self.hspec_2_10_7; hspec-wai = super.hspec-wai.override { - hspec = self.hspec_2_10_6; + hspec = self.hspec_2_10_7; }; }); @@ -860,52 +771,15 @@ self: super: { # Needs QuickCheck <2.10, which we don't have. edit-distance = doJailbreak super.edit-distance; - blaze-html = doJailbreak super.blaze-html; int-cast = doJailbreak super.int-cast; # Needs QuickCheck <2.10, HUnit <1.6 and base <4.10 pointfree = doJailbreak super.pointfree; - # The project is stale - # - # Archiving request: https://github.com/haskell-hvr/cryptohash-sha512/issues/6 - # - # doJailbreak since base <4.12 && bytestring <0.11 - # Request to support: - # https://github.com/haskell-hvr/cryptohash-sha512/issues/4 - # PRs to support base <4.12: - # https://github.com/haskell-hvr/cryptohash-sha512/pull/3 - # https://github.com/haskell-hvr/cryptohash-sha512/pull/5 - # - # dontCheck since test suite does not support new `base16-bytestring` >= 1 format - # https://github.com/haskell-hvr/cryptohash-sha512/pull/5#issuecomment-752796913 - cryptohash-sha512 = dontCheck (doJailbreak super.cryptohash-sha512); - - # https://github.com/haskell-hvr/cryptohash-sha256/issues/11 - # Jailbreak is necessary to break out of tasty < 1.x dependency. - # hackage2nix generates this as a broken package due to the (fake) dependency - # missing from hackage, so we need to fix the meta attribute set. - cryptohash-sha256 = overrideCabal (drv: { - jailbreak = true; - broken = false; - hydraPlatforms = lib.platforms.all; - }) super.cryptohash-sha256; - - # The test suite has all kinds of out-dated dependencies, so it feels easier - # to just disable it. - cryptohash-sha1 = dontCheck super.cryptohash-sha1; - cryptohash-md5 = dontCheck super.cryptohash-md5; - # Needs tasty-quickcheck ==0.8.*, which we don't have. gitHUD = dontCheck super.gitHUD; githud = dontCheck super.githud; - # https://github.com/aisamanra/config-ini/issues/12 - config-ini = dontCheck super.config-ini; - - # doctest >=0.9 && <0.12 - path = dontCheck super.path; - # Test suite fails due to trying to create directories path-io = dontCheck super.path-io; @@ -919,14 +793,7 @@ self: super: { # https://github.com/alphaHeavy/protobuf/issues/34 protobuf = dontCheck super.protobuf; - # Is this package still maintained? https://github.com/haskell/text-icu/issues/30 - text-icu = overrideCabal (drv: { - doCheck = false; # https://github.com/bos/text-icu/issues/32 - configureFlags = ["--ghc-option=-DU_DEFINE_FALSE_AND_TRUE=1"]; # https://github.com/haskell/text-icu/issues/49 - }) super.text-icu; - # jailbreak tasty < 1.2 until servant-docs > 0.11.3 is on hackage. - servant-docs = doJailbreak super.servant-docs; snap-templates = doJailbreak super.snap-templates; # https://github.com/snapframework/snap-templates/issues/22 # Copy hledger man pages from data directory into the proper place. This code @@ -987,7 +854,8 @@ self: super: { # Compiles some C or C++ source which requires these headers VulkanMemoryAllocator = addExtraLibrary pkgs.vulkan-headers super.VulkanMemoryAllocator; - vulkan-utils = addExtraLibrary pkgs.vulkan-headers super.vulkan-utils; + # dontCheck can be removed on the next package set bump + vulkan-utils = dontCheck (addExtraLibrary pkgs.vulkan-headers super.vulkan-utils); # https://github.com/dmwit/encoding/pull/3 encoding = doJailbreak (appendPatch ./patches/encoding-Cabal-2.0.patch super.encoding); @@ -995,13 +863,6 @@ self: super: { # Work around overspecified constraint on github ==0.18. github-backup = doJailbreak super.github-backup; - # https://github.com/andrewthad/chronos/issues/62 - # doctests are failing on newer GHC versions - chronos = dontCheck super.chronos; - - # Test suite depends on cabal-install - doctest = dontCheck super.doctest; - # dontCheck: https://github.com/haskell-servant/servant-auth/issues/113 # doJailbreak: waiting on revision 1 to hit hackage servant-auth-client = doJailbreak (dontCheck super.servant-auth-client); @@ -1013,33 +874,32 @@ self: super: { # https://github.com/commercialhaskell/stackage/issues/5795 # This issue can be mitigated with 'dontCheck' which skips the tests and their compilation. dhall-json = self.generateOptparseApplicativeCompletions ["dhall-to-json" "dhall-to-yaml"] (dontCheck super.dhall-json); - dhall-nix = self.generateOptparseApplicativeCompletions [ "dhall-to-nix" ] super.dhall-nix; + dhall-nix = self.generateOptparseApplicativeCompletions [ "dhall-to-nix" ] + (overrideCabal (drv: { + patches = [ + # Compatibility with hnix 0.16, waiting for release + # https://github.com/dhall-lang/dhall-haskell/pull/2474 + (pkgs.fetchpatch { + name = "dhall-nix-hnix-0.16.patch"; + url = "https://github.com/dhall-lang/dhall-haskell/commit/49b9b3e3ce1718a89773c2b1bfa3c2af1a6e8752.patch"; + sha256 = "12sh5md81nlhyzzkmf7jrll3w1rvg2j48m57hfyvjn8has9c4gw6"; + stripLen = 1; + includes = [ "dhall-nix.cabal" "src/Dhall/Nix.hs" ]; + }) + ] ++ drv.patches or []; + prePatch = drv.prePatch or "" + '' + ${pkgs.buildPackages.dos2unix}/bin/dos2unix *.cabal + ''; + }) super.dhall-nix); dhall-yaml = self.generateOptparseApplicativeCompletions ["dhall-to-yaml-ng" "yaml-to-dhall"] super.dhall-yaml; - dhall-nixpkgs = self.generateOptparseApplicativeCompletions [ "dhall-to-nixpkgs" ] super.dhall-nixpkgs; - - # https://github.com/haskell-hvr/netrc/pull/2#issuecomment-469526558 - netrc = doJailbreak super.netrc; - - # https://github.com/haskell-hvr/hgettext/issues/14 - hgettext = doJailbreak super.hgettext; - - stack = - self.generateOptparseApplicativeCompletions [ "stack" ] - # stack has a bunch of constraints in its .cabal file that don't seem to be necessary - (doJailbreak - (super.stack.overrideScope (self: super: { - # Needs Cabal-3.6 - Cabal = self.Cabal_3_6_3_0; - # Official stack ships with hpack-0.35.0. Nixpkgs uses the same - # version of hpack so that users who get stack from Nixpkgs - # generate the same .cabal files as users who download official binaries - # of stack. - # - # dontCheck is used because one of the hpack tests appears to be - # incorrectly(?) failing: - # https://github.com/sol/hpack/issues/528 - hpack = dontCheck self.hpack_0_35_0; - }))); + dhall-nixpkgs = self.generateOptparseApplicativeCompletions [ "dhall-to-nixpkgs" ] + (overrideCabal (drv: { + # Allow hnix 0.16, needs unreleased bounds change + # https://github.com/dhall-lang/dhall-haskell/pull/2474 + jailbreak = assert drv.version == "1.0.9" && drv.revision == "1"; true; + }) super.dhall-nixpkgs); + + stack = self.generateOptparseApplicativeCompletions [ "stack" ] super.stack; # Too strict version bound on hashable-time. # Tests require newer package version. @@ -1049,6 +909,14 @@ self: super: { # dontCheck: use of non-standard strptime "%s" which musl doesn't support; only used in test unix-time = if pkgs.stdenv.hostPlatform.isMusl then dontCheck super.unix-time else super.unix-time; + # Workaround for https://github.com/sol/hpack/issues/528 + # The hpack test suite can't deal with the CRLF line endings hackage revisions insert + hpack = overrideCabal (drv: { + postPatch = drv.postPatch or "" + '' + "${lib.getBin pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal + ''; + }) super.hpack; + # hslua has tests that appear to break when using musl. # https://github.com/hslua/hslua/issues/106 # Note that hslua is currently version 1.3. However, in the latest version @@ -1079,13 +947,6 @@ self: super: { # Generate shell completion for spago spago = self.generateOptparseApplicativeCompletions [ "spago" ] super.spago; - # 2020-06-05: HACK: Package can not pass test suite, - # Upstream Report: https://github.com/kcsongor/generic-lens/issues/83 - generic-lens = dontCheck super.generic-lens; - - # https://github.com/danfran/cabal-macosx/issues/13 - cabal-macosx = dontCheck super.cabal-macosx; - # https://github.com/DanielG/cabal-helper/pull/123 cabal-helper = doJailbreak super.cabal-helper; @@ -1102,10 +963,6 @@ self: super: { # https://github.com/mgajda/json-autotype/issues/25 json-autotype = dontCheck super.json-autotype; - # Requires dlist <0.9 but it works fine with dlist-1.0 - # https://github.com/haskell-beam/beam/issues/581 - beam-core = doJailbreak super.beam-core; - # Requires pg_ctl command during tests beam-postgres = overrideCabal (drv: { # https://github.com/NixOS/nixpkgs/issues/198495 @@ -1124,6 +981,8 @@ self: super: { # Fix build with attr-2.4.48 (see #53716) xattr = appendPatch ./patches/xattr-fix-build.patch super.xattr; + patch = dontCheck super.patch; + esqueleto = overrideCabal (drv: { @@ -1173,9 +1032,6 @@ self: super: { # https://github.com/erikd/hjsmin/issues/32 hjsmin = dontCheck super.hjsmin; - # upstream issue: https://github.com/vmchale/atspkg/issues/12 - language-ats = dontCheck super.language-ats; - # Remove for hail > 0.2.0.0 hail = overrideCabal (drv: { patches = [ @@ -1197,9 +1053,6 @@ self: super: { # https://github.com/kazu-yamamoto/dns/issues/150 dns = dontCheck super.dns; - # https://github.com/haskell-servant/servant-blaze/issues/17 - servant-blaze = doJailbreak super.servant-blaze; - # https://github.com/haskell-servant/servant-ekg/issues/15 servant-ekg = doJailbreak super.servant-ekg; @@ -1231,9 +1084,6 @@ self: super: { # 2021-10-04: too strict upper bound on Hakyll hakyll-filestore = doJailbreak super.hakyll-filestore; - # 2020-06-22: NOTE: > 0.4.0 => rm Jailbreak: https://github.com/serokell/nixfmt/issues/71 - nixfmt = doJailbreak super.nixfmt; - # The test suite depends on an impure cabal-install installation in # $HOME, which we don't have in our build sandbox. # 2022-08-31: Jailbreak is done to allow aeson 2.0.*: @@ -1250,18 +1100,15 @@ self: super: { ); # 2022-03-12: Pick patches from master for compat with Stackage Nightly + # 2022-12-07: Lift bounds to allow dependencies shipped with LTS-20 + # https://github.com/jgm/gitit/pull/683 gitit = appendPatches [ (fetchpatch { - name = "gitit-allow-pandoc-2.17.patch"; - url = "https://github.com/jgm/gitit/commit/9eddd1d3bde46bccb23c6d21e15b289f2a9ebe66.patch"; - sha256 = "09ahvwyaqzqaa9gnpbffncs9574d20mfy30zz2ww67cmm8f2a8iv"; - }) - (fetchpatch { name = "gitit-fix-build-with-hoauth2-2.3.0.patch"; url = "https://github.com/jgm/gitit/commit/fd534c0155eef1790500c834e612ab22cf9b67b6.patch"; sha256 = "0hmlqkavn8hr0b4y4hxs1yyg0r79ylkzhzwy1dzbb3a2q86ydd2f"; }) - ] super.gitit; + ] (doJailbreak super.gitit); # Test suite requires database persistent-mysql = dontCheck super.persistent-mysql; @@ -1287,26 +1134,6 @@ self: super: { }) super.persistent-postgresql; - # Fix EdisonAPI and EdisonCore for GHC 8.8: - # https://github.com/robdockins/edison/pull/16 - EdisonAPI = appendPatch (fetchpatch { - url = "https://github.com/robdockins/edison/pull/16/commits/8da6c0f7d8666766e2f0693425c347c0adb492dc.patch"; - postFetch = '' - ${pkgs.buildPackages.patchutils}/bin/filterdiff --include='a/edison-api/*' --strip=1 "$out" > "$tmpfile" - mv "$tmpfile" "$out" - ''; - sha256 = "0yi5pz039lcm4pl9xnl6krqxyqq5rgb5b6m09w0sfy06x0n4x213"; - }) super.EdisonAPI; - - EdisonCore = appendPatch (fetchpatch { - url = "https://github.com/robdockins/edison/pull/16/commits/8da6c0f7d8666766e2f0693425c347c0adb492dc.patch"; - postFetch = '' - ${pkgs.buildPackages.patchutils}/bin/filterdiff --include='a/edison-core/*' --strip=1 "$out" > "$tmpfile" - mv "$tmpfile" "$out" - ''; - sha256 = "097wqn8hxsr50b9mhndg5pjim5jma2ym4ylpibakmmb5m98n17zp"; - }) super.EdisonCore; - # 2021-12-26: Too strict bounds on doctest polysemy-plugin = doJailbreak super.polysemy-plugin; @@ -1314,9 +1141,6 @@ self: super: { # upstream: https://github.com/obsidiansystems/which/pull/6 which = doJailbreak super.which; - # https://github.com/ocharles/weeder/issues/15 - weeder = doJailbreak super.weeder; - # 2022-09-20: We have overridden lsp to not be the stackage version. # dhall-lsp-server needs the older 1.4.0.0 lsp dhall-lsp-server = super.dhall-lsp-server.override { @@ -1325,32 +1149,40 @@ self: super: { }); }; - # Requested version bump on upstream https://github.com/obsidiansystems/constraints-extras/issues/32 - constraints-extras = doJailbreak super.constraints-extras; + jsaddle-webkit2gtk = overrideCabal (old: { + postPatch = old.postPatch or "" + '' + sed -i 's/bytestring.*0.11/bytestring/' jsaddle-webkit2gtk.cabal + ''; + }) super.jsaddle-webkit2gtk; - # Necessary for stack - # x509-validation test suite hangs: upstream https://github.com/vincenthz/hs-certificate/issues/120 - # tls test suite fails: upstream https://github.com/vincenthz/hs-tls/issues/434 - x509-validation = dontCheck super.x509-validation; - tls = dontCheck super.tls; # 2022-03-16: lens bound can be loosened https://github.com/ghcjs/jsaddle-dom/issues/19 jsaddle-dom = overrideCabal (old: { postPatch = old.postPatch or "" + '' sed -i 's/lens.*4.20/lens/' jsaddle-dom.cabal ''; - }) super.jsaddle-dom; + }) (doJailbreak super.jsaddle-dom); # Tests disabled and broken override needed because of missing lib chrome-test-utils: https://github.com/reflex-frp/reflex-dom/issues/392 # 2022-03-16: Pullrequest for ghc 9 compat https://github.com/reflex-frp/reflex-dom/pull/433 - reflex-dom-core = doDistribute (unmarkBroken (dontCheck - (appendPatch + reflex-dom-core = overrideCabal (old: { + postPatch = old.postPatch or "" + '' + sed -i 's/template-haskell.*2.17/template-haskell/' reflex-dom-core.cabal + ''; + }) + ((appendPatches [ (fetchpatch { - url = "https://github.com/reflex-frp/reflex-dom/compare/a0459deafd296656b3e99db01ea7f65b89b0948c...56fa8a484ccfc7d3365d07fea3caa430155dbcac.patch"; - sha256 = "sha256-azMF3uX7S1rKKRAVjY+xP2XbQKHvEY/9nU7cH81KKPA="; + url = "https://github.com/reflex-frp/reflex-dom/commit/1814640a14c6c30b1b2299e74d08fb6fcaadfb94.patch"; + sha256 = "sha256-QyX2MLd7Tk0M1s0DU0UV3szXs8ngz775i3+KI62Q3B8="; relative = "reflex-dom-core"; }) - super.reflex-dom-core))); + (fetchpatch { + url = "https://github.com/reflex-frp/reflex-dom/commit/56fa8a484ccfc7d3365d07fea3caa430155dbcac.patch"; + sha256 = "sha256-IogAYJZac17Bg99ZnnFX/7I44DAnHo2PRBWD0iVHbNA="; + relative = "reflex-dom-core"; + }) + ] + (doDistribute (unmarkBroken (dontCheck (doJailbreak super.reflex-dom-core)))))); # Tests disabled because they assume to run in the whole jsaddle repo and not the hackage tarbal of jsaddle-warp. jsaddle-warp = dontCheck super.jsaddle-warp; @@ -1371,7 +1203,7 @@ self: super: { # hasn't bumped upper bounds # test fails because of a "Warning: Unused LANGUAGE pragma" # https://github.com/ennocramer/monad-dijkstra/issues/4 - monad-dijkstra = dontCheck (doJailbreak super.monad-dijkstra); + monad-dijkstra = dontCheck super.monad-dijkstra; # Fixed upstream but not released to Hackage yet: # https://github.com/k0001/hs-libsodium/issues/2 @@ -1379,10 +1211,6 @@ self: super: { libraryToolDepends = (drv.libraryToolDepends or []) ++ [self.buildHaskellPackages.c2hs]; }) super.libsodium; - # Too strict version bounds on haskell-gi - gi-cairo-render = doJailbreak super.gi-cairo-render; - gi-cairo-connector = doJailbreak super.gi-cairo-connector; - svgcairo = appendPatches [ # Remove when https://github.com/gtk2hs/svgcairo/pull/12 goes in. (fetchpatch { @@ -1403,20 +1231,12 @@ self: super: { excludes = ["package.yaml" "stack.yaml" "stack.yaml.lock"]; }) super.espial; - # Missing -Iinclude parameter to doc-tests (pull has been accepted, so should be resolved when 0.5.3 released) - # https://github.com/lehins/massiv/pull/104 - massiv = dontCheck super.massiv; - # Upstream PR: https://github.com/jkff/splot/pull/9 splot = appendPatch (fetchpatch { url = "https://github.com/jkff/splot/commit/a6710b05470d25cb5373481cf1cfc1febd686407.patch"; sha256 = "1c5ck2ibag2gcyag6rjivmlwdlp5k0dmr8nhk7wlkzq2vh7zgw63"; }) super.splot; - # Tests are broken because of missing files in hackage tarball. - # https://github.com/jgm/commonmark-hs/issues/55 - commonmark-extensions = dontCheck super.commonmark-extensions; - # Fails with encoding problems, likely needs locale data. # Test can be executed by adding which to testToolDepends and # $PWD/dist/build/haskeline-examples-Test to $PATH. @@ -1426,12 +1246,6 @@ self: super: { # https://github.com/nikita-volkov/stm-containers/issues/29 stm-containers = doJailbreak super.stm-containers; - # https://github.com/agrafix/Spock/issues/180 - # Ignore Stackage LTS bound so we can compile Spock-core again. All other - # reverse dependencies of reroute are marked as broken in nixpkgs, so - # upgrading reroute is probably unproblematic. - reroute = doDistribute self.reroute_0_7_0_0; - # Test suite fails to compile https://github.com/agrafix/Spock/issues/177 Spock = dontCheck super.Spock; @@ -1491,9 +1305,6 @@ self: super: { ekg-core = self.hasura-ekg-core; }); - # https://github.com/bos/statistics/issues/170 - statistics = dontCheck super.statistics; - hcoord = overrideCabal (drv: { # Remove when https://github.com/danfran/hcoord/pull/8 is merged. patches = [ @@ -1511,24 +1322,20 @@ self: super: { # So let's not go there and just disable the tests altogether. hspec-core = dontCheck super.hspec-core; + # tests seem to require a different version of hspec-core + hspec-contrib = dontCheck super.hspec-contrib; + # github.com/ucsd-progsys/liquidhaskell/issues/1729 liquidhaskell = super.liquidhaskell.override { Diff = self.Diff_0_3_4; }; Diff_0_3_4 = dontCheck super.Diff_0_3_4; - # jailbreaking pandoc-crossref because it has not bumped its upper bound on pandoc - # https://github.com/lierdakil/pandoc-crossref/issues/350 - pandoc-crossref = doJailbreak super.pandoc-crossref; - # The test suite attempts to read `/etc/resolv.conf`, which doesn't work in the sandbox. domain-auth = dontCheck super.domain-auth; - # Too tight version bounds, see https://github.com/haskell-hvr/microaeson/pull/4 - microaeson = doJailbreak super.microaeson; - # - Deps are required during the build for testing and also during execution, # so add them to build input and also wrap the resulting binary so they're in # PATH. - # - Patch can be removed on next package set bump + # - Patch can be removed on next package set bump (for v0.2.11) update-nix-fetchgit = let deps = [ pkgs.git pkgs.nix pkgs.nix-prefetch-git ]; in self.generateOptparseApplicativeCompletions [ "update-nix-fetchgit" ] (overrideCabal (drv: { @@ -1538,18 +1345,7 @@ self: super: { lib.makeBinPath deps }" ''; - }) (addTestToolDepends deps ( - appendPatch (fetchpatch { - url = "https://github.com/expipiplus1/update-nix-fetchgit/commit/2a4229b04aaeec025f1400a39f4e6390af760b54.patch"; - sha256 = "sha256-G3abFWykpvtsh8l3GZhkNUpBo7zRb9Ve4d6mjizysIo="; - includes = [ "src/Update/Nix/FetchGit/Prefetch.hs" ]; - }) - super.update-nix-fetchgit))); - - - # Our quickcheck-instances is too old for the newer binary-instances, but - # quickcheck-instances is only used in the tests of binary-instances. - binary-instances = dontCheck super.binary-instances; + }) (addTestToolDepends deps super.update-nix-fetchgit)); # Raise version bounds: https://github.com/idontgetoutmuch/binary-low-level/pull/16 binary-strict = appendPatches [ @@ -1563,11 +1359,7 @@ self: super: { dontCheck (disableCabalFlag "stan") # Sorry stan is totally unmaintained and terrible to get to run. It only works on ghc 8.8 or 8.10 anyways … ]).overrideScope (lself: lsuper: { - ormolu = doJailbreak lself.ormolu_0_5_0_1; - fourmolu = doJailbreak lself.fourmolu_0_9_0_0; - hlint = enableCabalFlag "ghc-lib" lself.hlint_3_4_1; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - ghc-lib-parser = lself.ghc-lib-parser_9_2_5_20221107; + hlint = enableCabalFlag "ghc-lib" lsuper.hlint; # For most ghc versions, we overrideScope Cabal in the configuration-ghc-???.nix, # because some packages, like ormolu, need a newer Cabal version. # ghc-paths is special because it depends on Cabal for building @@ -1580,21 +1372,13 @@ self: super: { ghc-paths = lsuper.ghc-paths.override { Cabal = null; }; }); - hledger_1_27_1 = doDistribute (super.hledger_1_27_1.override { - hledger-lib = self.hledger-lib_1_27_1; - }); - hls-hlint-plugin = super.hls-hlint-plugin.overrideScope (lself: lsuper: { # For "ghc-lib" flag see https://github.com/haskell/haskell-language-server/issues/3185#issuecomment-1250264515 - hlint = enableCabalFlag "ghc-lib" lself.hlint_3_4_1; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - ghc-lib-parser = lself.ghc-lib-parser_9_2_5_20221107; + hlint = enableCabalFlag "ghc-lib" lsuper.hlint; }); # For -f-auto see cabal.project in haskell-language-server. - ghc-lib-parser-ex_9_2_0_4 = disableCabalFlag "auto" (super.ghc-lib-parser-ex_9_2_0_4.override { - ghc-lib-parser = self.ghc-lib-parser_9_2_5_20221107; - }); + ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser (disableCabalFlag "auto" super.ghc-lib-parser-ex); # 2021-05-08: Tests fail: https://github.com/haskell/haskell-language-server/issues/1809 hls-eval-plugin = dontCheck super.hls-eval-plugin; @@ -1611,39 +1395,19 @@ self: super: { # 2021-11-20: https://github.com/haskell/haskell-language-server/pull/2374 hls-module-name-plugin = dontCheck super.hls-module-name-plugin; - # 2021-11-20: Testsuite hangs. - # https://github.com/haskell/haskell-language-server/issues/2375 - hls-pragmas-plugin = dontCheck super.hls-pragmas-plugin; - # 2022-09-19: https://github.com/haskell/haskell-language-server/issues/3200 hls-refactor-plugin = dontCheck super.hls-refactor-plugin; # 2022-11-18: https://github.com/haskell/haskell-language-server/commit/c1a7527c4fb348bee6093d9794b7d3e0c8d563f2 hls-fourmolu-plugin = assert super.hls-fourmolu-plugin.version == "1.1.0.0"; doJailbreak super.hls-fourmolu-plugin; - # 2022-10-27: implicit-hie 0.1.3.0 needs a newer version of Cabal-syntax. - implicit-hie = super.implicit-hie.override { - Cabal-syntax = self.Cabal-syntax_3_8_1_0; - }; - - # 2021-03-21: Test hangs - # https://github.com/haskell/haskell-language-server/issues/1562 - # 2021-11-13: Too strict upper bound on implicit-hie-cradle - ghcide = doJailbreak (dontCheck super.ghcide); - - data-tree-print = doJailbreak super.data-tree-print; + # tests require network + ghcide = dontCheck super.ghcide; # 2020-11-15: nettle tests are pre MonadFail change # https://github.com/stbuehler/haskell-nettle/issues/10 nettle = dontCheck super.nettle; - # 2020-11-17: Disable tests for hackage-security because of this issue: - # https://github.com/haskell/hackage-security/issues/247 - hackage-security = dontCheck super.hackage-security; - - # 2020-11-17: persistent-test is ahead of the persistent version in stack - persistent-sqlite = dontCheck super.persistent-sqlite; - # The tests for semver-range need to be updated for the MonadFail change in # ghc-8.8: # https://github.com/adnelson/semver-range/issues/15 @@ -1652,24 +1416,8 @@ self: super: { # https://github.com/obsidiansystems/dependent-sum/issues/55 dependent-sum = doJailbreak super.dependent-sum; - # 2022-03-16 upstream is not updating bounds: https://github.com/srid/rib/issues/169 - rib-core = doJailbreak (super.rib-core.override { relude = doJailbreak super.relude_0_7_0_0; }); - neuron = assert super.neuron.version == "1.0.0.0"; overrideCabal { - # neuron is soon to be deprecated - # Fixing another ghc 9.0 bug here - postPatch = '' - sed -i 's/asks routeConfigRouteLink/asks (\\x -> routeConfigRouteLink x)/' src/lib/Neuron/Web/Route.hs - ''; - } - (doJailbreak (super.neuron.override { - clay = dontCheck self.clay_0_13_3; - relude = doJailbreak self.relude_0_7_0_0; - })); - - reflex-dom-pandoc = super.reflex-dom-pandoc.override { clay = dontCheck self.clay_0_13_3; }; - # 2022-06-19: Disable checks because of https://github.com/reflex-frp/reflex/issues/475 - reflex = dontCheck super.reflex; + reflex = doJailbreak (dontCheck super.reflex); # 2020-11-19: jailbreaking because of pretty-simple bound out of date # https://github.com/kowainik/stan/issues/408 @@ -1684,35 +1432,22 @@ self: super: { (self.generateOptparseApplicativeCompletions [ "hi" ] (super.hinit.override { haskeline = self.haskeline_0_8_2; })); - # 2022-03-19: Keeping jailbreak because of tons of strict bounds: https://github.com/snapframework/snap/issues/220 - snap = doJailbreak super.snap; - - # 2020-11-23: Jailbreaking until: https://github.com/michaelt/text-pipes/pull/29 - pipes-text = doJailbreak super.pipes-text; - # 2020-11-23: https://github.com/Rufflewind/blas-hs/issues/8 blas-hs = dontCheck super.blas-hs; - # 2020-11-23: https://github.com/cdornan/fmt/issues/30 - fmt = dontCheck super.fmt; - - # 2020-11-27: Tests broken - # Upstream issue: https://github.com/haskell-servant/servant-swagger/issues/129 - servant-swagger = dontCheck super.servant-swagger; - # Strange doctest problems # https://github.com/biocad/servant-openapi3/issues/30 servant-openapi3 = dontCheck super.servant-openapi3; # Give hspec 2.10.* correct dependency versions without overrideScope - hspec_2_10_6 = doDistribute (super.hspec_2_10_6.override { - hspec-discover = self.hspec-discover_2_10_6; - hspec-core = self.hspec-core_2_10_6; + hspec_2_10_7 = doDistribute (super.hspec_2_10_7.override { + hspec-discover = self.hspec-discover_2_10_7; + hspec-core = self.hspec-core_2_10_7; }); - hspec-discover_2_10_6 = super.hspec-discover_2_10_6.override { + hspec-discover_2_10_7 = super.hspec-discover_2_10_7.override { hspec-meta = self.hspec-meta_2_10_5; }; - hspec-core_2_10_6 = super.hspec-core_2_10_6.override { + hspec-core_2_10_7 = super.hspec-core_2_10_7.override { hspec-meta = self.hspec-meta_2_10_5; }; @@ -1727,11 +1462,13 @@ self: super: { hercules-ci-agent = lib.pipe super.hercules-ci-agent [ (appendPatches [ - # https://github.com/hercules-ci/hercules-ci-agent/pull/446 - (fetchpatch { - url = "https://github.com/hercules-ci/hercules-ci-agent/commit/99afac77ddb84122a5321494a08e6fe2e95548a1.patch"; - sha256 = "sha256-0dtmNL1rqzeXvXWinfANc57a5LIM3uNnhR3A+p8mH0A="; + # haskell-updates branch, will be merged in 0.9.10 + (fetchpatch2 { + name = "hercules-ci-agent-cachix-1.1"; + url = "https://github.com/hercules-ci/hercules-ci-agent/commit/b76d888548da37a96ae47f1be871de6605d38edd.patch"; + sha256 = "sha256-kqEkDHbatcYS8LuQlGV/1j/6LXWviQoDQAHDr6DBbDU="; stripLen = 1; + includes = [ "*.hs" ]; }) ]) (self.generateOptparseApplicativeCompletions [ "hercules-ci-agent" ]) @@ -1766,6 +1503,10 @@ self: super: { }) ] super.pipes-aeson; + # Needs bytestring 0.11 + # https://github.com/Gabriella439/Haskell-Pipes-HTTP-Library/pull/17 + pipes-http = doJailbreak super.pipes-http; + moto-postgresql = appendPatches [ # https://gitlab.com/k0001/moto/-/merge_requests/3 (fetchpatch { @@ -1798,9 +1539,6 @@ self: super: { # 2020-12-06: Restrictive upper bounds w.r.t. pandoc-types (https://github.com/owickstrom/pandoc-include-code/issues/27) pandoc-include-code = doJailbreak super.pandoc-include-code; - # https://github.com/yesodweb/yesod/issues/1714 - yesod-core = dontCheck super.yesod-core; - # DerivingVia is not allowed in safe Haskell # https://github.com/strake/util.hs/issues/1 util = appendConfigureFlags [ @@ -1817,36 +1555,12 @@ self: super: { ] super.alg; # Break out of overspecified constraint on QuickCheck. - algebraic-graphs = dontCheck super.algebraic-graphs; - attoparsec = doJailbreak super.attoparsec; # https://github.com/haskell/attoparsec/pull/168 - cassava = doJailbreak super.cassava; filepath-bytestring = doJailbreak super.filepath-bytestring; - ghc-source-gen = doJailbreak super.ghc-source-gen; haddock-library = doJailbreak super.haddock-library; - HsYAML = doJailbreak super.HsYAML; - http-api-data = doJailbreak super.http-api-data; - lzma = doJailbreak super.lzma; - psqueues = doJailbreak super.psqueues; - - # Break out of overspecified constraint on QuickCheck. - # https://github.com/Gabriel439/Haskell-Nix-Derivation-Library/pull/10 - nix-derivation = doJailbreak super.nix-derivation; - - # Break out of overspecified constraint on QuickCheck. - # Fixed by https://github.com/haskell-servant/servant/commit/08579ca0039410e04d6c36c975ddc20165819db6 - servant-client = doJailbreak super.servant-client; - servant-client-core = doJailbreak super.servant-client-core; - # overly strict dependency on aeson - # https://github.com/jaspervdj/profiteur/issues/33 - profiteur = doJailbreak super.profiteur; - - # Test suite has overly strict bounds on tasty. + # Test suite has overly strict bounds on tasty, jailbreaking fails. # https://github.com/input-output-hk/nothunks/issues/9 - nothunks = doJailbreak super.nothunks; - - # Allow building with recent versions of tasty. - lukko = doJailbreak super.lukko; + nothunks = dontCheck super.nothunks; # Allow building with older versions of http-client. http-client-restricted = doJailbreak super.http-client-restricted; @@ -1909,7 +1623,8 @@ self: super: { # Test suite has a too strict bound on base # https://github.com/jswebtools/language-ecmascript/pull/88 - language-ecmascript = doJailbreak super.language-ecmascript; + # Test suite doesn't compile anymore + language-ecmascript = dontCheck (doJailbreak super.language-ecmascript); # Too strict bounds on containers # https://github.com/jswebtools/language-ecmascript-analysis/issues/1 @@ -1937,27 +1652,25 @@ self: super: { ] super.nix-thunk; # list `modbus` in librarySystemDepends, correct to `libmodbus` - libmodbus = overrideCabal (drv: { - librarySystemDepends = [ pkgs.libmodbus ]; - }) super.libmodbus; + libmodbus = doJailbreak (addExtraLibrary pkgs.libmodbus super.libmodbus); # 2021-04-02: Outdated optparse-applicative bound is fixed but not realeased on upstream. trial-optparse-applicative = assert super.trial-optparse-applicative.version == "0.0.0.0"; doJailbreak super.trial-optparse-applicative; # 2021-04-02: iCalendar is basically unmaintained. - # There are PRs for bumping the bounds: https://github.com/chrra/iCalendar/pull/46 - iCalendar = overrideCabal { - # Overriding bounds behind a cabal flag - preConfigure = ''substituteInPlace iCalendar.cabal --replace "network >=2.6 && <2.7" "network -any"''; - } (doJailbreak super.iCalendar); - - # Apply patch from master relaxing the version bounds on tasty. - # Can be removed at next release (current is 0.10.1.0). - ginger = appendPatch + # There is a PR for fixing the build: https://github.com/chrra/iCalendar/pull/50 + iCalendar = appendPatches [ (fetchpatch { - url = "https://github.com/tdammers/ginger/commit/bd8cb39c1853d4fb4f663c4c201884575906acea.patch"; - sha256 = "1rdy53k0384g52bnc59j1f0i13hr4lbnbksfsabr4av6zmw9wmzf"; - }) super.ginger; + url = "https://github.com/chrra/iCalendar/commit/66b408f10b2d87929ecda715109b26093c711823.patch"; + sha256 = "sha256-MU5OHUx3L8CaX+xAmoQhAAOMxT7u9Xk1OcOaUHBwK3Y="; + }) + (fetchpatch { + url = "https://github.com/chrra/iCalendar/commit/76f5d2e8328cb985f1ee5176e86a5cdd05a17934.patch"; + sha256 = "sha256-Z5V8VTA5Ml9YIRANQn2aD7dljAbR9dq13N11Y3LZdoE="; + }) + ] super.iCalendar; + + ginger = doJailbreak super.ginger; # Too strict version bounds on cryptonite # https://github.com/obsidiansystems/haveibeenpwned/issues/7 @@ -1967,10 +1680,6 @@ self: super: { # https://github.com/mpickering/hs-speedscope/issues/16 hs-speedscope = doJailbreak super.hs-speedscope; - # Too strict version bounds on tasty - # Can likely be removed next week (2021-04-09) when 1.1.1.1 is released. - fused-effects = doJailbreak super.fused-effects; - # Test suite doesn't support base16-bytestring >= 1.0 # https://github.com/centromere/blake2/issues/6 blake2 = dontCheck super.blake2; @@ -2048,6 +1757,7 @@ self: super: { postPatch = '' sed -i 's/ref-tf.*,/ref-tf,/' jsaddle.cabal sed -i 's/attoparsec.*,/attoparsec,/' jsaddle.cabal + sed -i 's/time.*,/time,/' jsaddle.cabal sed -i 's/(!name)/(! name)/' src/Language/Javascript/JSaddle/Object.hs '' + (drv.postPatch or ""); }) (doJailbreak super.jsaddle); @@ -2097,10 +1807,12 @@ self: super: { gi-gtk-declarative = doJailbreak super.gi-gtk-declarative; gi-gtk-declarative-app-simple = doJailbreak super.gi-gtk-declarative-app-simple; - # 2022-01-16 haskell-ci needs Cabal 3.6, ShellCheck 0.7.2 - haskell-ci = super.haskell-ci.overrideScope (self: super: { + # 2022-01-16 haskell-ci needs Cabal 3.6 + haskell-ci = (appendPatches [ + # Allow building with optparse-applicative 0.17* and ShellCheck 0.8.0 + ./patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch + ] super.haskell-ci).overrideScope (self: super: { Cabal = self.Cabal_3_6_3_0; - ShellCheck = self.ShellCheck_0_7_2; cabal-install-parsers = self.cabal-install-parsers_0_4_5; }); @@ -2142,14 +1854,6 @@ self: super: { network = self.network-bsd; }); - # 2021-05-14: Testsuite is failing. - # https://github.com/kcsongor/generic-lens/issues/133 - generic-optics = dontCheck super.generic-optics; - - # Too strict bound on random - # https://github.com/haskell-hvr/missingh/issues/56 - MissingH = doJailbreak super.MissingH; - # Disable flaky tests # https://github.com/DavidEichmann/alpaca-netcode/issues/2 alpaca-netcode = overrideCabal { @@ -2164,10 +1868,6 @@ self: super: { testFlags = [ "-j1" ]; } super.libarchive; - # unrestrict bounds for hashable and semigroups - # https://github.com/HeinrichApfelmus/reactive-banana/issues/215 - reactive-banana = doJailbreak super.reactive-banana; - # Too strict bounds on QuickCheck # https://github.com/muesli4/table-layout/issues/16 table-layout = doJailbreak super.table-layout; @@ -2179,12 +1879,6 @@ self: super: { # https://github.com/plow-technologies/hspec-golden-aeson/issues/17 hspec-golden-aeson = dontCheck super.hspec-golden-aeson; - # 2022-03-21: Newest stylish-haskell needs ghc-lib-parser-9_2 - stylish-haskell = (super.stylish-haskell.override { - ghc-lib-parser = self.ghc-lib-parser_9_2_5_20221107; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - }); - # To strict bound on hspec # https://github.com/dagit/zenc/issues/5 zenc = doJailbreak super.zenc; @@ -2196,7 +1890,7 @@ self: super: { assert super.graphql.version == "1.0.3.0"; appendConfigureFlags [ "-f-json" - ] (lib.warnIf (lib.versionAtLeast self.hspec.version "2.9.0") "@NixOS/haskell: Remove jailbreak for graphql" doJailbreak super.graphql); + ] super.graphql; # https://github.com/ajscholl/basic-cpuid/pull/1 basic-cpuid = appendPatch (fetchpatch { @@ -2222,16 +1916,6 @@ self: super: { # https://github.com/haskell/haskell-language-server/pull/2887 hls-change-type-signature-plugin = dontCheck super.hls-change-type-signature-plugin; - # Too strict bounds on hspec - # https://github.com/haskell-works/hw-hspec-hedgehog/issues/62 - # https://github.com/haskell-works/hw-prim/issues/132 - # https://github.com/haskell-works/hw-ip/issues/107 - # https://github.com/haskell-works/bits-extra/issues/57 - hw-hspec-hedgehog = doJailbreak super.hw-hspec-hedgehog; - hw-prim = doJailbreak super.hw-prim; - hw-ip = doJailbreak super.hw-ip; - bits-extra = doJailbreak super.bits-extra; - # Fixes https://github.com/NixOS/nixpkgs/issues/140613 # https://github.com/recursion-schemes/recursion-schemes/issues/128 recursion-schemes = overrideCabal (drv: { @@ -2266,13 +1950,15 @@ self: super: { # Upgrade of unordered-containers in Stackage causes ordering-sensitive test to fail # https://github.com/commercialhaskell/stackage/issues/6366 # https://github.com/kapralVV/Unique/issues/9 + # Too strict bounds on hashable + # https://github.com/kapralVV/Unique/pull/10 Unique = assert super.Unique.version == "0.4.7.9"; overrideCabal (drv: { testFlags = [ "--skip" "/Data.List.UniqueUnsorted.removeDuplicates/removeDuplicates: simple test/" "--skip" "/Data.List.UniqueUnsorted.repeatedBy,repeated,unique/unique: simple test/" "--skip" "/Data.List.UniqueUnsorted.repeatedBy,repeated,unique/repeatedBy: simple test/" ] ++ drv.testFlags or []; - }) super.Unique; + }) (doJailbreak super.Unique); # https://github.com/AndrewRademacher/aeson-casing/issues/8 aeson-casing = assert super.aeson-casing.version == "0.2.0.0"; overrideCabal (drv: { @@ -2281,23 +1967,6 @@ self: super: { ] ++ drv.testFlags or []; }) super.aeson-casing; - # 2020-11-19: Jailbreaking until: https://github.com/snapframework/heist/pull/124 - # 2021-12-22: https://github.com/snapframework/heist/issues/131 - heist = assert super.heist.version == "1.1.0.1"; - # aeson 2.0 compat https://github.com/snapframework/heist/pull/132 - # not merged in master yet - appendPatch (fetchpatch { - url = "https://github.com/snapframework/heist/compare/de802b0ed5055bd45cfed733524b4086c7e71660...d76adf749d14d7401963d36a22597584c52fc55f.patch"; - sha256 = "sha256-GEIPGYYJO6S4t710AQe1uk3EvBu4UpablrlMDZLBSTk="; - includes = [ "src/*" "heist.cabal"]; - }) - (overrideCabal (drv: { - revision = null; - editedCabalFile = null; - doCheck = false; - }) - (doJailbreak super.heist)); - # https://github.com/emc2/HUnit-Plus/issues/26 HUnit-Plus = dontCheck super.HUnit-Plus; # https://github.com/ewestern/haskell-postgis/issues/7 @@ -2397,23 +2066,6 @@ self: super: { # https://github.com/kuribas/mfsolve/issues/8 mfsolve = dontCheck super.mfsolve; - # GHC 9 support https://github.com/lambdabot/lambdabot/pull/204 - lambdabot-core = appendPatch ./patches/lambdabot-core-ghc9.patch (overrideCabal (drv: { - revision = null; - editedCabalFile = null; - }) super.lambdabot-core); - lambdabot-novelty-plugins = appendPatch ./patches/lambdabot-novelty-plugins-ghc9.patch super.lambdabot-novelty-plugins; - - # Ships a custom cabal-doctest Setup.hs in the release tarball, but the actual - # test suite is commented out, so the required dependency is missing naturally. - # We need to use a default Setup.hs instead. Current master doesn't exhibit - # this anymore, so this override should be fine to remove once the assert fires. - linear-base = assert super.linear-base.version == "0.1.0"; overrideCabal (drv: { - preCompileBuildDriver = drv.preCompileBuildDriver or "" + '' - rm Setup.hs - ''; - }) super.linear-base; - # https://github.com/peti/hopenssl/issues/5 hopenssl = super.hopenssl.override { openssl = pkgs.openssl_1_1; }; @@ -2481,7 +2133,8 @@ self: super: { system-fileio = doJailbreak super.system-fileio; # Bounds too strict on base and ghc-prim: https://github.com/tibbe/ekg-core/pull/43 (merged); waiting on hackage release - ekg-core = assert super.ekg-core.version == "0.1.1.7"; doJailbreak super.ekg-core; + ekg-core = assert super.ekg-core.version == "0.1.1.7"; doJailbreak super.ekg-core; + hasura-ekg-core = doJailbreak super.hasura-ekg-core; # https://github.com/Synthetica9/nix-linter/issues/65 nix-linter = super.nix-linter.overrideScope (self: super: { @@ -2528,6 +2181,13 @@ self: super: { }) super.polynomial); + # Unreleased bound relaxing patch allowing scotty 0.12 + taffybar = appendPatch (pkgs.fetchpatch { + name = "taffybar-allow-scotty-0.12.patch"; + url = "https://github.com/taffybar/taffybar/commit/2e428ba550fc51067526a0350b91185acef72d19.patch"; + sha256 = "1lpcz671mk5cwqffjfi9ncc0d67bmwgzypy3i37a2fhfmxd0y3nl"; + }) ((p: assert p.version == "4.0.0"; p) super.taffybar); + # lucid-htmx has restrictive upper bounds on lucid and servant: # # Setup: Encountered missing or private dependencies: @@ -2552,6 +2212,9 @@ self: super: { doctest-parallel = dontCheck super.doctest-parallel; clash-prelude = dontCheck super.clash-prelude; + # Too strict upper bound on th-desugar, fixed in 3.1.1 + singletons-th = assert super.singletons-th.version == "3.1"; doJailbreak super.singletons-th; + # Ships a broken Setup.hs # https://github.com/lehins/conduit-aeson/issues/1 conduit-aeson = overrideCabal (drv: { @@ -2575,82 +2238,131 @@ self: super: { # https://github.com/phadej/crypt-sha512/issues/13 crypt-sha512 = dontCheck super.crypt-sha512; -} // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super // (let - # We need to build purescript with these dependencies and thus also its reverse - # dependencies to avoid version mismatches in their dependency closure. - # TODO(@cdepillabout): maybe unify with the spago overlay in configuration-nix.nix? - purescriptOverlay = self: super: { - # As of 2021-11-08, the latest release of `language-javascript` is 0.7.1.0, - # but it has a problem with parsing the `async` keyword. It doesn't allow - # `async` to be used as an object key: - # https://github.com/erikd/language-javascript/issues/131 - language-javascript = self.language-javascript_0_7_0_0; - }; - - # Don't support GHC >= 9.0 yet and need aeson 1.5.* - purescriptStOverride = drv: - let - overlayed = drv.overrideScope ( - lib.composeExtensions - purescriptOverlay - (self: super: { - aeson = self.aeson_1_5_6_0; - }) - ); - in - if lib.versionAtLeast self.ghc.version "9.0" - then dontDistribute (markBroken overlayed) - else overlayed; -in { - purescript = - lib.pipe - (super.purescript.overrideScope purescriptOverlay) - ([ - # PureScript uses nodejs to run tests, so the tests have been disabled - # for now. If someone is interested in figuring out how to get this - # working, it seems like it might be possible. - dontCheck - # The current version of purescript (0.14.5) has version bounds for LTS-17, - # but it compiles cleanly using deps in LTS-18 as well. This jailbreak can - # likely be removed when purescript-0.14.6 is released. - doJailbreak - # Generate shell completions - (self.generateOptparseApplicativeCompletions [ "purs" ]) - ] ++ lib.optionals (lib.versions.majorMinor self.ghc.version == "9.2") [ - markUnbroken - doDistribute - ]); - - purescript-cst = purescriptStOverride super.purescript-cst; - - purescript-ast = purescriptStOverride super.purescript-ast; - - purenix = purescriptStOverride super.purenix; - - # Needs update for ghc-9: - # https://github.com/haskell/text-format/issues/27 - text-format = appendPatch (fetchpatch { - url = "https://github.com/hackage-trustees/text-format/pull/4/commits/949383aa053497b8c251219c10506136c29b4d32.patch"; - sha256 = "QzpZ7lDedsz1mZcq6DL4x7LBnn58rx70+ZVvPh9shRo="; - }) super.text-format; - - # 2022-10-04: Needs newer tasty-dejafu than (currently) in stackage - rec-def = super.rec-def.override { tasty-dejafu = self.tasty-dejafu_2_1_0_0; }; + # Too strict upper bound on HTTP + oeis = doJailbreak super.oeis; + + inherit + (let + # We need to build purescript with these dependencies and thus also its reverse + # dependencies to avoid version mismatches in their dependency closure. + # TODO(@cdepillabout): maybe unify with the spago overlay in configuration-nix.nix? + purescriptOverlay = self: super: { + # As of 2021-11-08, the latest release of `language-javascript` is 0.7.1.0, + # but it has a problem with parsing the `async` keyword. It doesn't allow + # `async` to be used as an object key: + # https://github.com/erikd/language-javascript/issues/131 + language-javascript = self.language-javascript_0_7_0_0; + }; + in { + purescript = + lib.pipe + (super.purescript.overrideScope purescriptOverlay) + ([ + # PureScript uses nodejs to run tests, so the tests have been disabled + # for now. If someone is interested in figuring out how to get this + # working, it seems like it might be possible. + dontCheck + # The current version of purescript (0.14.5) has version bounds for LTS-17, + # but it compiles cleanly using deps in LTS-18 as well. This jailbreak can + # likely be removed when purescript-0.14.6 is released. + doJailbreak + # Generate shell completions + (self.generateOptparseApplicativeCompletions [ "purs" ]) + ]); + + purenix = super.purenix.overrideScope purescriptOverlay; + }) + purescript + purenix + ; # 2022-11-05: https://github.com/ysangkok/haskell-tzdata/issues/3 tzdata = dontCheck super.tzdata; - # 2022-11-04: The situation around heist-emanote is quite terrible. - # It‘s simply a heist fork because heist is unmaintained. - # Upstream jailbreak is unreleased: https://github.com/srid/heist/commit/988692ea850b3cbe966c7dc4dd26ba1d49647706 - heist-emanote = doJailbreak (dontCheck super.heist-emanote); - # 2022-11-15: Needs newer witch package and brick 1.3 which in turn works with text-zipper 0.12 # Other dependencies are resolved with doJailbreak for both swarm and brick_1_3 swarm = doJailbreak (super.swarm.override { - witch = super.witch_1_1_2_0; - brick = doJailbreak (dontCheck (super.brick_1_3.override { - text-zipper = super.text-zipper_0_12; - })); + brick = doJailbreak (dontCheck super.brick_1_3); }); -}) + + # random <1.2 + unfoldable = doJailbreak super.unfoldable; + + # containers <0.6, semigroupoids <5.3 + data-lens = doJailbreak super.data-lens; + + # transformers <0.3 + monads-fd = doJailbreak super.monads-fd; + + # HTF <0.15 + cases = doJailbreak super.cases; + + # exceptions <0.9 + eprocess = doJailbreak super.eprocess; + + # hashable <1.4, mmorph <1.2 + composite-aeson = doJailbreak super.composite-aeson; + + # composite-aeson <0.8, composite-base <0.8 + compdoc = doJailbreak super.compdoc; + + # composite-aeson <0.8, composite-base <0.8 + haskell-coffee = doJailbreak super.haskell-coffee; + + # Test suite doesn't compile anymore + twitter-types = dontCheck super.twitter-types; + + # base <4.14 + numbered-semigroups = doJailbreak super.numbered-semigroups; + + # Tests open file "data/test_vectors_aserti3-2d_run01.txt" but it doesn't exist + haskoin-core = dontCheck super.haskoin-core; + + # base <4.9, transformers <0.5 + MonadCatchIO-transformers = doJailbreak super.MonadCatchIO-transformers; + + # unix-compat <0.5 + hxt-cache = doJailbreak super.hxt-cache; + + # base <4.16 + fast-builder = doJailbreak super.fast-builder; + + # QuickCheck <2.14 + term-rewriting = doJailbreak super.term-rewriting; + + # tests can't find the test binary anymore - parseargs-example + parseargs = dontCheck super.parseargs; + + # base <4.14 + decimal-literals = doJailbreak super.decimal-literals; + + # multiple bounds too strict + snaplet-sqlite-simple = doJailbreak super.snaplet-sqlite-simple; + + emanote = super.emanote.overrideScope (lself: lsuper: { + commonmark-extensions = lself.commonmark-extensions_0_2_3_2; + }); + + # doctest <0.19 + polysemy = doJailbreak super.polysemy; + + # multiple bounds too strict + co-log-polysemy = doJailbreak super.co-log-polysemy; + co-log-polysemy-formatting = doJailbreak super.co-log-polysemy-formatting; + + # 2022-12-02: Needs newer postgrest package + # 2022-12-02: Hackage release lags behind actual releases: https://github.com/PostgREST/postgrest/issues/2275 + # 2022-12-02: Too strict bounds: https://github.com/PostgREST/postgrest/issues/2580 + # 2022-12-02: Tests require running postresql server + postgrest = dontCheck (doJailbreak (overrideSrc rec { + version = "10.1.1"; + src = pkgs.fetchFromGitHub { + owner = "PostgREST"; + repo = "postgrest"; + rev = "v${version}"; + sha256 = "sha256-ceSPBH+lzGU1OwjolcaE1BCpkKCJrvMU5G8TPeaJesM="; + }; + } super.postgrest)); + + html-charset = dontCheck super.html-charset; +} // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super diff --git a/pkgs/development/haskell-modules/configuration-darwin.nix b/pkgs/development/haskell-modules/configuration-darwin.nix index 5ad58d156300a..11a6bc1fdfb21 100644 --- a/pkgs/development/haskell-modules/configuration-darwin.nix +++ b/pkgs/development/haskell-modules/configuration-darwin.nix @@ -301,12 +301,12 @@ self: super: ({ # Build segfaults unless `fixity-th` is disabled. # https://github.com/tweag/ormolu/issues/927 - ormolu_0_5_0_1 = overrideCabal (drv: { + ormolu = overrideCabal (drv: { libraryHaskellDepends = drv.libraryHaskellDepends ++ [ self.file-embed ]; - }) (disableCabalFlag "fixity-th" super.ormolu_0_5_0_1); - fourmolu_0_9_0_0 = overrideCabal (drv: { + }) (disableCabalFlag "fixity-th" super.ormolu); + fourmolu = overrideCabal (drv: { libraryHaskellDepends = drv.libraryHaskellDepends ++ [ self.file-embed ]; - }) (disableCabalFlag "fixity-th" super.fourmolu_0_9_0_0); + }) (disableCabalFlag "fixity-th" super.fourmolu); } // lib.optionalAttrs pkgs.stdenv.isx86_64 { # x86_64-darwin diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix index 1a578dbafbdf0..c11070d21fafe 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix @@ -53,6 +53,9 @@ self: super: { Cabal = self.Cabal_3_8_1_0; Cabal-syntax = self.Cabal-syntax_3_8_1_0; process = self.process_1_6_16_0; + # Prevent dependency on doctest which causes an inconsistent dependency + # due to depending on ghc-8.10.7 (with bundled process) vs. process 1.6.16.0 + vector = dontCheck super.vector; }); cabal-install-solver = super.cabal-install-solver.overrideScope (self: super: { Cabal = self.Cabal_3_8_1_0; @@ -60,8 +63,11 @@ self: super: { process = self.process_1_6_16_0; }); + # Additionally depends on OneTuple for GHC < 9.0 + base-compat-batteries = addBuildDepend self.OneTuple super.base-compat-batteries; + # Pick right versions for GHC-specific packages - ghc-api-compat = doDistribute self.ghc-api-compat_8_10_7; + ghc-api-compat = doDistribute (unmarkBroken self.ghc-api-compat_8_10_7); # ghc versions which don‘t match the ghc-lib-parser-ex version need the # additional dependency to compile successfully. @@ -96,17 +102,36 @@ self: super: { executableHaskellDepends = drv.executableToolDepends or [] ++ [ self.repline ]; }) super.hnix); - haskell-language-server = addBuildDepend self.hls-brittany-plugin (super.haskell-language-server.overrideScope (lself: lsuper: { + haskell-language-server = let + # These aren't included in hackage-packages.nix because hackage2nix is configured for GHC 9.2, under which these plugins aren't supported. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self.<package>.scope` + additionalDeps = with self.haskell-language-server.scope; [ + hls-brittany-plugin + hls-haddock-comments-plugin + (unmarkBroken hls-splice-plugin) + (unmarkBroken hls-tactics-plugin) + ]; + in addBuildDepends additionalDeps (super.haskell-language-server.overrideScope (lself: lsuper: { Cabal = lself.Cabal_3_6_3_0; aeson = lself.aeson_1_5_6_0; + lens-aeson = lself.lens-aeson_1_1_3; lsp-types = doJailbreak lsuper.lsp-types; # Checks require aeson >= 2.0 })); - hls-brittany-plugin = super.hls-brittany-plugin.overrideScope (lself: lsuper: { + hls-brittany-plugin = unmarkBroken (addBuildDepends (with self.hls-brittany-plugin.scope; [ + brittany czipwith extra ghc-exactprint ghcide hls-plugin-api hls-test-utils lens lsp-types + ]) (super.hls-brittany-plugin.overrideScope (lself: lsuper: { brittany = doJailbreak lself.brittany_0_13_1_2; aeson = lself.aeson_1_5_6_0; + multistate = unmarkBroken (dontCheck lsuper.multistate); lsp-types = doJailbreak lsuper.lsp-types; # Checks require aeson >= 2.0 - }); + }))); + + # This package is marked as unbuildable on GHC 9.2, so hackage2nix doesn't include any dependencies. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self.<package>.scope` + hls-haddock-comments-plugin = unmarkBroken (addBuildDepends (with self.hls-haddock-comments-plugin.scope; [ + ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lsp-types unordered-containers + ]) super.hls-haddock-comments-plugin); mime-string = disableOptimization super.mime-string; @@ -118,6 +143,8 @@ self: super: { ghc-prim = self.hashable; }; + hashable = addBuildDepend self.base-orphans super.hashable; + # Doesn't build with 9.0, see https://github.com/yi-editor/yi/issues/1125 yi-core = doDistribute (markUnbroken super.yi-core); @@ -145,4 +172,8 @@ self: super: { # Unnecessarily strict lower bound on base # https://github.com/mrkkrp/megaparsec/pull/485#issuecomment-1250051823 megaparsec = doJailbreak super.megaparsec; + + # Later versions only support GHC >= 9.2 + ghc-exactprint = self.ghc-exactprint_0_6_4; + apply-refact = self.apply-refact_0_9_3_0; } diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix index dbb550f6fd00b..0c75456735b72 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix @@ -66,6 +66,9 @@ self: super: { process = self.process_1_6_16_0; }); + # Additionally depends on OneTuple for GHC < 9.0 + base-compat-batteries = addBuildDepend self.OneTuple super.base-compat-batteries; + # Ignore overly restrictive upper version bounds. aeson-diff = doJailbreak super.aeson-diff; async = doJailbreak super.async; @@ -73,7 +76,7 @@ self: super: { chell = doJailbreak super.chell; Diff = dontCheck super.Diff; doctest = doJailbreak super.doctest; - hashable = doJailbreak super.hashable; + hashable = addBuildDepend self.base-orphans super.hashable; hashable-time = doJailbreak super.hashable-time; hledger-lib = doJailbreak super.hledger-lib; # base >=4.8 && <4.13, easytest >=0.2.1 && <0.3 integer-logarithms = doJailbreak super.integer-logarithms; @@ -123,45 +126,57 @@ self: super: { liquidhaskell = markBroken super.liquidhaskell; # This became a core library in ghc 8.10., so we don‘t have an "exception" attribute anymore. - exceptions = super.exceptions_0_10_5; - - # ghc versions which don‘t match the ghc-lib-parser-ex version need the - # additional dependency to compile successfully. - ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser super.ghc-lib-parser-ex; + exceptions = super.exceptions_0_10_7; ormolu = super.ormolu_0_2_0_0; # vector 0.12.2 indroduced doctest checks that don‘t work on older compilers vector = dontCheck super.vector; - ghc-api-compat = doDistribute super.ghc-api-compat_8_6; + ghc-api-compat = doDistribute (unmarkBroken super.ghc-api-compat_8_6); mime-string = disableOptimization super.mime-string; - haskell-language-server = addBuildDepend self.hls-brittany-plugin (super.haskell-language-server.overrideScope (lself: lsuper: { - ghc-lib-parser = lself.ghc-lib-parser_8_10_7_20220219; - ghc-lib-parser-ex = addBuildDepend lself.ghc-lib-parser lself.ghc-lib-parser-ex_8_10_0_24; + haskell-language-server = let + # These aren't included in hackage-packages.nix because hackage2nix is configured for GHC 9.2, under which these plugins aren't supported. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self.<package>.scope` + additionalDeps = with self.haskell-language-server.scope; [ + hls-brittany-plugin + hls-haddock-comments-plugin + (unmarkBroken hls-splice-plugin) + (unmarkBroken hls-tactics-plugin) + ]; + in addBuildDepends additionalDeps (super.haskell-language-server.overrideScope (lself: lsuper: { # Pick old ormolu and fourmolu because ghc-lib-parser is not compatible ormolu = doJailbreak lself.ormolu_0_1_4_1; fourmolu = doJailbreak lself.fourmolu_0_3_0_0; - hlint = lself.hlint_3_2_8; aeson = lself.aeson_1_5_6_0; - stylish-haskell = lself.stylish-haskell_0_13_0_0; + lens-aeson = lself.lens-aeson_1_1_3; + stylish-haskell = doJailbreak lself.stylish-haskell_0_13_0_0; lsp-types = doJailbreak lsuper.lsp-types; })); - hls-hlint-plugin = super.hls-hlint-plugin.overrideScope (lself: lsuper: { - # For "ghc-lib" flag see https://github.com/haskell/haskell-language-server/issues/3185#issuecomment-1250264515 - hlint = lself.hlint_3_2_8; - ghc-lib-parser = lself.ghc-lib-parser_8_10_7_20220219; - ghc-lib-parser-ex = addBuildDepend lself.ghc-lib-parser lself.ghc-lib-parser-ex_8_10_0_24; - }); + hlint = self.hlint_3_2_8; + + ghc-lib-parser = self.ghc-lib-parser_8_10_7_20220219; + + # ghc versions which don‘t match the ghc-lib-parser-ex version need the + # additional dependency to compile successfully. + ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser self.ghc-lib-parser-ex_8_10_0_24; - hls-brittany-plugin = super.hls-brittany-plugin.overrideScope (lself: lsuper: { + hls-brittany-plugin = unmarkBroken (addBuildDepends (with self.hls-brittany-plugin.scope; [ + brittany czipwith extra ghc-exactprint ghcide hls-plugin-api hls-test-utils lens lsp-types + ]) (super.hls-brittany-plugin.overrideScope (lself: lsuper: { brittany = doJailbreak lself.brittany_0_13_1_2; - aeson = lself.aeson_1_5_6_0; - lsp-types = doJailbreak lsuper.lsp-types; - }); + multistate = unmarkBroken (dontCheck lsuper.multistate); + lsp-types = doJailbreak lsuper.lsp-types; # Checks require aeson >= 2.0 + }))); + + # This package is marked as unbuildable on GHC 9.2, so hackage2nix doesn't include any dependencies. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self.<package>.scope` + hls-haddock-comments-plugin = unmarkBroken (addBuildDepends (with self.hls-haddock-comments-plugin.scope; [ + ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lsp-types unordered-containers + ]) super.hls-haddock-comments-plugin); # has a restrictive lower bound on Cabal fourmolu = doJailbreak super.fourmolu; @@ -189,4 +204,8 @@ self: super: { # Unnecessarily strict lower bound on base # https://github.com/mrkkrp/megaparsec/pull/485#issuecomment-1250051823 megaparsec = doJailbreak super.megaparsec; + + # Later versions only support GHC >= 9.2 + ghc-exactprint = self.ghc-exactprint_0_6_4; + apply-refact = self.apply-refact_0_9_3_0; } diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix index 49a97e8b91780..350bc4ddfe6a2 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix @@ -72,7 +72,14 @@ self: super: { dec = doJailbreak super.dec; ed25519 = doJailbreak super.ed25519; hackage-security = doJailbreak super.hackage-security; - hashable = overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; }) (doJailbreak (dontCheck super.hashable)); + hashable = + pkgs.lib.pipe + super.hashable + [ (overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; })) + doJailbreak + dontCheck + (addBuildDepend self.base-orphans) + ]; hashable-time = doJailbreak super.hashable-time; HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp <1.1,integer-gmp < 2,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); @@ -85,6 +92,7 @@ self: super: { split = doJailbreak super.split; tar = doJailbreak super.tar; time-compat = doJailbreak super.time-compat; + tuple = addBuildDepend self.base-orphans super.tuple; vector = doJailbreak (dontCheck super.vector); vector-binary-instances = doJailbreak super.vector-binary-instances; vector-th-unbox = doJailbreak super.vector-th-unbox; @@ -99,11 +107,25 @@ self: super: { sha256 = "0rgzrq0513nlc1vw7nw4km4bcwn4ivxcgi33jly4a7n3c1r32v1f"; }) (doJailbreak super.language-haskell-extract); - haskell-language-server = super.haskell-language-server.overrideScope (lself: lsuper: { + haskell-language-server = let + # These aren't included in hackage-packages.nix because hackage2nix is configured for GHC 9.2, under which these plugins aren't supported. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self.<package>.scope` + additionalDeps = with self.haskell-language-server.scope; [ + hls-haddock-comments-plugin + (unmarkBroken hls-splice-plugin) + (unmarkBroken hls-tactics-plugin) + ]; + in addBuildDepends additionalDeps (super.haskell-language-server.overrideScope (lself: lsuper: { # Needed for modern ormolu and fourmolu. # Apply this here and not in common, because other ghc versions offer different Cabal versions. Cabal = lself.Cabal_3_6_3_0; - }); + })); + + # This package is marked as unbuildable on GHC 9.2, so hackage2nix doesn't include any dependencies. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self.<package>.scope` + hls-haddock-comments-plugin = unmarkBroken (addBuildDepends (with self.hls-haddock-comments-plugin.scope; [ + ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lsp-types unordered-containers + ]) super.hls-haddock-comments-plugin); # The test suite depends on ChasingBottoms, which is broken with ghc-9.0.x. unordered-containers = dontCheck super.unordered-containers; @@ -124,6 +146,8 @@ self: super: { # https://github.com/Soostone/retry/issues/71 retry = dontCheck super.retry; + ghc-api-compat = unmarkBroken super.ghc-api-compat; + # 2021-09-18: cabal2nix does not detect the need for ghc-api-compat. hiedb = overrideCabal (old: { libraryHaskellDepends = old.libraryHaskellDepends ++ [self.ghc-api-compat]; @@ -150,4 +174,8 @@ self: super: { # Restrictive upper bound on base and containers sv2v = doJailbreak super.sv2v; + + # Later versions only support GHC >= 9.2 + ghc-exactprint = self.ghc-exactprint_0_6_4; + apply-refact = self.apply-refact_0_9_3_0; } diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix index 9e0ee396b2c74..a6972a019f43b 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix @@ -49,12 +49,6 @@ self: super: { # still the case when updating: https://gitlab.haskell.org/ghc/ghc/-/blob/0198841877f6f04269d6050892b98b5c3807ce4c/ghc.mk#L463 xhtml = if self.ghc.hasHaddock or true then null else self.xhtml_3000_2_2_1; - # Tests fail because of typechecking changes - conduit = dontCheck super.conduit; - - # 0.30 introduced support for GHC 9.2. - cryptonite = doDistribute self.cryptonite_0_30; - # cabal-install needs most recent versions of Cabal and Cabal-syntax cabal-install = super.cabal-install.overrideScope (self: super: { Cabal = self.Cabal_3_8_1_0; @@ -67,112 +61,17 @@ self: super: { process = self.process_1_6_16_0; }); - doctest = dontCheck (doJailbreak super.doctest); - - # Tests fail in GHC 9.2 - extra = dontCheck super.extra; - # Jailbreaks & Version Updates - - # This `doJailbreak` can be removed once we have doctest v0.20 - aeson-diff = assert super.doctest.version == "0.18.2"; doJailbreak super.aeson-diff; - - assoc = doJailbreak super.assoc; - async = doJailbreak super.async; - base64-bytestring = doJailbreak super.base64-bytestring; - base-compat = self.base-compat_0_12_2; - base-compat-batteries = self.base-compat-batteries_0_12_2; - binary-instances = doJailbreak super.binary-instances; - ChasingBottoms = doJailbreak super.ChasingBottoms; - constraints = doJailbreak super.constraints; - cpphs = overrideCabal (drv: { postPatch = "sed -i -e 's,time >=1.5 && <1.11,time >=1.5 \\&\\& <1.12,' cpphs.cabal";}) super.cpphs; - data-fix = doJailbreak super.data-fix; - dbus = self.dbus_1_2_27; - dec = doJailbreak super.dec; - ed25519 = doJailbreak super.ed25519; - ghc-byteorder = doJailbreak super.ghc-byteorder; - ghc-exactprint = overrideCabal (drv: { - # HACK: ghc-exactprint 1.4.1 is not buildable for GHC < 9.2, - # but hackage2nix evaluates the cabal file with GHC 8.10.*, - # causing the build-depends to be skipped. Since the dependency - # list hasn't changed much since 0.6.4, we can just reuse the - # normal expression. - inherit (self.ghc-exactprint_1_5_0) src version; - revision = null; editedCabalFile = null; - libraryHaskellDepends = [ - self.fail - self.ordered-containers - self.data-default - ] ++ drv.libraryHaskellDepends or []; - }) super.ghc-exactprint; - ghc-lib = doDistribute self.ghc-lib_9_2_5_20221107; - ghc-lib-parser = doDistribute self.ghc-lib-parser_9_2_5_20221107; - ghc-lib-parser-ex = doDistribute self.ghc-lib-parser-ex_9_2_1_1; - hackage-security = doJailbreak super.hackage-security; - hashable = super.hashable_1_4_1_0; hashable-time = doJailbreak super.hashable-time; - # 1.1.1 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed - hedgehog = assert super.hedgehog.version == "1.0.5"; doJailbreak super.hedgehog; - HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); - integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's, <1.1, <1.3,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); - indexed-traversable = doJailbreak super.indexed-traversable; - indexed-traversable-instances = doJailbreak super.indexed-traversable-instances; - lifted-async = doJailbreak super.lifted-async; - lukko = doJailbreak super.lukko; - lzma-conduit = doJailbreak super.lzma-conduit; - ormolu = self.ormolu_0_5_0_1; - parallel = doJailbreak super.parallel; - path = doJailbreak super.path; - polyparse = overrideCabal (drv: { postPatch = "sed -i -e 's, <0.11, <0.12,' polyparse.cabal"; }) (doJailbreak super.polyparse); - primitive = doJailbreak super.primitive; - regex-posix = doJailbreak super.regex-posix; - resolv = doJailbreak super.resolv; - retrie = doDistribute (dontCheck self.retrie_1_2_0_1); - singleton-bool = doJailbreak super.singleton-bool; - servant = doJailbreak super.servant; - servant-swagger = doJailbreak super.servant-swagger; + retrie = doJailbreak super.retrie_1_2_1_1; # Depends on utf8-light which isn't maintained / doesn't support base >= 4.16 # https://github.com/haskell-infra/hackage-trustees/issues/347 # https://mail.haskell.org/pipermail/haskell-cafe/2022-October/135613.html language-javascript_0_7_0_0 = dontCheck super.language-javascript_0_7_0_0; - # 2022-09-02: Too strict bounds on lens - # https://github.com/haskell-servant/servant/pull/1607/files - servant-docs = doJailbreak super.servant-docs; - servant-foreign = doJailbreak super.servant-foreign; - servant-auth = doJailbreak super.servant-auth; - servant-auth-docs = doJailbreak super.servant-auth-docs; - servant-auth-server = doJailbreak super.servant-auth-server; - servant-auth-swagger = doJailbreak super.servant-auth-swagger; - # 2022-09-02: Too strict bounds on lens - # https://github.com/haskell-servant/servant-multipart/pull/64 - servant-multipart = doJailbreak super.servant-multipart; - # 2022-09-02: Too strict bounds on lens - # https://github.com/GetShopTV/swagger2/pull/242 - swagger2 = doJailbreak super.swagger2; - - shelly = doJailbreak super.shelly; - splitmix = doJailbreak super.splitmix; - tasty-hspec = doJailbreak super.tasty-hspec; th-desugar = self.th-desugar_1_14; - time-compat = doJailbreak super.time-compat; - tomland = doJailbreak super.tomland; - type-equality = doJailbreak super.type-equality; - unordered-containers = doJailbreak super.unordered-containers; vector = dontCheck super.vector; - vector-binary-instances = doJailbreak super.vector-binary-instances; - - hpack = overrideCabal (drv: { - # Cabal 3.6 seems to preserve comments when reading, which makes this test fail - # 2021-10-10: 9.2.1 is not yet supported (also no issue) - testFlags = [ - "--skip=/Hpack/renderCabalFile/is inverse to readCabalFile/" - ] ++ drv.testFlags or []; - }) (doJailbreak super.hpack); - - # lens >= 5.1 supports 9.2.1 - lens = doDistribute self.lens_5_2; # Apply patches from head.hackage. language-haskell-extract = appendPatch (pkgs.fetchpatch { @@ -183,22 +82,11 @@ self: super: { # Tests depend on `parseTime` which is no longer available hourglass = dontCheck super.hourglass; - # 0.17.0 introduced support for GHC 9.2.x, so when this assert fails, the whole block can be removed - memory = assert super.memory.version == "0.16.0"; appendPatch (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/memory-0.16.0.patch"; - sha256 = "1kjganx729a6xfgfnrb3z7q6mvnidl042zrsd9n5n5a3i76nl5nl"; - }) (overrideCabal { - editedCabalFile = null; - revision = null; - } super.memory); - # For -fghc-lib see cabal.project in haskell-language-server. stylish-haskell = enableCabalFlag "ghc-lib" super.stylish-haskell; # For "ghc-lib" flag see https://github.com/haskell/haskell-language-server/issues/3185#issuecomment-1250264515 - hlint = doDistribute (enableCabalFlag "ghc-lib" (super.hlint_3_4_1.override { - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - })); + hlint = enableCabalFlag "ghc-lib" super.hlint; # https://github.com/sjakobi/bsb-http-chunked/issues/38 bsb-http-chunked = dontCheck super.bsb-http-chunked; @@ -206,32 +94,12 @@ self: super: { # need bytestring >= 0.11 which is only bundled with GHC >= 9.2 regex-rure = doDistribute (markUnbroken super.regex-rure); jacinda = doDistribute super.jacinda; - some = doJailbreak super.some; - - fourmolu = super.fourmolu_0_9_0_0; - - implicit-hie-cradle = doJailbreak super.implicit-hie-cradle; - # 1.3 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed - hashtables = assert super.hashtables.version == "1.2.4.2"; doJailbreak super.hashtables; # 2022-08-01: Tests are broken on ghc 9.2.4: https://github.com/wz1000/HieDb/issues/46 - hiedb = doJailbreak (dontCheck super.hiedb); - - apply-refact = doDistribute super.apply-refact_0_10_0_0; - - # 2022-02-05: The following plugins don‘t work yet on ghc9.2. - # Compare: https://haskell-language-server.readthedocs.io/en/latest/supported-versions.html - haskell-language-server = super.haskell-language-server.override { - hls-haddock-comments-plugin = null; - hls-splice-plugin = null; - hls-tactics-plugin = null; - }; + hiedb = dontCheck super.hiedb; # https://github.com/fpco/inline-c/pull/131 inline-c-cpp = (if isDarwin then appendConfigureFlags ["--ghc-option=-fcompact-unwind"] else x: x) super.inline-c-cpp; - - relude = dontCheck self.relude_1_1_0_0; - hermes-json = doJailbreak super.hermes-json; } diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix index 9a600b5b60281..e57435695cdb9 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix @@ -58,10 +58,6 @@ in { # Tests fail because of typechecking changes conduit = dontCheck super.conduit; - # 0.30 introduced support for GHC 9.2. - cryptonite = doDistribute self.cryptonite_0_30; - - doctest = self.doctest_0_20_1; # consequences of doctest breakage follow: double-conversion = markBroken super.double-conversion; @@ -69,8 +65,6 @@ in { ghc-source-gen = checkAgainAfter super.ghc-source-gen "0.4.3.0" "fails to build" (markBroken super.ghc-source-gen); lucid = jailbreakForCurrentVersion super.lucid "2.11.1"; - invariant = jailbreakForCurrentVersion super.invariant "0.5.6"; - implicit-hie-cradle = jailbreakForCurrentVersion super.implicit-hie-cradle "0.5.0.0"; haskell-src-meta = doJailbreak super.haskell-src-meta; @@ -80,13 +74,10 @@ in { # Jailbreaks & Version Updates aeson = self.aeson_2_1_1_0; - lens-aeson = self.lens-aeson_1_2_2; assoc = doJailbreak super.assoc; async = doJailbreak super.async; base64-bytestring = doJailbreak super.base64-bytestring; - base-compat = self.base-compat_0_12_2; - base-compat-batteries = self.base-compat-batteries_0_12_2; binary-instances = doJailbreak super.binary-instances; ChasingBottoms = doJailbreak super.ChasingBottoms; constraints = doJailbreak super.constraints; @@ -99,7 +90,6 @@ in { ghc-lib-parser = doDistribute self.ghc-lib-parser_9_4_3_20221104; ghc-lib-parser-ex = doDistribute self.ghc-lib-parser-ex_9_4_0_0; hackage-security = doJailbreak super.hackage-security; - hashable = super.hashable_1_4_1_0; hashable-time = doJailbreak super.hashable-time; HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's, <1.1, <1.3,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); @@ -115,20 +105,17 @@ in { regex-posix = doJailbreak super.regex-posix; resolv = doJailbreak super.resolv; singleton-bool = doJailbreak super.singleton-bool; - - # 2022-09-02: Too strict bounds on lens - # https://github.com/GetShopTV/swagger2/pull/242 - swagger2 = doJailbreak super.swagger2; + rope-utf16-splay = doDistribute self.rope-utf16-splay_0_4_0_0; base-orphans = dontCheck super.base-orphans; # Note: Any compilation fixes need to be done on the versioned attributes, # since those are used for the internal dependencies between the versioned # hspec packages in configuration-common.nix. - hspec = self.hspec_2_10_6; - hspec-core = self.hspec-core_2_10_6; + hspec = self.hspec_2_10_7; + hspec-core = self.hspec-core_2_10_7; hspec-meta = self.hspec-meta_2_10_5; - hspec-discover = self.hspec-discover_2_10_6; + hspec-discover = self.hspec-discover_2_10_7; # the dontHaddock is due to a GHC panic. might be this bug, not sure. # https://gitlab.haskell.org/ghc/ghc/-/issues/21619 @@ -136,11 +123,9 @@ in { # We need >= 1.1.2 for ghc-9.4 support, but we don't have 1.1.x in # hackage-packages.nix hedgehog = doDistribute (dontHaddock super.hedgehog_1_2); - # does not work with hedgehog 1.2 yet: + # tasty-hedgehog > 1.3 necessary to work with hedgehog 1.2: # https://github.com/qfpl/tasty-hedgehog/pull/63 - tasty-hedgehog = markBroken super.tasty-hedgehog; - # due to tasty-hedgehog - retry = checkAgainAfter super.tasty-hedgehog "1.3.0.0" "tasty-hedgehog broken" (dontCheck super.retry); + tasty-hedgehog = self.tasty-hedgehog_1_4_0_0; # https://github.com/dreixel/syb/issues/38 syb = dontCheck super.syb; @@ -154,10 +139,6 @@ in { vector = dontCheck super.vector; vector-binary-instances = doJailbreak super.vector-binary-instances; - # fixed in 1.16.x but it's not in hackage-packages yet. - rebase = jailbreakForCurrentVersion super.rebase "1.15.0.3"; - rerebase = jailbreakForCurrentVersion super.rerebase "1.15.0.3"; - hpack = overrideCabal (drv: { # Cabal 3.6 seems to preserve comments when reading, which makes this test fail # 2021-10-10: 9.2.1 is not yet supported (also no issue) @@ -188,20 +169,12 @@ in { jacinda = doDistribute super.jacinda; some = doJailbreak super.some; - # 1.3 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed - hashtables = assert super.hashtables.version == "1.2.4.2"; doJailbreak super.hashtables; - # 2022-08-01: Tests are broken on ghc 9.2.4: https://github.com/wz1000/HieDb/issues/46 hiedb = dontCheck super.hiedb; # 2022-10-06: https://gitlab.haskell.org/ghc/ghc/-/issues/22260 ghc-check = dontHaddock super.ghc-check; - # 2022-11-06: Override override from common, because Cabal-syntax is included since ghc 9.4. - implicit-hie = super.implicit-hie.override { - Cabal-syntax = null; - }; - # 2022-10-06: plugins disabled for hls 1.8.0.0 based on # https://haskell-language-server.readthedocs.io/en/latest/support/plugin-support.html#current-plugin-support-tiers haskell-language-server = super.haskell-language-server.override { @@ -215,10 +188,7 @@ in { hls-ormolu-plugin = null; hls-rename-plugin = null; hls-stylish-haskell-plugin = null; - hls-tactics-plugin = null; - hls-haddock-comments-plugin = null; hls-retrie-plugin = null; - hls-splice-plugin = null; }; # https://github.com/tweag/ormolu/issues/941 diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index 89a0bdf77fa17..f1f7ead5debbd 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -47,6 +47,7 @@ broken-packages: - acme-zalgo - acme-zero - AC-MiniTest + - acousticbrainz-client - AC-Terminal - ActionKid - activehs-base @@ -60,23 +61,22 @@ broken-packages: - adaptive-tuple - adb - addy + - adjunction - adobe-swatch-exchange - - ADPfusion - adp-multi - adtrees - - advent-of-code-ocr - AERN-Basics - aeson-applicative - aeson-bson - aeson-decode - aeson-default - - aeson-dependent-sum - aeson-deriving - aeson-diff-generic - aeson-filthy - aeson-flat - aeson-flatten - aeson-flowtyped + - aeson-gadt-th - aeson-injector - aeson-json-ast - aeson-lens @@ -84,7 +84,6 @@ broken-packages: - aeson-modern-tojson - aeson-options - aeson-parsec-picky - - aeson-picker - aeson-prefix - aeson-schema - aeson-schemas @@ -102,13 +101,14 @@ broken-packages: - agda-snippets - agda-unused - AGI - - ag-pictgen - AhoCorasick - aig - airbrake + - air-extra - airship - airtable-api - air-th + - aivika-gpss - ajhc - AlanDeniseEricLauren - alerta @@ -119,14 +119,18 @@ broken-packages: - algebra-dag - algebraic-classes - algebraic-prelude + - algorithmic-composition-additional + - algorithmic-composition-complex - AlgorithmW - algo-s - align-text - ally-invest + - alpaca-netcode - alphachar - alpino-tools - alsa - alsa-midi + - alsa-seq - altcomposition - alternative-extra - alternative-io @@ -139,12 +143,14 @@ broken-packages: - AMI - amqp-conduit - analyze + - analyze-client - anansi-pandoc - android - android-activity - android-lint-summary - angel - angle + - animalcase - Animas - animascii - animate @@ -161,7 +167,9 @@ broken-packages: - antlr-haskell - anydbm - Aoide + - aop-prelude - aosd + - apache-md5 - apart - api-builder - api-rpc-factom @@ -184,6 +192,7 @@ broken-packages: - arbor-monad-logger - arbor-monad-metric - arbor-postgres + - arch-hs - archiver - archlinux - archnews @@ -213,7 +222,7 @@ broken-packages: - ascii-flatten - ascii-string - ascii-vector-avc - - asil + - asif - asn1-codec - asn1-data - AspectAG @@ -231,11 +240,13 @@ broken-packages: - async-manager - async-timer - aterm + - atlassian-connect-descriptor - atndapi + - atom - atomic-primops-vector - - atom-msp430 - atomo - atp-haskell + - ats-pkg - ats-setup - ats-storable - attempt @@ -257,14 +268,12 @@ broken-packages: - authenticate-ldap - authinfo-hs - auto - - autodocodec-yaml - autom - autonix-deps - autopack - avatar-generator - aviation-units - avl-static - - avro - avro-piper - avr-shake - avwx @@ -301,9 +310,12 @@ broken-packages: - barrie - barrier - barrier-monad + - base16-lens + - base32-lens - base58address - base62 - base64-conduit + - base64-lens - base-compat-migrate - base-encoding - base-feature-macros @@ -332,18 +344,17 @@ broken-packages: - bencoding-lens - berkeleydb - BerkeleyDBXML + - berp - bert - besout - bet - betacode - bgmax - bgzf - - bhoogle - bibdb - bidi-icu - bidirectional - bidirectional-instances - - bidirectionalization-combined - bidispec - bidispec-extras - BiGUL @@ -353,8 +364,9 @@ broken-packages: - binary-derive - binary-ext - binary-indexed-tree - - binary-io + - binary-parsers - binary-protocol + - binary-strict - binary-tree - binary-typed - BinderAnn @@ -387,14 +399,14 @@ broken-packages: - bindings-wlc - bind-marshal - binembed - - bins + - binrep + - binsm - bio - - BiobaseBlast - BiobaseNewick - - BiobaseTurner - biocore - biohazard - bio-sequence + - birds-of-paradise - biscuit-haskell - bisect-binary - bishbosh @@ -408,15 +420,14 @@ broken-packages: - bits-extras - bitspeak - bit-stream + - bitstream - BitStringRandomMonad - BitSyntax - bitx-bitcoin - bizzlelude-js - bkr - blakesum - - Blammo - blas - - blaze-html-contrib - blaze-html-hexpat - blaze-html-truncate - blaze-json @@ -428,6 +439,7 @@ broken-packages: - blockchain - blockhash - Blogdown + - BlogLiterately - bloomfilter-redis - blosum - blubber-server @@ -439,18 +451,15 @@ broken-packages: - bolt - boltzmann-brain - bookhound - - bookkeeper + - boolean-like - boolean-normal-forms - boolexpr - boombox - - boots-app - boring-window-switcher - borsh - bot - botpp - bottom - - boundingboxes - - bowntz - box - bpath - BPS @@ -460,9 +469,11 @@ broken-packages: - Bravo - brians-brain - brick-dropdownmenu - - brick-panes + - brick-filetree - bricks-internal + - brick-skylighting - brillig + - broadcast-chan-tests - broccoli - brok - broker-haskell @@ -474,7 +485,6 @@ broken-packages: - bson-generics - bson-mapping - bsparse - - btree-concurrent - btrfs - buffer - buffer-builder-aeson @@ -491,6 +501,7 @@ broken-packages: - bumper - bunz - burst-detection + - bus-pirate - buster - Buster - butter @@ -514,6 +525,7 @@ broken-packages: - bytestring-substring - bytestring-time - bytestring-typenats + - bzlib - bzlib-conduit-jappie - c10k - c2ats @@ -527,7 +539,6 @@ broken-packages: - cabal-constraints - cabal-db - cabal-dependency-licenses - - cabal-detailed-quickcheck - cabal-dev - cabal-dir - cabal-edit @@ -564,43 +575,40 @@ broken-packages: - caching - cacophony - cafeteria-prelude - - caffegraph - cairo-core - cake3 - cal3d - - calamity - caledon - calenderweek - call-alloy - cal-layout - call-haskell-from-anything - call-plantuml - - camfort - canon - canonical-filepath - - canonical-json - canteven-listen-http - canteven-log - canteven-parsedate - cantor + - capataz - capped-list - capri - caps - - captcha-core - caramia - carbonara - carettah - CarneadesDSL - carte - Cartesian + - casa-abbreviations-and-acronyms - casadi-bindings-internal - Cascade - cascading - caseof - - cases - cas-hashable - casr-logbook - casr-logbook-types + - cassandra-cql - Cassava - cassava-conduit - cassava-records @@ -609,6 +617,7 @@ broken-packages: - catamorphism - Catana - catch-fd + - category-printf - category-traced - catnplus - cautious-file @@ -637,15 +646,16 @@ broken-packages: - cfn-flip - cg - cgen - - cgi-utils + - cgi - cgroup-rts-threads + - chakra - chalkboard - chalmers-lava2000 + - ChannelT - character-cases - charter - chart-histogram - Chart-simple - - chart-svg - chaselev-deque - chatty-text - chatwork @@ -653,27 +663,26 @@ broken-packages: - Checked - checkmate - chez-grater - - chiasma + - chiphunk - Chitra - choose - chorale - chp - - chp-spec - - chr-data - ChristmasTree + - chronograph - chr-parse - chunky - church - church-maybe - - church-pair - - churros - - cicero-api - cielo - cil - cinvoke - c-io - cio + - cipher-aes128 - cipher-blowfish + - cipher-des + - circle - circlehs - citeproc-hs - cjk @@ -685,18 +694,18 @@ broken-packages: - clanki - clarifai - CLASE - - clashilator - - clash-multisignal - - clash-prelude-quickcheck + - clash-prelude - Clash-Royale-Hack-Cheats - - clash-systemverilog - - clash-verilog - - clash-vhdl - ClassLaws - classy-influxdb-simple - classy-parallel - classyplate - ClassyPrelude + - clay + - clckwrks-plugin-bugs + - clckwrks-plugin-mailinglist + - clckwrks-theme-clckwrks + - clckwrks-theme-geo-bootstrap - cld2 - Clean - clean-unions @@ -704,7 +713,6 @@ broken-packages: - clexer - CLI - cli-builder - - clickhouse-haskell - clif - clifm - cli-git @@ -714,13 +722,16 @@ broken-packages: - clipper - clisparkline - clit + - clocked - clock-extras - clogparse - clone-all - closure - cloudfront-signer - clr-inline + - clr-typed - cluss + - clustering - cmark-highlight - cmark-patterns - cmark-sections @@ -738,27 +749,25 @@ broken-packages: - cobot-tools - code-builder - codec-beam - - codec-libevent - codecov-haskell - codeforces-cli - codepad - - codeworld-api - codex - codo-notation + - coercible-utils - coin - coinbase-pro - - cointracking-imports + - colchis - collada-output - collapse-util + - collate - collections - collections-api - co-log-concurrent - co-log-json - - co-log-polysemy-formatting - co-log-sys - colonnade - colorless - - colors - coltrane - com - comark-syntax @@ -767,21 +776,21 @@ broken-packages: - combinatorial-problems - combinator-interactive - combobuffer + - comic - Command - commander + - commander-cli - Commando - - commsec + - commodities + - compact - Compactable - compact-list - compact-map - - compact-mutable-vector - compact-sequences - - compact-socket - compact-string - compact-string-fix - comparse - compdata - - compdoc - compendium-client - competition - compilation @@ -789,9 +798,8 @@ broken-packages: - composable-associations-aeson - compose-trans - composite-aeson-path + - composite-aeson-refined - composite-cassava - - composite-dhall - - composite-lens-extra - composition-tree - compressed - compression @@ -799,17 +807,20 @@ broken-packages: - computations - concrete-relaxng-parser - concrete-typerep - - concur-core + - concurrency-benchmarks - concurrent-buffer - Concurrent-Cache - Concurrential - concurrent-st - concurrent-state + - concurrent-supply - concurrent-utilities + - conditional-restriction-parser - condorcet - conductive-base - conduit-audio-lame - conduit-audio-samplerate + - conduit-connection - conduit-find - conduit-iconv - conduit-network-stream @@ -817,10 +828,12 @@ broken-packages: - conduit-tokenize-attoparsec - conduit-vfs - conf + - conferer-dhall - conferer-hspec - conferer-provider-json - conferer-snap - conferer-source-json + - conferer-warp - confide - ConfigFileTH - config-parser @@ -838,16 +851,19 @@ broken-packages: - consistent - console-program - const-math-ghc-plugin + - constrained - constrained-categories - constrained-dynamic - constrained-monads - ConstraintKinds + - constraints-deriving - constraints-emerge - constr-eq - constructive-algebra - consul-haskell - Consumer - containers-benchmark + - containers-unicode-symbols - containers-verified - ContArrow - ContextAlgebra @@ -855,6 +871,7 @@ broken-packages: - contiguous-checked - contiguous-fft - continue + - contracheck-applicative - Contract - contra-tracers - control-dsl @@ -862,25 +879,26 @@ broken-packages: - control-monad-failure - control-monad-failure-mtl - Control-Monad-ST2 - - contstuff - - copilot-sbv + - contstuff-monads-tf + - contstuff-transformers + - convert-annotation - copr - coquina - COrdering - core - corebot-bliki + - core-compiler - CoreDump - CoreErlang - core-haskell - corenlp-parser - - core-telemetry + - core-warn - Coroutine - coroutine-object - CouchDB - couchdb-conduit - couch-hs - counter - - country - courier - court - coverage @@ -898,12 +916,12 @@ broken-packages: - craftwerk - crawlchain - crc16 + - crc32c - crdt - crdt-event-fold - credential-store - critbit - criterion-cmp - - criterion-compare - criterion-plus - criterion-to-html - criu-rpc-types @@ -926,7 +944,7 @@ broken-packages: - csa - cse-ghc-plugin - csg - - CSPM-FiringRules + - csound-expression-dynamic - CSPM-Frontend - cspretty - css @@ -935,25 +953,28 @@ broken-packages: - css-syntax - C-structs - csv-nptools + - csv-sip - ctemplate - ctkl - cuboid - cuckoo-filter - curl-aeson - curl-runnings + - curly-expander - currency-convert - curry-base - CurryDB - - curryer-rpc - curry-frontend - curryrs - curves - custom-prelude + - cutter - cut-the-crap - CV - d3js - dag - DAG-Tournament + - dahdit - damnpacket - danibot - dao @@ -966,11 +987,12 @@ broken-packages: - darkplaces-rcon - darkplaces-text - data-accessor-monadLib + - data-accessor-monads-fd - data-accessor-monads-tf - data-accessor-template + - data-ascii - data-aviary - data-base - - database-id-groundhog - database-migrate - database-study - data-check @@ -978,11 +1000,11 @@ broken-packages: - data-concurrent-queue - data-construction - data-constructors + - data-default-instances-new-base - data-dispersal - data-diverse - datadog - data-easy - - data-elevator - data-embed - data-emoticons - data-filepath @@ -993,7 +1015,9 @@ broken-packages: - DataIndex - data-ivar - data-kiln - - data-lens + - data-lens-fd + - data-lens-ixset + - data-lens-template - datalog - data-map-multikey - data-named @@ -1014,13 +1038,11 @@ broken-packages: - data-standards - data-store - data-stringmap - - data-sword - DataTreeView - data-type - data-util - data-validation - data-variant - - DataVersion - dates - datetime - datetime-sb @@ -1041,17 +1063,18 @@ broken-packages: - dcpu16 - ddc-base - ddc-code - - ddc-core - dead-code-detection - Deadpan-DDP - dead-simple-json + - debug-me - debug-tracy - decepticons - - decimal-literals + - decision-diagrams - DecisionTree - decoder-conduit - deepcontrol - DeepDarkFantasy + - deepl - deepseq-bounded - deepseq-instances - deepseq-magic @@ -1065,23 +1088,25 @@ broken-packages: - dense - dense-int-set - dependent-hashmap - - dependent-monoidal-map - - dep-t - deptrack-core + - dep-t-value - derangement - derivation-trees - derive - derive-enumerable - derive-gadt - deriveJsonNoPrefix + - derive-lifted-instances - derive-monoid - derive-trie - derp-lib - describe + - descriptive - deterministic-game-engine - detrospector - deunicode - devil + - df1-html - Dflow - dfsbuild - dgim @@ -1096,11 +1121,13 @@ broken-packages: - dia-base - diagrams-boolean - diagrams-builder + - diagrams-gtk - diagrams-pdf - diagrams-qrcode - diagrams-rubiks-cube - diagrams-tikz - dialogflow-fulfillment + - dialogue - dib - dice2tex - dicom @@ -1108,6 +1135,7 @@ broken-packages: - dictparser - diet - diffcabal + - differential - DifferentialEvolution - diff-gestalt - diffmap @@ -1116,13 +1144,14 @@ broken-packages: - digestive-foundation-lucid - digestive-functors-aeson - digestive-functors-happstack + - digestive-functors-snap - digest-pure - DigitalOcean - digitalocean-kzs - digits + - digraph - dijkstra-simple - DimensionalHash - - dimensional-tf - diophantine - diplomacy - direct-binary-files @@ -1131,9 +1160,8 @@ broken-packages: - direct-http - direct-plugins - direm - - dirtree - - discord-haskell - discordian-calendar + - discord-register - discord-types - discrete - DiscussionSupportSystem @@ -1141,7 +1169,7 @@ broken-packages: - disjoint-containers - disjoint-set - disjoint-set-stateful - - disk-bytes + - diskhash - Dist - distance - distributed-closure @@ -1152,37 +1180,37 @@ broken-packages: - djinn-th - dmcc - dmenu - - dnf-repo - - dns-patterns + - dnscache - dnsrbl - dnssd - dobutok - dobutokO - - dobutokO-frequency - doccheck - docidx - docker-build-cacher - dockercook - dockerfile-creator + - docopt - docrecords - doctest-discover-configurator + - doctest-extract - doctest-prop - docusign-example - docvim - DOH - doi + - domain-optics - dom-parser - domplate - dom-selector - - do-notation - do-notation-dsl - dormouse-uri - do-spaces - dotfs - dot-linker + - dotparse - doublezip - doublify-toolkit - - downhill - downloader - dozenal - dozens @@ -1198,11 +1226,10 @@ broken-packages: - DrIFT - DrIFT-cabalized - drifter-postgresql - - drinkery - drmaa - drone - dropbox - - DSA + - drunken-bishop - dsc - ds-kanren - dsmc @@ -1211,20 +1238,24 @@ broken-packages: - dstring - DTC - dtd-text + - dtw - dualizer - duckling - duet + - dumb-cas - dump-core - dunai-core - Dung - duplo - dura + - duration - dvault - dvdread - dvi-processing - dwarf - dwarfadt - dyckword + - dyna-brick - dynamic-graphs - dynamic-mvector - dynamic-object @@ -1249,7 +1280,7 @@ broken-packages: - easytest - ebeats - ebnf-bff - - eccrypto-ed25519-bindings + - eccrypto - ecma262 - ecta-plugin - ecu @@ -1257,24 +1288,23 @@ broken-packages: - ede - edenmodules - edis - - EdisonAPI - edit - edit-lenses - editline - effectful-st - effect-handlers - effective-aspects - - effect-monad - effect-stack - effet - effin + - eflint - egison-pattern-src - ehaskell - - ehlo - ehs - eibd-client-simple - eigen - Eight-Ball-Pool-Hack-Cheats + - eio - EitherT - either-unwrap - ejdb2-binding @@ -1289,7 +1319,6 @@ broken-packages: - elevator - elision - elm-export-persistent - - elminator - elm-street - elm-websocket - elocrypt @@ -1303,9 +1332,11 @@ broken-packages: - Empty - empty-monad - enchant + - encode-string - encoding - encoding-io - encryptable + - endo - engine-io - entwine - EnumContainers @@ -1325,9 +1356,9 @@ broken-packages: - epic - epi-sim - epoll - - eprocess - epubname - Eq + - equal-files - EqualitySolver - equational-reasoning-induction - equeue @@ -1345,10 +1376,10 @@ broken-packages: - ert - escape-artist - escoger + - espial - esqueleto-pgcrypto - ess - - essence-of-live-coding-gloss-example - - essence-of-live-coding-pulse-example + - essence-of-live-coding - EstProgress - Etage - etc @@ -1356,22 +1387,20 @@ broken-packages: - ethereum-rlp - eurofxref - evdev-streamly - - eve + - eve-cli - eved - event - event-driven - - eventful-sql-common - eventsource-api + - eventsourced - eventstore - - eventuo11y - - eventuo11y-dsl - - evoke - - ewe - exact-cover - exact-real-positional - except-exceptions - exceptional - exceptionfree-readfile + - exception-monads-fd + - exception-via - exchangerates - execs - executor @@ -1383,13 +1412,12 @@ broken-packages: - exinst - exists - exitcode - - exon - exp-cache + - exp-extended - explain - explicit-constraint-lens - explicit-determinant - explicit-iomodes - - exploring-interpreters - exposed-containers - expression-parser - expressions @@ -1397,9 +1425,10 @@ broken-packages: - extcore - extended-categories - extended-containers + - extensible-data - extensible-effects-concurrent - extensible-skeleton - - Extra + - external-sort - extractelf - ez3 - ez-couch @@ -1417,28 +1446,34 @@ broken-packages: - falling-turnip - fastbayes - fast-combinatorics + - fast-downward - fastedit + - fastly - fast-nats - fastpbkdf2 - FastPush + - fast-tagsoup-utf8-only - FastxPipe - fathead-util + - fay - fbmessenger-api - fb-persistent - fca - fcache - fcf-composite + - fcf-graphs - fcg - - fckeditor - fclabels-monadlib - fcm-client - fdo-trash + - feather - feature-flipper - fedora-packages - feed-cli - feed-collect - feed-crawl - fei-cocoapi + - feldspar-language - fenfire - fernet - FerryCore @@ -1449,6 +1484,7 @@ broken-packages: - fgl-extras-decompositions - fib - fibon + - fields - fieldwise - fig - file-collection @@ -1472,7 +1508,6 @@ broken-packages: - find-source-files - fingertree-psqueue - fingertree-tf - - finitary - finite - FiniteCategories - finite-fields @@ -1484,6 +1519,7 @@ broken-packages: - fits-parse - fixed-point - fixedprec + - fixed-precision - fixed-storable-array - fixed-timestep - fixed-width @@ -1501,10 +1537,11 @@ broken-packages: - flexible-time - flickr - flink-statefulfun - - float128 - float-binstring - floating-bits + - flock - flowdock + - flowdock-api - flowdock-rest - flow-er - flowlocks-framework @@ -1533,11 +1570,13 @@ broken-packages: - for-free - forger - ForkableT + - formal - formattable + - forml - formura - Fortnite-Hack-Cheats-Free-V-Bucks-Generator - - fortran-src-extras - foscam-filename + - fpe - FPretty - fptest - fquery @@ -1562,10 +1601,12 @@ broken-packages: - freesound - free-theorems - FreeTypeGL + - freetype-simple - free-v-bucks-generator-no-survey - free-v-bucks-generator-ps4-no-survey - freq - fresh + - fresnel - friday-devil - friday-scale-dct - frown @@ -1599,7 +1640,6 @@ broken-packages: - fused-effects-exceptions - fused-effects-mwc-random - fused-effects-resumable - - fused-effects-squeal - fusion - futhask - futun @@ -1607,11 +1647,13 @@ broken-packages: - fuzzyfind - fuzzy-timings - fwgl + - fxpak - g4ip - galois-field - gameclock - game-probability - gamgee + - Gamgine - gamma - Ganymede - garepinoh @@ -1624,16 +1666,16 @@ broken-packages: - gegl - gelatin - gemcap - - gemini-exports + - gemini-server - gemstone - gencheck - gender - genders + - general-allocate - general-prelude - GeneralTicTacToe - generator - generators - - generic-accessors - generic-binary - generic-church - generic-enum @@ -1641,21 +1683,24 @@ broken-packages: - generic-labels - generic-lens-labels - generic-lucid-scaffold + - generic-match - generic-maybe - generic-override - generic-pretty + - generic-pretty-instances + - generic-records - genericserialize - generic-server - generics-mrsop - generic-storable - generic-tree - - generic-trie - generic-xml - generic-xmlpickler - genetics - genifunctors - gen-imports - geniplate + - geniplate-mirror - gen-passwd - genprog - gentlemark @@ -1670,13 +1715,13 @@ broken-packages: - geos - Get - getflag - - gf - GGg - ggtsTC + - ghc-api-compat - ghc-clippy-plugin - ghc-core-smallstep - ghc-datasize - - ghc-debug-convention + - ghc-debug-client - ghc-dump-tree - ghc-dup - ghc-events-analyze @@ -1707,10 +1752,8 @@ broken-packages: - ghc-srcspan-plugin - ghc-syb - ghc-syb-utils - - ghc-tags - ghc-tags-core - ghc-time-alloc-prof - - ghcup - ghc-usage - gh-labeler - gi-adwaita @@ -1720,18 +1763,19 @@ broken-packages: - gi-gio-hs-list-model - gi-graphene - gi-gsttag + - gi-gtk-declarative - gi-gtk-layer-shell - gi-gtksheet - gi-handy - - ginger - gingersnap - ginsu - - gi-pangocairo + - gipeda - giphy-api - gist - GiST - git - git-all + - git-brunch - git-checklist - git-cuk - git-date @@ -1747,10 +1791,8 @@ broken-packages: - gitlab-api - gitlab-haskell - gitlib-cmdline - - gitlib-libgit2 - gitlib-utils - git-repair - - gitson - gitter - git-vogue - glade @@ -1772,14 +1814,12 @@ broken-packages: - glpk-headers - gltf-codec - glue - - gluturtle - g-npm - goa - goal-core - goatee - gochan - godot-haskell - - godot-megaparsec - gofer-prelude - gogol-core - gooey @@ -1792,14 +1832,17 @@ broken-packages: - googlepolyline - google-search - google-server-api + - google-static-maps - google-translate - gopherbot - gopro-plus - gore-and-ash + - gothic - GotoT-transformers + - gotta-go-fast - gpah - GPipe - - GPipe-GLFW4 + - GPipe-Core - gpmf - gpx-conduit - graceful @@ -1807,7 +1850,6 @@ broken-packages: - Grafos - grakn - grammatical-parsers - - grapefruit-frp - Graph500 - Graphalyze - graphbuilder @@ -1815,9 +1857,9 @@ broken-packages: - graphics-drawingcombinators - graphics-formats-collada - graph-matchings + - graphmod - graphmod-plugin - graphql-api - - graphql-spice - graphql-utils - graphql-w-persistent - graph-rewriting @@ -1833,22 +1875,22 @@ broken-packages: - greg-client - gremlin-haskell - Grempa - - grenade - greplicate - gridfs - grids - grm - GroteTrap - - groundhog-mysql - - groundhog-th + - groundhog + - group-by-date + - groups-generic - group-theory - group-with - growler + - grow-vector - grpc-api-etcd - gsl-random - gstreamer - GTALib - - gtfs-realtime - gtk2hs-cast-th - gtk2hs-hello - gtk2hs-rpn @@ -1867,21 +1909,20 @@ broken-packages: - h2c - haar - HABQT + - hack2-contrib - hack2-handler-warp - hackage2hwn - hackage-api - hackage-diff + - hackage-mirror - hackage-processing - hackage-proxy - hackager - - hackage-repo-tool - hackage-server - hackage-whatsnew - hackernews - hack-frontend-happstack - hack-handler-cgi - - hack-handler-happstack - - hack-handler-kibro - HackMail - hackport - hactor @@ -1892,6 +1933,7 @@ broken-packages: - haddock-test - hadoop-formats - hadoop-rpc + - hadoop-streaming - hafar - Haggressive - hahp @@ -1922,6 +1964,9 @@ broken-packages: - halipeto - halive - halma + - halves + - ham + - HaMinitel - hampp - hamsql - hamtmap @@ -1931,6 +1976,7 @@ broken-packages: - HandlerSocketClient - handsy - Hangman + - HangmanAscii - hannahci - hans - hanspell @@ -1947,14 +1993,17 @@ broken-packages: - happstack-monad-peel - happstack-server-tls-cryptonite - happstack-util + - happstack-yui - HAppS-Util - happybara - happybara-webkit-server + - happy-hour - HappyTree - hapstone - HaPy - haquery - harchive + - hardware-edsl - harfbuzz-pure - HARM - HarmTrace-Base @@ -1962,13 +2011,14 @@ broken-packages: - harpy - harvest-api - has + - hasbolt - HasCacBDD - hascar + - hascard - hascas - hash - hashable-extras - hashable-generics - - hashable-orphans - hashabler - hashed-storage - hashring @@ -1986,12 +2036,13 @@ broken-packages: - haskell98 - haskell98libraries - haskell-abci + - haskell-admin-core - HaskellAnalysisProgram - haskell-awk + - haskell-bcrypt - haskell-bitmex-rest - haskell-brainfuck - haskell-cnc - - haskell-coffee - haskell-compression - haskell-conll - haskell-course-preludes @@ -2008,7 +2059,7 @@ broken-packages: - haskell-in-space - haskell-kubernetes - HaskellLM - - haskell-lsp + - haskell-lsp-types - haskell-ml - haskell-mpfr - haskell-names @@ -2047,8 +2098,8 @@ broken-packages: - haskhol-core - haskmon - haskoin - - haskoin-core - haskoin-util + - haskoin-wallet - haskore - haskore-vintage - HaskRel @@ -2056,19 +2107,21 @@ broken-packages: - hasktorch-ffi-th - hasktorch-signatures-partial - hasktorch-signatures-support - - haskus-binary + - haskus-utils-variant - haskyapi - hasmin - haspara + - hasparql-client - hasql-backend - hasql-class - hasql-cursor-transaction - hasql-explain-tests - hasql-generic + - hasql-interpolate - hasql-resource-pool - hasql-simple - - hasql-streams-example - - hasql-transaction-io + - hasql-streams-core + - hasql-url - hastache - haste - haste-prim @@ -2080,11 +2133,12 @@ broken-packages: - haven - haverer - hax - - haxl-facebook + - haxl - haxparse - haxr-th - hayland - hayoo-cli + - hb3sum - hBDD-CMUBDD - hBDD-CUDD - hbeanstalk @@ -2100,6 +2154,7 @@ broken-packages: - hchesslib - hcltest - hcoap + - hcobs - hcom - hcron - hCsound @@ -2109,10 +2164,8 @@ broken-packages: - hdbc-postgresql-hstore - HDBC-postgresql-hstore - hdevtools - - hdf - hdf5 - hDFA - - hdigest - hdis86 - hdiscount - hdm @@ -2121,6 +2174,7 @@ broken-packages: - hdr-histogram - HDRUtils - headergen + - headroom - heap-console - heapsort - heart-core @@ -2128,9 +2182,9 @@ broken-packages: - heckle - heddit - hedgehog-checkers + - hedgehog-gen - hedgehog-generic - hedgehog-golden - - hedgehog-lens - hedgehog-servant - hedis-config - hedis-namespace @@ -2139,10 +2193,11 @@ broken-packages: - hedra - heidi - hein + - heist-aeson - heist-async + - heist-emanote - helisp - helix - - hell - helm - help-esb - hemkay @@ -2172,12 +2227,11 @@ broken-packages: - hext - hextra - heyefi - - heystone + - heyting-algebras - hF2 - hfann - HFitUI - hfmt - - hfoil - hfov - HFrequencyQueue - hfusion @@ -2190,7 +2244,6 @@ broken-packages: - hGelf - hgeometric - hgeometry-ipe - - hgettext - hgis - hgom - hgopher @@ -2206,6 +2259,7 @@ broken-packages: - hi - hi3status - hichi + - hid - hidden-char - hid-examples - hieraclus @@ -2213,18 +2267,20 @@ broken-packages: - hierarchy - hiernotify - higgledy + - higher-leveldb - higherorder - highjson - highlight-versions - highWaterMark + - hills - himg - hindley-milner - hindley-milner-type-check - - hinotify-conduit - hinquire - hinstaller - hinter - hinterface + - hint-server - hipchat-hs - hipe - Hipmunk @@ -2248,9 +2304,9 @@ broken-packages: - hkt - hlbfgsb - hleap - - hledger-api - hledger-chart - hledger-diff + - hledger-iadd - hledger-irr - hledger-vty - hlibBladeRF @@ -2260,18 +2316,20 @@ broken-packages: - hlogger - HLogger - hlongurl - - hlrdb-core - - hls-exactprint-utils + - hls-brittany-plugin + - hls-haddock-comments-plugin - hls-selection-range-plugin + - hls-splice-plugin - hls-stan-plugin + - hls-tactics-plugin - hlwm + - hly - hmarkup - hmatrix-banded - hmatrix-mmap - hmatrix-nipals - hmatrix-sparse - hmatrix-static - - hmatrix-sundials - hmatrix-svdlibc - hmatrix-syntax - hmatrix-tests @@ -2283,7 +2341,6 @@ broken-packages: - hMollom - hmp3 - Hmpf - - hmpfr - hmumps - hnetcdf - hnn @@ -2304,14 +2361,12 @@ broken-packages: - hogg - hoggl - hois - - hol - hold-em - hole - holmes - homeomorphic - homoiconic - homplexity - - honeycomb - honi - hoobuddy - hood2 @@ -2324,8 +2379,9 @@ broken-packages: - hopencc - hopencl - HOpenCV + - hopenpgp-tools - hopfield - - hoppy-runtime + - hoppy-generator - hops - hoq - horizon @@ -2337,6 +2393,7 @@ broken-packages: - houseman - hp2any-core - hpack-convert + - hpack-dhall - hpapi - hpasteit - HPath @@ -2347,18 +2404,16 @@ broken-packages: - hplaylist - hpodder - hpqtypes - - hprotoc - hps-kmeans - hPushover - hpygments - hpylos - hpyrg - - hq - - HQu - - hquantlib + - hquantlib-time - hquery - hR - hreq-core + - hRESP - h-reversi - hricket - Hricket @@ -2366,27 +2421,19 @@ broken-packages: - hruby - hs2bf - hs2ps - - hsaml2 - hsay - hsbc - hsbencher - hs-brotli - - hsc3-cairo - - hsc3-db - - hsc3-dot - - hsc3-lang - - hsc3-process - - hsc3-rec + - hsc3 - hsc3-rw - hsc3-sf - - hsc3-unsafe - hscaffold - hscamwire - hs-carbon-examples - hscd - - hs-cdb - hscdio - - hschema + - hschema-aeson - hscim - hsclock - hScraper @@ -2406,7 +2453,6 @@ broken-packages: - hsfilt - hs-fltk - hsforce - - hs-functors - hs-gizapp - hsgnutls - hsgnutls-yj @@ -2428,19 +2474,19 @@ broken-packages: - hslogger-reader - hslogger-template - hs-logo + - hslua-examples - hslua-list - hsluv-haskell - hsmagick - - HSmarty - hsmodetweaks - Hsmtlib - hsmtpclient - hsnock - hs-nombre-generator - hsns + - hsnsq - hsntp - hs-openmoji-data - - hs-opentelemetry-instrumentation-hspec - hsoptions - hsoz - hsparql @@ -2457,6 +2503,7 @@ broken-packages: - hspec-snap - hspec-structured-formatter - hspec-tables + - hspec-webdriver - HsPerl5 - hs-pgms - hspkcs11 @@ -2491,26 +2538,24 @@ broken-packages: - hsx - hsXenCtrl - hsyscall - - hsyslog-tcp + - hsyslog-udp - hszephyr - hTalos - - htar - htdp-image - hTensor - htestu - HTicTacToe - htiled - htlset - - html-charset - - html-parse - html-rules - html-tokenizer - htoml - htoml-megaparsec + - hts - htsn - htssets - - http2-client - - http2-grpc-proto-lens + - http2-client-exe + - http2-grpc-types - http-attoparsec - http-client-lens - http-client-request-modifiers @@ -2522,8 +2567,10 @@ broken-packages: - http-dispatch - http-grammar - http-kinder + - http-kit - http-listen - http-monad + - http-pony - http-pony-serve-wai - http-proxy - http-querystring @@ -2549,7 +2596,6 @@ broken-packages: - HUnit-Diff - HUnit-Plus - hunit-rematch - - hunspell-hs - hup - hurl - hurriyet @@ -2559,17 +2605,20 @@ broken-packages: - hVOIDP - hwall-auth-iitk - hw-ci-assist + - hw-dump - hweblib - hwhile - hw-json-demo - - hw-lazy + - hw-json-lens - hworker - hw-playground-linear + - hw-prim-bits + - hw-simd-cli - hwsl2 + - hw-tar - hx - hxmppc - HXQ - - hxt-cache - hxt-pickle-utils - hyakko - hydra-hs @@ -2577,13 +2626,13 @@ broken-packages: - hydrogen-multimap - hylide - hylolib + - hyper - hyperdrive - hyperfunctions - - hypergeomatrix - - hyper-haskell-server - hyperion - hyperloglogplus - hyperscript + - hypertypes - hypher - hyraxAbif - hzulip @@ -2598,17 +2647,19 @@ broken-packages: - icepeak - icfpc2020-galaxy - IcoGrid - - iconv-typed + - iconv - ideas - ide-backend-common - idempotent - identifiers - idiii - idna2008 + - idris - IDynamic - ieee-utils - iexcloud - ifcxt + - iff - if-instance - IFS - ig @@ -2621,10 +2672,10 @@ broken-packages: - ihaskell-parsec - ihaskell-plot - ihaskell-widgets - - ihp-hsx - illuminate - imagemagick - imagepaste + - image-type - imapget - imgur - imj-prelude @@ -2639,7 +2690,8 @@ broken-packages: - imports - impossible - imprint - - incipit + - impure-containers + - inchworm - indentation-core - index-core - indexed-containers @@ -2647,6 +2699,7 @@ broken-packages: - indextype - indices - infernal + - inferno-types - infer-upstream - inf-interval - infix @@ -2655,9 +2708,9 @@ broken-packages: - inilist - ini-qq - initialize + - inj-base - inject-function - - inline-asm - - inline-r + - injections - in-other-words-plugin - inserts - instana-haskell-trace-sdk @@ -2665,11 +2718,11 @@ broken-packages: - instant-generics - instapaper-sender - instinct - - intcode - integer-pure - - intel-aes + - integer-simple - intensional-datatys - interact + - interactive-plot - interleavableGen - interleavableIO - interlude-l @@ -2681,14 +2734,17 @@ broken-packages: - interpolator - interruptible - interval + - interval-algebra + - interval-patterns - interval-tree-clock - IntFormats + - int-interval-map - int-multimap - intrinsic-superclasses + - intro - introduction - - intro-prelude + - inventory - invertible - - invertible-hlist - invertible-syntax - involutive-semigroups - io-capture @@ -2708,11 +2764,11 @@ broken-packages: - iptables-helpers - IPv6DB - Irc + - ircbot - irc-dcc - irc-fun-types - ireal - iri - - iridium - iris - iron-mq - irt @@ -2720,13 +2776,13 @@ broken-packages: - IsNull - iso8601-duration - isobmff - - isomorphism-class - isotope - itcli - itemfield - iteratee - iterative-forward-search - iterIO + - iterm-show - it-has - ivory - ixdopp @@ -2738,11 +2794,13 @@ broken-packages: - JackMiniMix - jacobi-roots - jaeger-flamegraph + - jail - jalla + - jammittools - jarfind - jarify - jason - - java-bridge + - java-adt - javascript-bridge - javav - Javav @@ -2755,15 +2813,18 @@ broken-packages: - jet-stream - Jikka - jinquantities + - jmacro-rpc - jml-web-service - jni - jobqueue - join-api - joinlist - - joint - jonathanscard - jort + - joy-rewrite - jpeg + - jsaddle-clib + - jsaddle-warp - jsaddle-wkwebview - js-good-parts - json2 @@ -2774,12 +2835,13 @@ broken-packages: - json-ast-quickcheck - JSONb - json-builder + - json-bytes-builder - json-encoder - jsonextfilter - json-extra - json-fu - json-litobj - - jsonlogic + - jsonlogic-aeson - jsonnet - json-pointer - json-pointy @@ -2802,6 +2864,7 @@ broken-packages: - judy - juicy-gcode - JuicyPixels-blp + - JuicyPixels-blurhash - JuicyPixels-canvas - JuicyPixels-util - JunkDB @@ -2812,7 +2875,6 @@ broken-packages: - jvm-parser - JYU-Utils - kademlia - - kafka-client - kafka-client-sync - kalman - Kalman @@ -2834,22 +2896,22 @@ broken-packages: - kdesrc-build-extra - kd-tree - keccak + - keenser - keera-hails-reactivevalues - keid-ui-dearimgui - keiretsu - kempe - - kerry - kesha - Ketchup - kewar - keycloak-hs - keyed - - keystore + - keyed-vals - khph - kickass-torrents-dump-parser - kickchan - - ki-unlifted - kleene-list + - kmn-programming - kmonad - kmp-dfa - knots @@ -2861,9 +2923,9 @@ broken-packages: - koofr-client - korea-holidays - kraken - - krank - krapsh - Kriens + - kriti-lang - krpc - KSP - ktx @@ -2876,7 +2938,6 @@ broken-packages: - lagrangian - lambda2js - lambdaBase - - lambdabot-telegram-plugins - lambdabot-utils - lambdabot-xmpp - lambda-bridge @@ -2893,9 +2954,10 @@ broken-packages: - lambda-sampler - lambdatex - lambda-toolbox + - lambdatwit + - Lambdaya - lame - lame-tester - - landlock - language-asn - language-c-comments - language-c-inline @@ -2903,14 +2965,15 @@ broken-packages: - language-csharp - language-dart - language-dockerfile - - language-ecmascript - language-elm + - language-fortran - language-gcl - language-gemini - language-go - language-guess - language-hcl - language-java-classfile + - language-js - language-lua2 - language-lua-qq - language-mixal @@ -2925,12 +2988,14 @@ broken-packages: - language-tl - language-typescript - language-webidl + - laop - LargeCardinalHierarchy - Lastik - latest-npm-version - latex-formulae-image - latex-svg-image - LATS + - launchdarkly-server-sdk - launchpad-control - lawless-concurrent-machines - layers @@ -2940,22 +3005,19 @@ broken-packages: - lazify - lazyarray - lazyboy - - lazy-bracket - lazy-priority-queue - lazyset - LazyVault - l-bfgs-b - LC3 - lcs - - lda + - ldgallery-compiler - ldif - ld-intervals - leaf - leapseconds - learn - Learning - - learning-hmm - - learn-physics-examples - leetify - lendingclub - lens-datetime @@ -2966,12 +3028,14 @@ broken-packages: - lens-process - lensref - lens-simple + - lens-tell - lens-text-encoding - lens-th-rewrite - lens-time - lens-tutorial - lens-typelevel - lens-xml + - lenz-template - less-arbitrary - Level0 - level-monad @@ -2990,13 +3054,9 @@ broken-packages: - libltdl - liboath-hs - liboleg - - libpafe - libpq - librandomorg - - librarian - - libsecp256k1 - libsystemd-daemon - - libsystemd-journal - libtagc - libxls - libxlsxwriter-hs @@ -3008,7 +3068,6 @@ broken-packages: - lifetimes - lifted-protolude - lifter - - lifx-lan - ligature - light - lilypond @@ -3029,14 +3088,16 @@ broken-packages: - linkedhashmap - linked-list-with-iterator - linklater + - linnet - linode - linode-v4 - linux-blkid - linux-cgroup + - linux-evdev - linux-kmod - linux-perf + - linux-xattr - linx-gateway - - lion - lipsum-gen - liquid - liquidhaskell-cabal @@ -3045,8 +3106,8 @@ broken-packages: - listlike-instances - list-mux - list-prompt - - list-remote-forwards - list-t-http-client + - list-t-libcurl - list-tries - list-t-text - list-zip-def @@ -3063,31 +3124,31 @@ broken-packages: - llvm-hs - llvm-ht - llvm-pretty - - lmdb-high-level + - lmdb-simple - lmonad + - lnurl - load-balancing - load-font - local-address - located - located-monad-logger - loch - - loc-test - log2json + - log-base + - log-effect - logentries - logger - logging-effect-extra-file - logging-effect-extra-handler - Logic - logicst - - logict-state + - logict-sequence - logplex-parse - log-warper - lojbanParser - lojbanXiragan - - lol - lol-calculus - longboi - - longshot - lookup-tables - loopbreaker - loop-dsl @@ -3098,20 +3159,21 @@ broken-packages: - lorem - loris - loshadka + - louis - lowgl - - lp-diagrams + - lp-diagrams-svg - LRU - lrucaching - lscabal - L-seed - lsfrom - - lti13 - ltiv1p1 - ltk - LTS - lua-bc - luautils - - lucid2 + - lucid2-htmx + - lucid-aria - lucid-hyperscript - luis-client - luka @@ -3142,10 +3204,9 @@ broken-packages: - macos-corelibs - macrm - madlang - - mad-props - mage - - MagicHaskeller - magic-tyfams + - magma - mailchimp - mailchimp-subscribe - makedo @@ -3156,10 +3217,10 @@ broken-packages: - mandulia - mangopay - mapalgebra - - map-classes - map-exts - Mapping - mappy + - map-reduce-folds - MapWith - markdown-kate - marked-pretty @@ -3186,9 +3247,11 @@ broken-packages: - maybench - MaybeT - MaybeT-monads-tf + - MaybeT-transformers - MazesOfMonad - MBot - mbox-tools + - mbox-utility - mbug - mcl - mcm @@ -3206,7 +3269,6 @@ broken-packages: - Mecha - mechs - Mechs - - medea - mediabus - mediawiki - medium-sdk-haskell @@ -3221,10 +3283,12 @@ broken-packages: - meminfo - memoization-utils - memo-ptr + - memorable-bits - memorypool - memo-sqlite - menoh - menshen + - mercury-api - mergeful-persistent - mergeless-persistent - messagepack-rpc @@ -3243,6 +3307,8 @@ broken-packages: - MHask - mi - miconix-test + - microbase + - microformats2-parser - microgroove - microlens-each - micrologger @@ -3250,9 +3316,8 @@ broken-packages: - microsoft-translator - mida - midi-simple - - midisurface - midi-utils - - migrant-core + - migrant-postgresql-simple - mikmod - mikrokosmos - miku @@ -3269,6 +3334,7 @@ broken-packages: - minst-idx - mios - MIP + - mirror-tweet - mismi-s3-core - miso-action-logger - miso-examples @@ -3280,12 +3346,12 @@ broken-packages: - ml-w - mm2 - mmsyn2 - - mmsyn3 - mmtf - mmtl - Mobile-Legends-Hack-Cheats - - mockazo - mock-httpd + - modbus-tcp + - model - modelicaparser - modular-prelude - module-management @@ -3299,15 +3365,16 @@ broken-packages: - monadacme - monad-atom - monad-atom-simple - - monad-bayes - monad-branch - - MonadCatchIO-transformers + - MonadCatchIO-mtl + - MonadCatchIO-transformers-foreign - monad-choice - MonadCompose + - monad-control-aligned + - monadcryptorandom - monad-fork - - monad-http - monadiccp - - monad-interleave + - monadic-recursion-schemes - monad-introspect - Monadius - monad-levels @@ -3316,6 +3383,7 @@ broken-packages: - monadloc-pp - monad-log - monadlog + - monad-logger-syslog - monad-lrs - monad-mersenne-random - monad-mock @@ -3325,8 +3393,8 @@ broken-packages: - monad-persist - monadplus - monad-ran + - MonadRandomLazy - monad-recorder - - monads-fd - MonadStack - monad-statevar - monad-ste @@ -3334,9 +3402,9 @@ broken-packages: - monad-task - monad-throw-exit - monad-timing + - monad-tree - monad-tx - monad-unify - - monad-unlift - monad-wrap - Monatron - mondo @@ -3349,36 +3417,32 @@ broken-packages: - monoid-owns - monoidplus - monoids - - monomer-hagrid - monopati - monus - monzo + - moo-nad - morfette - morfeusz - - morloc - - morpheus-graphql-core + - morpheus-graphql-cli - morphisms-functors - morphisms-objects - morte - - mosaico-lib - - motor + - mortred + - motor-reflection - mount - movie-monad - - mpeff - mpppc - mpris - mpvguihs - mqtt - mqtt-hs - - mr-env - mrifk - mrm - ms - msgpack - - msgpack-binary - - msgpack-persist + - msgpack-types - msh - - msi-kb-backlit + - mssql-simple - MTGBuilder - mtgoxapi - mtl-c @@ -3391,7 +3455,6 @@ broken-packages: - MuCheck - mud - mudbath - - muesli - mulang - multext-east-msd - multiaddr @@ -3401,18 +3464,19 @@ broken-packages: - multipass - multipath - multiplate-simplified - - multipool-persistent-postgresql + - multipool - multirec - - multivariant + - multistate - Munkres-simple - muon + - murmur - mu-schema - musicScroll - music-util - musicxml - mustache2hs - mustache-haskell - - mutable-lens + - mutable - mvc - mxnet - mxnet-nnvm @@ -3425,10 +3489,11 @@ broken-packages: - mysql-simple-quasi - mystem - my-test-docs - - mywatch + - mywork - myxine-client - mzv - n2o-protocols + - NaCl - nagios-plugin-ekg - named-binary-tag - named-lock @@ -3436,6 +3501,7 @@ broken-packages: - named-sop - namelist - nanoAgda + - nano-cryptr - nanocurses - nano-hmac - nano-md5 @@ -3454,7 +3520,6 @@ broken-packages: - nats-client - nat-sized-numbers - natural - - NaturalLanguageAlphabets - NaturalSort - naver-translate - nbt @@ -3467,6 +3532,7 @@ broken-packages: - neither - neither-data - neko-lib + - neko-obfs - Neks - neptune-backend - nero @@ -3475,13 +3541,11 @@ broken-packages: - nestedmap - nested-sequence - netclock - - netcore - netease-fm - netrium - NetSNMP - netspec - net-spider - - nettle-openflow - netwire-input-javascript - netwire-vinylglfw-examples - network-address @@ -3493,9 +3557,10 @@ broken-packages: - network-bytestring - network-carbon - network-dbus - - network-dns - networked-game - network-house + - network-manager-tui + - network-messagepack-rpc-websocket - network-metrics - network-msg - network-msgpack-rpc @@ -3521,13 +3586,16 @@ broken-packages: - next-ref - nextstep-plist - NGrams + - ngrams-loader - ngx-export-log - niagra - nibblestring - nice-html - nicovideo-translator + - nist-beacon - nitro - nix-delegate + - nixdu - nix-eval - nix-freeze-tree - nixfromnpm @@ -3543,7 +3611,7 @@ broken-packages: - nofib-analyse - nofib-analyze - noise - - nom + - noli - NonEmpty - non-empty-containers - nonempty-lift @@ -3551,7 +3619,7 @@ broken-packages: - noodle - no-role-annots - notcpp - - not-gloss-examples + - notmuch-haskell - NoTrace - notzero - np-linear @@ -3563,25 +3631,26 @@ broken-packages: - nullary - null-canvas - nullpipe - - numbered-semigroups - NumberSieves - NumberTheory - - numerals-base - - numeric-ode - numeric-qq - numeric-ranges - numhask-free - numhask-histogram - numhask-prelude + - numtype + - numtype-tf - Nutri - nvim-hs-ghcid + - NXT - NXTDSL - nyan-interpolation-core - nylas - nyx-game + - oanda-rest-api - oasis-xrd - - oauth2-jwt-bearer - oauthenticated + - obd - Object - ObjectIO - ocaml-export @@ -3590,8 +3659,13 @@ broken-packages: - oden-go-packages - oeis2 - OGL + - ogma-language-c + - ogma-language-cocospec + - ogma-language-smv - ogmarkup + - ohloh-hs - oi + - okapi - old-version - om-actor - omaketex @@ -3601,13 +3675,13 @@ broken-packages: - Omega - om-elm - om-fail - - om-fork - - om-http - om-http-logging - omnifmt + - om-plugin-imports + - om-show + - om-time - on-a-horse - onama - - ONC-RPC - on-demand-ssh-tunnel - oneormore - onpartitions @@ -3618,9 +3692,11 @@ broken-packages: - opaleye-trans - open-adt - OpenAFP - - openai-servant + - openai-hs + - openapi3-code-generator - openapi-petstore - openapi-typed + - opencc - opench-meteo - OpenCL - OpenCLRaw @@ -3636,13 +3712,12 @@ broken-packages: - open-haddock - openid-connect - open-pandoc - - openpgp - open-signals - opensoundcontrol-ht - openssh-protocol + - opentelemetry-extra - opentelemetry-http-client - opentheory-char - - opentok - opentype - open-typerep - OpenVGRaw @@ -3657,18 +3732,18 @@ broken-packages: - options-time - optparse-applicative-simple - optparse-helper - - orbits + - optstream - orc - orchestrate - OrchestrateDB - ordered - order-statistics - - ordinal - Ordinary - ordrea - oref - organize-imports - orgmode + - orgmode-parse - origami - orion-hs - orizentic @@ -3677,12 +3752,15 @@ broken-packages: - oscpacking - oset - Oslo-Vectize + - OSM - osm-conduit - oso2pdf - osx-ar - ot - OTP - ottparse-pretty + - overeasy + - overload - overloaded - overloaded-records - overture @@ -3697,6 +3775,7 @@ broken-packages: - packedstring - packer-messagepack - packman + - packstream - packunused - pacman-memcache - padic @@ -3740,8 +3819,10 @@ broken-packages: - papillon - pappy - paragon + - Parallel-Arrows-Definition - parallel-tasks - parameterized-data + - parameterized-utils - paranoia - parco - parcom-lib @@ -3752,13 +3833,13 @@ broken-packages: - PArrows - Parry - parse - - parseargs - parsec2 - parsec3 - parsec-free - parsec-parsers - parsec-pratt - parseerror-eq + - parse-gcstats - parsely - parser241 - parser-combinators-tests @@ -3767,10 +3848,10 @@ broken-packages: - parsers-megaparsec - parser-unbiased-choice-monad-embedding - parsimony - - parsley-core + - parsnip - partage + - partial-lens - partial-records - - partial-semigroup-hedgehog - partly - passage - passman @@ -3780,12 +3861,14 @@ broken-packages: - pasta - pastis - pasty + - patat - patches-vector - Pathfinder - pathfindingcore - PathTree - patrol - patronscraper + - pattern-trie - paypal-adaptive-hoops - paypal-api - paypal-rest-client @@ -3799,9 +3882,8 @@ broken-packages: - PCLT - pcre2 - pcre-light-extra - - pdfname + - pdfinfo - pdf-slave-template - - pdfsplit - pdf-toolbox-viewer - pdftotext - pdynload @@ -3812,10 +3894,10 @@ broken-packages: - peggy - pencil - penntreebank-megaparsec - - penrose - percent-encoder - perceptron - peregrin + - perf - PerfectHash - perfect-vector-shuffle - perhaps @@ -3832,11 +3914,11 @@ broken-packages: - persistent-generic - persistent-mongoDB - persistent-odbc - - persistent-protobuf - persistent-ratelimit - persistent-stm - persistent-template-classy - persistent-zookeeper + - persist-state - persona - pesca - pez @@ -3846,6 +3928,7 @@ broken-packages: - pg-harness - pg-harness-server - pg-recorder + - pgsql-simple - pg-store - pgstream - pg-transact @@ -3873,23 +3956,21 @@ broken-packages: - pi-forall - pig - pi-hoole + - pi-lcd + - pinboard - pinch-gen - pinchot - pine - Pipe - pipes-async - pipes-bgzf - - pipes-break - pipes-brotli - - pipes-bzip - pipes-category - - pipes-cborg - pipes-cereal - pipes-core - pipes-errors - pipes-interleave - pipes-io - - pipes-network - pipes-protolude - pipes-rt - pipes-s3 @@ -3898,13 +3979,13 @@ broken-packages: - pipes-transduce - pipes-vector - pipes-zeromq4 - - pipes-zlib - Piso - pit - pivotal-tracker - pixela - pixelated-avatar-generator - pixel-printer + - pixiv - pkcs10 - pkcs7 - pkggraph @@ -3919,7 +4000,6 @@ broken-packages: - platinum-parsing - PlayingCards - playlists - - plex - plist - plist-buddy - plivo @@ -3928,6 +4008,8 @@ broken-packages: - plot-gtk3 - plot-gtk-ui - plot-lab + - plots + - plow-log - plugins - plugins-multistage - plumbers @@ -3941,8 +4023,9 @@ broken-packages: - pointfree-fancy - pointful - pointless-haskell + - poke - pokemon-go-protobuf-types - - poker + - poker-base - poker-eval - pokitdok - polar-configfile @@ -3954,14 +4037,18 @@ broken-packages: - poly-control - polydata-core - polynom + - polynomial - polysemy-check - polysemy-keyed-state - polysemy-kvstore-jsonfile - - polysemy-log-co - - polysemy-managed + - polysemy-methodology-co-log - polysemy-mocks + - polysemy-path - polysemy-readline - - polysemy-scoped-fs + - polysemy-req + - polysemy-socket + - polysemy-video + - polysemy-vinyl - polytypeable - pomaps - pomohoro @@ -3971,36 +4058,36 @@ broken-packages: - pool - pool-conduit - pop3-client - - popkey - poppler + - porpoise - portager - porte - PortFusion - - portray-pretty - - portray-prettyprinter - posit - positron - posix-acl - posix-api - posix-realtime - posix-waitpid - - posplyu - postcodes - postgres-embedded - PostgreSQL + - postgresql-common + - postgresql-cube - postgresql-lo-stream - postgresql-ltree - postgresql-named + - postgresql-orm - postgresql-query + - postgresql-replicant - postgresql-resilient - postgresql-simple-bind + - postgresql-simple-migration - postgresql-simple-named - postgresql-simple-sop - - postgresql-transactional + - postgresql-tx-monad-logger - postgresql-tx-simple - - postgresql-tx-squeal - postgresql-typed-lifted - - postgrest - postgres-tmp - postgrest-ws - postgres-websockets @@ -4009,6 +4096,7 @@ broken-packages: - postmaster - potato-tool - potoki-core + - powerdns - powermate - powerpc - powerqueue-levelmem @@ -4034,6 +4122,7 @@ broken-packages: - presburger - present - press + - pretty-compact - pretty-ghci - pretty-ncols - prettyprinter-vty @@ -4043,17 +4132,17 @@ broken-packages: - prime - primes-type - prim-instances + - PrimitiveArray - PrimitiveArray-Pretty - primitive-atomic - - primitive-containers - primitive-convenience - primitive-foreign - primitive-indexed - primitive-maybe - primitive-simd + - primitive-sort - primitive-stablename - prim-ref - - prim-spoon - pringletons - printcess - print-debugger @@ -4080,9 +4169,13 @@ broken-packages: - progress-meter - progress-reporting - proj4-hs-bindings + - project-forge - projectile + - project-m36 - prolens - prolog + - prometheus-effect + - prometheus-proc - promise - pronounce - proof-combinators @@ -4092,7 +4185,10 @@ broken-packages: - property-list - prosidy - prosper + - proteaaudio + - proteaaudio-sdl - protocol + - protocol-buffers - protocol-buffers-fork - proto-lens-combinators - protolude-lifted @@ -4102,15 +4198,17 @@ broken-packages: - provenience - proxy-kindness - proxy-mapping + - prune-juice - psc-ide - pseudo-trie + - psi - psx - PTQ + - pub - publicsuffix - publicsuffixlistcreate - publish - pubnub - - pubsub - pugixml - pugs-DrIFT - pugs-HsSyck @@ -4118,7 +4216,8 @@ broken-packages: - Pup-Events-Server - pure-io - pure-priority-queue - - purescript + - purescript-ast + - purescript-cst - purescript-tsd-gen - pure-zlib - pushbullet @@ -4129,12 +4228,10 @@ broken-packages: - push-notifications - putlenses - puzzle-draw - - pvector - pyffi - pyfi - python-pickle - q4c12-twofinger - - qbe - qc-oi-testgenerator - qd - qed @@ -4143,29 +4240,30 @@ broken-packages: - QIO - QLearn - qlinear - - qnap-decrypt + - qrcode - qr-imager - qsem - qt - QuadEdge - QuadTree + - qualified-imports-plugin - quandl-api - - quantfin - quantification - quantum-arrow - quarantimer - - qudb - quenya-verb - querystring-pickle - questioner - quibble-core - QuickAnnotate + - quickbooks - quickcheck-arbitrary-template - - quickcheck-lockstep - quickcheck-property-comb - quickcheck-property-monad - quickcheck-rematch - quickcheck-report + - QuickCheckVariant + - quickcheck-webdriver - quickjs-hs - QuickPlot - quickpull @@ -4185,21 +4283,22 @@ broken-packages: - radium - radium-formula-parser - radix + - radix-tree - rados-haskell - raft - rakhana - rakuten - ralist - raml - - randfile - rando - random-access-list - random-derive - RandomDotOrg - random-eff - Randometer - - random-extras + - random-source - random-stream + - random-string - rand-vars - Range - rangemin @@ -4215,7 +4314,6 @@ broken-packages: - raz - rbst - rclient - - rdf - react-flux - react-haskell - reaction-logic @@ -4230,6 +4328,7 @@ broken-packages: - readability - read-bounded - read-ctags + - reader-soup - read-io - readline-statevar - readme-lhs @@ -4240,11 +4339,9 @@ broken-packages: - reason-export - record - record-encode - - record-impl - records + - records-sop - record-wrangler - - recursion-schemes-ext - - recursion-schemes-ix - recursors - red-black-record - redis-hs @@ -4257,9 +4354,11 @@ broken-packages: - refcount - Referees - references + - ref-extras - refined-http-api-data - refined-with - reflection-extras + - reflex-backend-socket - reflex-basic-host - reflex-dom-ace - reflex-dom-contrib @@ -4269,10 +4368,10 @@ broken-packages: - reflex-dom-svg - reflex-external-ref - reflex-fsnotify - - reflex-gadt-api - reflex-gi-gtk - reflex-gloss - reflex-jsx + - reflex-libtelnet - reflex-orphans - reflex-sdl2 - reflex-test-host @@ -4282,6 +4381,7 @@ broken-packages: - reformat - refresht - refty + - refurb - reg-alloc - regex-dfa - regexdot @@ -4290,7 +4390,6 @@ broken-packages: - regex-posix-unittest - regexpr-symbolic - regexqq - - regex-rure - regex-tdfa-pipes - regex-tdfa-quasiquoter - regex-tdfa-rc @@ -4309,7 +4408,7 @@ broken-packages: - reified-records - reify - relacion - - relapse + - relation - relevant-time - reload - remark @@ -4336,8 +4435,9 @@ broken-packages: - req-conduit - request - request-monad + - require - req-url-extra - - reserve + - rescue - reservoir - resolve - resolve-trivial-conflicts @@ -4350,9 +4450,9 @@ broken-packages: - resumable-exceptions - rethinkdb - rethinkdb-client-driver - - rethinkdb-wereHamster - retryer - reverse-geocoding + - reverse-list - reversi - ReviewBoard - rewrite-inspector @@ -4360,10 +4460,11 @@ broken-packages: - rfc-prelude - r-glpk-phonetic-languages-ukrainian-durations - rhbzquery + - rhine - riak - riak-protobuf-lens - - rib - ribbit + - rib-core - RichConditional - ridley - riemann @@ -4377,20 +4478,20 @@ broken-packages: - rivers - rivet-migration - rivet-simple-deploy - - RJson - Rlang-QQ - - rle - rlglue - RLP - rl-satton - - RNAdraw - robin - robots-txt - roc-cluster + - roc-id + - roguestar - roku-api - rollbar-client - rollbar-hs - roller + - roman-numerals - ron - rope - rosebud @@ -4398,6 +4499,7 @@ broken-packages: - rosmsg - rosso - rotating-log + - rounded - rounding - roundtrip-aeson - rowrecord @@ -4412,6 +4514,7 @@ broken-packages: - RtMidi - rtnetlink - rtorrent-rpc + - rtorrent-state - rts-loader - ruby-marshal - ruby-qq @@ -4419,6 +4522,7 @@ broken-packages: - ruin - runhs - runmany + - runtime-instances - rustls - rws - RxHaskell @@ -4431,15 +4535,18 @@ broken-packages: - safe-freeze - safe-globals - safeint + - safeio - safe-lazy-io - safe-length + - safe-money-xmlbf - safepath - safe-printf - saferoute - safe-tensor + - safe-wild-cards - sajson - sakuraio-platform - - salak-toml + - salak - Salsa - salvia-protocol - sandlib @@ -4452,14 +4559,14 @@ broken-packages: - satyros - savage - sax - - sbvPlugin + - sbv - sc2-proto - scale - scaleimage - scalendar + - s-cargot-letbind - scc - - scgi - - schedule + - schedevr - schedule-planner - schedyield - schemas @@ -4482,6 +4589,7 @@ broken-packages: - ScratchFs - script-monad - scrobble + - scroll-list - scrz - scythe - scyther-proof @@ -4489,11 +4597,10 @@ broken-packages: - sdl2-cairo-image - sdl2-compositor - sdl2-fps - - SDL-mpeg + - sdp - sdr - seacat - seakale - - search - sec - secdh - seclib @@ -4501,10 +4608,12 @@ broken-packages: - secp256k1 - secp256k1-legacy - secret-santa + - SecureHash-SHA3 + - secure-memory - secure-sockets - secureUDP - SegmentTree - - selda-json + - selda-postgresql - selectors - selenium - selinux @@ -4515,15 +4624,17 @@ broken-packages: - Semigroup - semigroupoids-syntax - semigroups-actions + - semilattices - sendgrid-haskell - sendgrid-v3 - sensu-run - sentry + - seonbi - separated - SeqAlign - sequent-core + - sequential-index - serialize-instances - - serialport - serokell-util - servant-aeson-specs - servant-auth-cookie @@ -4536,20 +4647,22 @@ broken-packages: - servant-docs-simple - servant-elm - servant-errors + - servant-event-stream - servant-gdp - servant-generate - servant-generic - servant-github - servant-github-webhook - - servant-haxl-client - servant-hmac-auth - servant-htmx + - servant-http2-client + - servant-iCalendar + - servant-jquery - servant-kotlin - servant-mock - servant-namedargs - servant-nix - servant-pandoc - - servant-polysemy - servant-pool - servant-proto-lens - servant-purescript @@ -4563,14 +4676,17 @@ broken-packages: - servant-stache - servant-static-th - servant-streaming - - servant-streamly - - servant-util + - servant-tracing + - servant-typed-error - servant-wasm + - servant-xml - servant-yaml - servant-zeppelin - server-generic + - serversession-backend-acid-state - serversession-backend-persistent - services + - serviette - ses-html-snaplet - SessionLogger - sessions @@ -4583,6 +4699,7 @@ broken-packages: - sexp - sext - SFML + - sfml-audio - sfmt - sfnt2woff - SG @@ -4591,18 +4708,14 @@ broken-packages: - sh2md - shade - shadower - - shady-gen - - shake-cabal - shake-cabal-build - shake-dhall - shake-extras - shake-minify - - shake-pack - shake-path - shake-persist - shakespeare-babel - shakespeare-sass - - shapes - shared-buffer - shared-fields - sha-streams @@ -4616,12 +4729,13 @@ broken-packages: - shivers-cfg - shoap - shopify + - shortbytestring - shortcut-links - shorten-strings - short-vec - show-prettyprint - - Shpadoinkle-backend-snabbdom - Shpadoinkle-console + - Shpadoinkle-debug - Shpadoinkle-isreal - shwifty - sifflet @@ -4629,7 +4743,6 @@ broken-packages: - signable - signable-haskell-protoc - signed-multiset - - significant-figures - simd - simfin - simple-actors @@ -4641,7 +4754,6 @@ broken-packages: - simpleconfig - simple-css - simple-download - - simple-effects - simple-eval - simple-form - simple-genetic-algorithm @@ -4649,6 +4761,7 @@ broken-packages: - simple-index - simpleirc - simple-log + - simple-logging - simple-money - simple-neural-networks - simplenote @@ -4668,12 +4781,15 @@ broken-packages: - simplexmq - simple-zipper - simplistic-generics + - singlethongs - singleton-dict + - singletons-base - singleton-typelits - single-tuple - singnal - singular-factory - sink + - siphash - sitepipe - sixfiguregroup - sized-grid @@ -4685,24 +4801,25 @@ broken-packages: - skeletal-set - skell - skemmtun + - skews - skulk - skylighting-extensions - - skylighting-format-ansi + - skylighting-lucid - skype4hs - slack - slack-api - slack-notify-haskell - slack-verify - - slack-web - - slave-thread - sliceofpy - - slick + - slidemews - Slides - slim - sloane - sloth - slot-lambda - slug + - slugger + - slugify - smallarray - small-bytearray-builder - smallcaps @@ -4713,6 +4830,7 @@ broken-packages: - smartcheck - smartconstructor - smartGroup + - smash - sme - smerdyakov - smiles @@ -4721,6 +4839,7 @@ broken-packages: - smt-lib - SmtLib - smtlib2 + - smtlib-backends - SMTPClient - smtp-mail-ng - smtps-gmail @@ -4730,50 +4849,52 @@ broken-packages: - snake - snake-game - snap-accept - - snap-blaze-clay + - snap-auth-cli - snap-configuration-utilities - snap-error-collector - snap-language - snaplet-acid-state - snaplet-amqp + - snaplet-auth-acid + - snaplet-coffee - snaplet-css-min - snaplet-environments - snaplet-hslogger - snaplet-influxdb - snaplet-mandrill - snaplet-mongodb-minimalistic + - snaplet-mysql-simple - snaplet-postgresql-simple + - snaplet-recaptcha - snaplet-redis - snaplet-sass - snaplet-scoped-session - snaplet-ses-html - - snaplet-sqlite-simple + - snaplet-sqlite-simple-jwt-auth - snaplet-typed-sessions + - snap-loader-dynamic - snap-predicates - - snappy-conduit + - snappy - snap-routes - snap-stream - snap-testing + - snap-utils - snap-web-routes - SNet - snipcheck - snorkels - - snowchecked - snowtify - socket-activation - socketed - socketio - - sockets-and-pipes - socket-sctp - - socketson - socket-unix - sodium - soegtk - softfloat-hs + - solar - solga - - sonic-visualiser - Sonnex - - SoOSiM - sorted - sorting - sorty @@ -4789,7 +4910,6 @@ broken-packages: - sparsecheck - sparse-lin-alg - sparse-tensor - - spartacon - special-functors - special-keys - spectacle @@ -4800,7 +4920,7 @@ broken-packages: - spir-v - splay - splaytree - - splines + - splint - split-morphism - splitter - Spock-api-ghcjs @@ -4809,17 +4929,16 @@ broken-packages: - spoty - Sprig - spritz - - sproxy - - sproxy-web - spsa - spy - sqlcipher - sqlite + - sqlite-easy - sqlite-simple-errors - sql-simple - sqlvalue-list - srcinst - - sr-extra + - srt-dhall - sscan - ssh - ssh-tunnel @@ -4835,13 +4954,14 @@ broken-packages: - stackage-to-hackage - stackage-types - stack-bump + - stackcollapse-ghc - stack-fix - - stack-hpc-coveralls - stack-lib - stack-prism - stack-run - stack-type - stack-wrapper + - staged-gg - standalone-derive-topdown - standalone-haddock - starling @@ -4867,7 +4987,6 @@ broken-packages: - stdf - stdio - steambrowser - - steeloverseer - stego-uuid - stemmer - stemmer-german @@ -4876,12 +4995,15 @@ broken-packages: - STL - stm-chunked-queues - stm-firehose + - stm-incremental - stm-promise - stm-stats - stochastic - Stomp + - stooq-api - storable - storable-static-array + - storablevector - stp - str - Strafunski-ATermLib @@ -4891,7 +5013,6 @@ broken-packages: - stratux-types - stream - streamdeck - - streamed - stream-fusion - streaming-benchmarks - streaming-brotli @@ -4905,16 +5026,20 @@ broken-packages: - streaming-png - streaming-postgresql-simple - streaming-sort - - streaming-utils + - streamly-archive - streamly-binary + - streamly-bytestring - streamly-cassava - streamly-examples + - streamly-lmdb - streamly-lz4 - streamly-process - stream-monad - streamproc + - strelka-core - StrictBench - StrictCheck + - strict-containers - strict-ghc-plugin - strictly - strict-tuple-lens @@ -4923,12 +5048,14 @@ broken-packages: - string-isos - stringlike - string-quote + - strings - stringtable-atom - stripe - stripe-core - - stripe-servant - - strongweak + - stripe-hs + - strong-path - structural-traversal + - structured-haskell-mode - structures - stt - stunclient @@ -4936,7 +5063,7 @@ broken-packages: - stylized - subG-instances - subleq-toolchain - - sublists + - submark - subsample - sub-state - subwordgraph @@ -4946,7 +5073,10 @@ broken-packages: - sugar - sugarhaskell - suitable + - summer - summoner + - sump + - sum-type-boilerplate - sunlight - sunroof-compiler - superbubbles @@ -4958,14 +5088,15 @@ broken-packages: - supervisor - supervisors - supplemented - - supply-chain-core - surjective + - sv2v - sv-core - SVD2HS - svfactor - svg-builder-fork - svg-icons - SvgIcons + - svgsym - svgutils - svm-light-utils - svm-simple @@ -4978,17 +5109,15 @@ broken-packages: - swift-lda - swiss - swiss-ephemeris - - SWMMoutGetMB - sws - syb-extras - - SybWidget - syb-with-class-instances-text + - sydtest - syfco - sym - symantic - symantic-cli - symantic-http-client - - symantic-http-pipes - symantic-parser - symantic-xml - symbolic-link @@ -4998,7 +5127,6 @@ broken-packages: - sync-mht - syntax-trees - syntax-trees-fork-bairyn - - synthesizer - Sysmon - system-canonicalpath - system-command @@ -5011,7 +5139,6 @@ broken-packages: - system-test - t3-server - table - - tableaux - tables - Tables - tablestorage @@ -5020,6 +5147,7 @@ broken-packages: - tabloid - tabs - tag-bits + - tagchup - tagged-exception-core - tagged-timers - taggy-lens @@ -5037,22 +5165,25 @@ broken-packages: - tamarin-prover-utils - Tape - tapioca + - taskell - TaskMonad - tasty-auto - tasty-autocollect - tasty-fail-fast - tasty-grading-system - tasty-hedgehog-coverage + - tasty-json - tasty-mgolden - tasty-stats - tasty-test-vector - TastyTLT - TBC - TBit - - tcache-AWS + - TCache - tcod-haskell - tcp - tcp-streams-openssl + - tdd-util - tdigest-Chart - tdoc - tds @@ -5060,6 +5191,7 @@ broken-packages: - technique - teeth - tehepero + - telega - telegram - telegram-api - telegram-types @@ -5075,19 +5207,15 @@ broken-packages: - template-toolkit - template-yj - tempodb - - temporal-csound - tempus - ten - tensor - tensorflow - tensorflow-opgen - tensor-safe - - termbox-banana - termbox-bindings - - termbox-tea - termination-combinators - termplot - - term-rewriting - terntup - tersmu - tesla @@ -5114,24 +5242,23 @@ broken-packages: - text-and-plots - text-ascii - text-builder-linear - - text-compression - text-containers - text-display - text-format-heavy - text-generic-pretty - text-icu-normalized + - text-icu-translit - text-lens - - text-lips - text-markup - text-normal - textocat-api - text-offset - text-position - - text-region - text-register-machine - text-time - text-trie - textual + - text-utf7 - text-utf8 - text-xml-qq - text-zipper-monad @@ -5157,10 +5284,9 @@ broken-packages: - thorn - th-pprint - threadmanager - - thread-supervisor + - threadscope - threepenny-editors - threepenny-gui-contextmenu - - threepenny-gui-flexbox - thrift - Thrift - throttled-io-loop @@ -5170,17 +5296,20 @@ broken-packages: - th-tc - th-to-exp - th-traced + - thumbnail - thumbnail-plus - - thyme - tianbar + - ticket-management - TicTacToe - tictactoe3d - tidal-midi + - tidal-serial - tidal-vis - tie-knot - tiempo - - tiger + - TigerHash - tightrope + - tikzsd - timecalc - time-extras - time-machine @@ -5189,6 +5318,7 @@ broken-packages: - timeout-with-results - timeparsers - TimePiece + - timeplot - time-qq - time-quote - time-recurrence @@ -5197,9 +5327,10 @@ broken-packages: - timeutils - time-w3c - timezone-detect - - tintin - tinyid - TinyLaunchbury + - tinylog + - tinyMesh - tiny-scheduler - tinytemplate - TinyURL @@ -5211,11 +5342,6 @@ broken-packages: - tkhs - tkyprof - tmp-proc-example - - tmp-proc-postgres - - tmp-proc-rabbitmq - - tmp-proc-redis - - tmp-proc-zipkin - - todo - tofromxml - to-haskell - token-bucket @@ -5227,18 +5353,18 @@ broken-packages: - tokstyle - tokyocabinet-haskell - tokyotyrant-haskell - - tomato-rubato-openal - toml - toml-parser - - toml-reader-parse - tonalude - tonaparser - toodles - Top + - topkata - torch - TORCS - to-string-class - TotalMap + - total-maps - touched - Tournament - toxiproxy-haskell @@ -5256,6 +5382,7 @@ broken-packages: - traildb - transactional-events - TransformeR + - transformers-bifunctors - transformers-compose - transformers-lift - transformers-runnable @@ -5271,6 +5398,7 @@ broken-packages: - treap - treemap - treemap-html + - tree-monad - tree-render-text - TreeStructures - tree-traversals @@ -5279,6 +5407,7 @@ broken-packages: - TrendGraph - trhsx - trial-tomland + - tries - trigger - trim - tripLL @@ -5286,7 +5415,6 @@ broken-packages: - tropical - tropical-geometry - true-name - - trust-chain - tsession - tslib - tsparse @@ -5294,22 +5422,24 @@ broken-packages: - tsuntsun - tsvsql - ttask + - ttl-hashtables - ttn-client - tttool - tubes - tuntap + - tuple-append - tuple-gen - tuple-hlist - tupleinstances - tuple-lenses - tuple-morph - - turingMachine - turing-machines - turing-music - turtle-options - tweak - twentefp-websockets - twfy-api-client + - twhs - twilio - twiml - twine @@ -5318,38 +5448,37 @@ broken-packages: - twitchapi - twitter - twitter-feed - - twitter-types - tx - txtblk - TYB - tyfam-witnesses - typalyze - - typeable-mock - typeable-th - - typecheck-plugin-nat-simple - type-combinators + - TypeCompose - typed-digits - typed-encoding - - typedflow - typedquery - typed-time - typed-wire - type-eq + - type-errors-pretty - typehash - type-indexed-queues - type-int - type-interpreter - type-level-bst - - type-level-kv-list-esqueleto - type-level-natural-number-induction - type-level-natural-number-operations + - typelevel-rewrite-rules + - type-level-sets - typelevel-tensor - type-list + - typelits-witnesses - type-of-html-static - typeparams - type-prelude - - type-reflection - - type-rig + - type-safe-avl - types-compat - type-settheory - type-spine @@ -5371,21 +5500,20 @@ broken-packages: - uhttpc - ui-command - unamb-custom - - unbounded-delays-units + - unbeliever + - unboxed - unboxed-containers - unboxed-references - unbreak - - uncertain - unescaping-print - unfix-binders - - unfoldable - unicode-data-names - unicode-data-scripts - unicode-data-security + - unicode-general-category - unicode-prelude - unicode-symbols - unicode-tricks - - union - union-map - uniprot-kb - uniqueid @@ -5393,7 +5521,6 @@ broken-packages: - uniqueness-periods-general - uniqueness-periods-vector - uniqueness-periods-vector-common - - units-attoparsec - unittyped - unitym-yesod - uni-util @@ -5404,8 +5531,8 @@ broken-packages: - unix-handle - unix-process-conduit - unix-recursive + - unlift - unlifted-list - - unliftio-messagebox - unlift-stm - unm-hip - unordered-containers-rematch @@ -5416,6 +5543,7 @@ broken-packages: - unpack-funcs - unroll-ghc-plugin - unsafely + - unsatisfiable - unsequential - unused - uom-plugin @@ -5444,15 +5572,16 @@ broken-packages: - utf8-conversions - utf8-prelude - utf8-validator - - UTFTConverter - util - util-logict - util-plus - util-primitive - uuagc-bootstrap + - uuagc-cabal - uuagc-diagrams - uu-cco - uuid-aeson + - uusi - uvector - uxadt - vabal-lib @@ -5469,7 +5598,6 @@ broken-packages: - variables - variadic - variation - - vaultaire-common - vault-tool - vcache - vcatt @@ -5493,22 +5621,22 @@ broken-packages: - vector-space-opengl - vector-space-points - vector-static - - Vec-Transform - - velma + - vega-view - Verba - verbalexpressions - verdict - verify - verilog - - verismith - - versioning-servant - - vformat-aeson + - verset + - versioning + - vformat + - vgrep - vhd - vhdl - vicinity - - ViennaRNA-extras - viewprof - views + - Villefort - vimus - vintage-basic - vinyl-json @@ -5518,6 +5646,7 @@ broken-packages: - vinyl-vectors - virthualenv - visibility + - visualize-cbn - visual-prof - vitrea - vk-aws-route53 @@ -5537,7 +5666,6 @@ broken-packages: - wai-graceful - wai-handler-devel - wai-handler-fastcgi - - wai-handler-hal - wai-handler-scgi - wai-handler-webkit - wai-hmac-auth @@ -5565,7 +5693,6 @@ broken-packages: - wai-router - wai-routes - wai-secure-cookies - - wai-session-alt - wai-session-mysql - wai-session-postgresql - wai-session-redis @@ -5574,8 +5701,8 @@ broken-packages: - wai-throttler - waitra - wallpaper + - warc - warp-dynamic - - warp-grpc - warp-static - warp-systemd - wasm @@ -5584,33 +5711,30 @@ broken-packages: - wavefront - wavefront-obj - weak-bag + - WeakSets - Weather - weather-api - web3-ipfs - webapi - webapp - WebBits - - webcloud - webcrank - webcrank-dispatch - web-css - - webdriver + - webdriver-angular - webdriver-snoy - web-encodings - WeberLogic - - webex-teams-pipes - webfinger-client - webkitgtk3 - webkit-javascriptcore - webmention - web-output - web-push - - web-rep - Webrexp - web-routes-quasi - web-routes-transformers - webshow - - websockets-rpc - webwire - wedged - WEditor @@ -5624,7 +5748,6 @@ broken-packages: - whim - whiskers - whois - - wholepixels - why3 - WikimediaParser - willow @@ -5634,11 +5757,11 @@ broken-packages: - wireguard-hs - wires - wiring - - witness - witty - wkt - wkt-geom - WL500gPLib + - wl-pprint-console - wl-pprint-extras - WMSigner - woe @@ -5654,10 +5777,10 @@ broken-packages: - wordpass - wordsearch - workdays - - Workflow - workflow-osx - workflow-windows - work-time + - worldturtle - wp-archivebot - wreq-helper - wreq-patchable @@ -5667,7 +5790,7 @@ broken-packages: - writer-cps-morph - wsdl - wsedit - - wsjtx-udp + - wss-client - wtk - wumpus-core - wxdirect @@ -5703,7 +5826,9 @@ broken-packages: - XmlHtmlWriter - xml-parsec - xml-prettify + - xml-prettify-text - xml-query-xml-types + - xml-syntax - xml-to-json - xml-tydom-core - xml-verify @@ -5718,16 +5843,15 @@ broken-packages: - xmonad-windownames - Xorshift128Plus - xorshift-plus - - xournal-types - - xrefcheck - xsact - xsd + - xsha1 - xslt - - xstatic-th - - xturtle + - xxhash - y0l0bot - yabi-muno - yackage + - YACPong - yahoo-finance-api - yahoo-finance-conduit - yahoo-prices @@ -5745,7 +5869,6 @@ broken-packages: - YamlReference - yaml-rpc - yaml-union - - yaml-unscrambler - yampa2048 - yampa-glfw - yampa-gloss @@ -5755,9 +5878,8 @@ broken-packages: - yandex-translate - yaop - yapb - - yarl + - yarn2nix - yarr - - yasi - yate - yaya-test - yaya-unsafe-test @@ -5777,7 +5899,6 @@ broken-packages: - yesod-auth-ldap-mediocre - yesod-auth-ldap-native - yesod-auth-nopassword - - yesod-auth-oauth - yesod-auth-pam - yesod-auth-smbclient - yesod-auth-zendesk @@ -5800,6 +5921,7 @@ broken-packages: - yesod-katip - yesod-links - yesod-lucid + - yesod-middleware-csp - yesod-paginate - yesod-pagination - yesod-pnotify @@ -5822,9 +5944,11 @@ broken-packages: - yhccore - yhseq - yices - - yi-core + - yi-language + - yoctoparsec - yoda - Yogurt + - youtube - yu-core - yuiGrid - yu-tool @@ -5839,6 +5963,8 @@ broken-packages: - zeno - zeolite-lang - zephyr + - zero + - zeromq3-haskell - zeromq4-clone-pattern - zeromq4-conduit - zeromq4-patterns @@ -5851,7 +5977,7 @@ broken-packages: - zipedit - zipkin - ziptastic-core - - zm + - zlib-lens - ZMachine - zmidi-score - zmqat @@ -5862,6 +5988,7 @@ broken-packages: - zsh-battery - zsyntax - ztar + - zuul - Zwaluw - zxcvbn-dvorak - zydiskell diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml index 6376c71171495..bc676fba54602 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml @@ -1,40 +1,40 @@ # pkgs/development/haskell-modules/configuration-hackage2nix.yaml -compiler: ghc-9.0.2 +compiler: ghc-9.2.4 core-packages: + - Cabal-3.6.3.0 - array-0.5.4.0 - - base-4.15.1.0 - - binary-0.8.8.0 - - bytestring-0.10.12.1 - - Cabal-3.4.1.0 - - containers-0.6.4.1 - - deepseq-1.4.5.0 + - base-4.16.3.0 + - binary-0.8.9.0 + - bytestring-0.11.3.1 + - containers-0.6.5.1 + - deepseq-1.4.6.1 - directory-1.3.6.2 - exceptions-0.10.4 - - filepath-1.4.2.1 - - ghc-9.0.2 - - ghc-bignum-1.1 - - ghc-boot-9.0.2 - - ghc-boot-th-9.0.2 + - filepath-1.4.2.2 + - ghc-9.2.4 + - ghc-bignum-1.2 + - ghc-boot-9.2.4 + - ghc-boot-th-9.2.4 - ghc-compact-0.1.0.0 - - ghc-heap-9.0.2 - - ghc-prim-0.7.0 - - ghci-9.0.2 + - ghc-heap-9.2.4 + - ghc-prim-0.8.0 + - ghci-9.2.4 - haskeline-0.8.2 - hpc-0.6.1.0 - integer-gmp-1.1 - - libiserv-9.0.2 + - libiserv-9.2.4 - mtl-2.2.2 - - parsec-3.1.14.0 + - parsec-3.1.15.0 - pretty-1.1.3.6 - process-1.6.13.2 - rts-1.0.2 - - stm-2.5.0.0 - - template-haskell-2.17.0.0 + - stm-2.5.0.2 + - template-haskell-2.18.0.0 - terminfo-0.4.1.5 - text-1.2.5.0 - - time-1.9.3 + - time-1.11.1.1 - transformers-0.5.6.2 - unix-2.7.2.2 - xhtml-3000.2.2.1 @@ -70,29 +70,22 @@ core-packages: default-package-overrides: # gi-gdkx11-4.x requires gtk-4.x, but stackage still restricts gi-gtk to 3.* - gi-gdkx11 < 4 - # reflex-dom-pandoc is only used by neuron which needs a version < 1.0.0.0 - - reflex-dom-pandoc < 1.0.0.0 # 2022-02-18: pin to our current GHC version - ghc-api-compat == 9.0.* # 2021-11-09: ghc-bignum is bundled starting with 9.0.1; only 1.0 builds with GHCs prior to 9.2.1 - ghc-bignum == 1.0 # 1.2.0.0: “Dropped support for GHC <9.2 (might readd it later)” - retrie < 1.2.0.0 - # On the recommendation of hnix author: - # https://github.com/NixOS/nixpkgs/pull/154461#issuecomment-1015511883 - - hnix < 0.15 # needs http-client >= 0.7.11 which isn't part of Stackage LTS 18 - http-client-restricted < 0.0.5 - # Needs dhall 1.41.*, Stackage LTS 19 has 1.40 - - dhall-nix < 1.1.24 - # patch is primarily used by reflex packages not all of which are patch 0.0.7 compatible yet - - patch < 0.0.7 - - reflex < 0.8.2.1 - - reflex-dom-core < 0.7.0.2 # Downgrade hasql-dynamic-statements until hasql 1.6 is in Stackage - hasql-dynamic-statements < 0.3.1.2 # Its dependency brick >= 1.0 is not yet in stackage - brick-skylighting < 1.0 + - rope-utf16-splay < 0.4.0.0 + # hnix < 0.17 (unreleased) needs hnix-store-* 0.5.* + - hnix-store-core == 0.5.0.0 # 2022-06-17: Until hnix 0.17 + - hnix-store-remote == 0.5.0.0 # 2022-06-17: Until hnix 0.17 extra-packages: - Cabal == 2.2.* # required for jailbreak-cabal etc. @@ -101,8 +94,8 @@ extra-packages: - Cabal == 3.4.* # required for cabal-install etc. - Cabal == 3.6.* # required for cabal-install-parsers etc. - Diff < 0.4 # required by liquidhaskell-0.8.10.2: https://github.com/ucsd-progsys/liquidhaskell/issues/1729 - - ShellCheck == 0.7.2 # 2022-02-20: haskell-ci 0.14 needs this - aeson < 2 # required by pantry-0.5.2 + - apply-refact == 0.9.* # 2022-12-12: needed for GHC < 9.2 - attoparsec == 0.13.* # 2022-02-23: Needed to compile elm for now - base16-bytestring < 1 # required for cabal-install etc. - basement < 0.0.15 # 2022-08-30: last version to support GHC < 8.10 @@ -111,7 +104,6 @@ extra-packages: - brick == 1.3 # 2022-11-03: needed by swarm 0.2.0.0 - brittany == 0.13.1.2 # 2022-09-20: needed for hls on ghc 8.8 - cabal-install-parsers < 0.5 # 2022-08-31: required by haskell-ci 0.14.3 - - clay < 0.14 # 2022-03-20: Needed for neuron 1.0.0.0 - crackNum < 3.0 # 2021-05-21: 3.0 removed the lib which sbv 7.13 uses - dependent-map == 0.2.4.0 # required by Hasura 1.3.1, 2020-08-20 - dependent-sum == 0.4 # required by Hasura 1.3.1, 2020-08-20 @@ -122,6 +114,7 @@ extra-packages: - fourmolu == 0.3.0.0 # 2022-09-21: needed for hls on ghc 8.8 - ghc-api-compat == 8.10.7 # 2022-02-17: preserve for GHC 8.10.7 - ghc-api-compat == 8.6 # 2021-09-07: preserve for GHC 8.8.4 + - ghc-exactprint == 0.6.* # 2022-12-12: needed for GHC < 9.2 - ghc-lib == 8.10.7.* # 2022-02-17: preserve for GHC 8.10.7 - ghc-lib == 9.2.* # 2022-02-17: preserve for GHC 9.2 - ghc-lib-parser == 8.10.7.* # 2022-02-17: preserve for GHC 8.10.7 @@ -136,16 +129,16 @@ extra-packages: - hinotify == 0.3.9 # for xmonad-0.26: https://github.com/kolmodin/hinotify/issues/29 - hlint == 3.2.8 # 2022-09-21: needed for hls on ghc 8.8 - hlint == 3.4.1 # 2022-09-21: needed for hls with ghc-lib-parser 9.2 - - hnix-store-core == 0.5.0.0 # 2022-06-17: Until hnix 0.17 - - hnix-store-remote == 0.5.0.0 # 2022-06-17: Until hnix 0.17 - hpack == 0.35.0 # 2022-09-29: Needed for stack-2.9.1 - hspec < 2.8 # 2022-04-07: Needed for tasty-hspec 1.1.6 - hspec-core < 2.8 # 2022-04-07: Needed for tasty-hspec 1.1.6 - hspec-discover < 2.8 # 2022-04-07: Needed for tasty-hspec 1.1.6 + - hspec-meta < 2.8 # 2022-12-07: Needed for elmPackages.elm / hspec-discover - hspec-golden == 0.1.* # 2022-04-07: Needed for elm-format - immortal == 0.2.2.1 # required by Hasura 1.3.1, 2020-08-20 - language-docker == 11.0.0 # required by hadolint 2.12.0, 2022-11-16 - language-javascript == 0.7.0.0 # required by purescript + - lens-aeson < 1.2 # 2022-12-17: For aeson < 2.0 compat - lsp == 1.4.0.0 # 2022-09-18: need for dhall-lsp-server 1.1.2 - lsp-types == 1.4.0.1 # 2022-09-18: need for dhall-lsp-server 1.1.2 - mmorph == 1.1.3 # Newest working version of mmorph on ghc 8.6.5. needed for hls @@ -163,7 +156,7 @@ extra-packages: - vty == 5.35.1 # 2022-07-08: needed for glirc-2.39.0.1 - weeder == 2.2.* # 2022-02-21: preserve for GHC 8.10.7 - weeder == 2.3.* # 2022-05-31: preserve for GHC 9.0.2 - - ghc-exactprint == 1.5.0 # 2022-10-06: newer versions of ghc-exactprint require ghc 9.4.2 + - commonmark-extensions < 0.2.3.3 # 2022-12-17: required by emanote 1.0.0.0 (to avoid a bug in 0.2.3.3) package-maintainers: abbradar: @@ -303,13 +296,16 @@ package-maintainers: - ghcide - haskell-language-server - hedgehog + - hledger + - hledger-ui + - hledger-web - hlint - hmatrix - hspec-discover - iCalendar - matrix-client - - neuron - optics + - pandoc - paths - postgresql-simple - reflex-dom @@ -337,26 +333,16 @@ package-maintainers: pacien: - ldgallery-compiler peti: - - cabal-install - - cabal2nix - cabal2spec - - distribution-nixpkgs - funcmp - git-annex - - hackage-db - - hledger - hledger-interest - - hledger-ui - - hledger-web - hopenssl - hsdns - hsemail - hsyslog - - jailbreak-cabal - - language-nix - logging-facade-syslog - nix-paths - - pandoc - structured-haskell-mode - titlecase - xmonad @@ -406,9 +392,17 @@ package-maintainers: - zre sternenseemann: # also maintain upstream package + - cabal2nix + - distribution-nixpkgs + - hackage-db + - language-nix + - jailbreak-cabal - spacecookie - gopher-proxy # other packages I can help out for + - cabal-install + - hledger + - pandoc - systemd - fast-logger - flat @@ -432,17 +426,22 @@ package-maintainers: terlar: - nix-diff turion: - - rhine - - rhine-gloss + - Agda + - dunai - essence-of-live-coding - essence-of-live-coding-gloss - essence-of-live-coding-pulse - essence-of-live-coding-quickcheck - - Agda - - dunai + - essence-of-live-coding-warp - finite-typelits + - has-transformers + - monad-bayes + - monad-schedule - pulse-simple + - rhine + - rhine-gloss - simple-affine-space + - time-domain utdemir: - nix-tree @@ -527,6 +526,7 @@ unsupported-platforms: sdl2-mixer: [ platforms.darwin ] sdl2-ttf: [ platforms.darwin ] sensei: [ platforms.darwin ] + spade: [ platforms.darwin ] # depends on sdl2-mixer, which doesn't work on darwin synthesizer-alsa: [ platforms.darwin ] taffybar: [ platforms.darwin ] emanote: [ x86_64-darwin ] # Depends on stork which is broken on macOS sdk < 10.14 @@ -589,6 +589,7 @@ supported-platforms: linux-namespaces: [ platforms.linux ] lxc: [ platforms.linux ] midi-alsa: [ platforms.linux ] + OrderedBits: [ platforms.x86 ] # lacks implementations for non-x86: https://github.com/choener/OrderedBits/blob/401cbbe933b1635aa33e8e9b29a4a570b0a8f044/lib/Data/Bits/Ordered.hs#L316 password: [ platforms.x86 ] # uses scrypt, which requries x86 password-instances: [ platforms.x86 ] # uses scrypt, which requries x86 reactivity: [ platforms.windows ] diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml index a359d8ef42242..a4364b7d81832 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml @@ -1,4 +1,4 @@ -# Stackage LTS 19.32 +# Stackage LTS 20.4 # This file is auto-generated by # maintainers/scripts/haskell/update-stackage.sh default-package-overrides: @@ -15,27 +15,32 @@ default-package-overrides: - ad-delcont ==0.3.0.0 - adjunctions ==4.4.2 - adler32 ==0.1.2.0 - - advent-of-code-api ==0.2.8.1 + - advent-of-code-api ==0.2.8.2 - aern2-mp ==0.2.11.0 - aern2-real ==0.2.11.0 - aeson ==2.0.3.0 - aeson-attoparsec ==0.0.0 - aeson-better-errors ==0.9.1.1 - aeson-casing ==0.2.0.0 - - aeson-commit ==1.4 + - aeson-combinators ==0.1.0.1 + - aeson-commit ==1.6.0 - aeson-compat ==0.3.10 - aeson-diff ==1.1.0.13 - aeson-extra ==0.5.1.1 - aeson-generic-compat ==0.0.1.3 - - aeson-optics ==1.1.1 + - aeson-iproute ==0.3.0 + - aeson-optics ==1.2.0.1 + - aeson-picker ==0.1.0.6 - aeson-pretty ==0.8.9 - aeson-qq ==0.8.4 - - aeson-schemas ==1.3.5.1 - - aeson-typescript ==0.3.0.1 + - aeson-schemas ==1.4.0.1 + - aeson-typescript ==0.4.2.0 + - aeson-value-parser ==0.19.7 - aeson-yak ==0.1.1.3 - aeson-yaml ==1.1.0.1 - Agda ==2.6.2.2 - agda2lagda ==0.2021.6.1 + - airship ==0.9.5 - al ==0.1.4.2 - alarmclock ==0.7.0.6 - alerts ==0.1.2.0 @@ -43,23 +48,23 @@ default-package-overrides: - alex-meta ==0.3.0.13 - algebra ==4.3.1 - algebraic-graphs ==0.6.1 - - align-audio ==0.0 - Allure ==0.11.0.0 - almost-fix ==0.0.2 - alsa-core ==0.5.0.1 - alsa-mixer ==0.3.0 - alsa-pcm ==0.6.1.1 - - alsa-seq ==0.6.0.8 - alternative-vector ==0.0.0 - alternators ==1.0.0.0 - ALUT ==2.4.0.3 - amqp ==0.22.1 - amqp-utils ==0.6.3.2 + - annotated-exception ==0.2.0.4 - annotated-wl-pprint ==0.7.0 - - ansi-terminal ==0.11.3 - - ansi-terminal-game ==1.8.0.0 + - ansi-terminal ==0.11.4 + - ansi-terminal-game ==1.8.0.1 - ansi-wl-pprint ==0.6.9 - ANum ==0.2.0.2 + - aos-signature ==0.1.1 - apecs ==0.9.4 - apecs-gloss ==0.2.4 - apecs-physics ==0.4.5 @@ -67,24 +72,27 @@ default-package-overrides: - api-maker ==0.1.0.6 - ap-normalize ==0.1.0.1 - appar ==0.1.8 + - appendful ==0.1.0.0 + - appendful-persistent ==0.1.0.0 - appendmap ==0.1.5 - - apply-refact ==0.9.3.0 + - apply-refact ==0.10.0.0 - apportionment ==0.0.0.4 - approximate ==0.3.5 - approximate-equality ==1.1.0.2 - app-settings ==0.2.0.12 - arbor-lru-cache ==0.1.1.1 + - arbtt ==0.12.0.1 - arithmoi ==0.12.0.2 - array-memoize ==0.6.0 - arrow-extras ==0.1.0.1 - arrows ==0.4.4.2 - - ascii ==1.1.3.0 + - ascii ==1.2.3.0 - ascii-case ==1.0.0.11 - ascii-char ==1.0.0.15 - asciidiagram ==1.3.3.3 - ascii-group ==1.0.0.13 - - ascii-numbers ==1.0.0.0 - - ascii-predicates ==1.0.0.10 + - ascii-numbers ==1.1.0.0 + - ascii-predicates ==1.0.1.0 - ascii-progress ==0.3.3.0 - ascii-superset ==1.0.1.13 - ascii-th ==1.0.0.11 @@ -106,40 +114,41 @@ default-package-overrides: - attoparsec ==0.14.4 - attoparsec-base64 ==0.0.0 - attoparsec-binary ==0.2 - - attoparsec-data ==1.0.5.2 + - attoparsec-data ==1.0.5.3 - attoparsec-expr ==0.1.1.2 - attoparsec-iso8601 ==1.0.2.1 - attoparsec-path ==0.0.0.1 - attoparsec-time ==1.0.3 - - audacity ==0.0.2.1 - aur ==7.0.7 + - aura ==3.2.9 - authenticate ==1.3.5.1 - authenticate-oauth ==1.7 + - autodocodec ==0.2.0.1 + - autodocodec-openapi3 ==0.2.1.1 + - autodocodec-schema ==0.1.0.2 + - autodocodec-yaml ==0.2.0.2 - autoexporter ==2.0.0.2 - auto-update ==0.1.6 - - aws-cloudfront-signed-cookies ==0.2.0.10 + - avro ==0.6.1.2 + - aws-cloudfront-signed-cookies ==0.2.0.11 - aws-xray-client ==0.1.0.2 - aws-xray-client-persistent ==0.1.0.5 - aws-xray-client-wai ==0.1.0.2 - backtracking ==0.1.0 - bank-holidays-england ==0.2.0.8 - barbies ==2.0.3.1 - - barrier ==0.1.1 - - base16 ==0.3.2.0 + - base16 ==0.3.2.1 - base16-bytestring ==1.0.2.0 - - base16-lens ==0.1.3.2 - base32 ==0.2.2.0 - - base32-lens ==0.1.1.1 - base32string ==0.9.1 - base58-bytestring ==0.1.0 - base58string ==0.10.0 - base64 ==0.4.2.4 - base64-bytestring ==1.2.1.0 - base64-bytestring-type ==1.0.1 - - base64-lens ==0.3.1 - base64-string ==0.2 - - base-compat ==0.11.2 - - base-compat-batteries ==0.11.2 + - base-compat ==0.12.2 + - base-compat-batteries ==0.12.2 - basement ==0.0.15 - base-orphans ==0.8.7 - base-prelude ==1.6.1 @@ -148,6 +157,8 @@ default-package-overrides: - battleship-combinatorics ==0.0.1 - bazel-runfiles ==0.12 - bbdb ==0.8 + - bcp47 ==0.2.0.6 + - bcp47-orphans ==0.1.0.5 - bcrypt ==0.0.11 - beam-core ==0.9.2.1 - beam-migrate ==0.5.1.2 @@ -157,12 +168,15 @@ default-package-overrides: - bech32-th ==1.1.1 - bench ==1.0.12 - benchpress ==0.2.2.21 + - bench-show ==0.3.2 - bencode ==0.6.1.1 - bencoding ==0.4.5.4 + - benri-hspec ==0.1.0.0 - between ==0.11.0.0 + - bhoogle ==0.1.4.2 - bibtex ==0.1.0.6 - - bifunctors ==5.5.13 - - bimap ==0.4.0 + - bifunctors ==5.5.14 + - bimap ==0.5.0 - bimaps ==0.1.0.2 - bimap-server ==0.1.0.1 - bin ==0.1.2 @@ -175,7 +189,6 @@ default-package-overrides: - binary-list ==1.1.1.2 - binary-orphans ==1.0.3 - binary-parser ==0.5.7.2 - - binary-parsers ==0.2.4.0 - binary-search ==2.0.0 - binary-shared ==0.8.3 - binary-tagged ==0.3.1 @@ -183,11 +196,7 @@ default-package-overrides: - bindings-GLFW ==3.3.2.0 - bindings-libzip ==1.0.1 - bindings-uname ==0.1 - - BiobaseENA ==0.0.0.2 - BiobaseEnsembl ==0.2.0.1 - - BiobaseFasta ==0.4.0.1 - - BiobaseTypes ==0.2.1.0 - - BiobaseXNA ==0.11.1.1 - bitarray ==0.0.1.1 - bits ==0.6 - bitset-word8 ==0.1.1.2 @@ -195,6 +204,8 @@ default-package-overrides: - bitvec ==1.1.3.0 - bitwise-enum ==1.0.1.0 - blake2 ==0.3.0 + - Blammo ==1.1.1.1 + - blank-canvas ==0.7.3 - blanks ==0.5.0 - blas-carray ==0.1.0.1 - blas-comfort-array ==0.0.0.3 @@ -202,34 +213,33 @@ default-package-overrides: - blas-hs ==0.1.1.0 - blaze-bootstrap ==0.1.0.1 - blaze-builder ==0.4.2.2 - - blaze-colonnade ==1.2.2.1 - blaze-html ==0.9.1.2 - blaze-markup ==0.8.2.8 - blaze-svg ==0.3.6.1 - blaze-textual ==0.2.2.1 + - bloodhound ==0.21.0.0 - bm ==0.1.0.2 - bmp ==1.2.6.3 - bnb-staking-csvs ==0.2.1.0 - BNFC ==2.9.4 - BNFC-meta ==0.6.1 - - board-games ==0.3 - bodhi ==0.1.0 - boltzmann-samplers ==0.1.1.0 - bookkeeping ==0.4.0.1 - Boolean ==0.2.4 - - boolean-like ==0.1.1.0 - boolsimplifier ==0.1.8 - boomerang ==1.4.8 - boots ==0.2.0.1 - bordacount ==0.1.0.0 - boring ==0.2 - - both ==0.1.1.2 - bound ==2.0.5 - BoundedChan ==1.0.3.0 - bounded-queue ==1.0.0 + - boundingboxes ==0.2.3 + - bower-json ==1.1.0.0 - boxes ==0.1.5 - - brick ==0.68.1 - - brittany ==0.14.0.2 + - breakpoint ==0.1.2.0 + - brick ==1.4 - broadcast-chan ==0.2.1.2 - brotli ==0.0.0.1 - brotli-streams ==0.0.0.0 @@ -238,52 +248,61 @@ default-package-overrides: - bson-lens ==0.1.1 - buffer-builder ==0.2.4.8 - buffer-pipe ==0.0 + - bugsnag ==1.0.0.1 - bugsnag-haskell ==0.0.4.4 - bugsnag-hs ==0.2.0.9 - - bugzilla-redhat ==1.0.0 + - bugsnag-wai ==1.0.0.1 + - bugsnag-yesod ==1.0.0.1 + - bugzilla-redhat ==1.0.1 - burrito ==2.0.1.2 - butcher ==1.3.3.2 - - buttplug-hs-core ==0.1.0.1 - bv ==0.5 - byteable ==0.1.1 + - bytebuild ==0.3.12.0 - byte-count-reader ==0.10.1.9 - bytedump ==1.0 + - bytehash ==0.1.0.0 - byte-order ==0.1.3.0 - byteorder ==1.0.4 - bytes ==0.17.2 - byteset ==0.1.1.0 + - byteslice ==0.2.7.0 + - bytesmith ==0.3.9.0 - bytestring-builder ==0.10.8.2.0 - bytestring-conversion ==0.3.2 - bytestring-lexing ==0.5.0.9 - bytestring-mmap ==0.2.2 + - bytestring-progress ==1.4 - bytestring-strict-builder ==0.4.5.6 - bytestring-to-vector ==0.3.0.1 - bytestring-tree-builder ==0.2.7.10 - bytestring-trie ==0.2.7 - bz2 ==1.0.1.0 - - bzlib ==0.5.1.0 - bzlib-conduit ==0.3.0.2 - c14n ==0.1.0.2 - c2hs ==0.28.8 - - cabal2spec ==2.6.2 + - cabal2spec ==2.6.3 - cabal-appimage ==0.3.0.5 - - cabal-clean ==0.1.20220814 + - cabal-clean ==0.2.20220819 + - cabal-debian ==5.2.1 - cabal-doctest ==1.0.9 - cabal-file ==0.1.1 - cabal-file-th ==0.2.7 - cabal-flatpak ==0.1.0.3 - - cabal-plan ==0.7.2.1 + - cabal-plan ==0.7.2.3 - cabal-rpm ==2.0.11.1 - Cabal-syntax ==3.6.0.0 - cache ==0.1.3.0 - cached-json-file ==0.1.1 - cacophony ==0.10.1 + - cairo ==0.13.8.2 - calendar-recycling ==0.0.0.1 - - call-alloy ==0.3.0.3 + - call-alloy ==0.4.0.1 + - calligraphy ==0.1.3 + - call-plantuml ==0.0.1.1 - call-stack ==0.4.0 - can-i-haz ==0.3.1.0 - capability ==0.5.0.1 - - capataz ==0.2.1.0 - ca-province-codes ==1.0.0.0 - cardano-coin-selection ==1.0.1 - carray ==0.1.6.8 @@ -291,14 +310,12 @@ default-package-overrides: - casa-types ==0.0.2 - cased ==0.1.0.0 - case-insensitive ==1.2.1.0 - - cases ==0.1.4.1 + - cases ==0.1.4.2 - casing ==0.1.4.1 - cassava ==0.5.3.0 - - cassava-conduit ==0.6.0 - cassava-megaparsec ==2.0.4 - cast ==0.1.0.2 - - caster ==0.0.3.0 - - cayley-client ==0.4.17 + - cayley-client ==0.4.19.2 - cborg ==0.2.8.0 - cborg-json ==0.2.5.0 - cdar-mBound ==0.1.0.4 @@ -306,15 +323,17 @@ default-package-overrides: - cereal ==0.5.8.3 - cereal-conduit ==0.8.0 - cereal-text ==0.1.0.2 + - cereal-unordered-containers ==0.1 - cereal-vector ==0.2.0.1 - cfenv ==0.1.0.0 - - cgi ==3001.5.0.0 - chan ==0.0.4.1 - - ChannelT ==0.0.0.7 - character-cases ==0.1.0.6 - charset ==0.3.9 - charsetdetect-ae ==1.1.0.4 - Chart ==1.9.4 + - Chart-cairo ==1.9.3 + - Chart-diagrams ==1.9.4 + - chart-svg ==0.3.2 - ChasingBottoms ==1.3.1.12 - cheapskate ==0.1.1.2 - cheapskate-highlight ==0.1.0.0 @@ -323,29 +342,22 @@ default-package-overrides: - checkers ==0.6.0 - checksum ==0.0 - chimera ==0.3.2.0 - - chiphunk ==0.1.4.0 - choice ==0.2.2 - chronologique ==0.3.1.3 - chunked-data ==0.3.1 - cipher-aes ==0.2.11 - - cipher-aes128 ==0.7.0.6 - cipher-camellia ==0.0.2 - - cipher-des ==0.0.6 - cipher-rc4 ==0.1.4 - circle-packing ==0.1.0.6 - circular ==0.4.0.3 - - citeproc ==0.6.0.1 - - clash-ghc ==1.6.4 - - clash-lib ==1.6.4 - - clash-prelude ==1.6.4 + - citeproc ==0.8.0.2 - classy-prelude ==1.5.0.2 - classy-prelude-conduit ==1.5.0 - classy-prelude-yesod ==1.5.0 - - clay ==0.14.0 - cleff ==0.3.3.0 - cleff-plugin ==0.1.0.0 - clientsession ==0.9.1.2 - - climb ==0.3.3 + - climb ==0.4.1 - Clipboard ==2.3.2.0 - clock ==0.8.3 - closed ==0.2.0.2 @@ -358,10 +370,8 @@ default-package-overrides: - codec-beam ==0.2.0 - code-conjure ==0.5.2 - code-page ==0.2.1 - - coercible-utils ==0.1.0 - cointracking-imports ==0.1.0.2 - collect-errors ==0.1.5.0 - - colonnade ==1.2.0.2 - Color ==0.3.3 - colorful-monoids ==0.2.1.3 - colorize-haskell ==1.0.1 @@ -378,21 +388,25 @@ default-package-overrides: - commutative ==0.0.2 - comonad ==5.0.8 - comonad-extras ==4.0.1 - - compact ==0.2.0.0 - compactmap ==0.1.4.2.1 - compensated ==0.8.3 - compiler-warnings ==0.1.0 - componentm ==0.0.0.2 - componentm-devel ==0.0.0.2 - composable-associations ==0.1.0.0 + - composite-base ==0.8.2.0 + - composite-binary ==0.8.2.0 + - composite-ekg ==0.8.2.0 + - composite-tuple ==0.1.2.0 + - composite-xstep ==0.1.0.0 - composition ==1.0.2.2 - composition-extra ==2.0.0 + - composition-prelude ==3.0.0.2 - concise ==0.1.0.1 - concurrency ==1.11.0.2 - concurrent-extra ==0.7.0.12 - concurrent-output ==1.10.16 - concurrent-split ==0.0.1.1 - - concurrent-supply ==0.1.8 - cond ==0.4.1.1 - conduino ==0.2.2.0 - conduit ==1.3.4.3 @@ -400,18 +414,17 @@ default-package-overrides: - conduit-algorithms ==0.0.13.0 - conduit-combinators ==1.3.0 - conduit-concurrent-map ==0.1.3 - - conduit-connection ==0.1.0.5 - conduit-extra ==1.3.6 - conduit-parse ==0.2.1.1 - conduit-zstd ==0.0.2.0 - conferer ==1.1.0.0 - conferer-aeson ==1.1.0.2 - - conferer-warp ==1.1.0.0 - ConfigFile ==1.1.4 - config-ini ==0.2.5.0 - configuration-tools ==0.6.1 - configurator ==0.3.0.0 - configurator-export ==0.1.0.1 + - configurator-pg ==0.2.7 - connection ==0.3.1 - connection-pool ==0.2.2 - console-style ==0.0.2.1 @@ -419,7 +432,11 @@ default-package-overrides: - constraints-extras ==0.3.2.1 - constraint-tuples ==0.1.2 - construct ==0.3.1.1 - - containers-unicode-symbols ==0.3.1.3 + - context ==0.2.0.1 + - context-http-client ==0.2.0.1 + - context-resource ==0.2.0.1 + - context-wai-middleware ==0.2.0.1 + - contiguous ==0.6.3.0 - contravariant ==1.5.5 - contravariant-extras ==0.3.5.3 - control-bool ==0.2.1 @@ -430,16 +447,19 @@ default-package-overrides: - cookie ==0.4.5 - copr-api ==0.1.0 - core-data ==0.3.8.0 - - core-program ==0.4.6.4 + - core-program ==0.6.1.1 + - core-telemetry ==0.2.7.0 - core-text ==0.3.8.0 - - countable ==1.0 - - covariance ==0.1.0.6 + - countable ==1.2 + - country ==0.2.3 + - covariance ==0.2.0.1 - cpphs ==1.20.9.1 - cprng-aes ==0.6.1 - cpu ==0.1.2 - cpuinfo ==0.1.0.2 + - cql ==4.0.4 + - cql-io ==1.1.1 - crackNum ==3.2 - - crc32c ==0.0.0 - credential-store ==0.1.2 - criterion ==1.5.13.0 - criterion-measurement ==0.1.4.0 @@ -456,7 +476,7 @@ default-package-overrides: - cryptohash-sha1 ==0.11.101.0 - cryptohash-sha256 ==0.11.102.1 - cryptohash-sha512 ==0.11.101.0 - - cryptonite ==0.29 + - cryptonite ==0.30 - cryptonite-conduit ==0.2.2 - cryptonite-openssl ==0.7 - crypto-pubkey-types ==0.4.3 @@ -477,30 +497,29 @@ default-package-overrides: - curl-runnings ==0.17.0 - currencies ==0.2.0.0 - currency ==0.2.0.0 + - currycarbon ==0.2.1.1 - cursor ==0.3.2.0 - cursor-brick ==0.1.0.1 - cursor-fuzzy-time ==0.0.0.0 - cursor-gen ==0.4.0.0 - - cutter ==0.0 - cyclotomic ==1.1.1 - czipwith ==1.0.1.4 - d10 ==1.0.1.0 - data-accessor ==0.2.3 - data-accessor-mtl ==0.2.0.4 - data-accessor-transformers ==0.2.1.7 + - data-array-byte ==0.1.0.1 - data-binary-ieee754 ==0.4.4 - data-bword ==0.1.0.2 - data-checked ==0.3 - data-clist ==0.2 - data-default ==0.7.1.1 - data-default-class ==0.1.2.0 - - data-default-extra ==0.1.0 - data-default-instances-base ==0.1.0.1 - data-default-instances-bytestring ==0.0.1 - data-default-instances-case-insensitive ==0.0.1 - data-default-instances-containers ==0.0.1 - data-default-instances-dlist ==0.0.1 - - data-default-instances-new-base ==0.0.2 - data-default-instances-old-locale ==0.0.1 - data-default-instances-text ==0.0.1 - data-default-instances-unordered-containers ==0.0.1 @@ -511,6 +530,7 @@ default-package-overrides: - data-endian ==0.1.1 - data-fix ==0.3.2 - data-forest ==0.1.0.9 + - data-functor-logistic ==0.0 - data-has ==0.4.0.0 - data-hash ==0.2.0.1 - data-interval ==2.1.1 @@ -534,7 +554,7 @@ default-package-overrides: - dawg-ord ==0.5.1.2 - dbcleaner ==0.1.3 - DBFunctor ==0.1.2.1 - - dbus ==1.2.22 + - dbus ==1.2.27 - dbus-hslogger ==0.1.0.1 - debian ==4.0.4 - debian-build ==0.10.2.1 @@ -554,19 +574,22 @@ default-package-overrides: - deriveJsonNoPrefix ==0.1.0.1 - derive-topdown ==0.0.3.0 - deriving-aeson ==0.2.8 - - deriving-compat ==0.6.1 - - derulo ==2.0.0.3 + - deriving-compat ==0.6.2 - detour-via-sci ==1.0.0 - df1 ==0.4 - - dhall ==1.40.2 - - dhall-bash ==1.0.39 - - dhall-json ==1.7.9 - - dhall-yaml ==1.2.10 + - dhall ==1.41.2 + - dhall-bash ==1.0.40 + - dhall-json ==1.7.11 + - dhall-yaml ==1.2.11 - di ==1.3 - diagrams ==1.4.0.1 - - diagrams-contrib ==1.4.4 + - diagrams-builder ==0.8.0.5 + - diagrams-cairo ==1.4.2 + - diagrams-canvas ==1.4.1.1 + - diagrams-contrib ==1.4.5 - diagrams-core ==1.5.0.1 - - diagrams-lib ==1.4.5.1 + - diagrams-lib ==1.4.5.2 + - diagrams-postscript ==1.5.1 - diagrams-rasterific ==1.4.2.2 - diagrams-solve ==0.1.3 - diagrams-svg ==1.4.3.1 @@ -577,42 +600,44 @@ default-package-overrides: - digest ==0.0.1.3 - digits ==0.3.1 - di-handle ==1.0.1 - - dimensional ==1.4 + - dimensional ==1.5 - di-monad ==1.3.1 - directory-tree ==0.12.1 - direct-sqlite ==2.3.27 - dirichlet ==0.1.0.7 - discount ==0.1.1 - discover-instances ==0.1.0.0 - - discrimination ==0.4.1 + - discrimination ==0.5 - disk-free-space ==0.1.0.1 - - distributed-static ==0.3.9 - distribution-opensuse ==1.1.3 - distributive ==0.6.2.1 + - diversity ==0.8.1.0 - djinn-lib ==0.0.1.4 + - dl-fedora ==0.9.3 - dlist ==1.0 - dlist-instances ==0.1.1.1 - dlist-nonempty ==0.1.1 - - dns ==4.0.1 + - dns ==4.1.0 + - docker ==0.7.0.1 - dockerfile ==0.2.0 - - doclayout ==0.3.1.1 - - docopt ==0.7.0.7 - - doctemplates ==0.10.0.1 - - doctest ==0.18.2 + - doclayout ==0.4 + - doctemplates ==0.10.0.2 + - doctest ==0.20.1 - doctest-discover ==0.2.0.0 - doctest-driver-gen ==0.3.0.5 - doctest-exitcode-stdio ==0.0 - - doctest-extract ==0.1 - doctest-lib ==0.1 - doctest-parallel ==0.2.5 - doldol ==0.4.1.2 - do-list ==1.0.1 - - domain ==0.1.1.3 - - domain-core ==0.1.0.2 + - domain ==0.1.1.4 + - domain-aeson ==0.1 + - domain-cereal ==0.1 + - domain-core ==0.1.0.3 - domain-optics ==0.1.0.3 - do-notation ==0.1.0.2 - dot ==0.3 - - dotenv ==0.9.0.2 + - dotenv ==0.9.0.3 - dotgen ==0.4.3 - dotnet-timespan ==0.0.1.0 - double-conversion ==2.0.4.1 @@ -626,7 +651,7 @@ default-package-overrides: - dual ==0.1.1.1 - dual-tree ==0.2.3.1 - dublincore-xml-conduit ==0.1.0.2 - - dunai ==0.8.3 + - dunai ==0.9.1 - duration ==0.2.0.0 - dvorak ==0.1.0.0 - dynamic-state ==0.3.1 @@ -639,27 +664,33 @@ default-package-overrides: - echo ==0.1.4 - ecstasy ==0.2.1.0 - ed25519 ==0.0.5.0 + - ede ==0.3.3.0 - edit-distance ==0.2.2.1 - edit-distance-vector ==1.0.0.4 - editor-open ==0.6.0.0 + - effectful ==2.2.1.0 + - effectful-core ==2.2.1.0 + - effectful-plugin ==1.0.0.0 + - effectful-th ==1.0.0.0 - either ==5.0.2 - either-both ==0.1.1.1 - either-unwrap ==1.1 - ekg-core ==0.1.1.7 - elerea ==2.9.0 - elf ==0.31 - - eliminators ==0.8 + - eliminators ==0.9 + - elm2nix ==0.3.0 - elm-bridge ==0.8.1 - elm-core-sources ==1.0.0 - elm-export ==0.6.0.1 - - elynx ==0.6.1.1 - - elynx-markov ==0.6.1.1 - - elynx-nexus ==0.6.1.1 - - elynx-seq ==0.6.1.1 - - elynx-tools ==0.6.1.1 - - elynx-tree ==0.6.1.1 - - email-validate ==2.3.2.16 - - emd ==0.2.0.0 + - elynx ==0.7.0.1 + - elynx-markov ==0.7.0.1 + - elynx-nexus ==0.7.0.1 + - elynx-seq ==0.7.0.1 + - elynx-tools ==0.7.0.1 + - elynx-tree ==0.7.0.1 + - emacs-module ==0.1.1.1 + - email-validate ==2.3.2.18 - emojis ==0.1.2 - enclosed-exceptions ==1.0.3 - ENIG ==0.0.1.0 @@ -668,17 +699,16 @@ default-package-overrides: - enumset ==0.1 - enum-text ==0.5.3.0 - envelope ==0.2.2.0 - - envparse ==0.4.1 + - envparse ==0.5.0 - envy ==2.1.1.0 - eq ==4.3 - - equal-files ==0.0.5.3 - equational-reasoning ==0.7.0.1 - equivalence ==0.4.1 - erf ==2.0.0.0 - errata ==0.4.0.0 - - error ==0.3.0.0 + - error ==1.0.0.0 - errorcall-eq-instance ==0.3.0 - - error-or ==0.2.0.0 + - error-or ==0.3.0 - error-or-utils ==0.2.0 - errors ==2.3.0 - errors-ext ==0.4.2 @@ -689,19 +719,15 @@ default-package-overrides: - essence-of-live-coding-pulse ==0.2.6 - essence-of-live-coding-quickcheck ==0.2.6 - essence-of-live-coding-warp ==0.2.6 - - eventful-core ==0.2.0 - - eventful-memory ==0.2.0 - - eventful-test-helpers ==0.2.0 - event-list ==0.1.2 - eventstore ==1.4.2 - every ==0.0.1 - evm-opcodes ==0.1.2 - exact-combinatorics ==0.2.0.11 - exact-pi ==0.5.0.2 - - exception-hierarchy ==0.1.0.6 + - exception-hierarchy ==0.1.0.7 - exception-mtl ==0.4.0.1 - exception-transformers ==0.4.0.11 - - exception-via ==0.1.0.0 - executable-hash ==0.2.0.4 - executable-path ==0.0.3.1 - exit-codes ==1.0.0 @@ -713,6 +739,7 @@ default-package-overrides: - exp-pairs ==0.2.1.0 - express ==1.0.10 - extended-reals ==0.2.4.0 + - extensible ==0.9 - extensible-effects ==5.0.0.1 - extensible-exceptions ==0.1.1.4 - extra ==1.7.12 @@ -726,13 +753,14 @@ default-package-overrides: - fakefs ==0.3.0.2 - fakepull ==0.3.0.2 - faktory ==1.1.2.4 - - fast-builder ==0.1.3.0 + - fasta ==0.10.4.2 - fast-logger ==3.1.1 - fast-math ==1.0.2 - - fastmemo ==0.1.1 + - fb ==2.1.1.1 - fclabels ==2.0.5.1 + - fdo-notify ==0.3.1 - feature-flags ==0.1.0.1 - - fedora-dists ==2.0.0 + - fedora-dists ==2.1.1 - fedora-haskell-tools ==1.0 - feed ==1.3.2.1 - FenwickTree ==0.1.2.1 @@ -740,12 +768,13 @@ default-package-overrides: - fftw-ffi ==0.1 - fgl ==5.7.0.3 - fields-json ==0.4.0.0 + - filecache ==0.4.1 - file-embed ==0.0.15.0 - file-embed-lzma ==0.0.1 - filelock ==0.1.1.5 - filemanip ==0.3.6.3 - file-modules ==0.1.2.4 - - filepath-bytestring ==1.4.2.1.9 + - filepath-bytestring ==1.4.2.1.12 - file-path-th ==0.1.0.0 - filepattern ==0.1.3 - fileplow ==0.1.0.0 @@ -766,8 +795,8 @@ default-package-overrides: - flac ==0.2.0 - flac-picture ==0.1.2 - flags-applicative ==0.1.0.3 - - flat ==0.4.4 - flat-mcmc ==1.5.2 + - flatparse ==0.3.5.1 - flay ==0.4 - flexible-defaults ==0.0.3 - FloatingHex ==0.5 @@ -779,9 +808,7 @@ default-package-overrides: - fn ==0.3.0.2 - focus ==1.0.3 - focuslist ==0.1.1.0 - - fold-debounce ==0.2.0.9 - - fold-debounce-conduit ==0.2.0.6 - - foldl ==1.4.12 + - foldl ==1.4.13 - folds ==0.7.8 - follow-file ==0.0.3 - FontyFruity ==0.5.3.5 @@ -790,13 +817,14 @@ default-package-overrides: - ForestStructures ==0.0.1.0 - forkable-monad ==0.2.0.3 - forma ==1.2.0 + - formatn ==0.2.1 - format-numbers ==0.1.0.1 - formatting ==7.1.3 - - fortran-src ==0.9.0 + - fortran-src ==0.12.0 - foundation ==0.0.29 - - fourmolu ==0.4.0.0 - - Frames ==0.7.3 - - free ==5.1.9 + - fourmolu ==0.9.0.0 + - freckle-app ==1.3.0.0 + - free ==5.1.10 - free-categories ==0.2.0.2 - freenect ==1.2.1 - freer-simple ==1.2.1.2 @@ -812,7 +840,6 @@ default-package-overrides: - funcmp ==1.9 - function-builder ==0.3.0.1 - functor-classes-compat ==2.0.0.2 - - functor-combinators ==0.4.1.0 - fused-effects ==1.1.2.1 - fusion-plugin ==0.2.5 - fusion-plugin-types ==0.1.0 @@ -824,14 +851,15 @@ default-package-overrides: - gauge ==0.2.5 - gd ==3000.7.3 - gdp ==0.0.3.0 + - gemini-exports ==0.1.0.0 - general-games ==1.1.1 - generic-aeson ==0.2.0.14 - - generic-arbitrary ==0.2.2 + - generic-arbitrary ==1.0.1 - generic-constraints ==1.1.1.1 - - generic-data ==0.9.2.1 + - generic-data ==1.0.0.0 - generic-data-surgery ==0.3.0.0 - generic-deriving ==1.14.2 - - generic-functor ==0.2.0.0 + - generic-functor ==1.1.0.0 - generic-lens ==2.2.1.0 - generic-lens-core ==2.2.1.0 - generic-monoid ==0.1.0.1 @@ -841,11 +869,13 @@ default-package-overrides: - generics-eot ==0.4.0.1 - generics-sop ==0.5.1.2 - generics-sop-lens ==0.2.0.1 - - geniplate-mirror ==0.7.8 - - genvalidity ==1.0.0.1 - - genvalidity-bytestring ==1.0.0.0 - - genvalidity-containers ==1.0.0.0 - - genvalidity-criterion ==1.0.0.0 + - genvalidity ==1.1.0.0 + - genvalidity-aeson ==1.0.0.1 + - genvalidity-appendful ==0.1.0.0 + - genvalidity-bytestring ==1.0.0.1 + - genvalidity-case-insensitive ==0.0.0.1 + - genvalidity-containers ==1.0.0.1 + - genvalidity-criterion ==1.1.0.0 - genvalidity-hspec ==1.0.0.2 - genvalidity-hspec-aeson ==1.0.0.0 - genvalidity-hspec-binary ==1.0.0.0 @@ -853,15 +883,22 @@ default-package-overrides: - genvalidity-hspec-hashable ==1.0.0.0 - genvalidity-hspec-optics ==1.0.0.0 - genvalidity-hspec-persistent ==1.0.0.0 + - genvalidity-mergeful ==0.3.0.0 - genvalidity-mergeless ==0.3.0.0 - - genvalidity-path ==1.0.0.0 + - genvalidity-path ==1.0.0.1 - genvalidity-persistent ==1.0.0.1 - genvalidity-property ==1.0.0.0 - genvalidity-scientific ==1.0.0.0 + - genvalidity-sydtest ==1.0.0.0 + - genvalidity-sydtest-aeson ==1.0.0.0 + - genvalidity-sydtest-hashable ==1.0.0.0 + - genvalidity-sydtest-lens ==1.0.0.0 + - genvalidity-sydtest-persistent ==1.0.0.0 - genvalidity-text ==1.0.0.1 - - genvalidity-time ==1.0.0.0 + - genvalidity-time ==1.0.0.1 + - genvalidity-typed-uuid ==0.1.0.1 - genvalidity-unordered-containers ==1.0.0.0 - - genvalidity-uuid ==1.0.0.0 + - genvalidity-uuid ==1.0.0.1 - genvalidity-vector ==1.0.0.0 - geodetics ==0.1.2 - geojson ==4.1.0 @@ -871,20 +908,20 @@ default-package-overrides: - ghc-check ==0.5.0.8 - ghc-compact ==0.1.0.0 - ghc-core ==0.5.6 - - ghc-events ==0.17.0.3 - - ghc-exactprint ==0.6.4 + - ghc-events ==0.18.0 + - ghc-exactprint ==1.5.0 - ghcid ==0.8.7 - ghci-hexcalc ==0.1.1.0 - ghcjs-codemirror ==0.0.0.2 - ghcjs-perch ==0.3.3.3 - - ghc-lib ==9.0.2.20211226 - - ghc-lib-parser ==9.0.2.20211226 - - ghc-lib-parser-ex ==9.0.0.6 + - ghc-lib ==9.2.5.20221107 + - ghc-lib-parser ==9.2.5.20221107 + - ghc-lib-parser-ex ==9.2.0.4 - ghc-parser ==0.2.4.0 - ghc-paths ==0.1.0.12 - - ghc-prof ==1.4.1.11 + - ghc-prof ==1.4.1.12 - ghc-source-gen ==0.4.3.0 - - ghc-syntax-highlighter ==0.0.7.0 + - ghc-syntax-highlighter ==0.0.8.0 - ghc-tcplugins-extra ==0.4.3 - ghc-trace-events ==0.1.2.6 - ghc-typelits-extra ==0.4.4 @@ -912,27 +949,31 @@ default-package-overrides: - gi-gtksource ==3.0.26 - gi-harfbuzz ==0.0.7 - gi-javascriptcore ==4.0.25 - - ginger ==0.10.4.0 + - gio ==0.13.8.2 - gi-pango ==1.0.27 - githash ==0.1.6.3 - - github ==0.27 + - github ==0.28.0.1 - github-release ==2.0.0.2 - github-rest ==1.1.2 - github-types ==0.2.1 - - github-webhooks ==0.15.0 + - github-webhooks ==0.16.0 + - gitlab-haskell ==1.0.0.1 + - git-lfs ==1.2.0 + - gitlib ==3.1.3 - gitrev ==1.3.1 - gi-vte ==2.91.30 - gi-xlib ==2.0.12 - gl ==0.9 - - glabrous ==2.0.6 - glasso ==0.1.0 - GLFW-b ==3.3.0.0 + - glib ==0.13.8.2 - Glob ==0.10.2 - glob-posix ==0.2.0.1 - - gloss ==1.13.2.1 + - gloss ==1.13.2.2 - gloss-algorithms ==1.13.0.3 + - gloss-examples ==1.13.0.4 - gloss-raster ==1.13.1.2 - - gloss-rendering ==1.13.1.1 + - gloss-rendering ==1.13.1.2 - GLURaw ==2.0.0.5 - GLUT ==2.7.0.16 - gmail-simple ==0.1.0.4 @@ -940,79 +981,79 @@ default-package-overrides: - goldplate ==0.2.0 - google-isbn ==1.0.3 - gopher-proxy ==0.1.1.3 - - gothic ==0.1.8 - gotyno-hs ==1.1.0 - gpolyline ==0.1.0.1 - graph-core ==0.3.0.0 - graphite ==0.10.0.1 + - graphql-client ==1.2.1 - graphs ==0.7.2 - graphula ==2.0.2.2 - graphviz ==2999.20.1.0 - graph-wrapper ==0.2.6.0 - gravatar ==0.8.1 - - greskell ==2.0.0.0 - - greskell-core ==1.0.0.0 - - greskell-websocket ==1.0.0.0 + - gridtables ==0.0.3.0 - groom ==0.1.2.1 - - groundhog ==0.12.0 - - groundhog-postgresql ==0.12 - - groundhog-sqlite ==0.12.0 - - group-by-date ==0.1.0.4 - grouped-list ==0.2.3.0 - groups ==0.5.3 + - gtk ==0.15.7 - gtk2hs-buildtools ==0.13.8.3 + - gtk3 ==0.15.7 - gtk-sni-tray ==0.1.8.1 - gtk-strut ==0.1.3.2 - guarded-allocation ==0.0.1 - hackage-cli ==0.0.3.6 - hackage-db ==2.1.2 - - hackage-security ==0.6.2.2 + - hackage-security ==0.6.2.3 - haddock-library ==1.10.0 - - hadoop-streaming ==0.2.0.3 - hakyll ==4.15.1.1 - hakyll-convert ==0.3.0.4 - - hal ==0.4.10.1 + - hal ==1.0.0.1 - half ==0.3.1 - hall-symbols ==0.1.0.6 - - hamilton ==0.1.0.3 + - hamlet ==1.2.0 - hamtsolo ==1.0.4 - HandsomeSoup ==0.4.2 - handwriting ==0.1.0.3 + - happstack-hsp ==7.3.7.6 + - happstack-jmacro ==7.0.12.4 - happstack-server ==7.7.2 - happstack-server-tls ==7.2.1.3 - happy ==1.20.0 - happy-meta ==0.2.0.11 - - HasBigDecimal ==0.1.1 + - harp ==0.4.3.5 + - HasBigDecimal ==0.2.0.0 - hasbolt ==0.1.6.2 - - hashable ==1.3.5.0 - - hashable-time ==0.3 + - hashable ==1.4.1.0 - hashids ==1.0.2.7 - - hashing ==0.1.0.1 - hashmap ==1.3.3 - - hashtables ==1.2.4.2 + - hashtables ==1.3.1 - haskeline ==0.8.2 - - haskell-awk ==1.2.0.1 - haskell-gi ==0.26.2 - haskell-gi-base ==0.26.3 - haskell-gi-overloading ==1.0 - haskell-lexer ==1.1 - - haskell-lsp-types ==0.24.0.0 + - HaskellNet ==0.6.0.1 + - HaskellNet-SSL ==0.3.4.4 - haskell-src ==1.0.4 - haskell-src-exts ==1.23.1 + - haskell-src-exts-simple ==1.23.0.0 - haskell-src-exts-util ==0.2.5 - haskell-src-meta ==0.8.11 - haskey-btree ==0.3.0.1 - haskintex ==0.8.0.1 - haskoin-core ==0.21.2 + - haskoin-store-data ==0.65.5 - hasktags ==0.72.0 - - hasql ==1.5.1 + - hasql ==1.6.3 + - hasql-dynamic-statements ==0.3.1.2 + - hasql-implicits ==0.1.0.5 - hasql-migration ==0.3.0 - hasql-notifications ==0.2.0.3 - - hasql-optparse-applicative ==0.3.0.9 - - hasql-pool ==0.5.2.2 + - hasql-optparse-applicative ==0.5 + - hasql-pool ==0.8.0.6 - hasql-queue ==1.2.0.2 - - hasql-th ==0.4.0.17 - - hasql-transaction ==1.0.1.1 + - hasql-th ==0.4.0.18 + - hasql-transaction ==1.0.1.2 - has-transformers ==0.1.0.4 - hasty-hamiltonian ==1.3.4 - HaTeX ==3.22.3.1 @@ -1027,7 +1068,7 @@ default-package-overrides: - heaps ==0.4 - heatshrink ==0.1.0.0 - hebrew-time ==0.1.2 - - hedgehog ==1.0.5 + - hedgehog ==1.1.2 - hedgehog-classes ==0.2.5.3 - hedgehog-corpus ==0.2.0 - hedgehog-fakedata ==0.0.1.5 @@ -1040,47 +1081,46 @@ default-package-overrides: - heterocephalus ==1.0.5.7 - hex ==0.2.0 - hexml ==0.3.4 + - hexml-lens ==0.2.2 - hexpat ==0.20.13 - - hex-text ==0.1.0.6 + - hex-text ==0.1.0.7 - hformat ==0.3.3.1 - hfsevents ==0.1.6 - hgeometry ==0.14 - hgeometry-combinatorial ==0.14 - - hid ==0.2.2 - hidapi ==0.1.8 + - hierarchical-clustering ==0.4.7 - hi-file-parser ==0.1.3.0 - - higher-leveldb ==0.6.0.0 - highlighting-kate ==0.6.4 - hindent ==5.3.4 - hinfo ==0.0.3.0 - hinotify ==0.4.1 - hint ==0.9.0.6 + - hip ==1.5.6.0 - histogram-fill ==0.9.1.0 - hjsmin ==0.2.0.4 - hkd-default ==1.1.0.0 - - hkgr ==0.3 - - hledger ==1.25 - - hledger-iadd ==1.3.17 - - hledger-interest ==1.6.3 - - hledger-lib ==1.25 - - hledger-stockquotes ==0.1.2.0 - - hledger-ui ==1.25 - - hledger-web ==1.25 + - hkgr ==0.4.2 + - hledger ==1.27.1 + - hledger-interest ==1.6.4 + - hledger-lib ==1.27.1 + - hledger-stockquotes ==0.1.2.1 + - hledger-ui ==1.27.1 + - hledger-web ==1.27.1 - hlibcpuid ==0.2.0 - hlibgit2 ==0.18.0.16 - hlibsass ==0.1.10.1 - - hlint ==3.3.6 + - hlint ==3.4.1 - hmatrix ==0.20.2 - hmatrix-gsl ==0.19.0.1 - hmatrix-gsl-stats ==0.4.1.8 - hmatrix-morpheus ==0.1.1.2 - hmatrix-repa ==0.1.2.2 + - hmatrix-special ==0.19.0.0 - hmatrix-vector-sized ==0.1.3.0 - - hmm-lapack ==0.5 - HMock ==0.5.1.0 - hnock ==0.4.0 - - hoauth2 ==2.3.0 - - hocilib ==0.2.0 + - hoauth2 ==2.6.0 - hoogle ==5.0.18.3 - hopenssl ==2.2.4 - hopfli ==0.2.2.1 @@ -1091,13 +1131,13 @@ default-package-overrides: - hourglass ==0.2.12 - hourglass-orphans ==0.1.0.0 - hp2pretty ==0.10 - - hpack ==0.34.7 - - hpack-dhall ==0.5.4 + - hpack ==0.35.0 + - hpack-dhall ==0.5.7 - hpc-codecov ==0.3.0.0 + - hpc-lcov ==1.1.0 - HPDF ==1.6.0 - hpp ==0.6.5 - hpqtypes ==1.9.4.0 - - hprotoc ==2.4.17 - hreader ==1.1.0 - hreader-lens ==0.1.3.0 - hruby ==0.5.0.0 @@ -1106,38 +1146,38 @@ default-package-overrides: - hsc2hs ==0.68.8 - hscolour ==1.24.4 - hsdns ==1.8 + - hse-cpp ==0.2 - hsemail ==2.2.1 - hset ==2.2.0 - - hsexif ==0.6.1.9 - hs-GeoIP ==0.3 - hsignal ==0.2.7.5 - hsini ==0.5.1.2 - hsinstall ==2.7 - HSlippyMap ==3.0.1 - hslogger ==1.3.1.0 - - hslua ==2.1.0 - - hslua-aeson ==2.1.0 - - hslua-classes ==2.1.0 - - hslua-core ==2.1.0 - - hslua-marshalling ==2.1.0 + - hslua ==2.2.1 + - hslua-aeson ==2.2.1 + - hslua-classes ==2.2.0 + - hslua-core ==2.2.1 + - hslua-marshalling ==2.2.1 - hslua-module-doclayout ==1.0.4 - hslua-module-path ==1.0.3 - hslua-module-system ==1.0.2 - hslua-module-text ==1.0.2 - hslua-module-version ==1.0.3 - - hslua-objectorientation ==2.1.0 - - hslua-packaging ==2.1.0 + - hslua-objectorientation ==2.2.1 + - hslua-packaging ==2.2.1 - hsndfile ==0.8.0 - hsndfile-vector ==0.5.2 - HsOpenSSL ==0.11.7.2 - HsOpenSSL-x509-system ==0.1.0.4 - hsp ==0.10.0 - - hspec ==2.8.5 + - hspec ==2.9.7 - hspec-attoparsec ==0.1.0.2 - hspec-checkers ==0.1.0.2 - - hspec-contrib ==0.5.1 - - hspec-core ==2.8.5 - - hspec-discover ==2.8.5 + - hspec-contrib ==0.5.1.1 + - hspec-core ==2.9.7 + - hspec-discover ==2.9.7 - hspec-expectations ==0.8.2 - hspec-expectations-json ==1.0.0.7 - hspec-expectations-lifted ==0.10.0 @@ -1145,25 +1185,26 @@ default-package-overrides: - hspec-golden ==0.2.0.0 - hspec-golden-aeson ==0.9.0.0 - hspec-hedgehog ==0.0.1.2 - - hspec-junit-formatter ==1.0.3.0 + - hspec-junit-formatter ==1.1.0.2 - hspec-leancheck ==0.0.6 - hspec-megaparsec ==2.2.0 - - hspec-meta ==2.7.8 + - hspec-meta ==2.9.3 - hspec-need-env ==0.1.0.10 - hspec-parsec ==0 - hspec-smallcheck ==0.5.2 - hspec-tmp-proc ==0.5.1.2 - hspec-wai ==0.11.1 + - hspec-wai-json ==0.11.0 - hs-php-session ==0.0.9.3 - hsshellscript ==3.5.0 - - hs-tags ==0.1.5.3 - hstatistics ==0.3.1 - HStringTemplate ==0.8.8 - HSvm ==0.1.1.3.25 + - hsx2hs ==0.14.1.10 + - hsx-jmacro ==7.3.8.2 - HsYAML ==0.2.1.1 - HsYAML-aeson ==0.2.0.1 - hsyslog ==5.0.2 - - hsyslog-udp ==0.2.5 - htaglib ==1.2.0 - HTF ==0.15.0.0 - html ==1.0.1.2 @@ -1171,13 +1212,16 @@ default-package-overrides: - html-email-validate ==0.2.0.0 - html-entities ==1.1.4.6 - html-entity-map ==0.1.0.0 + - htoml-megaparsec ==2.1.0.4 + - htoml-parse ==0.1.0.1 - http2 ==3.0.3 - - HTTP ==4000.3.16 + - HTTP ==4000.4.1 - http-api-data ==0.4.3 - http-api-data-qq ==0.1.0.0 - http-client ==0.7.13.1 - http-client-openssl ==0.3.3 - http-client-overrides ==0.1.1.0 + - http-client-restricted ==0.0.5 - http-client-tls ==0.3.6.1 - http-common ==0.8.3.4 - http-conduit ==2.3.8 @@ -1198,7 +1242,7 @@ default-package-overrides: - hunit-dejafu ==2.0.0.6 - hvect ==0.4.0.1 - hvega ==0.12.0.3 - - hw-balancedparens ==0.4.1.2 + - hw-balancedparens ==0.4.1.3 - hw-bits ==0.7.2.2 - hw-conduit ==0.2.1.1 - hw-conduit-merges ==0.2.1.0 @@ -1210,8 +1254,10 @@ default-package-overrides: - hw-fingertree ==0.1.2.1 - hw-fingertree-strict ==0.1.2.1 - hw-hedgehog ==0.1.1.1 + - hw-hspec-hedgehog ==0.1.1.1 - hw-int ==0.0.2.0 - hw-ip ==2.4.2.1 + - hw-json ==1.3.2.3 - hw-json-simd ==0.1.1.1 - hw-json-simple-cursor ==0.1.1.1 - hw-json-standard-cursor ==0.2.3.2 @@ -1239,14 +1285,12 @@ default-package-overrides: - hxt-tagsoup ==9.1.4 - hxt-unicode ==9.0.2.4 - hybrid-vectors ==0.2.3 - - hyper ==0.2.1.1 - hyperloglog ==0.4.6 - hyphenation ==0.8.2 - - iconv ==0.4.1.3 - identicon ==0.2.2 - ieee754 ==0.8.0 - if ==0.1.0.0 - - iff ==0.0.6 + - IfElse ==0.85 - ihaskell ==0.10.3.0 - ihaskell-hvega ==0.5.0.3 - ihs ==0.1.0.3 @@ -1257,6 +1301,7 @@ default-package-overrides: - immortal-queue ==0.1.0.1 - inbox ==0.2.0 - include-file ==0.1.0.4 + - incremental ==0.3.1 - incremental-parser ==0.5.0.4 - indents ==0.5.0.1 - indexed ==0.1.3 @@ -1277,7 +1322,6 @@ default-package-overrides: - insert-ordered-containers ==0.2.5.1 - inspection-testing ==0.4.6.1 - instance-control ==0.1.2.0 - - int-cast ==0.2.0.0 - integer-logarithms ==1.0.3.1 - integer-roots ==1.0.2.0 - integration ==0.2.1 @@ -1285,13 +1329,12 @@ default-package-overrides: - interpolate ==0.2.1 - interpolatedstring-perl6 ==1.0.2 - interpolation ==0.1.1.2 + - Interpolation ==0.3.0 - IntervalMap ==0.6.1.2 - intervals ==0.9.2 - - intro ==0.9.0.0 - intset-imperative ==0.1.0.0 - - invariant ==0.5.6 + - invariant ==0.6 - invert ==1.0.0.2 - - invertible ==0.2.0.7 - invertible-grammar ==0.1.3.3 - io-machine ==0.2.0.0 - io-manager ==0.1.0.3 @@ -1299,14 +1342,14 @@ default-package-overrides: - io-region ==0.1.1 - io-storage ==0.3 - io-streams ==1.5.2.2 + - io-streams-haproxy ==1.0.1.0 + - ip ==1.7.6 - ip6addr ==1.0.3 - iproute ==1.7.12 - IPv6Addr ==2.0.5 - ipynb ==0.2 - ipython-kernel ==0.10.3.0 - irc ==0.6.1.0 - - irc-client ==1.1.2.2 - - irc-conduit ==0.3.0.5 - irc-ctcp ==0.1.3.1 - isbn ==1.1.0.4 - islink ==0.1.0.0 @@ -1314,24 +1357,32 @@ default-package-overrides: - iso639 ==0.1.0.3 - iso8601-time ==0.1.5 - isocline ==1.0.9 + - isomorphism-class ==0.1.0.7 - iterable ==3.0 + - ixset ==1.1.1.2 + - ixset-typed ==0.5.1.0 + - ixset-typed-binary-instance ==0.1.0.2 + - ixset-typed-conversions ==0.1.2.0 + - ixset-typed-hashable-instance ==0.1.0.2 - ix-shapable ==0.1.0 - - jack ==0.7.2 - jalaali ==1.0.0.0 - java-adt ==0.2018.11.4 - jira-wiki-markup ==1.4.0 + - jl ==0.1.0 + - jmacro ==0.6.17.1 - jose ==0.9 + - jose-jwt ==0.9.4 - js-chart ==2.9.4.1 - js-dgtable ==0.5.2 - js-flot ==0.8.3 - js-jquery ==3.3.1 - json ==0.10 - json-feed ==2.0.0.4 - - jsonifier ==0.2.1.1 - - jsonpath ==0.2.1.0 + - jsonifier ==0.2.1.2 + - jsonpath ==0.3.0.0 + - json-rpc ==1.0.4 - json-stream ==0.4.4.2 - JuicyPixels ==3.3.7 - - JuicyPixels-blurhash ==0.1.0.3 - JuicyPixels-extra ==0.5.2 - JuicyPixels-scale-dct ==0.1.2 - junit-xml ==0.1.0.2 @@ -1339,30 +1390,34 @@ default-package-overrides: - jwt ==0.11.0 - kan-extensions ==5.2.5 - kanji ==3.5.0 + - kansas-comet ==0.4.1 - katip ==0.8.7.2 - katip-logstash ==0.1.0.2 - - katip-wai ==0.1.2.0 + - katip-wai ==0.1.2.1 - kazura-queue ==0.1.0.4 + - kdt ==0.2.5 - keep-alive ==0.2.1.0 - keycode ==0.2.2 - keys ==3.12.3 - - ki ==0.2.0.1 + - ki ==1.0.0.1 - kind-apply ==0.3.2.1 - kind-generics ==0.4.1.4 - kind-generics-th ==0.2.2.3 + - ki-unlifted ==1.0.0.1 - kleene ==0.1 - kmeans ==0.1.3 + - knob ==0.2.1 - koji ==0.0.2 - - krank ==0.2.3 - l10n ==0.1.0.1 - labels ==0.3.3 - lackey ==2.0.0.3 - LambdaHack ==0.11.0.0 - lame ==0.2.0 + - language-avro ==0.1.4.0 - language-bash ==0.9.2 - language-c ==0.9.1 - language-c-quote ==0.13 - - language-docker ==10.4.3 + - language-docker ==12.0.0 - language-dot ==0.1.1 - language-glsl ==0.3.0 - language-java ==0.2.9 @@ -1370,12 +1425,10 @@ default-package-overrides: - language-protobuf ==1.0.1 - language-python ==0.5.8 - language-thrift ==0.12.0.1 - - lapack ==0.5 - lapack-carray ==0.0.3 - lapack-comfort-array ==0.0.1 - lapack-ffi ==0.0.3 - lapack-ffi-tools ==0.1.3 - - lapack-hmatrix ==0.0.0.1 - largeword ==1.2.5 - latex ==0.1.0.4 - lattices ==2.0.3 @@ -1387,75 +1440,75 @@ default-package-overrides: - leancheck ==0.9.12 - leancheck-instances ==0.0.5 - leapseconds-announced ==2017.1.0.1 - - learn-physics ==0.6.5 - - lens ==5.0.1 + - leb128-cereal ==1.2 + - lens ==5.1.1 - lens-action ==0.2.6 - - lens-aeson ==1.1.3 + - lens-aeson ==1.2.2 - lens-csv ==0.1.1.0 - lens-family ==2.1.2 - lens-family-core ==2.1.2 - lens-family-th ==0.5.2.1 - lens-misc ==0.0.2.0 - - lens-process ==0.4.0.0 - lens-properties ==4.11.1 - lens-regex ==0.1.3 - lens-regex-pcre ==1.1.0.0 - - lentil ==1.5.4.0 + - lentil ==1.5.4.2 - LetsBeRational ==1.0.0.0 - leveldb-haskell ==0.6.5 - lexer-applicative ==2.1.0.2 - libBF ==0.6.5.1 - - libffi ==0.1 + - libffi ==0.2.1 - libgit ==0.3.1 - libgraph ==1.14 - libmpd ==0.10.0.0 - liboath-hs ==0.0.1.2 - libyaml ==0.1.2 - - LibZip ==1.0.1 - lifted-async ==0.10.2.3 - lifted-base ==0.2.3.12 - lift-generics ==0.2.1 - - lift-type ==0.1.0.1 + - lift-type ==0.1.1.1 - line ==4.0.1 - linear ==1.21.10 - - linear-base ==0.1.0 - - linear-circuit ==0.1.0.4 - - linebreak ==1.1.0.1 + - linear-base ==0.3.0 + - linear-generics ==0.2 + - linebreak ==1.1.0.2 - linenoise ==0.3.2 - linux-capabilities ==0.1.1.0 - linux-file-extents ==0.2.0.0 - linux-namespaces ==0.1.3.0 - List ==0.6.2 - - ListLike ==4.7.7 + - ListLike ==4.7.8 - list-predicate ==0.1.0.1 - listsafe ==0.1.0.1 - - list-singleton ==2.0.0.2 - list-t ==1.0.5.3 - list-transformer ==1.0.9 - ListTree ==0.2.3 - ListZipper ==1.2.0.2 - literatex ==0.2.0.2 - - little-rio ==0.2.2 - - llvm-hs-pure ==9.0.0 + - little-logger ==1.0.1 + - little-rio ==1.0.1 - lmdb ==0.2.5 - load-env ==0.2.1.0 - - loc ==0.1.3.16 + - loc ==0.1.4.0 - locators ==0.3.0.3 - loch-th ==0.2.2 - lockfree-queue ==0.2.4 - log-domain ==0.13.2 - logfloat ==0.13.4 + - logger-thread ==0.1.0.2 - logging ==3.0.5 + - logging-effect ==1.3.13 - logging-facade ==0.3.1 - logging-facade-syslog ==1 - - logict ==0.7.1.0 + - logict ==0.8.0.0 - logstash ==0.1.0.3 - loop ==0.3.0 - lpeg ==1.0.3 - lrucache ==1.2.0.1 - lrucaching ==0.3.3 - - lua ==2.1.0 + - lua ==2.2.1 - lua-arbitrary ==1.0.1 + - lucid2 ==0.0.20221012 - lucid ==2.11.1 - lucid-cdn ==0.2.2.0 - lucid-extras ==0.2.2 @@ -1468,14 +1521,16 @@ default-package-overrides: - lzma-conduit ==1.2.3 - machines ==0.7.3 - magic ==1.1 - - magico ==0.0.2.3 - mainland-pretty ==0.7.1 - main-tester ==0.2.0.1 - managed ==1.0.9 - mandrill ==0.5.6.0 + - map-syntax ==0.3 - markdown ==0.1.17.5 - markdown-unlit ==0.5.1 - markov-chain ==0.0.3.4 + - markov-chain-usage-model ==0.0.0 + - mason ==0.2.5 - massiv ==1.0.2.0 - massiv-io ==1.0.0.1 - massiv-persist ==1.0.0.3 @@ -1491,20 +1546,23 @@ default-package-overrides: - matrix-market-attoparsec ==0.1.1.3 - matrix-static ==0.3 - maximal-cliques ==0.1.1 - - mbox ==0.3.4 - - mbox-utility ==0.0.3.1 - - mbtiles ==0.6.0.0 - - mcmc ==0.6.2.2 + - mcmc ==0.8.0.1 - mcmc-types ==1.0.3 - median-stream ==0.7.0.0 - med-module ==0.1.2.2 - megaparsec ==9.2.2 - megaparsec-tests ==9.2.2 - mega-sdist ==0.4.2.1 - - memory ==0.16.0 + - membership ==0.0.1 + - memcache ==0.3.0.1 + - memfd ==1.0.1.0 + - memory ==0.17.0 - MemoTrie ==0.6.10 - - mercury-api ==0.1.0.2 - - mergeless ==0.3.0.0 + - mergeful ==0.3.0.0 + - mergeful-persistent ==0.1.0.0 + - mergeless ==0.4.0.0 + - mergeless-persistent ==0.1.0.0 + - merkle-tree ==0.1.1 - mersenne-random ==1.0.0.1 - mersenne-random-pure64 ==0.2.2.0 - messagepack ==0.5.5 @@ -1512,7 +1570,7 @@ default-package-overrides: - mfsolve ==0.3.2.1 - microaeson ==0.1.0.1 - microlens ==0.4.12.0 - - microlens-aeson ==2.4.1 + - microlens-aeson ==2.5.0 - microlens-contra ==0.1.0.2 - microlens-ghc ==0.4.13.2 - microlens-mtl ==0.2.0.2 @@ -1523,17 +1581,19 @@ default-package-overrides: - microstache ==1.0.2.2 - midair ==0.2.0.1 - midi ==0.2.2.3 - - midi-alsa ==0.2.1 + - midi-music-box ==0.0.1.2 - mighty-metropolis ==2.0.0 - mime-mail ==0.5.1 - mime-mail-ses ==0.4.3 - - mime-types ==0.1.1.0 + - mime-types ==0.1.0.9 - minimal-configuration ==0.1.4 - minimorph ==0.3.0.1 - minio-hs ==1.6.0 + - minisat-solver ==0.1 - miniutter ==0.5.1.2 - min-max-pqueue ==0.1.0.2 - mintty ==0.1.4 + - misfortune ==0.1.2.1 - missing-foreign ==0.1.1 - MissingH ==1.5.0.1 - mixed-types-num ==0.5.11 @@ -1541,7 +1601,7 @@ default-package-overrides: - mmark ==0.0.7.6 - mmark-cli ==0.0.5.1 - mmark-ext ==0.2.1.5 - - mmorph ==1.1.5 + - mmorph ==1.2.0 - mnist-idx ==0.1.3.1 - mnist-idx-conduit ==0.4.0.0 - mockery ==0.3.5 @@ -1552,21 +1612,24 @@ default-package-overrides: - modular ==0.1.0.8 - monad-chronicle ==1.0.1 - monad-control ==1.0.3.1 - - monad-control-aligned ==0.0.1.1 - monad-coroutine ==0.9.2 - monad-extras ==0.6.0 - monadic-arrays ==0.2.2 - monad-journal ==0.8.1 - monadlist ==0.0.2 + - monadloc ==0.7.1 - monad-logger ==0.3.37 + - monad-logger-aeson ==0.4.0.2 - monad-logger-json ==0.1.0.0 - monad-logger-logstash ==0.2.0.2 - monad-logger-prefix ==0.1.12 - monad-loops ==0.4.3 - monad-memo ==0.5.4 + - monad-metrics ==0.2.2.0 - monadoid ==0.0.3 + - monadology ==0.1 - monad-par ==0.3.5 - - monad-parallel ==0.7.2.5 + - monad-parallel ==0.8 - monad-par-extras ==0.3.3 - monad-peel ==0.2.1.2 - monad-primitive ==0.1 @@ -1574,6 +1637,7 @@ default-package-overrides: - MonadPrompt ==1.0.0.5 - MonadRandom ==0.5.3 - monad-resumption ==0.1.4.0 + - monad-schedule ==0.1.2.0 - monad-skeleton ==0.2 - monad-st ==0.2.4.1 - monads-tf ==0.1.0.3 @@ -1583,28 +1647,37 @@ default-package-overrides: - monoid-extras ==0.6.1 - monoid-subclasses ==1.1.3 - monoid-transformer ==0.0.4 - - monomer ==1.3.0.0 + - monomer ==1.5.0.0 - mono-traversable ==1.0.15.3 - mono-traversable-instances ==0.1.1.0 - mono-traversable-keys ==0.2.0 - more-containers ==0.2.2.2 - - morpheus-graphql-tests ==0.18.0 + - morpheus-graphql ==0.27.0 + - morpheus-graphql-app ==0.27.0 + - morpheus-graphql-client ==0.27.0 + - morpheus-graphql-code-gen ==0.27.0 + - morpheus-graphql-code-gen-utils ==0.27.0 + - morpheus-graphql-core ==0.27.0 + - morpheus-graphql-server ==0.27.0 + - morpheus-graphql-subscriptions ==0.27.0 + - morpheus-graphql-tests ==0.27.0 - moss ==0.2.0.1 - mountpoints ==1.0.2 - mpi-hs ==0.7.2.0 - mpi-hs-binary ==0.1.1.0 - mpi-hs-cereal ==0.1.0.0 + - mstate ==0.2.8 - mtl-compat ==0.2.2 - mtl-prelude ==2.0.3.1 - multiarg ==0.30.0.10 - multi-containers ==0.2 - multimap ==1.2.1 - - multipart ==0.2.1 - multiset ==0.3.4.3 - multistate ==0.8.0.4 - murmur3 ==1.0.5 - murmur-hash ==0.1.0.10 - MusicBrainz ==0.4.1 + - mustache ==2.4.1 - mutable-containers ==0.3.4.1 - mwc-probability ==2.3.1 - mwc-random ==0.15.0.2 @@ -1632,9 +1705,10 @@ default-package-overrides: - netlib-carray ==0.1 - netlib-comfort-array ==0.0.0.2 - netlib-ffi ==0.1.1 + - net-mqtt ==0.8.2.4 + - net-mqtt-lens ==0.1.1.0 - netpbm ==1.0.4 - netrc ==0.2.0.0 - - nettle ==0.3.0 - netwire ==5.0.3 - netwire-input ==0.0.7 - netwire-input-glfw ==0.0.11 @@ -1646,15 +1720,14 @@ default-package-overrides: - network-ip ==0.3.0.3 - network-messagepack-rpc ==0.1.2.0 - network-messagepack-rpc-websocket ==0.1.1.1 + - network-multicast ==0.3.2 + - Network-NineP ==0.4.7.2 - network-run ==0.2.4 - network-simple ==0.4.5 - network-simple-tls ==0.4 - - network-transport ==0.5.4 - - network-transport-composed ==0.2.1 - - network-transport-tcp ==0.8.1 - - network-transport-tests ==0.3.1 + - network-transport ==0.5.6 - network-uri ==2.6.4.1 - - network-wait ==0.1.2.0 + - network-wait ==0.2.0.0 - newtype ==0.2.2.0 - newtype-generics ==0.6.2 - nfc ==0.1.1 @@ -1664,7 +1737,7 @@ default-package-overrides: - nix-paths ==1.0.1 - NoHoed ==0.1.1 - nonce ==1.0.7 - - nondeterminism ==1.4 + - nondeterminism ==1.5 - non-empty ==0.3.3 - nonempty-containers ==0.3.4.4 - nonemptymap ==0.0.6.0 @@ -1672,8 +1745,8 @@ default-package-overrides: - nonempty-vector ==0.2.1.0 - nonempty-zipper ==1.0.0.4 - non-negative ==0.1.2 + - normaldistribution ==1.1.0.3 - normalization-insensitive ==2.0.2 - - not-gloss ==0.7.7.0 - no-value ==1.0.0.0 - nowdoc ==0.1.1.0 - nqe ==0.6.4 @@ -1689,21 +1762,24 @@ default-package-overrides: - NumInstances ==1.4 - numtype-dk ==0.5.0.3 - nuxeo ==0.3.2 - - nvim-hs ==2.2.0.3 + - nvim-hs ==2.3.1.0 + - nvim-hs-contrib ==2.0.0.1 + - nvim-hs-ghcid ==2.0.0.0 + - oauthenticated ==0.3.0.0 - ObjectName ==1.1.0.2 + - oblivious-transfer ==0.1.0 - ochintin-daicho ==0.3.4.2 - - o-clock ==1.2.1.1 - - oeis ==0.3.10 + - o-clock ==1.3.0 - ofx ==0.4.4.0 - old-locale ==1.0.0.7 - old-time ==1.1.0.3 - once ==0.4 - - one-liner ==2.0 + - one-liner ==2.1 - one-liner-instances ==0.1.3.0 - OneTuple ==0.3.1 - Only ==0.1 - oo-prototypes ==0.1.0.0 - - opaleye ==0.9.3.2 + - opaleye ==0.9.6.1 - OpenAL ==1.7.0.5 - openapi3 ==3.2.2 - open-browser ==0.2.1.0 @@ -1713,10 +1789,11 @@ default-package-overrides: - openpgp-asciiarmor ==0.1.2 - opensource ==0.1.1.0 - openssl-streams ==1.2.3.0 - - opentelemetry ==0.7.0 - - opentelemetry-extra ==0.7.0 - - opentelemetry-lightstep ==0.7.0 - - opentelemetry-wai ==0.7.0 + - opentelemetry ==0.8.0 + - opentelemetry-extra ==0.8.0 + - opentelemetry-lightstep ==0.8.0 + - opentelemetry-wai ==0.8.0 + - open-witness ==0.6 - operational ==0.2.4.1 - operational-class ==0.3.0.0 - opml-conduit ==0.9.0.0 @@ -1728,14 +1805,14 @@ default-package-overrides: - optima ==0.4.0.3 - optional-args ==1.0.2 - options ==1.2.1.1 - - optparse-applicative ==0.16.1.0 + - optparse-applicative ==0.17.0.0 - optparse-enum ==1.0.0.0 - optparse-generic ==1.4.8 - optparse-simple ==0.1.1.4 - optparse-text ==0.1.1.0 - OrderedBits ==0.0.2.0 - ordered-containers ==0.2.3 - - ormolu ==0.3.1.0 + - ormolu ==0.5.0.1 - overhang ==1.0.0 - packcheck ==0.6.0 - pager ==0.1.1.0 @@ -1743,13 +1820,14 @@ default-package-overrides: - pagure ==0.1.1 - pagure-cli ==0.2.1 - palette ==0.3.0.2 - - pandoc ==2.17.1.1 + - pandoc ==2.19.2 - pandoc-csv2table ==1.0.9 - pandoc-dhall-decoder ==0.1.0.1 - pandoc-lua-marshal ==0.1.7 - - pandoc-plot ==1.4.1 + - pandoc-plot ==1.5.5 - pandoc-throw ==0.1.0.0 - pandoc-types ==1.22.2.1 + - pango ==0.13.8.2 - pantry ==0.5.7 - parallel ==3.2.2.0 - parallel-io ==0.3.5 @@ -1765,7 +1843,7 @@ default-package-overrides: - partial-handler ==1.0.3 - partial-isomorphisms ==0.2.3.0 - partial-order ==0.2.0.0 - - partial-semigroup ==0.5.1.14 + - partial-semigroup ==0.6.0.0 - password ==3.0.2.0 - password-instances ==3.0.0.0 - password-types ==1.0.0.0 @@ -1779,33 +1857,34 @@ default-package-overrides: - path-io ==1.7.0 - path-like ==0.2.0.2 - path-pieces ==0.2.1 + - path-text-utf8 ==0.0.1.10 - pathtype ==0.8.1.1 - path-utils ==0.1.1.0 - pathwalk ==0.3.1.2 - pattern-arrows ==0.0.2 - pava ==0.1.1.4 + - pcf-font ==0.2.2.1 - pcg-random ==0.1.3.7 - pcre2 ==2.1.1.1 - pcre-heavy ==1.0.0.3 - pcre-light ==0.4.1.0 - pcre-utils ==0.1.8.2 - pdc ==0.1.1 - - pdfinfo ==1.5.4 - pdf-toolbox-content ==0.1.1 - pdf-toolbox-core ==0.1.1 - pdf-toolbox-document ==0.1.2 - peano ==0.1.0.1 + - pedersen-commitment ==0.2.0 - pem ==0.2.4 - percent-format ==0.0.2 - peregrin ==0.3.3 - - perf ==0.9.0 - - perfect-hash-generator ==0.2.0.6 + - perfect-hash-generator ==1.0.0 - persist ==0.1.1.5 - persistent ==2.13.3.5 - persistent-discover ==0.1.0.6 - persistent-documentation ==0.1.0.4 + - persistent-iproute ==0.2.5 - persistent-mongoDB ==2.13.0.1 - - persistent-mtl ==0.4.0.0 - persistent-mysql ==2.13.1.3 - persistent-pagination ==0.1.1.2 - persistent-postgresql ==2.13.5.0 @@ -1815,13 +1894,14 @@ default-package-overrides: - persistent-sqlite ==2.13.1.0 - persistent-template ==2.12.0.0 - persistent-test ==2.13.1.2 + - persistent-typed-db ==0.1.0.7 - pg-harness-client ==0.6.0 - pgp-wordlist ==0.1.0.3 - pg-transact ==0.3.2.0 - phantom-state ==0.2.1.2 - phatsort ==0.5.0.1 - picosat ==0.1.6 - - pid1 ==0.1.3.0 + - pid1 ==0.1.3.1 - pinch ==0.4.2.0 - pipes ==4.3.16 - pipes-attoparsec ==0.5.1.5 @@ -1832,18 +1912,20 @@ default-package-overrides: - pipes-fastx ==0.3.0.0 - pipes-fluid ==0.6.0.1 - pipes-group ==1.0.12 - - pipes-http ==1.0.6 - pipes-mongodb ==0.1.0.0 - pipes-ordered-zip ==1.2.1 - pipes-parse ==3.0.9 - pipes-random ==1.0.0.5 - pipes-safe ==2.3.4 + - pipes-text ==1.0.1 - pipes-wai ==3.2.0 - - pkgtreediff ==0.5.0 + - pkgtreediff ==0.6.0 - place-cursor-at ==1.0.1 - placeholders ==0.1 - plaid ==0.1.0.4 - - plotlyhs ==0.2.1 + - plot ==0.2.3.11 + - plotlyhs ==0.2.3 + - Plural ==0.0.2 - pointed ==5.0.4 - pointedlist ==0.6.1 - pointless-fun ==1.1.0.8 @@ -1852,36 +1934,33 @@ default-package-overrides: - poly-arity ==0.1.0 - polynomials-bernstein ==1.1.2 - polyparse ==1.13 - - polysemy ==1.6.0.0 + - polysemy ==1.7.1.0 - polysemy-extra ==0.2.1.0 - polysemy-fs ==0.1.0.0 - - polysemy-fskvstore ==0.1.1.0 - polysemy-kvstore ==0.1.3.0 - polysemy-methodology ==0.2.2.0 - - polysemy-path ==0.2.1.0 - - polysemy-plugin ==0.4.1.1 + - polysemy-plugin ==0.4.3.1 - polysemy-several ==0.1.1.0 - - polysemy-socket ==0.0.2.0 - - polysemy-uncontrolled ==0.1.1.1 - - polysemy-video ==0.2.0.1 - - polysemy-vinyl ==0.1.5.0 - polysemy-webserver ==0.2.1.1 + - polysemy-zoo ==0.8.1.0 + - pontarius-xmpp ==0.5.6.5 - pooled-io ==0.0.2.2 + - portable-lines ==0.1 - port-utils ==0.2.1.0 - posix-paths ==0.3.0.0 + - posix-pty ==0.2.2 - possibly ==1.0.0.0 - postgres-options ==0.2.0.0 - - postgresql-binary ==0.12.5 + - postgresql-binary ==0.13.1 - postgresql-libpq ==0.9.4.3 - postgresql-libpq-notify ==0.2.0.0 - postgresql-migration ==0.2.1.6 - - postgresql-orm ==0.5.1 - - postgresql-query ==3.9.0 + - postgresql-query ==3.10.0 - postgresql-schema ==0.1.14 - - postgresql-simple ==0.6.5 + - postgresql-simple ==0.6.4 - postgresql-simple-url ==0.2.1.0 - postgresql-syntax ==0.4.1 - - postgresql-typed ==0.6.2.1 + - postgresql-typed ==0.6.2.2 - post-mess-age ==0.2.1.0 - pptable ==0.3.0.0 - pqueue ==1.4.3.0 @@ -1894,20 +1973,20 @@ default-package-overrides: - pretty-hex ==1.1 - prettyprinter ==1.7.1 - prettyprinter-ansi-terminal ==1.1.3 + - prettyprinter-combinators ==0.1.1 - prettyprinter-compat-annotated-wl-pprint ==1.1 - prettyprinter-compat-ansi-wl-pprint ==1.0.2 - prettyprinter-compat-wl-pprint ==1.0.1 - prettyprinter-convert-ansi-wl-pprint ==1.1.2 - pretty-relative-time ==0.3.0.0 - pretty-show ==1.10 - - pretty-simple ==4.0.0.0 + - pretty-simple ==4.1.2.0 - pretty-sop ==0.2.0.3 - pretty-terminal ==0.1.0.0 - pretty-types ==0.4.0.0 - primes ==0.2.1.0 - primitive ==0.7.3.0 - primitive-addr ==0.1.0.2 - - PrimitiveArray ==0.10.1.1 - primitive-extras ==0.10.1.5 - primitive-offset ==0.2.0.0 - primitive-unaligned ==0.1.1.2 @@ -1918,6 +1997,7 @@ default-package-overrides: - process-extras ==0.7.4 - product-profunctors ==0.11.0.3 - profiterole ==0.1 + - profiteur ==0.4.6.1 - profunctors ==5.6.2 - projectroot ==0.2.0.1 - project-template ==0.2.1.0 @@ -1930,8 +2010,6 @@ default-package-overrides: - prospect ==0.1.0.0 - protobuf ==0.2.1.3 - protobuf-simple ==0.1.1.1 - - protocol-buffers ==2.4.17 - - protocol-buffers-descriptor ==2.4.17 - protocol-radius ==0.0.1.1 - protocol-radius-test ==0.1.0.1 - proto-lens ==0.7.1.2 @@ -1946,21 +2024,21 @@ default-package-overrides: - psql-helpers ==0.1.0.0 - psqueues ==0.2.7.3 - pthread ==0.2.1 + - ptr ==0.16.8.4 - ptr-poker ==0.1.2.8 - pulse-simple ==0.1.14 - pureMD5 ==2.1.4 - purescript-bridge ==0.14.0.0 - pusher-http-haskell ==2.1.0.12 - pvar ==1.0.0.0 - - PyF ==0.10.2.0 + - pwstore-fast ==2.4.4 + - PyF ==0.11.1.0 - qchas ==1.1.0.1 - qm-interpolated-string ==0.3.1.0 - qrcode-core ==0.9.5 - qrcode-juicypixels ==0.8.3 - quadratic-irrational ==0.1.1 - QuasiText ==0.1.2.6 - - queue-sheet ==0.7.0.2 - - quickbench ==1.0.1 - QuickCheck ==2.14.2 - quickcheck-arbitrary-adt ==0.3.1.0 - quickcheck-assertions ==0.3.0 @@ -1971,6 +2049,7 @@ default-package-overrides: - quickcheck-io ==0.2.0 - quickcheck-simple ==0.1.1.1 - quickcheck-special ==0.1.0.6 + - quickcheck-state-machine ==0.7.1 - quickcheck-text ==0.1.2.1 - quickcheck-transformer ==0.3.1.1 - quickcheck-unicode ==1.0.1.0 @@ -1988,20 +2067,21 @@ default-package-overrides: - random-bytestring ==0.1.4 - random-fu ==0.3.0.0 - random-shuffle ==0.0.4 - - random-source ==0.3.0.11 - random-tree ==0.6.0.5 - range ==0.3.0.2 + - ranged-list ==0.1.2.0 - Ranged-sets ==0.4.0 + - ranges ==0.2.4 - range-set-list ==0.1.3.1 - rank1dynamic ==0.4.1 - - rank2classes ==1.4.4 + - rank2classes ==1.4.6 - Rasterific ==0.7.5.4 - rasterific-svg ==0.3.3.2 - ratel ==2.0.0.4 - - rate-limit ==1.4.2 - ratel-wai ==2.0.0.1 + - ratio-int ==0.1.2 - rattle ==0.2 - - rattletrap ==11.2.4 + - rattletrap ==11.2.14 - Rattus ==0.5.0.1 - rawfilepath ==1.0.1 - rawstring-qm ==0.2.3.0 @@ -2009,30 +2089,30 @@ default-package-overrides: - rcu ==0.2.6 - rdtsc ==1.3.0.1 - re2 ==0.3 - - readable ==0.3.1 + - reactive-banana ==1.3.1.0 - read-editor ==0.1.0.2 - read-env-var ==1.0.0.0 - reanimate-svg ==0.13.0.1 - - rebase ==1.15.0.3 + - rebase ==1.16.1 + - rec-def ==0.2 - record-dot-preprocessor ==0.2.15 - record-hasfield ==1.0 - - records-sop ==0.1.1.0 - - record-wrangler ==0.1.1.0 - rec-smallarray ==0.1.0.0 - recursion-schemes ==5.2.2.2 + - recv ==0.0.0 - redact ==0.4.0.0 - reddit-scrape ==0.0.1 - - redis-io ==1.1.0 - redis-resp ==1.0.0 - reducers ==3.12.4 - refact ==0.3.0.2 - ref-fd ==0.5 - - refined ==0.6.3 + - refined ==0.8 - reflection ==2.1.6 - reform ==0.2.7.5 - reform-blaze ==0.2.4.4 - reform-hamlet ==0.0.5.3 - reform-happstack ==0.2.5.5 + - reform-hsp ==0.2.7.2 - RefSerialize ==0.4.0 - ref-tf ==0.5.0.1 - regex ==1.1.0.2 @@ -2046,30 +2126,35 @@ default-package-overrides: - regex-posix-clib ==2.7 - regex-tdfa ==1.3.2 - regex-with-pcre ==1.1.0.2 + - registry ==0.3.3.4 + - registry-aeson ==0.2.3.3 + - registry-hedgehog ==0.7.2.0 + - registry-hedgehog-aeson ==0.2.0.0 + - registry-options ==0.1.0.0 - reinterpret-cast ==0.1.0 - - rel8 ==1.3.1.0 + - rel8 ==1.4.0.0 + - relapse ==1.0.0.1 - reliable-io ==0.0.2 - - relude ==1.0.0.1 + - relude ==1.1.0.0 - renderable ==0.2.0.1 - reorder-expression ==0.1.0.0 - repa ==3.4.1.5 + - repa-algorithms ==3.4.1.5 - repa-io ==3.4.1.2 - replace-attoparsec ==1.4.5.0 - replace-megaparsec ==1.4.5.0 - repline ==0.4.2.0 - - req ==3.10.0 + - req ==3.13.0 - req-conduit ==1.0.1 - - require ==0.4.11 - - rerebase ==1.15.0.3 - - reroute ==0.6.0.0 - - rescue ==0.4.2.1 - - resistor-cube ==0.0.1.4 + - rerebase ==1.16.1 + - reroute ==0.7.0.0 - resolv ==0.1.2.0 - resource-pool ==0.2.3.2 - resourcet ==1.2.6 - result ==0.2.6.0 - retry ==0.9.3.0 - rev-state ==0.1.2 + - rex ==0.6.2 - rfc1751 ==0.1.3 - rfc5051 ==0.2 - rg ==1.4.0.0 @@ -2077,7 +2162,7 @@ default-package-overrides: - riak-protobuf ==0.25.0.0 - rio ==0.1.22.0 - rio-orphans ==0.1.2.0 - - rio-prettyprint ==0.1.2.0 + - rio-prettyprint ==0.1.3.0 - rng-utils ==0.3.1 - roc-id ==0.1.0.0 - rocksdb-haskell ==1.0.1 @@ -2085,20 +2170,26 @@ default-package-overrides: - rocksdb-query ==0.4.2 - roles ==0.2.1.0 - rollbar ==1.1.3 - - rope-utf16-splay ==0.3.2.0 - rosezipper ==0.2 - rot13 ==0.2.0.1 - rpmbuild-order ==0.4.10 - rpm-nvr ==0.1.2 - rp-tree ==0.7.1 + - rrb-vector ==0.1.1.0 - RSA ==2.4.1 + - rss ==3000.2.0.7 - rss-conduit ==0.6.0.1 + - run-haskell-module ==0.0.2 - runmemo ==1.0.0.1 + - run-st ==0.1.1.0 - rvar ==0.3.0.1 - s3-signer ==0.5.0.0 - safe ==0.3.19 - - safe-coloured-text ==0.1.0.0 - - safe-coloured-text-terminfo ==0.0.0.0 + - safe-coloured-text ==0.2.0.1 + - safe-coloured-text-gen ==0.0.0.1 + - safe-coloured-text-layout ==0.0.0.0 + - safe-coloured-text-layout-gen ==0.0.0.0 + - safe-coloured-text-terminfo ==0.1.0.0 - safecopy ==0.10.4.2 - safe-decimal ==0.2.1.0 - safe-exceptions ==0.1.7.3 @@ -2108,19 +2199,19 @@ default-package-overrides: - safe-json ==1.1.3.1 - safe-money ==0.9.1 - SafeSemaphore ==0.10.1 - - salak ==0.3.6 - - salak-yaml ==0.3.5.3 - - saltine ==0.1.1.1 - salve ==2.0.0.1 - sample-frame ==0.0.3 - sample-frame-np ==0.0.4.1 - sampling ==0.3.5 - - sandwich ==0.1.1.2 + - sandi ==0.5 + - sandwich ==0.1.2.0 + - sandwich-hedgehog ==0.1.1.0 - sandwich-quickcheck ==0.1.0.6 - sandwich-slack ==0.1.1.0 + - sandwich-webdriver ==0.1.2.0 - say ==0.1.0.1 - - sbp ==4.1.6 - - sbv ==8.17 + - sbp ==4.9.0 + - sbv ==9.0 - scalpel ==0.6.2.1 - scalpel-core ==0.6.2.1 - scanf ==0.1.0.0 @@ -2128,14 +2219,19 @@ default-package-overrides: - scheduler ==2.0.0.1 - SciBaseTypes ==0.1.1.0 - scientific ==0.3.7.0 - - scotty ==0.12 + - scientist ==0.0.0.0 + - scotty ==0.12.1 - scrypt ==0.5.0 - - sdl2 ==2.5.3.0 + - sdl2 ==2.5.4.0 + - sdl2-gfx ==0.3.0.0 + - sdl2-image ==2.1.0.0 + - sdl2-mixer ==1.2.0.0 - sdl2-ttf ==2.1.3 - search-algorithms ==0.3.2 - secp256k1-haskell ==0.6.1 - securemem ==0.1.10 - selda ==0.5.2.0 + - selda-json ==0.1.1.1 - selda-sqlite ==0.1.7.2 - selections ==0.3.0.0 - selective ==0.5 @@ -2144,11 +2240,12 @@ default-package-overrides: - semialign-optics ==1.2 - semigroupoid-extras ==5 - semigroupoids ==5.3.7 - - semigroups ==0.19.2 + - semigroups ==0.20 - semirings ==0.6 - semiring-simple ==1.0.0.1 - semver ==0.4.0.1 - sendfile ==0.7.11.4 + - sendgrid-v3 ==1.0.0.0 - seqalign ==0.2.0.4 - seqid ==0.6.2 - seqid-streams ==0.7.2 @@ -2164,6 +2261,7 @@ default-package-overrides: - servant-auth-swagger ==0.2.10.1 - servant-auth-wordpress ==1.0.0.2 - servant-blaze ==0.9.1 + - servant-cassava ==0.10.2 - servant-checked-exceptions ==2.2.0.1 - servant-checked-exceptions-core ==2.2.0.1 - servant-client ==0.19 @@ -2174,6 +2272,7 @@ default-package-overrides: - servant-exceptions ==0.2.1 - servant-exceptions-server ==0.2.1 - servant-foreign ==0.15.4 + - servant-http-streams ==0.18.4 - servant-JuicyPixels ==0.3.1.0 - servant-lucid ==0.9.0.5 - servant-machines ==0.15.1 @@ -2182,6 +2281,7 @@ default-package-overrides: - servant-multipart-client ==0.12.1 - servant-openapi3 ==2.0.1.5 - servant-pipes ==0.15.3 + - servant-rate-limit ==0.2.0.0 - servant-rawm ==1.0.0.0 - servant-ruby ==0.9.0.0 - servant-server ==0.19.2 @@ -2194,7 +2294,10 @@ default-package-overrides: - servant-websockets ==2.0.0 - servant-xml ==1.0.1.4 - serversession ==1.0.3 + - serversession-backend-persistent ==2.0.1 + - serversession-backend-redis ==1.0.5 - serversession-frontend-wai ==1.0.1 + - serversession-frontend-yesod ==1.0.1 - servius ==1.2.3.0 - ses-html ==0.4.0.0 - set-cover ==0.1.1 @@ -2208,7 +2311,9 @@ default-package-overrides: - shake ==0.19.7 - shake-language-c ==0.12.0 - shake-plus ==0.3.4.0 + - shake-plus-extended ==0.4.1.0 - shakespeare ==2.0.30 + - shakespeare-text ==1.1.0 - shared-memory ==0.2.0.0 - ShellCheck ==0.8.0 - shell-conduit ==5.0.0 @@ -2216,6 +2321,7 @@ default-package-overrides: - shellmet ==0.0.4.1 - shelltestrunner ==1.9 - shell-utility ==0.1 + - shellwords ==0.1.3.1 - shelly ==1.10.0 - shikensu ==0.4.1 - should-not-typecheck ==2.1.0 @@ -2224,10 +2330,9 @@ default-package-overrides: - signal ==0.1.0.4 - silently ==1.2.5.3 - simple-affine-space ==0.1.1 - - simple-cabal ==0.1.3 + - simple-cabal ==0.1.3.1 - simple-cmd ==0.2.7 - simple-cmd-args ==0.1.8 - - simple-log ==0.9.12 - simple-media-timestamp ==0.2.1.0 - simple-media-timestamp-attoparsec ==0.1.0.0 - simple-media-timestamp-formatting ==0.1.1.0 @@ -2237,34 +2342,28 @@ default-package-overrides: - since ==0.0.0 - singleton-bool ==0.1.6 - singleton-nats ==0.4.6 - - singletons ==3.0.2 - - singletons-base ==3.0 + - singletons ==3.0.1 + - singletons-base ==3.1 - singletons-presburger ==0.6.1.0 - - singletons-th ==3.0 - - siphash ==1.0.3 + - singletons-th ==3.1 - Sit ==0.2022.3.18 - sitemap-gen ==0.1.0.0 - - sized ==1.0.0.1 + - size-based ==0.1.3.1 + - sized ==1.0.0.2 - skein ==1.0.9.4 - skews ==0.1.0.3 - skip-var ==0.1.1.0 - - skylighting ==0.12.3.1 - - skylighting-core ==0.12.3.1 + - skylighting ==0.13.1.2 + - skylighting-core ==0.13.1.2 + - skylighting-format-ansi ==0.1 + - skylighting-format-blaze-html ==0.1.1 + - skylighting-format-latex ==0.1 - slack-progressbar ==0.1.0.1 - - slave-thread ==1.1.0.1 - - slist ==0.2.1.0 - - slynx ==0.6.1.1 + - slave-thread ==1.1.0.2 + - slynx ==0.7.0.1 - smallcheck ==1.2.1 - - smash ==0.1.3 - - smash-microlens ==0.1.0.2 - smtp-mail ==0.3.0.0 - - snap-blaze ==0.2.1.5 - - snap-core ==1.0.5.0 - - snappy ==0.2.0.2 - snowflake ==0.1.1.1 - - soap ==0.2.3.6 - - soap-openssl ==0.1.0.2 - - soap-tls ==0.1.1.4 - socket ==0.8.3.0 - socks ==0.6.1 - solana-staking-csvs ==0.1.2.0 @@ -2273,24 +2372,25 @@ default-package-overrides: - sop-core ==0.5.0.2 - sort ==1.0.0.0 - sorted-list ==0.2.1.0 - - sound-collage ==0.2.1 - sourcemap ==0.1.7 - sox ==0.2.3.1 - - soxlib ==0.0.3.1 - spacecookie ==1.0.0.2 - sparse-linear-algebra ==0.3.1 - - spatial-math ==0.5.0.1 + - spdx ==1.0.0.3 - special-values ==0.1.0.0 - speculate ==0.4.14 - speedy-slice ==0.3.2 - Spintax ==0.3.6 - splice ==0.6.1.1 - - splint ==1.0.2.1 - split ==0.2.3.5 - splitmix ==0.1.0.4 - - splitmix-distributions ==0.9.0.0 - - split-record ==0.1.1.4 + - splitmix-distributions ==1.0.0 + - Spock ==0.14.0.0 - Spock-api ==0.14.0.0 + - Spock-api-server ==0.14.0.0 + - Spock-core ==0.14.0.1 + - Spock-lucid ==0.4.0.1 + - Spock-worker ==0.3.1.0 - spoon ==0.3.1 - spreadsheet ==0.1.3.8 - sqlcli ==0.2.2.0 @@ -2301,19 +2401,19 @@ default-package-overrides: - srcloc ==0.6.0.1 - srt ==0.1.2.0 - srt-attoparsec ==0.1.0.0 - - srt-dhall ==0.1.0.0 - srt-formatting ==0.1.0.0 - stache ==2.3.3 + - stack ==2.9.1 - stack-all ==0.4.0.1 - stack-clean-old ==0.4.6 - - stackcollapse-ghc ==0.0.1.4 - stack-templatizer ==0.1.0.2 - state-codes ==0.1.3 - stateref ==0.3 + - statestack ==0.3.1 - StateVar ==1.2.2 - stateWriter ==0.3.0 - static-text ==0.2.0.7 - - statistics ==0.16.1.0 + - statistics ==0.16.1.2 - status-notifier-item ==0.3.1.0 - stb-image-redux ==0.2.1.2 - step-function ==0.2 @@ -2327,7 +2427,6 @@ default-package-overrides: - stm-lifted ==2.5.0.0 - STMonadTrans ==0.4.6 - stm-split ==0.0.2.1 - - stm-supply ==0.2.0.0 - stopwatch ==0.1.0.6 - storable-complex ==0.2.3.0 - storable-endian ==0.2.6.1 @@ -2337,28 +2436,32 @@ default-package-overrides: - store ==0.7.16 - store-core ==0.4.4.4 - store-streaming ==0.2.0.3 + - stratosphere ==0.60.0 - Stream ==0.4.7.2 - streaming ==0.2.3.1 - streaming-attoparsec ==1.0.0.1 - streaming-bytestring ==0.2.4 - streaming-cassava ==0.2.0.0 - streaming-commons ==0.2.2.5 + - streaming-wai ==0.1.1 - streamly ==0.8.1.1 - - streamly-bytestring ==0.1.4 - - streams ==3.3 + - streams ==3.3.1 - streamt ==0.5.0.1 - strict ==0.4.0.1 + - strict-base-types ==0.7 - strict-concurrency ==0.2.4.3 + - strict-lens ==0.4.0.2 - strict-list ==0.1.7 - strict-tuple ==0.1.5.2 - - strict-tuple-lens ==0.2 - strict-wrapper ==0.0.0.0 + - stringable ==0.1.3 - stringbuilder ==0.5.1 - string-class ==0.1.7.0 - string-combinators ==0.6.0.5 - string-conv ==0.2.0 - string-conversions ==0.4.0.1 - string-interpolate ==0.3.1.2 + - stringprep ==1.0.0 - string-qq ==0.0.4 - string-random ==0.1.4.3 - stringsearch ==0.3.6.6 @@ -2368,12 +2471,12 @@ default-package-overrides: - stripe-signature ==1.0.0.14 - stripe-wreq ==1.0.1.14 - strive ==6.0.0.4 - - strong-path ==1.1.4.0 + - strongweak ==0.3.2 - structs ==0.1.6 - structured ==0.1.1 - structured-cli ==2.7.0.1 + - stylish-haskell ==0.14.3.0 - subcategories ==0.2.0.0 - - sum-type-boilerplate ==0.1.1 - sundown ==0.6 - superbuffer ==0.3.1.2 - svg-builder ==0.1.1 @@ -2382,14 +2485,29 @@ default-package-overrides: - swagger2 ==2.8.6 - swish ==0.10.2.0 - syb ==0.7.2.2 + - syb-with-class ==0.6.1.14 + - sydtest ==0.13.0.0 + - sydtest-aeson ==0.1.0.0 + - sydtest-amqp ==0.1.0.0 + - sydtest-autodocodec ==0.0.0.0 - sydtest-discover ==0.0.0.2 + - sydtest-hedgehog ==0.3.0.1 + - sydtest-hedis ==0.0.0.0 + - sydtest-hspec ==0.3.0.2 + - sydtest-mongo ==0.0.0.0 + - sydtest-persistent ==0.0.0.1 + - sydtest-persistent-postgresql ==0.2.0.2 + - sydtest-persistent-sqlite ==0.2.0.2 + - sydtest-process ==0.0.0.0 + - sydtest-rabbitmq ==0.1.0.0 + - sydtest-servant ==0.2.0.2 + - sydtest-typed-process ==0.0.0.0 + - sydtest-wai ==0.2.0.0 + - sydtest-yesod ==0.3.0.1 - symbol ==0.2.4 - symengine ==0.1.2.0 - symmetry-operations-symbols ==0.0.2.1 - - synthesizer-alsa ==0.5.0.6 - synthesizer-core ==0.8.2.1 - - synthesizer-dimensional ==0.8.1 - - synthesizer-midi ==0.6.1.1 - sysinfo ==0.1.1 - system-argv0 ==0.1.1 - systemd ==2.3.0 @@ -2397,7 +2515,6 @@ default-package-overrides: - system-filepath ==0.4.14 - system-info ==0.5.2 - tabular ==0.2.2.8 - - tagchup ==0.4.1.1 - tagged ==0.8.6.1 - tagged-binary ==0.2.0.1 - tagged-identity ==0.1.3 @@ -2412,14 +2529,15 @@ default-package-overrides: - tardis ==0.4.4.0 - tasty ==1.4.2.3 - tasty-ant-xml ==1.1.8 + - tasty-autocollect ==0.3.2.0 - tasty-bench ==0.3.2 - - tasty-dejafu ==2.0.0.9 - - tasty-discover ==4.2.4 + - tasty-dejafu ==2.1.0.0 + - tasty-discover ==4.2.2 - tasty-expected-failure ==0.12.3 - tasty-fail-fast ==0.0.3 - tasty-focus ==1.0.1 - tasty-golden ==2.3.5 - - tasty-hedgehog ==1.1.0.0 + - tasty-hedgehog ==1.3.1.0 - tasty-hslua ==1.0.2 - tasty-hspec ==1.2.0.1 - tasty-html ==0.4.1.4 @@ -2438,36 +2556,41 @@ default-package-overrides: - tasty-test-reporter ==0.1.1.4 - tasty-th ==0.1.7 - tasty-wai ==0.1.2.0 - - TCache ==0.12.1 - tce-conf ==1.3 - tcp-streams ==1.0.1.1 - tdigest ==0.2.1.1 - teardown ==0.5.0.1 - - telegram-bot-simple ==0.4.5 + - telegram-bot-simple ==0.6 + - template ==0.2.0.10 - template-haskell-compat-v0208 ==0.1.9.1 - temporary ==1.3 - temporary-rc ==1.2.0.3 - temporary-resourcet ==0.1.0.1 - tensorflow-test ==0.1.0.0 - tensors ==0.1.5 - - termbox ==0.3.0 + - termbox ==1.1.0.1 + - termbox-banana ==1.0.0 + - termbox-bindings-c ==0.1.0 + - termbox-bindings-hs ==0.1.0 + - termbox-tea ==0.1.0 - terminal-progress-bar ==0.4.1 - terminal-size ==0.3.3 - - termonad ==4.2.0.1 + - termonad ==4.4.0.0 - test-framework ==0.8.2.0 - test-framework-hunit ==0.3.0.2 - test-framework-leancheck ==0.0.4 - test-framework-quickcheck2 ==0.3.0.5 - test-framework-smallcheck ==0.2 - test-fun ==0.1.0.0 + - testing-feat ==1.1.1.1 - testing-type-modifiers ==0.1.0.1 - - texmath ==0.12.4 - - text-ansi ==0.1.1 + - texmath ==0.12.5.4 + - text-ansi ==0.2.1 - text-binary ==0.2.1.1 - - text-builder ==0.6.6.5 - - text-builder-dev ==0.2.1 + - text-builder ==0.6.7 + - text-builder-dev ==0.3.3 - text-conversions ==0.3.1.1 - - text-icu ==0.7.1.0 + - text-icu ==0.8.0.2 - text-latin1 ==0.3.1 - text-ldap ==0.1.1.14 - textlocal ==0.1.0.5 @@ -2475,19 +2598,20 @@ default-package-overrides: - text-metrics ==0.3.2 - text-postgresql ==0.0.3.1 - text-printer ==0.5.0.2 - - text-regex-replace ==0.1.1.4 - - text-rope ==0.1 + - text-regex-replace ==0.1.1.5 + - text-rope ==0.2 - text-short ==0.1.5 - - text-show ==3.9.7 - - text-show-instances ==3.8.6 - - text-zipper ==0.11 + - text-show ==3.10 + - text-show-instances ==3.9.2 + - text-zipper ==0.12 - tfp ==1.0.2 - tf-random ==0.5 - th-abstraction ==0.4.5.0 - th-bang-compat ==0.0.1.0 - th-compat ==0.1.4 - th-constraint-compat ==0.0.1.0 - - th-desugar ==1.12 + - th-data-compat ==0.1.1.0 + - th-desugar ==1.13.1 - th-env ==0.1.1 - these ==1.1.1.1 - these-lens ==1.0.1.2 @@ -2495,7 +2619,7 @@ default-package-overrides: - these-skinny ==0.7.5 - th-expand-syns ==0.4.10.0 - th-extras ==0.0.0.6 - - th-lego ==0.3.0.1 + - th-lego ==0.3.0.2 - th-lift ==0.8.2 - th-lift-instances ==0.1.20 - th-nowq ==0.1.0.5 @@ -2504,16 +2628,19 @@ default-package-overrides: - thread-hierarchy ==0.3.0.2 - thread-local-storage ==0.2 - threads ==0.5.1.7 + - threads-extras ==0.1.0.3 - thread-supervisor ==0.2.0.0 - th-reify-compat ==0.0.1.5 - th-reify-many ==0.1.10 - through-text ==0.1.0.0 - th-strict-compat ==0.1.0.1 - - th-test-utils ==1.1.1 + - th-test-utils ==1.2.1 - th-utilities ==0.2.5.0 - - tidal ==1.7.10 + - tidal ==1.9.2 + - tidal-link ==1.0.1 - tile ==0.3.0.0 - time-compat ==1.9.6.1 + - time-domain ==0.1.0.1 - timeit ==2.0 - timelens ==0.2.0.2 - time-lens ==0.4.0.2 @@ -2521,35 +2648,39 @@ default-package-overrides: - time-locale-vietnamese ==1.0.0.0 - time-manager ==0.0.0 - time-parsers ==0.1.2.1 - - timerep ==2.0.1.0 - - timers-tick ==0.5.0.1 - - timer-wheel ==0.3.0 + - timerep ==2.1.0.0 + - timers-tick ==0.5.0.2 + - timer-wheel ==0.4.0.1 - timespan ==0.4.0.0 - time-units ==1.0.0 + - time-units-types ==0.2.0.1 - timezone-olson ==0.2.1 - timezone-olson-th ==0.1.0.11 - timezone-series ==0.1.13 - - tinylog ==0.15.0 - titlecase ==1.0.1 - tldr ==0.9.2 - tls ==1.5.8 - tls-debug ==0.4.8 - tls-session-manager ==0.0.4 - - tlynx ==0.6.1.1 + - tlynx ==0.7.0.1 - tmapchan ==0.0.3 - tmapmvar ==0.0.4 - tmp-postgres ==1.34.1.0 - - tmp-proc ==0.5.1.2 + - tmp-proc ==0.5.1.3 + - tmp-proc-postgres ==0.5.2.2 + - tmp-proc-rabbitmq ==0.5.1.2 + - tmp-proc-redis ==0.5.1.2 + - toml-reader ==0.2.0.0 - tophat ==1.0.5.1 - topograph ==1.0.0.2 + - torrent ==10000.1.1 - torsor ==0.1 - tostring ==0.2.1.1 - tracing ==0.0.7.3 - tracing-control ==0.0.7.3 - transaction ==0.1.1.3 - transformers-base ==0.4.6 - - transformers-bifunctors ==0.1 - - transformers-compat ==0.6.6 + - transformers-compat ==0.7.2 - transformers-either ==0.1.2 - transformers-fix ==1.0 - transient ==0.7.0.0 @@ -2562,8 +2693,7 @@ default-package-overrides: - triplesec ==0.2.2.1 - trivial-constraint ==0.7.0.0 - tsv2csv ==0.1.0.2 - - ttc ==1.1.1.1 - - ttl-hashtables ==1.4.1.0 + - ttc ==1.2.0.0 - ttrie ==0.1.2.2 - tuple ==0.3.0.2 - tuples ==0.1.0.0 @@ -2574,30 +2704,32 @@ default-package-overrides: - twitter-conduit ==0.6.1 - twitter-types ==0.11.0 - twitter-types-lens ==0.11.0 - - TypeCompose ==0.9.14 + - typecheck-plugin-nat-simple ==0.1.0.7 - typed-process ==0.2.10.1 + - typed-uuid ==0.2.0.0 - type-equality ==1 - - type-errors ==0.2.0.0 - - type-errors-pretty ==0.0.1.2 + - type-errors ==0.2.0.1 - type-fun ==0.1.3 - type-hint ==0.1 - type-level-integers ==0.0.1 - - type-level-kv-list ==1.1.0 + - type-level-kv-list ==2.0.0 - type-level-natural-number ==2.0 - type-level-numbers ==0.1.1.2 - - typelits-witnesses ==0.4.0.0 - type-map ==0.1.7.0 - type-natural ==1.1.0.1 - typenums ==0.1.4 - type-of-html ==1.6.2.0 - type-of-html-static ==0.1.0.2 - type-operators ==0.2.0.0 + - type-rig ==0.1 - type-spec ==0.4.0.0 - typography-geometry ==1.0.1.0 - tz ==0.1.3.6 - - tzdata ==0.2.20221028.0 + - tzdata ==0.2.20221129.0 + - tztime ==0.1.0.0 - ua-parser ==0.7.7.0 - uglymemo ==0.1.0.1 + - ulid ==0.3.2.0 - unagi-chan ==0.4.1.4 - unbounded-delays ==0.1.1.1 - unbound-generics ==0.4.2 @@ -2607,6 +2739,7 @@ default-package-overrides: - unconstrained ==0.1.0.2 - unexceptionalio ==0.5.1 - unexceptionalio-trans ==0.5.1 + - unfork ==1.0.0.0 - unicode ==0.0.1.1 - unicode-collation ==0.1.3.3 - unicode-data ==0.3.1 @@ -2630,27 +2763,28 @@ default-package-overrides: - universe-instances-extended ==1.1.3 - universe-reverse-instances ==1.1.1 - universe-some ==1.2.1 - - universum ==1.7.3 + - universum ==1.8.1 - unix-bytestring ==0.3.7.8 - unix-compat ==0.5.4 - unix-time ==0.4.8 + - unjson ==0.15.4 - unliftio ==0.2.23.0 - unliftio-core ==0.2.0.1 - unliftio-path ==0.0.2.0 - unliftio-pool ==0.2.2.0 - unliftio-streams ==0.1.1.1 - unlit ==0.4.0.0 - - unordered-containers ==0.2.17.0 + - unordered-containers ==0.2.19.1 - unsafe ==0.0 - urbit-hob ==0.3.3 - uri-bytestring ==0.3.3.1 - uri-bytestring-aeson ==0.1.0.8 - uri-encode ==1.5.0.7 - url ==2.1.3 + - userid ==0.1.3.7 - users ==0.5.0.0 - users-postgresql-simple ==0.5.0.2 - users-test ==0.5.0.1 - - utf8-light ==0.4.2 - utf8-string ==1.0.2 - utility-ht ==0.0.16 - uuid ==1.3.15 @@ -2659,8 +2793,11 @@ default-package-overrides: - valida-base ==0.2.0 - validate-input ==0.5.0.0 - validation ==1.1.2 + - validationt ==0.3.0 - validity ==0.12.0.1 + - validity-aeson ==0.2.0.5 - validity-bytestring ==0.4.1.1 + - validity-case-insensitive ==0.0.0.0 - validity-containers ==0.5.0.4 - validity-path ==0.4.0.1 - validity-persistent ==0.0.0.0 @@ -2686,26 +2823,27 @@ default-package-overrides: - vector-builder ==0.3.8.4 - vector-bytes-instances ==0.1.1 - vector-circular ==0.1.4 + - vector-extras ==0.2.7.1 - vector-instances ==3.4 - vector-mmap ==0.0.3 - vector-rotcev ==0.1.0.1 - vector-sized ==1.5.0 - vector-space ==0.16 - vector-split ==1.0.0.2 + - vector-stream ==0.1.0.0 - vector-th-unbox ==0.2.2 - - vectortiles ==1.5.1 - verbosity ==0.4.0.0 - versions ==5.0.4 - vformat ==0.14.1.0 - vformat-time ==0.1.0.0 - ViennaRNAParser ==1.3.3 - - vinyl ==0.13.3 + - vinyl ==0.14.3 - vinyl-loeb ==0.0.1.0 - vivid ==0.5.2.0 - vivid-osc ==0.5.0.0 - vivid-supercollider ==0.4.1.2 - void ==0.7.3 - - vty ==5.33 + - vty ==5.37 - wai ==3.2.3 - wai-app-static ==3.1.7.4 - wai-cli ==0.2.3 @@ -2713,32 +2851,35 @@ default-package-overrides: - wai-cors ==0.2.7 - wai-enforce-https ==1.0.0.0 - wai-eventsource ==3.0.0 - - wai-extra ==3.1.12.1 + - wai-extra ==3.1.13.0 - wai-feature-flags ==0.1.0.4 - wai-handler-launch ==3.0.3.1 - wai-logger ==2.4.0 + - wai-middleware-bearer ==1.0.3 - wai-middleware-caching ==0.1.0.2 - wai-middleware-caching-lru ==0.1.0.0 - wai-middleware-caching-redis ==0.2.0.0 - wai-middleware-clacks ==0.1.0.1 - wai-middleware-delegate ==0.1.3.1 + - wai-middleware-metrics ==0.2.4 - wai-middleware-prometheus ==1.0.0.1 - wai-middleware-static ==0.9.2 - - wai-rate-limit ==0.2.0.0 + - wai-rate-limit ==0.3.0.0 - wai-rate-limit-redis ==0.2.0.1 - - wai-saml2 ==0.2.1.3 + - wai-saml2 ==0.3.0.1 - wai-session ==0.3.3 - wai-session-postgresql ==0.2.1.3 - wai-session-redis ==0.1.0.5 - wai-slack-middleware ==0.2.0 - - wai-transformers ==0.1.0 - wai-websockets ==3.0.1.2 - wakame ==0.1.0.0 - - warp ==3.3.21 - - warp-tls ==3.3.2 + - warp ==3.3.23 + - warp-tls ==3.3.4 - warp-tls-uid ==0.2.0.6 - wave ==0.2.0 - wcwidth ==0.0.2 + - webby ==1.1.0 + - webdriver ==0.10.0.0 - webex-teams-api ==0.2.0.1 - webex-teams-conduit ==0.2.0.1 - webgear-core ==1.0.4 @@ -2750,33 +2891,29 @@ default-package-overrides: - web-routes-boomerang ==0.28.4.3 - web-routes-happstack ==0.23.12.2 - web-routes-hsp ==0.24.6.2 + - web-routes-th ==0.22.7 - web-routes-wai ==0.24.3.2 - webrtc-vad ==0.1.0.3 - websockets ==0.12.7.3 - - websockets-simple ==0.2.0 - weigh ==0.0.16 - - wide-word ==0.1.1.2 - - wikicfp-scraper ==0.1.0.12 - - wild-bind ==0.1.2.8 - - wild-bind-x11 ==0.2.0.14 + - wide-word ==0.1.3.0 - Win32 ==2.12.0.1 - Win32-notify ==0.3.0.3 - windns ==0.1.0.1 - - wire-streams ==0.1.1.0 - - witch ==1.0.2.0 -with-compiler: ghc-9.0.2 + - witch ==1.1.5.0 +with-compiler: ghc-9.2.5 - withdependencies ==0.3.0 - witherable ==0.4.2 - within ==0.2.0.1 - with-location ==0.1.0 - with-utf8 ==1.0.2.3 - - witness ==0.5 + - witness ==0.6.1 - wizards ==1.0.3 - wl-pprint ==1.2.1 - wl-pprint-annotated ==0.1.0.1 - - wl-pprint-console ==0.1.0.2 - wl-pprint-text ==1.2.0.2 - word8 ==0.1.3 + - word-compat ==0.0.6 - wordpress-auth ==1.0.0.1 - word-trie ==0.3.0 - word-wrap ==0.5 @@ -2788,7 +2925,7 @@ with-compiler: ghc-9.0.2 - writer-cps-mtl ==0.1.1.6 - writer-cps-transformers ==0.5.6.1 - wss-client ==0.3.0.0 - - wuss ==1.1.19 + - wuss ==2.0.0.2 - X11 ==1.10.3 - X11-xft ==0.3.4 - x11-xim ==0.0.9.0 @@ -2800,23 +2937,24 @@ with-compiler: ghc-9.0.2 - xdg-basedir ==0.2.2 - xdg-desktop-entry ==0.1.1.1 - xdg-userdirs ==0.1.0.2 - - xeno ==0.5 - - xlsx ==0.8.4 + - xeno ==0.6 + - xlsx ==1.0.0.1 - xlsx-tabular ==0.2.2.1 - xml ==1.3.14 - xml-basic ==0.1.3.1 - - xmlbf ==0.6.1 - - xmlbf-xeno ==0.2 + - xmlbf ==0.6.2 + - xmlbf-xeno ==0.2.1 - xmlbf-xmlhtml ==0.2 - xml-conduit ==1.9.1.1 - xml-conduit-writer ==0.1.1.2 - xmlgen ==0.6.2.2 - xml-hamlet ==0.5.0.2 - xml-helpers ==1.0.0 - - xmlhtml ==0.2.5.2 + - xmlhtml ==0.2.5.3 - xml-html-qq ==0.1.0.1 - xml-indexed-cursor ==0.1.1.0 - - xml-parser ==0.1.1 + - xml-lens ==0.3.1 + - xml-parser ==0.1.1.1 - xml-picklers ==0.3.6 - xml-to-json-fast ==2.0.0 - xml-types ==0.3.8 @@ -2824,11 +2962,11 @@ with-compiler: ghc-9.0.2 - xmonad-contrib ==0.17.1 - xmonad-extras ==0.17.0 - xor ==0.0.1.1 - - xss-sanitize ==0.3.7 + - xss-sanitize ==0.3.7.1 - xxhash-ffi ==0.2.0.0 - yaml ==0.11.8.0 - - yamlparse-applicative ==0.2.0.1 - - yaml-unscrambler ==0.1.0.9 + - yaml-unscrambler ==0.1.0.12 + - Yampa ==0.13.7 - yarn-lock ==0.6.5 - yeshql-core ==4.2.0.0 - yesod ==1.6.2.1 @@ -2840,6 +2978,7 @@ with-compiler: ghc-9.0.2 - yesod-bin ==1.6.2.2 - yesod-core ==1.6.24.0 - yesod-eventsource ==1.6.0.1 + - yesod-fb ==0.6.1 - yesod-form ==1.7.3 - yesod-form-bootstrap4 ==3.0.1 - yesod-gitrepo ==0.3.0 @@ -2860,22 +2999,20 @@ with-compiler: ghc-9.0.2 - yjsvg ==0.2.0.1 - yjtools ==0.9.18 - yoga ==0.0.0.5 - - youtube ==0.2.1.1 - - zenacy-html ==2.0.4 - - zenacy-unicode ==1.0.1 - - zero ==0.1.5 + - zenacy-html ==2.0.7 + - zenacy-unicode ==1.0.2 - zeromq4-haskell ==0.8.0 - zeromq4-patterns ==0.3.1.0 + - zigzag ==0.0.1.0 - zim-parser ==0.2.1.0 - zio ==0.1.0.2 - zip ==1.7.2 - zip-archive ==0.4.2.2 - zipper-extra ==0.1.3.2 - zippers ==0.3.2 - - zip-stream ==0.2.1.0 + - zip-stream ==0.2.2.0 - zlib ==0.6.3.0 - zlib-bindings ==0.1.1.5 - - zlib-lens ==0.1.2.1 - zot ==0.0.3 - zstd ==0.1.3.0 - ztail ==1.2.0.3 diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml index 64bfa3ad87219..32c5e2f327423 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -6,6 +6,7 @@ dont-distribute-packages: - 4Blocks - AC-Vector-Fancy + - ADPfusion - ADPfusionForest - ADPfusionSet - AERN-Net @@ -33,15 +34,21 @@ dont-distribute-packages: - BerlekampAlgorithm - BioHMM - Biobase + - BiobaseBlast - BiobaseDotP + - BiobaseENA - BiobaseEnsembl - BiobaseFR3D + - BiobaseFasta - BiobaseHTTP - BiobaseHTTPTools - BiobaseInfernal - BiobaseMAF - BiobaseTrainingData + - BiobaseTurner + - BiobaseTypes - BiobaseVienna + - BiobaseXNA - BirdPP - Bitly - BlastHTTP @@ -52,6 +59,7 @@ dont-distribute-packages: - CC-delcont-alt - CMCompare - CPBrainfuck + - CSPM-FiringRules - CSPM-Interpreter - CSPM-ToProlog - CSPM-cspm @@ -69,10 +77,13 @@ dont-distribute-packages: - DMuCheck - DOM - DP + - DRBG + - DSA - DSH - DSTM - Dangerous - DarcsHelpers + - DeepArrow - DefendTheKing - DifferenceLogic - DisTract @@ -85,7 +96,6 @@ dont-distribute-packages: - Dust-tools-pcap - DysFRP-Cairo - DysFRP-Craftwerk - - EdisonCore - EditTimeReport - EntrezHTTP - EsounD @@ -94,6 +104,7 @@ dont-distribute-packages: - Eternal10Seconds - Etherbunny - EventSocket + - Extra - FComp - FM-SBLEX - FTPLine @@ -101,7 +112,6 @@ dont-distribute-packages: - FailureT - FermatsLastMargin - FieldTrip - - FilePather - Fin - Finance-Treasury - FiniteMap @@ -123,8 +133,8 @@ dont-distribute-packages: - GPipe-Collada - GPipe-Examples - GPipe-GLFW + - GPipe-GLFW4 - GPipe-TextureLoad - - Gamgine - GeBoP - GenI - GenSmsPdu @@ -142,9 +152,9 @@ dont-distribute-packages: - GrowlNotify - Gtk2hsGenerics - GtkGLTV + - GtkTV - GuiHaskell - GuiTV - - H - HAppS-Data - HAppS-IxSet - HAppS-Server @@ -176,6 +186,7 @@ dont-distribute-packages: - HPhone - HPlot - HPong + - HQu - HROOT - HROOT-graf - HROOT-hist @@ -189,7 +200,6 @@ dont-distribute-packages: - HStringTemplateHelpers - HTab - HXMPP - - HaMinitel - HaRe - HaTeX-meta - HaTeX-qq @@ -222,6 +232,7 @@ dont-distribute-packages: - IORefCAS - IndexedList - InfixApplicative + - InternedData - JSON-Combinator - JSON-Combinator-Examples - Javasf @@ -239,7 +250,6 @@ dont-distribute-packages: - LambdaINet - LambdaPrettyQuote - LambdaShell - - Lambdaya - Lattices - LinearSplit - LinkChecker @@ -255,18 +265,16 @@ dont-distribute-packages: - MFlow - MIP-glpk - MSQueue + - MagicHaskeller - MailchimpSimple - Map - - MaybeT-transformers - MetaObject - Metrics - Mhailist - Michelangelo - MicrosoftTranslator - MissingPy - - MonadCatchIO-mtl - MonadCatchIO-mtl-foreign - - MonadCatchIO-transformers-foreign - MonadLab - Monaris - Monatron-IO @@ -276,8 +284,9 @@ dont-distribute-packages: - MuCheck-QuickCheck - MuCheck-SmallCheck - MutationOrder - - NXT + - NGLess - NaperianNetCDF + - NaturalLanguageAlphabets - NearContextAlgebra - Ninjas - NoSlow @@ -288,7 +297,6 @@ dont-distribute-packages: - Nomyx-Web - NonEmptyList - Nussinov78 - - OSM - OnRmt - OpenAFP-Utils - OpenGLCheck @@ -298,7 +306,10 @@ dont-distribute-packages: - PageIO - Paillier - Paraiso + - Parallel-Arrows-BaseSpec - Parallel-Arrows-Eden + - Parallel-Arrows-Multicore + - Parallel-Arrows-ParMonad - PermuteEffects - Plot-ho-matic - PlslTools @@ -309,10 +320,12 @@ dont-distribute-packages: - Pup-Events-Demo - Quelea - RESTng + - RJson - RMP - RNAFold - RNAFoldProgs - RNAdesign + - RNAdraw - RNAlien - RNAwolf - Ranka @@ -337,13 +350,17 @@ dont-distribute-packages: - Shellac-haskeline - Shellac-readline - ShortestPathProblems + - Shpadoinkle - Shpadoinkle-backend-pardiff + - Shpadoinkle-backend-snabbdom - Shpadoinkle-backend-static - Shpadoinkle-developer-tools - Shpadoinkle-disembodied - Shpadoinkle-examples - Shpadoinkle-html + - Shpadoinkle-lens - Shpadoinkle-router + - Shpadoinkle-streaming - Shpadoinkle-template - Shpadoinkle-widgets - SimpleGL @@ -351,6 +368,7 @@ dont-distribute-packages: - SimpleServer - Smooth - Snusmumrik + - SoOSiM - SoccerFun - SoccerFunGL - SourceGraph @@ -358,7 +376,9 @@ dont-distribute-packages: - SpinCounter - StockholmAlignment - Strafunski-Sdf2Haskell + - SybWidget - SyntaxMacros + - TV - Taxonomy - TaxonomyTools - TeX-my-math @@ -370,9 +390,9 @@ dont-distribute-packages: - TypeIlluminator - UMM - URLT + - UTFTConverter - UrlDisp - - Villefort - - WAVE + - ViennaRNA-extras - WEditorBrick - WEditorHyphen - WL500gPControl @@ -385,17 +405,18 @@ dont-distribute-packages: - WebCont - Wired - WordAlignment + - Workflow - WxGeneric - XML - XMPP - XSaiga - - YACPong - Yablog - Yogurt-Standalone - Z-Botan - Z-IO - Z-MessagePack - Z-YAML + - ZipFold - a50 - abcBridge - abstract-par-accelerate @@ -420,17 +441,16 @@ dont-distribute-packages: - access-token-provider - acme-php - acme-safe - - acousticbrainz-client - activehs - actor - acts - adhoc-network - adict - - adjunction - adp-multi-monadiccp - aeson-native - affine - afv + - ag-pictgen - agda-server - agda-snippets-hakyll - agentx @@ -442,11 +462,8 @@ dont-distribute-packages: - algebra-sql - algebraic - algolia - - algorithmic-composition-additional - - algorithmic-composition-basic - - algorithmic-composition-complex - algorithmic-composition-frequency-shift - - algorithmic-composition-overtones + - align-audio - alms - alpha - alsa-gui @@ -597,7 +614,6 @@ dont-distribute-packages: - amby - ampersand - amqp-streamly - - analyze-client - anatomy - animate-example - animate-frames @@ -658,7 +674,7 @@ dont-distribute-packages: - ascii-cows - ascii-table - asic - - asif + - asil - assert4hs-hspec - assert4hs-tasty - assimp @@ -666,16 +682,16 @@ dont-distribute-packages: - astview - aterm-utils - atlassian-connect-core - - atlassian-connect-descriptor - atmos-dimensional-tf + - atom-msp430 - atomic-primops-foreign - atp - ats-format - - ats-pkg - attoparsec-enumerator - attoparsec-iteratee - attoparsec-text-enumerator - atuin + - audacity - audiovisual - aura - authoring @@ -728,7 +744,6 @@ dont-distribute-packages: - bamstats - barley - base32-bytestring - - base64-bytes - baserock-schema - basic - batchd @@ -738,11 +753,10 @@ dont-distribute-packages: - batching - battlenet-yesod - battleplace-api + - battleship-combinatorics - battleships - bayes-stack - bbi - - bcp47 - - bcp47-orphans - bdcs - bdcs-api - beam-automigrate @@ -752,9 +766,8 @@ dont-distribute-packages: - beeminder-api - bein - belka - - berp - bff - - bglib + - bidirectionalization-combined - bifunctor - billboard-parser - billeksah-forms @@ -770,7 +783,6 @@ dont-distribute-packages: - bindings-ppdev - bindynamic - binembed-example - - binrep - bioace - bioalign - biofasta @@ -790,7 +802,6 @@ dont-distribute-packages: - bitcoin-api-extra - bitcoin-block - bitcoin-compact-filters - - bitcoin-scripting - bitcoin-tx - bitcoin-types - bitcoind-regtest @@ -800,10 +811,12 @@ dont-distribute-packages: - bittorrent - bla - blakesum-demo + - blas-comfort-array - blastxml - blatex - blaze-builder-enumerator - blaze-colonnade + - blaze-html-contrib - ble - blink1 - blip @@ -813,20 +826,23 @@ dont-distribute-packages: - blubber - bluetile - blunt - - bnb-staking-csvs - bno055-haskell + - board-games - bogre-banana - boilerplate - bond - bond-haskell - bond-haskell-compiler - bookhound-format + - bookkeeper - bookkeeper-permissions - boomslang - - boopadoop + - boots-app - boots-cloud - boots-web - borel + - both + - bowntz - box-csv - box-socket - breakout @@ -835,19 +851,26 @@ dont-distribute-packages: - bricks-parsec - bricks-rendering - bricks-syntax + - brittany + - brittany_0_13_1_2 + - broadcast-chan-conduit + - broadcast-chan-pipes - bronyradiogermany-streaming - btc-lsp - btree + - btree-concurrent - buchhaltung - buildbox-tools - buildwrapper - bulletproofs - bulmex - burnt-explorer - - bus-pirate - buster-gtk - buster-network + - butcher - butterflies + - bv-sized + - bv-sized-lens - bytable - bytelog - bytepatch @@ -863,6 +886,7 @@ dont-distribute-packages: - cabal2json - cabalmdvrpm - cabalrpmdeps + - caffegraph - cake - cakyrespa - cal3d-examples @@ -871,6 +895,7 @@ dont-distribute-packages: - calculator - caldims - call + - camfort - campfire - canteven-http - cao @@ -878,6 +903,7 @@ dont-distribute-packages: - capnp - captcha-2captcha - captcha-capmonster + - captcha-core - car-pool - carboncopy - cartel @@ -896,7 +922,6 @@ dont-distribute-packages: - casr-logbook-reports-html - casr-logbook-reports-meta - casr-logbook-reports-meta-html - - cassandra-cql - cassandra-thrift - cassy - casui @@ -915,6 +940,8 @@ dont-distribute-packages: - cfipu - cflp - cfopu + - cgi-undecidable + - cgi-utils - chainweb-mining-client - chalkboard-viewer - chapelure @@ -925,21 +952,20 @@ dont-distribute-packages: - cheapskate-terminal - check-pvp - chevalier-common + - chiasma - chiasma-test - chitauri - choose-exe - chorale-geo - chp-mtl - chp-plus + - chp-spec - chp-transformers - - chr-core - chr-lang - chromatin - - chronograph - chu2 - chuchu - chunks - - ciphersaber2 - citation-resolve - citeproc-hs-pandoc-filter - clac @@ -947,31 +973,32 @@ dont-distribute-packages: - claferIG - claferwiki - clash + - clash-ghc + - clash-lib + - clash-lib-hedgehog + - clash-multisignal + - clash-prelude-hedgehog + - clash-prelude-quickcheck + - clash-shake + - clash-systemverilog + - clash-verilog + - clash-vhdl + - clashilator - classify-frog - classy-miso - - clckwrks - - clckwrks-cli - clckwrks-dot-com - - clckwrks-plugin-bugs - clckwrks-plugin-ircbot - - clckwrks-plugin-mailinglist - - clckwrks-plugin-media - - clckwrks-plugin-page - - clckwrks-plugin-redirect - - clckwrks-theme-bootstrap - - clckwrks-theme-clckwrks - - clckwrks-theme-geo-bootstrap - cless - cleveland - click-clack + - clickhouse-haskell - clifford - clippings - - clocked - cloud-haskell - cloud-seeder - cloudyfs + - clr-bindings - clua - - clustering - clustertools - clutterhs - cmathml3 @@ -981,13 +1008,13 @@ dont-distribute-packages: - co-feldspar - cobot-io - codec + - codec-libevent - codec-rpm - codemonitor - coformat - cognimeta-utils - coinbase-exchange - colada - - colchis - collapse-duplication - collection-json - collections-base-instances @@ -999,17 +1026,20 @@ dont-distribute-packages: - columbia - columnar - comark - - comic - - commodities + - comfort-array + - comfort-array-shape + - comfort-fftw + - commsec - commsec-keyexchange - comonad-random - compaREST - compact-mutable + - compact-mutable-vector + - compact-socket - compactable - compdata-automata - compdata-dags - compdata-param - - compdoc-dhall-decoder - complexity - comprehensions-ghc - compstrat @@ -1034,7 +1064,9 @@ dont-distribute-packages: - config-select - configifier - configurator-ng + - conic-graphs - constrained-category + - constrained-platform-instances - constraint - constraint-manip - constraint-reflection @@ -1047,12 +1079,8 @@ dont-distribute-packages: - continuum-client - control - control-monad-attempt - - control-monad-exception-monadsfd - - contstuff-monads-tf - - contstuff-transformers - conversions - convert - - convert-annotation - convertible-ascii - convertible-text - coordinate @@ -1061,9 +1089,8 @@ dont-distribute-packages: - copilot-frp-sketch - copilot-language - copilot-libraries + - copilot-sbv - copilot-theorem - - core-webserver-servant - - core-webserver-warp - coroutine-enumerator - coroutine-iteratee - couch-simple @@ -1077,6 +1104,7 @@ dont-distribute-packages: - cqrs-sqlite3 - cqrs-test - cqrs-testkit + - crackNum - craft - craftwerk-cairo - craftwerk-gtk @@ -1087,26 +1115,32 @@ dont-distribute-packages: - crf-chain1-constrained - crf-chain2-generic - crf-chain2-tiers + - criterion-compare - criu-rpc - crockford - cron-compat - crypto-classical - crypto-conduit - crypto-pubkey + - crypto-sodium - cryptocipher - cryptoids - cryptoids-class - cryptol - crystalfontz + - csound-catalog + - csound-controllers + - csound-expression + - csound-expression-opcodes + - csound-expression-typed + - csound-sampler - cspmchecker - csv-enumerator - ctpl - cube - cuckoo - - cursedcsv - cv-combinators - cypher - - dahdit - dapi - darcs-benchmark - darcs-beta @@ -1116,20 +1150,17 @@ dont-distribute-packages: - darkplaces-demo - darkplaces-rcon-util - dash-haskell - - data-accessor-monads-fd - data-basic - data-cycle + - data-default-extra - data-diverse-lens - - data-elf - data-layer - - data-lens-fd - - data-lens-ixset - - data-lens-template - data-object-json - data-object-yaml - data-result - data-rtuple - data-structure-inferrer + - database-id-groundhog - datadog-tracing - datafix - dataflow @@ -1142,6 +1173,7 @@ dont-distribute-packages: - dbus-client - ddate - ddc-build + - ddc-core - ddc-core-babel - ddc-core-eval - ddc-core-flow @@ -1174,9 +1206,6 @@ dont-distribute-packages: - delimiter-separated - delta - delta-h - - dep-t-advice - - dep-t-dynamic - - dep-t-value - dependent-literals-plugin - dependent-state - depends @@ -1191,6 +1220,7 @@ dont-distribute-packages: - dewdrop - dfinity-radix-tree - dhall-recursive-adt + - dhall-secret - dia-functions - diagrams-haddock - diagrams-html5 @@ -1201,11 +1231,13 @@ dont-distribute-packages: - dialog - diff - difference-monoid - - differential - digestive-functors-hsp + - dimensional-tf + - dimensions - dingo-core - dingo-example - dingo-widgets + - diohsc - diplomacy-server - direct-rocksdb - directory-contents @@ -1213,7 +1245,6 @@ dont-distribute-packages: - discogs-haskell - discord-gateway - discord-hs - - discord-register - discord-rest - disposable - distributed-fork @@ -1244,8 +1275,7 @@ dont-distribute-packages: - dmenu-pkill - dmenu-pmount - dmenu-search - - dnscache - - dobutokO-effects + - dnf-repo - dobutokO-poetry - dobutokO-poetry-general - dobutokO-poetry-general-languages @@ -1253,12 +1283,7 @@ dont-distribute-packages: - dobutokO3 - dobutokO4 - doc-review - - domain - - domain-aeson - - domain-cereal - - domain-optics - dormouse-client - - dotparse - dovetail - dovetail-aeson - dow @@ -1270,21 +1295,21 @@ dont-distribute-packages: - dph-prim-interface - dph-prim-par - dph-prim-seq - - drama - dropbox-sdk - dropsolve - dsh-sql - dsmc-tools - dtd - - dtw - - dumb-cas - dvda - dynamic-cabal - dynamic-plot - dynamic-pp - dynamodb-simple - dynobud + - easytensor + - easytensor-vulkan - ec2-unikernel + - eccrypto-ed25519-bindings - ecdsa - edenskel - edentv @@ -1292,8 +1317,8 @@ dont-distribute-packages: - edges - editable - edits + - effect-monad - effective-aspects-mzv - - eflint - egison - egison-pattern-src-haskell-mode - egison-pattern-src-th-mode @@ -1303,14 +1328,18 @@ dont-distribute-packages: - ekg-carbon - ekg-cloudwatch - ekg-wai + - elasticsearch-interchange - electrs-client - elerea-examples + - eliminators + - eliminators_0_9_1 - elliptic-curve - elsa - emacs-keys - email - emailparse - embroidery + - emd - engine-io-growler - engine-io-snap - engine-io-wai @@ -1324,12 +1353,21 @@ dont-distribute-packages: - enumerator-tf - enumfun - ephemeral + - erf-native - eros-client - eros-http - error-message - errors-ext - ersatz-toysat - esotericbot + - essence-of-live-coding-PortMidi + - essence-of-live-coding-gloss + - essence-of-live-coding-gloss-example + - essence-of-live-coding-pulse + - essence-of-live-coding-pulse-example + - essence-of-live-coding-quickcheck + - essence-of-live-coding-vivid + - essence-of-live-coding-warp - estimators - estreps - eternity @@ -1340,20 +1378,22 @@ dont-distribute-packages: - ethereum-analyzer-webui - ethereum-client-haskell - ethereum-merkle-patricia-db + - eths-rlp - euphoria - - eve-cli - event-monad + - eventful-core - eventful-dynamodb + - eventful-memory - eventful-postgresql + - eventful-sql-common - eventful-sqlite + - eventful-test-helpers - eventloop - eventsource-geteventstore-store - eventsource-store-specs - eventsource-stub-store - - eventuo11y-batteries - - eventuo11y-json - every-bit-counts - - exception-monads-fd + - ewe - exference - exinst-aeson - exinst-bytes @@ -1363,6 +1403,7 @@ dont-distribute-packages: - exinst-serialise - exist - exist-instances + - exon - expand - expat-enumerator - expiring-containers @@ -1373,8 +1414,6 @@ dont-distribute-packages: - expressions-z3 - extemp - extended-containers-lens - - extensible-data - - external-sort - extract-dependencies - factual-api - fadno @@ -1383,11 +1422,9 @@ dont-distribute-packages: - family-tree - fast-bech32 - fastcdc + - fastcgi - fastirc - - fastly - - fastparser - fault-tree - - fay - fay-base - fay-builder - fay-dom @@ -1401,6 +1438,7 @@ dont-distribute-packages: - fay-websockets - fbrnch - fcd + - fckeditor - feature-flipper-postgres - fedora-composes - fedora-img-dl @@ -1416,17 +1454,16 @@ dont-distribute-packages: - fei-modelzoo - fei-nn - feldspar-compiler - - feldspar-language - festung - ffmpeg-tutorials - ficketed - - fields - filepath-crypto - filepath-io-access - filesystem-abstractions - filesystem-enumerator - find-clumpiness - findhttp + - finitary - finitary-derive - finitary-optics - finite-table @@ -1435,14 +1472,12 @@ dont-distribute-packages: - fix-parser-simple - fixed-point-vector - fixed-point-vector-space - - fixed-precision - fixhs - flashblast - flatbuffers - flexiwrap - flexiwrap-smallcheck - flite - - flowdock-api - flower - flowsim - fltkhs-demos @@ -1456,14 +1491,14 @@ dont-distribute-packages: - foldable1 - follower - foo - - formal - format - format-status - - forml - formlets - formlets-hsp - forsyde-deep - forth-hll + - fortran-src + - fortran-src-extras - fortran-vars - foscam-directory - foscam-sort @@ -1472,6 +1507,8 @@ dont-distribute-packages: - fpnla-examples - frame-markdown - freckle-app + - freckle-app_1_8_1_0 + - free-functors - free-game - free-theorems-counterexamples - free-theorems-seq @@ -1480,7 +1517,7 @@ dont-distribute-packages: - freekick2 - freelude - freer-converse - - freetype-simple + - fresnel-fused-effects - front - frpnow-gloss - frpnow-gtk @@ -1500,12 +1537,13 @@ dont-distribute-packages: - functor-combo - funflow - funflow-nix + - fungll-combinators - funion - funnyprint - funsat + - fused-effects-squeal - fwgl-glfw - fwgl-javascript - - fxpak - g2 - g2q - gact @@ -1523,7 +1561,9 @@ dont-distribute-packages: - gelatin-gl - gelatin-sdl2 - gelatin-shaders + - gemini-router - gemini-textboard + - generic-accessors - generic-override-aeson - generics-mrsop-gdiff - genesis @@ -1539,22 +1579,23 @@ dont-distribute-packages: - genvalidity-sydtest-hashable - genvalidity-sydtest-lens - genvalidity-sydtest-persistent + - geo-uk - geodetic - geolite-csv - getemx + - gf - ghc-debug-brick - - ghc-debug-client - - ghc-debug-common - - ghc-debug-stub - ghc-imported-from - ghc-instances - ghc-mod - ghc-session - ghc-tags-plugin - ghci-pretty + - ghcjs-dom-hello - ghcjs-dom-webkit - ghcjs-fetch - ghcjs-hplay + - ghcup - ght - gi-cairo-again - gi-clutter @@ -1562,12 +1603,11 @@ dont-distribute-packages: - gi-ges - gi-gsk - gi-gstpbutils + - gi-gtk-declarative-app-simple - gi-gtk_4_0_6 - - gipeda - git-config - git-fmt - git-gpush - - git-monitor - git-object - git-remote-ipfs - git-sanity @@ -1575,6 +1615,7 @@ dont-distribute-packages: - github-webhook-handler-snap - gitlib-cross - gitlib-s3 + - gitson - givegif - gladexml-accessor - glazier @@ -1785,6 +1826,7 @@ dont-distribute-packages: - gogol-youtube-reporting - google-drive - google-mail-filters + - google-maps-geocoding - googleplus - gore-and-ash-actor - gore-and-ash-async @@ -1800,6 +1842,7 @@ dont-distribute-packages: - graflog - grammar-combinators - grapefruit-examples + - grapefruit-frp - grapefruit-records - grapefruit-ui - grapefruit-ui-gtk @@ -1817,12 +1860,17 @@ dont-distribute-packages: - graphql-client - graphtype - greencard-lib + - grenade - gridbounds - gridland - groot - gross - groundhog-converters - groundhog-inspector + - groundhog-mysql + - groundhog-postgresql + - groundhog-sqlite + - groundhog-th - grpc-etcd-client - grpc-haskell - grpc-haskell-core @@ -1833,6 +1881,7 @@ dont-distribute-packages: - gsmenu - gstorable - gtfs + - gtfs-realtime - gtk-serialized-event - gtk2hs-cast-glade - gtk2hs-cast-gnomevfs @@ -1842,7 +1891,6 @@ dont-distribute-packages: - gtkimageview - gtkrsync - guarded-rewriting - - hArduino - hOff-display - hPDB - hPDB-examples @@ -1851,18 +1899,21 @@ dont-distribute-packages: - hablog - hack-contrib - hack-contrib-press + - hack-frontend-monadcgi - hack-handler-epoll - hack-handler-evhttp - hack-handler-fastcgi + - hack-handler-happstack - hack-handler-hyena + - hack-handler-kibro - hack-handler-simpleserver - hack-middleware-cleanpath - hack-middleware-clientsession - hack-middleware-jsonp + - hack2-contrib-extra - hack2-handler-happstack-server - hack2-handler-mongrel2-http - hack2-handler-snap-server - - hackage-mirror - hackage2twitter - hackmanager - haddock @@ -1880,7 +1931,7 @@ dont-distribute-packages: - hall-symbols - halma-gui - halma-telegram-bot - - ham + - hamilton - hamusic - hans-pcap - happlets-lib-gtk @@ -1888,20 +1939,18 @@ dont-distribute-packages: - happs-hsp-template - happs-tutorial - happstack-auth - - happstack-authenticate - happstack-contrib - happstack-data - happstack-dlg - happstack-facebook + - happstack-fastcgi - happstack-fay - happstack-fay-ajax - happstack-helpers - happstack-ixset - - happstack-jmacro - happstack-plugins - happstack-state - happstack-static-routing - - happstack-yui - happybara-webkit - haquil - harg @@ -1909,6 +1958,7 @@ dont-distribute-packages: - harmony - haroonga-httpd - has-th + - hasbolt-extras - hascat - hascat-lib - hascat-setup @@ -1919,11 +1969,15 @@ dont-distribute-packages: - hask-home - haskdeep - haskeem + - haskell-admin + - haskell-admin-health + - haskell-admin-managed-functions - haskell-aliyun - haskell-bitmex-client - haskell-docs - haskell-eigen-util - haskell-ftp + - haskell-lsp - haskell-lsp-client - haskell-pdf-presenter - haskell-platform-test @@ -1945,6 +1999,7 @@ dont-distribute-packages: - haskell-tools-refactor - haskell-tools-rewrite - haskell-tor + - haskell-xmpp - haskelldb-connect-hdbc - haskelldb-connect-hdbc-catchio-mtl - haskelldb-connect-hdbc-catchio-tf @@ -1969,12 +2024,9 @@ dont-distribute-packages: - hasklepias - haskoin-bitcoind - haskoin-crypto - - haskoin-node - haskoin-protocol - haskoin-script - haskoin-store - - haskoin-store-data - - haskoin-wallet - haskoon - haskoon-httpspec - haskoon-salvia @@ -1986,16 +2038,18 @@ dont-distribute-packages: - hasktorch-indef - hasktorch-signatures - hasktorch-zoo + - haskus-binary + - haskus-system-build + - haskus-utils - haskus-utils-compat - haskus-web - haslo - hasloGUI - - hasparql-client - hasql-cursor-query - hasql-postgres - hasql-postgres-options - hasql-streams-conduit - - hasql-streams-core + - hasql-streams-example - hasql-streams-pipes - hasql-streams-streaming - hasql-streams-streamly @@ -2010,6 +2064,7 @@ dont-distribute-packages: - hatexmpp3 - hawitter - haxl-amazonka + - haxl-facebook - haxy - hback - hbayes @@ -2028,7 +2083,9 @@ dont-distribute-packages: - hdbi-postgresql - hdbi-sqlite - hdbi-tests + - hdf - hdiff + - hdigest - hdirect - hdocs - hdph @@ -2042,11 +2099,11 @@ dont-distribute-packages: - hedgehog-checkers-lens - hedgehog-gen-json - hedis-pile - - heist-aeson - helic - helics - helics-wai - helium + - hell - hellage - hellnet - hemokit @@ -2061,12 +2118,14 @@ dont-distribute-packages: - hesh - hesql - heterolist + - hevm - hevolisa - hevolisa-dph - hexpat-conduit - hexpat-iteratee - hfd - hfiar + - hfoil - hfractal - hgalib - hgen @@ -2082,7 +2141,6 @@ dont-distribute-packages: - hinduce-classifier - hinduce-classifier-decisiontree - hinduce-examples - - hint-server - hinvaders - hinze-streams - hipbot @@ -2100,18 +2158,20 @@ dont-distribute-packages: - hjsonschema - hjugement-cli - hlcm - - hlrdb + - hledger-api - hls - - hly + - hls-exactprint-utils - hmark - hmatrix-backprop + - hmatrix-sundials - hmeap - hmeap-utils - hmep - - hmt + - hmm-lapack - hmt-diagrams - hnormalise - ho-rewriting + - hoauth2-demo - hoauth2-providers-tutorial - hob - hogre @@ -2130,63 +2190,76 @@ dont-distribute-packages: - hoodle-render - hoovie - hoppy-docs + - hoppy-runtime + - hoppy-std + - horizon-gen-nix + - horizon-spec - hotswap - - hout - hp2any-graph - hp2any-manager - hpaco - hpaco-lib - hpage - hpaste + - hpath-directory + - hpath-io - hpc-tracer - hplayground - hpqtypes-effectful - hpqtypes-extras + - hprotoc - hprotoc-fork - hps - hps-cairo - hpython + - hq + - hquantlib - hranker - hreq-client - hreq-conduit + - hriemann - hs - hs-blake2 - hs-ffmpeg - hs-gen-iface - - hs-ix - hs-pkpass - - hs-profunctors - hs-sdl-term-emulator - hs2dot + - hsaml2 - hsautogui - hsbackup - hsbencher-codespeed - hsbencher-fusion - hsc3-auditor + - hsc3-cairo - hsc3-data + - hsc3-db + - hsc3-dot - hsc3-forth - hsc3-graphs + - hsc3-lang - hsc3-lisp - hsc3-plot + - hsc3-process + - hsc3-rec - hsc3-server - hsc3-sf-hsndfile + - hsc3-unsafe - hsc3-utils - hscassandra - - hschema-aeson - - hschema-prettyprinter - - hschema-quickcheck - hscope - hsdev + - hsexif - hsfacter - hsinspect-lsp - hslogstash - hslua-module-zip - - hsnsq + - hsndfile-storablevector - hspec-expectations-pretty - hspec-pg-transact - hspec-setup - hspec-shouldbe - - hspec-webdriver + - hspecVariant - hsprocess - hsql-mysql - hsql-odbc @@ -2200,19 +2273,18 @@ dont-distribute-packages: - hstzaar - hsubconvert - hswip - - hsx-jmacro - hsx-xhtml + - hsyslog-tcp + - htar - html-kure - - html-parse-util - htoml-parse - - hts - htsn-import - http-client-auth - http-client-rustls + - http-encodings - http-enumerator - - http-pony - - http2-client-exe - http2-client-grpc + - http2-grpc-proto-lens - http2-grpc-proto3-wire - https-everywhere-rules - https-everywhere-rules-raw @@ -2221,7 +2293,6 @@ dont-distribute-packages: - hugs2yc - hulk - hunit-gui - - hunp - hunt-searchengine - hunt-server - hurdle @@ -2229,7 +2300,6 @@ dont-distribute-packages: - huzzy - hw-all - hw-aws-sqs-conduit - - hw-kafka-avro - hw-uri - hworker-ses - hwormhole @@ -2254,15 +2324,18 @@ dont-distribute-packages: - hyena - hylotab - hyloutils + - hyper-extra + - hyper-haskell-server - hyperpublic - iException + - ice40-prim + - iconv-typed - ide-backend - ide-backend-server - ideas-math - ideas-math-types - ideas-statistics - ige-mac-integration - - ihaskell-inline-r - ihaskell-rlangqq - ihttp - imap @@ -2284,11 +2357,14 @@ dont-distribute-packages: - indentation-parsec - indentation-trifecta - indexation + - indieweb-algorithms - indigo + - inferno-core + - inferno-lsp + - inferno-vc - infernu - infinity - inline-java - - inspection-proxy - inspector-wrecker - instant-aeson - instant-bytes @@ -2296,10 +2372,13 @@ dont-distribute-packages: - instant-hashable - instant-zipper - integreat + - intel-aes - interpolatedstring-qq - interpolatedstring-qq-mwotton + - intro-prelude - introduction-test - intset + - invertible-hlist - invertible-hxt - ion - ipatch @@ -2311,6 +2390,7 @@ dont-distribute-packages: - irc-fun-client - irc-fun-color - irc-fun-messages + - iridium - ironforge - isevaluated - ismtp @@ -2322,6 +2402,8 @@ dont-distribute-packages: - iteratee-parsec - iteratee-stm - iterio-server + - iterm-show-JuicyPixels + - iterm-show-diagrams - ival - ivor - ivory-avr-atmega328p-registers @@ -2338,8 +2420,7 @@ dont-distribute-packages: - ix - iyql - j2hs - - jacinda - - jail + - java-bridge - java-bridge-extras - java-character - java-reflect @@ -2347,12 +2428,11 @@ dont-distribute-packages: - javascript-extras - javasf - jespresso - - jmacro - - jmacro-rpc - jmacro-rpc-happstack - jmacro-rpc-snap - - jmonkey - join + - jot + - jsaddle-hello - jsc - jsmw - json-ast-json-encoder @@ -2368,12 +2448,12 @@ dont-distribute-packages: - json-tokens - json2-hdbc - json2sg - - jsonlogic-aeson - jsons-to-schema - jspath - jvm - jvm-batching - jvm-streaming + - kafka-client - kafka-device - kafka-device-glut - kafka-device-joystick @@ -2387,8 +2467,6 @@ dont-distribute-packages: - kansas-lava-shake - karakuri - katip-rollbar - - keenser - - keera-hails-i18n - keera-hails-mvc-environment-gtk - keera-hails-mvc-model-lightmodel - keera-hails-mvc-model-protectedmodel @@ -2405,8 +2483,12 @@ dont-distribute-packages: - keera-hails-reactivelenses - keera-posture - keid-resource-gltf + - kerry - kevin - key-vault + - keyed-vals-hspec-tests + - keyed-vals-mem + - keyed-vals-redis - keyring - keysafe - keyvaluehash @@ -2426,7 +2508,6 @@ dont-distribute-packages: - kubernetes-client - kure-your-boilerplate - kurita - - kvitable - laborantin-hs - labsat - labyrinth @@ -2446,14 +2527,12 @@ dont-distribute-packages: - lambdacube-examples - lambdacube-gl - lambdacube-samples - - lambdatwit - lambdaya-bus - lambdiff + - landlock - lang - language-Modula2 - - language-avro - language-boogie - - language-ecmascript-analysis - language-eiffel - language-kort - language-ninja @@ -2462,6 +2541,9 @@ dont-distribute-packages: - language-python-colour - language-qux - language-spelling + - lapack + - lapack-comfort-array + - lapack-hmatrix - lat - latex-formulae-hakyll - latex-formulae-pandoc @@ -2472,10 +2554,14 @@ dont-distribute-packages: - layouting - lazy-hash - lazy-hash-cache + - lda - ldap-scim-bridge - ldapply - leaky - lean + - learn-physics + - learn-physics-examples + - learning-hmm - legion - legion-discovery - legion-discovery-client @@ -2485,9 +2571,6 @@ dont-distribute-packages: - lens-accelerate - lens-toml-parser - lens-utils - - lenz - - lenz-mtl - - lenz-template - levmar-chart - lex-applicative - lgtk @@ -2500,6 +2583,7 @@ dont-distribute-packages: - liblawless - liblinear-enumerator - libmolude + - libpafe - libraft - librato - libxml-enumerator @@ -2509,14 +2593,19 @@ dont-distribute-packages: - lighttpd-conf - lighttpd-conf-qq - linear-accelerate + - linear-circuit - linear-code + - linearEqSolver - linearmap-category - linearscan-hoopl - linkchk - linkcore + - linnet-aeson + - linnet-conduit - linux-ptrace - lio-eci11 - lio-simple + - lion - liquid-base - liquid-bytestring - liquid-containers @@ -2550,20 +2639,22 @@ dont-distribute-packages: - llvm-tools - lmonad-yesod - lnd-client - - lnurl - lnurl-authenticator - local-search - localize - locked-poll - log + - log-effect-syslog + - log-effectful + - log-elasticsearch - log-postgres - log-utils - log4hs - logging-effect-extra - - logging-facade-journald - logic-classes - lojban - lojysamban + - lol - lol-apps - lol-benches - lol-cpp @@ -2571,19 +2662,17 @@ dont-distribute-packages: - lol-tests - lol-typing - loli + - longshot - loop-effin - looper - lorentz - lostcities - loup - - lp-diagrams-svg - lrucaching-haxl - ls-usb - lsystem - - ltext - luachunk - lucid-colonnade - - lucid2-htmx - lucienne - luhn - lui @@ -2600,6 +2689,7 @@ dont-distribute-packages: - macosx-make-standalone - magic-wormhole - magicbane + - magico - mahoro - maid - mailgun @@ -2630,10 +2720,10 @@ dont-distribute-packages: - markdown-pap - markdown2svg - markov-processes + - markup - marmalade-upload - marquise - marvin - - marxup - masakazu-bot - matchers - math-programming-glpk @@ -2641,12 +2731,15 @@ dont-distribute-packages: - mathblog - mathlink - matsuri + - matterhorn - maxent - maxent-learner-hw-gui - maxsharing - mcmc-samplers + - medea - mediabus-fdk-aac - mediabus-rtp + - melf - mellon-gpio - mellon-web - memcache-conduit @@ -2660,11 +2753,11 @@ dont-distribute-packages: - metronome - micro-gateway - microformats2-types + - midi-alsa - midimory + - midisurface - mighttpd - - migrant-hdbc - - migrant-postgresql-simple - - migrant-sqlite-simple + - mime-string - minecraft-data - minesweeper - mini-egison @@ -2672,24 +2765,19 @@ dont-distribute-packages: - minimung - minioperational - minirotate - - mirror-tweet - miss - miss-porcelain - missing-py2 - mixed-strategies - mkbndl - mlist - - mmsyn4 - mmsyn6ukr - - mmsyn6ukr-array - mmsyn7h - - mmsyn7l - mmsyn7s - mmsyn7ukr - - mmsyn7ukr-array - - mmsyn7ukr-common - mmtl-base - moan + - mockazo - modify-fasta - modsplit - modular-prelude-classy @@ -2697,36 +2785,26 @@ dont-distribute-packages: - modulo - mole - monad-exception + - monad-http - monad-metrics-extensible - monad-state - monad-stlike-stm - - monad-unlift-ref - monadiccp-gecode - - monadology - monarch - monetdb-mapi - mongrel2-handler - monky - monte-carlo - moo - - moo-nad - moonshine - morley - morley-client - morley-prelude - morley-upgradeable - - morpheus-graphql - - morpheus-graphql-app - - morpheus-graphql-cli - - morpheus-graphql-client - - morpheus-graphql-code-gen - - morpheus-graphql-code-gen-utils - - morpheus-graphql-server - - morpheus-graphql-subscriptions + - morloc - morphisms-functors-inventory - - mortred + - mosaico-lib - motor-diagrams - - motor-reflection - mp - mp3decoder - mpdmate @@ -2738,9 +2816,14 @@ dont-distribute-packages: - mptcp-pm - mptcpanalyzer - msgpack-aeson + - msgpack-arbitrary + - msgpack-binary - msgpack-idl + - msgpack-persist - msgpack-rpc - msgpack-rpc-conduit + - msgpack-testsuite + - msi-kb-backlit - mu-avro - mu-graphql - mu-grpc-client @@ -2761,11 +2844,14 @@ dont-distribute-packages: - multihash-serialise - multilinear-io - multiplicity + - multipool-persistent + - multipool-persistent-postgresql + - multipool-postgresql-simple - multirec-alt-deriver - multirec-binary - multisetrewrite + - multivariant - murder - - murmur - murmurhash3 - mushu - music-graphics @@ -2786,19 +2872,19 @@ dont-distribute-packages: - mxnet-examples - mxnet-nn - myTestlll + - mybitcoin-sci - mysnapsession-example - mysql-haskell - mysql-haskell-nem - mysql-haskell-openssl - mysql-simple-typed - - mywork + - mywatch - n2o-web - nakadi-client - named-servant-client - named-servant-server - nats-queue - natural-number - - neko-obfs - nemesis-titan - nerf - nero-wai @@ -2808,10 +2894,13 @@ dont-distribute-packages: - net-spider-pangraph - net-spider-rpl - net-spider-rpl-cli + - netcore + - netlib-comfort-array - netlines - netstring-enumerator - nettle-frp - nettle-netkit + - nettle-openflow - network-anonymous-i2p - network-anonymous-tor - network-connection @@ -2827,22 +2916,24 @@ dont-distribute-packages: - network-uri-json - network-websocket - neural + - neuron - newsletter-mailgun - newsynth - - ngrams-loader - ngx-export-tools-extra - nikepub - nirum - nix-thunk - nkjp - nlp-scores-scripts + - nom - nomyx-api - nomyx-core - nomyx-language - nomyx-library - nomyx-server - nonlinear-optimization-backprop - - notmuch-haskell + - not-gloss + - not-gloss-examples - notmuch-web - now-haskell - nri-env-parser @@ -2852,6 +2943,8 @@ dont-distribute-packages: - nri-postgresql - nri-redis - nri-test-encoding + - numerals-base + - numeric-ode - numerical - numhask-hedgehog - numhask-range @@ -2860,9 +2953,8 @@ dont-distribute-packages: - nyan-interpolation - nyan-interpolation-simple - nymphaea - - oanda-rest-api - oath - - obd + - oauth2-jwt-bearer - obdd - oberon0 - obj @@ -2874,35 +2966,42 @@ dont-distribute-packages: - oculus - odd-jobs - off-simple - - ohloh-hs + - ogma-cli + - ogma-core + - ogma-language-fret-cs + - ogma-language-fret-reqs - ois-input-manager - olwrapper + - om-fork + - om-http - om-kubernetes - om-legion + - om-logging + - om-socket - online - online-csv - opc-xml-da-client - open-adt-tutorial - - open-witness - - openai-hs - - openapi3-code-generator - opencv-extra + - openpgp - openpgp-Crypto - openpgp-crypto-api - openssh-github-keys + - opentelemetry-lightstep + - opentok - oplang - optima-for-hasql - optimal-blocks - optimusprime - optparse-enum + - orbits - orchid - orchid-demo - order-maintenance - - orgmode-parse - orgstat - osm-download - otp-authenticator - - overload + - outsort - package-o-tron - padKONTROL - pairing @@ -2918,6 +3017,7 @@ dont-distribute-packages: - papa-lens - papa-semigroupoids - paprika + - parallel-tree-search - parameterized - parco-attoparsec - parco-parsec @@ -2926,9 +3026,8 @@ dont-distribute-packages: - parse-help - parsestar - parsley + - parsley-core - parsley-garnish - - partial-lens - - partial-semigroup-test - passman-cli - patch-image - patterns @@ -2936,12 +3035,15 @@ dont-distribute-packages: - pcapng - pcf - pdf-slave + - pdfname + - pdfsplit - peakachu - pec - pell - penny - penny-bin - penny-lib + - penrose - peparser - perdure - perf-analysis @@ -2956,36 +3058,34 @@ dont-distribute-packages: - persistent-audit - persistent-hssqlppp - persistent-map - - persistent-mtl_0_5_0_0 + - persistent-mtl - persistent-mysql-haskell + - persistent-protobuf - persistent-relational-record - persona-idp - peyotls - peyotls-codec - pg-entity - - pgsql-simple - phonetic-languages-common - phonetic-languages-constraints - phonetic-languages-examples - phonetic-languages-general - phonetic-languages-permutations - - phonetic-languages-phonetics-basics - phonetic-languages-properties - phonetic-languages-simplified-common - - phonetic-languages-simplified-generalized-examples-array - - phonetic-languages-simplified-generalized-examples-common - - phonetic-languages-simplified-generalized-properties-array - phonetic-languages-simplified-lists-examples - phonetic-languages-simplified-properties-lists - phonetic-languages-simplified-properties-lists-double - phonetic-languages-ukrainian - phooey + - photoname - pianola - pier - ping - pinpon - pipe-enumerator - pipes-attoparsec-streaming + - pipes-bzip - pipes-cacophony - pipes-cereal-plus - pipes-conduit @@ -2996,16 +3096,15 @@ dont-distribute-packages: - pipes-illumina - pipes-key-value-csv - pipes-misc - - pipes-network-tls - pipes-p2p - pipes-p2p-examples - pisigma - pitchtrack - pkgtreediff - - pkgtreediff_0_6_0 - planet-mitchell - playlists-http - plocketed + - plow-log-async - plugins-auto - png-file - pngload @@ -3013,10 +3112,14 @@ dont-distribute-packages: - point-octree - pointless-lenses - pointless-rewrite - - poke + - poker - polh-lexicon - polydata + - polysemy-RandomFu - polysemy-http + - polysemy-log-co + - polysemy-methodology-composite + - polysemy-scoped-fs - polyseq - polytypeable-utils - pomodoro @@ -3025,16 +3128,16 @@ dont-distribute-packages: - porcupine-core - porcupine-http - porcupine-s3 - - portray-diff-hunit - - portray-diff-quickcheck - ports - poseidon - poseidon-postgis + - postgresql-common-persistent - postgresql-pure - postgresql-simple-ltree - postgresql-simple-queue - postgresql-simple-typed - postgresql-tx-query + - postgresql-tx-squeal - postgresql-tx-squeal-compat-simple - postmark - potoki @@ -3053,26 +3156,23 @@ dont-distribute-packages: - presto-hdbc - preview - primal-memory + - primitive-containers - primula-board - primula-bot - proc - process-iterio - process-progress - process-qq - - process-sequential - process-streaming - procrastinating-structure - producer - product - prof2dot - progressbar - - project-forge - - project-m36 - prolog-graph - prolog-graph-lib - prologue - prolude - - prometheus-effect - propane - proplang - prosidyc @@ -3080,12 +3180,14 @@ dont-distribute-packages: - proto3-suite - proto3-wire - protobuf-native + - protocol-buffers-descriptor - protocol-buffers-descriptor-fork - proton - psql - ptera - ptera-core - ptera-th + - pubsub - puffytools - pugs-compat - pugs-hsregex @@ -3096,7 +3198,6 @@ dont-distribute-packages: - purescript-iso - pursuit-client - push-notify - - push-notify-apn - push-notify-ccs - push-notify-general - puzzle-draw-cmdline @@ -3104,25 +3205,27 @@ dont-distribute-packages: - qd-vec - qhs - qhull + - qnap-decrypt - qr-repa + - qtah-cpp-qt5 - qtah-examples + - qtah-generator - qtah-qt5 + - quantfin - quantum-random + - qudb - queryparser - queryparser-demo - queryparser-hive - queryparser-presto - queryparser-vertica - - queue-sheet - queuelike - - quickbooks - - quickcheck-combinators + - quickbench - quickcheck-poly - quickcheck-regex - quickcheck-relaxng - quickcheck-state-machine - quickcheck-state-machine-distributed - - quickcheck-webdriver - quicktest - quipper - quipper-algorithms @@ -3150,12 +3253,13 @@ dont-distribute-packages: - rainbow-tests - raketka - rallod + - randfile - random-access-file - random-class - random-effin + - random-extras - random-hypergeometric - range-space - - ranged-list - rasa - rasa-example-config - rasa-ext-bufs @@ -3194,14 +3298,18 @@ dont-distribute-packages: - record-preprocessor - record-syntax - records-th + - recursion-schemes-ix - redHandlers - reddit + - redis-io + - rediscaching-haxl - reduce-equations - refh - reflex-animation - reflex-backend-wai - reflex-dom-colonnade - reflex-dynamic-containers + - reflex-gadt-api - reflex-ghci - reflex-gloss-scene - reflex-localize @@ -3209,7 +3317,6 @@ dont-distribute-packages: - reflex-monad-auth - reflex-process - refractor - - refurb - reg-alloc-graph-color - regex-deriv - regex-genex @@ -3223,10 +3330,14 @@ dont-distribute-packages: - regions-monadstf - regions-mtl - registry-aeson + - registry-aeson_0_3_0_0 - registry-hedgehog - registry-hedgehog-aeson + - registry-hedgehog-aeson_0_3_0_0 + - registry-hedgehog_0_8_0_0 - registry-messagepack - registry-options + - registry-options_0_2_0_0 - regular-extras - regular-web - regular-xmlpickler @@ -3252,8 +3363,9 @@ dont-distribute-packages: - replicant - repr - representable-tries + - reserve - resin - - resource-pool-catchio + - resistor-cube - resource-simple - rest-client - rest-core @@ -3267,6 +3379,9 @@ dont-distribute-packages: - restful-snap - restricted-workers - rethinkdb-model + - rethinkdb-wereHamster + - retroclash-lib + - retroclash-sim - rewrite - rewriting - rezoom @@ -3275,7 +3390,9 @@ dont-distribute-packages: - rfc-psql - rfc-redis - rfc-servant + - rhine-gloss - rhythm-game-tutorial + - rib - ribosome - ribosome-app - ribosome-host @@ -3283,7 +3400,6 @@ dont-distribute-packages: - ribosome-root - ribosome-test - ridley-extras - - rio-process-pool - riot - ripple - ripple-federation @@ -3321,7 +3437,6 @@ dont-distribute-packages: - ruler - ruler-core - runtime-arbitrary - - runtime-instances - rv - s-expression - safe-coloured-text-gen @@ -3334,6 +3449,8 @@ dont-distribute-packages: - safer-file-handles-text - sai-shape-syb - sak + - salak-toml + - salak-yaml - saltine-quickcheck - salvia - salvia-demo @@ -3344,7 +3461,6 @@ dont-distribute-packages: - samtools-conduit - samtools-enumerator - samtools-iteratee - - sandwich-webdriver - sarsi - sasl - sat-micro-hs @@ -3352,6 +3468,7 @@ dont-distribute-packages: - satchmo-funsat - satchmo-toysat - sauron + - sbvPlugin - sc2-lowlevel - sc2-support - sc2hs @@ -3361,7 +3478,7 @@ dont-distribute-packages: - scalpel-search - scan-metadata - scan-vector-machine - - schedevr + - scgi - scheduling - schematic - scholdoc @@ -3373,16 +3490,25 @@ dont-distribute-packages: - scope-cairo - scotty-fay - scotty-hastache + - scotty-haxl - scp-streams - scrabble-bot - scrapbook - scroll + - sdp-binary + - sdp-deepseq + - sdp-hashable + - sdp-io + - sdp-quickcheck + - sdp4bytestring + - sdp4text + - sdp4unordered + - sdp4vector - seakale-postgresql - seakale-tests - secrm - sednaDBXML - seitz-symbol - - selda-postgresql - selenium-server - self-extract - semantic-source @@ -3391,7 +3517,6 @@ dont-distribute-packages: - semiring-num - sensenet - sentence-jp - - seonbi - seqaid - seqloc - seqloc-datafiles @@ -3411,11 +3536,8 @@ dont-distribute-packages: - servant-db-postgresql - servant-ede - servant-ekg - - servant-event-stream - servant-examples - - servant-http2-client - - servant-jquery - - servant-js + - servant-haxl-client - servant-matrix-param - servant-oauth2 - servant-oauth2-examples @@ -3428,9 +3550,9 @@ dont-distribute-packages: - servant-streaming-client - servant-streaming-docs - servant-streaming-server + - servant-streamly - servant-swagger-tags - servant-to-elm - - servant-util-beam-pg - servant-waargonaut - servant-zeppelin-client - servant-zeppelin-server @@ -3440,15 +3562,15 @@ dont-distribute-packages: - sgf - sgrep - sha1 + - shady-gen - shady-graphics - - shake-ats - shake-bindist - shake-minify-css + - shake-pack - shakebook - shaker - shapefile - shapely-data - - shapes-demo - sheets - shelduck - shellmate-extras @@ -3462,19 +3584,22 @@ dont-distribute-packages: - sigma-ij - signals - signature + - signify-hs - silvi - simgi - simple - simple-c-value - simple-firewire - simple-log-syslog - - simple-logging - simple-nix - simple-pascal - simple-postgresql-orm - simple-session - simpleirc-lens - simseq + - singleton-nats + - singletons-presburger + - singletons-presburger_0_7_1_0 - siphon - siren-json - sirkel @@ -3483,30 +3608,32 @@ dont-distribute-packages: - skeletons - sketch-frp-copilot - skylark-client - - skylighting_0_13_1_1 - slate - - slidemews - slip32 - smallcheck-laws - smallcheck-lens - smallstring - smartword + - smash-aeson + - smash-lens + - smash-microlens + - smash-optics - smcdel - smith-cli - smith-client - smt + - smtlib-backends-process + - smtlib-backends-tests + - smtlib-backends-z3 - smtlib2-debug - smtlib2-pipe - smtlib2-quickcheck - smtlib2-timing - smtp2mta - - snap-auth-cli + - snap-blaze-clay - snap-elm - snap-extras - - snap-utils - snaplet-actionlog - - snaplet-auth-acid - - snaplet-coffee - snaplet-customauth - snaplet-fay - snaplet-hasql @@ -3514,19 +3641,19 @@ dont-distribute-packages: - snaplet-hdbc - snaplet-lss - snaplet-mongoDB - - snaplet-mysql-simple - snaplet-oauth - snaplet-postmark - - snaplet-recaptcha - snaplet-redson - snaplet-rest - snaplet-riak - snaplet-sedna - - snaplet-sqlite-simple-jwt-auth - snaplet-stripe - snaplet-tasks - snaplet-wordpress + - snappy-conduit + - snappy-framing - snappy-iteratee + - snappy-lazy - sndfile-enumerators - sneakyterm - sneathlane-haste @@ -3535,22 +3662,27 @@ dont-distribute-packages: - snow-white - snowflake-core - snowflake-server + - soap + - soap-openssl + - soap-tls - sock2stream - socket-io - sockets - - solana-staking-csvs + - socketson - solga-swagger - solr + - sonic-visualiser - souffle-dsl - - sounddelay - - soundgen + - sound-collage - source-code-server - - spade + - soxlib - sparkle - sparrow - sparsebit - sparser + - spartacon - spata + - spatial-math - specialize-th - spectral-clustering - speculation-transformers @@ -3560,19 +3692,28 @@ dont-distribute-packages: - sphinx-cli - spice - spike + - splines + - split-record - sprinkles + - sproxy + - sproxy-web + - sproxy2 - sql-simple-mysql - sql-simple-pool - sql-simple-postgresql - sql-simple-sqlite - - sqlite-easy - sqlite-simple-typed - sqsd-local + - squeal-postgresql + - squeal-postgresql-ltree + - squeal-postgresql-uuid-ossp + - sr-extra - sscgi - sshd-lint - sssp - sstable - stable-tree + - stack-hpc-coveralls - stack-network - stack-run-auto - stackage @@ -3592,20 +3733,26 @@ dont-distribute-packages: - statsd-client - statsdi - stern-brocot + - stm-supply - stmcontrol + - storablevector-carray - storablevector-streamfusion - stratum-tool - stratux - stratux-demo - stratux-http - stratux-websockets + - streamed - streaming-fft - streaming-process + - streamly-posix - strelka + - strelka-wai + - strict-containers-lens + - strict-containers-serialise - strict-data - string-typelits - stripe-haskell - - stripe-hs - stripe-http-client - stripe-http-streams - stripe-tests @@ -3622,14 +3769,12 @@ dont-distribute-packages: - sugar-json - sugar-scheme - summoner-tui - - sump - sunroof-examples - sunroof-server - supercollider-ht - supercollider-midi - superconstraints - supernova - - supply-chain - sv - sv-cassava - sv-svfactor @@ -3638,7 +3783,6 @@ dont-distribute-packages: - swapper - sweet-egison - switch - - sydtest - sydtest-aeson - sydtest-amqp - sydtest-autodocodec @@ -3674,15 +3818,23 @@ dont-distribute-packages: - syntax-pretty - syntax-printer - syntaxnet-haskell + - synthesizer + - synthesizer-alsa + - synthesizer-core + - synthesizer-dimensional + - synthesizer-filter - synthesizer-llvm + - synthesizer-midi - sys-process - systemstats - t3-client - ta + - tableaux - tag-stream - tagged-list - tagged-th - tagsoup-navigate + - tagstew - tak-ai - tal - talash @@ -3694,33 +3846,35 @@ dont-distribute-packages: - task - task-distribution - tasty-bdd + - tasty-checklist - tasty-groundhog-converters - tasty-integrate - tasty-jenkins-xml - tasty-laws - tasty-lens - - tasty-sugar - tateti-tateti - tbox + - tcache-AWS - tccli - - tdd-util - tdlib - tdlib-gen - tdlib-types - - telega + - techlab - telegram-bot - telegram-raw-api + - temporal-csound - ten-lens - ten-unordered-containers - tensorflow-core-ops - tensorflow-logging - tensorflow-ops + - tensorflow-records + - tensorflow-records-conduit - terminal-text - terrahs - test-sandbox-compose - test-simple - testbench - - text-builder-dev_0_3_3 - text-json-qq - text-locale-encoding - text-plus @@ -3730,13 +3884,14 @@ dont-distribute-packages: - th-context - th-instances - th-typegraph - - theatre - theoremquest-client - thimk + - threaded + - threepenny-gui-flexbox - thumbnail-polish - tic-tac-toe - tickle - - tidal-serial + - tiger - tighttp - timberc - time-exts @@ -3747,7 +3902,7 @@ dont-distribute-packages: - timeseries - timezone-unix - tinkoff-invest-sdk - - tinyMesh + - tintin - tip-haskell-frontend - tip-lib - titan @@ -3773,7 +3928,6 @@ dont-distribute-packages: - too-many-cells - top - topaz - - topkata - total-map - toxcore - toxcore-c @@ -3803,15 +3957,15 @@ dont-distribute-packages: - trek-app - trek-db - triangulation - - tries - trimpolya - - truelevel - trurl - tsession-happstack - tsweb - tuntap-simple - tup-functor + - tuple-append-instances - tuple-ops + - turingMachine - tweet-hs - twentefp-eventloop-graphics - twentefp-eventloop-trees @@ -3819,13 +3973,10 @@ dont-distribute-packages: - twentefp-rosetree - twentefp-trees - twentyseven - - twhs - twidge - twilight-stm - twill - - twitter-conduit - twitter-enumerator - - twitter-types-lens - txt - type-assertions - type-cache @@ -3840,9 +3991,10 @@ dont-distribute-packages: - type-sub-th - typed-admin - typed-encoding-encoding + - typed-spreadsheet - typed-streams + - typedflow - typelevel - - typelevel-rewrite-rules - typescript-docs - typson-beam - typson-esqueleto @@ -3856,9 +4008,8 @@ dont-distribute-packages: - uhc-util - ukrainian-phonetics-basic - unagi-bloomfilter - - unbeliever - unbound - - unfoldable-restricted + - unbounded-delays-units - uni-events - uni-graphs - uni-htk @@ -3872,6 +4023,9 @@ dont-distribute-packages: - uniqueness-periods-vector-filters - uniqueness-periods-vector-general - uniqueness-periods-vector-properties + - units + - units-attoparsec + - units-defs - universal - universe - universe-dependent-sum @@ -3888,6 +4042,7 @@ dont-distribute-packages: - urembed - uri-enumerator - uri-enumerator-file + - urlpath - usb - usb-enumerator - usb-hid @@ -3903,6 +4058,7 @@ dont-distribute-packages: - uu-cco-hut-parsing - uu-cco-uu-parsinglib - uu-options + - uuagc - uuid-crypto - uvector-algorithms - v4l2 @@ -3916,20 +4072,27 @@ dont-distribute-packages: - variable-precision - vault-tool-server - vault-trans + - vaultaire-common - vcache-trie - vcard - vcsgui - vect-floating-accelerate - vector-instances-collections - vector-text + - vectortiles - venzone - verdict-json - verifiable-expressions + - verismith + - versioning-servant - vessel - vflow-types + - vformat-aeson + - vformat-time - vfr-waypoints - vigilance - vimeta + - vinyl-generics - vinyl-operational - vision - visual-graphrewrite @@ -3938,25 +4101,34 @@ dont-distribute-packages: - vocoder-conduit - vocoder-dunai - voicebase + - vorbiscomment - vpq - vty-ui-extras - waargonaut - wahsp - wai-devel - wai-dispatch + - wai-frontend-monadcgi - wai-handler-snap - wai-hastache + - wai-log - wai-middleware-brotli - wai-middleware-cache - wai-middleware-cache-redis - wai-middleware-consul + - wai-middleware-content-type - wai-middleware-rollbar - wai-middleware-route - wai-middleware-throttle + - wai-middleware-verbs + - wai-route - wai-routing + - wai-session-alt - wai-session-tokyocabinet - wai-thrift + - wai-transformers - waldo + - warp-grpc - warped - wavesurfer - wavy @@ -3964,6 +4136,7 @@ dont-distribute-packages: - web-inv-route - web-mongrel2 - web-page + - web-rep - web-routes-regular - web-routing - web3 @@ -3973,10 +4146,14 @@ dont-distribute-packages: - web3-polkadot - web3-provider - web3-solidity + - webcloud - webcrank-wai - - webdriver-angular - webdriver-w3c + - webify - webserver + - websockets-rpc + - websockets-simple + - websockets-simple-extra - weighted - werewolf-slack - wgpu-hs @@ -3985,8 +4162,10 @@ dont-distribute-packages: - wheb-redis - wheb-strapped - whitespace + - wholepixels - wikipedia4epub - winio + - wire-streams - wl-pprint-ansiterm - wl-pprint-terminfo - wlc-hs @@ -4001,8 +4180,10 @@ dont-distribute-packages: - wrecker-ui - wright - writer-cps-full + - wsjtx-udp - wtk-gtk - wu-wei + - wuerfelschlange - wumpus-basic - wumpus-drawing - wumpus-microprint @@ -4039,6 +4220,8 @@ dont-distribute-packages: - xournal-convert - xournal-parser - xournal-render + - xournal-types + - xrefcheck - xtc - yajl-enumerator - yam @@ -4054,13 +4237,13 @@ dont-distribute-packages: - yaml-rpc-scotty - yaml-rpc-snap - yarr-image-io + - yasi - yavie - ycextra - yeamer - yeshql - yesod-articles - yesod-auth-ldap - - yesod-auth-lti13 - yesod-colonnade - yesod-continuations - yesod-examples @@ -4077,7 +4260,9 @@ dont-distribute-packages: - yesod-worker - yi - yi-contrib + - yi-core - yi-dynamic-configuration + - yi-emacs-colours - yi-frontend-pango - yi-frontend-vty - yi-fuzzy-open @@ -4101,8 +4286,8 @@ dont-distribute-packages: - yuuko - zasni-gerna - zephyr-copilot + - zerobin - zeromq3-conduit - - zeromq3-haskell - zeroth - zifter-cabal - zifter-git @@ -4114,6 +4299,7 @@ dont-distribute-packages: - zippo - ziptastic-client - zlib-enum + - zm - zmcat - zoom-cache - zoom-cache-pcm diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index 3815c91edf2c7..ff1d115f64079 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -91,10 +91,6 @@ self: super: builtins.intersectAttrs super { ''; }) super.jni; - # The package doesn't know about the AL include hierarchy. - # https://github.com/phaazon/al/issues/1 - al = appendConfigureFlag "--extra-include-dirs=${pkgs.openal}/include/AL" super.al; - # Won't find it's header files without help. sfml-audio = appendConfigureFlag "--extra-include-dirs=${pkgs.openal}/include/AL" super.sfml-audio; @@ -119,29 +115,13 @@ self: super: builtins.intersectAttrs super { ]; }) super.arbtt; - hzk = overrideCabal (drv: { - preConfigure = "sed -i -e /include-dirs/d hzk.cabal"; - configureFlags = [ "--extra-include-dirs=${pkgs.zookeeper_mt}/include/zookeeper" ]; - }) super.hzk; - - haskakafka = overrideCabal (drv: { - preConfigure = "sed -i -e /extra-lib-dirs/d -e /include-dirs/d haskakafka.cabal"; - configureFlags = [ "--extra-include-dirs=${pkgs.rdkafka}/include/librdkafka" ]; - }) super.haskakafka; - - # library has hard coded directories that need to be removed. Reported upstream here https://github.com/haskell-works/hw-kafka-client/issues/32 - hw-kafka-client = dontCheck (overrideCabal (drv: { - preConfigure = "sed -i -e /extra-lib-dirs/d -e /include-dirs/d -e /librdkafka/d hw-kafka-client.cabal"; - configureFlags = [ "--extra-include-dirs=${pkgs.rdkafka}/include/librdkafka" ]; - }) super.hw-kafka-client); + hzk = appendConfigureFlag "--extra-include-dirs=${pkgs.zookeeper_mt}/include/zookeeper" super.hzk; # Foreign dependency name clashes with another Haskell package. libarchive-conduit = super.libarchive-conduit.override { archive = pkgs.libarchive; }; # Heist's test suite requires system pandoc - heist = overrideCabal (drv: { - testToolDepends = [pkgs.pandoc]; - }) super.heist; + heist = addTestToolDepend pkgs.pandoc super.heist; # https://github.com/NixOS/cabal2nix/issues/136 and https://github.com/NixOS/cabal2nix/issues/216 gio = disableHardening ["fortify"] (addPkgconfigDepend pkgs.glib (addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.gio)); @@ -326,30 +306,16 @@ self: super: builtins.intersectAttrs super { greenclip = addExtraLibrary pkgs.xorg.libXdmcp super.greenclip; # The cabal files for these libraries do not list the required system dependencies. - libjwt-typed = overrideCabal (drv: { - librarySystemDepends = [ pkgs.libjwt ]; - }) super.libjwt-typed; - miniball = overrideCabal (drv: { - librarySystemDepends = [ pkgs.miniball ]; - }) super.miniball; - SDL-image = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_image ] ++ drv.librarySystemDepends or []; - }) super.SDL-image; - SDL-ttf = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_ttf ]; - }) super.SDL-ttf; - SDL-mixer = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_mixer ]; - }) super.SDL-mixer; - SDL-gfx = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_gfx ]; - }) super.SDL-gfx; - SDL-mpeg = overrideCabal (drv: { - configureFlags = (drv.configureFlags or []) ++ [ - "--extra-lib-dirs=${pkgs.smpeg}/lib" - "--extra-include-dirs=${pkgs.smpeg}/include/smpeg" - ]; - }) super.SDL-mpeg; + libjwt-typed = addExtraLibrary pkgs.libjwt super.libjwt-typed; + miniball = addExtraLibrary pkgs.miniball super.miniball; + SDL-image = addExtraLibrary pkgs.SDL super.SDL-image; + SDL-ttf = addExtraLibrary pkgs.SDL super.SDL-ttf; + SDL-mixer = addExtraLibrary pkgs.SDL super.SDL-mixer; + SDL-gfx = addExtraLibrary pkgs.SDL super.SDL-gfx; + SDL-mpeg = appendConfigureFlags [ + "--extra-lib-dirs=${pkgs.smpeg}/lib" + "--extra-include-dirs=${pkgs.smpeg.dev}/include/smpeg" + ] super.SDL-mpeg; # https://github.com/ivanperez-keera/hcwiid/pull/4 hcwiid = overrideCabal (drv: { @@ -383,9 +349,7 @@ self: super: builtins.intersectAttrs super { }) super.fltkhs; # https://github.com/skogsbaer/hscurses/pull/26 - hscurses = overrideCabal (drv: { - librarySystemDepends = (drv.librarySystemDepends or []) ++ [ pkgs.ncurses ]; - }) super.hscurses; + hscurses = addExtraLibrary pkgs.ncurses super.hscurses; # Looks like Avahi provides the missing library dnssd = super.dnssd.override { dns_sd = pkgs.avahi.override { withLibdnssdCompat = true; }; }; @@ -395,6 +359,13 @@ self: super: builtins.intersectAttrs super { preCheck = ''export PATH="$PWD/dist/build/ghcide:$PATH"''; }) super.ghcide; + tasty-discover = overrideCabal (drv: { + # Depends on itself for testing + preBuild = '' + export PATH="$PWD/dist/build/tasty-discover:$PATH" + '' + (drv.preBuild or ""); + }) super.tasty-discover; + # GLUT uses `dlopen` to link to freeglut, so we need to set the RUNPATH correctly for # it to find `libglut.so` from the nix store. We do this by patching GLUT.cabal to pkg-config # depend on freeglut, which provides GHC to necessary information to generate a correct RPATH. @@ -407,9 +378,7 @@ self: super: builtins.intersectAttrs super { # so disable this on Darwin only ${if pkgs.stdenv.isDarwin then null else "GLUT"} = addPkgconfigDepend pkgs.freeglut (appendPatch ./patches/GLUT.patch super.GLUT); - libsystemd-journal = overrideCabal (old: { - librarySystemDepends = old.librarySystemDepends or [] ++ [ pkgs.systemd ]; - }) super.libsystemd-journal; + libsystemd-journal = doJailbreak (addExtraLibrary pkgs.systemd super.libsystemd-journal); # does not specify tests in cabal file, instead has custom runTest cabal hook, # so cabal2nix will not detect test dependencies. @@ -529,11 +498,11 @@ self: super: builtins.intersectAttrs super { sed -i -e 's|"bitwuzla"|"${pkgs.bitwuzla}/bin/bitwuzla"|' Data/SBV/Provers/Bitwuzla.hs sed -i -e 's|"boolector"|"${pkgs.boolector}/bin/boolector"|' Data/SBV/Provers/Boolector.hs sed -i -e 's|"cvc4"|"${pkgs.cvc4}/bin/cvc4"|' Data/SBV/Provers/CVC4.hs + sed -i -e 's|"cvc5"|"${pkgs.cvc5}/bin/cvc5"|' Data/SBV/Provers/CVC5.hs sed -i -e 's|"yices-smt2"|"${pkgs.yices}/bin/yices-smt2"|' Data/SBV/Provers/Yices.hs sed -i -e 's|"z3"|"${pkgs.z3}/bin/z3"|' Data/SBV/Provers/Z3.hs # Solvers we don't provide are removed from tests - sed -i -e 's|, cvc5||' SBVTestSuite/SBVConnectionTest.hs sed -i -e 's|, mathSAT||' SBVTestSuite/SBVConnectionTest.hs sed -i -e 's|, dReal||' SBVTestSuite/SBVConnectionTest.hs ''; @@ -668,7 +637,9 @@ self: super: builtins.intersectAttrs super { # Tests require network access. spagoWithoutChecks = dontCheck spagoOldAeson; in - spagoWithoutChecks; + # spago doesn't currently build with ghc92. Top-level spago is pulled from + # ghc90 and explicitly marked unbroken. + markBroken spagoWithoutChecks; # checks SQL statements at compile time, and so requires a running PostgreSQL # database to run it's test suite @@ -703,21 +674,6 @@ self: super: builtins.intersectAttrs super { aeson-gadt-th = disableCabalFlag "build-readme" (doJailbreak super.aeson-gadt-th); - neuron = overrideCabal (drv: { - # neuron expects the neuron-search script to be in PATH at built-time. - buildTools = [ pkgs.buildPackages.makeWrapper ]; - preConfigure = '' - mkdir -p $out/bin - cp src-bash/neuron-search $out/bin/neuron-search - chmod +x $out/bin/neuron-search - wrapProgram $out/bin/neuron-search --prefix 'PATH' ':' ${ - with pkgs; - lib.makeBinPath [ fzf ripgrep gawk bat findutils envsubst ] - } - PATH=$PATH:$out/bin - ''; - }) super.neuron; - # Fix compilation of Setup.hs by removing the module declaration. # See: https://github.com/tippenein/guid/issues/1 guid = overrideCabal (drv: { @@ -734,13 +690,9 @@ self: super: builtins.intersectAttrs super { postgresql-libpq-notify = dontCheck super.postgresql-libpq-notify; postgresql-pure = dontCheck super.postgresql-pure; - retrie = overrideCabal (drv: { - testToolDepends = [ pkgs.git pkgs.mercurial ] ++ drv.testToolDepends or []; - }) super.retrie; - - retrie_1_2_0_0 = overrideCabal (drv: { - testToolDepends = [ pkgs.git pkgs.mercurial ] ++ drv.testToolDepends or []; - }) super.retrie_1_2_0_0; + retrie = addTestToolDepends [pkgs.git pkgs.mercurial] super.retrie; + retrie_1_2_0_0 = addTestToolDepends [pkgs.git pkgs.mercurial] super.retrie_1_2_0_0; + retrie_1_2_1_1 = addTestToolDepends [pkgs.git pkgs.mercurial] super.retrie_1_2_1_1; haskell-language-server = let # This wrapper will be included in the sdist in the next release, then we can remove this custom fetch. @@ -907,32 +859,7 @@ self: super: builtins.intersectAttrs super { (overrideCabal { doCheck = pkgs.postgresql.doCheck; }) ]; - cachix = overrideCabal (drv: { - version = "1.1"; - src = pkgs.fetchFromGitHub { - owner = "cachix"; - repo = "cachix"; - rev = "v1.1"; - sha256 = "sha256-lML+E5RR5Pk2Do85+8Qs7mMVqp7ImlCIqEYjUAS08W4="; - }; - buildDepends = [ self.conduit-zstd ]; - postUnpack = "sourceRoot=$sourceRoot/cachix"; - postPatch = '' - sed -i 's/1.0.1/1.1/' cachix.cabal - ''; - }) (super.cachix.override { nix = pkgs.nixVersions.nix_2_9; }); - cachix-api = overrideCabal (drv: { - version = "1.1"; - src = pkgs.fetchFromGitHub { - owner = "cachix"; - repo = "cachix"; - rev = "v1.1"; - sha256 = "sha256-lML+E5RR5Pk2Do85+8Qs7mMVqp7ImlCIqEYjUAS08W4="; - }; - buildDepends = [ self.stm-chans ]; - postUnpack = "sourceRoot=$sourceRoot/cachix-api"; - }) super.cachix-api; - + cachix = super.cachix.override { nix = pkgs.nixVersions.nix_2_9; }; hercules-ci-agent = super.hercules-ci-agent.override { nix = pkgs.nixVersions.nix_2_9; }; hercules-ci-cnix-expr = @@ -1014,11 +941,11 @@ self: super: builtins.intersectAttrs super { }) super.procex; # Test suite wants to run main executable - fourmolu_0_9_0_0 = overrideCabal (drv: { + fourmolu = overrideCabal (drv: { preCheck = drv.preCheck or "" + '' export PATH="$PWD/dist/build/fourmolu:$PATH" ''; - }) super.fourmolu_0_9_0_0; + }) super.fourmolu; # Test suite needs to execute 'disco' binary disco = overrideCabal (drv: { @@ -1084,12 +1011,11 @@ self: super: builtins.intersectAttrs super { # Tests assume dist-newstyle build directory is present cabal-hoogle = dontCheck super.cabal-hoogle; - nfc = overrideCabal (drv: { - isExecutable = true; - executableHaskellDepends = with self; drv.executableHaskellDepends or [] ++ [ base base16-bytestring bytestring ]; - configureFlags = drv.configureFlags or [] ++ [ "-fbuild-examples" ]; - enableSeparateBinOutput = true; - }) super.nfc; + nfc = lib.pipe super.nfc [ + enableSeparateBinOutput + (addBuildDepend self.base16-bytestring) + (appendConfigureFlag "-fbuild-examples") + ]; # Wants to execute cabal-install to (re-)build itself hint = dontCheck super.hint; @@ -1161,7 +1087,6 @@ self: super: builtins.intersectAttrs super { hls-floskell-plugin hls-fourmolu-plugin hls-module-name-plugin - hls-pragmas-plugin hls-splice-plugin hls-refactor-plugin hls-code-range-plugin @@ -1172,6 +1097,7 @@ self: super: builtins.intersectAttrs super { # Flaky tests hls-hlint-plugin = dontCheck super.hls-hlint-plugin; + hls-pragmas-plugin = dontCheck super.hls-pragmas-plugin; hls-class-plugin = dontCheck super.hls-class-plugin; hls-rename-plugin = dontCheck super.hls-rename-plugin; hls-alternate-number-format-plugin = dontCheck super.hls-alternate-number-format-plugin; diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index b32900944af06..c3614d35ed864 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -1,4 +1,4 @@ -/* hackage-packages.nix is an auto-generated file -- DO NOT EDIT! */ +/* hackage-packages.nix is auto-generated by hackage2nix -- DO NOT EDIT MANUALLY! */ { pkgs, lib, callPackage }: @@ -312,7 +312,6 @@ self: { description = "Efficient, high-level dynamic programming"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ADPfusionForest" = callPackage @@ -1334,6 +1333,34 @@ self: { mainProgram = "bnfc"; }) {}; + "BNFC_2_9_4_1" = callPackage + ({ mkDerivation, alex, array, base, containers, deepseq, directory + , filepath, happy, hspec, hspec-discover, HUnit, mtl, pretty + , process, QuickCheck, string-qq, temporary, time, transformers + }: + mkDerivation { + pname = "BNFC"; + version = "2.9.4.1"; + sha256 = "0l3jw86b14jfrd4phjkhpl9qq8im3lnbbhhadmivdr1k2sf614sy"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + array base containers deepseq directory filepath mtl pretty process + string-qq time transformers + ]; + libraryToolDepends = [ alex happy ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + array base containers deepseq directory filepath hspec HUnit mtl + pretty process QuickCheck string-qq temporary time + ]; + testToolDepends = [ alex happy hspec-discover ]; + description = "A compiler front-end generator"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "bnfc"; + }) {}; + "BNFC-meta" = callPackage ({ mkDerivation, alex-meta, array, base, fail, happy-meta , haskell-src-meta, syb, template-haskell @@ -1644,7 +1671,6 @@ self: { description = "BLAST-related tools"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "BiobaseDotP" = callPackage @@ -1679,6 +1705,7 @@ self: { ]; description = "European Nucleotide Archive data"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "BiobaseEnsembl" = callPackage @@ -1743,6 +1770,7 @@ self: { ]; description = "streaming FASTA parser"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "fastaextract"; }) {}; @@ -1904,7 +1932,6 @@ self: { description = "Import Turner RNA parameters"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "BiobaseTypes" = callPackage @@ -1938,6 +1965,7 @@ self: { ]; description = "Collection of types for bioinformatics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "BiobaseVienna" = callPackage @@ -1995,6 +2023,7 @@ self: { ]; description = "Efficient RNA/DNA/Protein Primary/Secondary Structure"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "SubOptDistance"; }) {}; @@ -2069,8 +2098,8 @@ self: { }: mkDerivation { pname = "Blammo"; - version = "1.1.1.0"; - sha256 = "1hqrdzj30lwwb7zis2hkfz887jh107k33mbqkj2hxvd56sc4din5"; + version = "1.1.1.1"; + sha256 = "1qms459jmikx2dxsl6znn8scb6293s4zprz419da5s71lkiql7cp"; libraryHaskellDepends = [ aeson base bytestring case-insensitive clock containers dlist envparse exceptions fast-logger http-types lens monad-logger-aeson @@ -2083,8 +2112,6 @@ self: { testToolDepends = [ markdown-unlit ]; description = "Batteries-included Structured Logging library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "BlastHTTP" = callPackage @@ -2150,7 +2177,9 @@ self: { executableHaskellDepends = [ base cmdargs ]; description = "A tool for posting Haskelly articles to blogs"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "BlogLiterately"; + broken = true; }) {}; "BlogLiterately-diagrams" = callPackage @@ -2629,7 +2658,6 @@ self: { description = "Firing rules semantic of CSPM"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "CSPM-Frontend" = callPackage @@ -3130,6 +3158,8 @@ self: { libraryHaskellDepends = [ base free mmorph mtl transformers-base ]; description = "Generalized stream processors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Chart" = callPackage @@ -4326,6 +4356,7 @@ self: { ]; description = "Deterministic random bit generator (aka RNG, PRNG) based HMACs, Hashes, and Ciphers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "DSA" = callPackage @@ -4350,7 +4381,6 @@ self: { description = "Implementation of DSA, based on the description of FIPS 186-4"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "DSH" = callPackage @@ -4557,14 +4587,12 @@ self: { }: mkDerivation { pname = "DataVersion"; - version = "0.1.0.0"; - sha256 = "13cw7rzp510spn5ncxdqyzz66d9dnyq7s650zmpmjx2cg456zw9x"; + version = "0.1.0.1"; + sha256 = "051fmlydjqhp67b1ivb7rhaz1vwya6g6r6akwwms1lkhl6d95yda"; libraryHaskellDepends = [ base generic-lens microlens ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "Type safe data migrations"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "Deadpan-DDP" = callPackage @@ -4648,6 +4676,7 @@ self: { libraryHaskellDepends = [ base haskell-src mtl TypeCompose ]; description = "Arrows for \"deep application\""; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "DeepDarkFantasy" = callPackage @@ -5351,8 +5380,6 @@ self: { libraryHaskellDepends = [ base mtl ]; description = "A library of efficient, purely-functional data structures (API)"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "EdisonCore" = callPackage @@ -5368,7 +5395,6 @@ self: { ]; description = "A library of efficient, purely-functional data structures (Core Implementations)"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "EditTimeReport" = callPackage @@ -5810,7 +5836,6 @@ self: { description = "A grab bag of modules"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "FAI" = callPackage @@ -6175,7 +6200,6 @@ self: { ]; description = "Functions on System.FilePath"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "FileSystem" = callPackage @@ -7083,6 +7107,8 @@ self: { benchmarkHaskellDepends = [ base criterion lens ]; description = "Typesafe functional GPU graphics programming"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "GPipe-Examples" = callPackage @@ -7145,7 +7171,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "playground"; - broken = true; }) {}; "GPipe-TextureLoad" = callPackage @@ -7200,6 +7225,7 @@ self: { description = "Some kind of game library or set of utilities"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Ganymede" = callPackage @@ -7956,6 +7982,7 @@ self: { ]; description = "Gtk-based GUIs for Tangible Values"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "GuiHaskell" = callPackage @@ -8006,7 +8033,6 @@ self: { ]; description = "The Haskell/R mixed programming environment"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "H"; }) {}; @@ -9319,7 +9345,6 @@ self: { license = lib.licenses.mit; platforms = lib.platforms.x86; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) gsl;}; "HROOT" = callPackage @@ -9571,8 +9596,6 @@ self: { testHaskellDepends = [ aeson attoparsec base HTF text ]; description = "Small template engine"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "HSoM" = callPackage @@ -9697,28 +9720,6 @@ self: { "HTTP" = callPackage ({ mkDerivation, array, base, bytestring, deepseq, httpd-shed , HUnit, mtl, network, network-uri, parsec, pureMD5, split - , test-framework, test-framework-hunit, time - }: - mkDerivation { - pname = "HTTP"; - version = "4000.3.16"; - sha256 = "0bgyj3ahqlyg0jw6qsm2sncp8mklc4h0dj91s043vb3ig01iq2fn"; - revision = "1"; - editedCabalFile = "0wagwgzfy2mqkha88fjl37ah0l7h4biz34v65993xd502ly68hk0"; - libraryHaskellDepends = [ - array base bytestring mtl network network-uri parsec time - ]; - testHaskellDepends = [ - base bytestring deepseq httpd-shed HUnit mtl network network-uri - pureMD5 split test-framework test-framework-hunit - ]; - description = "A library for client-side HTTP"; - license = lib.licenses.bsd3; - }) {}; - - "HTTP_4000_4_1" = callPackage - ({ mkDerivation, array, base, bytestring, deepseq, httpd-shed - , HUnit, mtl, network, network-uri, parsec, pureMD5, split , test-framework, test-framework-hunit, time, transformers }: mkDerivation { @@ -9737,7 +9738,6 @@ self: { ]; description = "A library for client-side HTTP"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "HTTP-Simple" = callPackage @@ -9926,6 +9926,7 @@ self: { description = "An Haskell library to drive the french Minitel through a serial port"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "HaPy" = callPackage @@ -10198,7 +10199,9 @@ self: { ]; description = "Yet another Hangman game"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hangman-ascii"; + broken = true; }) {}; "HappyTree" = callPackage @@ -10269,18 +10272,6 @@ self: { }) {}; "HasBigDecimal" = callPackage - ({ mkDerivation, base, hspec, QuickCheck }: - mkDerivation { - pname = "HasBigDecimal"; - version = "0.1.1"; - sha256 = "0ddyngd1mrx9s11nm7sh0nh76zi1zi7yjzmqk7xbpv6ijqka050a"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base hspec QuickCheck ]; - description = "A library for arbitrary precision decimal numbers"; - license = lib.licenses.asl20; - }) {}; - - "HasBigDecimal_0_2_0_0" = callPackage ({ mkDerivation, base, criterion, hspec, hspec-discover, QuickCheck }: mkDerivation { @@ -10295,7 +10286,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A library for arbitrary precision decimal numbers"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "HasCacBDD" = callPackage @@ -11150,6 +11140,23 @@ self: { license = lib.licenses.publicDomain; }) {inherit (pkgs) openssl;}; + "HsOpenSSL_0_11_7_3" = callPackage + ({ mkDerivation, base, bytestring, Cabal, network, openssl, time }: + mkDerivation { + pname = "HsOpenSSL"; + version = "0.11.7.3"; + sha256 = "0nb5rwz5rnyn4vzkl231r3maw4j4q9l92w07dxqyd1929p9yajgl"; + revision = "1"; + editedCabalFile = "03kaaxaxmggyn2zmsf4d8466j986sm5dw228ypf82nh6rmmzhfxj"; + setupHaskellDepends = [ base Cabal ]; + libraryHaskellDepends = [ base bytestring network time ]; + librarySystemDepends = [ openssl ]; + testHaskellDepends = [ base bytestring ]; + description = "Partial OpenSSL binding for Haskell"; + license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) openssl;}; + "HsOpenSSL-x509-system" = callPackage ({ mkDerivation, base, bytestring, HsOpenSSL, unix }: mkDerivation { @@ -11554,8 +11561,8 @@ self: { }: mkDerivation { pname = "IPv6DB"; - version = "0.3.2"; - sha256 = "1nhgbrfwabnxgbjwjyksaazb08awlhf7m8w7dx3xhm32m1dkkm6f"; + version = "0.3.3"; + sha256 = "1zgkn998cm2h1fxkydvzb8lxsshlgimz9xa91w7vdpq67gf7rx90"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -11710,6 +11717,7 @@ self: { ]; description = "Data interning (with compact regions where possible)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Interpolation" = callPackage @@ -12146,7 +12154,9 @@ self: { testToolDepends = [ tasty-discover ]; description = "Blurhash is a very compact represenation of a placeholder for an image"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "JuicyPixels-blurhash-exe"; + broken = true; }) {}; "JuicyPixels-canvas" = callPackage @@ -12906,6 +12916,7 @@ self: { description = "Library for RedPitaya"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "LargeCardinalHierarchy" = callPackage @@ -13185,10 +13196,8 @@ self: { }: mkDerivation { pname = "ListLike"; - version = "4.7.7"; - sha256 = "0h4yfzrf3ljvzf3x75nx791bpxlmdi7f42ff0xyfk8d498iws08a"; - revision = "1"; - editedCabalFile = "155y1r051ar9k8vhb54q5ga7a5rzlm4jx1c42pbw7cfy3c8af6hc"; + version = "4.7.8"; + sha256 = "1l9pfjy7gh7xqnzflixp37d6lsppmlffzmmq75xn9r8ij3r2jycs"; libraryHaskellDepends = [ array base bytestring containers deepseq dlist fmlist text utf8-string vector @@ -13670,7 +13679,6 @@ self: { description = "Automatic inductive functional programmer by systematic search"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "MailchimpSimple" = callPackage @@ -13775,6 +13783,7 @@ self: { description = "MaybeT monad transformer using transformers instead of mtl"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MazesOfMonad" = callPackage @@ -13992,8 +14001,8 @@ self: { pname = "MissingH"; version = "1.5.0.1"; sha256 = "0c92fdv32nq51kfdizi3lpxmnvscsgk6marfzaycd7k05aka8byb"; - revision = "1"; - editedCabalFile = "18jigc9mis823dhlx14yd0r59618jwqw93hsdyzmdrgfaigd6qpn"; + revision = "2"; + editedCabalFile = "11d922r06p00gcgzhb29hhjkq8ajy1xbqdiwdpbmhp2ar7fw7g9l"; libraryHaskellDepends = [ array base containers directory filepath hslogger mtl network network-bsd old-locale old-time parsec process regex-compat time @@ -14130,6 +14139,7 @@ self: { description = "Monad-transformer version of the Control.Exception module"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MonadCatchIO-mtl-foreign" = callPackage @@ -14157,8 +14167,6 @@ self: { ]; description = "Monad-transformer compatible version of the Control.Exception module"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "MonadCatchIO-transformers-foreign" = callPackage @@ -14175,6 +14183,7 @@ self: { description = "Polymorphic combinators for working with foreign functions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MonadCompose" = callPackage @@ -14244,6 +14253,8 @@ self: { pname = "MonadRandom"; version = "0.6"; sha256 = "0i6h9s2iqj71q06i9al3s2akmdjjx16h015qb81nhgjwi4q8cf69"; + revision = "1"; + editedCabalFile = "1swvjlsazh6wj1k8yj7ijarmw1sfmk9fv53h1hbfqcxva4gbhnkp"; libraryHaskellDepends = [ base mtl primitive random transformers transformers-compat ]; @@ -14261,6 +14272,8 @@ self: { libraryHaskellDepends = [ base MonadRandom mtl random ]; description = "Lazy monad for psuedo random-number generation"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MonadStack" = callPackage @@ -14652,6 +14665,7 @@ self: { ]; description = "NGLess implements ngless, a DSL for processing sequencing data"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "ngless"; }) {}; @@ -14723,6 +14737,7 @@ self: { description = "A Haskell interface to Lego Mindstorms NXT"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {bluetooth = null;}; "NXTDSL" = callPackage @@ -14765,6 +14780,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Easy-and-safe-to-use high-level Haskell bindings to NaCl"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "NameGenerator" = callPackage @@ -14877,7 +14894,6 @@ self: { description = "Simple scoring schemes for word alignments"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "NaturalSort" = callPackage @@ -15365,9 +15381,7 @@ self: { executableHaskellDepends = [ base filepath ]; description = "ONC RPC (aka Sun RPC) and XDR library"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; mainProgram = "hsrpcgen"; - broken = true; }) {}; "OSM" = callPackage @@ -15384,6 +15398,7 @@ self: { description = "Parse OpenStreetMap files"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "OTP" = callPackage @@ -15556,18 +15571,14 @@ self: { }) {}; "OneTuple" = callPackage - ({ mkDerivation, base, base-orphans, ghc-prim, hashable - , template-haskell - }: + ({ mkDerivation, base, ghc-prim, hashable, template-haskell }: mkDerivation { pname = "OneTuple"; version = "0.3.1"; sha256 = "1vry21z449ph9k61l5zm7mfmdwkwszxqdlawlhvwrd1gsn13d1cq"; revision = "3"; editedCabalFile = "0g4siv8s6dlrdsivap2qy6ig08y5bjbs93jk192zmgkp8iscncpw"; - libraryHaskellDepends = [ - base base-orphans ghc-prim template-haskell - ]; + libraryHaskellDepends = [ base ghc-prim template-haskell ]; testHaskellDepends = [ base hashable template-haskell ]; description = "Singleton Tuple"; license = lib.licenses.bsd3; @@ -15871,6 +15882,7 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Efficient ordered (by popcount) enumeration of bits"; license = lib.licenses.bsd3; + platforms = lib.platforms.x86; }) {}; "Ordinals" = callPackage @@ -16171,6 +16183,7 @@ self: { ]; description = "BaseSpecs used for @Parallel-Arrows-Definition@ and Co"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "Parallel-Arrows-Definition" = callPackage @@ -16182,6 +16195,8 @@ self: { libraryHaskellDepends = [ base deepseq split ]; description = "Multithreaded evaluation using Arrows"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Parallel-Arrows-Eden" = callPackage @@ -16222,6 +16237,7 @@ self: { ]; description = "GpH based backend for @Parallel-Arrows-Definition@ in a multicore variant"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "Parallel-Arrows-ParMonad" = callPackage @@ -16241,6 +16257,7 @@ self: { ]; description = "Par Monad (@monad-par@) based backend for @Parallel-Arrows-Definition@"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "Parry" = callPackage @@ -16694,6 +16711,8 @@ self: { ]; description = "Efficient multidimensional arrays"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "PrimitiveArray-Pretty" = callPackage @@ -16962,28 +16981,6 @@ self: { }: mkDerivation { pname = "PyF"; - version = "0.10.2.0"; - sha256 = "0a1bq7c3vx6yp7745xr2vlxjsqgqa0s1f7yzqnfsybqwff03zbcw"; - revision = "1"; - editedCabalFile = "0hinbn56d8bw45zxazpmgv1b6lcmlcys9jfdkv2lyr5j44pzpvvj"; - libraryHaskellDepends = [ - base bytestring ghc ghc-boot mtl parsec template-haskell text time - ]; - testHaskellDepends = [ - base bytestring deepseq filepath hspec HUnit process - template-haskell temporary text time - ]; - description = "Quasiquotations for a python like interpolated string formatter"; - license = lib.licenses.bsd3; - }) {}; - - "PyF_0_11_1_0" = callPackage - ({ mkDerivation, base, bytestring, deepseq, filepath, ghc, ghc-boot - , hspec, HUnit, mtl, parsec, process, template-haskell, temporary - , text, time - }: - mkDerivation { - pname = "PyF"; version = "0.11.1.0"; sha256 = "07qwws303g4yzs01qi4r2nqjyp5sk2naiqb4qh9kirp54fn53m4g"; libraryHaskellDepends = [ @@ -16995,7 +16992,6 @@ self: { ]; description = "Quasiquotations for a python like interpolated string formatter"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "QIO" = callPackage @@ -17156,6 +17152,8 @@ self: { benchmarkHaskellDepends = [ base hspec QuickCheck ]; description = "Valid and Invalid generator"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "QuickPlot" = callPackage @@ -17293,7 +17291,6 @@ self: { description = "A reflective JSON serializer/parser"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "RLP" = callPackage @@ -17420,7 +17417,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "RNAdotplot"; - broken = true; }) {}; "RNAlien" = callPackage @@ -17521,8 +17517,8 @@ self: { pname = "RabbitMQ"; version = "0.1.0.0"; sha256 = "14rxwsxxqhj91alcnvvp6949ig0ifnls9x2mgnd1jmknqz7pwvrs"; - revision = "1"; - editedCabalFile = "17ypl1n9f1nyc1axdmmfgb188d0ml7i3sqgmbka1k4l0p2ik9qpp"; + revision = "2"; + editedCabalFile = "1m6pgha36ag2r0vnr242bndgbpq14v4ng6pab96pxzlj1yjlij6l"; libraryHaskellDepends = [ array base binary bytestring clock containers HsOpenSSL io-streams monad-control network network-uri openssl-streams split stm text @@ -18130,8 +18126,6 @@ self: { librarySystemDepends = [ smpeg ]; description = "Binding to the SMPEG library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) smpeg;}; "SDL-ttf" = callPackage @@ -18533,8 +18527,6 @@ self: { ]; description = "A parser for SWMM 5 binary .OUT files"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "SableCC2Hs" = callPackage @@ -18744,6 +18736,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "simple static linked SHA3 using private symbols and the ref impl"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "SegmentTree" = callPackage @@ -18865,17 +18859,17 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "ShellCheck_0_7_2" = callPackage + "ShellCheck" = callPackage ({ mkDerivation, aeson, array, base, bytestring, containers , deepseq, Diff, directory, filepath, mtl, parsec, process , QuickCheck, regex-tdfa }: mkDerivation { pname = "ShellCheck"; - version = "0.7.2"; - sha256 = "0wl43njaq95l35y5mvipwp1db9vr551nz9wl0xy83j1x1kc38xgz"; + version = "0.8.0"; + sha256 = "05jlapp4m997w36h2wszdxz9gvczdczaylypsbn14jqpb650w232"; revision = "1"; - editedCabalFile = "1w65zcr97mghraif6bgcdabzy2dp72gasaad57a9b5yp9i27p2rl"; + editedCabalFile = "1c942n7lz59b0acvppg25k01f87rj3icrza9pfp9mlpiwaq1y8qw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -18892,37 +18886,35 @@ self: { ]; description = "Shell script analysis tool"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "shellcheck"; }) {}; - "ShellCheck" = callPackage + "ShellCheck_0_9_0" = callPackage ({ mkDerivation, aeson, array, base, bytestring, containers - , deepseq, Diff, directory, filepath, mtl, parsec, process - , QuickCheck, regex-tdfa + , deepseq, Diff, directory, fgl, filepath, mtl, parsec, process + , QuickCheck, regex-tdfa, transformers }: mkDerivation { pname = "ShellCheck"; - version = "0.8.0"; - sha256 = "05jlapp4m997w36h2wszdxz9gvczdczaylypsbn14jqpb650w232"; - revision = "1"; - editedCabalFile = "1c942n7lz59b0acvppg25k01f87rj3icrza9pfp9mlpiwaq1y8qw"; + version = "0.9.0"; + sha256 = "071k2gc8rzpg9lwq9g10c9xx0zm1wcgsf8v4n1csj9fm56vy7gmb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson array base bytestring containers deepseq Diff directory - filepath mtl parsec process QuickCheck regex-tdfa + aeson array base bytestring containers deepseq Diff directory fgl + filepath mtl parsec process QuickCheck regex-tdfa transformers ]; executableHaskellDepends = [ - aeson array base bytestring containers deepseq Diff directory - filepath mtl parsec QuickCheck regex-tdfa + aeson array base bytestring containers deepseq Diff directory fgl + filepath mtl parsec QuickCheck regex-tdfa transformers ]; testHaskellDepends = [ - aeson array base bytestring containers deepseq Diff directory - filepath mtl parsec QuickCheck regex-tdfa + aeson array base bytestring containers deepseq Diff directory fgl + filepath mtl parsec QuickCheck regex-tdfa transformers ]; description = "Shell script analysis tool"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "shellcheck"; }) {}; @@ -19042,6 +19034,7 @@ self: { ]; description = "A programming model for declarative, high performance user interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Shpadoinkle-backend-pardiff" = callPackage @@ -19079,7 +19072,6 @@ self: { description = "Use the high-performance Snabbdom virtual dom library written in JavaScript"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "Shpadoinkle-backend-static" = callPackage @@ -19116,6 +19108,8 @@ self: { libraryHaskellDepends = [ aeson base jsaddle lens text unliftio ]; description = "Debugging tools for Shpadoinkle applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Shpadoinkle-developer-tools" = callPackage @@ -19249,6 +19243,7 @@ self: { libraryHaskellDepends = [ base lens Shpadoinkle text ]; description = "Lens combinators for Shpadoinkle applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Shpadoinkle-router" = callPackage @@ -19284,6 +19279,7 @@ self: { libraryHaskellDepends = [ base lens Shpadoinkle streaming text ]; description = "Integration of the streaming library with Shpadoinkle continuations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Shpadoinkle-template" = callPackage @@ -19598,7 +19594,6 @@ self: { description = "Abstract full system simulator"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "SoccerFun" = callPackage @@ -20232,7 +20227,6 @@ self: { description = "Library which aids constructing generic (SYB3-based) widgets"; license = "LGPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "SyntaxMacros" = callPackage @@ -20329,6 +20323,8 @@ self: { ]; description = "A Transactional cache with user-defined persistence"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "THEff" = callPackage @@ -20412,6 +20408,7 @@ self: { libraryHaskellDepends = [ base DeepArrow TypeCompose ]; description = "Tangible Values -- composable interfaces"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "TYB" = callPackage @@ -20806,6 +20803,8 @@ self: { libraryHaskellDepends = [ base binary bytestring dataenc ]; description = "TigerHash with C implementation"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "TimePiece" = callPackage @@ -21126,6 +21125,8 @@ self: { libraryHaskellDepends = [ base base-orphans ]; description = "Type composition classes & instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "TypeIlluminator" = callPackage @@ -21256,7 +21257,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "UTFTConverter"; - broken = true; }) {}; "Unique" = callPackage @@ -21491,8 +21491,6 @@ self: { doHaddock = false; description = "This package is obsolete"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "VecN" = callPackage @@ -21564,7 +21562,6 @@ self: { description = "ViennaRNA v2 extensions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ViennaRNAParser" = callPackage @@ -21613,6 +21610,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "Villefort"; + broken = true; }) {}; "Vulkan" = callPackage @@ -21657,7 +21655,6 @@ self: { ]; description = "WAVE audio file IO library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sinewave"; }) {}; @@ -21831,6 +21828,8 @@ self: { testHaskellDepends = [ base ]; description = "Simple set types. Useful to create sets of arbitrary types and nested sets."; license = lib.licenses.lgpl3Plus; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Weather" = callPackage @@ -22286,7 +22285,6 @@ self: { description = "Workflow patterns over a monad for thread state logging & recovery"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "WxGeneric" = callPackage @@ -22613,6 +22611,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "YACPong"; + broken = true; }) {}; "YFrob" = callPackage @@ -22698,8 +22697,8 @@ self: { ({ mkDerivation, base, deepseq, random, simple-affine-space }: mkDerivation { pname = "Yampa"; - version = "0.13.7"; - sha256 = "0fz4v7q0q1npqxgjcc5ig9ynz1jya54a3vdl5p2mzymg91hwapf8"; + version = "0.14"; + sha256 = "14fhg7pkvm3rjcw6v5c0jxnq2l7v3rhw1bkb3a6g1s27alar9ynl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -22818,26 +22817,24 @@ self: { "Z-Data" = callPackage ({ mkDerivation, base, bytestring, Cabal, case-insensitive - , containers, deepseq, ghc-prim, hashable, hspec, hspec-discover - , HUnit, integer-gmp, primitive, QuickCheck, quickcheck-instances - , random, scientific, tagged, template-haskell, time - , unicode-collation, unordered-containers, uuid-types + , containers, deepseq, hashable, hspec, hspec-discover, HUnit + , primitive, QuickCheck, quickcheck-instances, random, scientific + , tagged, template-haskell, time, unicode-collation + , unordered-containers, uuid-types }: mkDerivation { pname = "Z-Data"; - version = "1.2.0.0"; - sha256 = "1kf20s8y2jgr4gsx72mj9ax6mxrwxz7ss034qsajzd8l3j1h5bir"; + version = "2.0.0.1"; + sha256 = "0w78yrphmb7w2vay75r1a5rlcar1345rvbsq8cx8zh3jcx2r802g"; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ - base bytestring case-insensitive containers deepseq ghc-prim - hashable integer-gmp primitive QuickCheck random scientific tagged - template-haskell time unicode-collation unordered-containers - uuid-types + base bytestring case-insensitive containers deepseq hashable + primitive QuickCheck random scientific tagged template-haskell time + unicode-collation unordered-containers uuid-types ]; testHaskellDepends = [ - base containers hashable hspec HUnit integer-gmp primitive - QuickCheck quickcheck-instances scientific time - unordered-containers + base containers hashable hspec HUnit primitive QuickCheck + quickcheck-instances scientific time unordered-containers ]; testToolDepends = [ hspec-discover ]; description = "Array, vector and text"; @@ -22854,8 +22851,8 @@ self: { }: mkDerivation { pname = "Z-IO"; - version = "1.0.1.0"; - sha256 = "0w82pfbs7f8yiw7jv95m5gh8yd23v5gwdxjh7z8cwf173r5j6g0k"; + version = "2.0.0.0"; + sha256 = "1n621brs608v6kpnjxb3hgh3h0garw8k1hr1ym5l8l0v7h2gv085"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -22974,6 +22971,7 @@ self: { libraryHaskellDepends = [ base TypeCompose ]; description = "Zipping folds"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "ZipperAG" = callPackage @@ -24712,6 +24710,7 @@ self: { description = "AcousticBrainz API client"; license = lib.licenses.cc0; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "acquire" = callPackage @@ -24746,6 +24745,8 @@ self: { pname = "active"; version = "0.2.0.16"; sha256 = "1fz2rsyk41p9f9avlmn9lrdmii5alv88lkw677mw8q6mzyxpw67i"; + revision = "1"; + editedCabalFile = "0cyfwrr5c14f5rgrf8dv7i8qsrnmnzigw0xp6l88kfxd61zhk4n8"; libraryHaskellDepends = [ base lens linear semigroupoids semigroups vector ]; @@ -24847,10 +24848,8 @@ self: { }: mkDerivation { pname = "acts"; - version = "0.3.1.0"; - sha256 = "06bpayfa8vwj8dqlqp71nw2s9iwbffdknkk4hpazd4r1wvhnrg37"; - revision = "4"; - editedCabalFile = "081arnkkll6xkni350ywsnwzagnki2ly5in42cx5zcpfp1xbssmk"; + version = "0.3.1.1"; + sha256 = "1szr7afyk6hwx7hipwwsvhv7y57if4fydsblphvf8fmwg299ya4l"; libraryHaskellDepends = [ base deepseq finitary finite-typelits groups ]; @@ -24991,6 +24990,41 @@ self: { broken = true; }) {}; + "adhoc-fixtures" = callPackage + ({ mkDerivation, base, hspec, hspec-core, hspec-discover + , safe-exceptions, yarl + }: + mkDerivation { + pname = "adhoc-fixtures"; + version = "0.1.0.0"; + sha256 = "16m8a2b2z8n3zxr8dash6k1fq16ks7vi3dza751sd12ay7m0gn2w"; + libraryHaskellDepends = [ base safe-exceptions yarl ]; + testHaskellDepends = [ + base hspec hspec-core hspec-discover safe-exceptions yarl + ]; + testToolDepends = [ hspec-discover ]; + description = "Manage fine grained fixtures"; + license = lib.licenses.isc; + }) {}; + + "adhoc-fixtures-hspec" = callPackage + ({ mkDerivation, adhoc-fixtures, base, hspec, hspec-core + , hspec-discover, safe-exceptions, yarl + }: + mkDerivation { + pname = "adhoc-fixtures-hspec"; + version = "0.1.0.0"; + sha256 = "0xzgq11lwm66wi3sdlxxpqjgv9wfrysjvn28zyrjrq791vmlg0p9"; + libraryHaskellDepends = [ adhoc-fixtures base hspec yarl ]; + testHaskellDepends = [ + adhoc-fixtures base hspec hspec-core hspec-discover safe-exceptions + yarl + ]; + testToolDepends = [ hspec-discover ]; + description = "Manage fine grained fixtures"; + license = lib.licenses.isc; + }) {}; + "adhoc-network" = callPackage ({ mkDerivation, base, bytestring, containers, Crypto, dataenc , HaXml, hsgnutls, network, old-locale, parsec, pkcs1, random, time @@ -25045,6 +25079,7 @@ self: { description = "See README for more info"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "adjunctions" = callPackage @@ -25167,8 +25202,8 @@ self: { }: mkDerivation { pname = "advent-of-code-api"; - version = "0.2.8.1"; - sha256 = "17s80883jq75i129b1976qbvr56ml0bsadhfnx2qybbh7b55gxfh"; + version = "0.2.8.2"; + sha256 = "1z4y8bssmaappc7hamdzynjxd1mamn7vzyc0nymldxb8ly7fvpwy"; libraryHaskellDepends = [ aeson base bytestring containers deepseq directory filepath finite-typelits http-api-data http-client http-client-tls @@ -25180,38 +25215,59 @@ self: { license = lib.licenses.bsd3; }) {}; + "advent-of-code-api_0_2_8_4" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, deepseq + , directory, filepath, finite-typelits, http-api-data, http-client + , http-client-tls, http-media, HUnit, megaparsec, mtl, profunctors + , servant, servant-client, servant-client-core, stm, tagsoup, text + , time, time-compat + }: + mkDerivation { + pname = "advent-of-code-api"; + version = "0.2.8.4"; + sha256 = "1l7bl0aqn5d6ph730jpwb5h0lwhvrkcw4vla0l73sxrm52j9ma58"; + libraryHaskellDepends = [ + aeson base bytestring containers deepseq directory filepath + finite-typelits http-api-data http-client http-client-tls + http-media megaparsec mtl profunctors servant servant-client + servant-client-core stm tagsoup text time time-compat + ]; + testHaskellDepends = [ base directory filepath HUnit text ]; + description = "Advent of Code REST API bindings and servant API"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "advent-of-code-ocr" = callPackage ({ mkDerivation, base, containers, criterion, data-default-class - , heredoc, hspec, optparse-applicative, template-haskell, th-lift - , th-lift-instances + , heredoc, hspec, optparse-applicative, template-haskell, th-compat + , th-lift, th-lift-instances }: mkDerivation { pname = "advent-of-code-ocr"; - version = "0.1.2.0"; - sha256 = "0ppa386cbcdwx2k12ya19fsjlrgqgljdryv4mb3a0lrk44804k5c"; + version = "0.1.2.1"; + sha256 = "0dm8kv1k3h83fsblm64d8fqm760da8fl99rnxv2kvkp4nw8nfjm8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base containers data-default-class heredoc template-haskell th-lift - th-lift-instances + base containers data-default-class heredoc template-haskell + th-compat th-lift th-lift-instances ]; executableHaskellDepends = [ base containers data-default-class heredoc optparse-applicative - template-haskell th-lift th-lift-instances + template-haskell th-compat th-lift th-lift-instances ]; testHaskellDepends = [ base containers data-default-class heredoc hspec template-haskell - th-lift th-lift-instances + th-compat th-lift th-lift-instances ]; benchmarkHaskellDepends = [ base containers criterion data-default-class heredoc - template-haskell th-lift th-lift-instances + template-haskell th-compat th-lift th-lift-instances ]; description = "Parse Advent of Code ASCII art letters"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "advent-of-code-ocr"; - broken = true; }) {}; "aern2-fun" = callPackage @@ -25514,18 +25570,6 @@ self: { }) {}; "aeson-commit" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, hspec, mtl, text }: - mkDerivation { - pname = "aeson-commit"; - version = "1.4"; - sha256 = "1xbck5hcbfqm2kc3yzrl1dzdmjl9zf84vc33ird3c50ny884amwa"; - libraryHaskellDepends = [ aeson base mtl text ]; - testHaskellDepends = [ aeson aeson-qq base hspec text ]; - description = "Parse Aeson data with commitment"; - license = lib.licenses.bsd3; - }) {}; - - "aeson-commit_1_6_0" = callPackage ({ mkDerivation, aeson, aeson-qq, base, hspec, text, transformers }: mkDerivation { @@ -25536,7 +25580,6 @@ self: { testHaskellDepends = [ aeson aeson-qq base hspec text ]; description = "Parse Aeson data with commitment"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-compat" = callPackage @@ -25620,8 +25663,6 @@ self: { testToolDepends = [ tasty-discover ]; description = "JSON encoding/decoding for dependent-sum"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "aeson-deriving" = callPackage @@ -25820,7 +25861,9 @@ self: { ]; description = "Derivation of Aeson instances for GADTs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "readme"; + broken = true; }) {}; "aeson-generic-compat" = callPackage @@ -25972,25 +26015,6 @@ self: { }) {}; "aeson-optics" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring - , optics-core, optics-extra, scientific, text, unordered-containers - , vector - }: - mkDerivation { - pname = "aeson-optics"; - version = "1.1.1"; - sha256 = "1na5nsbp4sds8q289knzj4rgiwabbinxm0ihh66jfz0sjiia4wp7"; - revision = "1"; - editedCabalFile = "0wyn0l2qhlrlrf5xy1grk9mshlxsfy566ayabg9f92w7m89n0kff"; - libraryHaskellDepends = [ - aeson attoparsec base base-compat bytestring optics-core - optics-extra scientific text unordered-containers vector - ]; - description = "Law-abiding optics for aeson"; - license = lib.licenses.mit; - }) {}; - - "aeson-optics_1_2_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, optics-core , optics-extra, scientific, text, text-short, vector }: @@ -26004,7 +26028,6 @@ self: { ]; description = "Law-abiding optics for aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-options" = callPackage @@ -26049,8 +26072,6 @@ self: { testHaskellDepends = [ base hspec text ]; description = "Tiny library to get fields from JSON format"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "aeson-prefix" = callPackage @@ -26188,61 +26209,27 @@ self: { "aeson-schemas" = callPackage ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq - , first-class-families, hashable, hint, interpolate, megaparsec - , QuickCheck, raw-strings-qq, tasty, tasty-golden, tasty-hunit - , tasty-quickcheck, template-haskell, text, th-orphans - , th-test-utils, unordered-containers - }: - mkDerivation { - pname = "aeson-schemas"; - version = "1.3.5.1"; - sha256 = "1cp6q92z0zkz9kdkaialcx2v9plvmkcghrg54jv841iqxjwcbj3r"; - revision = "1"; - editedCabalFile = "1yllgsypwpk627x29bjcv49y4m4g8q2xgkj34z6nyib6w1bbjmna"; - libraryHaskellDepends = [ - aeson base first-class-families hashable megaparsec - template-haskell text unordered-containers - ]; - testHaskellDepends = [ - aeson aeson-qq base deepseq first-class-families hashable hint - interpolate megaparsec QuickCheck raw-strings-qq tasty tasty-golden - tasty-hunit tasty-quickcheck template-haskell text th-orphans - th-test-utils unordered-containers - ]; - benchmarkHaskellDepends = [ - aeson base criterion deepseq first-class-families hashable - megaparsec template-haskell text th-test-utils unordered-containers - ]; - description = "Easily consume JSON data on-demand with type-safety"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "aeson-schemas_1_4_0_0" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq - , filepath, first-class-families, hashable, hint, interpolate + , directory, filepath, first-class-families, hashable, interpolate , megaparsec, process, QuickCheck, raw-strings-qq, tasty , tasty-golden, tasty-hunit, tasty-quickcheck, template-haskell , temporary, text, th-orphans, th-test-utils, unordered-containers }: mkDerivation { pname = "aeson-schemas"; - version = "1.4.0.0"; - sha256 = "0nch4andx0w0l7dlw64ajz503f05zancx42178dsd5fskvd75ks2"; + version = "1.4.0.1"; + sha256 = "1yv4d4i8gmbv0mmlalhlafn9a6kv51wdwnpbksiajm6m47bajqym"; libraryHaskellDepends = [ aeson base first-class-families hashable megaparsec template-haskell text unordered-containers ]; testHaskellDepends = [ - aeson aeson-qq base deepseq filepath first-class-families hashable - hint interpolate megaparsec process QuickCheck raw-strings-qq tasty - tasty-golden tasty-hunit tasty-quickcheck template-haskell - temporary text th-orphans th-test-utils unordered-containers + aeson aeson-qq base deepseq directory filepath interpolate process + QuickCheck raw-strings-qq tasty tasty-golden tasty-hunit + tasty-quickcheck template-haskell temporary text th-orphans + th-test-utils ]; benchmarkHaskellDepends = [ - aeson base criterion deepseq first-class-families hashable - megaparsec template-haskell text th-test-utils unordered-containers + aeson base criterion deepseq template-haskell th-test-utils ]; description = "Easily consume JSON data on-demand with type-safety"; license = lib.licenses.bsd3; @@ -26362,29 +26349,6 @@ self: { "aeson-typescript" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, directory , filepath, hspec, mtl, process, string-interpolate - , template-haskell, temporary, text, th-abstraction - , unordered-containers - }: - mkDerivation { - pname = "aeson-typescript"; - version = "0.3.0.1"; - sha256 = "0xbj6m1lxpv4qclz5msrdplpy3mdxq5icjl3fq4bwbqy5rs6vczv"; - libraryHaskellDepends = [ - aeson base containers mtl string-interpolate template-haskell text - th-abstraction unordered-containers - ]; - testHaskellDepends = [ - aeson base bytestring containers directory filepath hspec mtl - process string-interpolate template-haskell temporary text - th-abstraction unordered-containers - ]; - description = "Generate TypeScript definition files from your ADTs"; - license = lib.licenses.bsd3; - }) {}; - - "aeson-typescript_0_4_2_0" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, directory - , filepath, hspec, mtl, process, string-interpolate , template-haskell, temporary, text, th-abstraction, transformers , unordered-containers }: @@ -26403,7 +26367,6 @@ self: { ]; description = "Generate TypeScript definition files from your ADTs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-utils" = callPackage @@ -26448,8 +26411,8 @@ self: { }: mkDerivation { pname = "aeson-via"; - version = "0.2.0"; - sha256 = "0v2k9ilm60hnjzsjw1x1b0qcyc6b6db64k6rkci9mbnfqv8bj2wj"; + version = "0.2.1"; + sha256 = "0g8sf1sv1fmqkqmfwsb8sxbgy63zg503gi9sxhhc9apfrp5z9kig"; libraryHaskellDepends = [ aeson aeson-casing base newtype-generics text ]; @@ -26632,7 +26595,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "ag-pictgen"; - broken = true; }) {}; "agda-language-server" = callPackage @@ -26734,8 +26696,8 @@ self: { }: mkDerivation { pname = "agda-unused"; - version = "0.2.0"; - sha256 = "0fxrmcc0kn3jyjbij2fv72pw0r1l2rvg8wglj1i8d438jqpffigw"; + version = "0.3.0"; + sha256 = "0yljqv24xws32vnkaqxngqmy6p0ad55razgcr1igyrc10dq4pm24"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -26889,6 +26851,8 @@ self: { ]; description = "air-extra"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "air-spec" = callPackage @@ -27115,6 +27079,8 @@ self: { ]; description = "GPSS-like DSL for Aivika"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "aivika-lattice" = callPackage @@ -27458,8 +27424,8 @@ self: { }: mkDerivation { pname = "algebra-checkers"; - version = "0.1.0.0"; - sha256 = "0phrm0lncqbjqsyxhk3ifmzfb2q42v6g81qklh49n1y73naykg9v"; + version = "0.1.0.1"; + sha256 = "1b1sj3niy3zwv2v412n6fnjapsz0xsl1zav8s326lx9gy9dxfdqs"; libraryHaskellDepends = [ ansi-terminal base checkers containers groups mtl pretty QuickCheck syb template-haskell th-instance-reification transformers @@ -27721,6 +27687,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "acb"; + broken = true; }) {}; "algorithmic-composition-basic" = callPackage @@ -27739,7 +27706,6 @@ self: { ]; description = "Helps to create experimental music from a file (or its part) and a Ukrainian text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "algorithmic-composition-complex" = callPackage @@ -27761,6 +27727,7 @@ self: { description = "Helps to create more complex experimental music from a file (especially timbre)"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "algorithmic-composition-frequency-shift" = callPackage @@ -27789,7 +27756,6 @@ self: { libraryHaskellDepends = [ algorithmic-composition-basic base ]; description = "Some variants of the overtones functions to generate a timbre"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "align" = callPackage @@ -27834,6 +27800,7 @@ self: { ]; description = "Find relative time displacement of two recordings of the same music"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "align-audio"; }) {}; @@ -27993,6 +27960,8 @@ self: { testHaskellDepends = [ base containers random tasty tasty-hunit ]; description = "Rollback/replay NetCode for realtime, deterministic, multiplayer games"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "alpha" = callPackage @@ -28203,6 +28172,8 @@ self: { description = "Binding to the ALSA Library API (MIDI sequencer)"; license = lib.licenses.bsd3; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) alsa-lib;}; "alsa-seq-tests" = callPackage @@ -31278,6 +31249,7 @@ self: { description = "Client for analyze service"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "anansi" = callPackage @@ -31488,6 +31460,8 @@ self: { libraryHaskellDepends = [ base bytestring text ]; description = "Convert camelCase to snake_case and vice versa"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "animascii" = callPackage @@ -31794,8 +31768,8 @@ self: { ({ mkDerivation, base, colour }: mkDerivation { pname = "ansi-terminal"; - version = "0.11.3"; - sha256 = "0swy5alj4xvfsnjrfiwxdlgzdnggjy6lgbfwph2d7c8zyzn67mgl"; + version = "0.11.4"; + sha256 = "098f8bdxqmgxaz8y87s6b6bshsq950zq0b75rmbihp2k1a7y963q"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base colour ]; @@ -31805,13 +31779,14 @@ self: { "ansi-terminal-game" = callPackage ({ mkDerivation, ansi-terminal, array, base, bytestring, cereal - , clock, containers, exceptions, hspec, linebreak, mintty, mtl - , QuickCheck, random, split, terminal-size, timers-tick, unidecode + , clock, containers, exceptions, hspec, hspec-discover, linebreak + , mintty, mtl, QuickCheck, random, split, terminal-size + , timers-tick, unidecode }: mkDerivation { pname = "ansi-terminal-game"; - version = "1.8.0.0"; - sha256 = "09wd7gh8zm90wq080fsah0qjbr9x3vrh89am7yf0d84a0akqw65m"; + version = "1.8.0.1"; + sha256 = "1fic8wjkbpfd076shfrq8pxlnpsrm59yilbhiinynlgr4vhjncz5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -31824,6 +31799,7 @@ self: { exceptions hspec linebreak mintty mtl QuickCheck random split terminal-size timers-tick unidecode ]; + testToolDepends = [ hspec-discover ]; description = "sdl-like functions for terminal applications, based on ansi-terminal"; license = lib.licenses.gpl3Only; }) {}; @@ -32371,6 +32347,8 @@ self: { testHaskellDepends = [ base ghc-prim ]; description = "prelude for Algebra of Programming"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "aos-signature" = callPackage @@ -32462,6 +32440,8 @@ self: { benchmarkSystemDepends = [ openssl ]; description = "Apache specific MD5 digest algorighm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) openssl;}; "apart" = callPackage @@ -32787,6 +32767,8 @@ self: { pname = "api-tools"; version = "0.10.0.0"; sha256 = "0hz4pa0n4wf9kd8r98xd0c39p790fn9iaqzjj2m653641acjbm0w"; + revision = "1"; + editedCabalFile = "13c5qg7f1a0hh1x2dmw6hnpi2vkmcasg38wl3lzf2plfcibqb01m"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -33419,7 +33401,7 @@ self: { broken = true; }) {}; - "apply-refact" = callPackage + "apply-refact_0_9_3_0" = callPackage ({ mkDerivation, base, containers, directory, extra, filemanip , filepath, ghc, ghc-boot-th, ghc-exactprint, optparse-applicative , process, refact, silently, syb, tasty, tasty-expected-failure @@ -33450,10 +33432,11 @@ self: { ]; description = "Perform refactorings specified by the refact library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "refactor"; }) {}; - "apply-refact_0_10_0_0" = callPackage + "apply-refact" = callPackage ({ mkDerivation, base, containers, directory, extra, filemanip , filepath, ghc, ghc-boot-th, ghc-exactprint, ghc-paths , optparse-applicative, process, refact, silently, syb, tasty @@ -33484,7 +33467,6 @@ self: { ]; description = "Perform refactorings specified by the refact library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "refactor"; }) {}; @@ -33969,6 +33951,8 @@ self: { ]; description = "Distribute hackage packages to archlinux"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "arch-web" = callPackage @@ -34173,8 +34157,8 @@ self: { }: mkDerivation { pname = "arduino-copilot"; - version = "1.7.3"; - sha256 = "02jk4vx6wdbci4rw5gb878y28g2x4krs6v1478cgp8z181kj38xy"; + version = "1.7.4"; + sha256 = "1yin826p57pmabv763l9igz6lk6c43f0y6cg2f5lqi6q1662x03w"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language directory filepath mtl optparse-applicative sketch-frp-copilot temporary @@ -34420,10 +34404,8 @@ self: { }: mkDerivation { pname = "arion-compose"; - version = "0.1.3.0"; - sha256 = "1pw0vqx1y3zgq303gdgd3vkz95mqrv8hl0pfkw6kyc49hj7l864y"; - revision = "1"; - editedCabalFile = "03pp8dhxdcjkxw2mxgy667p266chbsqn13vc900cccy3qibqqk6m"; + version = "0.2.0.0"; + sha256 = "051lbklcdj7rz9l5mnbijwjy62g0xnvx7s3yjfrb4x9qm3jpscci"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -35079,26 +35061,6 @@ self: { }: mkDerivation { pname = "ascii"; - version = "1.1.3.0"; - sha256 = "0pzyamd64mj8sx5a43gi7yjdy5dx6k9648ihbgsri8k8srlhm0c8"; - revision = "1"; - editedCabalFile = "0lxjb940qm86i1b2i9dgyj8874y49spwmkm5ninxd5hs7g9manll"; - libraryHaskellDepends = [ - ascii-case ascii-char ascii-group ascii-numbers ascii-predicates - ascii-superset ascii-th base bytestring text - ]; - testHaskellDepends = [ base hedgehog text ]; - description = "The ASCII character set and encoding"; - license = lib.licenses.asl20; - }) {}; - - "ascii_1_2_3_0" = callPackage - ({ mkDerivation, ascii-case, ascii-char, ascii-group, ascii-numbers - , ascii-predicates, ascii-superset, ascii-th, base, bytestring - , hedgehog, text - }: - mkDerivation { - pname = "ascii"; version = "1.2.3.0"; sha256 = "0s6w1wv6hjx1abz038cw7fyl8ilbs3cxmcs989c3hh9659l82p2j"; revision = "2"; @@ -35110,7 +35072,6 @@ self: { testHaskellDepends = [ base hedgehog text ]; description = "The ASCII character set and encoding"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "ascii-art-to-unicode" = callPackage @@ -35218,26 +35179,6 @@ self: { "ascii-numbers" = callPackage ({ mkDerivation, ascii-case, ascii-char, ascii-superset, base - , bytestring, d10, hashable, hedgehog, invert, text - }: - mkDerivation { - pname = "ascii-numbers"; - version = "1.0.0.0"; - sha256 = "1zmid1p3gqdmbriq6d87fyz69pksh1ha2x7w4m4pw7nch85440f5"; - libraryHaskellDepends = [ - ascii-case ascii-char ascii-superset base bytestring d10 hashable - text - ]; - testHaskellDepends = [ - ascii-case ascii-char ascii-superset base bytestring d10 hashable - hedgehog invert text - ]; - description = "ASCII representations of numbers"; - license = lib.licenses.asl20; - }) {}; - - "ascii-numbers_1_1_0_0" = callPackage - ({ mkDerivation, ascii-case, ascii-char, ascii-superset, base , bytestring, hashable, hedgehog, invert, text }: mkDerivation { @@ -35255,25 +35196,12 @@ self: { ]; description = "ASCII representations of numbers"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "ascii-predicates" = callPackage ({ mkDerivation, ascii-char, base, hedgehog }: mkDerivation { pname = "ascii-predicates"; - version = "1.0.0.10"; - sha256 = "1964w50mvfwq4x6ss6vhz7q7fg8b9bfhczv95ll9cxs61qn2rir0"; - libraryHaskellDepends = [ ascii-char base ]; - testHaskellDepends = [ ascii-char base hedgehog ]; - description = "Various categorizations of ASCII characters"; - license = lib.licenses.asl20; - }) {}; - - "ascii-predicates_1_0_1_0" = callPackage - ({ mkDerivation, ascii-char, base, hedgehog }: - mkDerivation { - pname = "ascii-predicates"; version = "1.0.1.0"; sha256 = "1zqlly878qlrkjw2m4mgs4cgw6xspn0alx6xnvnrp1r2b412ykyn"; revision = "2"; @@ -35282,7 +35210,6 @@ self: { testHaskellDepends = [ ascii-char base hedgehog ]; description = "Various categorizations of ASCII characters"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "ascii-progress" = callPackage @@ -35520,6 +35447,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "asif"; + broken = true; }) {}; "asil" = callPackage @@ -35539,7 +35467,6 @@ self: { description = "Action Script Instrumentation Library"; license = "LGPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "asn" = callPackage @@ -36389,6 +36316,7 @@ self: { description = "Code that helps you create a valid Atlassian Connect Descriptor"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "atmos" = callPackage @@ -36467,6 +36395,8 @@ self: { libraryHaskellDepends = [ base bimap containers mtl process syb ]; description = "An EDSL for embedded hard realtime applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "atom-basic" = callPackage @@ -36521,7 +36451,6 @@ self: { description = "Convenience functions for using Atom with the MSP430 microcontroller family"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "atomic-file-ops" = callPackage @@ -36766,6 +36695,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "atspkg"; + broken = true; }) {}; "ats-setup" = callPackage @@ -36826,8 +36756,8 @@ self: { pname = "attenuation"; version = "0.2.0"; sha256 = "0qp203qchmllxsrcfz04lxnssrij203i5q8byy159vc8cspd03nq"; - revision = "3"; - editedCabalFile = "1kg8pqm1ry2nm6182ncj17dfgfxvhw7px460b0kx6j6gy3p0r6l9"; + revision = "4"; + editedCabalFile = "1cp14r4i8zv3c93y78d61fxbwn8y2p7fqfp20192xy8zbnn3hdhy"; libraryHaskellDepends = [ base constraints ]; description = "Subtyping relations and variance roles"; license = lib.licenses.asl20; @@ -36839,8 +36769,8 @@ self: { pname = "attenuation-profunctors"; version = "0.1.0"; sha256 = "11zhh9iwb7r2jfp9bn8bqx1wzl4mln9v80gb2jijp0rryag25ili"; - revision = "1"; - editedCabalFile = "1y3if7w1r6lcr7287svb55pnmhhxrgl7yc906nnwr5qijbabsyvs"; + revision = "2"; + editedCabalFile = "1vwavg3c478r36qv1sz800b689cmpmldn3lyr9jl0ag1vmrff6y6"; libraryHaskellDepends = [ attenuation base constraints profunctors ]; @@ -37046,8 +36976,8 @@ self: { }: mkDerivation { pname = "attoparsec-data"; - version = "1.0.5.2"; - sha256 = "05x7xij5jyfzcl0hyjjw4lxlzgkmi55q48s5vbgvba48a2crv0qj"; + version = "1.0.5.3"; + sha256 = "00clpsv9ggkz34csdwx17fhz6sirvy71g897fwi33qzdv7sb2fx0"; libraryHaskellDepends = [ attoparsec attoparsec-time base bytestring scientific text time uuid @@ -37318,6 +37248,7 @@ self: { ]; description = "Interchange with the Audacity sound signal editor"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "audiovisual" = callPackage @@ -37708,8 +37639,6 @@ self: { ]; description = "Autodocodec interpreters for yaml"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "autoexporter" = callPackage @@ -38165,8 +38094,6 @@ self: { ]; description = "Avro serialization support for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "avro-piper" = callPackage @@ -38329,6 +38256,8 @@ self: { pname = "aws-arn"; version = "0.3.0.0"; sha256 = "042lzvm1wpdqfrmgl1ygqgkdisvjyf9jfg9aqnibwhk2pw354dj3"; + revision = "1"; + editedCabalFile = "15l89gbz5lzc5v9v872cqdjkvpkiamx4qa6zpl6l4j8b24wkrcay"; libraryHaskellDepends = [ base deriving-compat hashable profunctors tagged text ]; @@ -38348,32 +38277,6 @@ self: { }: mkDerivation { pname = "aws-cloudfront-signed-cookies"; - version = "0.2.0.10"; - sha256 = "1mzsg6wfzgiippl8kw54m16i1m7zxwfqfwx3wbb3m372pg4h9sza"; - revision = "5"; - editedCabalFile = "1d9zsm2y08mzgr25wk3bf1laz918vbjvrfh7kc56r1naiqqprj74"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty asn1-encoding asn1-types base base64-bytestring - bytestring cookie cryptonite lens lens-aeson optparse-applicative - pem text time vector - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ base hedgehog neat-interpolation ]; - description = "Generate signed cookies for AWS CloudFront"; - license = lib.licenses.mit; - mainProgram = "aws-cloudfront-signed-cookies"; - }) {}; - - "aws-cloudfront-signed-cookies_0_2_0_11" = callPackage - ({ mkDerivation, aeson, aeson-pretty, asn1-encoding, asn1-types - , base, base64-bytestring, bytestring, cookie, cryptonite, hedgehog - , lens, lens-aeson, neat-interpolation, optparse-applicative, pem - , text, time, vector - }: - mkDerivation { - pname = "aws-cloudfront-signed-cookies"; version = "0.2.0.11"; sha256 = "018a3q443h19pbcc178ns7zdmsdd3pz8ww3yfixrhr4jfghws3r9"; revision = "4"; @@ -38389,7 +38292,6 @@ self: { testHaskellDepends = [ base hedgehog neat-interpolation ]; description = "Generate signed cookies for AWS CloudFront"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "aws-cloudfront-signed-cookies"; }) {}; @@ -39968,6 +39870,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "barbies_2_0_4_0" = callPackage + ({ mkDerivation, base, distributive, QuickCheck, tasty, tasty-hunit + , tasty-quickcheck, transformers + }: + mkDerivation { + pname = "barbies"; + version = "2.0.4.0"; + sha256 = "0v8bckxi58fkqgf1i1xd3100wp792pzd319xlfvmmw8z0ii1g872"; + libraryHaskellDepends = [ base distributive transformers ]; + testHaskellDepends = [ + base distributive QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + description = "Classes for working with types that can change clothes"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "barbies-layered" = callPackage ({ mkDerivation, barbies, base, doctest, doctest-discover, hspec , hspec-discover, transformers @@ -40147,19 +40066,6 @@ self: { }) {}; "base-compat" = callPackage - ({ mkDerivation, base, unix }: - mkDerivation { - pname = "base-compat"; - version = "0.11.2"; - sha256 = "1nyvkaij4m01jndw72xl8931czz1xp6jpnynpajabys2ahabb9jk"; - revision = "1"; - editedCabalFile = "0h6vr19vr5bhm69w8rvswbvd4xgazggkcq8vz934x69www2cpgri"; - libraryHaskellDepends = [ base unix ]; - description = "A compatibility layer for base"; - license = lib.licenses.mit; - }) {}; - - "base-compat_0_12_2" = callPackage ({ mkDerivation, base, ghc-prim, unix }: mkDerivation { pname = "base-compat"; @@ -40168,25 +40074,9 @@ self: { libraryHaskellDepends = [ base ghc-prim unix ]; description = "A compatibility layer for base"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "base-compat-batteries" = callPackage - ({ mkDerivation, base, base-compat, hspec, hspec-discover - , QuickCheck - }: - mkDerivation { - pname = "base-compat-batteries"; - version = "0.11.2"; - sha256 = "08rh9nlm9ir28fm42xim06ga8qwdqdcvkbb5ckz99bwnmajndq1i"; - libraryHaskellDepends = [ base base-compat ]; - testHaskellDepends = [ base hspec QuickCheck ]; - testToolDepends = [ hspec-discover ]; - description = "base-compat with extra batteries"; - license = lib.licenses.mit; - }) {}; - - "base-compat-batteries_0_12_2" = callPackage ({ mkDerivation, base, base-compat, ghc-prim, hspec, hspec-discover , QuickCheck }: @@ -40199,7 +40089,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "base-compat with extra batteries"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "base-compat-migrate" = callPackage @@ -40331,10 +40220,8 @@ self: { }: mkDerivation { pname = "base16"; - version = "0.3.2.0"; - sha256 = "149kpmx63b8bmlwjpldkxxb4ldf28qz4h4i3ars6dwlyhzxg6qav"; - revision = "1"; - editedCabalFile = "0jlynzbrd9bl7gdnh4hwnf5b4s90yy0jjfr5zg5pw720lb4601y3"; + version = "0.3.2.1"; + sha256 = "0ybmcik5nlly7s9bfwlaqqk8jpgwxp5ac4bhdiq4lckbfynvm0qf"; libraryHaskellDepends = [ base bytestring deepseq primitive text text-short ]; @@ -40396,6 +40283,8 @@ self: { ]; description = "Optics for the Base16 library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "base32" = callPackage @@ -40449,6 +40338,8 @@ self: { ]; description = "Optics for the Base32 library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "base32-z-bytestring" = callPackage @@ -40541,14 +40432,15 @@ self: { "base62" = callPackage ({ mkDerivation, base, bytebuild, byteslice, doctest , natural-arithmetic, primitive, tasty, tasty-hunit - , tasty-quickcheck, wide-word + , tasty-quickcheck, wide-word, word-compat }: mkDerivation { pname = "base62"; - version = "0.1.0.1"; - sha256 = "0jfxbg9il8wiaaxdxjkp5kk6jph2b12qi9aiilb1y23h67lxmh2h"; + version = "0.1.0.2"; + sha256 = "14jjh2c5fhdjq7bwy3i3yff1mihmixjfs36fa8l9w0qvgpdl01qp"; libraryHaskellDepends = [ base bytebuild byteslice natural-arithmetic primitive wide-word + word-compat ]; testHaskellDepends = [ base byteslice doctest primitive tasty tasty-hunit tasty-quickcheck @@ -40589,18 +40481,18 @@ self: { "base64-bytes" = callPackage ({ mkDerivation, base, base64, base64-bytestring, byte-order , bytebuild, byteslice, bytestring, gauge, natural-arithmetic - , primitive, random, run-st, small-bytearray-builder + , primitive, random, run-st, word-compat }: mkDerivation { pname = "base64-bytes"; - version = "0.1.0.0"; - sha256 = "1h6hy4vqhramad2qbz91qirvc9vs2n67ni8qwagmimx0n4ds4w07"; + version = "0.1.1.0"; + sha256 = "0f0a0lj6k4k5b2mk9fbdl28x09h3mah5j44sj04k4ckdifkx3qw3"; libraryHaskellDepends = [ base byte-order bytebuild byteslice natural-arithmetic primitive - run-st + run-st word-compat ]; testHaskellDepends = [ - base byteslice natural-arithmetic primitive small-bytearray-builder + base bytebuild byteslice natural-arithmetic primitive ]; benchmarkHaskellDepends = [ base base64 base64-bytestring byteslice bytestring gauge primitive @@ -40608,7 +40500,6 @@ self: { ]; description = "Base64 encoding of byte sequences"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "base64-bytestring" = callPackage @@ -40688,6 +40579,8 @@ self: { ]; description = "Optics for the Base64 library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "base64-string" = callPackage @@ -41176,6 +41069,7 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Compute number of possible arrangements in the battleship game"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "battleship-combinatorics"; }) {}; @@ -41317,7 +41211,6 @@ self: { ]; description = "Language tags as specified by BCP 47"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "bcp47-orphans" = callPackage @@ -41337,7 +41230,6 @@ self: { ]; description = "BCP47 orphan instances"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "bcrypt" = callPackage @@ -41513,26 +41405,28 @@ self: { ({ mkDerivation, aeson, base, beam-core, beam-postgres, bytestring , containers, criterion, deepseq, dlist , gargoyle-postgresql-connect, microlens, mtl, postgresql-simple - , pretty-simple, QuickCheck, quickcheck-instances, resource-pool - , scientific, splitmix, string-conv, tasty, tasty-quickcheck, text - , time, transformers, uuid, vector + , postgresql-syntax, pretty-simple, QuickCheck + , quickcheck-instances, resource-pool, scientific, splitmix + , string-conv, syb, tasty, tasty-quickcheck, text, time + , transformers, uuid, vector }: mkDerivation { pname = "beam-automigrate"; - version = "0.1.2.0"; - sha256 = "1y7i553zwm46k39k72l400rh2g8k6k2crjj2wdmkn9nndv1x7545"; + version = "0.1.3.0"; + sha256 = "04ihkc2zdflvsz4b94q6kf806hdaxin5gl1h4avp4lbjwzcjqvif"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base beam-core beam-postgres bytestring containers deepseq - dlist microlens mtl postgresql-simple pretty-simple QuickCheck - quickcheck-instances scientific splitmix string-conv text time - transformers uuid vector + dlist gargoyle-postgresql-connect microlens mtl postgresql-simple + pretty-simple QuickCheck quickcheck-instances resource-pool + scientific splitmix string-conv tasty text time transformers uuid + vector ]; executableHaskellDepends = [ aeson base beam-core beam-postgres bytestring containers - gargoyle-postgresql-connect postgresql-simple resource-pool text - time + postgresql-simple postgresql-syntax pretty-simple QuickCheck syb + tasty tasty-quickcheck text time ]; testHaskellDepends = [ base containers pretty-simple QuickCheck tasty tasty-quickcheck @@ -41542,6 +41436,7 @@ self: { base beam-postgres bytestring containers criterion deepseq postgresql-simple QuickCheck splitmix ]; + doHaddock = false; description = "DB migration library for beam, targeting Postgres"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; @@ -42127,6 +42022,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "berp"; + broken = true; }) {}; "bert" = callPackage @@ -42213,22 +42109,22 @@ self: { }) {}; "betris" = callPackage - ({ mkDerivation, ansi-terminal, base, containers, lens, linear - , optparse-applicative, random, stm, time-units, vty + ({ mkDerivation, ansi-terminal, base, containers, linear, microlens + , microlens-th, optparse-applicative, random, stm, time-units, vty }: mkDerivation { pname = "betris"; - version = "0.2.2.0"; - sha256 = "0ch0gm2fpzga0mqc8n8hdhs5qjfrcm5jxcyqgskwgq1y5jf60ifl"; + version = "0.2.3.0"; + sha256 = "0nqwz88hfhfrcfdd3224cc54yzdqz8hgq358pxyvp5im006didcx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-terminal base containers lens linear optparse-applicative - random stm time-units vty + ansi-terminal base containers linear microlens microlens-th + optparse-applicative random stm time-units vty ]; executableHaskellDepends = [ - ansi-terminal base containers lens linear optparse-applicative - random stm time-units vty + ansi-terminal base containers linear microlens microlens-th + optparse-applicative random stm time-units vty ]; description = "A horizontal version of tetris for braille users"; license = lib.licenses.bsd3; @@ -42305,7 +42201,6 @@ self: { ]; description = "Implementation of the BGAPI serial protocol"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "bglibtest"; }) {}; @@ -42356,9 +42251,7 @@ self: { ]; description = "Simple terminal GUI for local hoogle"; license = "(BSD-3-Clause OR Apache-2.0)"; - hydraPlatforms = lib.platforms.none; mainProgram = "bhoogle"; - broken = true; }) {}; "bibdb" = callPackage @@ -42471,7 +42364,6 @@ self: { description = "Prototype Implementation of Combining Syntactic and Semantic Bidirectionalization (ICFP'10)"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "bidispec" = callPackage @@ -42521,8 +42413,8 @@ self: { }: mkDerivation { pname = "bifunctors"; - version = "5.5.13"; - sha256 = "1myvlzxk9xrm6vf9863wnv8py3ccgfxqxyc0sqxz0v3rwfnjgk16"; + version = "5.5.14"; + sha256 = "0r4jd4s66xvnx0bk75rz0cwnf6cr0lgx3dxrqdv3ppkwqk81c0ak"; libraryHaskellDepends = [ base base-orphans comonad containers tagged template-haskell th-abstraction transformers @@ -42674,24 +42566,6 @@ self: { }: mkDerivation { pname = "bimap"; - version = "0.4.0"; - sha256 = "1794iykd7rhj29y0w4vyjyn6wnw28hi8sxzvm1j5ivdzmf39d8yi"; - revision = "1"; - editedCabalFile = "111wyqh17a6pkjhyaz8n1891m69hwr2gybqcpacw4xdmarxmi7f5"; - libraryHaskellDepends = [ base containers deepseq exceptions ]; - testHaskellDepends = [ - base containers deepseq exceptions QuickCheck template-haskell - ]; - description = "Bidirectional mapping between two key types"; - license = lib.licenses.bsd3; - }) {}; - - "bimap_0_5_0" = callPackage - ({ mkDerivation, base, containers, deepseq, exceptions, QuickCheck - , template-haskell - }: - mkDerivation { - pname = "bimap"; version = "0.5.0"; sha256 = "158cdwk9jwklcfgbn62dqq255i40w13ifggsdps87sxc5q7lpd5h"; libraryHaskellDepends = [ base containers deepseq exceptions ]; @@ -42700,7 +42574,6 @@ self: { ]; description = "Bidirectional mapping between two key types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "bimap-server" = callPackage @@ -43034,8 +42907,6 @@ self: { ]; description = "Read and write values of types that implement Binary"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "binary-list" = callPackage @@ -43076,7 +42947,7 @@ self: { pname = "binary-orphans"; version = "1.0.3"; sha256 = "0b302hhjaybwbnpzrd8qmdp24g2xj2svib34zfxqqxg67j159rg2"; - libraryHaskellDepends = [ base binary OneTuple transformers ]; + libraryHaskellDepends = [ base binary transformers ]; testHaskellDepends = [ base binary OneTuple QuickCheck quickcheck-instances tagged tasty tasty-quickcheck @@ -43130,6 +43001,8 @@ self: { ]; description = "Extends binary with parsec/attoparsec style parsing combinators"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "binary-protocol" = callPackage @@ -43260,6 +43133,8 @@ self: { testHaskellDepends = [ base bytestring ]; description = "Binary deserialisation using strict ByteStrings"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "binary-tagged" = callPackage @@ -44309,6 +44184,7 @@ self: { description = "Encode precise binary representations directly in types"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bins" = callPackage @@ -44327,8 +44203,6 @@ self: { ]; description = "Aggregate continuous values into discrete bins"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "binsm" = callPackage @@ -44346,7 +44220,9 @@ self: { ]; description = "binary files splitter and merger"; license = "unknown"; + hydraPlatforms = lib.platforms.none; mainProgram = "binsm"; + broken = true; }) {}; "bio" = callPackage @@ -44597,6 +44473,8 @@ self: { pname = "bip32"; version = "0.2"; sha256 = "1ji71m6mdnhqscadrmxs4pwb18cc5j91dhlnqs3d76gk32fyy32q"; + revision = "1"; + editedCabalFile = "0069h82abfgy824zpkdfljwm2y6g7hm5q7yjxrrc08abdn72dkg2"; libraryHaskellDepends = [ base base58-bytestring binary bitcoin-hash bitcoin-keys bytestring ]; @@ -44677,6 +44555,8 @@ self: { testHaskellDepends = [ base ]; description = "Birds of Paradise"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bisc" = callPackage @@ -44701,25 +44581,24 @@ self: { }) {}; "biscuit-haskell" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring - , base64, bytestring, cereal, containers, criterion, cryptonite - , lens, lens-aeson, memory, mtl, parser-combinators, protobuf - , random, regex-tdfa, tasty, tasty-hunit, template-haskell, text + ({ mkDerivation, aeson, async, base, base16, base64, bytestring + , cereal, containers, criterion, cryptonite, lens, lens-aeson + , megaparsec, memory, mtl, parser-combinators, protobuf, random + , regex-tdfa, tasty, tasty-hunit, template-haskell, text , th-lift-instances, time, validation-selective }: mkDerivation { pname = "biscuit-haskell"; - version = "0.2.1.0"; - sha256 = "12c5cl3gc0518b7vrzc0v56ch8rlsc5xvdmhj8lxr085xm16dqng"; + version = "0.3.0.0"; + sha256 = "07n5s6rlalxq12ha8fk8j2ghq015p56n23pdp4y5ba3ax58lgg9b"; libraryHaskellDepends = [ - async attoparsec base base16-bytestring base64 bytestring cereal - containers cryptonite memory mtl parser-combinators protobuf random - regex-tdfa template-haskell text th-lift-instances time - validation-selective + async base base16 base64 bytestring cereal containers cryptonite + megaparsec memory mtl parser-combinators protobuf random regex-tdfa + template-haskell text th-lift-instances time validation-selective ]; testHaskellDepends = [ - aeson async attoparsec base base16-bytestring base64 bytestring - cereal containers cryptonite lens lens-aeson mtl parser-combinators + aeson async base base16 base64 bytestring cereal containers + cryptonite lens lens-aeson megaparsec mtl parser-combinators protobuf random tasty tasty-hunit template-haskell text th-lift-instances time validation-selective ]; @@ -44737,13 +44616,13 @@ self: { }: mkDerivation { pname = "biscuit-servant"; - version = "0.2.1.0"; - sha256 = "1sw496bfvh5kfyb1f0sczjayb5b2vq14x2vdmww99knjjvn0ibxp"; + version = "0.3.0.0"; + sha256 = "1dky9skcfd25pf0plfd5x7framqsvw98ab96xxmnsy6825h6qazd"; libraryHaskellDepends = [ base biscuit-haskell bytestring mtl servant-server text wai ]; testHaskellDepends = [ - base biscuit-haskell bytestring hspec http-client servant + base biscuit-haskell bytestring hspec http-client mtl servant servant-client servant-client-core servant-server text time warp ]; description = "Servant support for the Biscuit security token"; @@ -45165,7 +45044,6 @@ self: { ]; description = "Resources for working with miniscript, and script descriptors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "bitcoin-tx" = callPackage @@ -45520,6 +45398,8 @@ self: { ]; description = "Fast, packed, strict and lazy bit streams with stream fusion"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bitstring" = callPackage @@ -45616,8 +45496,8 @@ self: { pname = "bitwise"; version = "1.0.0.1"; sha256 = "03xyzdkyb99gvm9g5chl07rqbnm7qrxba7wgmrfmal0rkwm0ibkn"; - revision = "5"; - editedCabalFile = "0qfg5kwpavyikgyazwz8mwaykw5j6f3b1i5m0khdja4jbb3f1h04"; + revision = "6"; + editedCabalFile = "0m4swiml8zggzvwzip2yw77y6crhf10a7imy6fj5yq0b9vd2mqkf"; libraryHaskellDepends = [ array base bytestring ]; testHaskellDepends = [ base QuickCheck ]; benchmarkHaskellDepends = [ array base bytestring criterion ]; @@ -45984,6 +45864,7 @@ self: { ]; description = "Auto-generated interface to Fortran BLAS via comfort-array"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "blas-ffi" = callPackage @@ -46191,7 +46072,6 @@ self: { description = "Some contributions to add handy things to blaze html"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "blaze-html-hexpat" = callPackage @@ -47053,7 +46933,6 @@ self: { ]; description = "Generate CSV Exports of Your BNB Staking Rewards"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "bnb-staking-csvs"; }) {}; @@ -47102,6 +46981,7 @@ self: { ]; description = "Three games for inclusion in a web server"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "board-games"; }) {}; @@ -47413,7 +47293,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "readme"; - broken = true; }) {}; "bookkeeper-permissions" = callPackage @@ -47495,6 +47374,8 @@ self: { ]; description = "Logical combinatory operations dealing with datatypes representing booleans by their constructors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "boolean-list" = callPackage @@ -47634,6 +47515,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "boomerang_1_4_8_1" = callPackage + ({ mkDerivation, base, mtl, semigroups, template-haskell, text + , th-abstraction + }: + mkDerivation { + pname = "boomerang"; + version = "1.4.8.1"; + sha256 = "1hal4z1c1skqjq7vvjql0gm2rhfgrrlj29rgchjwlr2hm22zgnjp"; + libraryHaskellDepends = [ + base mtl semigroups template-haskell text th-abstraction + ]; + description = "Library for invertible parsing and printing"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "boomslang" = callPackage ({ mkDerivation, base, containers, data-accessor , data-accessor-template, font-opengl-basic4x6, GLFW-b, MonadRandom @@ -47688,7 +47585,6 @@ self: { ]; description = "Mathematically sound sound synthesis"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "perfprof"; }) {}; @@ -47728,7 +47624,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "demo-app"; - broken = true; }) {}; "boots-cloud" = callPackage @@ -47871,22 +47766,22 @@ self: { }) {}; "borsh" = callPackage - ({ mkDerivation, base, bytestring, containers, generics-sop, memory + ({ mkDerivation, base, bytestring, containers, generics-sop , optics-core, profunctors, QuickCheck, quickcheck-instances , sop-core, tasty, tasty-quickcheck, text, vector, wide-word }: mkDerivation { pname = "borsh"; - version = "0.1.0"; - sha256 = "0nyv91sn2v8m1zlp789v85dm9n21k9gb532rkzhdds5fpvqa6w3z"; + version = "0.2.0"; + sha256 = "0jvyjv7wg8a9f4wncxh3ddrqhnk7wdj45fyz29arnfj4hwdqijj3"; libraryHaskellDepends = [ - base bytestring containers generics-sop memory sop-core text vector + base bytestring containers generics-sop sop-core text vector wide-word ]; testHaskellDepends = [ base bytestring containers generics-sop optics-core profunctors QuickCheck quickcheck-instances sop-core tasty tasty-quickcheck - text + text wide-word ]; description = "Implementation of BORSH serialisation"; license = lib.licenses.bsd3; @@ -47916,6 +47811,7 @@ self: { libraryHaskellDepends = [ base semigroups zero ]; description = "Like Maybe, but with a different Monoid instance"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "botpp" = callPackage @@ -48075,8 +47971,6 @@ self: { libraryHaskellDepends = [ base lens ]; description = "A generic boundingbox for an arbitrary vector"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "bower-json_1_0_0_1" = callPackage @@ -48135,7 +48029,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "bowntz"; - broken = true; }) {}; "box" = callPackage @@ -48415,8 +48308,8 @@ self: { }: mkDerivation { pname = "breakpoint"; - version = "0.1.1.1"; - sha256 = "1hyfsn4wgiz2zzlihncq9lj18k7nzd4wq2z53xbnp1palspjqjp2"; + version = "0.1.2.0"; + sha256 = "1hk9mjijxvqjzcfqllzi53rmxiyggbxash05jbb742wrq832h2xw"; libraryHaskellDepends = [ ansi-terminal base containers ghc haskeline mtl pretty-simple template-haskell text transformers @@ -48466,7 +48359,7 @@ self: { broken = true; }) {}; - "brick" = callPackage + "brick_0_70_1" = callPackage ({ mkDerivation, base, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, dlist, exceptions , filepath, microlens, microlens-mtl, microlens-th, QuickCheck, stm @@ -48475,8 +48368,8 @@ self: { }: mkDerivation { pname = "brick"; - version = "0.68.1"; - sha256 = "17pzp9p4rmd82smxwz2kh1jjd5ssy5b86jnv7a4ac1g1zgnnki0r"; + version = "0.70.1"; + sha256 = "18i1i06ll6pklzaazcl2bzbi3w5zdn43l9wvkclhfcmddjy19lp4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -48490,36 +48383,37 @@ self: { ]; description = "A declarative terminal user interface library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; - "brick_0_70_1" = callPackage - ({ mkDerivation, base, bytestring, config-ini, containers - , contravariant, data-clist, deepseq, directory, dlist, exceptions - , filepath, microlens, microlens-mtl, microlens-th, QuickCheck, stm - , template-haskell, text, text-zipper, transformers, unix, vector - , vty, word-wrap + "brick_1_3" = callPackage + ({ mkDerivation, base, bimap, bytestring, config-ini, containers + , contravariant, data-clist, deepseq, directory, exceptions + , filepath, microlens, microlens-mtl, microlens-th, mtl, QuickCheck + , stm, template-haskell, text, text-zipper, unix, vector, vty + , word-wrap }: mkDerivation { pname = "brick"; - version = "0.70.1"; - sha256 = "18i1i06ll6pklzaazcl2bzbi3w5zdn43l9wvkclhfcmddjy19lp4"; + version = "1.3"; + sha256 = "0lpd6685ya0va0a6n7cw70f5b1s13y8ynzac0gkxyqb1ivzj0hsb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base bytestring config-ini containers contravariant data-clist - deepseq directory dlist exceptions filepath microlens microlens-mtl - microlens-th stm template-haskell text text-zipper transformers - unix vector vty word-wrap + base bimap bytestring config-ini containers contravariant + data-clist deepseq directory exceptions filepath microlens + microlens-mtl microlens-th mtl stm template-haskell text + text-zipper unix vector vty word-wrap ]; testHaskellDepends = [ - base containers microlens QuickCheck vector + base containers microlens QuickCheck vector vty ]; description = "A declarative terminal user interface library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; - "brick_1_3" = callPackage + "brick" = callPackage ({ mkDerivation, base, bimap, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, exceptions , filepath, microlens, microlens-mtl, microlens-th, mtl, QuickCheck @@ -48528,8 +48422,8 @@ self: { }: mkDerivation { pname = "brick"; - version = "1.3"; - sha256 = "0lpd6685ya0va0a6n7cw70f5b1s13y8ynzac0gkxyqb1ivzj0hsb"; + version = "1.4"; + sha256 = "12gwwqq38x0k6hjcn72dpcdwi0lrvyy8gxmp884h22l73xa4vda6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -48543,10 +48437,9 @@ self: { ]; description = "A declarative terminal user interface library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; - "brick_1_4" = callPackage + "brick_1_5" = callPackage ({ mkDerivation, base, bimap, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, exceptions , filepath, microlens, microlens-mtl, microlens-th, mtl, QuickCheck @@ -48555,8 +48448,8 @@ self: { }: mkDerivation { pname = "brick"; - version = "1.4"; - sha256 = "12gwwqq38x0k6hjcn72dpcdwi0lrvyy8gxmp884h22l73xa4vda6"; + version = "1.5"; + sha256 = "0kszp6yrpqc9v87m38rladhmn8xcdbrrh05xr6fi936n34bhi432"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -48610,6 +48503,8 @@ self: { free vector vty ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "brick-panes" = callPackage @@ -48618,8 +48513,8 @@ self: { }: mkDerivation { pname = "brick-panes"; - version = "1.0.0.2"; - sha256 = "1g6q9pnc0a0fnp2qaxqxp8qdriifi6w362ky36csxl633nl6gsw0"; + version = "1.0.0.3"; + sha256 = "0qqm896gyabdscngafgmf4avajs5szds1l6fs0bw2p11xiirhc14"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base brick containers microlens vty ]; @@ -48630,9 +48525,7 @@ self: { testHaskellDepends = [ base ]; description = "Panes library for Brick providing composition and isolation for TUI apps"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; mainProgram = "mywork-example"; - broken = true; }) {}; "brick-skylighting" = callPackage @@ -48650,6 +48543,8 @@ self: { ]; description = "Show syntax-highlighted text in your Brick UI"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "brick-skylighting_1_0" = callPackage @@ -48668,6 +48563,7 @@ self: { description = "Show syntax-highlighted text in your Brick UI"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bricks" = callPackage @@ -48883,6 +48779,7 @@ self: { ]; description = "Haskell source code formatter"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "brittany"; }) {}; @@ -48920,6 +48817,7 @@ self: { ]; description = "Conduit-based parallel streaming code for broadcast-chan"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "broadcast-chan-pipes" = callPackage @@ -48938,6 +48836,7 @@ self: { ]; description = "Pipes-based parallel streaming code for broadcast-chan"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "broadcast-chan-tests" = callPackage @@ -48962,6 +48861,8 @@ self: { ]; description = "Helpers for generating tests for broadcast-chan"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "broccoli" = callPackage @@ -49374,7 +49275,6 @@ self: { description = "A backend agnostic, concurrent BTree"; license = "LGPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "btrfs" = callPackage @@ -49728,10 +49628,8 @@ self: { }: mkDerivation { pname = "bugzilla-redhat"; - version = "1.0.0"; - sha256 = "1g95j03y2sg1fwdf48a05nijqllkd0m7scn1wbfyzvb57q716hlx"; - revision = "5"; - editedCabalFile = "13fmsnvjgg2hh5hqr5mvyykafpf770lrwiq7g67i75w6594nippn"; + version = "1.0.1"; + sha256 = "19dir39yxqd5psf3gj4f3vhcbdad1np7374nkxfk0gg4xxvywcvi"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -50052,6 +49950,7 @@ self: { description = "Haskell interface to the Bus Pirate binary interface"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "buster" = callPackage @@ -50162,6 +50061,7 @@ self: { ]; description = "Chops a command or program invocation into digestable pieces"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "butter" = callPackage @@ -50315,6 +50215,7 @@ self: { ]; description = "a bitvector datatype that is parameterized by the vector width"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "bv-sized-lens" = callPackage @@ -50326,6 +50227,7 @@ self: { libraryHaskellDepends = [ base bv-sized lens parameterized-utils ]; description = "Well-typed lenses for bv-sized bitvectors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "by-other-names" = callPackage @@ -50334,8 +50236,8 @@ self: { }: mkDerivation { pname = "by-other-names"; - version = "1.2.1.0"; - sha256 = "1l6b47qxr8hidknl2r7gwp9civlz450z4nxyv98nfkh86bhsdnfm"; + version = "1.2.3.0"; + sha256 = "1hr3r18i0vi86pdcwdlj6116m58bkpyd1x2r4rhf4yv2lsak7sb7"; libraryHaskellDepends = [ aeson base indexed-traversable template-haskell text ]; @@ -50447,8 +50349,8 @@ self: { }: mkDerivation { pname = "bytebuild"; - version = "0.3.11.0"; - sha256 = "0yxss8r5msgbp812xb0k1xsmil02zmh7n8nh7jdfkm8byf3l4saf"; + version = "0.3.12.0"; + sha256 = "0n87jhn46yafnd3kjy07nxs2f36s99xk89x6cwkhiwhvz5hw6c2v"; libraryHaskellDepends = [ base byteslice bytestring haskell-src-meta integer-logarithms natural-arithmetic primitive primitive-offset primitive-unlifted @@ -50628,6 +50530,30 @@ self: { license = lib.licenses.bsd3; }) {}; + "byteslice_0_2_9_0" = callPackage + ({ mkDerivation, base, bytestring, gauge, primitive, primitive-addr + , primitive-unlifted, quickcheck-classes, run-st, tasty + , tasty-hunit, tasty-quickcheck, text, text-short, transformers + , tuples, vector + }: + mkDerivation { + pname = "byteslice"; + version = "0.2.9.0"; + sha256 = "0rqlpqcnyfwl2m4jy8k7n062drdwpvd3j622f4z4fxyhd84dxv5y"; + libraryHaskellDepends = [ + base bytestring primitive primitive-addr primitive-unlifted run-st + text text-short tuples vector + ]; + testHaskellDepends = [ + base bytestring primitive quickcheck-classes tasty tasty-hunit + tasty-quickcheck text transformers + ]; + benchmarkHaskellDepends = [ base gauge primitive ]; + description = "Slicing managed and unmanaged memory"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "bytesmith" = callPackage ({ mkDerivation, base, byte-order, byteslice, bytestring , contiguous, gauge, primitive, run-st, tasty, tasty-hunit @@ -51239,6 +51165,8 @@ self: { librarySystemDepends = [ bzip2 ]; description = "Compression and decompression in the bzip2 format"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) bzip2;}; "bzlib-conduit" = callPackage @@ -51728,10 +51656,8 @@ self: { }: mkDerivation { pname = "cabal-cache"; - version = "1.0.4.0"; - sha256 = "1qh2cy0mwslqfdw747jkvvfbdma0c3mmjd5kpv2s5slz0m7m8l9j"; - revision = "1"; - editedCabalFile = "049x7hz1173650bsqp8ff2yv7gn6v1akl3iz24xx5q8ql1p0silc"; + version = "1.0.5.1"; + sha256 = "02jin436jrbmfsr3n5qfkp95scybnfapls893kvx89ykya44cijg"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -51744,8 +51670,8 @@ self: { executableHaskellDepends = [ aeson amazonka amazonka-core antiope-core antiope-optparse-applicative base bytestring containers directory - exceptions generic-lens http-types lens mtl optparse-applicative - resourcet stm stringsearch temporary text unliftio + generic-lens http-types lens mtl optparse-applicative resourcet stm + stringsearch temporary text unliftio ]; testHaskellDepends = [ aeson antiope-core base bytestring filepath hedgehog hspec @@ -51783,25 +51709,6 @@ self: { }) {}; "cabal-clean" = callPackage - ({ mkDerivation, base, containers, directory, filepath, mtl - , optparse-applicative, pretty-terminal, process, split, string-qq - }: - mkDerivation { - pname = "cabal-clean"; - version = "0.1.20220814"; - sha256 = "10kw1d6gxksgawpklqmjhbdc507zcxsghnf6vjwiv2wikrmz8b0d"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - base containers directory filepath mtl optparse-applicative - pretty-terminal process split string-qq - ]; - description = "Remove outdated cabal build artefacts from `dist-newstyle`"; - license = lib.licenses.bsd3; - mainProgram = "cabal-clean"; - }) {}; - - "cabal-clean_0_2_20220819" = callPackage ({ mkDerivation, base, containers, directory, filemanip, filepath , mtl, optparse-applicative, pretty-terminal, process, silently , split, string-qq @@ -51819,7 +51726,6 @@ self: { ]; description = "Remove outdated cabal build artefacts from `dist-newstyle`"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "cabal-clean"; }) {}; @@ -51872,8 +51778,8 @@ self: { }: mkDerivation { pname = "cabal-debian"; - version = "5.2"; - sha256 = "0vin5nj673l5gyg2q3jjz8vxh6ajja5mh6k81j1ppihwscwmmz4p"; + version = "5.2.1"; + sha256 = "1fz71v2yx3rykvzswvqza5v9jwdhy2ahxj003gkkhfwfc2qjip3p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -51915,8 +51821,6 @@ self: { libraryHaskellDepends = [ base Cabal QuickCheck ]; description = "QuickCheck for Cabal tests"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cabal-dev" = callPackage @@ -52274,7 +52178,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "cabal"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; broken = true; }) {Cabal-QuickCheck = null; Cabal-described = null; Cabal-tree-diff = null;}; @@ -52555,36 +52459,6 @@ self: { }: mkDerivation { pname = "cabal-plan"; - version = "0.7.2.1"; - sha256 = "0n45bakzf1r1nyvs76fmrj0cf74knqnpyb2i82baxia0falbp48r"; - revision = "1"; - editedCabalFile = "1pb8r65f279m9ps67mkkcbcpbprbj7pd12b9m2s64l8fgn9in422"; - configureFlags = [ "-fexe" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base base16-bytestring bytestring containers directory - filepath text - ]; - executableHaskellDepends = [ - ansi-terminal async base base-compat bytestring containers - directory mtl optics-core optparse-applicative parsec process - semialign singleton-bool text these topograph transformers vector - ]; - description = "Library and utility for processing cabal's plan.json file"; - license = lib.licenses.gpl2Plus; - mainProgram = "cabal-plan"; - }) {}; - - "cabal-plan_0_7_2_3" = callPackage - ({ mkDerivation, aeson, ansi-terminal, async, base, base-compat - , base16-bytestring, bytestring, containers, directory, filepath - , mtl, optics-core, optparse-applicative, parsec, process - , semialign, singleton-bool, text, these, topograph, transformers - , vector - }: - mkDerivation { - pname = "cabal-plan"; version = "0.7.2.3"; sha256 = "0zrk1hai7j0kk7l3nv1ca6srzz36dv1rmvzw7zby945nam7030k2"; configureFlags = [ "-fexe" ]; @@ -52601,7 +52475,6 @@ self: { ]; description = "Library and utility for processing cabal's plan.json file"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "cabal-plan"; }) {}; @@ -52945,6 +52818,8 @@ self: { pname = "cabal2json"; version = "0.0.0.0"; sha256 = "19dy7x643243ryqcc4wimz0pm1f1m0bqb0w7as5jhpvnk7rz06zq"; + revision = "1"; + editedCabalFile = "1lxmdh6h2fxqxc275x5a64mwk8kk4kg67gwlsxsjq5ng0rkvpix2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -52997,7 +52872,7 @@ self: { ''; description = "Convert Cabal files into Nix build instructions"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "cabal2spec" = callPackage @@ -53006,29 +52881,6 @@ self: { }: mkDerivation { pname = "cabal2spec"; - version = "2.6.2"; - sha256 = "0x1r01fk5mch76zindalvmlkfaca4y1x89zw2dm0d46fncsfgdrv"; - revision = "1"; - editedCabalFile = "196j1fga9cqlc0nbxbgl0c3g0ic8sf618whps95zzp58lac9dqak"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base Cabal filepath time ]; - executableHaskellDepends = [ - base Cabal filepath optparse-applicative - ]; - testHaskellDepends = [ base Cabal filepath tasty tasty-golden ]; - description = "Convert Cabal files into rpm spec files"; - license = lib.licenses.gpl3Only; - mainProgram = "cabal2spec"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "cabal2spec_2_6_3" = callPackage - ({ mkDerivation, base, Cabal, filepath, optparse-applicative, tasty - , tasty-golden, time - }: - mkDerivation { - pname = "cabal2spec"; version = "2.6.3"; sha256 = "1mxqllc6mbxbyr5iz6qs0sxmvzrn5jf9wbs6zqnlygg23ml043kr"; revision = "1"; @@ -53042,7 +52894,6 @@ self: { testHaskellDepends = [ base Cabal filepath tasty tasty-golden ]; description = "Convert Cabal files into rpm spec files"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "cabal2spec"; maintainers = [ lib.maintainers.peti ]; }) {}; @@ -53348,37 +53199,37 @@ self: { "cachix" = callPackage ({ mkDerivation, aeson, async, base, base64-bytestring, bytestring - , cachix-api, concurrent-extra, conduit, conduit-extra, containers - , cookie, cryptonite, dhall, directory, ed25519, either, extra - , filepath, fsnotify, hercules-ci-cnix-store, here, hspec - , hspec-discover, http-client, http-client-tls, http-conduit - , http-types, inline-c-cpp, katip, lukko, lzma-conduit, megaparsec - , memory, mmorph, netrc, nix, optparse-applicative, pretty-terminal - , prettyprinter, process, protolude, resourcet, retry - , safe-exceptions, servant, servant-auth, servant-auth-client - , servant-client, servant-client-core, servant-conduit, stm - , stm-chans, stm-conduit, systemd, temporary, text, time, unix - , unordered-containers, uri-bytestring, uuid, vector, versions - , websockets, wuss + , cachix-api, concurrent-extra, conduit, conduit-extra + , conduit-zstd, containers, cookie, cryptonite, dhall, directory + , ed25519, either, extra, filepath, fsnotify + , hercules-ci-cnix-store, here, hspec, hspec-discover, http-client + , http-client-tls, http-conduit, http-types, inline-c-cpp, katip + , lukko, lzma-conduit, megaparsec, memory, mmorph, netrc, nix + , optparse-applicative, pretty-terminal, prettyprinter, process + , protolude, resourcet, retry, safe-exceptions, servant + , servant-auth, servant-auth-client, servant-client + , servant-client-core, servant-conduit, stm, stm-chans, stm-conduit + , systemd, temporary, text, time, unix, unordered-containers + , uri-bytestring, uuid, vector, versions, websockets, wuss }: mkDerivation { pname = "cachix"; - version = "1.0.1"; - sha256 = "0jgs43h6pmyyq3r1sc7d27zsdxr5fbimgdvl8r8l1fdw1nlb322q"; + version = "1.1"; + sha256 = "1pqh02jqkd90zxjfyjknavr8zly5yp046ac727klxq2x8gw9hq5r"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring cachix-api - concurrent-extra conduit conduit-extra containers cookie cryptonite - dhall directory ed25519 either extra filepath fsnotify - hercules-ci-cnix-store here http-client http-client-tls + concurrent-extra conduit conduit-extra conduit-zstd containers + cookie cryptonite dhall directory ed25519 either extra filepath + fsnotify hercules-ci-cnix-store here http-client http-client-tls http-conduit http-types inline-c-cpp katip lukko lzma-conduit megaparsec memory mmorph netrc optparse-applicative pretty-terminal prettyprinter process protolude resourcet retry safe-exceptions servant servant-auth servant-auth-client servant-client - servant-client-core servant-conduit stm stm-conduit systemd - temporary text time unix unordered-containers uri-bytestring uuid - vector versions websockets wuss + servant-client-core servant-conduit stm stm-chans stm-conduit + systemd temporary text time unix unordered-containers + uri-bytestring uuid vector versions websockets wuss ]; libraryPkgconfigDepends = [ nix ]; executableHaskellDepends = [ @@ -53387,8 +53238,8 @@ self: { ]; executableToolDepends = [ hspec-discover ]; testHaskellDepends = [ - base cachix-api directory here hspec protolude servant-auth-client - temporary + aeson base bytestring cachix-api dhall directory extra here hspec + protolude servant-auth-client servant-client-core temporary ]; description = "Command line client for Nix binary cache hosting https://cachix.org"; license = lib.licenses.asl20; @@ -53399,22 +53250,23 @@ self: { ({ mkDerivation, aeson, async, base, base16-bytestring, bytestring , conduit, cookie, cryptonite, deepseq, deriving-aeson, exceptions , hspec, hspec-discover, http-api-data, http-media, jose, lens - , memory, nix-narinfo, protolude, resourcet, servant, servant-auth - , servant-auth-swagger, servant-client, servant-swagger - , servant-swagger-ui-core, string-conv, swagger2, text, time - , transformers, unordered-containers, uuid, websockets + , memory, nix-narinfo, protolude, resourcet, safe-exceptions + , servant, servant-auth, servant-auth-swagger, servant-client + , servant-swagger, servant-swagger-ui-core, stm-chans, string-conv + , swagger2, text, time, transformers, unordered-containers, uuid + , websockets }: mkDerivation { pname = "cachix-api"; - version = "1.0.1"; - sha256 = "1bv4pbzqzkfll8zm9qdrwbpj80jgdk5n0jby52j8szkvbj4rd357"; + version = "1.1"; + sha256 = "19zh0znah72mqkb4ns4288wq0y02r4ah0pbfvn68lrc02yjf9bhs"; libraryHaskellDepends = [ aeson async base base16-bytestring bytestring conduit cookie cryptonite deepseq deriving-aeson exceptions http-api-data - http-media jose lens memory nix-narinfo protolude resourcet servant - servant-auth servant-auth-swagger servant-client string-conv - swagger2 text time transformers unordered-containers uuid - websockets + http-media jose lens memory nix-narinfo protolude resourcet + safe-exceptions servant servant-auth servant-auth-swagger + servant-client stm-chans string-conv swagger2 text time + transformers unordered-containers uuid websockets ]; testHaskellDepends = [ aeson base base16-bytestring bytestring conduit cookie cryptonite @@ -53515,7 +53367,6 @@ self: { ]; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cairo" = callPackage @@ -53731,8 +53582,8 @@ self: { }: mkDerivation { pname = "calamity"; - version = "0.7.0.1"; - sha256 = "16hk4c8yry3yrw2isjd2lamdadvfqm210cnpiyllp9lfgn24zdph"; + version = "0.7.1.0"; + sha256 = "17jzv3di73d9pdxcp9fmprkyff1jjkmxywpf1g5a9iq0yc6l3q7f"; libraryHaskellDepends = [ aeson aeson-optics async base bytestring calamity-commands colour concurrent-extra connection containers data-default-class @@ -53745,8 +53596,6 @@ self: { ]; description = "A library for writing discord bots in haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "calamity-commands" = callPackage @@ -53906,29 +53755,6 @@ self: { }) {}; "call-alloy" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, extra - , file-embed, filepath, hashable, hspec, mtl, process, split - , trifecta, unix - }: - mkDerivation { - pname = "call-alloy"; - version = "0.3.0.3"; - sha256 = "1clzw0sk13gzwk2ikxlz7p0f70pb2246pnd01ggjm0nrfykri18p"; - libraryHaskellDepends = [ - base bytestring containers directory extra file-embed filepath - hashable mtl process split trifecta unix - ]; - testHaskellDepends = [ - base bytestring containers directory extra file-embed filepath - hashable hspec mtl process split trifecta unix - ]; - description = "A simple library to call Alloy given a specification"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "call-alloy_0_4_0_1" = callPackage ({ mkDerivation, async, base, bytestring, containers, directory , extra, filepath, hspec, mtl, process, split, transformers , trifecta, unix @@ -54066,7 +53892,6 @@ self: { badPlatforms = [ "aarch64-linux" ]; hydraPlatforms = lib.platforms.none; mainProgram = "camfort"; - broken = true; }) {inherit (pkgs) flint;}; "camh" = callPackage @@ -54126,8 +53951,8 @@ self: { }: mkDerivation { pname = "candid"; - version = "0.3.2"; - sha256 = "0p4fxkm3yhlx52g15hcbjlhqmx7nwkdw0rzlr0m11v85y5khz7yd"; + version = "0.4"; + sha256 = "17l3qyprkn4ffnpxxh1359f61f4qpbmbxwaclxiqr8aahjsk2d2z"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -54196,8 +54021,6 @@ self: { benchmarkHaskellDepends = [ base bytestring containers criterion ]; description = "Canonical JSON for signing and hashing JSON values"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "canteven-config" = callPackage @@ -54421,6 +54244,8 @@ self: { ]; description = "OTP-like supervision trees in Haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "capnp" = callPackage @@ -54591,7 +54416,6 @@ self: { description = "A package for integrating a variety of captcha solving services"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "car-pool" = callPackage @@ -54913,6 +54737,8 @@ self: { ]; description = "CASA Abbreviations and Acronyms"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "casa-client" = callPackage @@ -55163,15 +54989,13 @@ self: { }: mkDerivation { pname = "cases"; - version = "0.1.4.1"; - sha256 = "16bl4qzjfwkbzacrj33myakqcmg2j9fgzdnykwpnnqc2vikdpn0z"; + version = "0.1.4.2"; + sha256 = "0sla22xr1b8b1655l2rzhy31lxirahypgri0bphd9l6jy874mr40"; libraryHaskellDepends = [ attoparsec base text ]; testHaskellDepends = [ HTF HUnit QuickCheck rerebase ]; benchmarkHaskellDepends = [ gauge mwc-random rerebase ]; description = "A converter for spinal, snake and camel cases"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cash" = callPackage @@ -55398,6 +55222,7 @@ self: { description = "Haskell client for Cassandra's CQL protocol"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cassandra-thrift" = callPackage @@ -55799,6 +55624,8 @@ self: { libraryHaskellDepends = [ base bytestring comonad text ]; description = "Highbrow approach to type-safe printf format specifications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "category-traced" = callPackage @@ -55930,27 +55757,6 @@ self: { }: mkDerivation { pname = "cayley-client"; - version = "0.4.17"; - sha256 = "1mc4r45vlwbrcjz33akqs5kh27wc97b8dg1byanvyjyvsvabg5bb"; - libraryHaskellDepends = [ - aeson attoparsec base binary bytestring exceptions http-client - http-conduit lens lens-aeson mtl text transformers - unordered-containers vector - ]; - testHaskellDepends = [ aeson base hspec unordered-containers ]; - description = "A Haskell client for the Cayley graph database"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "cayley-client_0_4_19_2" = callPackage - ({ mkDerivation, aeson, attoparsec, base, binary, bytestring - , exceptions, hspec, http-client, http-conduit, lens, lens-aeson - , mtl, text, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "cayley-client"; version = "0.4.19.2"; sha256 = "0p8s4r4wgscqll2jd1k3plfq8v89jf344vq5bz5fg9r66kbryjxs"; libraryHaskellDepends = [ @@ -56756,6 +56562,8 @@ self: { ]; description = "A library for writing CGI programs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cgi-undecidable" = callPackage @@ -56767,6 +56575,7 @@ self: { libraryHaskellDepends = [ base cgi mtl ]; description = "Undecidable instances for the cgi package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "cgi-utils" = callPackage @@ -56781,7 +56590,6 @@ self: { description = "Simple modular utilities for CGI/FastCGI (sessions, etc.)"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cgrep" = callPackage @@ -56841,26 +56649,33 @@ self: { }) {}; "chainweb-mining-client" = callPackage - ({ mkDerivation, aeson, async, base, bytes, bytestring, Cabal - , configuration-tools, connection, containers, cryptonite - , exceptions, hashable, hostaddress, http-client, http-client-tls - , http-types, lens, loglevel, memory, mwc-random, process, retry - , stm, streaming, streaming-events, text, time + ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring + , bytes, bytestring, Cabal, clock, configuration-tools, connection + , cryptonite, exceptions, hashable, hostaddress, http-client + , http-client-tls, http-types, lens, loglevel, memory, mwc-random + , process, QuickCheck, quickcheck-instances, retry, stm, streaming + , streaming-commons, streaming-events, sydtest, text, time , unordered-containers, wai-extra }: mkDerivation { pname = "chainweb-mining-client"; - version = "0.2"; - sha256 = "1zbqbc3icgz1fb0fgpfi1cf1i7pz2lf3wd82671ks1yixf893ypm"; + version = "0.5"; + sha256 = "1z14rkla1w01pzv894wba8kp1v5zwmzgjnadjkwczvfc9fk6i90h"; isLibrary = false; isExecutable = true; setupHaskellDepends = [ base Cabal configuration-tools ]; executableHaskellDepends = [ - aeson async base bytes bytestring configuration-tools connection - containers cryptonite exceptions hashable hostaddress http-client - http-client-tls http-types lens loglevel memory mwc-random process - retry stm streaming streaming-events text time unordered-containers - wai-extra + aeson async attoparsec base base16-bytestring bytes bytestring + clock configuration-tools connection cryptonite exceptions hashable + hostaddress http-client http-client-tls http-types lens loglevel + memory mwc-random process retry stm streaming streaming-commons + streaming-events text time unordered-containers wai-extra + ]; + testHaskellDepends = [ + aeson base base16-bytestring bytes bytestring clock + configuration-tools cryptonite exceptions hashable hostaddress + memory QuickCheck quickcheck-instances stm streaming-commons + sydtest text time ]; description = "Mining Client for Kadena Chainweb"; license = lib.licenses.bsd3; @@ -56906,7 +56721,9 @@ self: { ]; description = "A REST Web Api server template for building (micro)services"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "chakra-exe"; + broken = true; }) {}; "chalk" = callPackage @@ -57219,8 +57036,6 @@ self: { ]; description = "Charting library targetting SVGs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chart-svg-various" = callPackage @@ -57797,8 +57612,8 @@ self: { }: mkDerivation { pname = "chez-grater"; - version = "0.1.1"; - sha256 = "0yxc054mvq0016a8jr6mv9j4l971llmm2cp1gya6by20icav1z54"; + version = "0.1.2"; + sha256 = "0i84fsgh7dsay1p2rw86fxrqasz7w8czfz5jri4ry4ac47ag0mf7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -57807,8 +57622,8 @@ self: { scalpel text unordered-containers ]; executableHaskellDepends = [ - aeson aeson-pretty base bytestring network-uri optparse-applicative - text + aeson aeson-pretty base bytestring case-insensitive network-uri + optparse-applicative text ]; testHaskellDepends = [ attoparsec base bytestring case-insensitive containers file-embed @@ -57843,7 +57658,6 @@ self: { description = "A tmux client for Polysemy"; license = "BSD-2-Clause-Patent"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chiasma-test" = callPackage @@ -57909,6 +57723,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell bindings for Chipmunk2D physics engine"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "chitauri" = callPackage @@ -58071,7 +57887,6 @@ self: { description = "A mirror implementation of chp that generates a specification of the program"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chp-transformers" = callPackage @@ -58100,7 +57915,6 @@ self: { ]; description = "Constraint Handling Rules"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "chr-data" = callPackage @@ -58119,8 +57933,6 @@ self: { ]; description = "Datatypes required for chr library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chr-lang" = callPackage @@ -58221,6 +58033,7 @@ self: { description = "measure timings of data evaluation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "chronologique" = callPackage @@ -58449,8 +58262,6 @@ self: { ]; description = "Church encoded pair"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "churros" = callPackage @@ -58469,8 +58280,6 @@ self: { ]; description = "Channel/Arrow based streaming computation library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cicero-api" = callPackage @@ -58495,9 +58304,7 @@ self: { ]; description = "API bindings to IOHK's Cicero job scheduler"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; mainProgram = "cicero-cli"; - broken = true; }) {}; "cielo" = callPackage @@ -58635,6 +58442,8 @@ self: { ]; description = "AES and common modes using AES-NI when available"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cipher-blowfish" = callPackage @@ -58712,6 +58521,8 @@ self: { ]; description = "DES and 3DES primitives"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cipher-rc4" = callPackage @@ -58762,7 +58573,6 @@ self: { executableHaskellDepends = [ array base bytestring parseargs ]; description = "Implementation of CipherSaber2 RC4 cryptography"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "cs2"; }) {}; @@ -58777,6 +58587,32 @@ self: { license = lib.licenses.bsd3; }) {}; + "circle" = callPackage + ({ mkDerivation, aeson, autodocodec, base, bytestring + , case-insensitive, containers, country, hspec, hspec-expectations + , http-client, http-client-tls, http-types, pcre-heavy, random + , refined, safe, template-haskell, text, time, unordered-containers + , uuid, vector + }: + mkDerivation { + pname = "circle"; + version = "0.1.0.0"; + sha256 = "074v9xdrc6gr8galy61pzpnja7fhsldvinma0nq248j3sbywv66c"; + libraryHaskellDepends = [ + aeson autodocodec base bytestring case-insensitive containers + country http-client http-client-tls http-types pcre-heavy refined + template-haskell text time unordered-containers uuid vector + ]; + testHaskellDepends = [ + base hspec hspec-expectations http-client http-client-tls random + safe text time uuid + ]; + description = "Circle API client for Haskell"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "circle-packing" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -58944,35 +58780,6 @@ self: { }: mkDerivation { pname = "citeproc"; - version = "0.6.0.1"; - sha256 = "015ansq3a710s0hzs2157fx12bc4f1hy45l4dbi6j477sy800bqc"; - revision = "1"; - editedCabalFile = "1mzhq6s0jcncm71s825bvc289lq7i45rxmmi33x2j5i0v93zci4b"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base bytestring case-insensitive containers - data-default file-embed filepath pandoc-types safe scientific text - transformers unicode-collation uniplate vector xml-conduit - ]; - testHaskellDepends = [ - aeson base bytestring containers Diff directory filepath mtl pretty - text timeit transformers - ]; - description = "Generates citations and bibliography from CSL styles"; - license = lib.licenses.bsd2; - maintainers = [ lib.maintainers.sternenseemann ]; - }) {}; - - "citeproc_0_8_0_2" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring - , case-insensitive, containers, data-default, Diff, directory - , file-embed, filepath, mtl, pandoc-types, pretty, safe, scientific - , text, timeit, transformers, unicode-collation, uniplate, vector - , xml-conduit - }: - mkDerivation { - pname = "citeproc"; version = "0.8.0.2"; sha256 = "1rja6vdggmh7d40gsg2xfs9md6m1zbfddpsd27a15qyqb3530jzw"; isLibrary = true; @@ -58988,7 +58795,6 @@ self: { ]; description = "Generates citations and bibliography from CSL styles"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -59371,6 +59177,7 @@ self: { executableHaskellDepends = [ base ]; description = "Clash: a functional hardware description language - GHC frontend"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "clash-lib" = callPackage @@ -59417,6 +59224,7 @@ self: { ]; description = "Clash: a functional hardware description language - As a library"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; mainProgram = "v16-upgrade-primitives"; }) {}; @@ -59438,6 +59246,7 @@ self: { ]; description = "Hedgehog Generators for clash-lib"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "clash-multisignal" = callPackage @@ -59453,7 +59262,6 @@ self: { ]; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-prelude" = callPackage @@ -59492,6 +59300,8 @@ self: { ]; description = "Clash: a functional hardware description language - Prelude library"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clash-prelude-hedgehog" = callPackage @@ -59508,6 +59318,7 @@ self: { ]; description = "Hedgehog Generators for clash-prelude"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "clash-prelude-quickcheck" = callPackage @@ -59521,7 +59332,6 @@ self: { description = "QuickCheck instances for various types in the CλaSH Prelude"; license = "unknown"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-shake" = callPackage @@ -59531,14 +59341,15 @@ self: { }: mkDerivation { pname = "clash-shake"; - version = "0.3.1.2"; - sha256 = "1nj9vhzfybm43jcns8nr3ka4gjc1xyn0ccv6xiqdyjipzldx4a1n"; + version = "0.3.2"; + sha256 = "0bgnl1q1xm1yhwspqlfr02p37iy8vka727r4awr2lihg12x83bjx"; libraryHaskellDepends = [ aeson base bytestring clash-ghc clash-lib clash-prelude directory shake split stache text unordered-containers ]; description = "Shake rules for building Clash programs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "clash-systemverilog" = callPackage @@ -59557,7 +59368,6 @@ self: { description = "CAES Language for Synchronous Hardware - SystemVerilog backend"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-verilog" = callPackage @@ -59576,7 +59386,6 @@ self: { description = "CAES Language for Synchronous Hardware - Verilog backend"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-vhdl" = callPackage @@ -59595,7 +59404,6 @@ self: { description = "CAES Language for Synchronous Hardware - VHDL backend"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clashilator" = callPackage @@ -59621,7 +59429,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "clashilator"; - broken = true; }) {}; "classify" = callPackage @@ -59804,20 +59611,6 @@ self: { broken = true; }) {}; - "clay_0_13_3" = callPackage - ({ mkDerivation, base, hspec, hspec-discover, mtl, text }: - mkDerivation { - pname = "clay"; - version = "0.13.3"; - sha256 = "192lsbyj6azjs2ygpx4i47fyr8zfmvwcas8mia07ndqglk2c9csx"; - libraryHaskellDepends = [ base mtl text ]; - testHaskellDepends = [ base hspec hspec-discover mtl text ]; - testToolDepends = [ hspec-discover ]; - description = "CSS preprocessor as embedded Haskell"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "clay" = callPackage ({ mkDerivation, base, hspec, hspec-discover, mtl, text }: mkDerivation { @@ -59829,6 +59622,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "CSS preprocessor as embedded Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks" = callPackage @@ -59863,7 +59658,6 @@ self: { libraryToolDepends = [ hsx2hs ]; description = "A secure, reliable content management system (CMS) and blogging platform"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) openssl;}; "clckwrks-cli" = callPackage @@ -59886,7 +59680,6 @@ self: { ]; description = "a command-line interface for adminstrating some aspects of clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "clckwrks-cli"; }) {}; @@ -59937,6 +59730,7 @@ self: { description = "bug tracking plugin for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks-plugin-ircbot" = callPackage @@ -59986,6 +59780,7 @@ self: { description = "mailing list plugin for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks-plugin-media" = callPackage @@ -60008,7 +59803,6 @@ self: { ]; description = "media plugin for clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-plugin-page" = callPackage @@ -60034,7 +59828,6 @@ self: { libraryToolDepends = [ hsx2hs ]; description = "support for CMS/Blogging in clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-plugin-redirect" = callPackage @@ -60059,7 +59852,6 @@ self: { ]; description = "support redirects for CMS/Blogging in clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-theme-bootstrap" = callPackage @@ -60077,7 +59869,6 @@ self: { ]; description = "simple bootstrap based template for clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-theme-clckwrks" = callPackage @@ -60096,6 +59887,7 @@ self: { description = "simple bootstrap based template for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks-theme-geo-bootstrap" = callPackage @@ -60109,6 +59901,7 @@ self: { description = "geo bootstrap based template for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cld2" = callPackage @@ -60461,7 +60254,6 @@ self: { description = "A Haskell library as database client for Clickhouse"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clientsession" = callPackage @@ -60571,31 +60363,8 @@ self: { }: mkDerivation { pname = "climb"; - version = "0.3.3"; - sha256 = "0d6jscwbjlm21jcdl29c3ix6vd5ly9mjr0ljchzkr6yk7gqk4z24"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring containers exceptions linenoise mtl text - unliftio-core - ]; - executableHaskellDepends = [ - base bytestring containers exceptions linenoise mtl text - unliftio-core - ]; - description = "Building blocks for a GHCi-like REPL with colon-commands"; - license = lib.licenses.bsd3; - mainProgram = "climb-demo"; - }) {}; - - "climb_0_4_0" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , linenoise, mtl, text, unliftio-core - }: - mkDerivation { - pname = "climb"; - version = "0.4.0"; - sha256 = "0b27hlr70vcm2mklbnrsxk306d684cgbig8qgczgfx7r432wghg1"; + version = "0.4.1"; + sha256 = "1h3a3ghynd1k08jd8fb02rsbf9a1y8j9gz822mrc23p11zh4qcp3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -60608,7 +60377,6 @@ self: { ]; description = "Building blocks for a GHCi-like REPL with colon-commands"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "climb-demo"; }) {}; @@ -60796,6 +60564,7 @@ self: { description = "timer functionality to clock IO commands"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {QtCore = null;}; "clogparse" = callPackage @@ -61019,6 +60788,7 @@ self: { testHaskellDepends = [ base ]; description = "Glue between clr-host and clr-typed"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "clr-host" = callPackage @@ -61093,6 +60863,8 @@ self: { testHaskellDepends = [ base clr-marshal hspec text ]; description = "A strongly typed Haskell interface to the CLR type system"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clr-win-linker" = callPackage @@ -61192,6 +60964,7 @@ self: { description = "High performance clustering algorithms"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clustertools" = callPackage @@ -61799,9 +61572,7 @@ self: { ]; description = "A Polysemy logging effect for high quality (unstructured) logs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; }) {}; "co-log-sys" = callPackage @@ -62025,7 +61796,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "codec-libevent-generate"; - broken = true; }) {}; "codec-mbox" = callPackage @@ -62179,8 +61949,6 @@ self: { ]; description = "Graphics library for CodeWorld"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "codex" = callPackage @@ -62277,6 +62045,8 @@ self: { benchmarkHaskellDepends = [ base gauge ]; description = "Utility functions for Coercible types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "coercion-extras" = callPackage @@ -62519,8 +62289,6 @@ self: { ]; description = "Generate CSV & XLSX files for importing into CoinTracking"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "colada" = callPackage @@ -62564,6 +62332,7 @@ self: { description = "Rudimentary JSON-RPC 2.0 client over raw TCP."; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cold-widow" = callPackage @@ -62671,6 +62440,8 @@ self: { ]; description = "An Applicative Functor for extracting parts of a stream of values"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "collect-errors" = callPackage @@ -62773,8 +62544,8 @@ self: { pname = "colonnade"; version = "1.2.0.2"; sha256 = "1asjx71gp26a15v7g3p8bfddb5nnzky6672c35xx35hq73mhykr4"; - revision = "3"; - editedCabalFile = "078j65fw9cf8sscnvd0c3dkg24pcw4krav1x0zsg493ynxslv95z"; + revision = "4"; + editedCabalFile = "0425ag47i8llirh6jdy11mqilr6bdq0nzcx4yfha2n57qpx1gkjs"; libraryHaskellDepends = [ base bytestring contravariant profunctors semigroups text vector ]; @@ -62906,8 +62677,6 @@ self: { libraryHaskellDepends = [ base lens linear profunctors ]; description = "A type for colors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "colour" = callPackage @@ -63294,6 +63063,7 @@ self: { ]; description = "Arrays where the index type is a function of the shape type"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "comfort-array-shape" = callPackage @@ -63315,6 +63085,7 @@ self: { doHaddock = false; description = "Additional shape types for the comfort-array package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "comfort-fftw" = callPackage @@ -63335,6 +63106,7 @@ self: { ]; description = "High-level interface to FFTW (Fast Fourier Transform) based on comfort-array"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "comfort-graph" = callPackage @@ -63373,6 +63145,7 @@ self: { description = "A format for describing comics"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "comma" = callPackage @@ -63451,7 +63224,9 @@ self: { testHaskellDepends = [ base commandert text unordered-containers ]; description = "A command line argument/option parser library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "task-manager"; + broken = true; }) {}; "commandert" = callPackage @@ -63488,6 +63263,7 @@ self: { description = "Library for working with commoditized amounts and price histories"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "commonmark" = callPackage @@ -63533,6 +63309,28 @@ self: { mainProgram = "commonmark"; }) {}; + "commonmark-extensions_0_2_3_2" = callPackage + ({ mkDerivation, base, commonmark, containers, emojis, filepath + , network-uri, parsec, tasty, tasty-bench, tasty-hunit, text + , transformers + }: + mkDerivation { + pname = "commonmark-extensions"; + version = "0.2.3.2"; + sha256 = "1k5rlh2grg6g1waszhp565m360n1iynjvbkjz8xmap8y234g1bjj"; + libraryHaskellDepends = [ + base commonmark containers emojis filepath network-uri parsec text + transformers + ]; + testHaskellDepends = [ + base commonmark parsec tasty tasty-hunit text + ]; + benchmarkHaskellDepends = [ base commonmark tasty-bench text ]; + description = "Pure Haskell commonmark parser"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "commonmark-extensions" = callPackage ({ mkDerivation, base, commonmark, containers, emojis, filepath , network-uri, parsec, tasty, tasty-bench, tasty-hunit, text @@ -63618,7 +63416,6 @@ self: { description = "Provide communications security using symmetric ephemeral keys"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "commsec-keyexchange" = callPackage @@ -63790,6 +63587,8 @@ self: { testHaskellDepends = [ base directory ]; description = "Non-GC'd, contiguous storage for immutable data structures"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "compact-list" = callPackage @@ -63853,7 +63652,6 @@ self: { description = "Mutable vector with different GC characteristics"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "compact-sequences" = callPackage @@ -63887,7 +63685,6 @@ self: { description = "Socket functions for compact normal form"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "compact-string" = callPackage @@ -64126,8 +63923,6 @@ self: { ]; description = "Parse a Pandoc to a composite value"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "compdoc-dhall-decoder" = callPackage @@ -64146,7 +63941,6 @@ self: { ]; description = "Allows you to write FromDhall instances for Compdoc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "compendium-client" = callPackage @@ -64372,8 +64166,8 @@ self: { }: mkDerivation { pname = "composite-aeson"; - version = "0.8.1.0"; - sha256 = "1xpb2m929si22igssijbmacmc2s36h7mq59k0hqwb7i9bnwzzpg5"; + version = "0.8.2.1"; + sha256 = "0glzqkd0vxrbajx76gfwqvrdg2q6648x64x5fm876899dr9cbss7"; libraryHaskellDepends = [ aeson aeson-better-errors base composite-base containers contravariant generic-deriving hashable lens mmorph mtl profunctors @@ -64409,8 +64203,8 @@ self: { ({ mkDerivation, base, composite-aeson, path }: mkDerivation { pname = "composite-aeson-path"; - version = "0.8.1.0"; - sha256 = "11f9xr2zfqj2bskr7yypxrd5qa64lzsbgdr6h3yy7ysr6cwpaqw7"; + version = "0.8.2.1"; + sha256 = "096k8wg3r4rfn4yyqpn8higglllk4mq3iwy57x33mnqgxqbdc1lm"; libraryHaskellDepends = [ base composite-aeson path ]; description = "Formatting data for the path library"; license = lib.licenses.bsd3; @@ -64424,13 +64218,15 @@ self: { }: mkDerivation { pname = "composite-aeson-refined"; - version = "0.8.1.0"; - sha256 = "1w6dp10xxd391dhj1ghqnld27b36c86zjrry0r0xz1yn6bbxw97s"; + version = "0.8.2.1"; + sha256 = "1k1hvhczrpx13z0zryih56dhnajmsrspaslrrbir7kbr9c3mc1jq"; libraryHaskellDepends = [ aeson-better-errors base composite-aeson mtl refined ]; description = "composite-aeson support for Refined from the refined package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "composite-aeson-throw" = callPackage @@ -64469,8 +64265,8 @@ self: { }: mkDerivation { pname = "composite-base"; - version = "0.8.1.0"; - sha256 = "18sq4alpkwidgh6pd9yxnxrq8p11pfwxg84fsjzzxlxqcl50bpm8"; + version = "0.8.2.0"; + sha256 = "0niw6rc9sscq73vja8pzds4r87yvckh0h5138i86wv18m34ksniw"; libraryHaskellDepends = [ base deepseq exceptions lens monad-control mtl profunctors template-haskell text transformers transformers-base unliftio-core @@ -64485,15 +64281,51 @@ self: { license = lib.licenses.bsd3; }) {}; + "composite-base_0_8_2_1" = callPackage + ({ mkDerivation, base, deepseq, exceptions, hspec, lens + , monad-control, mtl, profunctors, QuickCheck, template-haskell + , text, transformers, transformers-base, unliftio-core, vinyl + }: + mkDerivation { + pname = "composite-base"; + version = "0.8.2.1"; + sha256 = "0i2mamh5gz7ay1cm5nkmdbh2lnaph42pfi2aa9jb2baxi0jgxdri"; + libraryHaskellDepends = [ + base deepseq exceptions lens monad-control mtl profunctors + template-haskell text transformers transformers-base unliftio-core + vinyl + ]; + testHaskellDepends = [ + base deepseq exceptions hspec lens monad-control mtl profunctors + QuickCheck template-haskell text transformers transformers-base + unliftio-core vinyl + ]; + description = "Shared utilities for composite-* packages"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "composite-binary" = callPackage ({ mkDerivation, base, binary, composite-base }: mkDerivation { pname = "composite-binary"; - version = "0.8.1.0"; - sha256 = "1vhcv7jmh4ckf9837dpkzpjrh65alndgngxj15igxrwbsycl2wp9"; + version = "0.8.2.0"; + sha256 = "1ijlrwyji9179hc5wcmdzzf3g79xkz6k1kjxq0l7iqyvfjh2zrkh"; + libraryHaskellDepends = [ base binary composite-base ]; + description = "Orphan binary instances"; + license = lib.licenses.bsd3; + }) {}; + + "composite-binary_0_8_2_1" = callPackage + ({ mkDerivation, base, binary, composite-base }: + mkDerivation { + pname = "composite-binary"; + version = "0.8.2.1"; + sha256 = "0bxnzxvw5mjhz3kh6x265l70hp1z3z1y9fbdwhrgv6bhhinxb3hq"; libraryHaskellDepends = [ base binary composite-base ]; description = "Orphan binary instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "composite-cassava" = callPackage @@ -64531,8 +64363,6 @@ self: { ]; description = "Dhall instances for composite records"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "composite-ekg" = callPackage @@ -64540,21 +64370,36 @@ self: { }: mkDerivation { pname = "composite-ekg"; - version = "0.8.1.0"; - sha256 = "17i8mi9i8x3d9idfy60picz5qjqhl2wszjdbm8cj5szjw94lmka5"; + version = "0.8.2.0"; + sha256 = "0kcyscjs8qsydhj7labm8v62xcm9vc39rcw13xlvwmxz3lwi5jl3"; + libraryHaskellDepends = [ + base composite-base ekg-core lens text vinyl + ]; + description = "EKG Metrics for Vinyl records"; + license = lib.licenses.bsd3; + }) {}; + + "composite-ekg_0_8_2_1" = callPackage + ({ mkDerivation, base, composite-base, ekg-core, lens, text, vinyl + }: + mkDerivation { + pname = "composite-ekg"; + version = "0.8.2.1"; + sha256 = "0c0rxa30r19wcvqrw20xk96652mxknbs1lqpnzdj9kz77al3k1kl"; libraryHaskellDepends = [ base composite-base ekg-core lens text vinyl ]; description = "EKG Metrics for Vinyl records"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "composite-hashable" = callPackage ({ mkDerivation, base, composite-base, hashable }: mkDerivation { pname = "composite-hashable"; - version = "0.8.1.0"; - sha256 = "0gz5bqyhwm863d6hxd67s6xbvk8shh2x7ggz1iyf48s16mr9i1w7"; + version = "0.8.2.1"; + sha256 = "1ynsmb9rw93n4dyrrfipb9glg5argh0xsbrb59jhgqi8ajfr7gwv"; libraryHaskellDepends = [ base composite-base hashable ]; description = "Orphan hashable instances"; license = lib.licenses.bsd3; @@ -64587,8 +64432,6 @@ self: { libraryHaskellDepends = [ base composite-base lens vinyl ]; description = "Extra lens functions for composite"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "composite-opaleye" = callPackage @@ -64598,8 +64441,8 @@ self: { }: mkDerivation { pname = "composite-opaleye"; - version = "0.8.1.0"; - sha256 = "1i0algplj79vafqai57hywcar4j1gi3w9lnq4hv8dv37z0isc6f4"; + version = "0.8.2.1"; + sha256 = "0w62s1cd6izkvc9ycb6rz6cbc7pa8mic9rbbmwjbn9xxfcbk2xph"; libraryHaskellDepends = [ base bytestring composite-base lens opaleye postgresql-simple product-profunctors profunctors split template-haskell text vinyl @@ -64620,8 +64463,8 @@ self: { }: mkDerivation { pname = "composite-swagger"; - version = "0.8.1.0"; - sha256 = "1229c3wpkmnwmkzgcxs7pc01dmszvipvlq7dc1h1lvgi2jj24pg8"; + version = "0.8.2.1"; + sha256 = "0sbjb60ghd86q3hxgmq4anc81ww4v4ny1ans0r9a5chp3bqvbi6a"; libraryHaskellDepends = [ base composite-base insert-ordered-containers lens swagger2 template-haskell text vinyl @@ -65185,8 +65028,6 @@ self: { ]; description = "A client side web UI framework for Haskell. Core framework."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "concurrency" = callPackage @@ -65225,7 +65066,9 @@ self: { ]; description = "Benchmarks to compare concurrency APIs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "makecharts"; + broken = true; }) {}; "concurrent-barrier" = callPackage @@ -65461,6 +65304,8 @@ self: { testHaskellDepends = [ base containers ]; description = "A fast concurrent unique identifier supply with a pure API"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "concurrent-utilities" = callPackage @@ -65513,7 +65358,9 @@ self: { testHaskellDepends = [ base cmdargs hourglass hspec QuickCheck ]; description = "Parser and interpreter of OpenStreetMap conditional restriction values"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "conditional-restriction-parser-exe"; + broken = true; }) {}; "condor" = callPackage @@ -65823,6 +65670,8 @@ self: { ]; description = "Conduit source and sink for Network.Connection."; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "conduit-extra" = callPackage @@ -66232,6 +66081,8 @@ self: { ]; description = "Configuration for reading dhall files"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "conferer-hedis" = callPackage @@ -66418,6 +66269,8 @@ self: { ]; description = "conferer's FromConfig instances for warp settings"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "conferer-yaml" = callPackage @@ -66815,6 +66668,7 @@ self: { ]; description = "Vinyl-style extensible graphs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "conjugateGradient" = callPackage @@ -67079,6 +66933,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Generalization of standard Functor, Foldable, and Traversable classes"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "constrained-categories" = callPackage @@ -67181,6 +67037,7 @@ self: { ]; description = "Instances of standard platform types for 'constrained' package"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "constraint" = callPackage @@ -67279,6 +67136,8 @@ self: { ]; description = "Manipulating constraints and deriving class instances programmatically"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "constraints-emerge" = callPackage @@ -67316,6 +67175,22 @@ self: { mainProgram = "readme"; }) {}; + "constraints-extras_0_4_0_0" = callPackage + ({ mkDerivation, aeson, base, constraints, template-haskell }: + mkDerivation { + pname = "constraints-extras"; + version = "0.4.0.0"; + sha256 = "1irf4kd7a5h1glczbc73c3590m58azn4s68nfrjfg1h96i7mjfgn"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base constraints template-haskell ]; + executableHaskellDepends = [ aeson base constraints ]; + description = "Utility package for constraints"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "readme"; + }) {}; + "constrictor" = callPackage ({ mkDerivation, base, ghc-prim, transformers }: mkDerivation { @@ -67554,6 +67429,8 @@ self: { libraryHaskellDepends = [ base base-unicode-symbols containers ]; description = "Unicode alternatives for common functions and operators"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "containers-verified" = callPackage @@ -67730,8 +67607,8 @@ self: { }: mkDerivation { pname = "contiguous"; - version = "0.6.2.0"; - sha256 = "0ykd3nrc2ywf3svrkqsvvhycjf6hf5jm5dhhd3zpl57877r5cz72"; + version = "0.6.3.0"; + sha256 = "1vqzv5xr6dkvw0789rz3z39b7ldm9xrk2sv8c9k2fk14yxl7qibx"; libraryHaskellDepends = [ base deepseq primitive primitive-unlifted run-st ]; @@ -67889,6 +67766,8 @@ self: { ]; description = "Validation types/typeclass based on the contravariance"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "contravariant" = callPackage @@ -68046,7 +67925,6 @@ self: { ]; description = "Monads-fd instances for the EMT exceptions monad transformer"; license = lib.licenses.publicDomain; - hydraPlatforms = lib.platforms.none; }) {}; "control-monad-exception-monadstf" = callPackage @@ -68166,8 +68044,6 @@ self: { libraryHaskellDepends = [ base transformers ]; description = "Fast, easy to use CPS-based monad transformers"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "contstuff-monads-tf" = callPackage @@ -68180,6 +68056,7 @@ self: { description = "ContStuff instances for monads-tf transformers (deprecated)"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "contstuff-transformers" = callPackage @@ -68192,6 +68069,7 @@ self: { description = "Deprecated interface between contstuff 0.7.0 and the transformers package"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "converge" = callPackage @@ -68318,6 +68196,7 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "convert-annotation"; + broken = true; }) {}; "convertible" = callPackage @@ -68598,7 +68477,6 @@ self: { description = "A compiler for CoPilot targeting SBV"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "copilot-theorem" = callPackage @@ -68717,7 +68595,9 @@ self: { executableToolDepends = [ alex happy ]; description = "compile your own mini functional language with Core"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "core-compiler-exe"; + broken = true; }) {}; "core-data" = callPackage @@ -68756,27 +68636,6 @@ self: { }) {}; "core-program" = callPackage - ({ mkDerivation, async, base, bytestring, chronologique, core-data - , core-text, directory, exceptions, filepath, fsnotify, hashable - , hourglass, mtl, prettyprinter, safe-exceptions, stm - , template-haskell, terminal-size, text, text-short, transformers - , typed-process, unix - }: - mkDerivation { - pname = "core-program"; - version = "0.4.6.4"; - sha256 = "0bkjb9lpcnkj1lkpw309q3chd9aw5s5gvdprr335121xpjbgl33m"; - libraryHaskellDepends = [ - async base bytestring chronologique core-data core-text directory - exceptions filepath fsnotify hashable hourglass mtl prettyprinter - safe-exceptions stm template-haskell terminal-size text text-short - transformers typed-process unix - ]; - description = "Opinionated Haskell Interoperability"; - license = lib.licenses.mit; - }) {}; - - "core-program_0_6_1_1" = callPackage ({ mkDerivation, base, bytestring, core-data, core-text, directory , exceptions, filepath, fsnotify, hashable, hourglass, mtl , prettyprinter, safe-exceptions, stm, template-haskell @@ -68795,7 +68654,6 @@ self: { ]; description = "Opinionated Haskell Interoperability"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "core-telemetry" = callPackage @@ -68815,8 +68673,6 @@ self: { ]; description = "Advanced telemetry"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "core-text" = callPackage @@ -68849,6 +68705,8 @@ self: { testHaskellDepends = [ base ]; description = "\"Provide warnings for unexpected Core generation\""; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "core-webserver-servant" = callPackage @@ -68866,7 +68724,6 @@ self: { ]; description = "Interoperability with Servant"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "core-webserver-warp" = callPackage @@ -68885,7 +68742,6 @@ self: { ]; description = "Interoperability with Wai/Warp"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "corebot-bliki" = callPackage @@ -69139,22 +68995,6 @@ self: { }: mkDerivation { pname = "countable"; - version = "1.0"; - sha256 = "0v0fdapdnzdqbkjhgkicx1njs3ybshk83h79fbgln13sd5pyp87r"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring silently tasty tasty-golden tasty-hunit - ]; - description = "Countable, Searchable, Finite, Empty classes"; - license = lib.licenses.bsd3; - }) {}; - - "countable_1_2" = callPackage - ({ mkDerivation, base, bytestring, silently, tasty, tasty-golden - , tasty-hunit - }: - mkDerivation { - pname = "countable"; version = "1.2"; sha256 = "119v5ms4nyxikfwlmz71qk9gqp53zkpyxc6wm3qp5bm9b6n1ff47"; libraryHaskellDepends = [ base ]; @@ -69163,7 +69003,6 @@ self: { ]; description = "Countable, Searchable, Finite, Empty classes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "countable-inflections" = callPackage @@ -69204,6 +69043,33 @@ self: { }: mkDerivation { pname = "country"; + version = "0.2.3"; + sha256 = "12d1nymfj13jgh5jhznrg8sgxvxyb2y3lvbl6p4mpa3qqhggyr3g"; + libraryHaskellDepends = [ + aeson attoparsec base bytebuild bytehash byteslice bytestring + contiguous deepseq entropy hashable primitive primitive-unlifted + scientific text text-short unordered-containers + ]; + testHaskellDepends = [ + base byteslice primitive QuickCheck quickcheck-classes tasty + tasty-quickcheck text text-short + ]; + benchmarkHaskellDepends = [ + base bytehash byteslice bytestring compact gauge primitive text + ]; + description = "Country data type and functions"; + license = lib.licenses.bsd3; + }) {}; + + "country_0_2_3_1" = callPackage + ({ mkDerivation, aeson, attoparsec, base, bytebuild, bytehash + , byteslice, bytestring, compact, contiguous, deepseq, entropy + , gauge, hashable, primitive, primitive-unlifted, QuickCheck + , quickcheck-classes, scientific, tasty, tasty-quickcheck, text + , text-short, unordered-containers + }: + mkDerivation { + pname = "country"; version = "0.2.3.1"; sha256 = "0c601fa2m6f5b9g7i1azh9aqhnsiqcrpqmngwnhrxf8gm4jh5yi5"; libraryHaskellDepends = [ @@ -69221,7 +69087,6 @@ self: { description = "Country data type and functions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "country-codes" = callPackage @@ -69293,28 +69158,12 @@ self: { }: mkDerivation { pname = "covariance"; - version = "0.1.0.6"; - sha256 = "0aqml07q4rxihv3mrflprx2gm1c56np2m4n8kbipcdiflndn1017"; - libraryHaskellDepends = [ base glasso hmatrix statistics vector ]; - testHaskellDepends = [ base hmatrix tasty tasty-hunit ]; - description = "Well-conditioned estimation of large-dimensional covariance matrices"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "covariance_0_2_0_1" = callPackage - ({ mkDerivation, base, glasso, hmatrix, statistics, tasty - , tasty-hunit, vector - }: - mkDerivation { - pname = "covariance"; version = "0.2.0.1"; sha256 = "1qidlpg3g76vw390bdily0hdnzx2xlnb21ai11xzffwqywg5xpzh"; libraryHaskellDepends = [ base glasso hmatrix statistics vector ]; testHaskellDepends = [ base hmatrix tasty tasty-hunit ]; description = "Well-conditioned estimation of large-dimensional covariance matrices"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -69911,6 +69760,7 @@ self: { ]; description = "Crack various integer and floating-point data formats"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "crackNum"; }) {}; @@ -70104,6 +69954,8 @@ self: { description = "Haskell bindings for crc32c"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "crdt" = callPackage @@ -70471,7 +70323,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "criterion-compare"; - broken = true; }) {}; "criterion-measurement" = callPackage @@ -71165,6 +71016,7 @@ self: { testToolDepends = [ tasty-discover ]; description = "Easy-and-safe-to-use high-level cryptography based on Sodium"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "crypto-token" = callPackage @@ -71490,30 +71342,6 @@ self: { }: mkDerivation { pname = "cryptonite"; - version = "0.29"; - sha256 = "13xhp3hshb8x06bw37kp16c9jpjmgfn06nkj9drz745fv8f04fnq"; - revision = "1"; - editedCabalFile = "1gaabsh8ihxcb6f3pplvpkplw7xbdxvflmc1wwnssx7s070n4323"; - libraryHaskellDepends = [ - base basement bytestring deepseq ghc-prim integer-gmp memory - ]; - testHaskellDepends = [ - base bytestring memory tasty tasty-hunit tasty-kat tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring deepseq gauge memory random - ]; - description = "Cryptography Primitives sink"; - license = lib.licenses.bsd3; - }) {}; - - "cryptonite_0_30" = callPackage - ({ mkDerivation, base, basement, bytestring, deepseq, gauge - , ghc-prim, integer-gmp, memory, random, tasty, tasty-hunit - , tasty-kat, tasty-quickcheck - }: - mkDerivation { - pname = "cryptonite"; version = "0.30"; sha256 = "07bb97iszhnrfddh5ql6p3dqd0c13xycjw5n2kljw7d0ia59q2an"; libraryHaskellDepends = [ @@ -71527,7 +71355,6 @@ self: { ]; description = "Cryptography Primitives sink"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "cryptonite-cd" = callPackage @@ -71732,6 +71559,7 @@ self: { ]; description = "a gallery of Csound instruments"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-controllers" = callPackage @@ -71743,6 +71571,7 @@ self: { libraryHaskellDepends = [ base csound-expression ]; testHaskellDepends = [ base csound-expression ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-expression" = callPackage @@ -71762,6 +71591,7 @@ self: { ]; description = "library to make electronic music"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-expression-dynamic" = callPackage @@ -71779,6 +71609,8 @@ self: { ]; description = "dynamic core for csound-expression library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "csound-expression-opcodes" = callPackage @@ -71794,6 +71626,7 @@ self: { ]; description = "opcodes for the library csound-expression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-expression-typed" = callPackage @@ -71814,6 +71647,7 @@ self: { ]; description = "typed core for the library csound-expression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-sampler" = callPackage @@ -71825,6 +71659,7 @@ self: { libraryHaskellDepends = [ base csound-expression transformers ]; description = "A musical sampler based on Csound"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csp" = callPackage @@ -72068,6 +71903,8 @@ self: { ]; description = "extracts data from a CSV file"; license = lib.licenses.gpl3Plus; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "csv-table" = callPackage @@ -72502,6 +72339,8 @@ self: { testHaskellDepends = [ base parsec text ]; description = "Curly braces (brackets) expanding"; license = lib.licenses.lgpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "currencies" = callPackage @@ -72700,8 +72539,6 @@ self: { ]; description = "Fast, Haskell RPC"; license = lib.licenses.publicDomain; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "curryrs" = callPackage @@ -72736,7 +72573,6 @@ self: { ]; description = "Terminal tool for viewing tabular data"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "cursedcsv"; }) {}; @@ -72971,7 +72807,9 @@ self: { ]; description = "Cut files according to a position list"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "cutter"; + broken = true; }) {}; "cv-combinators" = callPackage @@ -73247,6 +73085,7 @@ self: { description = "Binary parsing and serialization with integrated size"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "damnpacket" = callPackage @@ -73800,6 +73639,7 @@ self: { description = "Use Accessor to access state in monads-fd State monad class"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-accessor-monads-tf" = callPackage @@ -73899,6 +73739,8 @@ self: { ]; description = "Type-safe, bytestring-based ASCII values"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-aviary" = callPackage @@ -74179,6 +74021,7 @@ self: { ]; description = "A class for types with a default value"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "data-default-generics" = callPackage @@ -74270,6 +74113,8 @@ self: { libraryHaskellDepends = [ base data-default-class ]; description = "Default instances for types in newer versions of base package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-default-instances-old-locale" = callPackage @@ -74429,8 +74274,6 @@ self: { testHaskellDepends = [ base hspec ]; description = "Coerce between unlifted boxed and lifted types"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "data-elf" = callPackage @@ -74444,7 +74287,6 @@ self: { ]; description = "Executable and Linkable Format (ELF) data structures"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "data-embed" = callPackage @@ -74877,8 +74719,6 @@ self: { ]; description = "Used to be Haskell 98 Lenses"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "data-lens-fd" = callPackage @@ -74893,6 +74733,7 @@ self: { description = "Lenses"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-lens-ixset" = callPackage @@ -74906,6 +74747,7 @@ self: { description = "A Lens for IxSet"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-lens-light" = callPackage @@ -74930,6 +74772,7 @@ self: { description = "Utilities for Data.Lens"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-list-sequences" = callPackage @@ -75518,8 +75361,6 @@ self: { testHaskellDepends = [ base tasty tasty-quickcheck ]; description = "Shorter binary words"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "data-tensor" = callPackage @@ -75701,7 +75542,6 @@ self: { description = "HasId/Groundhog interop"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "database-migrate" = callPackage @@ -76353,33 +76193,6 @@ self: { }: mkDerivation { pname = "dbus"; - version = "1.2.22"; - sha256 = "03bpvdgjq4l7s5mihdhazd0aamcjvg9wxlgpsnm10r7jdk7lbbia"; - libraryHaskellDepends = [ - base bytestring cereal conduit containers deepseq exceptions - filepath lens network parsec random split template-haskell text - th-lift transformers unix vector xml-conduit xml-types - ]; - testHaskellDepends = [ - base bytestring cereal containers directory extra filepath network - parsec process QuickCheck random resourcet tasty tasty-hunit - tasty-quickcheck text transformers unix vector - ]; - benchmarkHaskellDepends = [ base criterion ]; - doCheck = false; - description = "A client library for the D-Bus IPC system"; - license = lib.licenses.asl20; - }) {}; - - "dbus_1_2_27" = callPackage - ({ mkDerivation, base, bytestring, cereal, conduit, containers - , criterion, deepseq, directory, exceptions, extra, filepath, lens - , network, parsec, process, QuickCheck, random, resourcet, split - , tasty, tasty-hunit, tasty-quickcheck, template-haskell, text - , th-lift, transformers, unix, vector, xml-conduit, xml-types - }: - mkDerivation { - pname = "dbus"; version = "1.2.27"; sha256 = "0lkk9hd78h2ilvi0bj5jqq5q5lwyxzdlknwvckhwyxnlf3y6dz8z"; libraryHaskellDepends = [ @@ -76396,7 +76209,6 @@ self: { doCheck = false; description = "A client library for the D-Bus IPC system"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "dbus-client" = callPackage @@ -76642,7 +76454,6 @@ self: { description = "Disciplined Disciple Compiler core language and type checker"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ddc-core-babel" = callPackage @@ -76949,8 +76760,8 @@ self: { }: mkDerivation { pname = "dear-imgui"; - version = "2.1.1"; - sha256 = "0br6wx9jzbvk5wnzcnyrlvrq3rslx6akzsfbyb2yqw1m8nl1nkfq"; + version = "2.1.3"; + sha256 = "1czb3g51wh761r0s7d9v47fyx926r1prp3agi5cxpa34vwmghr9x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -77104,7 +76915,9 @@ self: { ]; description = "secure remote debugging"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "debug-me"; + broken = true; }) {}; "debug-pp" = callPackage @@ -77258,8 +77071,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "Preprocessing decimal literals more or less as they are (instead of via fractions)"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "decision-diagrams" = callPackage @@ -77286,6 +77097,8 @@ self: { ]; description = "Binary Decision Diagrams (BDD) and Zero-suppressed Binary Decision Diagrams (ZDD)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "declarative" = callPackage @@ -77434,7 +77247,9 @@ self: { ]; description = "Call DeepL to translate you files"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "deepl"; + broken = true; }) {}; "deeplearning-hs" = callPackage @@ -77466,12 +77281,12 @@ self: { mainProgram = "deeplearning_demonstration"; }) {}; - "deepseq_1_4_8_0" = callPackage + "deepseq_1_4_8_1" = callPackage ({ mkDerivation, array, base, ghc-prim }: mkDerivation { pname = "deepseq"; - version = "1.4.8.0"; - sha256 = "0nk5hly70xb91q5pnq87yrwh0365kqj7iyhq5mbj8yhgwxr1661d"; + version = "1.4.8.1"; + sha256 = "0p8nmji6r9171mrmnnsm1x396pz6q0vks0afy475vny73i1rx1a7"; libraryHaskellDepends = [ array base ghc-prim ]; testHaskellDepends = [ array base ghc-prim ]; description = "Deep evaluation of data structures"; @@ -78059,8 +77874,6 @@ self: { ]; description = "Dependency injection for records-of-functions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dep-t-advice" = callPackage @@ -78086,7 +77899,6 @@ self: { ]; description = "Giving good advice to functions in records-of-functions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dep-t-dynamic" = callPackage @@ -78111,7 +77923,6 @@ self: { ]; description = "A dynamic environment for dependency injection"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dep-t-value" = callPackage @@ -78134,6 +77945,7 @@ self: { description = "Pair resources files with types within your program"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dependency" = callPackage @@ -78233,6 +78045,8 @@ self: { pname = "dependent-map"; version = "0.4.0.0"; sha256 = "0b0zhyl3wkl4kkrxvq7vwjz3gn0ndxjjgyw9cky8a6xyv190pkjk"; + revision = "1"; + editedCabalFile = "160p9crvlx1sn60inkwxa6mv1h2d4fgqnpsb2km67zrkpdfyd2s2"; libraryHaskellDepends = [ base constraints-extras containers dependent-sum ]; @@ -78246,18 +78060,14 @@ self: { }: mkDerivation { pname = "dependent-monoidal-map"; - version = "0.1.1.2"; - sha256 = "11qcrxji3lvq4blzh1qk9wkhhzjkvz3maxfv63zgby98dpmkxa2x"; - revision = "1"; - editedCabalFile = "0149hmhqlj69pjg325p3da1z96czbjc18vp4i4acrvzbjh060nd4"; + version = "0.1.1.3"; + sha256 = "12kd8xr32zb21pvns3frabz5p8wlg6s3dcfgmam36hhv0d418r8l"; libraryHaskellDepends = [ aeson base constraints constraints-extras dependent-map dependent-sum dependent-sum-aeson-orphans ]; description = "Dependent map that uses semigroup mappend"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dependent-state" = callPackage @@ -78297,14 +78107,26 @@ self: { license = lib.licenses.publicDomain; }) {}; + "dependent-sum_0_7_1_1" = callPackage + ({ mkDerivation, base, constraints-extras, some }: + mkDerivation { + pname = "dependent-sum"; + version = "0.7.1.1"; + sha256 = "1vyi15rk1hf7bc4gxl2y42wxayb3zv2a8macfc1vis856rzxm43n"; + libraryHaskellDepends = [ base constraints-extras some ]; + description = "Dependent sum type"; + license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + }) {}; + "dependent-sum-aeson-orphans" = callPackage ({ mkDerivation, aeson, base, constraints, constraints-extras , dependent-map, dependent-sum, some }: mkDerivation { pname = "dependent-sum-aeson-orphans"; - version = "0.3.1.0"; - sha256 = "1psjd7va8k53vq9kh4pclsf27798mc1ggk1csjk39c8d97vm41qz"; + version = "0.3.1.1"; + sha256 = "0d2255gxsamp19hl23m076ds2j08ny95swrk9r3njjfjrwkd4zbq"; libraryHaskellDepends = [ aeson base constraints constraints-extras dependent-map dependent-sum some @@ -78532,8 +78354,8 @@ self: { ({ mkDerivation, base, data-default }: mkDerivation { pname = "derive-enumerable"; - version = "0.1.1.0"; - sha256 = "08zhyn9xcmhrrnh7y2a1r7v4nmgm2af0d41ns0wjqais67rzsxsp"; + version = "0.2.0"; + sha256 = "0hb1hnzh9xb522fj797ix5y85hmh0cy32gqsgpfvgq3zkp2r4k5m"; libraryHaskellDepends = [ base data-default ]; description = "Generic instances for enumerating complex data types"; license = lib.licenses.gpl3Only; @@ -78575,6 +78397,8 @@ self: { ]; description = "Derive class instances though various kinds of lifting"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "derive-monoid" = callPackage @@ -78695,10 +78519,8 @@ self: { }: mkDerivation { pname = "deriving-compat"; - version = "0.6.1"; - sha256 = "09lxms6220saycra4kpxihwa7zh253zmv1zpa41dbnhgffxs3zbb"; - revision = "1"; - editedCabalFile = "0m3ywfvj96yqrdyv6mgnmdhlsvjjn89wl0n1n7v2m60zaan14cgh"; + version = "0.6.2"; + sha256 = "18kpai3jrazcnxcfqqjxkv2ghrz8xyg73rn5x0ipim3z09grj6ki"; libraryHaskellDepends = [ base containers ghc-boot-th ghc-prim template-haskell th-abstraction transformers transformers-compat @@ -78878,6 +78700,8 @@ self: { ]; description = "Self-describing consumers/parsers; forms, cmd-line args, JSON, etc"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "desert" = callPackage @@ -79101,6 +78925,8 @@ self: { ]; description = "Render and parse df1 logs as HTML"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dfinity-radix-tree" = callPackage @@ -79320,64 +79146,6 @@ self: { , data-fix, deepseq, Diff, directory, doctest, dotgen, either , exceptions, filepath, foldl, gauge, generic-random, half , hashable, haskeline, http-client, http-client-tls, http-types - , lens-family-core, megaparsec, mmorph, mockery, mtl, network-uri - , optparse-applicative, parser-combinators, parsers, pretty-simple - , prettyprinter, prettyprinter-ansi-terminal, profunctors - , QuickCheck, quickcheck-instances, repline, scientific, serialise - , special-values, spoon, system-filepath, tasty - , tasty-expected-failure, tasty-hunit, tasty-quickcheck - , tasty-silver, template-haskell, temporary, text, text-manipulate - , th-lift-instances, time, transformers, turtle - , unordered-containers, uri-encode, vector - }: - mkDerivation { - pname = "dhall"; - version = "1.40.2"; - sha256 = "14wh497fipvz01zc9s31gv144spg1iqfwp6x5mlk1hjk0v9qs5by"; - revision = "2"; - editedCabalFile = "0mxq3knz1wpvs6jcdw6p0mnwpyy7aqriy2qdyxqzmhcbw2yn3hc1"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson aeson-pretty ansi-terminal atomic-write base - base16-bytestring bytestring case-insensitive cborg cborg-json - containers contravariant cryptohash-sha256 data-fix deepseq Diff - directory dotgen either exceptions filepath half hashable haskeline - http-client http-client-tls http-types lens-family-core megaparsec - mmorph mtl network-uri optparse-applicative parser-combinators - parsers pretty-simple prettyprinter prettyprinter-ansi-terminal - profunctors repline scientific serialise template-haskell text - text-manipulate th-lift-instances time transformers - unordered-containers uri-encode vector - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring cborg containers data-fix deepseq directory doctest - either filepath foldl generic-random http-client http-client-tls - lens-family-core megaparsec mockery prettyprinter QuickCheck - quickcheck-instances scientific serialise special-values spoon - system-filepath tasty tasty-expected-failure tasty-hunit - tasty-quickcheck tasty-silver template-haskell temporary text time - transformers turtle unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base bytestring containers directory gauge text - ]; - doCheck = false; - description = "A configuration language guaranteed to terminate"; - license = lib.licenses.bsd3; - mainProgram = "dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall_1_41_2" = callPackage - ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, atomic-write - , base, base16-bytestring, bytestring, case-insensitive, cborg - , cborg-json, containers, contravariant, cryptohash-sha256 - , data-fix, deepseq, Diff, directory, doctest, dotgen, either - , exceptions, filepath, foldl, gauge, generic-random, half - , hashable, haskeline, http-client, http-client-tls, http-types , indexed-traversable, lens-family-core, megaparsec, mmorph , mockery, mtl, network-uri, optparse-applicative , parser-combinators, parsers, pretty-simple, prettyprinter @@ -79393,8 +79161,8 @@ self: { pname = "dhall"; version = "1.41.2"; sha256 = "14m5rrvkid76qnvg0l14xw1mnqclhip3gjrz20g1lp4fd5p056ka"; - revision = "3"; - editedCabalFile = "1j8hhg6jxzvg1lh5lad9wp54fi0znq5syfxa7rpr6sw0v6257fi1"; + revision = "4"; + editedCabalFile = "0innb3cn98ynb8bd83jdyrm64ij7wcvajg5qcwzdwbyzpr62anfx"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -79453,7 +79221,6 @@ self: { doCheck = false; description = "A configuration language guaranteed to terminate"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "dhall"; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79464,31 +79231,6 @@ self: { }: mkDerivation { pname = "dhall-bash"; - version = "1.0.39"; - sha256 = "0by0w5dqsi0yrs9qnkpls7n5m0qwslxkcycb4s97vk8xl6nj5kk8"; - revision = "1"; - editedCabalFile = "1c01623qx7wxas9g8b4hliybvff0g994jbwrcx14hhb77xr6j14v"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring containers dhall neat-interpolation shell-escape - text - ]; - executableHaskellDepends = [ - base bytestring dhall optparse-generic text - ]; - description = "Compile Dhall to Bash"; - license = lib.licenses.bsd3; - mainProgram = "dhall-to-bash"; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-bash_1_0_40" = callPackage - ({ mkDerivation, base, bytestring, containers, dhall - , neat-interpolation, optparse-generic, shell-escape, text - }: - mkDerivation { - pname = "dhall-bash"; version = "1.0.40"; sha256 = "0fkzrj4q97cfg96slc6y3sihr9ahcj7lsjpv4kfyrvlw7jxgxld9"; revision = "1"; @@ -79504,7 +79246,6 @@ self: { ]; description = "Compile Dhall to Bash"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-bash"; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79641,38 +79382,6 @@ self: { }: mkDerivation { pname = "dhall-json"; - version = "1.7.9"; - sha256 = "11rl46vn6lzcm9kznpfc43c3a2cbq2si2zba3k2x4j360kvg9fgn"; - revision = "2"; - editedCabalFile = "0f1jb37f5k214dzxbbhw2hij7j7srydkdp0hpkapgs5k73vjvqm4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty aeson-yaml base bytestring containers dhall - exceptions filepath lens-family-core optparse-applicative - prettyprinter scientific text unordered-containers vector - ]; - executableHaskellDepends = [ - aeson aeson-pretty ansi-terminal base bytestring dhall exceptions - optparse-applicative prettyprinter prettyprinter-ansi-terminal text - ]; - testHaskellDepends = [ - aeson base bytestring dhall tasty tasty-hunit tasty-silver text - ]; - description = "Convert between Dhall and JSON or YAML"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-json_1_7_11" = callPackage - ({ mkDerivation, aeson, aeson-pretty, aeson-yaml, ansi-terminal - , base, bytestring, containers, dhall, exceptions, filepath - , lens-family-core, optparse-applicative, prettyprinter - , prettyprinter-ansi-terminal, scientific, tasty, tasty-hunit - , tasty-silver, text, unordered-containers, vector - }: - mkDerivation { - pname = "dhall-json"; version = "1.7.11"; sha256 = "0a7gcnx5xm2b1kvprvxlm7bjk68c30qs8cy3596pyngw7grsrhi6"; revision = "1"; @@ -79693,7 +79402,6 @@ self: { ]; description = "Convert between Dhall and JSON or YAML"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79755,31 +79463,6 @@ self: { }: mkDerivation { pname = "dhall-nix"; - version = "1.1.23"; - sha256 = "17ajfkhxg4kjn6w7v3ymr6nsbqplvywkcwmfzybxqvmphh4zmfjb"; - revision = "1"; - editedCabalFile = "1grr0r30nbhi1d52vhmhp0rx2pas0wbg7m5npsqczfgd1d9p43dz"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base containers data-fix dhall hnix lens-family-core - neat-interpolation text - ]; - executableHaskellDepends = [ - base dhall hnix optparse-generic text - ]; - description = "Dhall to Nix compiler"; - license = lib.licenses.bsd3; - mainProgram = "dhall-to-nix"; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-nix_1_1_25" = callPackage - ({ mkDerivation, base, containers, data-fix, dhall, hnix - , lens-family-core, neat-interpolation, optparse-generic, text - }: - mkDerivation { - pname = "dhall-nix"; version = "1.1.25"; sha256 = "1541h6hym254dycq6h40rqn82qbk74d071k67hf62aqd9l2g4y6p"; revision = "1"; @@ -79795,7 +79478,6 @@ self: { ]; description = "Dhall to Nix compiler"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-nix"; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79874,6 +79556,36 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "dhall-secret" = callPackage + ({ mkDerivation, amazonka, amazonka-kms, base, base64, bech32 + , bytestring, cryptonite, dhall, HUnit, lens, memory + , optparse-applicative, pem, text, unordered-containers + }: + mkDerivation { + pname = "dhall-secret"; + version = "0.5.52"; + sha256 = "1dxnn77kjab3vwf6p1pk000aila9m5jgalnba0g54prcj9rgca6q"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + amazonka amazonka-kms base base64 bech32 bytestring cryptonite + dhall lens memory pem text unordered-containers + ]; + executableHaskellDepends = [ + amazonka amazonka-kms base base64 bech32 bytestring cryptonite + dhall lens memory optparse-applicative pem text + unordered-containers + ]; + testHaskellDepends = [ + amazonka amazonka-kms base base64 bech32 bytestring cryptonite + dhall HUnit lens memory pem text unordered-containers + ]; + description = "Encrypt Decrypt Dhall expressions"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "dhall-secret"; + }) {}; + "dhall-text" = callPackage ({ mkDerivation, base, dhall, optparse-applicative, text }: mkDerivation { @@ -79980,37 +79692,6 @@ self: { }: mkDerivation { pname = "dhall-yaml"; - version = "1.2.10"; - sha256 = "1a3g84799lbq7v9bzdq9bcwzyzci07rd1x42325ck4x51hrqs8nn"; - revision = "1"; - editedCabalFile = "1jfzpwbcg17mqk9c2f1lhqjwadxm1k04rd91j4h4gd5wnsvb85i4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring dhall dhall-json HsYAML HsYAML-aeson - optparse-applicative text vector - ]; - executableHaskellDepends = [ - aeson ansi-terminal base bytestring dhall dhall-json exceptions - optparse-applicative prettyprinter prettyprinter-ansi-terminal text - ]; - testHaskellDepends = [ - base bytestring dhall dhall-json tasty tasty-expected-failure - tasty-hunit text - ]; - description = "Convert between Dhall and YAML"; - license = lib.licenses.gpl3Only; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-yaml_1_2_11" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, dhall - , dhall-json, exceptions, HsYAML, HsYAML-aeson - , optparse-applicative, prettyprinter, prettyprinter-ansi-terminal - , tasty, tasty-expected-failure, tasty-hunit, text, vector - }: - mkDerivation { - pname = "dhall-yaml"; version = "1.2.11"; sha256 = "1iqn9gign1y9cysdghxip4gpcp3x4knirlnm3mkin7zbr9hhxflh"; revision = "1"; @@ -80031,7 +79712,6 @@ self: { ]; description = "Convert between Dhall and YAML"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -80379,10 +80059,10 @@ self: { }: mkDerivation { pname = "diagrams-contrib"; - version = "1.4.4"; - sha256 = "043jpr7lqg708lzmv6cqys7312lfdwnf8ijcnpl4jkbvcwl87c1m"; - revision = "7"; - editedCabalFile = "0jwj06c2bqawpr57y2x8hbnjlsl1nv9k7wjxhk56w240qyspmj3p"; + version = "1.4.5"; + sha256 = "0v18a8hyrmpxqi9r30292956afqd4smxnn5v01s66sx382fay2wh"; + revision = "1"; + editedCabalFile = "0i5s9mr88kc68v2wc07jpdy2hzqh2gc1dsawvb2sracnqmv9q658"; libraryHaskellDepends = [ base circle-packing colour containers cubicbezier data-default data-default-class diagrams-core diagrams-lib diagrams-solve @@ -80406,6 +80086,8 @@ self: { pname = "diagrams-core"; version = "1.5.0.1"; sha256 = "1gv1p5hrxi3hks0nb4l38gdgfq9bh9d86b6dxcyzqxrwxbxk1khn"; + revision = "1"; + editedCabalFile = "1gahbyv00xyr4pcmpq4g95jyh7844fp8z0g9l2ybifv4s73vdrym"; libraryHaskellDepends = [ adjunctions base containers distributive dual-tree lens linear monoid-extras mtl profunctors semigroups unordered-containers @@ -80414,6 +80096,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "diagrams-gi-cairo" = callPackage + ({ mkDerivation, array, base, bytestring, colour, containers + , diagrams-core, diagrams-lib, filepath, gi-cairo + , gi-cairo-connector, gi-cairo-render, gi-pango, gi-pangocairo + , hashable, JuicyPixels, mtl, optparse-applicative, split + , statestack, text, unix, vector + }: + mkDerivation { + pname = "diagrams-gi-cairo"; + version = "1.4.2"; + sha256 = "0k6fw1vvqa4pra4czd90n7i7h1vf6hn08a4jip1xbqkf57d89bn6"; + libraryHaskellDepends = [ + array base bytestring colour containers diagrams-core diagrams-lib + filepath gi-cairo gi-cairo-connector gi-cairo-render gi-pango + gi-pangocairo hashable JuicyPixels mtl optparse-applicative split + statestack text unix vector + ]; + description = "Cairo backend for diagrams drawing EDSL"; + license = lib.licenses.bsd3; + }) {}; + "diagrams-graphviz" = callPackage ({ mkDerivation, base, containers, diagrams-lib, fgl, graphviz , split @@ -80444,6 +80147,8 @@ self: { ]; description = "Backend for rendering diagrams directly to GTK windows"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "diagrams-haddock" = callPackage @@ -80552,10 +80257,10 @@ self: { }: mkDerivation { pname = "diagrams-lib"; - version = "1.4.5.1"; - sha256 = "1hkxp549i99s45qk8zmhjvz1xyyv3i0ffl8155bifkic6fd8y2gz"; - revision = "3"; - editedCabalFile = "1s8iyx86hd7p1h08nlmx8dj03fdzbwi417yw1qxc5ivd77ciqj61"; + version = "1.4.5.2"; + sha256 = "1vx51g9znb4a9bf20pjd9zr98wmh39avk2i06217p0iidcw8whz6"; + revision = "1"; + editedCabalFile = "14lxvlxdzkrhdgblgglr5k0rwak0yl4gzawqkfla04mkg6hkh5bb"; libraryHaskellDepends = [ active adjunctions array base bytestring cereal colour containers data-default-class diagrams-core diagrams-solve directory @@ -80587,8 +80292,8 @@ self: { pname = "diagrams-lib"; version = "1.4.5.3"; sha256 = "0h762gc9l4gsbx3r035mkfrwqblwshjaxk943bq277rw9d5vi7ic"; - revision = "1"; - editedCabalFile = "04ss5jkrddlh77gq331w9na3v3gyallqs84vvhj9pfmjcgkbsm1j"; + revision = "3"; + editedCabalFile = "10m1nh6swfh4jvky2mx692g0jp1xk1cym9gvzljmmni3pf41mzsf"; libraryHaskellDepends = [ active adjunctions array base bytestring cereal colour containers data-default-class diagrams-core diagrams-solve directory @@ -80891,7 +80596,9 @@ self: { executableHaskellDepends = [ base ]; description = "I/O in Haskell Report 1.2"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "examples"; + broken = true; }) {}; "dib" = callPackage @@ -81094,6 +80801,17 @@ self: { broken = true; }) {}; + "diff-loc" = callPackage + ({ mkDerivation, base, fingertree, show-combinators }: + mkDerivation { + pname = "diff-loc"; + version = "0.1.0.0"; + sha256 = "08sbxkf804bq3lwr9s1k1vigq7yrdjgicrj114zi14cdi4168k3x"; + libraryHaskellDepends = [ base fingertree show-combinators ]; + description = "Map file locations across diffs"; + license = lib.licenses.mit; + }) {}; + "diff-parse" = callPackage ({ mkDerivation, attoparsec, base, hspec, text }: mkDerivation { @@ -81218,6 +80936,7 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "differential"; + broken = true; }) {}; "diffmap" = callPackage @@ -81285,6 +81004,19 @@ self: { license = lib.licenses.bsd3; }) {inherit (pkgs) zlib;}; + "digest_0_0_1_4" = callPackage + ({ mkDerivation, base, bytestring, zlib }: + mkDerivation { + pname = "digest"; + version = "0.0.1.4"; + sha256 = "05pc5l4bwddszc6vy1hazwi1dnrxg323521gdkis9cvh7zs2a4gr"; + libraryHaskellDepends = [ base bytestring ]; + libraryPkgconfigDepends = [ zlib ]; + description = "Various hashes for bytestrings; CRC32 and Adler32 for now"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) zlib;}; + "digest-pure" = callPackage ({ mkDerivation, array, base, bytestring, digest, QuickCheck }: mkDerivation { @@ -81497,6 +81229,8 @@ self: { ]; description = "Snap backend for the digestive-functors library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "digit" = callPackage @@ -81569,6 +81303,8 @@ self: { testHaskellDepends = [ base fgl hashable massiv QuickCheck ]; description = "Directed Graphs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dihaa" = callPackage @@ -81606,27 +81342,6 @@ self: { "dimensional" = callPackage ({ mkDerivation, base, criterion, deepseq, doctest, exact-pi, Glob , hspec, hspec-discover, ieee754, numtype-dk, QuickCheck - , semigroups, template-haskell, vector - }: - mkDerivation { - pname = "dimensional"; - version = "1.4"; - sha256 = "19w6plp97ylwqgwzhfy54cvjvh0dd1gj843y59cmryckh80jap8s"; - libraryHaskellDepends = [ - base deepseq exact-pi ieee754 numtype-dk semigroups vector - ]; - testHaskellDepends = [ - base doctest Glob hspec QuickCheck template-haskell - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ base criterion deepseq ]; - description = "Statically checked physical dimensions"; - license = lib.licenses.bsd3; - }) {}; - - "dimensional_1_5" = callPackage - ({ mkDerivation, base, criterion, deepseq, doctest, exact-pi, Glob - , hspec, hspec-discover, ieee754, numtype-dk, QuickCheck , template-haskell, vector }: mkDerivation { @@ -81643,7 +81358,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ]; description = "Statically checked physical dimensions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dimensional-codata" = callPackage @@ -81667,7 +81381,6 @@ self: { description = "Statically checked physical dimensions, implemented using type families"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dimensions" = callPackage @@ -81683,6 +81396,7 @@ self: { ]; description = "Safe type-level dimensionality for multidimensional data"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "dingo-core" = callPackage @@ -81793,6 +81507,7 @@ self: { ]; description = "Gemini client"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "diohsc"; }) {}; @@ -82180,8 +81895,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A small library for working with directories"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "disassembler" = callPackage @@ -82308,8 +82021,6 @@ self: { executableHaskellDepends = [ base bytestring text unliftio ]; description = "Write bots for Discord in Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "discord-haskell-voice" = callPackage @@ -82388,6 +82099,7 @@ self: { license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; mainProgram = "discord-register-exe"; + broken = true; }) {}; "discord-rest" = callPackage @@ -82520,36 +82232,6 @@ self: { }: mkDerivation { pname = "discrimination"; - version = "0.4.1"; - sha256 = "0p0hryrp15bc8cjfr2hypkg35fy1m30hr19s9p6rj91cxxgjbfq2"; - revision = "1"; - editedCabalFile = "1iz2vfizkid17m1k9j1a1rdzr44ir2fgw0nnhg1drjlyirc09p9f"; - libraryHaskellDepends = [ - array base containers contravariant deepseq ghc-bignum ghc-prim - hashable primitive promises transformers - ]; - testHaskellDepends = [ - base containers criterion deepseq hashable QuickCheck - quickcheck-instances splitmix tasty tasty-quickcheck - unordered-containers vector vector-algorithms - ]; - benchmarkHaskellDepends = [ - base containers criterion deepseq ghc-prim hashable primitive - splitmix unordered-containers vector vector-algorithms - ]; - description = "Fast generic linear-time sorting, joins and container construction"; - license = lib.licenses.bsd3; - }) {}; - - "discrimination_0_5" = callPackage - ({ mkDerivation, array, base, containers, contravariant, criterion - , deepseq, ghc-bignum, ghc-prim, hashable, primitive, promises - , QuickCheck, quickcheck-instances, splitmix, tasty - , tasty-quickcheck, transformers, unordered-containers, vector - , vector-algorithms - }: - mkDerivation { - pname = "discrimination"; version = "0.5"; sha256 = "1qq7fs1dsfqgf4969gksqcp3swcx0wbzdh66a89fv78k6y94g0pc"; revision = "1"; @@ -82569,7 +82251,6 @@ self: { ]; description = "Fast generic linear-time sorting, joins and container construction"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "disjoint-containers" = callPackage @@ -82649,8 +82330,6 @@ self: { benchmarkHaskellDepends = [ base bytestring text ]; description = "On-disk storage, but referentially transparent"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "disk-free-space" = callPackage @@ -82682,6 +82361,8 @@ self: { ]; description = "Disk-based hash table"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "display" = callPackage @@ -83395,7 +83076,7 @@ self: { ]; description = "Types and functions to manipulate the Nixpkgs distribution"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "distribution-opensuse" = callPackage @@ -83804,54 +83485,29 @@ self: { "dnf-repo" = callPackage ({ mkDerivation, base, directory, extra, filepath, Glob - , http-directory, simple-cmd, simple-cmd-args + , http-directory, simple-cmd, simple-cmd-args, unix }: mkDerivation { pname = "dnf-repo"; - version = "0.5.1"; - sha256 = "158gfmdwf77yd623782pjv4702xjnqfr5dxwl4chrbanvsdfg7si"; + version = "0.5.2"; + sha256 = "0h3ik35jr1x142lsdififxkh6zz8c0frw3vvfn4nzg7cx5dxa1ng"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; executableHaskellDepends = [ base directory extra filepath Glob http-directory simple-cmd - simple-cmd-args + simple-cmd-args unix ]; testHaskellDepends = [ base simple-cmd ]; description = "DNF wrapper tool to control repos"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dnf-repo"; - broken = true; }) {}; "dns" = callPackage ({ mkDerivation, array, async, attoparsec, auto-update, base , base16-bytestring, base64-bytestring, bytestring, containers - , cryptonite, doctest, hourglass, hspec, iproute, mtl, network - , psqueues, QuickCheck, word8 - }: - mkDerivation { - pname = "dns"; - version = "4.0.1"; - sha256 = "1jv89bdhvwb51d9h9157k2r1cg7x0gzari91lddwvghrkx8v9k90"; - libraryHaskellDepends = [ - array async attoparsec auto-update base base16-bytestring - base64-bytestring bytestring containers cryptonite hourglass - iproute mtl network psqueues - ]; - testHaskellDepends = [ - base bytestring doctest hspec iproute network QuickCheck word8 - ]; - doHaddock = false; - testTarget = "spec"; - description = "DNS library in Haskell"; - license = lib.licenses.bsd3; - }) {}; - - "dns_4_1_0" = callPackage - ({ mkDerivation, array, async, attoparsec, auto-update, base - , base16-bytestring, base64-bytestring, bytestring, containers , cryptonite, doctest, hourglass, hspec, hspec-discover, iproute , mtl, network, psqueues, QuickCheck, word8 }: @@ -83872,7 +83528,6 @@ self: { testTarget = "spec"; description = "DNS library in Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dns-patterns" = callPackage @@ -83892,8 +83547,6 @@ self: { ]; description = "DNS name parsing and pattern matching utilities"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dnscache" = callPackage @@ -83914,6 +83567,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "massdns"; + broken = true; }) {}; "dnsrbl" = callPackage @@ -83967,8 +83621,6 @@ self: { testHaskellDepends = [ base indexed ]; description = "Generalize do-notation to work on monads and indexed monads simultaneously"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "do-notation-dsl" = callPackage @@ -84054,7 +83706,6 @@ self: { libraryHaskellDepends = [ base dobutokO-frequency ]; description = "A library to deal with SoX effects and possibilities"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "dobutokO-frequency" = callPackage @@ -84066,8 +83717,6 @@ self: { libraryHaskellDepends = [ base ]; description = "Helps to create experimental music. Working with frequencies and types."; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dobutokO-poetry" = callPackage @@ -84381,25 +84030,6 @@ self: { }) {}; "doclayout" = callPackage - ({ mkDerivation, base, containers, criterion, emojis, mtl, safe - , tasty, tasty-golden, tasty-hunit, tasty-quickcheck, text - }: - mkDerivation { - pname = "doclayout"; - version = "0.3.1.1"; - sha256 = "1p9kgjlf7y4p1symvkwndgs4lvyw2c45bsgld09y9r4aiqbhdrxp"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base containers emojis mtl safe text ]; - testHaskellDepends = [ - base emojis mtl tasty tasty-golden tasty-hunit tasty-quickcheck - text - ]; - benchmarkHaskellDepends = [ base criterion mtl text ]; - description = "A prettyprinting library for laying out text documents"; - license = lib.licenses.bsd3; - }) {}; - - "doclayout_0_4" = callPackage ({ mkDerivation, base, containers, criterion, deepseq, emojis, mtl , safe, tasty, tasty-golden, tasty-hunit, tasty-quickcheck, text }: @@ -84420,7 +84050,6 @@ self: { ]; description = "A prettyprinting library for laying out text documents"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "docopt" = callPackage @@ -84441,6 +84070,8 @@ self: { ]; description = "A command-line interface parser that will make you smile"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "docrecords" = callPackage @@ -84488,8 +84119,10 @@ self: { }: mkDerivation { pname = "doctemplates"; - version = "0.10.0.1"; - sha256 = "08l8lgmvn83xwbdlh4m2jljj5gcyxiq1vjd1ggysv36d81swsg1x"; + version = "0.10.0.2"; + sha256 = "0as0sc4x4ch5z233dqlb8xqg97xbfbzw2dqsz9rfq8rw10v9yx57"; + revision = "1"; + editedCabalFile = "17r6ig72bzqd59p11sjaf9y27pm4yig1a1s1igs57s88cy47qz05"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base containers doclayout filepath HsYAML mtl parsec safe @@ -84506,22 +84139,20 @@ self: { license = lib.licenses.bsd3; }) {}; - "doctemplates_0_10_0_2" = callPackage + "doctemplates_0_11" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion - , doclayout, filepath, Glob, HsYAML, mtl, parsec, safe, scientific - , tasty, tasty-golden, tasty-hunit, temporary, text - , text-conversions, vector + , doclayout, filepath, Glob, mtl, parsec, safe, scientific, tasty + , tasty-golden, tasty-hunit, temporary, text, text-conversions + , vector }: mkDerivation { pname = "doctemplates"; - version = "0.10.0.2"; - sha256 = "0as0sc4x4ch5z233dqlb8xqg97xbfbzw2dqsz9rfq8rw10v9yx57"; - revision = "1"; - editedCabalFile = "17r6ig72bzqd59p11sjaf9y27pm4yig1a1s1igs57s88cy47qz05"; + version = "0.11"; + sha256 = "0ssld40km4nf0r8fxgj9w0z8yfy8yiyyfcgxarhwx60f0dzhq270"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson base containers doclayout filepath HsYAML mtl parsec safe - scientific text text-conversions vector + aeson base containers doclayout filepath mtl parsec safe scientific + text text-conversions vector ]; testHaskellDepends = [ aeson base bytestring containers doclayout filepath Glob tasty @@ -84535,7 +84166,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "doctest" = callPackage + "doctest_0_18_2" = callPackage ({ mkDerivation, base, base-compat, code-page, deepseq, directory , exceptions, filepath, ghc, ghc-paths, hspec, hspec-core, HUnit , mockery, process, QuickCheck, setenv, silently, stringbuilder @@ -84562,10 +84193,11 @@ self: { ]; description = "Test interactive Haskell examples"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "doctest"; }) {}; - "doctest_0_20_1" = callPackage + "doctest" = callPackage ({ mkDerivation, base, base-compat, code-page, deepseq, directory , exceptions, filepath, ghc, ghc-paths, hspec, hspec-core , hspec-discover, HUnit, mockery, process, QuickCheck, setenv @@ -84593,7 +84225,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Test interactive Haskell examples"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "doctest"; }) {}; @@ -84663,6 +84294,23 @@ self: { mainProgram = "doctest-driver-gen"; }) {}; + "doctest-driver-gen_0_3_0_6" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "doctest-driver-gen"; + version = "0.3.0.6"; + sha256 = "0a4jdg4mzhdgfal7jp60yrlv63iv7d8f7nxc9aqvrl93mairny8l"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; + description = "Generate driver file for doctest's cabal integration"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "doctest-driver-gen"; + }) {}; + "doctest-exitcode-stdio" = callPackage ({ mkDerivation, base, doctest-lib, QuickCheck, semigroups , transformers @@ -84698,7 +84346,9 @@ self: { ]; description = "Alternative doctest implementation that extracts comments to modules"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "doctest-extract-0.1"; + broken = true; }) {}; "doctest-lib" = callPackage @@ -84723,6 +84373,8 @@ self: { pname = "doctest-parallel"; version = "0.2.5"; sha256 = "075y4yllpgfq0dlfd6y9nqhsdkxzb9s3jgb0v194l216kg5zsqzc"; + revision = "1"; + editedCabalFile = "1q81qjz9af9a57xyxz6kci28shl4r9y3lrl3rckknhqwcy1ahqz4"; libraryHaskellDepends = [ base base-compat Cabal code-page containers deepseq directory exceptions extra filepath ghc ghc-paths Glob pretty process random @@ -84997,8 +84649,8 @@ self: { }: mkDerivation { pname = "domain"; - version = "0.1.1.3"; - sha256 = "0szq40sxd3cpq5mbgq9293643a5j45mr1p03lkxwny8xxhz6hs5a"; + version = "0.1.1.4"; + sha256 = "0fdpbcn2cyfpkp8qln87b27fqrsy95n7sb2x3bpwhbr5dzz55ih2"; libraryHaskellDepends = [ attoparsec base bytestring domain-core foldl hashable parser-combinators template-haskell template-haskell-compat-v0208 @@ -85011,7 +84663,6 @@ self: { ]; description = "Codegen helping you define domain models"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "domain-aeson" = callPackage @@ -85031,7 +84682,6 @@ self: { testHaskellDepends = [ domain rerebase ]; description = "Integration of domain with aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "domain-auth" = callPackage @@ -85068,7 +84718,6 @@ self: { testHaskellDepends = [ cereal cereal-text domain rerebase ]; description = "Integration of domain with cereal"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "domain-core" = callPackage @@ -85077,8 +84726,8 @@ self: { }: mkDerivation { pname = "domain-core"; - version = "0.1.0.2"; - sha256 = "1x21f9nsikcbvf977sm4ckfc2cqfvkkk315kdax66sbd8f2ipgm2"; + version = "0.1.0.3"; + sha256 = "0wpi5qks29ij8m1s6x3kc66dw706xn28l6vlwfrccqw77603g85a"; libraryHaskellDepends = [ base template-haskell template-haskell-compat-v0208 text th-lego th-lift-instances @@ -85104,6 +84753,7 @@ self: { description = "Integration of domain with optics"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dominion" = callPackage @@ -85255,25 +84905,25 @@ self: { "dotenv" = callPackage ({ mkDerivation, base, base-compat, containers, directory , exceptions, hspec, hspec-discover, hspec-megaparsec, megaparsec - , optparse-applicative, process, text + , optparse-applicative, process, shellwords, text }: mkDerivation { pname = "dotenv"; - version = "0.9.0.2"; - sha256 = "0f0kzkkfvk7bmlxzq2z7b1rr374aa4qlh8pklbjaqg0drfhyyk6a"; + version = "0.9.0.3"; + sha256 = "163w2japbcdjzmhr7afq2rss7sp7gz2j8mylcc716x63gm3ws20h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base base-compat containers directory exceptions megaparsec process - text + shellwords text ]; executableHaskellDepends = [ base base-compat megaparsec optparse-applicative process text ]; testHaskellDepends = [ base base-compat containers directory exceptions hspec - hspec-megaparsec megaparsec process text + hspec-megaparsec megaparsec process shellwords text ]; testToolDepends = [ hspec-discover ]; description = "Loads environment variables from dotenv files"; @@ -85281,15 +84931,15 @@ self: { mainProgram = "dotenv"; }) {}; - "dotenv_0_9_0_3" = callPackage + "dotenv_0_10_0_0" = callPackage ({ mkDerivation, base, base-compat, containers, directory , exceptions, hspec, hspec-discover, hspec-megaparsec, megaparsec , optparse-applicative, process, shellwords, text }: mkDerivation { pname = "dotenv"; - version = "0.9.0.3"; - sha256 = "163w2japbcdjzmhr7afq2rss7sp7gz2j8mylcc716x63gm3ws20h"; + version = "0.10.0.0"; + sha256 = "04brkjk9a17xv2qv2xbsdxbil6ncrrzxcfji9q0civmxhj4vbcfq"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -85386,6 +85036,7 @@ self: { description = "dot language parsing and printing"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "double-conversion" = callPackage @@ -85396,6 +85047,27 @@ self: { pname = "double-conversion"; version = "2.0.4.1"; sha256 = "1hrpqh8lbw0kkryqsya95mfnnnj0pj7zswxrn6kvfy4rf7z8v2d4"; + revision = "2"; + editedCabalFile = "0qya075j3kz4jq1kx4951qvi9blh6hcqfd7vpcx8l8ql143ajvqs"; + libraryHaskellDepends = [ base bytestring ghc-prim text ]; + testHaskellDepends = [ + base bytestring HUnit test-framework test-framework-hunit + test-framework-quickcheck2 text + ]; + description = "Fast conversion between single and double precision floating point and text"; + license = lib.licenses.bsd3; + }) {}; + + "double-conversion_2_0_4_2" = callPackage + ({ mkDerivation, base, bytestring, ghc-prim, HUnit, test-framework + , test-framework-hunit, test-framework-quickcheck2, text + }: + mkDerivation { + pname = "double-conversion"; + version = "2.0.4.2"; + sha256 = "0r7c1801gzdm5x1flmpx8ajxygbc9dl7sgdj0xn3bpm71wgvrf4s"; + revision = "2"; + editedCabalFile = "1mpnx4m2pg5crfz9k8wamh5mgsha0np3ynnllrmglmwh54gvfjj3"; libraryHaskellDepends = [ base bytestring ghc-prim text ]; testHaskellDepends = [ base bytestring HUnit test-framework test-framework-hunit @@ -85403,6 +85075,7 @@ self: { ]; description = "Fast conversion between single and double precision floating point and text"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "double-extra" = callPackage @@ -85577,8 +85250,6 @@ self: { ]; description = "Reverse mode automatic differentiation"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "download" = callPackage @@ -85894,16 +85565,17 @@ self: { "dr-cabal" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, async, base , bytestring, colourista, optparse-applicative, relude + , terminal-size }: mkDerivation { pname = "dr-cabal"; - version = "0.1.0.0"; - sha256 = "046fm8pdbz2kib4n2nravy15skqwl031j4f0m58d0x0ksjq5yq4i"; + version = "0.2.0.0"; + sha256 = "066016xcg3nhjs8b746kyi05r7gcsglqv7rkz2py54pvi1p7sj35"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-pretty ansi-terminal async base bytestring colourista - optparse-applicative relude + optparse-applicative relude terminal-size ]; executableHaskellDepends = [ base relude ]; description = "See README for more info"; @@ -85964,7 +85636,6 @@ self: { executableHaskellDepends = [ base ]; description = "Actor library for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "draw-poker" = callPackage @@ -86091,8 +85762,6 @@ self: { libraryHaskellDepends = [ base exceptions mtl transformers ]; description = "Boozy streaming library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "driving-classes-plugin" = callPackage @@ -86228,6 +85897,8 @@ self: { libraryHaskellDepends = [ array base bytestring pureMD5 ]; description = "An implementation of the Drunken Bishop visual fingerprinting algorithm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ds-kanren" = callPackage @@ -86509,6 +86180,7 @@ self: { description = "(Fast) Dynamic Time Warping"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dual" = callPackage @@ -86685,6 +86357,7 @@ self: { description = "A computer “algebra” system that knows nothing about algebra, at the core"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dump" = callPackage @@ -86732,23 +86405,6 @@ self: { }: mkDerivation { pname = "dunai"; - version = "0.8.3"; - sha256 = "1xkc7a337g6xg2wgj1sphpmvj22y2fkifs36s7iws7cr7fqx1a1p"; - libraryHaskellDepends = [ - base MonadRandom simple-affine-space transformers transformers-base - ]; - testHaskellDepends = [ base tasty tasty-hunit transformers ]; - description = "Generalised reactive framework supporting classic, arrowized and monadic FRP"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.turion ]; - }) {}; - - "dunai_0_9_1" = callPackage - ({ mkDerivation, base, MonadRandom, simple-affine-space, tasty - , tasty-hunit, transformers, transformers-base - }: - mkDerivation { - pname = "dunai"; version = "0.9.1"; sha256 = "0krgbs9xqar78815xrgqbj63678jm0mjbsvnqdayh0c2awf9i8bj"; libraryHaskellDepends = [ @@ -86757,7 +86413,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit transformers ]; description = "Generalised reactive framework supporting classic, arrowized and monadic FRP"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -86858,6 +86513,8 @@ self: { ]; description = "A tiny compile-time time utility library inspired by zeit/ms"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dustme" = callPackage @@ -87141,6 +86798,8 @@ self: { testHaskellDepends = [ base ]; description = "FRP for brick Terminal user interface library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dyna-gloss" = callPackage @@ -87827,6 +87486,7 @@ self: { ]; description = "Pure, type-indexed haskell vector, matrix, and tensor library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "easytensor-vulkan" = callPackage @@ -87838,6 +87498,7 @@ self: { libraryHaskellDepends = [ base dimensions easytensor vulkan-api ]; description = "Use easytensor with vulkan-api"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "easytest" = callPackage @@ -87951,6 +87612,8 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion random ]; description = "Elliptic Curve Cryptography for Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "eccrypto-ed25519-bindings" = callPackage @@ -87963,7 +87626,6 @@ self: { description = "provides \"ed25519\" API using \"eccrypto\""; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ecdsa" = callPackage @@ -88530,7 +88192,6 @@ self: { description = "Embeds effect systems and program logics into Haskell using graded monads and parameterised monads"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "effect-stack" = callPackage @@ -88760,6 +88421,7 @@ self: { description = "Simulation interpreter for FLINT policy descriptions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "egison" = callPackage @@ -88943,8 +88605,6 @@ self: { ]; description = "Minimalistic SMTP client for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ehs" = callPackage @@ -89023,7 +88683,9 @@ self: { executableToolDepends = [ markdown-unlit ]; description = "IO with Exceptions tracked on the type-level"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; mainProgram = "readme"; + broken = true; }) {}; "either" = callPackage @@ -89409,6 +89071,29 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "elasticsearch-interchange" = callPackage + ({ mkDerivation, base, bytebuild, byteslice, bytestring, json-query + , json-syntax, pretty-show, primitive, tasty, tasty-golden + , text-short, unpacked-maybe-text + }: + mkDerivation { + pname = "elasticsearch-interchange"; + version = "0.1.0.0"; + sha256 = "0js90hcq3m1b928fywcvm8yyc1d35ya630zxdxpbylmqv4h0yz6y"; + libraryHaskellDepends = [ + base bytebuild json-query json-syntax primitive text-short + unpacked-maybe-text + ]; + testHaskellDepends = [ + base bytebuild byteslice bytestring json-query json-syntax + pretty-show primitive tasty tasty-golden text-short + unpacked-maybe-text + ]; + description = "Serialization of Elasticsearch requests and responses"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "elbow" = callPackage ({ mkDerivation, base, hmatrix, safe }: mkDerivation { @@ -89535,8 +89220,8 @@ self: { }: mkDerivation { pname = "eliminators"; - version = "0.8"; - sha256 = "00prqf3qnhsswigcx87nq9dfaq9vjvzgcgbpnxrpgw9k36p9mdh2"; + version = "0.9"; + sha256 = "118bd51hfbh29yhs9ai3srk431avwsmccm1500mp21fbwxq8phsj"; libraryHaskellDepends = [ base extra singleton-nats singletons-base template-haskell th-abstraction th-desugar @@ -89545,6 +89230,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Dependently typed elimination functions using singletons"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "eliminators_0_9_1" = callPackage @@ -90041,8 +89727,8 @@ self: { }: mkDerivation { pname = "elminator"; - version = "0.2.4.1"; - sha256 = "0b8xn26k2pmb7m5v6yn1l2kv4fv94qjl7k8563zq2aqkrfwdm068"; + version = "0.2.4.2"; + sha256 = "1icmj116hlmgjbss1fnbzav327dl5ga8l092791rc5bf6m0m644z"; libraryHaskellDepends = [ aeson base containers mtl template-haskell text ]; @@ -90051,8 +89737,6 @@ self: { ]; description = "Generate ELM types/encoders/decoders from Haskell types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "elo" = callPackage @@ -90121,25 +89805,6 @@ self: { }: mkDerivation { pname = "elynx"; - version = "0.6.1.1"; - sha256 = "16kqf4v9ikrd6w19zg3lrpy69xsdhr0p1hni72wi2i8glrzmq4qw"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - aeson base bytestring elynx-tools optparse-applicative slynx tlynx - ]; - description = "Validate and (optionally) redo ELynx analyses"; - license = lib.licenses.gpl3Plus; - mainProgram = "elynx"; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx_0_7_0_1" = callPackage - ({ mkDerivation, aeson, base, bytestring, elynx-tools - , optparse-applicative, slynx, tlynx - }: - mkDerivation { - pname = "elynx"; version = "0.7.0.1"; sha256 = "1r2d3v2y4xmqf45d7649d54f1dsrywil2km40qx951adrawp8g0q"; isLibrary = false; @@ -90149,7 +89814,6 @@ self: { ]; description = "Validate and (optionally) redo ELynx analyses"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "elynx"; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -90157,28 +89821,6 @@ self: { "elynx-markov" = callPackage ({ mkDerivation, async, attoparsec, base, bytestring, containers , elynx-seq, elynx-tools, hmatrix, hspec, integration - , math-functions, mwc-random, primitive, statistics, vector - }: - mkDerivation { - pname = "elynx-markov"; - version = "0.6.1.1"; - sha256 = "1xwvnfyil8kp2qxcv8h4k623qn8kajp8mj4a6jbjjp8qk70rlbrf"; - libraryHaskellDepends = [ - async attoparsec base bytestring containers elynx-seq hmatrix - integration math-functions mwc-random primitive statistics vector - ]; - testHaskellDepends = [ - base containers elynx-tools hmatrix hspec mwc-random vector - ]; - benchmarkHaskellDepends = [ base ]; - description = "Simulate molecular sequences along trees"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-markov_0_7_0_1" = callPackage - ({ mkDerivation, async, attoparsec, base, bytestring, containers - , elynx-seq, elynx-tools, hmatrix, hspec, integration , math-functions, mwc-random, random, statistics, vector }: mkDerivation { @@ -90195,7 +89837,6 @@ self: { benchmarkHaskellDepends = [ base ]; description = "Simulate molecular sequences along trees"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -90203,52 +89844,17 @@ self: { ({ mkDerivation, attoparsec, base, bytestring, hspec }: mkDerivation { pname = "elynx-nexus"; - version = "0.6.1.1"; - sha256 = "0qx28djaj3k56wp0qqcdy7zn90alr24q05l9a93qp0wqahlwmgy3"; - libraryHaskellDepends = [ attoparsec base bytestring ]; - testHaskellDepends = [ base hspec ]; - description = "Import and export Nexus files"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-nexus_0_7_0_1" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, hspec }: - mkDerivation { - pname = "elynx-nexus"; version = "0.7.0.1"; sha256 = "0rf1ydwhglcnvp3cdqhij859c3gn7l54nazw4501b6wj59ky7p75"; libraryHaskellDepends = [ attoparsec base bytestring ]; testHaskellDepends = [ base hspec ]; description = "Import and export Nexus files"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-seq" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers - , elynx-tools, hspec, matrices, mwc-random, parallel, primitive - , vector, vector-th-unbox, word8 - }: - mkDerivation { - pname = "elynx-seq"; - version = "0.6.1.1"; - sha256 = "1mcdg4nv9hdmw0lcr2vhy748d3ykcrlplc8hz14ywkxaxlrqb1sm"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring containers matrices mwc-random - parallel primitive vector vector-th-unbox word8 - ]; - testHaskellDepends = [ - base bytestring elynx-tools hspec matrices vector - ]; - description = "Handle molecular sequences"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-seq_0_7_0_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , elynx-tools, hspec, matrices, parallel, primitive, random, vector , vector-th-unbox, word8 }: @@ -90265,32 +89871,11 @@ self: { ]; description = "Handle molecular sequences"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-tools" = callPackage ({ mkDerivation, aeson, attoparsec, base, base16-bytestring - , bytestring, cryptohash-sha256, directory, hmatrix, mwc-random - , optparse-applicative, template-haskell, time, transformers - , vector, zlib - }: - mkDerivation { - pname = "elynx-tools"; - version = "0.6.1.1"; - sha256 = "089dgc8c2y4wxhi0xgvql5yfgfbpwnj8sg88hl7nvgnw5sh4jvs2"; - libraryHaskellDepends = [ - aeson attoparsec base base16-bytestring bytestring - cryptohash-sha256 directory hmatrix mwc-random optparse-applicative - template-haskell time transformers vector zlib - ]; - description = "Tools for ELynx"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-tools_0_7_0_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base16-bytestring , bytestring, cryptohash-sha256, directory, hmatrix , optparse-applicative, random, template-haskell, time , transformers, zlib @@ -90306,7 +89891,6 @@ self: { ]; description = "Tools for ELynx"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -90314,34 +89898,6 @@ self: { ({ mkDerivation, aeson, attoparsec, base, bytestring, comonad , containers, criterion, data-default, data-default-class, deepseq , double-conversion, elynx-nexus, elynx-tools, hspec - , math-functions, microlens, mwc-random, parallel, primitive - , QuickCheck, quickcheck-classes, statistics - }: - mkDerivation { - pname = "elynx-tree"; - version = "0.6.1.1"; - sha256 = "0jhr5czybmp98cxzipa01wjkxz9jbryqlj02lcmbxlal7sqifsy4"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring comonad containers - data-default-class deepseq double-conversion elynx-nexus - math-functions mwc-random parallel primitive statistics - ]; - testHaskellDepends = [ - attoparsec base bytestring containers data-default elynx-tools - hspec QuickCheck quickcheck-classes - ]; - benchmarkHaskellDepends = [ - base criterion elynx-tools microlens mwc-random parallel - ]; - description = "Handle phylogenetic trees"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-tree_0_7_0_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, comonad - , containers, criterion, data-default, data-default-class, deepseq - , double-conversion, elynx-nexus, elynx-tools, hspec , math-functions, microlens, parallel, QuickCheck , quickcheck-classes, random, statistics }: @@ -90363,44 +89919,74 @@ self: { ]; description = "Handle phylogenetic trees"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "ema" = callPackage - ({ mkDerivation, aeson, async, base, blaze-html, blaze-markup - , constraints-extras, containers, data-default, dependent-sum - , dependent-sum-template, directory, file-embed, filepath - , filepattern, fsnotify, generic-optics, generics-sop, http-types - , lvar, monad-logger, monad-logger-extras, mtl, neat-interpolation - , optics-core, optparse-applicative, pandoc, pandoc-types - , raw-strings-qq, relude, sop-core, template-haskell, text, time - , unionmount, unliftio, url-slug, wai, wai-middleware-static - , wai-websockets, warp, websockets + ({ mkDerivation, aeson, async, base, constraints-extras + , data-default, dependent-sum, dependent-sum-template, directory + , file-embed, filepath, filepattern, http-types, lvar, monad-logger + , monad-logger-extras, mtl, neat-interpolation, optics-core + , optparse-applicative, relude, sop-core, text, unliftio, url-slug + , wai, wai-middleware-static, wai-websockets, warp, websockets }: mkDerivation { pname = "ema"; - version = "0.8.2.0"; - sha256 = "158n1qizqncl4q4szk9jwjdnj1y0jsbpzyi4hjslk4zkvkkscwqa"; + version = "0.10.0.0"; + sha256 = "0ayr42l8jwnapr6hkawjv7x9xx2b6dm4bhj2f4qy70jg2w1j6cv9"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson async base blaze-html blaze-markup constraints-extras - containers data-default dependent-sum dependent-sum-template - directory file-embed filepath filepattern fsnotify generic-optics - generics-sop http-types lvar monad-logger monad-logger-extras mtl - neat-interpolation optics-core optparse-applicative pandoc - pandoc-types relude sop-core template-haskell text time unionmount - unliftio url-slug wai wai-middleware-static wai-websockets warp - websockets - ]; - testHaskellDepends = [ - base generics-sop raw-strings-qq template-haskell text url-slug + aeson async base constraints-extras data-default dependent-sum + dependent-sum-template directory file-embed filepath filepattern + http-types lvar monad-logger monad-logger-extras mtl + neat-interpolation optics-core optparse-applicative relude sop-core + text unliftio url-slug wai wai-middleware-static wai-websockets + warp websockets ]; description = "Static site generator library with hot reload"; license = lib.licenses.agpl3Only; maintainers = [ lib.maintainers.maralorn ]; }) {}; + "ema-extra" = callPackage + ({ mkDerivation, base, containers, data-default, dependent-sum, ema + , ema-generics, filepath, generics-sop, monad-logger, optics-core + , pandoc, relude, sop-core, text, time, unionmount, unliftio + , url-slug + }: + mkDerivation { + pname = "ema-extra"; + version = "0.10.0.0"; + sha256 = "0knp37kxhkk6chbbxdrlj39s3wq081j2jjaln73cwvvkrsr09bpv"; + libraryHaskellDepends = [ + base containers data-default dependent-sum ema ema-generics + filepath generics-sop monad-logger optics-core pandoc relude + sop-core text time unionmount unliftio url-slug + ]; + description = "Useful route types for Ema"; + license = lib.licenses.agpl3Only; + }) {}; + + "ema-generics" = callPackage + ({ mkDerivation, base, ema, generic-optics, generics-sop + , optics-core, raw-strings-qq, relude, sop-core, template-haskell + , text, url-slug + }: + mkDerivation { + pname = "ema-generics"; + version = "0.10.0.0"; + sha256 = "03a2ayxiaa12x0y9388rh10ixprbivjrv7w7rgy1mxk0649f024a"; + libraryHaskellDepends = [ + base ema generic-optics generics-sop optics-core relude sop-core + template-haskell + ]; + testHaskellDepends = [ + base ema generics-sop raw-strings-qq template-haskell text url-slug + ]; + description = "Generic deriving for Ema routes"; + license = lib.licenses.agpl3Only; + }) {}; + "emacs-keys" = callPackage ({ mkDerivation, base, doctest, split, tasty, tasty-hspec , tasty-quickcheck, template-haskell, th-lift, xkbcommon @@ -90502,8 +90088,8 @@ self: { }: mkDerivation { pname = "email-validate"; - version = "2.3.2.16"; - sha256 = "1cr3y23d1a8kkbfjwmqr6lvd330k3lh8p1c8pqjswy5sq5az3rdq"; + version = "2.3.2.18"; + sha256 = "11bi5y5qmri62nl34nl5pv4zs59bjpjknw560yw5ds62gsi2sjcp"; libraryHaskellDepends = [ attoparsec base bytestring template-haskell ]; @@ -90595,30 +90181,31 @@ self: { "emanote" = callPackage ({ mkDerivation, aeson, aeson-extra, aeson-optics, async, base , blaze-html, bytestring, commonmark, commonmark-extensions - , commonmark-pandoc, commonmark-simple, containers, data-default - , dependent-sum, directory, ema, filepath, filepattern, fsnotify - , hedgehog, heist-emanote, heist-extra, hspec, hspec-hedgehog - , ixset-typed, lvar, map-syntax, megaparsec, monad-logger - , monad-logger-extras, mtl, neat-interpolation, optics-core - , optics-th, optparse-applicative, pandoc, pandoc-link-context - , pandoc-types, parsec, path-tree, process-extras, profunctors - , relude, shower, some, stm, tagged, tagtree, tailwind, text, time - , tomland, unionmount, unliftio, unordered-containers, uri-encode - , url-slug, uuid, which, with-utf8, xmlhtml, yaml + , commonmark-pandoc, commonmark-simple, commonmark-wikilink + , containers, data-default, dependent-sum, directory, ema, filepath + , filepattern, fsnotify, hedgehog, heist, heist-extra, hspec + , hspec-hedgehog, ixset-typed, lvar, map-syntax, megaparsec + , monad-logger, monad-logger-extras, mtl, neat-interpolation + , optics-core, optics-th, optparse-applicative, pandoc + , pandoc-link-context, pandoc-types, parsec, path-tree + , process-extras, profunctors, relude, shower, some, stm, tagged + , tagtree, tailwind, text, time, tomland, unionmount, unliftio + , unordered-containers, uri-encode, url-slug, uuid, which + , with-utf8, xmlhtml, yaml }: mkDerivation { pname = "emanote"; - version = "0.8.0.0"; - sha256 = "0w26417vx76lzi6b84c48s462bmsy28ayn8gxi9cpgqifrmydz78"; + version = "1.0.0.0"; + sha256 = "0yysrrcdgp06d0s50am86xzjp4d67d1in5ibwdpvbv9knxnk8w5v"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson aeson-extra aeson-optics async base blaze-html bytestring commonmark commonmark-extensions commonmark-pandoc - commonmark-simple containers data-default dependent-sum directory - ema filepath filepattern fsnotify hedgehog heist-emanote - heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax + commonmark-simple commonmark-wikilink containers data-default + dependent-sum directory ema filepath filepattern fsnotify hedgehog + heist heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax megaparsec monad-logger monad-logger-extras mtl neat-interpolation optics-core optics-th optparse-applicative pandoc pandoc-link-context pandoc-types parsec path-tree process-extras @@ -90629,9 +90216,22 @@ self: { executableHaskellDepends = [ aeson aeson-extra aeson-optics async base blaze-html bytestring commonmark commonmark-extensions commonmark-pandoc - commonmark-simple containers data-default dependent-sum directory - ema filepath filepattern fsnotify hedgehog heist-emanote - heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax + commonmark-simple commonmark-wikilink containers data-default + dependent-sum directory ema filepath filepattern fsnotify hedgehog + heist heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax + megaparsec monad-logger monad-logger-extras mtl neat-interpolation + optics-core optics-th optparse-applicative pandoc + pandoc-link-context pandoc-types parsec path-tree process-extras + profunctors relude shower some stm tagged tagtree tailwind text + time tomland unionmount unliftio unordered-containers uri-encode + url-slug uuid which with-utf8 xmlhtml yaml + ]; + testHaskellDepends = [ + aeson aeson-extra aeson-optics async base blaze-html bytestring + commonmark commonmark-extensions commonmark-pandoc + commonmark-simple commonmark-wikilink containers data-default + dependent-sum directory ema filepath filepattern fsnotify hedgehog + heist heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax megaparsec monad-logger monad-logger-extras mtl neat-interpolation optics-core optics-th optparse-applicative pandoc pandoc-link-context pandoc-types parsec path-tree process-extras @@ -90753,6 +90353,7 @@ self: { ]; description = "Empirical Mode Decomposition and Hilbert-Huang Transform"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "emgm" = callPackage @@ -90876,6 +90477,8 @@ self: { ]; description = "Safe string conversion and encoding"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "encoding" = callPackage @@ -90956,6 +90559,8 @@ self: { ]; description = "Endomorphism utilities"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "eng-stemmer" = callPackage @@ -91547,25 +91152,12 @@ self: { ({ mkDerivation, base, containers, hspec, text }: mkDerivation { pname = "envparse"; - version = "0.4.1"; - sha256 = "00133c2wcxw8hj93srg39l539zvsahiz6jl4pi6wf6lc1zqdm0d1"; - libraryHaskellDepends = [ base containers ]; - testHaskellDepends = [ base containers hspec text ]; - description = "Parse environment variables"; - license = lib.licenses.bsd3; - }) {}; - - "envparse_0_5_0" = callPackage - ({ mkDerivation, base, containers, hspec, text }: - mkDerivation { - pname = "envparse"; version = "0.5.0"; sha256 = "07fvq07x4i6swcryv3i0vj197zrj8rvvy2vp9q9cvj28xzj4mddd"; libraryHaskellDepends = [ base containers ]; testHaskellDepends = [ base containers hspec text ]; description = "Parse environment variables"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "envstatus" = callPackage @@ -91743,8 +91335,6 @@ self: { libraryHaskellDepends = [ base exceptions mtl ]; description = "Basic Erlang-like process support for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "epub" = callPackage @@ -91856,7 +91446,9 @@ self: { ]; description = "Shell command for finding equal files"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "equal-files"; + broken = true; }) {}; "equational-reasoning" = callPackage @@ -91867,8 +91459,8 @@ self: { pname = "equational-reasoning"; version = "0.7.0.1"; sha256 = "1xp5vmz19idc29xidr7q65hsnhfnl3ca80hxxfllsqpyyh32qlhn"; - revision = "1"; - editedCabalFile = "0bi5xmaq5cbs1jqz6naw4706wv5yjgx1g4vibp872iqzcjc86yka"; + revision = "2"; + editedCabalFile = "0gi4whsdzlkpmqjpvlzv29jhxmia8xx1ni17ay9nw41lw4q5zg8v"; libraryHaskellDepends = [ base containers template-haskell th-desugar void ]; @@ -91979,6 +91571,7 @@ self: { libraryHaskellDepends = [ base polynomial ]; description = "Native Haskell implementation of the interface from the erf package"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "erlang" = callPackage @@ -92108,25 +91701,12 @@ self: { ({ mkDerivation, base, doctest, text }: mkDerivation { pname = "error"; - version = "0.3.0.0"; - sha256 = "1vbmfjcx82b5ngzqda74j4xwqhzwhgl9ikh65ipzk2x26fzkww84"; - libraryHaskellDepends = [ base text ]; - testHaskellDepends = [ base doctest ]; - description = "The canonical error type"; - license = lib.licenses.mit; - }) {}; - - "error_1_0_0_0" = callPackage - ({ mkDerivation, base, doctest, text }: - mkDerivation { - pname = "error"; version = "1.0.0.0"; sha256 = "12c8vk6jxphwympivfalr5xz3pyk3imsbbfyqcyranss65ji5k3b"; libraryHaskellDepends = [ base text ]; testHaskellDepends = [ base doctest ]; description = "The canonical error type"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "error-analyze" = callPackage @@ -92247,25 +91827,11 @@ self: { ({ mkDerivation, base, containers, mtl, text }: mkDerivation { pname = "error-or"; - version = "0.2.0.0"; - sha256 = "0wpw8ms1rxc8zhdcr078bang10jl2wkd0ji944knzcvspfnx9hib"; - revision = "1"; - editedCabalFile = "16zplgyfdqcqfnrf4w67fl993akn7dpysgsjl8n3w6cw7ki6a2a8"; - libraryHaskellDepends = [ base containers mtl text ]; - description = "Composable, hierarchical errors"; - license = lib.licenses.bsd3; - }) {}; - - "error-or_0_3_0" = callPackage - ({ mkDerivation, base, containers, mtl, text }: - mkDerivation { - pname = "error-or"; version = "0.3.0"; sha256 = "14493vzrwf4w0x1y6bml5z4k3m5y413hw650vfv3b63iynzz7l3x"; libraryHaskellDepends = [ base containers mtl text ]; description = "Composable, hierarchical errors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "error-or-utils" = callPackage @@ -92599,6 +92165,8 @@ self: { ]; description = "Espial is an open-source, web-based bookmarking server"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "esqueleto" = callPackage @@ -92699,7 +92267,9 @@ self: { ]; description = "General purpose live coding framework"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; + broken = true; }) {}; "essence-of-live-coding-PortMidi" = callPackage @@ -92716,6 +92286,7 @@ self: { description = "General purpose live coding framework - PortMidi backend"; license = lib.licenses.bsd3; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "essence-of-live-coding-gloss" = callPackage @@ -92731,6 +92302,7 @@ self: { ]; description = "General purpose live coding framework - Gloss backend"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -92752,7 +92324,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "essence-of-live-coding-gloss-example"; - broken = true; }) {}; "essence-of-live-coding-pulse" = callPackage @@ -92768,6 +92339,7 @@ self: { ]; description = "General purpose live coding framework - pulse backend"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -92789,7 +92361,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "essence-of-live-coding-pulse-example"; - broken = true; }) {}; "essence-of-live-coding-quickcheck" = callPackage @@ -92806,6 +92377,7 @@ self: { ]; description = "General purpose live coding framework - QuickCheck integration"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -92818,6 +92390,7 @@ self: { libraryHaskellDepends = [ base essence-of-live-coding vivid ]; description = "General purpose live coding framework - vivid backend"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "essence-of-live-coding-warp" = callPackage @@ -92836,6 +92409,8 @@ self: { ]; description = "General purpose live coding framework"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; }) {}; "estimator" = callPackage @@ -93196,6 +92771,7 @@ self: { ]; description = "Ethereum Recursive Length Prefix Encoding"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "ety" = callPackage @@ -93359,8 +92935,6 @@ self: { ]; description = "An extensible event framework"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eve-cli" = callPackage @@ -93379,6 +92953,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "eve-cli-exe"; + broken = true; }) {}; "eved" = callPackage @@ -93522,6 +93097,7 @@ self: { ]; description = "Core module for eventful"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "eventful-dynamodb" = callPackage @@ -93565,6 +93141,7 @@ self: { ]; description = "In-memory implementations for eventful"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "eventful-postgresql" = callPackage @@ -93607,7 +93184,6 @@ self: { description = "Common library for SQL event stores"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eventful-sqlite" = callPackage @@ -93646,20 +93222,20 @@ self: { ]; description = "Common module used for eventful tests"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "eventlog2html" = callPackage ({ mkDerivation, aeson, array, attoparsec, base, blaze-html , bytestring, containers, file-embed, filepath, ghc-events - , ghc-heap, hashable, hashtables, hvega, mtl, optparse-applicative - , semigroups, statistics-linreg, text, time, trie-simple, vector + , ghc-heap, githash, hashable, hashtables, hvega, mtl + , optparse-applicative, semigroups, statistics-linreg, text, time + , trie-simple, vector }: mkDerivation { pname = "eventlog2html"; - version = "0.9.2"; - sha256 = "0mr916gppp8pgyqdx89zhmcil7hkm7462h6vsq1y4n1qf5hx30jv"; - revision = "3"; - editedCabalFile = "12vbcl7l08a8a8xnjibpsb7va270l5m0avmwdw7ms4qnly7c5z29"; + version = "0.9.3"; + sha256 = "1wgpqrqkk0cvyxmmgkmq04k3d1v91qdqb737xx7k51d3lb909n7l"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -93668,7 +93244,7 @@ self: { mtl optparse-applicative semigroups statistics-linreg text time trie-simple vector ]; - executableHaskellDepends = [ aeson base filepath text ]; + executableHaskellDepends = [ aeson base filepath githash text ]; description = "Visualise an eventlog"; license = lib.licenses.bsd3; mainProgram = "eventlog2html"; @@ -93797,7 +93373,9 @@ self: { ]; description = "Server-Sent Events the UNIX way"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "eventsourced"; + broken = true; }) {}; "eventsourcing" = callPackage @@ -93888,8 +93466,6 @@ self: { ]; description = "An event-oriented observability library"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eventuo11y-batteries" = callPackage @@ -93911,7 +93487,6 @@ self: { ]; description = "Grab bag of eventuo11y-enriched functionality"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "eventuo11y-dsl" = callPackage @@ -93923,8 +93498,6 @@ self: { libraryHaskellDepends = [ base template-haskell th-compat ]; description = "DSL for defining eventuo11y fields and selectors"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eventuo11y-json" = callPackage @@ -93941,7 +93514,6 @@ self: { ]; description = "aeson-based rendering for eventuo11y"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "every" = callPackage @@ -94006,8 +93578,6 @@ self: { ]; description = "A GHC plugin to derive instances"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ewe" = callPackage @@ -94029,7 +93599,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "ewe"; - broken = true; }) {}; "ex-pool" = callPackage @@ -94158,23 +93727,11 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "exception-hierarchy"; - version = "0.1.0.6"; - sha256 = "0dnkfznv21sqb8law2smvrlyz76b49dccd83m6fici972f2v1v4k"; - libraryHaskellDepends = [ base template-haskell ]; - description = "Exception type hierarchy with TemplateHaskell"; - license = lib.licenses.bsd3; - }) {}; - - "exception-hierarchy_0_1_0_7" = callPackage - ({ mkDerivation, base, template-haskell }: - mkDerivation { - pname = "exception-hierarchy"; version = "0.1.0.7"; sha256 = "14kk0rync05rq2adx5lk59y56h97s0yv7mqfn2grhhwqb10maqj0"; libraryHaskellDepends = [ base template-haskell ]; description = "Exception type hierarchy with TemplateHaskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "exception-mailer" = callPackage @@ -94202,6 +93759,7 @@ self: { description = "Exception monad transformer instances for monads-fd classes"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "exception-monads-tf" = callPackage @@ -94260,6 +93818,8 @@ self: { libraryHaskellDepends = [ base template-haskell ]; description = "DerivingVia for your hierarchical exceptions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "exceptional" = callPackage @@ -94292,17 +93852,15 @@ self: { broken = true; }) {}; - "exceptions_0_10_5" = callPackage + "exceptions_0_10_7" = callPackage ({ mkDerivation, base, mtl, QuickCheck, stm, template-haskell , test-framework, test-framework-hunit, test-framework-quickcheck2 , transformers }: mkDerivation { pname = "exceptions"; - version = "0.10.5"; - sha256 = "12xz2x16pv1a6csz64bpl22v40vykjwvdaiz39i8f8nkwasc1qv6"; - revision = "1"; - editedCabalFile = "0ix0ihq1wm9k24r7pisdpvnh5fysy03d0rxfyc6qx9m2bflk9imj"; + version = "0.10.7"; + sha256 = "0jb0ah5k2mb4clhb34c59f615vzl54lhx3hf6njqsgdmr3jashls"; libraryHaskellDepends = [ base mtl stm template-haskell transformers ]; @@ -94315,6 +93873,25 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "exceptiot" = callPackage + ({ mkDerivation, base, exceptions, hspec, hspec-discover, mtl + , unliftio, unliftio-core + }: + mkDerivation { + pname = "exceptiot"; + version = "0.0.1.0"; + sha256 = "1ss78y1has7yy3ypm29s3k345h8nmxgaqw63r4ahbn0icmi52lys"; + libraryHaskellDepends = [ + base exceptions mtl unliftio unliftio-core + ]; + testHaskellDepends = [ + base exceptions hspec mtl unliftio unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "ExceptT, but uses IO instead of Either"; + license = lib.licenses.bsd3; + }) {}; + "exchangerates" = callPackage ({ mkDerivation, aeson, base, containers, directory, genvalidity , genvalidity-containers, genvalidity-hspec @@ -94534,8 +94111,8 @@ self: { }: mkDerivation { pname = "exiftool"; - version = "0.2.0.1"; - sha256 = "1s59pbwih18izh1iy9y0i56ysh2246dkdv98nan72zp2br5wz7g3"; + version = "0.2.0.2"; + sha256 = "0l9484l07v6hqv675nwwxnm9pck3cz6q3f684vcy7152gyp3z3sq"; libraryHaskellDepends = [ aeson base base64 bytestring hashable process scientific temporary text unordered-containers vector witch @@ -94829,7 +94406,6 @@ self: { description = "Customizable Quasiquote Interpolation"; license = "BSD-2-Clause-Patent"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "exotic-list-monads" = callPackage @@ -94883,6 +94459,8 @@ self: { libraryHaskellDepends = [ base ]; description = "floating point with extended exponent range"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "exp-pairs" = callPackage @@ -95179,16 +94757,14 @@ self: { }: mkDerivation { pname = "exploring-interpreters"; - version = "1.3.0.0"; - sha256 = "12a2z2z5c8kaqn7mks28ppazmkfvxn9lah6argmjqsd5ahwsxazs"; + version = "1.4.0.0"; + sha256 = "15dadwf6lpcppc1zcv5mwrfsgffjjwbsprasf0fw9prnyx1srw3v"; libraryHaskellDepends = [ aeson attoparsec base bytestring containers exceptions fgl haskeline http-types mtl network scientific text transformers ]; description = "A generic exploring interpreter for exploratory programming"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "exposed-containers" = callPackage @@ -95459,6 +95035,7 @@ self: { description = "Sums/products/lists/trees which can be extended in other modules"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "extensible-effects" = callPackage @@ -95622,6 +95199,7 @@ self: { description = "Sort large arrays on your hard drive. Kind of like the unix util sort."; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "extra" = callPackage @@ -96421,6 +95999,8 @@ self: { ]; description = "Solve classical planning problems (STRIPS/SAS+) using Haskell & Fast Downward"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fast-logger" = callPackage @@ -96529,6 +96109,8 @@ self: { libraryHaskellDepends = [ base bytestring tagsoup text ]; description = "Fast parser for tagsoup package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fasta" = callPackage @@ -96591,6 +96173,7 @@ self: { librarySystemDepends = [ fcgi ]; description = "A Haskell library for writing FastCGI programs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) fcgi;}; "fastedit" = callPackage @@ -96672,6 +96255,7 @@ self: { description = "A highly experimental Fastly API client"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fastmemo" = callPackage @@ -96710,7 +96294,6 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion ]; description = "A fast, but bare bones, bytestring parser combinators library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "fastpbkdf2" = callPackage @@ -96812,6 +96395,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "fay"; + broken = true; }) {}; "fay-base" = callPackage @@ -97040,24 +96624,23 @@ self: { ({ mkDerivation, aeson, async, base, bodhi, bugzilla-redhat , bytestring, config-ini, copr-api, directory, email-validate , extra, fedora-dists, filepath, http-conduit, http-directory - , http-query, koji, network-uri, optparse-applicative, pagure - , pretty-terminal, process, rpm-nvr, rpmbuild-order, simple-cmd - , simple-cmd-args, text, time, typed-process, unix - , unordered-containers, utf8-string, xdg-basedir + , http-query, koji, network-uri, pagure, pretty-terminal, process + , rpm-nvr, rpmbuild-order, simple-cmd, simple-cmd-args, text, time + , typed-process, unix, utf8-string, xdg-basedir }: mkDerivation { pname = "fbrnch"; - version = "1.1.2"; - sha256 = "1ybd98gbck5k433hzli7c5qcgxr5rbmy1ydi6hd7wrkhcrr6mndf"; + version = "1.2.1"; + sha256 = "1kf3sc5lcg9w62q18fzf3pgm0rhiyr290wad6l6932yjijxamaj2"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ aeson async base bodhi bugzilla-redhat bytestring config-ini copr-api directory email-validate extra fedora-dists filepath - http-conduit http-directory http-query koji network-uri - optparse-applicative pagure pretty-terminal process rpm-nvr - rpmbuild-order simple-cmd simple-cmd-args text time typed-process - unix unordered-containers utf8-string xdg-basedir + http-conduit http-directory http-query koji network-uri pagure + pretty-terminal process rpm-nvr rpmbuild-order simple-cmd + simple-cmd-args text time typed-process unix utf8-string + xdg-basedir ]; description = "Fedora packager tool to build package branches"; license = lib.licenses.gpl2Only; @@ -97179,6 +96762,8 @@ self: { ]; description = "Type-level version of algebraic-graphs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fcf-vinyl" = callPackage @@ -97219,7 +96804,6 @@ self: { description = "Server-Side Integration for FCKeditor"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "fclabels" = callPackage @@ -97333,6 +96917,8 @@ self: { libraryHaskellDepends = [ base containers microlens-platform mtl ]; testHaskellDepends = [ base containers microlens-platform mtl ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "feature-flags" = callPackage @@ -97421,21 +97007,6 @@ self: { }) {}; "fedora-dists" = callPackage - ({ mkDerivation, aeson, base, bytestring, cached-json-file, pdc - , text, time - }: - mkDerivation { - pname = "fedora-dists"; - version = "2.0.0"; - sha256 = "1igw3rl99g48c46qzclj15896c97qd8g02pdscjwm0zid83pbimk"; - libraryHaskellDepends = [ - aeson base bytestring cached-json-file pdc text time - ]; - description = "Library for Fedora distribution versions"; - license = lib.licenses.gpl3Only; - }) {}; - - "fedora-dists_2_1_1" = callPackage ({ mkDerivation, aeson, base, cached-json-file, pdc, text }: mkDerivation { pname = "fedora-dists"; @@ -97444,7 +97015,6 @@ self: { libraryHaskellDepends = [ aeson base cached-json-file pdc text ]; description = "Library for Fedora distribution versions"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "fedora-haskell-tools" = callPackage @@ -97714,23 +97284,24 @@ self: { }) {}; "feedback" = callPackage - ({ mkDerivation, autodocodec, autodocodec-yaml, base, conduit - , containers, envparse, fsnotify, optparse-applicative, path - , path-io, pretty-show, safe-coloured-text + ({ mkDerivation, autodocodec, autodocodec-yaml, base, bytestring + , conduit, containers, envparse, fsnotify, optparse-applicative + , path, path-io, pretty-show, safe-coloured-text , safe-coloured-text-layout, safe-coloured-text-terminfo, text - , time, typed-process, unliftio, yaml + , time, typed-process, unix, unliftio, yaml }: mkDerivation { pname = "feedback"; - version = "0.0.0.0"; - sha256 = "1y4p38cd0cqg4r43y2p0n2i99q83vnhm7gswx0j34p58isrbad4x"; + version = "0.1.0.1"; + sha256 = "18934n0fwz3q7mgfzc0phwxfng3qakf5hw14iyhal57ks7gm7j2y"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - autodocodec autodocodec-yaml base conduit containers envparse - fsnotify optparse-applicative path path-io pretty-show + autodocodec autodocodec-yaml base bytestring conduit containers + envparse fsnotify optparse-applicative path path-io pretty-show safe-coloured-text safe-coloured-text-layout - safe-coloured-text-terminfo text time typed-process unliftio yaml + safe-coloured-text-terminfo text time typed-process unix unliftio + yaml ]; executableHaskellDepends = [ base ]; description = "Declarative feedback loop manager"; @@ -97966,6 +97537,7 @@ self: { description = "A functional embedded language for DSP and parallelism"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "feldspar-signal" = callPackage @@ -98133,37 +97705,37 @@ self: { }) {}; "fficxx" = callPackage - ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal - , containers, data-default, directory, either, errors + ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring + , Cabal, containers, data-default, directory, dotgen, errors , fficxx-runtime, filepath, hashable, haskell-src-exts, lens, mtl , process, pureMD5, split, template, template-haskell, text , transformers, unordered-containers }: mkDerivation { pname = "fficxx"; - version = "0.6"; - sha256 = "0ky5zgdmw03wxngnpyai29ydm28n3bndznqxnmq45vadzhkz2ncz"; + version = "0.7.0.0"; + sha256 = "11ppih6vxvw9a5wmb7cni1jyprzbas1xy6i2zzqqxas3ik9i9sin"; libraryHaskellDepends = [ - aeson aeson-pretty base bytestring Cabal containers data-default - directory either errors fficxx-runtime filepath hashable - haskell-src-exts lens mtl process pureMD5 split template + aeson aeson-pretty array base bytestring Cabal containers + data-default directory dotgen errors fficxx-runtime filepath + hashable haskell-src-exts lens mtl process pureMD5 split template template-haskell text transformers unordered-containers ]; description = "Automatic C++ binding generation"; - license = lib.licenses.bsd3; + license = lib.licenses.bsd2; }) {}; "fficxx-runtime" = callPackage ({ mkDerivation, base, bytestring, hashable, template-haskell }: mkDerivation { pname = "fficxx-runtime"; - version = "0.6"; - sha256 = "12imwghgia5bp4j6gcbww6ikk43q4ysf6fymk54m645bl4agwqrb"; + version = "0.7.0.0"; + sha256 = "1igchjkbmdl3skqnf5aqa4zv1bz5kk1wvgrxwvhq2xdshyflvzkk"; libraryHaskellDepends = [ base bytestring hashable template-haskell ]; description = "Runtime for fficxx-generated library"; - license = lib.licenses.bsd3; + license = lib.licenses.bsd2; }) {}; "ffmpeg-light" = callPackage @@ -98426,6 +97998,7 @@ self: { description = "First-class record field combinators with infix record field syntax"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fields-json" = callPackage @@ -98559,10 +98132,8 @@ self: { ({ mkDerivation, base, bytestring, filepath, unix }: mkDerivation { pname = "file-io"; - version = "0.1.0.0"; - sha256 = "04h83zz3pgkd7q4p51rndc2wr3a2rk18y9mxahzsvd6hq8jp77gs"; - revision = "1"; - editedCabalFile = "0ahdk69vvydsjlmk9363jkcs9zy589m0sxpn1bqxysvm29lac9gs"; + version = "0.1.0.1"; + sha256 = "1kxr2cdv3zmml7v3gmk2zrd2kwvph46fzv3r2ia5brq5qvm2s544"; libraryHaskellDepends = [ base bytestring filepath unix ]; description = "Basic file IO operations via 'OsPath'"; license = lib.licenses.bsd3; @@ -98760,21 +98331,6 @@ self: { }: mkDerivation { pname = "filepath-bytestring"; - version = "1.4.2.1.9"; - sha256 = "1djbx4mxkzmbi6l44r4ag482r71hwd5s22fj2myz6c128lfrvlk7"; - libraryHaskellDepends = [ base bytestring unix ]; - testHaskellDepends = [ base bytestring filepath QuickCheck ]; - benchmarkHaskellDepends = [ base criterion filepath ]; - description = "Library for manipulating RawFilePaths in a cross platform way"; - license = lib.licenses.bsd3; - }) {}; - - "filepath-bytestring_1_4_2_1_12" = callPackage - ({ mkDerivation, base, bytestring, criterion, filepath, QuickCheck - , unix - }: - mkDerivation { - pname = "filepath-bytestring"; version = "1.4.2.1.12"; sha256 = "0i8j724fz8h1bcqvlvp3sxmgyrvx2sim74cvzkpc9m05yn9p27sq"; libraryHaskellDepends = [ base bytestring unix ]; @@ -98782,7 +98338,6 @@ self: { benchmarkHaskellDepends = [ base criterion filepath ]; description = "Library for manipulating RawFilePaths in a cross platform way"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "filepath-crypto" = callPackage @@ -99235,8 +98790,8 @@ self: { }: mkDerivation { pname = "finitary"; - version = "2.1.1.0"; - sha256 = "1ip1l809d7wnhiyz522g34kzsvv2r9hz1l065jqlrwf1pnhgsv0c"; + version = "2.1.1.1"; + sha256 = "006zyb0lna9w4n1yqm2c7k2lpk6aidj4cmf5kx8pcl4r9vkwafgk"; libraryHaskellDepends = [ base bitvec finite-typelits ghc-typelits-knownnat ghc-typelits-natnormalise primitive template-haskell @@ -99250,7 +98805,6 @@ self: { description = "A better, more type-safe Enum"; license = lib.licenses.gpl3Plus; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "finitary-derive" = callPackage @@ -99838,6 +99392,7 @@ self: { description = "Fixed Precision Arithmetic"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fixed-storable-array" = callPackage @@ -100326,35 +99881,6 @@ self: { "flat" = callPackage ({ mkDerivation, array, base, bytestring, containers, deepseq - , dlist, filepath, ghc-prim, hashable, mono-traversable, pretty - , primitive, QuickCheck, quickcheck-instances, quickcheck-text - , semigroups, tasty, tasty-hunit, tasty-quickcheck, text - , unordered-containers, vector - }: - mkDerivation { - pname = "flat"; - version = "0.4.4"; - sha256 = "02i4nzzkmm11sp312k2d3d3g0gm2gzhh3ibczxxscl986svam7p3"; - revision = "1"; - editedCabalFile = "1f9vlfnkr20nh5nayj18wvwh061w0byrd88j01k9gnrmb7qykpf6"; - libraryHaskellDepends = [ - array base bytestring containers deepseq dlist ghc-prim hashable - mono-traversable pretty primitive semigroups text - unordered-containers vector - ]; - testHaskellDepends = [ - array base bytestring containers deepseq dlist filepath ghc-prim - mono-traversable pretty QuickCheck quickcheck-instances - quickcheck-text tasty tasty-hunit tasty-quickcheck text - unordered-containers vector - ]; - description = "Principled and efficient bit-oriented binary serialization"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.sternenseemann ]; - }) {}; - - "flat_0_6" = callPackage - ({ mkDerivation, array, base, bytestring, containers, deepseq , dlist, filepath, ghc-prim, hashable, list-t, mono-traversable , pretty, primitive, QuickCheck, quickcheck-text, tasty , tasty-hunit, tasty-quickcheck, text, timeit, unordered-containers @@ -100377,7 +99903,6 @@ self: { ]; description = "Principled and efficient bit-oriented binary serialization"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -100767,11 +100292,11 @@ self: { pname = "float128"; version = "0.1"; sha256 = "0f4nrj5qy6j6d9ll22zjkbgvw2rx0x2w7nllhl929zdbmhxrjk73"; + revision = "1"; + editedCabalFile = "0s13mg9gagmvvqdisdm9r8nps6bavw4va18bsq93q080znwg2dw3"; libraryHaskellDepends = [ base integer-gmp ]; description = "FFI bindings for C _Float128"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "floating-bits" = callPackage @@ -100815,6 +100340,8 @@ self: { ]; description = "Wrapper for flock(2)"; license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "floskell" = callPackage @@ -100826,8 +100353,8 @@ self: { }: mkDerivation { pname = "floskell"; - version = "0.10.6"; - sha256 = "0r7djm85lc7qmcfc6fi8kdshg22zc6xhwqg09ipimdbwhlwlpv7f"; + version = "0.10.7"; + sha256 = "0v52x4h52ack88f98n9yrnybmlmp2fqpsvsn9lbjq2krl2p1n2az"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -100955,6 +100482,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "flowdock"; + broken = true; }) {}; "flowdock-rest" = callPackage @@ -101531,17 +101059,18 @@ self: { }) {}; "fold-debounce" = callPackage - ({ mkDerivation, base, data-default-class, hspec, stm, stm-delay - , time + ({ mkDerivation, base, data-default-class, hspec, hspec-discover + , stm, stm-delay, time }: mkDerivation { pname = "fold-debounce"; - version = "0.2.0.9"; - sha256 = "032vk4bpmsd7ix00kpfb2vnabivg9vkkfy3nbazdgm8x01jix4wq"; + version = "0.2.0.10"; + sha256 = "0ql0vi0l19l8559ppb9j0i5w90cgk2l7ipf8laj30xx6xz3yrrji"; libraryHaskellDepends = [ base data-default-class stm stm-delay time ]; testHaskellDepends = [ base hspec stm time ]; + testToolDepends = [ hspec-discover ]; description = "Fold multiple events that happen in a given period of time"; license = lib.licenses.bsd3; }) {}; @@ -101552,8 +101081,8 @@ self: { }: mkDerivation { pname = "fold-debounce-conduit"; - version = "0.2.0.6"; - sha256 = "0xy6vr2hbw41fcs3rlk7wyxqrkqd3nfw5rcr1aiij86zaaifpry5"; + version = "0.2.0.7"; + sha256 = "02a3kxk4b3725h4dbnfvc1va4h7l4mxg3aaf3jacq9vmn1zwl4n5"; libraryHaskellDepends = [ base conduit fold-debounce resourcet stm transformers transformers-base @@ -101597,10 +101126,8 @@ self: { }: mkDerivation { pname = "foldl"; - version = "1.4.12"; - sha256 = "0zf4yljh3s2ddxa7dhzdglmylj14kfldhkclc44g37zvjq6kcnag"; - revision = "5"; - editedCabalFile = "1b97k85zryid7x2ygi92ilv480ahfjn5yf1f4blllwyxn7zgvjv4"; + version = "1.4.13"; + sha256 = "14vlhgf40qmwkznwza37z4www3q1v5acsx4nw5vmg25wdnc8ibfw"; libraryHaskellDepends = [ base bytestring comonad containers contravariant hashable primitive profunctors random semigroupoids text transformers @@ -101974,8 +101501,8 @@ self: { pname = "force-layout"; version = "0.4.0.6"; sha256 = "17956k3mab2xhrmfy7fj5gh08h43yjlsryi5acjhnkmin5arhwpp"; - revision = "9"; - editedCabalFile = "0271sh8py8lm6amwxyr4dic20cji5hq1iixmikq0kmijg1095wkp"; + revision = "10"; + editedCabalFile = "1mcs51d1a3klzy938wq0gcbx7ln49g940zhajmflxq6imy5h5kwa"; libraryHaskellDepends = [ base containers data-default-class lens linear ]; @@ -102018,8 +101545,8 @@ self: { }: mkDerivation { pname = "foreign"; - version = "0.1.2.0"; - sha256 = "0pmwf96miai50q7vbwjdm5rz2cljpmp115hp3blv2l596mdjrvc0"; + version = "0.2.0.1"; + sha256 = "0jdp0firbgjsgfzwsxw2yr9lj08bibhngcfwamj0sh3asrb6ryws"; libraryHaskellDepends = [ base bytestring ghc-prim primitive primitive-unlifted ]; @@ -102205,6 +101732,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "formal"; + broken = true; }) {}; "format" = callPackage @@ -102307,6 +101835,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "formatting_7_2_0" = callPackage + ({ mkDerivation, base, clock, criterion, double-conversion, hspec + , old-locale, QuickCheck, scientific, text, time, transformers + }: + mkDerivation { + pname = "formatting"; + version = "7.2.0"; + sha256 = "0vbaf1p2grz8irh92d4v44f1np5kywjdjvrfygjyf57ng8bihyy0"; + libraryHaskellDepends = [ + base clock double-conversion old-locale scientific text time + transformers + ]; + testHaskellDepends = [ base hspec scientific text time ]; + benchmarkHaskellDepends = [ base criterion QuickCheck text ]; + description = "Combinator-based type-safe formatting (like printf() or FORMAT)"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "forml" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, cereal , containers, directory, file-embed, ghc-prim, GraphSCC, hslogger @@ -102331,6 +101878,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "forml"; + broken = true; }) {}; "formlets" = callPackage @@ -102449,38 +101997,6 @@ self: { "fortran-src" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, either, fgl, filepath, GenericPretty, happy - , hspec, hspec-discover, mtl, pretty, QuickCheck, temporary, text - , uniplate - }: - mkDerivation { - pname = "fortran-src"; - version = "0.9.0"; - sha256 = "0x2dkzqvc1al4zshdjc2iypi5bl2vkrvrvidmw7099jjspp6iw1c"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory either - fgl filepath GenericPretty mtl pretty temporary text uniplate - ]; - libraryToolDepends = [ alex happy ]; - executableHaskellDepends = [ - array base binary bytestring containers deepseq directory either - fgl filepath GenericPretty mtl pretty temporary text uniplate - ]; - testHaskellDepends = [ - array base binary bytestring containers deepseq directory either - fgl filepath GenericPretty hspec mtl pretty QuickCheck temporary - text uniplate - ]; - testToolDepends = [ hspec-discover ]; - description = "Parsers and analyses for Fortran standards 66, 77, 90, 95 and 2003 (partial)"; - license = lib.licenses.asl20; - mainProgram = "fortran-src"; - }) {}; - - "fortran-src_0_12_0" = callPackage - ({ mkDerivation, alex, array, base, binary, bytestring, containers - , deepseq, directory, either, fgl, filepath, GenericPretty, happy , hspec, hspec-discover, mtl, pretty, QuickCheck, singletons , singletons-base, singletons-th, temporary, text, uniplate , vector-sized @@ -102542,7 +102058,6 @@ self: { license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; mainProgram = "fortran-src-extras"; - broken = true; }) {}; "fortran-vars" = callPackage @@ -102751,32 +102266,34 @@ self: { }) {}; "fourmolu" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, Cabal - , containers, Diff, directory, dlist, exceptions, filepath - , ghc-lib-parser, gitrev, hspec, hspec-discover, HsYAML - , HsYAML-aeson, mtl, optparse-applicative, path, path-io, syb - , temporary, text + ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring + , Cabal, containers, Diff, directory, dlist, exceptions, filepath + , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec + , megaparsec, MemoTrie, mtl, optparse-applicative, path, path-io + , pretty, process, QuickCheck, syb, template-haskell, temporary + , text, th-lift-instances, yaml }: mkDerivation { pname = "fourmolu"; - version = "0.4.0.0"; - sha256 = "1mq0h6nsl7ssfwh6zqhyja7w212vn8msmlm5iwwimca279hzwywb"; + version = "0.9.0.0"; + sha256 = "0zq9fv5yszm7icirgwj8g4lhg21lg87fhz56sssjnfikzmkwyh1l"; revision = "1"; - editedCabalFile = "03bwhqj547brmgk191gy3k9xayi6fqqk2f5sbz3ail1bk7b73xnq"; + editedCabalFile = "0hbjn9qzbr7a9571isi4i651gdi60qqa40idpfg87qlg2sd61485"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal base bytestring Cabal containers Diff directory - dlist exceptions filepath ghc-lib-parser HsYAML HsYAML-aeson mtl - syb text + aeson ansi-terminal array base bytestring Cabal containers Diff + directory dlist exceptions filepath ghc-lib-parser megaparsec + MemoTrie mtl syb template-haskell text th-lift-instances yaml ]; executableHaskellDepends = [ - base directory filepath ghc-lib-parser gitrev optparse-applicative - text + base containers directory filepath ghc-lib-parser gitrev + optparse-applicative text yaml ]; testHaskellDepends = [ - base containers directory filepath hspec path path-io temporary - text + base containers Diff directory filepath ghc-lib-parser hspec + hspec-megaparsec megaparsec path path-io pretty process QuickCheck + temporary text ]; testToolDepends = [ hspec-discover ]; description = "A formatter for Haskell source code"; @@ -102784,23 +102301,23 @@ self: { mainProgram = "fourmolu"; }) {}; - "fourmolu_0_9_0_0" = callPackage + "fourmolu_0_10_1_0" = callPackage ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring - , Cabal, containers, Diff, directory, dlist, exceptions, filepath - , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec - , megaparsec, MemoTrie, mtl, optparse-applicative, path, path-io - , pretty, process, QuickCheck, syb, template-haskell, temporary - , text, th-lift-instances, yaml + , Cabal-syntax, containers, Diff, directory, dlist, exceptions + , filepath, ghc-lib-parser, gitrev, hspec, hspec-discover + , hspec-megaparsec, megaparsec, MemoTrie, mtl, optparse-applicative + , path, path-io, pretty, process, QuickCheck, syb, template-haskell + , temporary, text, th-lift-instances, yaml }: mkDerivation { pname = "fourmolu"; - version = "0.9.0.0"; - sha256 = "0zq9fv5yszm7icirgwj8g4lhg21lg87fhz56sssjnfikzmkwyh1l"; + version = "0.10.1.0"; + sha256 = "0gkzd2wf8hji5j0pxjv7l43m405zwsvppj7hax69j86346mb8hp4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal array base bytestring Cabal containers Diff - directory dlist exceptions filepath ghc-lib-parser megaparsec + aeson ansi-terminal array base bytestring Cabal-syntax containers + Diff directory dlist exceptions filepath ghc-lib-parser megaparsec MemoTrie mtl syb template-haskell text th-lift-instances yaml ]; executableHaskellDepends = [ @@ -102890,6 +102407,8 @@ self: { ]; description = "Format-preserving encryption"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fpipe" = callPackage @@ -103180,41 +102699,86 @@ self: { }) {}; "freckle-app" = callPackage - ({ mkDerivation, aeson, aws-xray-client-persistent - , aws-xray-client-wai, base, Blammo, bugsnag, bytestring - , case-insensitive, conduit, containers, datadog, doctest, dotenv - , ekg-core, envparse, errors, exceptions, extra, filepath, Glob + ({ mkDerivation, aeson, base, Blammo, bugsnag, bytestring + , case-insensitive, conduit, containers, datadog, directory, dlist + , doctest, ekg-core, envparse, errors, exceptions, filepath, Glob , hashable, hspec, hspec-core, hspec-expectations-lifted , hspec-junit-formatter, http-client, http-conduit , http-link-header, http-types, immortal, lens, lens-aeson - , memcache, monad-control, MonadRandom, mtl, network-uri - , path-pieces, persistent, persistent-postgresql, postgresql-simple - , primitive, QuickCheck, resource-pool, retry, safe, scientist - , semigroupoids, template-haskell, text, time, transformers - , transformers-base, typed-process, unliftio, unliftio-core - , unordered-containers, vector, wai, wai-extra, yaml, yesod-core + , load-env, memcache, monad-control, monad-logger, MonadRandom, mtl + , network-uri, persistent, persistent-postgresql, postgresql-simple + , primitive, process, resource-pool, retry, safe, scientist + , semigroupoids, template-haskell, temporary, text, time + , transformers, transformers-base, typed-process, unliftio + , unliftio-core, unordered-containers, vector, wai, wai-extra, yaml + , yesod-core }: mkDerivation { pname = "freckle-app"; - version = "1.7.0.0"; - sha256 = "1dndz28fnlwkyskxh2b3afi2imf0ax5sxvqgbd6jl4f06lmk7i5p"; + version = "1.3.0.0"; + sha256 = "1h2ckdjq4h7qv7r5dm28gbs5ja125wi2inzjg3436css9qn1s7v9"; + libraryHaskellDepends = [ + aeson base Blammo bugsnag bytestring case-insensitive conduit + containers datadog dlist doctest ekg-core envparse errors + exceptions filepath Glob hashable hspec hspec-core + hspec-expectations-lifted hspec-junit-formatter http-client + http-conduit http-link-header http-types immortal lens load-env + memcache monad-control monad-logger MonadRandom mtl network-uri + persistent persistent-postgresql postgresql-simple primitive + resource-pool retry safe scientist semigroupoids template-haskell + text time transformers transformers-base typed-process unliftio + unliftio-core unordered-containers vector wai wai-extra yaml + yesod-core + ]; + testHaskellDepends = [ + aeson base bytestring directory errors hspec http-types lens + lens-aeson memcache mtl postgresql-simple process temporary text + time wai wai-extra + ]; + description = "Haskell application toolkit used at Freckle"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "freckle-app_1_8_1_0" = callPackage + ({ mkDerivation, aeson, aws-xray-client-persistent + , aws-xray-client-wai, base, Blammo, bugsnag, bytestring + , case-insensitive, cassava, conduit, conduit-extra, containers + , datadog, doctest, dotenv, ekg-core, envparse, errors, exceptions + , extra, filepath, Glob, hashable, hspec, hspec-core + , hspec-expectations-lifted, hspec-junit-formatter, http-client + , http-conduit, http-link-header, http-types, immortal, lens + , lens-aeson, memcache, monad-control, monad-validate, MonadRandom + , mtl, network-uri, nonempty-containers, path-pieces, persistent + , persistent-postgresql, postgresql-simple, primitive, QuickCheck + , resource-pool, retry, safe, scientist, semigroupoids + , template-haskell, text, time, transformers, transformers-base + , typed-process, unliftio, unliftio-core, unordered-containers + , vector, wai, wai-extra, yaml, yesod-core + }: + mkDerivation { + pname = "freckle-app"; + version = "1.8.1.0"; + sha256 = "14v8km2dd74alanz877yly1p6dnai941g793jxgdgfs9hhhflw2m"; libraryHaskellDepends = [ aeson aws-xray-client-persistent aws-xray-client-wai base Blammo - bugsnag bytestring case-insensitive conduit containers datadog - doctest dotenv ekg-core envparse errors exceptions extra filepath - Glob hashable hspec hspec-core hspec-expectations-lifted - hspec-junit-formatter http-client http-conduit http-link-header - http-types immortal lens memcache monad-control MonadRandom mtl - network-uri path-pieces persistent persistent-postgresql + bugsnag bytestring case-insensitive cassava conduit conduit-extra + containers datadog doctest dotenv ekg-core envparse errors + exceptions extra filepath Glob hashable hspec hspec-core + hspec-expectations-lifted hspec-junit-formatter http-client + http-conduit http-link-header http-types immortal lens memcache + monad-control monad-validate MonadRandom mtl network-uri + nonempty-containers path-pieces persistent persistent-postgresql postgresql-simple primitive resource-pool retry safe scientist semigroupoids template-haskell text time transformers transformers-base typed-process unliftio unliftio-core unordered-containers vector wai wai-extra yaml yesod-core ]; testHaskellDepends = [ - aeson base Blammo bugsnag bytestring errors hspec http-types lens - lens-aeson memcache postgresql-simple QuickCheck unliftio wai - wai-extra + aeson base Blammo bugsnag bytestring cassava conduit errors hspec + http-types lens lens-aeson memcache monad-validate + nonempty-containers postgresql-simple QuickCheck unliftio vector + wai wai-extra ]; description = "Haskell application toolkit used at Freckle"; license = lib.licenses.mit; @@ -103249,10 +102813,8 @@ self: { }: mkDerivation { pname = "free"; - version = "5.1.9"; - sha256 = "1vlzis9sqxh7xrmh3habbgiw3skkhkn710bhqb6fnl45804i6x9f"; - revision = "1"; - editedCabalFile = "133nycxnzy7sgp2vib8hpp2jgzm8pxp31ljf7b4v91jn1gqg3kpl"; + version = "5.1.10"; + sha256 = "0whff0r0nvii5l9z9crw7v0rj0wwblwbnfp99515siyxjkzs9phj"; libraryHaskellDepends = [ base comonad containers distributive exceptions indexed-traversable mtl profunctors semigroupoids template-haskell th-abstraction @@ -103353,6 +102915,7 @@ self: { ]; description = "Free functors, adjoint to functors that forget class constraints"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "free-game" = callPackage @@ -103869,6 +103432,7 @@ self: { description = "Single line text rendering for OpenGL ES"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "freetype2" = callPackage @@ -103963,6 +103527,8 @@ self: { ]; description = "high-powered optics in a small package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fresnel-fused-effects" = callPackage @@ -103974,6 +103540,7 @@ self: { libraryHaskellDepends = [ base fresnel fused-effects ]; description = "fresnel/fused-effects integration"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "friday" = callPackage @@ -104707,10 +104274,8 @@ self: { }: mkDerivation { pname = "full-text-search"; - version = "0.2.1.4"; - sha256 = "1qbfklpyxdf5d4d5s1ka9s5a43y892387b0lyjsx9fq3g6d2vck7"; - revision = "1"; - editedCabalFile = "0dma678xflfplrld48aca1p9kjnnwlsqdrqmkgwh9dp54wrxzxl1"; + version = "0.2.2.0"; + sha256 = "12lwjmp31wp3yhbcrpndc89xcs65xyz910d0gzax0n403r24brhx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base containers text vector ]; @@ -105249,6 +104814,7 @@ self: { ]; description = "GLL parser with simple combinator interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "funion" = callPackage @@ -105479,7 +105045,6 @@ self: { description = "A fused-effects adapter for squeal-postgresql"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "fused-effects-th" = callPackage @@ -105559,8 +105124,8 @@ self: { }: mkDerivation { pname = "futhark"; - version = "0.22.3"; - sha256 = "1si1hlax2vzaqcdprvgg8bcmk1xkwny5rb30fc3n8h0i0fpdmbic"; + version = "0.22.6"; + sha256 = "1zza3jqxi9x29qcjq90b5p4zxizh2bgm5k36d7f1gbmn5fl6smz0"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -105975,6 +105540,7 @@ self: { description = "Interface to the FXPak/FXPak Pro USB interface"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "g-npm" = callPackage @@ -106970,9 +106536,7 @@ self: { ]; description = "Generate CSV Exports of Your Gemini Trades, Transfers, & Earn Transactions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "gemini-exports"; - broken = true; }) {}; "gemini-router" = callPackage @@ -106990,6 +106554,7 @@ self: { ]; description = "A simple Happstack-style Gemini router"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "gemini-server" = callPackage @@ -107006,6 +106571,8 @@ self: { ]; description = "A lightweight server for the Gemini protocol"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "gemini-textboard" = callPackage @@ -107156,6 +106723,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "general-allocate" = callPackage + ({ mkDerivation, base, containers, mtl, primitive, resourcet + , safe-exceptions, transformers + }: + mkDerivation { + pname = "general-allocate"; + version = "0.1.0.0"; + sha256 = "1w9dv6fphf64sh1c8azk7r6yb19mw4g1rbw4zy0rz69fskgia5sv"; + libraryHaskellDepends = [ + base containers mtl primitive resourcet safe-exceptions + transformers + ]; + description = "Exception-safe resource management in more monads"; + license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "general-games" = callPackage ({ mkDerivation, base, hspec, HUnit, monad-loops, MonadRandom , random, random-shuffle @@ -107232,7 +106817,6 @@ self: { description = "stringly-named getters for generic data"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "generic-aeson" = callPackage @@ -107252,17 +106836,6 @@ self: { }) {}; "generic-arbitrary" = callPackage - ({ mkDerivation, base, QuickCheck }: - mkDerivation { - pname = "generic-arbitrary"; - version = "0.2.2"; - sha256 = "12yj55lrddyxr3wfcki0pvcfa181p3q65chziw8qrmszn219yjsx"; - libraryHaskellDepends = [ base QuickCheck ]; - description = "Generic implementation for QuickCheck's Arbitrary"; - license = lib.licenses.mit; - }) {}; - - "generic-arbitrary_1_0_1" = callPackage ({ mkDerivation, base, deepseq, QuickCheck, tasty, tasty-discover , tasty-hunit, tasty-quickcheck }: @@ -107278,7 +106851,6 @@ self: { testToolDepends = [ tasty-discover ]; description = "Generic implementation for QuickCheck's Arbitrary"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "generic-binary" = callPackage @@ -107325,31 +106897,6 @@ self: { "generic-data" = callPackage ({ mkDerivation, ap-normalize, base, base-orphans, contravariant - , criterion, deepseq, generic-lens, ghc-boot-th, inspection-testing - , one-liner, show-combinators, tasty, tasty-hunit, template-haskell - , unordered-containers - }: - mkDerivation { - pname = "generic-data"; - version = "0.9.2.1"; - sha256 = "0hs5ahl1nx61kw5j0pnwgjrph7jgqq0djma956ksz6aivzldjf7q"; - revision = "1"; - editedCabalFile = "01ly8r9s34pj8i7ppjclclx3fmnv24lhic1n7cjz5cdk3cxa8klc"; - libraryHaskellDepends = [ - ap-normalize base base-orphans contravariant ghc-boot-th - show-combinators - ]; - testHaskellDepends = [ - base generic-lens inspection-testing one-liner show-combinators - tasty tasty-hunit template-haskell unordered-containers - ]; - benchmarkHaskellDepends = [ base criterion deepseq ]; - description = "Deriving instances with GHC.Generics and related utilities"; - license = lib.licenses.mit; - }) {}; - - "generic-data_1_0_0_0" = callPackage - ({ mkDerivation, ap-normalize, base, base-orphans, contravariant , criterion, deepseq, generic-lens, ghc-boot-th, one-liner , show-combinators, tasty, tasty-hunit }: @@ -107367,7 +106914,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ]; description = "Deriving instances with GHC.Generics and related utilities"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "generic-data-surgery" = callPackage @@ -107458,27 +107004,12 @@ self: { ({ mkDerivation, ap-normalize, base, transformers }: mkDerivation { pname = "generic-functor"; - version = "0.2.0.0"; - sha256 = "0zrjsn78ip9kigqgw5cxzm9d7pqf1svdzrc3rm041889ca0szwjv"; - revision = "3"; - editedCabalFile = "1b14y3qhwzp2gkby5zflwad1v8v26wnclb7wnjagy67pvhnnn93d"; - libraryHaskellDepends = [ ap-normalize base ]; - testHaskellDepends = [ base transformers ]; - description = "Deriving generalized functors with GHC.Generics"; - license = lib.licenses.mit; - }) {}; - - "generic-functor_1_1_0_0" = callPackage - ({ mkDerivation, ap-normalize, base, transformers }: - mkDerivation { - pname = "generic-functor"; version = "1.1.0.0"; sha256 = "1hh5p7bk4pkq7095wiwiw5v53abh6csc4g0q47f3kgpavkf83d8c"; libraryHaskellDepends = [ ap-normalize base ]; testHaskellDepends = [ base transformers ]; description = "Deriving generalized functors with GHC.Generics"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "generic-labels" = callPackage @@ -107592,6 +107123,8 @@ self: { libraryHaskellDepends = [ base generics-sop ]; description = "First class pattern matching"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "generic-maybe" = callPackage @@ -107734,6 +107267,8 @@ self: { ]; description = "GenericPretty canonical instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "generic-random" = callPackage @@ -107757,6 +107292,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Magic record operations using generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "generic-server" = callPackage @@ -107811,9 +107348,7 @@ self: { executableHaskellDepends = [ base ]; description = "A map, where the keys may be complex structured data"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "bogus"; - broken = true; }) {}; "generic-xml" = callPackage @@ -108128,6 +107663,8 @@ self: { libraryHaskellDepends = [ base mtl template-haskell ]; description = "Use Template Haskell to generate Uniplate-like functions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "geniserver" = callPackage @@ -108186,27 +107723,12 @@ self: { }: mkDerivation { pname = "genvalidity"; - version = "1.0.0.1"; - sha256 = "1rkrw46mhb4cvvg69avmbvsmssg5aii9g2kb4xqa9488jf8wz3m0"; - libraryHaskellDepends = [ base QuickCheck random validity ]; - testHaskellDepends = [ base hspec hspec-core QuickCheck ]; - description = "Testing utilities for the validity library"; - license = lib.licenses.mit; - }) {}; - - "genvalidity_1_1_0_0" = callPackage - ({ mkDerivation, base, hspec, hspec-core, QuickCheck, random - , validity - }: - mkDerivation { - pname = "genvalidity"; version = "1.1.0.0"; sha256 = "08xvbgzhi9f2s3g81zzd8yhrn66mr84m0dvp478nrbck19jdg5sq"; libraryHaskellDepends = [ base QuickCheck random validity ]; testHaskellDepends = [ base hspec hspec-core QuickCheck ]; description = "Testing utilities for the validity library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-aeson" = callPackage @@ -108270,31 +107792,6 @@ self: { }: mkDerivation { pname = "genvalidity-bytestring"; - version = "1.0.0.0"; - sha256 = "0bsi0y05pivyx14cvl7w46fgp1y5b53w2bk07q3vgzk079vfrcrg"; - libraryHaskellDepends = [ - base bytestring genvalidity QuickCheck random validity - validity-bytestring - ]; - testHaskellDepends = [ - base bytestring deepseq genvalidity genvalidity-hspec hspec - QuickCheck validity - ]; - benchmarkHaskellDepends = [ - base bytestring criterion genvalidity genvalidity-criterion - QuickCheck - ]; - description = "GenValidity support for ByteString"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-bytestring_1_0_0_1" = callPackage - ({ mkDerivation, base, bytestring, criterion, deepseq, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck - , random, validity, validity-bytestring - }: - mkDerivation { - pname = "genvalidity-bytestring"; version = "1.0.0.1"; sha256 = "1fvd5h47qlzwggz5brszld7pf8rpwmiqr1h9n22rfm6dmczzh49k"; libraryHaskellDepends = [ @@ -108311,7 +107808,6 @@ self: { ]; description = "GenValidity support for ByteString"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-case-insensitive" = callPackage @@ -108344,30 +107840,6 @@ self: { }: mkDerivation { pname = "genvalidity-containers"; - version = "1.0.0.0"; - sha256 = "146nnn1k82js6vkgx3ys5nl251jbryqg1lvb56fd3849az68px3k"; - libraryHaskellDepends = [ - base containers genvalidity QuickCheck validity validity-containers - ]; - testHaskellDepends = [ - base containers genvalidity genvalidity-hspec genvalidity-property - hspec QuickCheck validity validity-containers - ]; - benchmarkHaskellDepends = [ - base containers criterion genvalidity genvalidity-criterion - QuickCheck - ]; - description = "GenValidity support for containers"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-containers_1_0_0_1" = callPackage - ({ mkDerivation, base, containers, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, genvalidity-property - , hspec, QuickCheck, validity, validity-containers - }: - mkDerivation { - pname = "genvalidity-containers"; version = "1.0.0.1"; sha256 = "155ri2ncwcjx2gl3mimfkafqdf33mzkk1188dk97wbzg0rpq69ip"; libraryHaskellDepends = [ @@ -108383,28 +107855,10 @@ self: { ]; description = "GenValidity support for containers"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-criterion" = callPackage ({ mkDerivation, base, criterion, deepseq, genvalidity, QuickCheck - }: - mkDerivation { - pname = "genvalidity-criterion"; - version = "1.0.0.0"; - sha256 = "050i515v8wggamlnywmx93nlb8gqhnlf5qafsrn0gl5w8d82blc9"; - libraryHaskellDepends = [ - base criterion deepseq genvalidity QuickCheck - ]; - benchmarkHaskellDepends = [ - base criterion genvalidity QuickCheck - ]; - description = "Criterion benchmarks for generators"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-criterion_1_1_0_0" = callPackage - ({ mkDerivation, base, criterion, deepseq, genvalidity, QuickCheck , vector }: mkDerivation { @@ -108419,7 +107873,6 @@ self: { ]; description = "Criterion benchmarks for generators"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-hspec" = callPackage @@ -108648,26 +108101,6 @@ self: { }: mkDerivation { pname = "genvalidity-path"; - version = "1.0.0.0"; - sha256 = "172gss10xl274s95l3ywgra32ldnl2a4gicc1xgi5q7v5zmj5gaa"; - libraryHaskellDepends = [ - base genvalidity path QuickCheck validity-path - ]; - testHaskellDepends = [ base genvalidity-hspec hspec path ]; - benchmarkHaskellDepends = [ - base criterion genvalidity genvalidity-criterion path QuickCheck - ]; - description = "GenValidity support for Path"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-path_1_0_0_1" = callPackage - ({ mkDerivation, base, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, path, QuickCheck - , validity-path - }: - mkDerivation { - pname = "genvalidity-path"; version = "1.0.0.1"; sha256 = "1rafj9sj8xv0b404wb7gjm1qnkvq2f8b9fk40pq5r2jp1wd0id1z"; libraryHaskellDepends = [ @@ -108679,7 +108112,6 @@ self: { ]; description = "GenValidity support for Path"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-persistent" = callPackage @@ -108878,26 +108310,6 @@ self: { }: mkDerivation { pname = "genvalidity-time"; - version = "1.0.0.0"; - sha256 = "15xj7x915524h0hi9b6c7y6imwkv3g7b10cr7wx8yaysh5d1cx7r"; - libraryHaskellDepends = [ - base genvalidity QuickCheck time validity-time - ]; - testHaskellDepends = [ base genvalidity-hspec hspec time ]; - benchmarkHaskellDepends = [ - base criterion genvalidity-criterion time - ]; - description = "GenValidity support for time"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-time_1_0_0_1" = callPackage - ({ mkDerivation, base, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck, time - , validity-time - }: - mkDerivation { - pname = "genvalidity-time"; version = "1.0.0.1"; sha256 = "153c6kcrfr7lkps7sqix7478wz837v15nfznfjsycl17m9vmlz46"; libraryHaskellDepends = [ @@ -108909,7 +108321,6 @@ self: { ]; description = "GenValidity support for time"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-typed-uuid" = callPackage @@ -108964,28 +108375,6 @@ self: { }: mkDerivation { pname = "genvalidity-uuid"; - version = "1.0.0.0"; - sha256 = "1w53ziz3zbm4dv64gr60md5riis28bi3lrznzsrjyvd6nngxx460"; - libraryHaskellDepends = [ - base genvalidity QuickCheck uuid validity validity-uuid - ]; - testHaskellDepends = [ - base genvalidity genvalidity-hspec hspec QuickCheck uuid - ]; - benchmarkHaskellDepends = [ - base criterion genvalidity genvalidity-criterion QuickCheck uuid - ]; - description = "GenValidity support for UUID"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-uuid_1_0_0_1" = callPackage - ({ mkDerivation, base, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck, uuid - , validity, validity-uuid - }: - mkDerivation { - pname = "genvalidity-uuid"; version = "1.0.0.1"; sha256 = "15nnfpqdbvr4jhrykgj3djp4sc0n08wlwnvfbv73k30z49cqnd5k"; libraryHaskellDepends = [ @@ -108999,7 +108388,6 @@ self: { ]; description = "GenValidity support for UUID"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-vector" = callPackage @@ -109058,6 +108446,7 @@ self: { ]; description = "High precision conversion between GPS and UK Grid"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "geocalc" = callPackage @@ -109237,8 +108626,8 @@ self: { }: mkDerivation { pname = "geomancy"; - version = "0.2.4.0"; - sha256 = "1wc9fza03afha1ni7jh9gpm39k20d6n5kmjgkpd06aqpf6yaqfcl"; + version = "0.2.4.1"; + sha256 = "0rnp4ma5gxxd2lf9n36ifbw2jr0nl6jfxqzvvp86mlvs3a7jpsxd"; libraryHaskellDepends = [ base containers deepseq mono-traversable simple-affine-space ]; @@ -109408,7 +108797,6 @@ self: { license = "unknown"; hydraPlatforms = lib.platforms.none; mainProgram = "gf"; - broken = true; }) {}; "ggtsTC" = callPackage @@ -109504,6 +108892,7 @@ self: { description = "GHC-API compatibility helpers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-api-compat_8_10_7" = callPackage @@ -109517,6 +108906,7 @@ self: { description = "GHC-API compatibility helpers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-api-compat" = callPackage @@ -109528,6 +108918,8 @@ self: { libraryHaskellDepends = [ base containers ghc ]; description = "GHC-API compatibility helpers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-bignum_1_3" = callPackage @@ -109610,15 +109002,15 @@ self: { "ghc-check" = callPackage ({ mkDerivation, base, containers, directory, filepath, ghc - , ghc-paths, process, safe-exceptions, template-haskell, th-compat - , transformers + , ghc-boot, ghc-paths, process, safe-exceptions, template-haskell + , th-compat, transformers }: mkDerivation { pname = "ghc-check"; version = "0.5.0.8"; sha256 = "1m3w1l8gkc7g9p7d07h3f71687rgs9lb5ildgfr1ihxp7wssh98h"; libraryHaskellDepends = [ - base containers directory filepath ghc ghc-paths process + base containers directory filepath ghc ghc-boot ghc-paths process safe-exceptions template-haskell th-compat transformers ]; description = "detect mismatches between compile-time and run-time versions of the ghc api"; @@ -109741,8 +109133,8 @@ self: { }: mkDerivation { pname = "ghc-debug-brick"; - version = "0.3.0.0"; - sha256 = "1ss8gi5x26p7lpcrdq961abz5q0lmnhyyv6x0l1dqsnqxfy71iv4"; + version = "0.4.0.0"; + sha256 = "1xdk23pzfa7q74rrxw26n47ki7iawysnf9liq6r9m92vll7nmq6y"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -109765,8 +109157,8 @@ self: { }: mkDerivation { pname = "ghc-debug-client"; - version = "0.3.0.0"; - sha256 = "0lr9yjgipfaqg22imxrka3srjm6bcb1illxg018pgl6l7hbpp4k7"; + version = "0.4.0.0"; + sha256 = "0r007lp3vpphcfzlv8p6k2w8r4f65if0kdh990d3pfj4m84xg81i"; libraryHaskellDepends = [ async base binary bitwise bytestring containers contra-tracer directory dom-lt eventlog2html filepath ghc-debug-common @@ -109777,6 +109169,7 @@ self: { description = "Useful functions for writing heap analysis tools which use ghc-debug"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-debug-common" = callPackage @@ -109786,8 +109179,8 @@ self: { }: mkDerivation { pname = "ghc-debug-common"; - version = "0.3.0.0"; - sha256 = "1nb1m8lks5d0svzdl2y1pww0afdc4ywc30myih170w3mf0cs2rld"; + version = "0.4.0.0"; + sha256 = "1h3a1j97xnfpki25nsc80kql751xz59i3cvcf12qh97ii2vziwk5"; libraryHaskellDepends = [ array base binary bytestring containers cpu deepseq directory dom-lt filepath ghc-debug-convention ghc-heap hashable transformers @@ -109795,20 +109188,17 @@ self: { ]; description = "Connect to a socket created by ghc-debug-stub and analyse the heap of the debuggee program"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-debug-convention" = callPackage ({ mkDerivation, base, directory, filepath }: mkDerivation { pname = "ghc-debug-convention"; - version = "0.3.0.0"; - sha256 = "0y7z7xqx5vn6bvx90rvhhajk0jxmp1i1qyhmq7hwhvlyb4p87282"; + version = "0.4.0.0"; + sha256 = "0mmghsf4g4hwls1cldmqzjq9sfnwwp0d94ahxryxd0dla7x423s6"; libraryHaskellDepends = [ base directory filepath ]; description = "Definitions needed by ghc-debug-stub and ghc-debug-common"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ghc-debug-stub" = callPackage @@ -109817,14 +109207,13 @@ self: { }: mkDerivation { pname = "ghc-debug-stub"; - version = "0.3.0.0"; - sha256 = "0m7zngjlcijddz5xrns8531aim3am8y1rki4qj04gvbh7pdq5q3c"; + version = "0.4.0.0"; + sha256 = "0qnshkk3cw26l6x8c415l4s99qkpq5hgl1p7n85w8kbi1xzlgm0w"; libraryHaskellDepends = [ base directory filepath ghc-debug-convention ghc-prim ]; description = "Functions for instrumenting your application so the heap can be analysed with ghc-debug-common"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-definitions-th" = callPackage @@ -109924,28 +109313,28 @@ self: { }: mkDerivation { pname = "ghc-events"; - version = "0.17.0.3"; - sha256 = "0m50x2ycv43d7yzwksbs1zc11wlyiszjz662fj47v9r7hacx335v"; + version = "0.18.0"; + sha256 = "0kwml9dgbj0px4bc3d9kqmw2ijc3y7irs4n02nzm7ilgcvy7hv6h"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base binary bytestring containers text vector ]; - executableHaskellDepends = [ base containers ]; + executableHaskellDepends = [ base bytestring containers ]; testHaskellDepends = [ base ]; description = "Library and tool for parsing .eventlog files from GHC"; license = lib.licenses.bsd3; mainProgram = "ghc-events"; }) {}; - "ghc-events_0_18_0" = callPackage + "ghc-events_0_19_0" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers, text , vector }: mkDerivation { pname = "ghc-events"; - version = "0.18.0"; - sha256 = "0kwml9dgbj0px4bc3d9kqmw2ijc3y7irs4n02nzm7ilgcvy7hv6h"; + version = "0.19.0"; + sha256 = "034wy6rb51xi0avkcn1gy4sj6yf479hwd8y0zxrhqp4y7wb7bjx5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -110011,7 +109400,7 @@ self: { broken = true; }) {}; - "ghc-exactprint" = callPackage + "ghc-exactprint_0_6_4" = callPackage ({ mkDerivation, base, bytestring, containers, Diff, directory , filemanip, filepath, free, ghc, ghc-boot, ghc-paths, HUnit, mtl , silently, syb @@ -110034,10 +109423,14 @@ self: { ]; description = "ExactPrint for GHC"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; - "ghc-exactprint_1_5_0" = callPackage - ({ mkDerivation }: + "ghc-exactprint" = callPackage + ({ mkDerivation, base, bytestring, containers, data-default, Diff + , directory, fail, filemanip, filepath, free, ghc, ghc-boot + , ghc-paths, HUnit, mtl, ordered-containers, silently, syb + }: mkDerivation { pname = "ghc-exactprint"; version = "1.5.0"; @@ -110046,9 +109439,17 @@ self: { editedCabalFile = "1v6my8bnhjhw7k3v2q9iwjpz9lj5g6ilvlzdq6svcabxahmzbr2c"; isLibrary = true; isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers data-default directory fail filepath + free ghc ghc-boot ghc-paths mtl ordered-containers syb + ]; + testHaskellDepends = [ + base bytestring containers data-default Diff directory fail + filemanip filepath ghc ghc-boot ghc-paths HUnit mtl + ordered-containers silently syb + ]; description = "ExactPrint for GHC"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-exactprint_1_6_1" = callPackage @@ -110268,27 +109669,6 @@ self: { }: mkDerivation { pname = "ghc-lib"; - version = "9.0.2.20211226"; - sha256 = "0988500fwl24nh1i2pv22332sx8hgi6b2229ff3drd9jgpp886x1"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory - exceptions filepath ghc-lib-parser ghc-prim hpc parsec pretty - process rts time transformers unix - ]; - libraryToolDepends = [ alex happy ]; - description = "The GHC API, decoupled from GHC versions"; - license = lib.licenses.bsd3; - }) {}; - - "ghc-lib_9_2_5_20221107" = callPackage - ({ mkDerivation, alex, array, base, binary, bytestring, containers - , deepseq, directory, exceptions, filepath, ghc-lib-parser - , ghc-prim, happy, hpc, parsec, pretty, process, rts, time - , transformers, unix - }: - mkDerivation { - pname = "ghc-lib"; version = "9.2.5.20221107"; sha256 = "0layv7zsjlah3dmr538g34pg7cwwiawg0xcihyjxdh2x5q5qi05s"; enableSeparateDataOutput = true; @@ -110300,7 +109680,6 @@ self: { libraryToolDepends = [ alex happy ]; description = "The GHC API, decoupled from GHC versions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-lib_9_4_3_20221104" = callPackage @@ -110352,26 +109731,6 @@ self: { }: mkDerivation { pname = "ghc-lib-parser"; - version = "9.0.2.20211226"; - sha256 = "0krf99pfnyfly22y5pgfsgpxfvbax9jivzjkhgg67hl0synladvz"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory - exceptions filepath ghc-prim parsec pretty process time - transformers unix - ]; - libraryToolDepends = [ alex happy ]; - description = "The GHC API, decoupled from GHC versions"; - license = lib.licenses.bsd3; - }) {}; - - "ghc-lib-parser_9_2_5_20221107" = callPackage - ({ mkDerivation, alex, array, base, binary, bytestring, containers - , deepseq, directory, exceptions, filepath, ghc-prim, happy, parsec - , pretty, process, time, transformers, unix - }: - mkDerivation { - pname = "ghc-lib-parser"; version = "9.2.5.20221107"; sha256 = "1xh8rm5lwbh96g4v34whkcbb1yjsyvx3rwwycj30lrglhqk7f4c4"; enableSeparateDataOutput = true; @@ -110383,7 +109742,6 @@ self: { libraryToolDepends = [ alex happy ]; description = "The GHC API, decoupled from GHC versions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-lib-parser_9_4_3_20221104" = callPackage @@ -110434,8 +109792,8 @@ self: { }: mkDerivation { pname = "ghc-lib-parser-ex"; - version = "9.0.0.6"; - sha256 = "1lqhddx4sw2d407q12ny1ims4khjxgajlk07wvrw0wcgmx91dmc7"; + version = "9.2.0.4"; + sha256 = "138wkpy7qpdkp07028flab3lwq4b3mns0qcrkfrhclixlz8pi74v"; libraryHaskellDepends = [ base bytestring containers ghc ghc-boot ghc-boot-th uniplate ]; @@ -110447,26 +109805,6 @@ self: { license = lib.licenses.bsd3; }) {}; - "ghc-lib-parser-ex_9_2_0_4" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, extra - , filepath, ghc-lib-parser, tasty, tasty-hunit, uniplate - }: - mkDerivation { - pname = "ghc-lib-parser-ex"; - version = "9.2.0.4"; - sha256 = "138wkpy7qpdkp07028flab3lwq4b3mns0qcrkfrhclixlz8pi74v"; - libraryHaskellDepends = [ - base bytestring containers ghc-lib-parser uniplate - ]; - testHaskellDepends = [ - base directory extra filepath ghc-lib-parser tasty tasty-hunit - uniplate - ]; - description = "Algorithms on GHC parse trees"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "ghc-lib-parser-ex_9_2_1_1" = callPackage ({ mkDerivation, base, bytestring, containers, directory, extra , filepath, ghc-lib-parser, tasty, tasty-hunit, uniplate @@ -110768,8 +110106,8 @@ self: { }: mkDerivation { pname = "ghc-prof"; - version = "1.4.1.11"; - sha256 = "1i6a3dx9ml8r4q8rvap7rw3qhvksgaws1hzna34ldpkwh6b7kfxy"; + version = "1.4.1.12"; + sha256 = "15gshlj8jp85m9y05z1wmssq5rkqyix9890hy1rkmy7nmkhij6mj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -110983,13 +110321,13 @@ self: { }: mkDerivation { pname = "ghc-syntax-highlighter"; - version = "0.0.7.0"; - sha256 = "123kvcdlzx18n14122xbpp587byfd8w0z886grlxkzinb53bmzg6"; + version = "0.0.8.0"; + sha256 = "1s6bq90s75qfiv54qsskawv3ihwjhdml4fxq56ww01p54mnrwr27"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base ghc-lib-parser text ]; testHaskellDepends = [ base hspec text ]; testToolDepends = [ hspec-discover ]; - description = "Syntax highlighter for Haskell using lexer of GHC itself"; + description = "Syntax highlighter for Haskell using the lexer of GHC"; license = lib.licenses.bsd3; }) {}; @@ -111011,9 +110349,9 @@ self: { "ghc-tags" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , containers, deepseq, directory, filepath, ghc-lib, ghc-paths - , optparse-applicative, process, stm, temporary, text, time, vector - , yaml + , containers, deepseq, directory, filepath, ghc, ghc-boot + , ghc-paths, optparse-applicative, process, stm, temporary, text + , time, vector, yaml }: mkDerivation { pname = "ghc-tags"; @@ -111023,14 +110361,12 @@ self: { isExecutable = true; executableHaskellDepends = [ aeson async attoparsec base bytestring containers deepseq directory - filepath ghc-lib ghc-paths optparse-applicative process stm + filepath ghc ghc-boot ghc-paths optparse-applicative process stm temporary text time vector yaml ]; description = "Utility for generating ctags and etags with GHC API"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "ghc-tags"; - broken = true; }) {}; "ghc-tags-core" = callPackage @@ -111235,6 +110571,32 @@ self: { license = lib.licenses.bsd3; }) {}; + "ghc-typelits-presburger_0_7_1_0" = callPackage + ({ mkDerivation, base, containers, equational-reasoning, ghc + , ghc-tcplugins-extra, mtl, pretty, reflection, syb, tasty + , tasty-discover, tasty-expected-failure, tasty-hunit, text + , transformers + }: + mkDerivation { + pname = "ghc-typelits-presburger"; + version = "0.7.1.0"; + sha256 = "03lgzfn0vhcnfyyhb2d2shjwhinzk293k0yjlv6wac2yxxfrvnaj"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers ghc ghc-tcplugins-extra mtl pretty reflection syb + transformers + ]; + testHaskellDepends = [ + base equational-reasoning tasty tasty-discover + tasty-expected-failure tasty-hunit text + ]; + testToolDepends = [ tasty-discover ]; + description = "Presburger Arithmetic Solver for GHC Type-level natural numbers"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ghc-usage" = callPackage ({ mkDerivation, base, containers, ghc, ghc-paths, unix }: mkDerivation { @@ -111311,8 +110673,8 @@ self: { }: mkDerivation { pname = "ghci-dap"; - version = "0.0.19.0"; - sha256 = "07f0q83pcma3c0v7sdkkb1nzx40f55v47v44gaa2pg6clkl7p1gx"; + version = "0.0.20.0"; + sha256 = "11jzlvv48fvp87p2rkz3rab0707fb3yq0lz1146zh44adpkgf5vb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -111526,8 +110888,7 @@ self: { , hslogger, implicit-hie, implicit-hie-cradle, lens, list-t, lsp , lsp-test, lsp-types, monoid-subclasses, mtl, network-uri , opentelemetry, optparse-applicative, parallel, prettyprinter - , prettyprinter-ansi-terminal, QuickCheck, random - , record-dot-preprocessor, record-hasfield, regex-tdfa + , prettyprinter-ansi-terminal, QuickCheck, random, regex-tdfa , safe-exceptions, shake, sorted-list, sqlite-simple, stm , stm-containers, syb, tasty, tasty-expected-failure, tasty-hunit , tasty-quickcheck, tasty-rerun, text, text-rope, time @@ -111565,10 +110926,9 @@ self: { aeson async base containers data-default directory extra filepath fuzzy ghc ghc-typelits-knownnat hls-plugin-api lens list-t lsp lsp-test lsp-types monoid-subclasses network-uri QuickCheck random - record-dot-preprocessor record-hasfield regex-tdfa shake - sqlite-simple stm stm-containers tasty tasty-expected-failure - tasty-hunit tasty-quickcheck tasty-rerun text text-rope - unordered-containers + regex-tdfa shake sqlite-simple stm stm-containers tasty + tasty-expected-failure tasty-hunit tasty-quickcheck tasty-rerun + text text-rope unordered-containers ]; testToolDepends = [ implicit-hie ]; description = "The core of an IDE"; @@ -111715,6 +111075,7 @@ self: { description = "GHCJS DOM Hello World, an example package"; license = lib.licenses.mit; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "ghcjs-dom-jsaddle" = callPackage @@ -111964,7 +111325,6 @@ self: { license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "ghcup"; - broken = true; }) {}; "ghczdecode" = callPackage @@ -112787,6 +112147,8 @@ self: { ]; description = "Declarative GTK+ programming in Haskell"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "gi-gtk-declarative-app-simple" = callPackage @@ -112808,6 +112170,7 @@ self: { ]; description = "Declarative GTK+ programming in Haskell in the style of Pux"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "gi-gtk-hs" = callPackage @@ -113123,8 +112486,6 @@ self: { ''; description = "PangoCairo bindings"; license = lib.licenses.lgpl21Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) cairo; inherit (pkgs) pango;}; "gi-poppler" = callPackage @@ -113358,8 +112719,8 @@ self: { "gi-xlib" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, haskell-gi - , haskell-gi-base, haskell-gi-overloading, text, transformers - , xlibsWrapper + , haskell-gi-base, haskell-gi-overloading, libX11, text + , transformers }: mkDerivation { pname = "gi-xlib"; @@ -113370,10 +112731,10 @@ self: { base bytestring containers haskell-gi haskell-gi-base haskell-gi-overloading text transformers ]; - libraryPkgconfigDepends = [ xlibsWrapper ]; + libraryPkgconfigDepends = [ libX11 ]; description = "xlib bindings"; license = lib.licenses.lgpl21Only; - }) {inherit (pkgs) xlibsWrapper;}; + }) {inherit (pkgs.xorg) libX11;}; "giak" = callPackage ({ mkDerivation, async, base, bytestring, Cabal, containers @@ -113452,9 +112813,7 @@ self: { ]; description = "An implementation of the Jinja2 template language in Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "ginger"; - broken = true; }) {}; "gingersnap" = callPackage @@ -113546,6 +112905,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "gipeda"; + broken = true; }) {}; "giphy-api" = callPackage @@ -113666,8 +113026,8 @@ self: { }: mkDerivation { pname = "git-annex"; - version = "10.20221103"; - sha256 = "0fwg74ldw2paq9dr052hqjz2x219zkkramvm8jskpnnnch9c6jgm"; + version = "10.20221212"; + sha256 = "0afnl2w29w4j0229rsla93dzkmhcjlp8dv76sr861n186ywv8rzg"; configureFlags = [ "-fassistant" "-f-benchmark" "-fdbus" "-f-debuglocks" "-fmagicmime" "-fnetworkbsd" "-fpairing" "-fproduction" "-fs3" "-ftorrentparser" @@ -113737,7 +113097,9 @@ self: { ]; description = "git checkout command-line tool"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "git-brunch"; + broken = true; }) {}; "git-checklist" = callPackage @@ -113983,7 +113345,6 @@ self: { ]; description = "Passively snapshots working tree changes efficiently"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "git-monitor"; }) {}; @@ -114206,38 +113567,6 @@ self: { , hspec, hspec-discover, http-client, http-client-tls , http-link-header, http-types, iso8601-time, mtl, network-uri , tagged, text, time-compat, tls, transformers, transformers-compat - , unordered-containers, vector, vector-instances - }: - mkDerivation { - pname = "github"; - version = "0.27"; - sha256 = "0vlqsdhhjnfw9wk5vn1i8cmwa45vgczhz4nn46mwgs600xfn94am"; - revision = "1"; - editedCabalFile = "02424a74kjzmwl0nwc4gl7xg0cgdsbspwj3mzzzgx5xxlh3vi212"; - libraryHaskellDepends = [ - aeson base base-compat base16-bytestring binary binary-instances - bytestring containers cryptohash-sha1 deepseq deepseq-generics - exceptions hashable http-client http-client-tls http-link-header - http-types iso8601-time mtl network-uri tagged text time-compat tls - transformers transformers-compat unordered-containers vector - vector-instances - ]; - testHaskellDepends = [ - aeson base base-compat bytestring file-embed hspec tagged text - unordered-containers vector - ]; - testToolDepends = [ hspec-discover ]; - description = "Access to the GitHub API, v3"; - license = lib.licenses.bsd3; - }) {}; - - "github_0_28_0_1" = callPackage - ({ mkDerivation, aeson, base, base-compat, base16-bytestring - , binary, binary-instances, bytestring, containers, cryptohash-sha1 - , deepseq, deepseq-generics, exceptions, file-embed, hashable - , hspec, hspec-discover, http-client, http-client-tls - , http-link-header, http-types, iso8601-time, mtl, network-uri - , tagged, text, time-compat, tls, transformers, transformers-compat , unordered-containers, vector }: mkDerivation { @@ -114258,7 +113587,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Access to the GitHub API, v3"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "github-backup" = callPackage @@ -114369,8 +113697,8 @@ self: { pname = "github-rest"; version = "1.1.2"; sha256 = "139ysq1m1ndy6z1znfd1np25ynxankkfm6xmwabhdr7yiqzi2v1b"; - revision = "1"; - editedCabalFile = "09vinl6l5jy8bz504bhw3g2baj9fc0fym2vnh8q76xzmz2s0b686"; + revision = "2"; + editedCabalFile = "0390zxa270d8x8a0imd71z72l6hxnn1ip6jjgrrvrs3zj20c7adp"; libraryHaskellDepends = [ aeson base bytestring http-client http-client-tls http-types jwt mtl scientific text time transformers unliftio unliftio-core @@ -114482,8 +113810,8 @@ self: { }: mkDerivation { pname = "github-webhooks"; - version = "0.15.0"; - sha256 = "0cmavbh7c59pimspjj42mwlac5jmlgagjsw4239hcsrna5yi4wdz"; + version = "0.16.0"; + sha256 = "1h0l4p0wyy4d6k43gxjfjx2fv0a59xd900dr14ydxdjn75yhc7g0"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring cryptonite deepseq deepseq-generics memory text time vector @@ -114493,15 +113821,15 @@ self: { license = lib.licenses.mit; }) {}; - "github-webhooks_0_16_0" = callPackage + "github-webhooks_0_17_0" = callPackage ({ mkDerivation, aeson, base, base16-bytestring, bytestring , cryptonite, deepseq, deepseq-generics, hspec, memory, text, time , vector }: mkDerivation { pname = "github-webhooks"; - version = "0.16.0"; - sha256 = "1h0l4p0wyy4d6k43gxjfjx2fv0a59xd900dr14ydxdjn75yhc7g0"; + version = "0.17.0"; + sha256 = "06dh28yqhjmh4gks0r20x6cn1974a0cx1yr3n55l3slr1w9j46bv"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring cryptonite deepseq deepseq-generics memory text time vector @@ -114731,8 +114059,6 @@ self: { ]; description = "Libgit2 backend for gitlib"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gitlib-s3" = callPackage @@ -114857,7 +114183,6 @@ self: { description = "A document store library for Git + JSON"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gitter" = callPackage @@ -115317,15 +114642,14 @@ self: { "gll" = callPackage ({ mkDerivation, array, base, containers, pretty, regex-applicative - , text, time, TypeCompose + , text, time }: mkDerivation { pname = "gll"; - version = "0.4.0.13"; - sha256 = "1kw1wmc59fz87z8xwdbg9988ghvhdyfj594cxnd28gw0z04gsz4m"; + version = "0.4.1.0"; + sha256 = "00gdgyglm4vif41sbi5wx8r69bnvp8ap5wfi4ahxz51ykhmwl2ka"; libraryHaskellDepends = [ array base containers pretty regex-applicative text time - TypeCompose ]; description = "GLL parser with simple combinator interface"; license = lib.licenses.bsd3; @@ -115445,21 +114769,6 @@ self: { }: mkDerivation { pname = "gloss"; - version = "1.13.2.1"; - sha256 = "0ladpnk2zw27bz895b9gphhrmawb0gwvzrmnisk56msjdxwqq5pn"; - libraryHaskellDepends = [ - base bmp bytestring containers ghc-prim gloss-rendering GLUT OpenGL - ]; - description = "Painless 2D vector graphics, animations and simulations"; - license = lib.licenses.mit; - }) {}; - - "gloss_1_13_2_2" = callPackage - ({ mkDerivation, base, bmp, bytestring, containers, ghc-prim - , gloss-rendering, GLUT, OpenGL - }: - mkDerivation { - pname = "gloss"; version = "1.13.2.2"; sha256 = "09yabwajjw6zsbs8p4hsmfz4a032i81d3vnia5f7rrzszbi9svdn"; libraryHaskellDepends = [ @@ -115467,7 +114776,6 @@ self: { ]; description = "Painless 2D vector graphics, animations and simulations"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "gloss-accelerate" = callPackage @@ -115635,21 +114943,6 @@ self: { ({ mkDerivation, base, bmp, bytestring, containers, GLUT, OpenGL }: mkDerivation { pname = "gloss-rendering"; - version = "1.13.1.1"; - sha256 = "1pkzm7zzfdya8cz3h66akx8785h3vxbnyb815liw4nilvwg01d9x"; - revision = "1"; - editedCabalFile = "10x83cpxp6yrmamjg4kjm3pzlhh6zj2rdw686py0vcx0jrjy3qg7"; - libraryHaskellDepends = [ - base bmp bytestring containers GLUT OpenGL - ]; - description = "Gloss picture data types and rendering functions"; - license = lib.licenses.mit; - }) {}; - - "gloss-rendering_1_13_1_2" = callPackage - ({ mkDerivation, base, bmp, bytestring, containers, GLUT, OpenGL }: - mkDerivation { - pname = "gloss-rendering"; version = "1.13.1.2"; sha256 = "0zrdqh72gswyn27x43ifhy4q8m7hvmv24b5ki3hyra5yq74njlsm"; libraryHaskellDepends = [ @@ -115657,7 +114950,6 @@ self: { ]; description = "Gloss picture data types and rendering functions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "gloss-sodium" = callPackage @@ -115765,20 +115057,22 @@ self: { }: mkDerivation { pname = "gltf-loader"; - version = "0.2.0.1"; - sha256 = "0dx4v2sffg6ffzf5asvc18a2k258qyh68sxmcdf4ycfr5wfskl15"; + version = "0.3.0.0"; + sha256 = "0xzcnv9alp78y61s52n8palqnp9jdyz0d9ggx2cqlh2xyf8020xl"; + revision = "1"; + editedCabalFile = "1xxnzvj8lksk10kzaf89xm26vafbfkixhji8zankz9cg63fwmsz1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base binary bytestring gltf-codec linear microlens rio - unordered-containers + base binary bytestring gltf-codec linear microlens + microlens-platform rio unordered-containers ]; executableHaskellDepends = [ base linear microlens microlens-platform optparse-simple rio ]; testHaskellDepends = [ - base base64 binary bytestring gltf-codec hspec linear microlens rio - unordered-containers + base base64 binary bytestring gltf-codec hspec linear microlens + microlens-platform rio unordered-containers ]; description = "High level GlTF loader"; license = lib.licenses.mit; @@ -115922,8 +115216,6 @@ self: { ]; description = "turtle like LOGO with glut"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gmail-simple" = callPackage @@ -116383,9 +115675,7 @@ self: { executableHaskellDepends = [ base criterion megaparsec text ]; description = "Megaparsec parser for Godot `tscn` and `gdextension` files"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "bench"; - broken = true; }) {}; "gofer-prelude" = callPackage @@ -118821,6 +118111,7 @@ self: { ]; description = "Bindings to the Google Geocoding API (formerly Maps Geocoding API)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "google-oauth2" = callPackage @@ -118955,6 +118246,8 @@ self: { ]; description = "Bindings to the Google Maps Static API (formerly Static Maps API)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "google-translate" = callPackage @@ -119308,6 +118601,8 @@ self: { ]; description = "A Haskell Vault KVv2 secret engine client"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "gotta-go-fast" = callPackage @@ -119326,7 +118621,9 @@ self: { ]; description = "A command line utility for practicing typing"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "gotta-go-fast"; + broken = true; }) {}; "gotyno-hs" = callPackage @@ -119419,8 +118716,8 @@ self: { }: mkDerivation { pname = "gpmf"; - version = "0.1.1.1"; - sha256 = "1yl84ghhif3h485gg618ig006kph7ifri0jmi0bwii7da4i1ahsi"; + version = "0.1.2.0"; + sha256 = "0z0l1jl7am48lc8c92jb6l12r5khgil9d5n2rrp53n7ncsljbh1n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -119728,7 +119025,6 @@ self: { description = "Functional Reactive Programming core"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "grapefruit-records" = callPackage @@ -120286,7 +119582,9 @@ self: { ]; description = "Present the module dependencies of a program as a \"dot\" graph"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "graphmod"; + broken = true; }) {}; "graphmod-plugin" = callPackage @@ -120373,8 +119671,8 @@ self: { }: mkDerivation { pname = "graphql-client"; - version = "1.2.0"; - sha256 = "1570gsfz3f2dlqpmmb00kr2hcjsfz9p4knfnwvjcm2lij7avcvnp"; + version = "1.2.1"; + sha256 = "02wrwb5vgj4px6m178wmfzzy1d2h6018wj106n0j4lzbxyh107iy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -120382,13 +119680,11 @@ self: { template-haskell text transformers unliftio-core ]; executableHaskellDepends = [ - aeson aeson-schemas base bytestring file-embed http-client - http-client-tls http-types mtl optparse-applicative path path-io - template-haskell text transformers typed-process unliftio-core + base bytestring file-embed optparse-applicative path path-io + template-haskell typed-process ]; testHaskellDepends = [ - aeson aeson-schemas base http-client http-client-tls http-types mtl - tasty tasty-hunit template-haskell text transformers unliftio-core + aeson aeson-schemas base mtl tasty tasty-hunit ]; description = "A client for Haskell programs to query a GraphQL API"; license = lib.licenses.bsd3; @@ -120414,8 +119710,6 @@ self: { ]; description = "GraphQL with batteries"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "graphql-utils" = callPackage @@ -120725,9 +120019,8 @@ self: { "greenclip" = callPackage ({ mkDerivation, base, binary, bytestring, directory, exceptions - , hashable, libXau, libXScrnSaver, microlens, microlens-mtl + , hashable, libX11, libXau, libXScrnSaver, microlens, microlens-mtl , protolude, text, tomland, unix, vector, wordexp, X11, xcb, xdmcp - , xlibsWrapper }: mkDerivation { pname = "greenclip"; @@ -120740,13 +120033,13 @@ self: { microlens-mtl protolude text tomland unix vector wordexp X11 ]; executablePkgconfigDepends = [ - libXau libXScrnSaver xcb xdmcp xlibsWrapper + libX11 libXau libXScrnSaver xcb xdmcp ]; description = "Simple clipboard manager to be integrated with rofi"; license = lib.licenses.bsd3; mainProgram = "greenclip"; - }) {inherit (pkgs.xorg) libXScrnSaver; inherit (pkgs.xorg) libXau; - xcb = null; xdmcp = null; inherit (pkgs) xlibsWrapper;}; + }) {inherit (pkgs.xorg) libX11; inherit (pkgs.xorg) libXScrnSaver; + inherit (pkgs.xorg) libXau; xcb = null; xdmcp = null;}; "greg-client" = callPackage ({ mkDerivation, base, binary, bytestring, clock, hostname, network @@ -120813,7 +120106,6 @@ self: { description = "Practical Deep Learning in Haskell"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "greplicate" = callPackage @@ -120835,46 +120127,45 @@ self: { }) {}; "greskell" = callPackage - ({ mkDerivation, aeson, base, bytestring, doctest, doctest-discover - , exceptions, greskell-core, hashable, hspec, hspec-discover - , semigroups, should-not-typecheck, text, transformers - , unordered-containers, vector + ({ mkDerivation, aeson, base, bytestring, exceptions, greskell-core + , hashable, hspec, hspec-discover, semigroups, should-not-typecheck + , text, transformers, unordered-containers, vector }: mkDerivation { pname = "greskell"; - version = "2.0.0.0"; - sha256 = "0havwzskc9abganrgj991r7szcagzw4vkm8qh6b7xqykdf4479xv"; + version = "2.0.1.0"; + sha256 = "0p9sv21dj7sa9w5abz78q5mq72908iih8x61w19xf5z9rz5n5war"; libraryHaskellDepends = [ aeson base exceptions greskell-core hashable semigroups text transformers unordered-containers vector ]; testHaskellDepends = [ - aeson base bytestring doctest doctest-discover greskell-core hspec - should-not-typecheck text unordered-containers + aeson base bytestring greskell-core hspec should-not-typecheck text + unordered-containers ]; - testToolDepends = [ doctest-discover hspec-discover ]; + testToolDepends = [ hspec-discover ]; description = "Haskell binding for Gremlin graph query language"; license = lib.licenses.bsd3; }) {}; "greskell-core" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, doctest - , doctest-discover, hashable, hspec, hspec-discover, QuickCheck - , scientific, semigroups, text, unordered-containers, uuid, vector + ({ mkDerivation, aeson, base, bytestring, containers, hashable + , hspec, hspec-discover, QuickCheck, scientific, semigroups, text + , unordered-containers, uuid, vector }: mkDerivation { pname = "greskell-core"; - version = "1.0.0.0"; - sha256 = "0b86rwghrbqzqk5vb9n6qsc4a12pbnwvvy20wdiv1g51dpyi440a"; + version = "1.0.0.1"; + sha256 = "1pjsx1cjm18k2x0h2b80y7qv666c2w5w2gz49qi0vdhx1kgrnzvr"; libraryHaskellDepends = [ - aeson base containers hashable scientific semigroups text - unordered-containers uuid vector + aeson base bytestring containers hashable scientific semigroups + text unordered-containers uuid vector ]; testHaskellDepends = [ - aeson base bytestring doctest doctest-discover hspec QuickCheck - text unordered-containers vector + aeson base bytestring hspec QuickCheck text unordered-containers + vector ]; - testToolDepends = [ doctest-discover hspec-discover ]; + testToolDepends = [ hspec-discover ]; description = "Haskell binding for Gremlin graph query language - core data types and tools"; license = lib.licenses.bsd3; }) {}; @@ -120886,8 +120177,8 @@ self: { }: mkDerivation { pname = "greskell-websocket"; - version = "1.0.0.0"; - sha256 = "1nw8jz843080w6jq4j8bmqv9pz66va1yp36a0d1vkybhdhlxs5vy"; + version = "1.0.0.1"; + sha256 = "1r9bs5aswh4kxsmwylpizp2b9xiwljic5h18k6qr9i2hgmpshqcn"; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring greskell-core hashtables safe-exceptions stm text unordered-containers uuid @@ -121031,6 +120322,24 @@ self: { }: mkDerivation { pname = "gridtables"; + version = "0.0.3.0"; + sha256 = "1akix9flnax6dx3s9c7yyzb19nw13y8rmh0kz7y3hpjlkaz659xy"; + revision = "1"; + editedCabalFile = "0m2651z81n8s6hb8id7y6k2kprsgwnj7pcd6p8lmdpkzzz3wwd0c"; + libraryHaskellDepends = [ + array base containers doclayout parsec text + ]; + testHaskellDepends = [ array base parsec tasty tasty-hunit text ]; + description = "Parser for reStructuredText-style grid tables"; + license = lib.licenses.mit; + }) {}; + + "gridtables_0_1_0_0" = callPackage + ({ mkDerivation, array, base, containers, doclayout, parsec, tasty + , tasty-hunit, text + }: + mkDerivation { + pname = "gridtables"; version = "0.1.0.0"; sha256 = "1smhbb2jxysbqhxww5rikjfnhsdbf0gq3kgnn6ikjzcrqwdk9b6n"; libraryHaskellDepends = [ @@ -121039,6 +120348,7 @@ self: { testHaskellDepends = [ array base parsec tasty tasty-hunit text ]; description = "Parser for reStructuredText-style grid tables"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "grm" = callPackage @@ -121164,6 +120474,8 @@ self: { ]; description = "Type-safe datatype-database mapping library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "groundhog-converters" = callPackage @@ -121226,7 +120538,6 @@ self: { description = "MySQL backend for the groundhog library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "groundhog-postgresql" = callPackage @@ -121245,6 +120556,7 @@ self: { ]; description = "PostgreSQL backend for the groundhog library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "groundhog-sqlite" = callPackage @@ -121262,6 +120574,7 @@ self: { ]; description = "Sqlite3 backend for the groundhog library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "groundhog-th" = callPackage @@ -121281,7 +120594,6 @@ self: { description = "Type-safe datatype-database mapping library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "group-by-date" = callPackage @@ -121300,7 +120612,9 @@ self: { ]; description = "Shell command for grouping files by dates into folders"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "group-by-date"; + broken = true; }) {}; "group-theory" = callPackage @@ -121404,11 +120718,13 @@ self: { ({ mkDerivation, base, generic-data, groups }: mkDerivation { pname = "groups-generic"; - version = "0.2.0.0"; - sha256 = "0a13x4dc114qz5r97cpg2bbdch1kn6gfmndf9glqx2nbhx6qg654"; + version = "0.3.1.0"; + sha256 = "1v9mw478x6kfv38m13kypfmz9w8vn3xkvff3gy9g7x29aq5bvjfy"; libraryHaskellDepends = [ base generic-data groups ]; description = "Generically derive Group instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "grow-vector" = callPackage @@ -121428,6 +120744,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Mutable vector with efficient appends"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "growler" = callPackage @@ -121616,8 +120934,8 @@ self: { }: mkDerivation { pname = "gscholar-rss"; - version = "0.3.0.0"; - sha256 = "1hvmnzfh4qqbx41kih1py9hn9kxkribk8vfj0wx9i8v0sac5g87s"; + version = "0.3.0.2"; + sha256 = "0nxkn5irbijfrlmm7z9jyw6mahdwgmr42kmlzd7wzdfnz58dbqrr"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -121791,7 +121109,6 @@ self: { description = "GTFS RealTime protobafs library (autogenerated from .proto file)"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gtk" = callPackage @@ -121974,16 +121291,16 @@ self: { }) {}; "gtk-traymanager" = callPackage - ({ mkDerivation, base, glib, gtk3, xlibsWrapper }: + ({ mkDerivation, base, glib, gtk3, libX11 }: mkDerivation { pname = "gtk-traymanager"; version = "1.0.1"; sha256 = "0vc1gwhg5l7l5iqb1i3zwd1bsy8fxsiwkwzza7j15zi07f97k7di"; libraryHaskellDepends = [ base glib gtk3 ]; - libraryPkgconfigDepends = [ xlibsWrapper ]; + libraryPkgconfigDepends = [ libX11 ]; description = "A wrapper around the eggtraymanager library for Linux system trays"; license = lib.licenses.lgpl21Only; - }) {inherit (pkgs) xlibsWrapper;}; + }) {inherit (pkgs.xorg) libX11;}; "gtk2hs-buildtools" = callPackage ({ mkDerivation, alex, array, base, Cabal, containers, directory @@ -122373,6 +121690,21 @@ self: { license = lib.licenses.gpl3Only; }) {}; + "gvti" = callPackage + ({ mkDerivation, base, directory, mmsyn3, process }: + mkDerivation { + pname = "gvti"; + version = "0.2.0.1"; + sha256 = "1bbkzp795h06xgsdfl5sssxi851l7h0ck8jfc5wdbqx9dpcv46x6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base directory mmsyn3 process ]; + executableHaskellDepends = [ base directory mmsyn3 process ]; + description = "GraphViz Tabular Interface"; + license = lib.licenses.mit; + mainProgram = "gvti"; + }) {}; + "gw" = callPackage ({ mkDerivation, base, unix }: mkDerivation { @@ -122481,23 +121813,22 @@ self: { }) {}; "h-raylib" = callPackage - ({ mkDerivation, base, c, libGL, libX11, libXcursor, libXext, libXi + ({ mkDerivation, base, c, libGL, libX11, libXcursor, libXi , libXinerama, libXrandr }: mkDerivation { pname = "h-raylib"; - version = "4.5.0.3"; - sha256 = "05k7z23fkjdwlq379vcd9ahqch52hkwlpmy774xafrbh2wrfli3d"; + version = "4.5.0.8"; + sha256 = "0v2aclbqjw98wa6vwv0165b28pc6n9mvbsppxnn3y1nxsjn6nwdf"; libraryHaskellDepends = [ base ]; librarySystemDepends = [ - c libGL libX11 libXcursor libXext libXi libXinerama libXrandr + c libGL libX11 libXcursor libXi libXinerama libXrandr ]; description = "Raylib bindings for Haskell"; license = lib.licenses.asl20; }) {c = null; inherit (pkgs) libGL; inherit (pkgs.xorg) libX11; - inherit (pkgs.xorg) libXcursor; inherit (pkgs.xorg) libXext; - inherit (pkgs.xorg) libXi; inherit (pkgs.xorg) libXinerama; - inherit (pkgs.xorg) libXrandr;}; + inherit (pkgs.xorg) libXcursor; inherit (pkgs.xorg) libXi; + inherit (pkgs.xorg) libXinerama; inherit (pkgs.xorg) libXrandr;}; "h-reversi" = callPackage ({ mkDerivation, base, blank-canvas, containers, hspec, QuickCheck @@ -122572,14 +121903,15 @@ self: { }: mkDerivation { pname = "hArduino"; - version = "1.1"; - sha256 = "1xpv4z6lgphq5cy1kz9navyrkx4p83bbvjc5dhlp948cd0fsn17b"; + version = "1.2"; + sha256 = "160k6p5spr6z06qrrgb6fyh8fjdjsywzs0jpnwf4yqfn7kaggqwh"; + revision = "1"; + editedCabalFile = "06jxrr2chksq9j5xd2ns5sbvmb5ispxpajlc1b5nkf39hi8brqxm"; libraryHaskellDepends = [ base bytestring containers mtl serialport time ]; description = "Control your Arduino board from Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hBDD" = callPackage @@ -122910,6 +122242,8 @@ self: { libraryHaskellDepends = [ attoparsec base bytestring ]; description = "haskell implementation of RESP (REdis Serialization Protocol)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hS3" = callPackage @@ -123225,6 +122559,7 @@ self: { libraryHaskellDepends = [ base bytestring cgi containers hack ]; description = "Allows programs written against MonadCGI to run with any hack handler. (deprecated)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hack-handler-cgi" = callPackage @@ -123307,7 +122642,6 @@ self: { description = "Hack Happstack server handler"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hack-handler-hyena" = callPackage @@ -123340,7 +122674,6 @@ self: { description = "Hack Kibro handler"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hack-handler-simpleserver" = callPackage @@ -123441,6 +122774,8 @@ self: { ]; description = "Hack2 contrib"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hack2-contrib-extra" = callPackage @@ -123459,6 +122794,7 @@ self: { ]; description = "Hack2 contrib extra"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hack2-handler-happstack-server" = callPackage @@ -123625,7 +122961,7 @@ self: { ]; description = "Access cabal-install's Hackage database via Data.Map"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "hackage-diff" = callPackage @@ -123679,6 +123015,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "hackage-mirror"; + broken = true; }) {}; "hackage-plot" = callPackage @@ -123762,9 +123099,7 @@ self: { ]; description = "Manage secure file-based package repositories"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hackage-repo-tool"; - broken = true; }) {}; "hackage-security" = callPackage @@ -123777,10 +123112,8 @@ self: { }: mkDerivation { pname = "hackage-security"; - version = "0.6.2.2"; - sha256 = "0xmjw3frssdv3glhdg3yivdy38h5icz6xywngrahc19220ba6cx8"; - revision = "1"; - editedCabalFile = "01fhp3kzc1wfvixzgnz4y52bzm4sickk1cj7pksrwmbi90dghv0s"; + version = "0.6.2.3"; + sha256 = "0rm0avcc1k247qbrajhzi3vz92cgcc4nr3kbhhfmfm8rjxv0bvjj"; libraryHaskellDepends = [ base base16-bytestring base64-bytestring bytestring Cabal Cabal-syntax containers cryptohash-sha256 directory ed25519 @@ -124408,6 +123741,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "A simple Hadoop streaming library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hadoop-tools" = callPackage @@ -125332,33 +124667,6 @@ self: { "hal" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, bytestring - , case-insensitive, conduit, conduit-extra, containers, envy - , exceptions, hashable, hedgehog, hspec, hspec-hedgehog - , http-client, http-types, mtl, raw-strings-qq, scientific, text - , time, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "hal"; - version = "0.4.10.1"; - sha256 = "1mxlyx0zxvklrybasx8p6di72aw431mbbyj06pb91570j9c46fp0"; - revision = "2"; - editedCabalFile = "143z15p6skr333f1vazhy5hn7rirpkn8zdfh3fzhz311ws7m7lg8"; - libraryHaskellDepends = [ - aeson base base64-bytestring bytestring case-insensitive conduit - conduit-extra containers envy exceptions hashable http-client - http-types mtl scientific text time unordered-containers - ]; - testHaskellDepends = [ - aeson base base64-bytestring bytestring case-insensitive containers - hedgehog hspec hspec-hedgehog http-client http-types raw-strings-qq - scientific text time transformers unordered-containers vector - ]; - description = "A runtime environment for Haskell applications running on AWS Lambda"; - license = lib.licenses.bsd3; - }) {}; - - "hal_1_0_0_1" = callPackage - ({ mkDerivation, aeson, base, base64-bytestring, bytestring , case-insensitive, conduit, conduit-extra, containers, exceptions , hashable, hedgehog, hspec, hspec-hedgehog, http-client , http-types, mtl, raw-strings-qq, scientific, text, time @@ -125380,7 +124688,6 @@ self: { ]; description = "A runtime environment for Haskell applications running on AWS Lambda"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "halberd" = callPackage @@ -125630,6 +124937,8 @@ self: { testHaskellDepends = [ base hedgehog lens ]; description = "Split or combine data structures to and from halves, quarters, eighths"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "halvm-web" = callPackage @@ -125679,6 +124988,7 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "hamlog"; + broken = true; }) {}; "hamid" = callPackage @@ -125715,6 +125025,7 @@ self: { ]; description = "Physics on generalized coordinate systems using Hamiltonian Mechanics and AD"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hamilton-examples"; }) {}; @@ -126386,7 +125697,6 @@ self: { ]; description = "Happstack Authentication Library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "happstack-clientsession" = callPackage @@ -126506,6 +125816,7 @@ self: { ]; description = "Happstack extension for use with FastCGI"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "happstack-fay" = callPackage @@ -126679,7 +125990,6 @@ self: { ]; description = "Support for using JMacro with Happstack"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "happstack-lite" = callPackage @@ -126903,6 +126213,7 @@ self: { description = "Utilities for using YUI3 with Happstack"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "happy_1_19_12" = callPackage @@ -126969,6 +126280,8 @@ self: { libraryHaskellDepends = [ base Chart Chart-diagrams ]; description = "Generate simple okay-looking bar plots without much effort"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "happy-meta" = callPackage @@ -127148,6 +126461,8 @@ self: { ]; description = "Deep embedding of hardware descriptions with code generation"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "harfbuzz-pure" = callPackage @@ -127366,6 +126681,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "This library 'Has' transformers"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.turion ]; }) {}; "hasbolt" = callPackage @@ -127391,6 +126707,8 @@ self: { ]; description = "Haskell driver for Neo4j 3+ (BOLT protocol)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasbolt-extras" = callPackage @@ -127416,6 +126734,7 @@ self: { testHaskellDepends = [ base doctest ]; description = "Extras for hasbolt library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "example"; }) {}; @@ -127497,7 +126816,9 @@ self: { ]; description = "A TUI for reviewing notes using 'flashcards' written with markdown-like syntax"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hascard"; + broken = true; }) {}; "hascas" = callPackage @@ -127662,34 +126983,10 @@ self: { }: mkDerivation { pname = "hashable"; - version = "1.3.5.0"; - sha256 = "11lqw6xbjzc1gpn4qlrqzq9kjgaw5pr7dgmx2rq1j6r7shndiams"; - revision = "1"; - editedCabalFile = "1mwilvbc5f4myxz4vj95kx6cqqn7nfjy99v8cmqdxy90napywars"; - libraryHaskellDepends = [ - base bytestring containers deepseq ghc-bignum ghc-prim text - ]; - testHaskellDepends = [ - base bytestring ghc-prim HUnit QuickCheck random test-framework - test-framework-hunit test-framework-quickcheck2 text unix - ]; - description = "A class for types that can be converted to a hash value"; - license = lib.licenses.bsd3; - }) {}; - - "hashable_1_4_1_0" = callPackage - ({ mkDerivation, base, base-orphans, bytestring, containers - , deepseq, ghc-bignum, ghc-prim, HUnit, QuickCheck, random - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , text, unix - }: - mkDerivation { - pname = "hashable"; version = "1.4.1.0"; sha256 = "11sycr73821amdz8g0k8c97igi4z7f9xdvgaxlkxhsp6h310bcz1"; libraryHaskellDepends = [ - base base-orphans bytestring containers deepseq ghc-bignum ghc-prim - text + base bytestring containers deepseq ghc-bignum ghc-prim text ]; testHaskellDepends = [ base bytestring ghc-prim HUnit QuickCheck random test-framework @@ -127697,7 +126994,6 @@ self: { ]; description = "A class for types that can be converted to a hash value"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hashable-accelerate" = callPackage @@ -127762,8 +127058,6 @@ self: { libraryHaskellDepends = [ base hashable sorted-list time-compat ]; description = "Provides instances missing from Hashable"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hashable-time" = callPackage @@ -127824,8 +127118,8 @@ self: { }: mkDerivation { pname = "hashes"; - version = "0.2.2.1"; - sha256 = "0ni9z93k89nsswzs4xmb78l7cq7142mg841b70lxgbf69i1wd8z8"; + version = "0.2.3"; + sha256 = "12j5wf6q6fzpc5wnln0b9jf5banamdj2hlsrkiid7i0b85z9vcvg"; libraryHaskellDepends = [ base bytestring ]; librarySystemDepends = [ openssl ]; testHaskellDepends = [ @@ -127871,10 +127165,8 @@ self: { }: mkDerivation { pname = "hashing"; - version = "0.1.0.1"; - sha256 = "044lyj8kyhrm8xs1v3z60g9zh8wdc1nvf79qvans1w6ndjfa3975"; - revision = "2"; - editedCabalFile = "1rwl68jiivw7f2f5cg73sr3dawlbmklnwyiwivrcsihrg4b1z1lq"; + version = "0.1.1.0"; + sha256 = "1a3ws6dlmm9gfpcipq2kx7mzbr0kn3faq2cfnavqdxy18ipvxnbi"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base bytestring ]; @@ -127983,27 +127275,6 @@ self: { }: mkDerivation { pname = "hashtables"; - version = "1.2.4.2"; - sha256 = "1z3h2h0wbiwzj9zs17bggynzgqa77gxcj8h4x28dq3sha81j5rx8"; - libraryHaskellDepends = [ - base ghc-prim hashable primitive vector - ]; - testHaskellDepends = [ - base ghc-prim hashable HUnit mwc-random primitive QuickCheck - test-framework test-framework-hunit test-framework-quickcheck2 - vector - ]; - description = "Mutable hash tables in the ST monad"; - license = lib.licenses.bsd3; - }) {}; - - "hashtables_1_3_1" = callPackage - ({ mkDerivation, base, ghc-prim, hashable, HUnit, mwc-random - , primitive, QuickCheck, test-framework, test-framework-hunit - , test-framework-quickcheck2, vector - }: - mkDerivation { - pname = "hashtables"; version = "1.3.1"; sha256 = "1hsrihk948xfpy14qrhar50b41kp60i1rx8bkadjg1xb4bml0gbg"; libraryHaskellDepends = [ @@ -128016,7 +127287,6 @@ self: { ]; description = "Mutable hash tables in the ST monad"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hashtables-plus" = callPackage @@ -128374,6 +127644,7 @@ self: { ]; description = "Remote Management Platform for Haskell Applications"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "haskell-admin-core" = callPackage @@ -128395,6 +127666,8 @@ self: { ]; description = "Core Modules of Haskell Admin"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskell-admin-health" = callPackage @@ -128414,6 +127687,7 @@ self: { ]; description = "Application Health Component for Haskell Admin"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "haskell-admin-managed-functions" = callPackage @@ -128435,6 +127709,7 @@ self: { ]; description = "Managed Functions integration for Haskell Admin"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "haskell-aliyun" = callPackage @@ -128506,6 +127781,8 @@ self: { testHaskellDepends = [ base bytestring QuickCheck random ]; description = "A bcrypt implementation for haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskell-bitmex-client" = callPackage @@ -128655,8 +127932,6 @@ self: { libraryHaskellDepends = [ base process ]; description = "Simple CoffeeScript API"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskell-compression" = callPackage @@ -128715,8 +127990,8 @@ self: { ({ mkDerivation, base, containers }: mkDerivation { pname = "haskell-dap"; - version = "0.0.15.0"; - sha256 = "1wk6813pwwnph7w1waci9q6r0glsjpayk27kr43zddwd2v0abcld"; + version = "0.0.16.0"; + sha256 = "091jy2dcci8a5sasgrnw26gbbii26p8gg62i1w2ih71rirkdi2r6"; libraryHaskellDepends = [ base containers ]; description = "Haskell implementation of the DAP interface data"; license = lib.licenses.bsd3; @@ -128731,8 +128006,8 @@ self: { }: mkDerivation { pname = "haskell-debug-adapter"; - version = "0.0.37.0"; - sha256 = "1srinycpz3zb86r6b1kyn0ikc8hd62vzgig9ki0lddrxjxc637gg"; + version = "0.0.38.0"; + sha256 = "14qqxyrj31j5jm3q467msl76srx0nvhpid9zjqy6qqq8bf7klhrm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -128800,6 +128075,45 @@ self: { mainProgram = "haskell-docs"; }) {}; + "haskell-docs-cli" = callPackage + ({ mkDerivation, aeson, ansi-wl-pprint, async, base, bytestring + , containers, directory, exceptions, extra, filepath, hashable + , haskeline, hoogle, html-conduit, http-client, http-client-tls + , http-types, mtl, network-uri, optparse-applicative, process + , temporary, terminal-size, text, time, transformers, xml-conduit + }: + mkDerivation { + pname = "haskell-docs-cli"; + version = "1.0.0.0"; + sha256 = "0rz2lgkwddq6q74iscj1268agfrkx6cslpx4w9hs9dcrsifrg7f1"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-wl-pprint async base bytestring containers directory + exceptions extra filepath hashable haskeline hoogle html-conduit + http-client http-client-tls http-types mtl network-uri + optparse-applicative process temporary terminal-size text time + transformers xml-conduit + ]; + executableHaskellDepends = [ + aeson ansi-wl-pprint async base bytestring containers directory + exceptions extra filepath hashable haskeline hoogle html-conduit + http-client http-client-tls http-types mtl network-uri + optparse-applicative process temporary terminal-size text time + transformers xml-conduit + ]; + testHaskellDepends = [ + aeson ansi-wl-pprint async base bytestring containers directory + exceptions extra filepath hashable haskeline hoogle html-conduit + http-client http-client-tls http-types mtl network-uri + optparse-applicative process temporary terminal-size text time + transformers xml-conduit + ]; + description = "Search Hoogle and navigate Hackage from the command line"; + license = lib.licenses.bsd3; + mainProgram = "hdc"; + }) {}; + "haskell-eigen-util" = callPackage ({ mkDerivation, base, eigen, vector }: mkDerivation { @@ -129121,12 +128435,11 @@ self: { , hls-code-range-plugin, hls-eval-plugin , hls-explicit-fixity-plugin, hls-explicit-imports-plugin , hls-floskell-plugin, hls-fourmolu-plugin, hls-gadt-plugin - , hls-graph, hls-haddock-comments-plugin, hls-hlint-plugin - , hls-module-name-plugin, hls-ormolu-plugin, hls-plugin-api - , hls-pragmas-plugin, hls-qualify-imported-names-plugin - , hls-refactor-plugin, hls-refine-imports-plugin, hls-rename-plugin - , hls-retrie-plugin, hls-splice-plugin, hls-stylish-haskell-plugin - , hls-tactics-plugin, hls-test-utils, hp2pretty, hslogger + , hls-graph, hls-hlint-plugin, hls-module-name-plugin + , hls-ormolu-plugin, hls-plugin-api, hls-pragmas-plugin + , hls-qualify-imported-names-plugin, hls-refactor-plugin + , hls-refine-imports-plugin, hls-rename-plugin, hls-retrie-plugin + , hls-stylish-haskell-plugin, hls-test-utils, hp2pretty, hslogger , hspec-expectations, implicit-hie, lens, lens-aeson, lsp, lsp-test , lsp-types, mtl, optparse-applicative, optparse-simple , prettyprinter, process, regex-tdfa, safe-exceptions, shake @@ -129147,11 +128460,10 @@ self: { hls-class-plugin hls-code-range-plugin hls-eval-plugin hls-explicit-fixity-plugin hls-explicit-imports-plugin hls-floskell-plugin hls-fourmolu-plugin hls-gadt-plugin hls-graph - hls-haddock-comments-plugin hls-hlint-plugin hls-module-name-plugin - hls-ormolu-plugin hls-plugin-api hls-pragmas-plugin - hls-qualify-imported-names-plugin hls-refactor-plugin - hls-refine-imports-plugin hls-rename-plugin hls-retrie-plugin - hls-splice-plugin hls-stylish-haskell-plugin hls-tactics-plugin lsp + hls-hlint-plugin hls-module-name-plugin hls-ormolu-plugin + hls-plugin-api hls-pragmas-plugin hls-qualify-imported-names-plugin + hls-refactor-plugin hls-refine-imports-plugin hls-rename-plugin + hls-retrie-plugin hls-stylish-haskell-plugin lsp optparse-applicative optparse-simple prettyprinter process safe-exceptions sqlite-simple text unordered-containers ]; @@ -129223,7 +128535,6 @@ self: { description = "Haskell library for the Microsoft Language Server Protocol"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskell-lsp-client" = callPackage @@ -129265,6 +128576,8 @@ self: { ]; description = "Haskell library for the Microsoft Language Server Protocol, data types"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskell-menu" = callPackage @@ -130455,6 +129768,7 @@ self: { executableToolDepends = [ hspec-discover ]; description = "Haskell XMPP (eXtensible Message Passing Protocol, a.k.a. Jabber) library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "haskell-xmpp-io-test"; }) {}; @@ -131295,8 +130609,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Bitcoin & Bitcoin Cash library for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskoin-crypto" = callPackage @@ -131351,7 +130663,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "P2P library for Bitcoin and Bitcoin Cash"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "haskoin-protocol" = callPackage @@ -131482,7 +130793,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Data for Haskoin Store"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "haskoin-util" = callPackage @@ -131550,6 +130860,7 @@ self: { description = "Implementation of a Bitcoin SPV Wallet with BIP32 and multisig support"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskoon" = callPackage @@ -132056,7 +131367,6 @@ self: { description = "Haskus binary format manipulation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskus-system-build" = callPackage @@ -132076,6 +131386,7 @@ self: { ]; description = "Haskus system build tool"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "haskus-system-build"; }) {}; @@ -132099,6 +131410,7 @@ self: { ]; description = "Haskus utility modules"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "haskus-utils-compat" = callPackage @@ -132167,6 +131479,8 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq QuickCheck ]; description = "Variant and EADT"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskus-web" = callPackage @@ -132289,21 +131603,20 @@ self: { }) {}; "haspara" = callPackage - ({ mkDerivation, aeson, base, containers, doctest, exceptions - , hashable, megaparsec, mtl, refined, safe-decimal, scientific - , template-haskell, text, time + ({ mkDerivation, aeson, base, containers, data-default, doctest + , exceptions, hashable, hspec, megaparsec, mtl, refined + , safe-decimal, scientific, template-haskell, text, time }: mkDerivation { pname = "haspara"; - version = "0.0.0.5"; - sha256 = "1y1zgsr2ba8m8rjwias1xqx61p1g081pxxwaas14blq5ijcp9ivz"; + version = "0.0.0.8"; + sha256 = "1yvzzkv0hbki5a5rp6md2kllrslafb26lkz4i9hfydllxqgrm0is"; libraryHaskellDepends = [ - aeson base containers exceptions hashable megaparsec mtl refined - safe-decimal scientific template-haskell text time + aeson base containers data-default exceptions hashable megaparsec + mtl refined safe-decimal scientific template-haskell text time ]; testHaskellDepends = [ - aeson base containers doctest exceptions hashable megaparsec mtl - refined safe-decimal scientific template-haskell text time + base containers data-default doctest hspec time ]; description = "A library providing definitions to work with monetary values"; license = lib.licenses.mit; @@ -132321,6 +131634,7 @@ self: { description = "This package enables to write SPARQL queries to remote endpoints"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haspell" = callPackage @@ -132336,32 +131650,6 @@ self: { }) {inherit (pkgs) aspell;}; "hasql" = callPackage - ({ mkDerivation, attoparsec, base, bytestring - , bytestring-strict-builder, contravariant, contravariant-extras - , dlist, gauge, hashable, hashtables, mtl, postgresql-binary - , postgresql-libpq, profunctors, QuickCheck, quickcheck-instances - , rerebase, tasty, tasty-hunit, tasty-quickcheck, text - , text-builder, transformers, vector - }: - mkDerivation { - pname = "hasql"; - version = "1.5.1"; - sha256 = "1g9hbn9saf17a9jxjkm4bak7xbjgq0nf8khv5djfkyz1yxmw4l6p"; - libraryHaskellDepends = [ - attoparsec base bytestring bytestring-strict-builder contravariant - dlist hashable hashtables mtl postgresql-binary postgresql-libpq - profunctors text text-builder transformers vector - ]; - testHaskellDepends = [ - contravariant-extras QuickCheck quickcheck-instances rerebase tasty - tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ gauge rerebase ]; - description = "An efficient PostgreSQL driver with a flexible mapping API"; - license = lib.licenses.mit; - }) {}; - - "hasql_1_6_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring , bytestring-strict-builder, contravariant, contravariant-extras , dlist, gauge, hashable, hashtables, mtl, network-ip @@ -132372,8 +131660,8 @@ self: { }: mkDerivation { pname = "hasql"; - version = "1.6.2"; - sha256 = "1ph1di36lhhi2y542cc5mm0pprq1j6yb2i69bwms59173amh8gcx"; + version = "1.6.3"; + sha256 = "04d4pa248pffqsj032m69wkv11cn0mdfc21qfygk3dcb1yfh0nnj"; libraryHaskellDepends = [ aeson attoparsec base bytestring bytestring-strict-builder contravariant dlist hashable hashtables mtl network-ip @@ -132387,7 +131675,6 @@ self: { benchmarkHaskellDepends = [ gauge rerebase ]; description = "An efficient PostgreSQL driver with a flexible mapping API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-backend" = callPackage @@ -132481,26 +131768,6 @@ self: { }: mkDerivation { pname = "hasql-dynamic-statements"; - version = "0.3.1.1"; - sha256 = "1bc7l6l6ss9grgphnb0sks08v0wx0aalja4rkjzp49p5m6g82rc6"; - libraryHaskellDepends = [ - base bytestring containers hasql hasql-implicits ptr - ]; - testHaskellDepends = [ - hasql QuickCheck quickcheck-instances rerebase tasty tasty-hunit - tasty-quickcheck - ]; - description = "Toolkit for constructing Hasql statements dynamically"; - license = lib.licenses.mit; - }) {}; - - "hasql-dynamic-statements_0_3_1_2" = callPackage - ({ mkDerivation, base, bytestring, containers, hasql - , hasql-implicits, ptr, QuickCheck, quickcheck-instances, rerebase - , tasty, tasty-hunit, tasty-quickcheck - }: - mkDerivation { - pname = "hasql-dynamic-statements"; version = "0.3.1.2"; sha256 = "165s21mw1j38xpzrqpg5nbgfa3gc9qw88b80d8cfdxdiyghn79hq"; libraryHaskellDepends = [ @@ -132512,7 +131779,6 @@ self: { ]; description = "Toolkit for constructing Hasql statements dynamically"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-explain-tests" = callPackage @@ -132589,6 +131855,8 @@ self: { ]; description = "QuasiQuoter that supports expression interpolation for hasql"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasql-migration" = callPackage @@ -132637,21 +131905,6 @@ self: { }: mkDerivation { pname = "hasql-optparse-applicative"; - version = "0.3.0.9"; - sha256 = "1m4z82l3ip50ly160ccjl46npxp1170knaf5acjdwhirsc6c3qpd"; - libraryHaskellDepends = [ - base-prelude hasql hasql-pool optparse-applicative - ]; - description = "\"optparse-applicative\" parsers for \"hasql\""; - license = lib.licenses.mit; - }) {}; - - "hasql-optparse-applicative_0_5" = callPackage - ({ mkDerivation, base-prelude, hasql, hasql-pool - , optparse-applicative - }: - mkDerivation { - pname = "hasql-optparse-applicative"; version = "0.5"; sha256 = "1bc7vknc6kq8ljbzf0hpqaps6jp1wrggx2kx4fvvqmw90z83vz28"; libraryHaskellDepends = [ @@ -132659,7 +131912,6 @@ self: { ]; description = "\"optparse-applicative\" parsers for \"hasql\""; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-pipes" = callPackage @@ -132678,18 +131930,6 @@ self: { }) {}; "hasql-pool" = callPackage - ({ mkDerivation, base-prelude, hasql, hspec, resource-pool, time }: - mkDerivation { - pname = "hasql-pool"; - version = "0.5.2.2"; - sha256 = "0sr8ifvkyd5g7ajaqd7bbqgfpnpkazv7fbq5ix07h94kdf1idqq5"; - libraryHaskellDepends = [ base-prelude hasql resource-pool time ]; - testHaskellDepends = [ base-prelude hasql hspec ]; - description = "A pool of connections for Hasql"; - license = lib.licenses.mit; - }) {}; - - "hasql-pool_0_8_0_6" = callPackage ({ mkDerivation, async, base, hasql, hspec, rerebase, stm , transformers }: @@ -132701,7 +131941,6 @@ self: { testHaskellDepends = [ async hasql hspec rerebase stm ]; description = "Pool of connections for Hasql"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-postgres" = callPackage @@ -132852,6 +132091,7 @@ self: { description = "Stream Hasql queries"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasql-streams-example" = callPackage @@ -132878,7 +132118,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "hasql-streaming"; - broken = true; }) {}; "hasql-streams-pipes" = callPackage @@ -132939,8 +132178,8 @@ self: { }: mkDerivation { pname = "hasql-th"; - version = "0.4.0.17"; - sha256 = "1s4ra8i4az6kik4ahfg3h0rzyz54fifn0dkabfpfxalg1ap5y7ic"; + version = "0.4.0.18"; + sha256 = "0z88skdk0i6rnwdqpy06yrhandaldll468kbkd4ilcf7fbwwk06v"; libraryHaskellDepends = [ base bytestring containers contravariant foldl hasql postgresql-syntax template-haskell template-haskell-compat-v0208 @@ -132957,24 +132196,6 @@ self: { }: mkDerivation { pname = "hasql-transaction"; - version = "1.0.1.1"; - sha256 = "0ajk7g9sk83sig2bkfajxpwasqrswxr0f82mxzwfy9j08z3ks235"; - libraryHaskellDepends = [ - base bytestring bytestring-tree-builder contravariant - contravariant-extras hasql mtl transformers - ]; - testHaskellDepends = [ async contravariant-extras hasql rerebase ]; - description = "Composable abstraction over retryable transactions for Hasql"; - license = lib.licenses.mit; - }) {}; - - "hasql-transaction_1_0_1_2" = callPackage - ({ mkDerivation, async, base, bytestring, bytestring-tree-builder - , contravariant, contravariant-extras, hasql, mtl, rerebase - , transformers - }: - mkDerivation { - pname = "hasql-transaction"; version = "1.0.1.2"; sha256 = "0wqvxjrjgrmnbbassayyixa4sa5qw5iwwcrh5yz65dw20qf7m9rs"; libraryHaskellDepends = [ @@ -132984,7 +132205,6 @@ self: { testHaskellDepends = [ async contravariant-extras hasql rerebase ]; description = "Composable abstraction over retryable transactions for Hasql"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-transaction-io" = callPackage @@ -133001,8 +132221,6 @@ self: { ]; description = "Perform IO actions during transactions for Hasql"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hasql-url" = callPackage @@ -133019,6 +132237,8 @@ self: { testHaskellDepends = [ base hasql tasty tasty-quickcheck ]; description = "Parse PostgreSQL connection URI into Hasql.Connection Settings"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasqlator-mysql" = callPackage @@ -133582,6 +132802,8 @@ self: { ]; description = "A Haskell library for efficient, concurrent, and concise data access"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haxl-amazonka" = callPackage @@ -133622,7 +132844,6 @@ self: { description = "An example Haxl data source for accessing the Facebook Graph API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haxparse" = callPackage @@ -133760,7 +132981,9 @@ self: { description = "A command line tool to compute BLAKE3 hashes"; license = lib.licenses.agpl3Only; badPlatforms = [ "aarch64-linux" ]; + hydraPlatforms = lib.platforms.none; mainProgram = "hb3sum"; + broken = true; }) {}; "hback" = callPackage @@ -134083,8 +133306,8 @@ self: { ({ mkDerivation, base, containers, indexed-traversable }: mkDerivation { pname = "hcdt"; - version = "0.1.0.3"; - sha256 = "0km3qh4h0iy1x09qvi112y8jj2vqln6yraqyqd1yls3xn0q1ga25"; + version = "0.1.0.5"; + sha256 = "18hd8x7g615cgafgni27x914kqvashdicd1alaj02mha4jl0380a"; libraryHaskellDepends = [ base containers indexed-traversable ]; description = "2d Delaunay triangulation"; license = lib.licenses.bsd3; @@ -134253,6 +133476,8 @@ self: { ]; description = "An implementation of the Consistent Overhead Byte Stuffing algorithm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hcom" = callPackage @@ -134590,7 +133815,6 @@ self: { description = "HDF: Uniform Rate Audio Signal Processing in Haskell"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hdf5" = callPackage @@ -134683,7 +133907,6 @@ self: { description = "Server-side HTTP Digest (RFC2617) in the CGI monad"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hdirect" = callPackage @@ -134936,7 +134159,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "License Header Manager"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "headroom"; + broken = true; }) {}; "heap" = callPackage @@ -135306,7 +134531,7 @@ self: { }) {}; "hedgehog" = callPackage - ({ mkDerivation, ansi-terminal, async, base, bytestring + ({ mkDerivation, ansi-terminal, async, barbies, base, bytestring , concurrent-output, containers, deepseq, directory, erf , exceptions, lifted-async, mmorph, monad-control, mtl, pretty-show , primitive, random, resourcet, stm, template-haskell, text, time @@ -135314,15 +134539,14 @@ self: { }: mkDerivation { pname = "hedgehog"; - version = "1.0.5"; - sha256 = "1qsqs8lmxa3wmw228cwi98vvvh9hqbc9d43i1sy2c9igw9xlhfi6"; - revision = "2"; - editedCabalFile = "1p6vixwflgz2y1fc94kqxiv8s5jvq63xhp56cqwpw2s7d7g5chx1"; + version = "1.1.2"; + sha256 = "0dbk75hk6hqpzkjdlpw3s63qhm42kqigij33p321by6xndb59jg1"; libraryHaskellDepends = [ - ansi-terminal async base bytestring concurrent-output containers - deepseq directory erf exceptions lifted-async mmorph monad-control - mtl pretty-show primitive random resourcet stm template-haskell - text time transformers transformers-base wl-pprint-annotated + ansi-terminal async barbies base bytestring concurrent-output + containers deepseq directory erf exceptions lifted-async mmorph + monad-control mtl pretty-show primitive random resourcet stm + template-haskell text time transformers transformers-base + wl-pprint-annotated ]; testHaskellDepends = [ base containers mmorph mtl pretty-show text transformers @@ -135410,6 +134634,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "hedgehog-classes_0_2_5_4" = callPackage + ({ mkDerivation, aeson, base, binary, comonad, containers, hedgehog + , pretty-show, primitive, semirings, silently, transformers, vector + , wl-pprint-annotated + }: + mkDerivation { + pname = "hedgehog-classes"; + version = "0.2.5.4"; + sha256 = "0z9ik5asddc2pnz430jsi1pyahkh6jy36ng0vwm7ywcq7cvhcvlz"; + libraryHaskellDepends = [ + aeson base binary comonad containers hedgehog pretty-show primitive + semirings silently transformers vector wl-pprint-annotated + ]; + testHaskellDepends = [ + aeson base binary comonad containers hedgehog vector + ]; + description = "Hedgehog will eat your typeclass bugs"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "hedgehog-corpus" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -135463,6 +134708,8 @@ self: { ]; description = "Customizable Gen for ADT using Generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hedgehog-gen-json" = callPackage @@ -135531,8 +134778,6 @@ self: { libraryHaskellDepends = [ base hedgehog lens ]; description = "Hedgehog properties for lens laws"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hedgehog-optics" = callPackage @@ -135790,8 +135035,8 @@ self: { }: mkDerivation { pname = "hegg"; - version = "0.2.0.0"; - sha256 = "124rdj3lmssn57gy3nffinyg1p03wd3w672v7l2aa8gzrpan20cg"; + version = "0.3.0.0"; + sha256 = "08hprlz70vxv759fr15hb95p7fj6qmnahjxvalj3db9rw5xqs4ia"; libraryHaskellDepends = [ base containers transformers ]; testHaskellDepends = [ base containers deriving-compat tasty tasty-hunit tasty-quickcheck @@ -135856,39 +135101,38 @@ self: { ({ mkDerivation, aeson, attoparsec, base, bifunctors, blaze-builder , blaze-html, bytestring, containers, criterion , criterion-measurement, directory, directory-tree, dlist, filepath - , hashable, HUnit, lens, lifted-base, map-syntax, monad-control - , mtl, process, QuickCheck, random, statistics, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, time - , transformers, transformers-base, unordered-containers, vector - , xmlhtml + , hashable, HUnit, indexed-traversable, lens, lifted-base + , map-syntax, monad-control, mtl, process, QuickCheck, random + , statistics, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, time, transformers + , transformers-base, unordered-containers, vector, xmlhtml }: mkDerivation { pname = "heist"; - version = "1.1.0.1"; - sha256 = "1j4h9fwny4hl2m5lgsd257lvm9057fb0hmnaqjw8a9k4hyx7hmqq"; - revision = "4"; - editedCabalFile = "1jwdn5l0iwcrbramfs6h60w0i6hgp2ixii89db8b0xvcbyb8h4hj"; + version = "1.1.1.0"; + sha256 = "17ba0jmzs4wk4303ydcr1p2k2kcjfs11mrhlglaz40z61z3vm1yl"; libraryHaskellDepends = [ aeson attoparsec base blaze-builder blaze-html bytestring containers directory directory-tree dlist filepath hashable - lifted-base map-syntax monad-control mtl process random text time - transformers transformers-base unordered-containers vector xmlhtml + indexed-traversable lifted-base map-syntax monad-control mtl + process random text time transformers transformers-base + unordered-containers vector xmlhtml ]; testHaskellDepends = [ aeson attoparsec base bifunctors blaze-builder blaze-html bytestring containers directory directory-tree dlist filepath - hashable HUnit lens lifted-base map-syntax monad-control mtl - process QuickCheck random test-framework test-framework-hunit - test-framework-quickcheck2 text time transformers transformers-base - unordered-containers vector xmlhtml + hashable HUnit indexed-traversable lens lifted-base map-syntax + monad-control mtl process QuickCheck random test-framework + test-framework-hunit test-framework-quickcheck2 text time + transformers transformers-base unordered-containers vector xmlhtml ]; benchmarkHaskellDepends = [ aeson attoparsec base blaze-builder blaze-html bytestring containers criterion criterion-measurement directory directory-tree - dlist filepath hashable HUnit lifted-base map-syntax monad-control - mtl process random statistics test-framework test-framework-hunit - text time transformers transformers-base unordered-containers - vector xmlhtml + dlist filepath hashable HUnit indexed-traversable lifted-base + map-syntax monad-control mtl process random statistics + test-framework test-framework-hunit text time transformers + transformers-base unordered-containers vector xmlhtml ]; description = "An Haskell template system supporting both HTML5 and XML"; license = lib.licenses.bsd3; @@ -135909,6 +135153,7 @@ self: { description = "Use JSON directly from Heist templates"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "heist-async" = callPackage @@ -135965,19 +135210,21 @@ self: { ]; description = "An Haskell template system supporting both HTML5 and XML"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "heist-extra" = callPackage - ({ mkDerivation, base, data-default, filepath, heist-emanote - , map-syntax, mtl, pandoc-types, relude, xmlhtml + ({ mkDerivation, base, data-default, filepath, heist, map-syntax + , mtl, pandoc-types, relude, xmlhtml }: mkDerivation { pname = "heist-extra"; - version = "0.1.0.0"; - sha256 = "175bch1045r69xqzaxh3fhlii2yn5wcwpifk0m5qw9520pbrg4rs"; + version = "0.2.0.0"; + sha256 = "0rjlnj6ja7wfck1cpkfl9hh17kn0ghal8g4j8dh2dfzm6bnprqmk"; libraryHaskellDepends = [ - base data-default filepath heist-emanote map-syntax mtl - pandoc-types relude xmlhtml + base data-default filepath heist map-syntax mtl pandoc-types relude + xmlhtml ]; description = "Extra heist functionality"; license = lib.licenses.mit; @@ -136191,7 +135438,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hell"; - broken = true; }) {}; "hellage" = callPackage @@ -136468,8 +135714,8 @@ self: { }: mkDerivation { pname = "hercules-ci-agent"; - version = "0.9.7"; - sha256 = "1pgzgmjc025n9if2hq84i4d9syrz7fskzvyy5ilz4h49vqnjngcq"; + version = "0.9.9"; + sha256 = "1havsghzsbicixb8cya0v1694l7r9n2frnmy297ar3chblfj8hgl"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -136555,8 +135801,8 @@ self: { }: mkDerivation { pname = "hercules-ci-api-agent"; - version = "0.4.5.0"; - sha256 = "1y6j7qbs1r78kd020j1w31xpl1alkwrgp6isigam86dzyngfw2wv"; + version = "0.4.6.0"; + sha256 = "0bdmz7c4ln2bbss5wa4q8k9wha47knnp9d9n3w9kj8p7wzhc2kly"; libraryHaskellDepends = [ aeson base base64-bytestring-type bytestring containers cookie deepseq exceptions hashable hercules-ci-api-core http-api-data @@ -136564,10 +135810,10 @@ self: { swagger2 text time unordered-containers uuid vector ]; testHaskellDepends = [ - aeson base bytestring containers cookie exceptions hashable hspec - http-api-data http-media lens memory network-uri profunctors - QuickCheck quickcheck-classes servant servant-auth string-conv - swagger2 text time uuid vector + aeson base bytestring containers cookie exceptions hashable + hercules-ci-api-core hspec http-api-data http-media lens memory + network-uri profunctors QuickCheck quickcheck-classes servant + servant-auth string-conv swagger2 text time uuid vector ]; description = "API definition for Hercules CI Agent to talk to hercules-ci.com or Hercules CI Enterprise"; license = lib.licenses.asl20; @@ -136583,8 +135829,8 @@ self: { }: mkDerivation { pname = "hercules-ci-api-core"; - version = "0.1.4.0"; - sha256 = "05bchaq46928d8mlp9r3h4l4lb21758dkpws8c494vbbgkss6mg1"; + version = "0.1.5.0"; + sha256 = "1f5fxivyy5fkchr5b8na2fxrmp4p7av61a28grsp7n0ndik1lfgd"; libraryHaskellDepends = [ aeson base bytestring containers cookie deepseq exceptions hashable http-api-data http-media katip lens lifted-base memory @@ -136613,8 +135859,8 @@ self: { }: mkDerivation { pname = "hercules-ci-cli"; - version = "0.3.2"; - sha256 = "1lr7ai19zq55y1ib7133llajpx4n041xv6gv797d1ibk03qj69gc"; + version = "0.3.4"; + sha256 = "1n79ka1bn99vqa8i14f94zs4b78vl2pidx0h8nrdvg1xclqa5fka"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -136653,8 +135899,8 @@ self: { }: mkDerivation { pname = "hercules-ci-cnix-expr"; - version = "0.3.3.0"; - sha256 = "03c579y14cnynnrgfj2p41q65aplhr5ayc8i38yzvm96i5d6w6yq"; + version = "0.3.4.0"; + sha256 = "1mszhnd2z0qy58x13w5nbw3ymqvd8vf0d4kh3bprrjlbll0rxmgn"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal cabal-pkg-config-version-hook ]; libraryHaskellDepends = [ @@ -136683,8 +135929,8 @@ self: { }: mkDerivation { pname = "hercules-ci-cnix-store"; - version = "0.3.3.1"; - sha256 = "12dar9i4kbils7f03almhlarhjysgh2zqsq24xqrsz6fwdcdn5v6"; + version = "0.3.3.2"; + sha256 = "11z6k9r8z2bvf0wly6b0fr0s3svbrf1rgz0v2in33jq6739lci92"; setupHaskellDepends = [ base Cabal cabal-pkg-config-version-hook ]; libraryHaskellDepends = [ base bytestring conduit containers inline-c inline-c-cpp protolude @@ -137159,6 +136405,7 @@ self: { testSystemDepends = [ secp256k1 ]; description = "Ethereum virtual machine evaluator"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "hevm"; maintainers = [ lib.maintainers.arturcygan ]; }) {inherit (pkgs) libff; inherit (pkgs) secp256k1;}; @@ -137216,27 +136463,12 @@ self: { ({ mkDerivation, base, base16-bytestring, bytestring, text }: mkDerivation { pname = "hex-text"; - version = "0.1.0.6"; - sha256 = "1a5ccvbj7asbx92f4309qfwwih8ffnfi5kkahdn6dp444xa374r7"; - revision = "2"; - editedCabalFile = "00bwakiri9vbn05zi7alwhl5rdg13ls3pydcrgc0q4v8banrp868"; - libraryHaskellDepends = [ base base16-bytestring bytestring text ]; - testHaskellDepends = [ base base16-bytestring bytestring text ]; - description = "ByteString-Text hexidecimal conversions"; - license = lib.licenses.mit; - }) {}; - - "hex-text_0_1_0_7" = callPackage - ({ mkDerivation, base, base16-bytestring, bytestring, text }: - mkDerivation { - pname = "hex-text"; version = "0.1.0.7"; sha256 = "1xyyr6570dbp6mgarz8v56s9kg4pfzk1dc10nw0gg51j6xl1c2zn"; libraryHaskellDepends = [ base base16-bytestring bytestring text ]; testHaskellDepends = [ base base16-bytestring bytestring text ]; description = "ByteString-Text hexidecimal conversions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hexchat" = callPackage @@ -137635,8 +136867,6 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell bindings for the Keystone assembler framework"; license = lib.licenses.gpl2Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) keystone;}; "heyting-algebras" = callPackage @@ -137658,6 +136888,8 @@ self: { ]; description = "Heyting and Boolean algebras"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hfann" = callPackage @@ -137781,7 +137013,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hfoil"; - broken = true; }) {}; "hformat" = callPackage @@ -138138,9 +137369,7 @@ self: { ]; description = "Bindings to libintl.h (gettext, bindtextdomain)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hgettext"; - broken = true; }) {}; "hgis" = callPackage @@ -138523,6 +137752,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Interface to hidapi library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) hidapi;}; "hid-examples" = callPackage @@ -138606,6 +137837,8 @@ self: { pname = "hie-bios"; version = "0.11.0"; sha256 = "1vqfbyi1jlgzrvl9njgdhvj1hp0b7rl4xpchyldpf179151vy24p"; + revision = "3"; + editedCabalFile = "0axmy522cfk92c5hwrqhkqswlxlm26m821b64rnh32666sxfdhy1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -138946,6 +138179,8 @@ self: { ]; description = "A rich monadic API for working with leveldb databases"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "higherorder" = callPackage @@ -139147,7 +138382,9 @@ self: { ]; description = "Generate STL models from SRTM elevation data"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hills"; + broken = true; }) {}; "himerge" = callPackage @@ -139490,8 +138727,6 @@ self: { ]; description = "inotify conduit sources"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hinquire" = callPackage @@ -139568,6 +138803,7 @@ self: { description = "A server process that runs hint"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hinter" = callPackage @@ -140447,26 +139683,6 @@ self: { }: mkDerivation { pname = "hkgr"; - version = "0.3"; - sha256 = "1w8ww2dkskdfs0lh6wbn5byhnrf6mwih7n5yp81fr6awdc0k1qrm"; - isLibrary = false; - isExecutable = true; - enableSeparateDataOutput = true; - executableHaskellDepends = [ - base bytestring directory extra filepath simple-cabal - simple-cmd-args typed-process xdg-basedir - ]; - description = "Simple Hackage release workflow for package maintainers"; - license = lib.licenses.gpl3Only; - mainProgram = "hkgr"; - }) {}; - - "hkgr_0_4_2" = callPackage - ({ mkDerivation, base, bytestring, directory, extra, filepath - , simple-cabal, simple-cmd-args, typed-process, xdg-basedir - }: - mkDerivation { - pname = "hkgr"; version = "0.4.2"; sha256 = "0ssh8wylalmgicpcixilvx3p46jf8miqx2q0gz9yjhxa54c721ab"; isLibrary = false; @@ -140478,7 +139694,6 @@ self: { ]; description = "Simple Hackage release workflow for package maintainers"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "hkgr"; }) {}; @@ -140586,49 +139801,6 @@ self: { }) {}; "hledger" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs - , containers, data-default, Decimal, Diff, directory, extra - , filepath, githash, hashable, haskeline, hledger-lib, lucid - , math-functions, megaparsec, microlens, mtl, process, regex-tdfa - , safe, shakespeare, split, tabular, tasty, temporary, terminfo - , text, time, timeit, transformers, unordered-containers - , utf8-string, utility-ht, wizards - }: - mkDerivation { - pname = "hledger"; - version = "1.25"; - sha256 = "0dmzmvkg8gk8rwbhvc4v4ch12i1pqvd91jx3z5c0plmx49f8q65k"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers data-default - Decimal Diff directory extra filepath githash hashable haskeline - hledger-lib lucid math-functions megaparsec microlens mtl process - regex-tdfa safe shakespeare split tabular tasty temporary terminfo - text time timeit transformers unordered-containers utf8-string - utility-ht wizards - ]; - executableHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers data-default - Decimal directory extra filepath githash haskeline hledger-lib - math-functions megaparsec microlens mtl process regex-tdfa safe - shakespeare split tabular tasty temporary terminfo text time timeit - transformers unordered-containers utf8-string utility-ht wizards - ]; - testHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers data-default - Decimal directory extra filepath githash haskeline hledger-lib - math-functions megaparsec microlens mtl process regex-tdfa safe - shakespeare split tabular tasty temporary terminfo text time timeit - transformers unordered-containers utf8-string utility-ht wizards - ]; - description = "Command-line interface for the hledger accounting system"; - license = lib.licenses.gpl3Only; - mainProgram = "hledger"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "hledger_1_27_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, breakpoint, bytestring , cmdargs, containers, data-default, Decimal, Diff, directory , extra, filepath, githash, hashable, haskeline, hledger-lib, lucid @@ -140669,9 +139841,56 @@ self: { ]; description = "Command-line interface for the hledger accounting system"; license = lib.licenses.gpl3Only; + mainProgram = "hledger"; + maintainers = [ + lib.maintainers.maralorn lib.maintainers.sternenseemann + ]; + }) {}; + + "hledger_1_28" = callPackage + ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs + , containers, data-default, Decimal, Diff, directory, extra + , filepath, githash, hashable, haskeline, hledger-lib, lucid + , math-functions, megaparsec, microlens, mtl, process, regex-tdfa + , safe, shakespeare, split, tabular, tasty, temporary, terminfo + , text, time, timeit, transformers, unordered-containers + , utf8-string, utility-ht, wizards + }: + mkDerivation { + pname = "hledger"; + version = "1.28"; + sha256 = "0lagm7wk0k8jyk6kqggw7qka0jigqzjyqrrl4pr6cm0wd7x34cd8"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal base bytestring cmdargs containers data-default + Decimal Diff directory extra filepath githash hashable haskeline + hledger-lib lucid math-functions megaparsec microlens mtl process + regex-tdfa safe shakespeare split tabular tasty temporary terminfo + text time timeit transformers unordered-containers utf8-string + utility-ht wizards + ]; + executableHaskellDepends = [ + aeson ansi-terminal base bytestring cmdargs containers data-default + Decimal directory extra filepath githash haskeline hledger-lib + math-functions megaparsec microlens mtl process regex-tdfa safe + shakespeare split tabular tasty temporary terminfo text time timeit + transformers unordered-containers utf8-string utility-ht wizards + ]; + testHaskellDepends = [ + aeson ansi-terminal base bytestring cmdargs containers data-default + Decimal directory extra filepath githash haskeline hledger-lib + math-functions megaparsec microlens mtl process regex-tdfa safe + shakespeare split tabular tasty temporary terminfo text time timeit + transformers unordered-containers utf8-string utility-ht wizards + ]; + description = "Command-line interface for the hledger accounting system"; + license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.maralorn lib.maintainers.sternenseemann + ]; }) {}; "hledger-api" = callPackage @@ -140698,7 +139917,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-api"; - broken = true; }) {}; "hledger-chart" = callPackage @@ -140775,8 +139993,8 @@ self: { pname = "hledger-iadd"; version = "1.3.17"; sha256 = "1b3qz5vm8db6gsdakg8nf3qc6rp7mlh3zpkzvhi80pqm3jzdbjph"; - revision = "2"; - editedCabalFile = "1npd15zy812mx83xbgwgxv7sdvv5cmznbw75y8inafmxk2jj1wn8"; + revision = "3"; + editedCabalFile = "0xb476i2xn0ncfqx65qy4vs0g2dchw5p0naxgz4zfmffrmyfsc92"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -140796,7 +140014,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "A terminal UI as drop-in replacement for hledger add"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hledger-iadd"; + broken = true; }) {}; "hledger-interest" = callPackage @@ -140804,26 +140024,6 @@ self: { }: mkDerivation { pname = "hledger-interest"; - version = "1.6.3"; - sha256 = "1r8iydl66k2j7xv1b465alf3h8mqwjfz13ffwsd50h0kscxjmxhg"; - revision = "2"; - editedCabalFile = "1hsd1r4j0737lkllxa3ivrbdcp3da2vr5fiakfhrw5fqsbi3p8rc"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - base Cabal Decimal hledger-lib mtl text time - ]; - description = "computes interest for a given account"; - license = lib.licenses.bsd3; - mainProgram = "hledger-interest"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "hledger-interest_1_6_4" = callPackage - ({ mkDerivation, base, Cabal, Decimal, hledger-lib, mtl, text, time - }: - mkDerivation { - pname = "hledger-interest"; version = "1.6.4"; sha256 = "1719sa7zxaa5amrqhkckn9ip5wzc2qbi8gn4f3l98a7sh77f9fym"; revision = "1"; @@ -140835,7 +140035,6 @@ self: { ]; description = "computes interest for a given account"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hledger-interest"; maintainers = [ lib.maintainers.peti ]; }) {}; @@ -140863,47 +140062,11 @@ self: { "hledger-lib" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array, base - , blaze-markup, bytestring, call-stack, cassava, cassava-megaparsec - , cmdargs, containers, data-default, Decimal, directory, doclayout - , extra, file-embed, filepath, Glob, hashtables, megaparsec - , microlens, microlens-th, mtl, parser-combinators, pretty-simple - , regex-tdfa, safe, tabular, tasty, tasty-hunit, template-haskell - , text, time, timeit, transformers, uglymemo, unordered-containers - , utf8-string - }: - mkDerivation { - pname = "hledger-lib"; - version = "1.25"; - sha256 = "06b9nkpkwbr14jgbc04635qd7b3s068jvdfkfiza2zb4yzhdzh1n"; - libraryHaskellDepends = [ - aeson aeson-pretty ansi-terminal array base blaze-markup bytestring - call-stack cassava cassava-megaparsec cmdargs containers - data-default Decimal directory doclayout extra file-embed filepath - Glob hashtables megaparsec microlens microlens-th mtl - parser-combinators pretty-simple regex-tdfa safe tabular tasty - tasty-hunit template-haskell text time timeit transformers uglymemo - unordered-containers utf8-string - ]; - testHaskellDepends = [ - aeson aeson-pretty ansi-terminal array base blaze-markup bytestring - call-stack cassava cassava-megaparsec cmdargs containers - data-default Decimal directory doclayout extra file-embed filepath - Glob hashtables megaparsec microlens microlens-th mtl - parser-combinators pretty-simple regex-tdfa safe tabular tasty - tasty-hunit template-haskell text time timeit transformers uglymemo - unordered-containers utf8-string - ]; - description = "A reusable library providing the core functionality of hledger"; - license = lib.licenses.gpl3Only; - }) {}; - - "hledger-lib_1_27_1" = callPackage - ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array, base , blaze-markup, breakpoint, bytestring, call-stack, cassava , cassava-megaparsec, cmdargs, containers, data-default, Decimal - , deepseq, directory, doclayout, extra, file-embed, filepath, Glob - , hashtables, megaparsec, microlens, microlens-th, mtl - , parser-combinators, pretty-simple, regex-tdfa, safe, tabular + , deepseq, directory, doclayout, doctest, extra, file-embed + , filepath, Glob, hashtables, megaparsec, microlens, microlens-th + , mtl, parser-combinators, pretty-simple, regex-tdfa, safe, tabular , tasty, tasty-hunit, template-haskell, text, time, timeit , transformers, uglymemo, unordered-containers, utf8-string }: @@ -140923,12 +140086,48 @@ self: { testHaskellDepends = [ aeson aeson-pretty ansi-terminal array base blaze-markup breakpoint bytestring call-stack cassava cassava-megaparsec cmdargs containers + data-default Decimal deepseq directory doclayout doctest extra + file-embed filepath Glob hashtables megaparsec microlens + microlens-th mtl parser-combinators pretty-simple regex-tdfa safe + tabular tasty tasty-hunit template-haskell text time timeit + transformers uglymemo unordered-containers utf8-string + ]; + description = "A reusable library providing the core functionality of hledger"; + license = lib.licenses.gpl3Only; + }) {}; + + "hledger-lib_1_28" = callPackage + ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array, base + , blaze-markup, bytestring, call-stack, cassava, cassava-megaparsec + , cmdargs, containers, data-default, Decimal, deepseq, directory + , doclayout, doctest, extra, file-embed, filepath, Glob, hashtables + , megaparsec, microlens, microlens-th, mtl, parser-combinators + , pretty-simple, regex-tdfa, safe, tabular, tasty, tasty-hunit + , template-haskell, text, time, timeit, transformers, uglymemo + , unordered-containers, utf8-string + }: + mkDerivation { + pname = "hledger-lib"; + version = "1.28"; + sha256 = "098c36vx16xnjs27sn9h2794hyf7py5bhn1kaw8ira6akljgzh4k"; + libraryHaskellDepends = [ + aeson aeson-pretty ansi-terminal array base blaze-markup bytestring + call-stack cassava cassava-megaparsec cmdargs containers data-default Decimal deepseq directory doclayout extra file-embed filepath Glob hashtables megaparsec microlens microlens-th mtl parser-combinators pretty-simple regex-tdfa safe tabular tasty tasty-hunit template-haskell text time timeit transformers uglymemo unordered-containers utf8-string ]; + testHaskellDepends = [ + aeson aeson-pretty ansi-terminal array base blaze-markup bytestring + call-stack cassava cassava-megaparsec cmdargs containers + data-default Decimal deepseq directory doclayout doctest extra + file-embed filepath Glob hashtables megaparsec microlens + microlens-th mtl parser-combinators pretty-simple regex-tdfa safe + tabular tasty tasty-hunit template-haskell text time timeit + transformers uglymemo unordered-containers utf8-string + ]; description = "A reusable library providing the core functionality of hledger"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; @@ -140964,36 +140163,6 @@ self: { }: mkDerivation { pname = "hledger-stockquotes"; - version = "0.1.2.0"; - sha256 = "064q6qz6rrahk9ri5hr1y6n17nmd4l124xb3l8q5rvm81x3hzp3x"; - revision = "1"; - editedCabalFile = "1dbcvypi8kcrcy38wbvhaadhs2fwjw1kh3xzzq07ss30a7gg3k8y"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring containers hledger-lib req safe scientific - split text time unordered-containers - ]; - executableHaskellDepends = [ - aeson base bytestring cmdargs directory raw-strings-qq - safe-exceptions text time xdg-basedir yaml - ]; - testHaskellDepends = [ - base hedgehog tasty tasty-hedgehog tasty-hunit - ]; - description = "Generate HLedger Price Directives From Daily Stock Quotes"; - license = lib.licenses.bsd3; - mainProgram = "hledger-stockquotes"; - }) {}; - - "hledger-stockquotes_0_1_2_1" = callPackage - ({ mkDerivation, aeson, base, bytestring, cmdargs, containers - , directory, hedgehog, hledger-lib, raw-strings-qq, req, safe - , safe-exceptions, scientific, split, tasty, tasty-hedgehog - , tasty-hunit, text, time, unordered-containers, xdg-basedir, yaml - }: - mkDerivation { - pname = "hledger-stockquotes"; version = "0.1.2.1"; sha256 = "09h021dcpya8492kgyqkd2irxa10kwc9dgzk5xn7r121hl55jp50"; revision = "1"; @@ -141013,59 +140182,58 @@ self: { ]; description = "Generate HLedger Price Directives From Daily Stock Quotes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hledger-stockquotes"; }) {}; "hledger-ui" = callPackage - ({ mkDerivation, ansi-terminal, async, base, brick, cmdargs - , containers, data-default, directory, doclayout, extra, filepath - , fsnotify, hledger, hledger-lib, megaparsec, microlens - , microlens-platform, process, safe, split, text, text-zipper, time - , transformers, unix, vector, vty + ({ mkDerivation, ansi-terminal, async, base, breakpoint, brick + , cmdargs, containers, data-default, directory, doclayout, extra + , filepath, fsnotify, hledger, hledger-lib, megaparsec, microlens + , microlens-platform, mtl, process, safe, split, text, text-zipper + , time, transformers, unix, vector, vty }: mkDerivation { pname = "hledger-ui"; - version = "1.25"; - sha256 = "1sagm19anvs9b609s4rzlhjdjwd74ywbxf211j35ia5wslj8031x"; + version = "1.27.1"; + sha256 = "1srzlz0mdcp0259k0vsc8xkisd9l59s30j1k1x9bnsn179n8bi22"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - ansi-terminal async base brick cmdargs containers data-default - directory doclayout extra filepath fsnotify hledger hledger-lib - megaparsec microlens microlens-platform process safe split text - text-zipper time transformers unix vector vty + ansi-terminal async base breakpoint brick cmdargs containers + data-default directory doclayout extra filepath fsnotify hledger + hledger-lib megaparsec microlens microlens-platform mtl process + safe split text text-zipper time transformers unix vector vty ]; description = "Curses-style terminal interface for the hledger accounting system"; license = lib.licenses.gpl3Only; mainProgram = "hledger-ui"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.maralorn ]; }) {}; - "hledger-ui_1_27_1" = callPackage - ({ mkDerivation, ansi-terminal, async, base, breakpoint, brick - , cmdargs, containers, data-default, directory, doclayout, extra - , filepath, fsnotify, hledger, hledger-lib, megaparsec, microlens + "hledger-ui_1_28" = callPackage + ({ mkDerivation, ansi-terminal, async, base, brick, cmdargs + , containers, data-default, directory, doclayout, extra, filepath + , fsnotify, hledger, hledger-lib, megaparsec, microlens , microlens-platform, mtl, process, safe, split, text, text-zipper , time, transformers, unix, vector, vty }: mkDerivation { pname = "hledger-ui"; - version = "1.27.1"; - sha256 = "1srzlz0mdcp0259k0vsc8xkisd9l59s30j1k1x9bnsn179n8bi22"; + version = "1.28"; + sha256 = "04jq73ra4gv5q5lj0ivhrabkxkvp278c0sqyv6sa9sks0iwlgm3p"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - ansi-terminal async base breakpoint brick cmdargs containers - data-default directory doclayout extra filepath fsnotify hledger - hledger-lib megaparsec microlens microlens-platform mtl process - safe split text text-zipper time transformers unix vector vty + ansi-terminal async base brick cmdargs containers data-default + directory doclayout extra filepath fsnotify hledger hledger-lib + megaparsec microlens microlens-platform mtl process safe split text + text-zipper time transformers unix vector vty ]; description = "Curses-style terminal interface for the hledger accounting system"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-ui"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.maralorn ]; }) {}; "hledger-vty" = callPackage @@ -141090,23 +140258,23 @@ self: { "hledger-web" = callPackage ({ mkDerivation, aeson, base, base64, blaze-html, blaze-markup - , bytestring, case-insensitive, clientsession, cmdargs, conduit - , conduit-extra, containers, data-default, Decimal, directory - , extra, filepath, hjsmin, hledger, hledger-lib, hspec, http-client - , http-conduit, http-types, megaparsec, mtl, network, shakespeare - , template-haskell, text, time, transformers, unix-compat - , unordered-containers, utf8-string, wai, wai-cors, wai-extra - , wai-handler-launch, warp, yaml, yesod, yesod-core, yesod-form - , yesod-static, yesod-test + , breakpoint, bytestring, case-insensitive, clientsession, cmdargs + , conduit, conduit-extra, containers, data-default, Decimal + , directory, extra, filepath, hjsmin, hledger, hledger-lib, hspec + , http-client, http-conduit, http-types, megaparsec, mtl, network + , shakespeare, template-haskell, text, time, transformers + , unix-compat, unordered-containers, utf8-string, wai, wai-cors + , wai-extra, wai-handler-launch, warp, yaml, yesod, yesod-core + , yesod-form, yesod-static, yesod-test }: mkDerivation { pname = "hledger-web"; - version = "1.25"; - sha256 = "0bgy2whld4b5f3ahs0zbmrgh56i0drw5hv43wnb57qixcirhlf8g"; + version = "1.27.1"; + sha256 = "151dxci7dld8626dzw823sr3d9iaac92wfzbfcbdz4jh9f7n07wa"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base base64 blaze-html blaze-markup bytestring + aeson base base64 blaze-html blaze-markup breakpoint bytestring case-insensitive clientsession cmdargs conduit conduit-extra containers data-default Decimal directory extra filepath hjsmin hledger hledger-lib hspec http-client http-conduit http-types @@ -141115,35 +140283,35 @@ self: { wai-cors wai-extra wai-handler-launch warp yaml yesod yesod-core yesod-form yesod-static yesod-test ]; - executableHaskellDepends = [ base ]; + executableHaskellDepends = [ base breakpoint ]; testHaskellDepends = [ - base hledger hledger-lib hspec text yesod yesod-test + base breakpoint hledger hledger-lib hspec text yesod yesod-test ]; description = "Web-based user interface for the hledger accounting system"; license = lib.licenses.gpl3Only; mainProgram = "hledger-web"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.maralorn ]; }) {}; - "hledger-web_1_27_1" = callPackage + "hledger-web_1_28" = callPackage ({ mkDerivation, aeson, base, base64, blaze-html, blaze-markup - , breakpoint, bytestring, case-insensitive, clientsession, cmdargs - , conduit, conduit-extra, containers, data-default, Decimal - , directory, extra, filepath, hjsmin, hledger, hledger-lib, hspec - , http-client, http-conduit, http-types, megaparsec, mtl, network - , shakespeare, template-haskell, text, time, transformers - , unix-compat, unordered-containers, utf8-string, wai, wai-cors - , wai-extra, wai-handler-launch, warp, yaml, yesod, yesod-core - , yesod-form, yesod-static, yesod-test + , bytestring, case-insensitive, clientsession, cmdargs, conduit + , conduit-extra, containers, data-default, Decimal, directory + , extra, filepath, hjsmin, hledger, hledger-lib, hspec, http-client + , http-conduit, http-types, megaparsec, mtl, network, shakespeare + , template-haskell, text, time, transformers, unix-compat + , unordered-containers, utf8-string, wai, wai-cors, wai-extra + , wai-handler-launch, warp, yaml, yesod, yesod-core, yesod-form + , yesod-static, yesod-test }: mkDerivation { pname = "hledger-web"; - version = "1.27.1"; - sha256 = "151dxci7dld8626dzw823sr3d9iaac92wfzbfcbdz4jh9f7n07wa"; + version = "1.28"; + sha256 = "143340249wbcq4nsykk2d32xv9r89znzl8fr9yhaab68zlppfyh1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base base64 blaze-html blaze-markup breakpoint bytestring + aeson base base64 blaze-html blaze-markup bytestring case-insensitive clientsession cmdargs conduit conduit-extra containers data-default Decimal directory extra filepath hjsmin hledger hledger-lib hspec http-client http-conduit http-types @@ -141152,15 +140320,15 @@ self: { wai-cors wai-extra wai-handler-launch warp yaml yesod yesod-core yesod-form yesod-static yesod-test ]; - executableHaskellDepends = [ base breakpoint ]; + executableHaskellDepends = [ base ]; testHaskellDepends = [ - base breakpoint hledger hledger-lib hspec text yesod yesod-test + base hledger hledger-lib hspec text yesod yesod-test ]; description = "Web-based user interface for the hledger accounting system"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-web"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.maralorn ]; }) {}; "hlibBladeRF" = callPackage @@ -141282,35 +140450,8 @@ self: { "hlint" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs - , containers, cpphs, data-default, directory, extra, file-embed - , filepath, filepattern, ghc, ghc-boot, ghc-boot-th - , ghc-lib-parser-ex, hscolour, process, refact, text, transformers - , uniplate, unordered-containers, utf8-string, vector, yaml - }: - mkDerivation { - pname = "hlint"; - version = "3.3.6"; - sha256 = "0g4fnx0xlwny41dw01vxmfq9ibfwvpgf1cailj870k2wrbs2c9df"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers cpphs - data-default directory extra file-embed filepath filepattern ghc - ghc-boot ghc-boot-th ghc-lib-parser-ex hscolour process refact text - transformers uniplate unordered-containers utf8-string vector yaml - ]; - executableHaskellDepends = [ base ]; - description = "Source code suggestions"; - license = lib.licenses.bsd3; - mainProgram = "hlint"; - maintainers = [ lib.maintainers.maralorn ]; - }) {}; - - "hlint_3_4_1" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs , containers, cpphs, data-default, deriving-aeson, directory, extra - , file-embed, filepath, filepattern, ghc-lib-parser + , file-embed, filepath, filepattern, ghc, ghc-boot, ghc-boot-th , ghc-lib-parser-ex, hscolour, process, refact, text, transformers , uniplate, unordered-containers, utf8-string, vector, yaml }: @@ -141318,20 +140459,21 @@ self: { pname = "hlint"; version = "3.4.1"; sha256 = "0bkk03c9hacvfd73dk89g4r81b50g7pjgw5pavldali4qwss34cz"; + revision = "1"; + editedCabalFile = "1rdaffg5n179yfcn5zjwjb0bki09qy13gz2ijky455y9pbaz8yz9"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson ansi-terminal base bytestring cmdargs containers cpphs data-default deriving-aeson directory extra file-embed filepath - filepattern ghc-lib-parser ghc-lib-parser-ex hscolour process - refact text transformers uniplate unordered-containers utf8-string - vector yaml + filepattern ghc ghc-boot ghc-boot-th ghc-lib-parser-ex hscolour + process refact text transformers uniplate unordered-containers + utf8-string vector yaml ]; executableHaskellDepends = [ base ]; description = "Source code suggestions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hlint"; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -141455,13 +140597,14 @@ self: { pname = "hlrdb"; version = "0.4.0.0"; sha256 = "0cj2ff40n3v171xhvdips3als1f2x91ksxcqm7i570mwkdgbh1jr"; + revision = "1"; + editedCabalFile = "0ymp486cfw71vv2ydn9dgaixmq5dgcpy5x1jzibrld5cd14fs3gg"; libraryHaskellDepends = [ base base64 bytestring cryptonite hashable hedis hlrdb-core memory random store time unordered-containers zstd ]; description = "High-level Redis Database"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hlrdb-core" = callPackage @@ -141472,16 +140615,14 @@ self: { pname = "hlrdb-core"; version = "0.2.0.0"; sha256 = "0hkjll4v4kxc133b19kk9k4dkrbag6qdw24gwrhikrxlk666jsbl"; - revision = "1"; - editedCabalFile = "15pcz7f2alsyccz5id162ka4win9j6l98ygpgaycl6n57vcd3nsv"; + revision = "2"; + editedCabalFile = "1ql8dg9axrwrlz8wnxx7zkw8i5761qqlhkiy5frc3p5nqvxmf18b"; libraryHaskellDepends = [ base bytestring hashable hedis lens mtl profunctors random time unordered-containers ]; description = "High-level Redis Database Core API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hls" = callPackage @@ -141521,21 +140662,15 @@ self: { }) {}; "hls-brittany-plugin" = callPackage - ({ mkDerivation, base, brittany, czipwith, extra, filepath - , ghc-boot-th, ghc-exactprint, ghcide, hls-plugin-api - , hls-test-utils, lens, lsp-types, text, transformers - }: + ({ mkDerivation }: mkDerivation { pname = "hls-brittany-plugin"; version = "1.0.2.2"; sha256 = "0spr7qmqjkg0aqr16cp9pi5dqc10lskhqa6mpx49z0rifhk84hay"; - libraryHaskellDepends = [ - base brittany czipwith extra filepath ghc-boot-th ghc-exactprint - ghcide hls-plugin-api lens lsp-types text transformers - ]; - testHaskellDepends = [ base filepath hls-test-utils ]; description = "Integration with the Brittany code formatter"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-call-hierarchy-plugin" = callPackage @@ -141666,7 +140801,6 @@ self: { description = "Common utilities to interaction between ghc-exactprint and HLS plugins"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hls-explicit-fixity-plugin" = callPackage @@ -141793,21 +140927,15 @@ self: { }) {}; "hls-haddock-comments-plugin" = callPackage - ({ mkDerivation, base, containers, filepath, ghc, ghc-exactprint - , ghcide, hls-plugin-api, hls-refactor-plugin, hls-test-utils - , lsp-types, text, unordered-containers - }: + ({ mkDerivation }: mkDerivation { pname = "hls-haddock-comments-plugin"; version = "1.1.0.0"; sha256 = "0g0vwn5mcl4g1gxzg501mchxyyqwz83hjhqzai33qsmklcmnk5rc"; - libraryHaskellDepends = [ - base containers ghc ghc-exactprint ghcide hls-plugin-api - hls-refactor-plugin lsp-types text unordered-containers - ]; - testHaskellDepends = [ base filepath hls-test-utils text ]; description = "Haddock comments plugin for Haskell Language Server"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-hlint-plugin" = callPackage @@ -142070,6 +141198,8 @@ self: { testHaskellDepends = [ base filepath hls-test-utils text ]; description = "HLS Plugin to expand TemplateHaskell Splices and QuasiQuotes"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-stan-plugin" = callPackage @@ -142093,6 +141223,8 @@ self: { pname = "hls-stylish-haskell-plugin"; version = "1.0.1.1"; sha256 = "1k9bv31226zgy5aqxzzj7npph2ff0r5bx692q5n26lpil2ivq6sn"; + revision = "1"; + editedCabalFile = "1bpyfjnp6ahy3c56zg8llw74dq9qmmsqxc4l0867v99pdj827l55"; libraryHaskellDepends = [ base directory filepath ghc ghc-boot-th ghcide hls-plugin-api lsp-types stylish-haskell text @@ -142131,6 +141263,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "Wingman plugin for Haskell Language Server"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-test-utils" = callPackage @@ -142184,6 +141318,7 @@ self: { description = "Haskell LilyPond"; license = "GPL"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hmark" = callPackage @@ -142486,7 +141621,6 @@ self: { description = "hmatrix interface to sundials"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {sundials_arkode = null; sundials_cvode = null;}; "hmatrix-svdlibc" = callPackage @@ -142740,6 +141874,7 @@ self: { doHaddock = false; description = "Hidden Markov Models using LAPACK primitives"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hmp3" = callPackage @@ -142787,39 +141922,55 @@ self: { }) {inherit (pkgs) ncurses;}; "hmpfr" = callPackage - ({ mkDerivation, base, integer-gmp, mpfr }: + ({ mkDerivation, base, mpfr }: mkDerivation { pname = "hmpfr"; - version = "0.4.4"; - sha256 = "1x8n5245rm0brjl7vhcabazh1k69dcjdas70pnrnlkx26bqfpb9b"; + version = "0.4.5"; + sha256 = "1m2yfaacc4c6ak3dm9k9623kgz8mgqr922apzz79dx9yccpgn2ml"; enableSeparateDataOutput = true; - libraryHaskellDepends = [ base integer-gmp ]; + libraryHaskellDepends = [ base ]; librarySystemDepends = [ mpfr ]; description = "Haskell binding to the MPFR library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) mpfr;}; "hmt" = callPackage - ({ mkDerivation, aeson, array, base, bytestring, colour, containers - , data-ordlist, directory, fgl, filepath, hsc3, lazy-csv, logict - , multiset-comb, parsec, permutation, primes, process, random, safe - , split, text, time + ({ mkDerivation, array, base, bytestring, colour, containers + , data-memocombinators, data-ordlist, directory, fgl, filepath + , hmt-base, lazy-csv, logict, multiset-comb, parsec, primes + , process, random, safe, split, strict, text, time }: mkDerivation { pname = "hmt"; - version = "0.18"; - sha256 = "14c54z5zcg84nvq80yv3j3n6l7nha1l772vg3nsfsgy6fg430xdb"; + version = "0.20"; + sha256 = "0nz1k7xyyv51yjxlndwbqlg2vwrgxc7mj362nfclqfmly0ml0ynf"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson array base bytestring colour containers data-ordlist - directory fgl filepath hsc3 lazy-csv logict multiset-comb parsec - permutation primes process random safe split text time + array base bytestring colour containers data-memocombinators + data-ordlist directory fgl filepath hmt-base lazy-csv logict + multiset-comb parsec primes process random safe split strict text + time ]; description = "Haskell Music Theory"; - license = "GPL"; - hydraPlatforms = lib.platforms.none; + license = lib.licenses.gpl3Only; + }) {}; + + "hmt-base" = callPackage + ({ mkDerivation, array, base, bytestring, containers, data-ordlist + , directory, filepath, lazy-csv, monad-loops, process, random, safe + , split, text, time + }: + mkDerivation { + pname = "hmt-base"; + version = "0.20"; + sha256 = "1g28if5b4azpbj28s4p6n76i2bami5przmh9f2axaj3awpk1ly2r"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base bytestring containers data-ordlist directory filepath + lazy-csv monad-loops process random safe split text time + ]; + description = "Haskell Music Theory Base"; + license = lib.licenses.gpl3Only; }) {}; "hmt-diagrams" = callPackage @@ -142905,63 +142056,6 @@ self: { , scientific, semialign, serialise, some, split, syb, tasty , tasty-hedgehog, tasty-hunit, tasty-th, template-haskell, text , th-lift-instances, these, time, transformers, transformers-base - , unix, unordered-containers, vector, xml - }: - mkDerivation { - pname = "hnix"; - version = "0.14.0.8"; - sha256 = "101zbbrqs3fv1kxp428r97pq59fa6g0qkj1bqnsfchv4mxizg8jc"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson array base base16-bytestring binary bytestring comonad - containers cryptonite data-fix deepseq deriving-compat directory - exceptions filepath free gitrev hashable hashing hnix-store-core - hnix-store-remote http-client http-client-tls http-types - lens-family lens-family-core lens-family-th logict megaparsec - monad-control monadlist mtl neat-interpolation optparse-applicative - parser-combinators pretty-show prettyprinter process ref-tf - regex-tdfa relude scientific semialign serialise some split syb - template-haskell text th-lift-instances these time transformers - transformers-base unix unordered-containers vector xml - ]; - executableHaskellDepends = [ - aeson base comonad containers data-fix deepseq exceptions filepath - free haskeline optparse-applicative pretty-show prettyprinter - ref-tf relude repline serialise template-haskell time - ]; - testHaskellDepends = [ - base containers data-fix Diff directory exceptions filepath Glob - hedgehog megaparsec neat-interpolation optparse-applicative - pretty-show prettyprinter process relude serialise split tasty - tasty-hedgehog tasty-hunit tasty-th template-haskell time unix - ]; - benchmarkHaskellDepends = [ - base criterion data-fix exceptions filepath optparse-applicative - relude serialise template-haskell time - ]; - description = "Haskell implementation of the Nix language"; - license = lib.licenses.bsd3; - mainProgram = "hnix"; - maintainers = [ - lib.maintainers.Anton-Latukha lib.maintainers.sorki - ]; - }) {}; - - "hnix_0_16_0" = callPackage - ({ mkDerivation, aeson, array, base, base16-bytestring, binary - , bytestring, comonad, containers, criterion, cryptonite, data-fix - , deepseq, deriving-compat, Diff, directory, exceptions, filepath - , free, gitrev, Glob, hashable, hashing, haskeline, hedgehog - , hnix-store-core, hnix-store-remote, http-client, http-client-tls - , http-types, lens-family, lens-family-core, lens-family-th, logict - , megaparsec, monad-control, monadlist, mtl, neat-interpolation - , optparse-applicative, parser-combinators, pretty-show - , prettyprinter, process, ref-tf, regex-tdfa, relude, repline - , scientific, semialign, serialise, some, split, syb, tasty - , tasty-hedgehog, tasty-hunit, tasty-th, template-haskell, text - , th-lift-instances, these, time, transformers, transformers-base , unix-compat, unordered-containers, vector, xml }: mkDerivation { @@ -143000,14 +142094,13 @@ self: { ]; description = "Haskell implementation of the Nix language"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hnix"; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-core_0_5_0_0" = callPackage + "hnix-store-core" = callPackage ({ mkDerivation, algebraic-graphs, attoparsec, base , base16-bytestring, base64-bytestring, binary, bytestring, cereal , containers, cryptonite, directory, filepath, hashable, hspec @@ -143037,13 +142130,12 @@ self: { testToolDepends = [ tasty-discover ]; description = "Core effects for interacting with the Nix store"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-core" = callPackage + "hnix-store-core_0_6_0_0" = callPackage ({ mkDerivation, algebraic-graphs, attoparsec, base , base16-bytestring, base64-bytestring, binary, bytestring, cereal , containers, cryptonite, directory, filepath, hashable, hspec @@ -143072,12 +142164,13 @@ self: { testToolDepends = [ tasty-discover ]; description = "Core effects for interacting with the Nix store"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-remote_0_5_0_0" = callPackage + "hnix-store-remote" = callPackage ({ mkDerivation, attoparsec, base, binary, bytestring, containers , cryptonite, hnix-store-core, mtl, network, nix-derivation, text , time, unordered-containers @@ -143093,13 +142186,12 @@ self: { ]; description = "Remote hnix store"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-remote" = callPackage + "hnix-store-remote_0_6_0_0" = callPackage ({ mkDerivation, attoparsec, base, binary, bytestring, containers , cryptonite, hnix-store-core, mtl, network, nix-derivation, relude , text, time, unordered-containers @@ -143115,6 +142207,7 @@ self: { ]; description = "Remote hnix store"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; @@ -143249,56 +142342,86 @@ self: { }) {}; "hoauth2" = callPackage - ({ mkDerivation, aeson, base, binary, bytestring, containers - , data-default, exceptions, http-conduit, http-types, microlens - , text, transformers, uri-bytestring, uri-bytestring-aeson + ({ mkDerivation, aeson, base, base64, binary, bytestring + , containers, cryptonite, data-default, exceptions, http-conduit + , http-types, memory, microlens, text, transformers, uri-bytestring + , uri-bytestring-aeson }: mkDerivation { pname = "hoauth2"; - version = "2.3.0"; - sha256 = "10y4ik96h61msapqh0rjmb5vjv7kfky6z9iffsln046an59b759v"; + version = "2.6.0"; + sha256 = "1iag8dwza1cg8m436f2a3ar2281xjflslqfffgi9kz81jnvgs95i"; libraryHaskellDepends = [ - aeson base binary bytestring containers data-default exceptions - http-conduit http-types microlens text transformers uri-bytestring - uri-bytestring-aeson + aeson base base64 binary bytestring containers cryptonite + data-default exceptions http-conduit http-types memory microlens + text transformers uri-bytestring uri-bytestring-aeson ]; description = "Haskell OAuth2 authentication client"; - license = lib.licenses.bsd3; + license = lib.licenses.mit; }) {}; - "hoauth2_2_6_0" = callPackage + "hoauth2_2_7_0" = callPackage ({ mkDerivation, aeson, base, base64, binary, bytestring - , containers, cryptonite, data-default, exceptions, http-conduit - , http-types, memory, microlens, text, transformers, uri-bytestring - , uri-bytestring-aeson + , containers, cryptonite, data-default, exceptions, hspec + , hspec-discover, http-conduit, http-types, memory, microlens, text + , transformers, uri-bytestring, uri-bytestring-aeson }: mkDerivation { pname = "hoauth2"; - version = "2.6.0"; - sha256 = "1iag8dwza1cg8m436f2a3ar2281xjflslqfffgi9kz81jnvgs95i"; + version = "2.7.0"; + sha256 = "06ziq5xcxlxjr4yp175qvjq6g36r8ys98prgw3c8fsxrp3cpi0c5"; libraryHaskellDepends = [ aeson base base64 binary bytestring containers cryptonite data-default exceptions http-conduit http-types memory microlens text transformers uri-bytestring uri-bytestring-aeson ]; + testHaskellDepends = [ aeson base hspec ]; + testToolDepends = [ hspec-discover ]; description = "Haskell OAuth2 authentication client"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; }) {}; - "hoauth2-providers" = callPackage + "hoauth2-demo" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, data-default - , directory, hoauth2, http-conduit, http-types, mtl, parsec, text - , transformers, unordered-containers, uri-bytestring + , directory, hoauth2, hoauth2-providers, http-conduit, http-types + , jose-jwt, microlens, mustache, parsec, scotty, text, transformers + , unordered-containers, uri-bytestring, wai, wai-middleware-static + , warp + }: + mkDerivation { + pname = "hoauth2-demo"; + version = "1.6.0"; + sha256 = "1ypqbx19f25r1g3msj02h74zndl0bflc1y45gh4hfj3a0rz931gq"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ + aeson base bytestring containers data-default directory hoauth2 + hoauth2-providers http-conduit http-types jose-jwt microlens + mustache parsec scotty text transformers unordered-containers + uri-bytestring wai wai-middleware-static warp + ]; + description = "hoauth2 demo application"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "hoauth2-demo"; + }) {}; + + "hoauth2-providers" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, cryptonite + , data-default, directory, hoauth2, HsOpenSSL, http-conduit + , http-types, jose-jwt, mtl, parsec, text, time, transformers + , unordered-containers, uri-bytestring }: mkDerivation { pname = "hoauth2-providers"; - version = "0.1"; - sha256 = "1qasw49nyirajiijr7lfinacgx7kbzp76x52wdfvj9km4wc9xj77"; + version = "0.2"; + sha256 = "1d53byy7gfp02dily3xas0aav2a63s32maanl9ba3pbpzlic9lvp"; libraryHaskellDepends = [ - aeson base bytestring containers data-default directory hoauth2 - http-conduit http-types mtl parsec text transformers - unordered-containers uri-bytestring + aeson base bytestring containers cryptonite data-default directory + hoauth2 HsOpenSSL http-conduit http-types jose-jwt mtl parsec text + time transformers unordered-containers uri-bytestring ]; description = "OAuth2 Identity Providers"; license = lib.licenses.mit; @@ -143313,8 +142436,8 @@ self: { }: mkDerivation { pname = "hoauth2-providers-tutorial"; - version = "0.1"; - sha256 = "0zz99sipmgg1n61zx3mc69y3gvjijnslgwywd1dsw9hnqda10k4c"; + version = "0.2"; + sha256 = "1xb25d83qq8bmvx89nhzjcak406110j3id44y4ab6rqaccmgl5xf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -143335,8 +142458,8 @@ self: { }: mkDerivation { pname = "hoauth2-tutorial"; - version = "0.1.2"; - sha256 = "0wkyq213vmsdiwbqv5zi6kak978ayj61sf9r7ga8ry5asy5zjx64"; + version = "0.2"; + sha256 = "18mapdfx6ws3477bm63pcg4nvs1brsh75xc7jy3h4zyn99ci8ipv"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -143715,9 +142838,7 @@ self: { ]; description = "Higher order logic"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "hol-pkg"; - broken = true; }) {}; "hold-em" = callPackage @@ -143961,8 +143082,6 @@ self: { text unliftio unordered-containers uuid vector zlib ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "honi" = callPackage @@ -144480,6 +143599,8 @@ self: { executableToolDepends = [ alex happy ]; description = "hOpenPGP-based command-line tools"; license = lib.licenses.agpl3Plus; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hopenssl" = callPackage @@ -144597,6 +143718,8 @@ self: { ]; description = "C++ FFI generator - Code generator"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hoppy-runtime" = callPackage @@ -144613,7 +143736,6 @@ self: { description = "C++ FFI generator - Runtime support"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hoppy-std" = callPackage @@ -144628,6 +143750,7 @@ self: { ]; description = "C++ FFI generator - Standard library bindings"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "hops" = callPackage @@ -144717,6 +143840,51 @@ self: { broken = true; }) {}; + "horizon-gen-nix" = callPackage + ({ mkDerivation, base, Cabal-syntax, cabal2nix, containers, dhall + , directory, distribution-nixpkgs, either, horizon-spec + , language-nix, lens, optparse-applicative, path + , path-dhall-instance, pretty, silently, sydtest, text + }: + mkDerivation { + pname = "horizon-gen-nix"; + version = "0.3.1.0"; + sha256 = "1by0813yzhnzl188b7sdcy682arprhgahnivpqxkm1pfk2im92i9"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base Cabal-syntax cabal2nix containers dhall directory + distribution-nixpkgs either horizon-spec language-nix lens + optparse-applicative path path-dhall-instance pretty silently text + ]; + executableHaskellDepends = [ base directory path sydtest ]; + description = "Generate nix expressions from horizon-spec definitions"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "horizon-spec" = callPackage + ({ mkDerivation, base, containers, dhall, path, path-dhall-instance + , prettyprinter, sydtest, text + }: + mkDerivation { + pname = "horizon-spec"; + version = "0.4.1"; + sha256 = "1xr9x626fzw8bhrkzgv3r00cjsawav76jb68yznj1jlv91cvmxac"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers dhall path path-dhall-instance text + ]; + executableHaskellDepends = [ + base dhall prettyprinter sydtest text + ]; + description = "Horizon Stable Package Set Type Definitions"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "horizon-spec-tests"; + }) {}; + "horizontal-rule" = callPackage ({ mkDerivation, ansi-wl-pprint, base, HMock, optparse-applicative , tasty, tasty-hunit, terminal-size, text, time @@ -144775,6 +143943,24 @@ self: { license = lib.licenses.gpl3Only; }) {}; + "hosc_0_20" = callPackage + ({ mkDerivation, base, binary, blaze-builder, bytestring + , data-binary-ieee754, network, parsec, time, transformers + }: + mkDerivation { + pname = "hosc"; + version = "0.20"; + sha256 = "17pvv6rgl74ymq7pazxqia19smsga53kkg5h1i1dgfpikrmq7fz9"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base binary blaze-builder bytestring data-binary-ieee754 network + parsec time transformers + ]; + description = "Haskell Open Sound Control"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "hosc-json" = callPackage ({ mkDerivation, aeson, attoparsec, base, bifunctors, bytestring , hosc, json, text, transformers, unordered-containers, utf8-string @@ -144998,7 +144184,6 @@ self: { testHaskellDepends = [ base do-notation indexed ]; description = "Non-interactive proof assistant monad for first-order logic"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hp2any-core" = callPackage @@ -145108,8 +144293,10 @@ self: { }: mkDerivation { pname = "hpack"; - version = "0.34.7"; - sha256 = "0nzqpma4cxp3xw79i5pxgjynl5iq0dq0nrw8vczwpj373kyijd0h"; + version = "0.35.0"; + sha256 = "1cii4bdn4rm2l3yw9vsv4ygn61zmalaa282iqg9rihys90nvrgf6"; + revision = "1"; + editedCabalFile = "1x0rmra2fpfzmhhw090iila2drfdmb1y28ybypmgbi0asa1zl751"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -145137,7 +144324,7 @@ self: { mainProgram = "hpack"; }) {}; - "hpack_0_35_0" = callPackage + "hpack_0_35_1" = callPackage ({ mkDerivation, aeson, base, bifunctors, bytestring, Cabal , containers, cryptonite, deepseq, directory, filepath, Glob, hspec , hspec-discover, http-client, http-client-tls, http-types, HUnit @@ -145147,10 +144334,8 @@ self: { }: mkDerivation { pname = "hpack"; - version = "0.35.0"; - sha256 = "1cii4bdn4rm2l3yw9vsv4ygn61zmalaa282iqg9rihys90nvrgf6"; - revision = "1"; - editedCabalFile = "1x0rmra2fpfzmhhw090iila2drfdmb1y28ybypmgbi0asa1zl751"; + version = "0.35.1"; + sha256 = "1hpc6bwx94v943p73l12nnncbs656f2fn7q3hb4qs13xrxygzl4g"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -145215,36 +144400,6 @@ self: { "hpack-dhall" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal - , dhall, dhall-json, Diff, directory, filepath, hlint, hpack - , megaparsec, microlens, optparse-applicative, prettyprinter, tasty - , tasty-golden, text, transformers, utf8-string, yaml - }: - mkDerivation { - pname = "hpack-dhall"; - version = "0.5.4"; - sha256 = "0yhf9b1nadcz98bq84jzb80mc1w4a6sph5d6c4pnf2xj2akdxcxf"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty base bytestring dhall dhall-json filepath hpack - megaparsec microlens prettyprinter text transformers yaml - ]; - executableHaskellDepends = [ - aeson aeson-pretty base bytestring dhall dhall-json filepath hpack - megaparsec microlens optparse-applicative prettyprinter text - transformers yaml - ]; - testHaskellDepends = [ - aeson aeson-pretty base bytestring Cabal dhall dhall-json Diff - directory filepath hlint hpack megaparsec microlens prettyprinter - tasty tasty-golden text transformers utf8-string yaml - ]; - description = "hpack's dhalling"; - license = lib.licenses.bsd3; - }) {}; - - "hpack-dhall_0_5_7" = callPackage - ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal , dhall, dhall-json, Diff, directory, filepath, hpack, megaparsec , microlens, optparse-applicative, prettyprinter, tasty , tasty-golden, text, transformers, utf8-string, yaml @@ -145272,6 +144427,7 @@ self: { description = "hpack's dhalling"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hpaco" = callPackage @@ -145438,6 +144594,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Alternative to 'directory' package with ByteString based filepaths"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hpath-filepath" = callPackage @@ -145466,6 +144623,7 @@ self: { ]; description = "High-level IO operations on files/directories"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hpath-posix" = callPackage @@ -145553,6 +144711,8 @@ self: { pname = "hpc-lcov"; version = "1.1.0"; sha256 = "009z1i0ddjx7sazybirrpw99675p1fyl84ykg4dyypa7rz81vv3z"; + revision = "1"; + editedCabalFile = "0s1zx98fsa11kl4m34vrcs421pbp5f8za29xl59zp794632jng88"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers hpc ]; @@ -145903,7 +145063,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hprotoc"; - broken = true; }) {}; "hprotoc-fork" = callPackage @@ -146122,7 +145281,6 @@ self: { description = "Quantitative Library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) gsl;}; "hquantlib" = callPackage @@ -146154,7 +145312,6 @@ self: { license = "LGPL"; hydraPlatforms = lib.platforms.none; mainProgram = "mctest"; - broken = true; }) {}; "hquantlib-time" = callPackage @@ -146166,6 +145323,8 @@ self: { libraryHaskellDepends = [ base time ]; description = "HQuantLib Time is a business calendar functions extracted from HQuantLib"; license = "LGPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hquery" = callPackage @@ -146364,6 +145523,7 @@ self: { ]; description = "A Riemann Client for Haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "hriemann-exe"; }) {}; @@ -146542,20 +145702,18 @@ self: { }) {}; "hs-cdb" = callPackage - ({ mkDerivation, array, base, bytestring, bytestring-mmap - , directory, filepath, mtl + ({ mkDerivation, array, base, bytestring, directory, filepath, mmap + , mtl }: mkDerivation { pname = "hs-cdb"; - version = "0.1.1"; - sha256 = "07pkz35mmk7qaa9ahfxmj4dddja23ksn7dm1fp8g9v8z8d9r9zl0"; + version = "0.1.2"; + sha256 = "16mrj95f72f9n20szn1jk59y0hslqp22i9hm82swjymg7lykd9xf"; libraryHaskellDepends = [ - array base bytestring bytestring-mmap directory filepath mtl + array base bytestring directory filepath mmap mtl ]; description = "A library for reading CDB (Constant Database) files"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hs-conllu" = callPackage @@ -146704,8 +145862,6 @@ self: { libraryHaskellDepends = [ base dual tagged transformers ]; description = "Functors from products of Haskell and its dual to Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hs-gchart" = callPackage @@ -146778,7 +145934,6 @@ self: { libraryHaskellDepends = [ base hs-functors ]; description = "Indexed applicative functors and monads"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hs-java" = callPackage @@ -147039,8 +146194,6 @@ self: { unliftio vault ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hs-opentelemetry-instrumentation-http-client" = callPackage @@ -147343,7 +146496,6 @@ self: { libraryHaskellDepends = [ base hs-functors ]; description = "Profunctors from Haskell to Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hs-re" = callPackage @@ -147877,7 +147029,6 @@ self: { description = "OASIS Security Assertion Markup Language (SAML) V2.0"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) libxml2;}; "hsass" = callPackage @@ -148091,8 +147242,8 @@ self: { }: mkDerivation { pname = "hsc3"; - version = "0.19.1"; - sha256 = "0yz8h83hrnw28bwqqaa792w89y2pz1lkv3zwmwj9p2z8xv0hf14n"; + version = "0.20"; + sha256 = "1pi2zzcz6xrj5w0ql5g7z6qf2vbchixc871if2yqna8wndakhcc8"; enableSeparateDataOutput = true; libraryHaskellDepends = [ array base binary bytestring containers data-binary-ieee754 @@ -148101,6 +147252,8 @@ self: { ]; description = "Haskell SuperCollider"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hsc3-auditor" = callPackage @@ -148130,7 +147283,6 @@ self: { description = "haskell supercollider cairo drawing"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-data" = callPackage @@ -148162,7 +147314,6 @@ self: { description = "Haskell SuperCollider Unit Generator Database"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-dot" = callPackage @@ -148176,7 +147327,6 @@ self: { description = "haskell supercollider graph drawing"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-forth" = callPackage @@ -148245,7 +147395,6 @@ self: { description = "Haskell SuperCollider Language"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-lisp" = callPackage @@ -148305,7 +147454,6 @@ self: { description = "Create and control scsynth processes"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-rec" = callPackage @@ -148319,7 +147467,6 @@ self: { description = "Haskell SuperCollider Record Variants"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-rw" = callPackage @@ -148410,7 +147557,6 @@ self: { description = "Unsafe Haskell SuperCollider"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-utils" = callPackage @@ -148569,8 +147715,6 @@ self: { ]; description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hschema-aeson" = callPackage @@ -148601,6 +147745,7 @@ self: { description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hschema-prettyprinter" = callPackage @@ -148619,7 +147764,6 @@ self: { ]; description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "hschema-quickcheck" = callPackage @@ -148637,7 +147781,6 @@ self: { ]; description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "hscim" = callPackage @@ -149065,6 +148208,7 @@ self: { ]; description = "EXIF handling library in pure Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hsfacter" = callPackage @@ -149534,29 +148678,6 @@ self: { "hslua" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions - , hslua-classes, hslua-core, hslua-marshalling - , hslua-objectorientation, hslua-packaging, mtl, tasty, tasty-hslua - , tasty-hunit, text - }: - mkDerivation { - pname = "hslua"; - version = "2.1.0"; - sha256 = "0adii64aaq20dmsxkrac8smgwa9vm1ld1rpzz3m33vyyp1yfsjka"; - libraryHaskellDepends = [ - base bytestring containers exceptions hslua-classes hslua-core - hslua-marshalling hslua-objectorientation hslua-packaging mtl text - ]; - testHaskellDepends = [ - base bytestring containers exceptions hslua-classes hslua-core - hslua-marshalling hslua-objectorientation hslua-packaging mtl tasty - tasty-hslua tasty-hunit text - ]; - description = "Bindings to Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {}; - - "hslua_2_2_1" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions , hslua-aeson, hslua-classes, hslua-core, hslua-marshalling , hslua-objectorientation, hslua-packaging, lua, lua-arbitrary, mtl , QuickCheck, quickcheck-instances, tasty, tasty-hslua, tasty-hunit @@ -149579,7 +148700,6 @@ self: { ]; description = "Bindings to Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-aeson" = callPackage @@ -149590,29 +148710,6 @@ self: { }: mkDerivation { pname = "hslua-aeson"; - version = "2.1.0"; - sha256 = "0x966djzb9blrs586407qx6lz8bh23s048jv9nbgzy99qwxm20db"; - libraryHaskellDepends = [ - aeson base bytestring containers hashable hslua-core - hslua-marshalling mtl scientific text unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring containers hashable hslua-core - hslua-marshalling mtl QuickCheck quickcheck-instances scientific - tasty tasty-quickcheck text unordered-containers vector - ]; - description = "Allow aeson data types to be used with Lua"; - license = lib.licenses.mit; - }) {}; - - "hslua-aeson_2_2_1" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, hashable - , hslua-core, hslua-marshalling, mtl, QuickCheck - , quickcheck-instances, scientific, tasty, tasty-quickcheck, text - , unordered-containers, vector - }: - mkDerivation { - pname = "hslua-aeson"; version = "2.2.1"; sha256 = "0igmkay5bf3wg1n6rqm20kjv1xq36x552lgdvr1vlpwikgsiq8mb"; libraryHaskellDepends = [ @@ -149626,7 +148723,6 @@ self: { ]; description = "Allow aeson data types to be used with Lua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-classes" = callPackage @@ -149637,29 +148733,6 @@ self: { }: mkDerivation { pname = "hslua-classes"; - version = "2.1.0"; - sha256 = "0gz30ppa7fjm555mxmwfjq767wn6z60jkw36sdmryrby1raspz4s"; - libraryHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - text - ]; - testHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - lua-arbitrary QuickCheck quickcheck-instances tasty tasty-hslua - tasty-hunit tasty-quickcheck text - ]; - description = "Type classes for HsLua"; - license = lib.licenses.mit; - }) {}; - - "hslua-classes_2_2_0" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , hslua-core, hslua-marshalling, lua-arbitrary, QuickCheck - , quickcheck-instances, tasty, tasty-hslua, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-classes"; version = "2.2.0"; sha256 = "1z7ym3whcq16k2cm9jf7sf0vwmp52iv1f0iicvv4jk6xks9d6ia1"; libraryHaskellDepends = [ @@ -149673,7 +148746,6 @@ self: { ]; description = "Type classes for HsLua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-cli" = callPackage @@ -149700,26 +148772,6 @@ self: { }: mkDerivation { pname = "hslua-core"; - version = "2.1.0"; - sha256 = "1iaii879b13j8a8lgv78wja85ik2y5xlkv1mzckjl4nqn91968wq"; - libraryHaskellDepends = [ - base bytestring exceptions lua mtl text - ]; - testHaskellDepends = [ - base bytestring exceptions lua lua-arbitrary mtl QuickCheck - quickcheck-instances tasty tasty-hunit tasty-quickcheck text - ]; - description = "Bindings to Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {}; - - "hslua-core_2_2_1" = callPackage - ({ mkDerivation, base, bytestring, exceptions, lua, lua-arbitrary - , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-core"; version = "2.2.1"; sha256 = "0hy3a7rn940bcj0shxyk75dndwl23wwmmvbnwnay36py60hy3rbq"; libraryHaskellDepends = [ @@ -149731,7 +148783,6 @@ self: { ]; description = "Bindings to Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-examples" = callPackage @@ -149749,6 +148800,8 @@ self: { ]; description = "Examples of how to combine Haskell and Lua"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hslua-list" = callPackage @@ -149772,27 +148825,6 @@ self: { }: mkDerivation { pname = "hslua-marshalling"; - version = "2.1.0"; - sha256 = "0rp2bbk3smmx223c8x781311s29c0dhk0c5z3p8z1vxr3m3lhz1c"; - libraryHaskellDepends = [ - base bytestring containers hslua-core mtl text - ]; - testHaskellDepends = [ - base bytestring containers hslua-core lua-arbitrary mtl QuickCheck - quickcheck-instances tasty tasty-hslua tasty-hunit tasty-quickcheck - text - ]; - description = "Marshalling of values between Haskell and Lua"; - license = lib.licenses.mit; - }) {}; - - "hslua-marshalling_2_2_1" = callPackage - ({ mkDerivation, base, bytestring, containers, hslua-core - , lua-arbitrary, mtl, QuickCheck, quickcheck-instances, tasty - , tasty-hslua, tasty-hunit, tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-marshalling"; version = "2.2.1"; sha256 = "1xmix1frfcyv4p51rnshrg02gba7di7nrrc6chsq71d3mbwhyask"; libraryHaskellDepends = [ @@ -149805,7 +148837,6 @@ self: { ]; description = "Marshalling of values between Haskell and Lua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-module-doclayout" = callPackage @@ -149931,29 +148962,6 @@ self: { }: mkDerivation { pname = "hslua-objectorientation"; - version = "2.1.0"; - sha256 = "01ghqsaknl4b8l3f6src8q7b54r5crmja62mhfwhz8a35px3rzrx"; - libraryHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - mtl text - ]; - testHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - lua-arbitrary mtl QuickCheck quickcheck-instances tasty tasty-hslua - tasty-hunit tasty-quickcheck text - ]; - description = "Object orientation tools for HsLua"; - license = lib.licenses.mit; - }) {}; - - "hslua-objectorientation_2_2_1" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , hslua-core, hslua-marshalling, lua-arbitrary, mtl, QuickCheck - , quickcheck-instances, tasty, tasty-hslua, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-objectorientation"; version = "2.2.1"; sha256 = "13011yzz6lrgl2gasn9w5ggdqgrdz49hhqk1h259qd9gq29jnq3y"; libraryHaskellDepends = [ @@ -149967,7 +148975,6 @@ self: { ]; description = "Object orientation tools for HsLua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-packaging" = callPackage @@ -149977,27 +148984,6 @@ self: { }: mkDerivation { pname = "hslua-packaging"; - version = "2.1.0"; - sha256 = "0n8vhfi59q6dzcvi4fgsjp8w0slbl8l2s5l6rxgypb6vqgm759l9"; - libraryHaskellDepends = [ - base containers hslua-core hslua-marshalling - hslua-objectorientation mtl text - ]; - testHaskellDepends = [ - base bytestring hslua-core hslua-marshalling - hslua-objectorientation mtl tasty tasty-hslua tasty-hunit text - ]; - description = "Utilities to build Lua modules"; - license = lib.licenses.mit; - }) {}; - - "hslua-packaging_2_2_1" = callPackage - ({ mkDerivation, base, bytestring, containers, hslua-core - , hslua-marshalling, hslua-objectorientation, mtl, tasty - , tasty-hslua, tasty-hunit, text - }: - mkDerivation { - pname = "hslua-packaging"; version = "2.2.1"; sha256 = "1yxfrsxmmsb96lyfihlk9ks53l2z2aln3whfqaha7grs3gx1yaib"; libraryHaskellDepends = [ @@ -150010,7 +148996,6 @@ self: { ]; description = "Utilities to build Lua modules"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hsluv-haskell" = callPackage @@ -150125,6 +149110,7 @@ self: { libraryHaskellDepends = [ base hsndfile storablevector ]; description = "Haskell bindings for libsndfile (Data.StorableVector interface)"; license = lib.licenses.lgpl2Only; + hydraPlatforms = lib.platforms.none; }) {}; "hsndfile-vector" = callPackage @@ -150206,6 +149192,7 @@ self: { description = "Haskell NSQ client"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hsntp" = callPackage @@ -150390,8 +149377,8 @@ self: { }: mkDerivation { pname = "hspec"; - version = "2.8.5"; - sha256 = "0s6nc0nvf3qr2qdam12m6b8qixwzms0m2r9xwjx71dkjwg7nnga1"; + version = "2.9.7"; + sha256 = "092sfqjkargxxszp9jjqa8ldjz0xv34jwn6k21q59ys5ckvsrpc1"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -150399,14 +149386,14 @@ self: { license = lib.licenses.mit; }) {}; - "hspec_2_10_6" = callPackage + "hspec_2_10_7" = callPackage ({ mkDerivation, base, hspec-core, hspec-discover , hspec-expectations, QuickCheck }: mkDerivation { pname = "hspec"; - version = "2.10.6"; - sha256 = "129yk1ar962xf02axbdbcvx2icw09b2b6q7q1639391aikisivqz"; + version = "2.10.7"; + sha256 = "136icn9f0prl4p1yphaf2yzaq9zc8vaiq9xv5v76c5j95agvp9rr"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -150457,20 +149444,6 @@ self: { }) {}; "hspec-contrib" = callPackage - ({ mkDerivation, base, hspec, hspec-core, HUnit, QuickCheck }: - mkDerivation { - pname = "hspec-contrib"; - version = "0.5.1"; - sha256 = "0hhzxaa3fxz5mk5qcsrnfr98a7bn3szx2ydgr0x9mbqmm1jg06rc"; - revision = "2"; - editedCabalFile = "12jwqbddqx8j69b04q3kzwvnkwh6l9cv8b5fvph4n6nrqnk81mp9"; - libraryHaskellDepends = [ base hspec-core HUnit ]; - testHaskellDepends = [ base hspec hspec-core HUnit QuickCheck ]; - description = "Contributed functionality for Hspec"; - license = lib.licenses.mit; - }) {}; - - "hspec-contrib_0_5_1_1" = callPackage ({ mkDerivation, base, hspec, hspec-core, hspec-discover, HUnit , QuickCheck }: @@ -150483,7 +149456,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Contributed functionality for Hspec"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hspec-core_2_7_10" = callPackage @@ -150518,27 +149490,25 @@ self: { "hspec-core" = callPackage ({ mkDerivation, ansi-terminal, array, base, base-orphans - , call-stack, clock, deepseq, directory, filepath + , call-stack, clock, deepseq, directory, filepath, ghc, ghc-boot-th , hspec-expectations, hspec-meta, HUnit, process, QuickCheck , quickcheck-io, random, setenv, silently, stm, temporary , tf-random, transformers }: mkDerivation { pname = "hspec-core"; - version = "2.8.5"; - sha256 = "0hy3qw7qvix5899hkq96mqda2ridif2g3mwdn8sxg2wlhbcvzfjm"; - revision = "1"; - editedCabalFile = "1nwki2mb64akmc7585cmjhiizwm090j7gqx5js1h9rmvl7z2zfbx"; + version = "2.9.7"; + sha256 = "040rzqiqwkp373jjpij8lkmv08pp2ya92zzcf95bw8px215rp08n"; libraryHaskellDepends = [ ansi-terminal array base call-stack clock deepseq directory - filepath hspec-expectations HUnit QuickCheck quickcheck-io random - setenv stm tf-random transformers + filepath ghc ghc-boot-th hspec-expectations HUnit QuickCheck + quickcheck-io random setenv stm tf-random transformers ]; testHaskellDepends = [ ansi-terminal array base base-orphans call-stack clock deepseq - directory filepath hspec-expectations hspec-meta HUnit process - QuickCheck quickcheck-io random setenv silently stm temporary - tf-random transformers + directory filepath ghc ghc-boot-th hspec-expectations hspec-meta + HUnit process QuickCheck quickcheck-io random setenv silently stm + temporary tf-random transformers ]; testToolDepends = [ hspec-meta ]; testTarget = "--test-option=--skip --test-option='Test.Hspec.Core.Runner.hspecResult runs specs in parallel'"; @@ -150546,27 +149516,27 @@ self: { license = lib.licenses.mit; }) {}; - "hspec-core_2_10_6" = callPackage + "hspec-core_2_10_7" = callPackage ({ mkDerivation, ansi-terminal, array, base, base-orphans - , call-stack, deepseq, directory, filepath, ghc, ghc-boot-th + , call-stack, deepseq, directory, filepath, haskell-lexer , hspec-expectations, hspec-meta, HUnit, process, QuickCheck , quickcheck-io, random, setenv, silently, stm, temporary , tf-random, time, transformers }: mkDerivation { pname = "hspec-core"; - version = "2.10.6"; - sha256 = "1cz02l3xkj91f41ghz3mkm5nxl6zaj5kgam63rqp8f0yxzhfrvwm"; + version = "2.10.7"; + sha256 = "01ikjgdc5fpblw7y1h50j0dbgw3drjz26slcalzhvqza7523jn2g"; libraryHaskellDepends = [ - ansi-terminal array base call-stack deepseq directory filepath ghc - ghc-boot-th hspec-expectations HUnit process QuickCheck + ansi-terminal array base call-stack deepseq directory filepath + haskell-lexer hspec-expectations HUnit process QuickCheck quickcheck-io random setenv stm tf-random time transformers ]; testHaskellDepends = [ ansi-terminal array base base-orphans call-stack deepseq directory - filepath ghc ghc-boot-th hspec-expectations hspec-meta HUnit - process QuickCheck quickcheck-io random setenv silently stm - temporary tf-random time transformers + filepath haskell-lexer hspec-expectations hspec-meta HUnit process + QuickCheck quickcheck-io random setenv silently stm temporary + tf-random time transformers ]; testToolDepends = [ hspec-meta ]; testTarget = "--test-option=--skip --test-option='Test.Hspec.Core.Runner.hspecResult runs specs in parallel'"; @@ -150621,8 +149591,8 @@ self: { }: mkDerivation { pname = "hspec-discover"; - version = "2.8.5"; - sha256 = "031nay0zmzvpiax3wa990qj74sqrh27vq1lljiamwbzr3b68vy04"; + version = "2.9.7"; + sha256 = "0536kdxjw6p8b6gcwvmr22jbmb6cgzbddi0fkd01b2m847z37sb5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -150637,14 +149607,14 @@ self: { maintainers = [ lib.maintainers.maralorn ]; }) {}; - "hspec-discover_2_10_6" = callPackage + "hspec-discover_2_10_7" = callPackage ({ mkDerivation, base, directory, filepath, hspec-meta, mockery , QuickCheck }: mkDerivation { pname = "hspec-discover"; - version = "2.10.6"; - sha256 = "0x7yx55l2cngg4vw2k4mirajbprpa7bkx8rnyvyads8c6f97s71v"; + version = "2.10.7"; + sha256 = "0xx38v8b8xplqi2jazng57z4xfm9lzb21ldpm428s28kl71br1vd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -150887,30 +149857,6 @@ self: { "hspec-junit-formatter" = callPackage ({ mkDerivation, base, conduit, containers, directory, exceptions - , filepath, hspec, hspec-core, markdown-unlit, temporary, text - , time, xml-conduit, xml-types - }: - mkDerivation { - pname = "hspec-junit-formatter"; - version = "1.0.3.0"; - sha256 = "06003bw98bp9jl379463x1bk3ds30spsmg9h4lvr367k6diyi6ax"; - libraryHaskellDepends = [ - base conduit containers directory exceptions filepath hspec-core - text time xml-conduit xml-types - ]; - testHaskellDepends = [ - base containers filepath hspec hspec-core markdown-unlit temporary - text xml-conduit - ]; - testToolDepends = [ markdown-unlit ]; - description = "A JUnit XML runner/formatter for hspec"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "hspec-junit-formatter_1_1_0_2" = callPackage - ({ mkDerivation, base, conduit, containers, directory, exceptions , filepath, hspec, hspec-core, iso8601-time, markdown-unlit , temporary, text, time, xml-conduit, xml-types }: @@ -150974,7 +149920,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "hspec-meta" = callPackage + "hspec-meta_2_7_8" = callPackage ({ mkDerivation, ansi-terminal, array, base, call-stack, clock , deepseq, directory, filepath, QuickCheck, quickcheck-io, random , setenv, stm, time, transformers @@ -150997,6 +149943,33 @@ self: { ]; description = "A version of Hspec which is used to test Hspec itself"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "hspec-meta-discover"; + }) {}; + + "hspec-meta" = callPackage + ({ mkDerivation, ansi-terminal, array, base, call-stack, clock + , deepseq, directory, filepath, ghc, ghc-boot-th, QuickCheck + , quickcheck-io, random, setenv, stm, time, transformers + }: + mkDerivation { + pname = "hspec-meta"; + version = "2.9.3"; + sha256 = "1raxwpsmcijl3x2h5naw6aydhbiknxvhj3x7v384bi1rqi51ainm"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-terminal array base call-stack clock deepseq directory + filepath ghc ghc-boot-th QuickCheck quickcheck-io random setenv stm + time transformers + ]; + executableHaskellDepends = [ + ansi-terminal array base call-stack clock deepseq directory + filepath ghc ghc-boot-th QuickCheck quickcheck-io random setenv + time transformers + ]; + description = "A version of Hspec which is used to test Hspec itself"; + license = lib.licenses.mit; mainProgram = "hspec-meta-discover"; }) {}; @@ -151406,6 +150379,7 @@ self: { description = "Write end2end web application tests using webdriver and hspec"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hspec2" = callPackage @@ -151433,6 +150407,7 @@ self: { testHaskellDepends = [ base hspec QuickCheck QuickCheckVariant ]; description = "Spec for testing properties"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; }) {}; "hspkcs11" = callPackage @@ -151466,6 +150441,22 @@ self: { license = lib.licenses.publicDomain; }) {}; + "hspray" = callPackage + ({ mkDerivation, base, containers, hashable, numeric-prelude, tasty + , tasty-hunit, text, unordered-containers + }: + mkDerivation { + pname = "hspray"; + version = "0.1.1.0"; + sha256 = "1x8vya93aqcbipw6m0rwza8xk59im49bms4w5525s24mw82cnsjq"; + libraryHaskellDepends = [ + base containers hashable numeric-prelude text unordered-containers + ]; + testHaskellDepends = [ base tasty tasty-hunit ]; + description = "Multivariate polynomials"; + license = lib.licenses.gpl3Only; + }) {}; + "hspread" = callPackage ({ mkDerivation, base, binary, bytestring, containers , extensible-exceptions, network @@ -152251,7 +151242,6 @@ self: { ]; description = "hsp+jmacro support"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hsx-xhtml" = callPackage @@ -152332,7 +151322,6 @@ self: { description = "syslog over TCP"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsyslog-udp" = callPackage @@ -152349,6 +151338,8 @@ self: { testHaskellDepends = [ base hspec time ]; description = "Log to syslog over a network via UDP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hszephyr" = callPackage @@ -152444,7 +151435,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "htar"; - broken = true; }) {}; "htaut" = callPackage @@ -152573,8 +151563,8 @@ self: { }: mkDerivation { pname = "html-charset"; - version = "0.1.0"; - sha256 = "05d0syzpxbr3y8hkk35pfpsfm8gwg5zwb72l89frrl7i6cv1b24i"; + version = "0.1.1"; + sha256 = "1561m08j6davlwg4mzv6lr42536hpgmcrxkyvg265lhwrzizi4nk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -152588,9 +151578,7 @@ self: { ]; description = "Determine character encoding of HTML documents/fragments"; license = lib.licenses.lgpl21Only; - hydraPlatforms = lib.platforms.none; mainProgram = "html-charset"; - broken = true; }) {}; "html-conduit" = callPackage @@ -152727,8 +151715,6 @@ self: { ]; description = "A high-performance HTML tokenizer"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "html-parse-util" = callPackage @@ -152740,7 +151726,6 @@ self: { libraryHaskellDepends = [ attoparsec base html-parse text ]; description = "Utility functions for working with html-parse"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "html-presentation-text" = callPackage @@ -152990,6 +151975,7 @@ self: { description = "Haskell Music Typesetting"; license = "GPL"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "htsn" = callPackage @@ -153150,8 +152136,8 @@ self: { pname = "http-api-data-qq"; version = "0.1.0.0"; sha256 = "1lvfdbprdwq09k1wkjfvvkpi79053dc4kzkv4g1cx94qb1flbd7a"; - revision = "1"; - editedCabalFile = "1s7swrw42i5zpj99z5559480fi0zsnf1j1g0qhs536fjqs2bdfx4"; + revision = "2"; + editedCabalFile = "03gwjxnd0kcnh18bzlwkb8yivmcjrl8wb0v82y4jqvjy19d61d0n"; libraryHaskellDepends = [ base http-api-data template-haskell text ]; @@ -153363,22 +152349,6 @@ self: { }: mkDerivation { pname = "http-client-restricted"; - version = "0.0.4"; - sha256 = "0jljvfjbdjxj61m6nznysbh9y7nszrzmdv0i8ndxgshnmc19q9h1"; - libraryHaskellDepends = [ - base connection data-default http-client http-client-tls network - network-bsd utf8-string - ]; - description = "restricting the servers that http-client will use"; - license = lib.licenses.mit; - }) {}; - - "http-client-restricted_0_0_5" = callPackage - ({ mkDerivation, base, connection, data-default, http-client - , http-client-tls, network, network-bsd, utf8-string - }: - mkDerivation { - pname = "http-client-restricted"; version = "0.0.5"; sha256 = "1vfm9qc3zr0rmq2ddgyg13i67020cdk8xqhyzfc2zcn1km2p6r85"; libraryHaskellDepends = [ @@ -153387,7 +152357,6 @@ self: { ]; description = "restricting the servers that http-client will use"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "http-client-rustls" = callPackage @@ -153678,6 +152647,7 @@ self: { ]; description = "A library for encoding and decoding bodies of HTTP messages"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "http-enumerator" = callPackage @@ -153781,6 +152751,8 @@ self: { ]; description = "A low-level HTTP library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "http-link-header" = callPackage @@ -153902,6 +152874,7 @@ self: { description = "A type unsafe http library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "http-pony-serve-wai" = callPackage @@ -154281,8 +153254,6 @@ self: { testHaskellDepends = [ base ]; description = "A native HTTP2 client library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "http2-client-exe" = callPackage @@ -154304,6 +153275,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "http2-client-exe"; + broken = true; }) {}; "http2-client-grpc" = callPackage @@ -154341,7 +153313,6 @@ self: { description = "Encoders based on `proto-lens` for gRPC over HTTP2"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "http2-grpc-proto3-wire" = callPackage @@ -154375,6 +153346,8 @@ self: { ]; description = "Types for gRPC over HTTP2 common for client and servers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "http3" = callPackage @@ -154914,7 +153887,6 @@ self: { ]; description = "Unpacker tool with DWIM"; license = "GPL"; - hydraPlatforms = lib.platforms.none; mainProgram = "hunp"; }) {}; @@ -154932,8 +153904,6 @@ self: { benchmarkPkgconfigDepends = [ hunspell ]; description = "Hunspell thread-safe FFI bindings for spell checking"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) hunspell;}; "hunt-searchengine" = callPackage @@ -155366,10 +154336,8 @@ self: { }: mkDerivation { pname = "hw-balancedparens"; - version = "0.4.1.2"; - sha256 = "163jvw8nnhf3q3h6c16hjdkdzp6y3l2hyvk7hzynhylifg7kki95"; - revision = "2"; - editedCabalFile = "0m3q539nlcfgmxir78vzsyh3c9pf10hx2czh1d16ih1p52mhwbjd"; + version = "0.4.1.3"; + sha256 = "0cp8nzm99ap0j8qzsn15rxcvxa3k6bywqx0y5ccflpvqysd88wfc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -155579,7 +154547,9 @@ self: { ]; description = "File Dump"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-dump"; + broken = true; }) {}; "hw-eliasfano" = callPackage @@ -155875,6 +154845,8 @@ self: { ]; description = "Lens for hw-json"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hw-json-simd" = callPackage @@ -156002,7 +154974,6 @@ self: { testHaskellDepends = [ base hedgehog hspec hw-hspec-hedgehog ]; description = "Avro support for Kafka infrastructure"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hw-kafka-client" = callPackage @@ -156096,8 +155067,6 @@ self: { testToolDepends = [ doctest-discover hspec-discover ]; description = "Combinators for lazy IO"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hw-mquery" = callPackage @@ -156247,7 +155216,9 @@ self: { description = "Primitive support for bit manipulation"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-prim-bits-exe"; + broken = true; }) {}; "hw-rankselect" = callPackage @@ -156380,7 +155351,9 @@ self: { testToolDepends = [ doctest-discover ]; description = "SIMD library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-simd"; + broken = true; }) {}; "hw-streams" = callPackage @@ -156468,7 +155441,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "Library for creating and extracting tar archives"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-tar"; + broken = true; }) {}; "hw-uri" = callPackage @@ -156904,8 +155879,6 @@ self: { ]; description = "Cache for HXT XML Documents and other binary data"; license = "unknown"; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hxt-charproperties" = callPackage @@ -157195,6 +156168,29 @@ self: { license = lib.licenses.bsd3; }) {}; + "hydra" = callPackage + ({ mkDerivation, aeson, aeson-pretty, base, bytestring, containers + , directory, filepath, hspec, hspec-discover, HsYAML, HUnit + , QuickCheck, scientific, split, text, unordered-containers, vector + }: + mkDerivation { + pname = "hydra"; + version = "0.1.1"; + sha256 = "1ljr6id1z4ym6ipmjhz1msmnqfbsj1z5klhx27dhxwmbfv5ndhyn"; + libraryHaskellDepends = [ + aeson aeson-pretty base bytestring containers directory filepath + HsYAML scientific split text unordered-containers vector + ]; + testHaskellDepends = [ + aeson aeson-pretty base bytestring containers directory filepath + hspec hspec-discover HsYAML HUnit QuickCheck scientific split text + unordered-containers vector + ]; + testToolDepends = [ hspec-discover ]; + description = "Type-aware transformations for data and programs"; + license = lib.licenses.asl20; + }) {}; + "hydra-hs" = callPackage ({ mkDerivation, base, hmatrix, sixense_x64 }: mkDerivation { @@ -157523,6 +156519,8 @@ self: { libraryHaskellDepends = [ base blaze-html deepseq text ]; description = "Display class for the HyperHaskell graphical Haskell interpreter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hyper-extra" = callPackage @@ -157538,6 +156536,7 @@ self: { ]; description = "Display instances for the HyperHaskell graphical Haskell interpreter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hyper-haskell-server" = callPackage @@ -157559,7 +156558,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hyper-haskell-server"; - broken = true; }) {}; "hyperdrive" = callPackage @@ -157606,22 +156604,20 @@ self: { }: mkDerivation { pname = "hypergeomatrix"; - version = "1.1.0.0"; - sha256 = "1463xpbm3q8ifnjsgddfplpsjnzzfksmpy8g21l2zqmcvghb64bn"; + version = "1.1.0.1"; + sha256 = "02pmjjbdnl5g1zhzs1cb32k1z5g3xkdkpz1idx8xf5gnyxcssy38"; libraryHaskellDepends = [ array base containers cyclotomic ]; testHaskellDepends = [ base tasty tasty-hunit ]; description = "Hypergeometric function of a matrix argument"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hypergeometric" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "hypergeometric"; - version = "0.1.2.0"; - sha256 = "19vxqc9ng2vfvqxslxb950ygdqdd3cbqs4m6nqw8mbyjgld2wqd8"; + version = "0.1.4.0"; + sha256 = "153j8ml8gqgmgzd6aybwcwvrnafgz54myl42l293mj64kcc1yc9r"; libraryHaskellDepends = [ base ]; description = "Hypergeometric functions"; license = lib.licenses.agpl3Only; @@ -157756,6 +156752,8 @@ self: { ]; description = "Typed ASTs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hyphenate" = callPackage @@ -158154,6 +157152,7 @@ self: { ]; description = "Lattice iCE40 Primitive IP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "icepeak" = callPackage @@ -158168,8 +157167,8 @@ self: { }: mkDerivation { pname = "icepeak"; - version = "0.7.4.0"; - sha256 = "1jjcjl0i9brdzflfz4b7fba420rwgmv74b1qz7ii6m4bd7i4jkzp"; + version = "1.0.0.0"; + sha256 = "0w8s4kfm97i8pjy6nfi7b0rqd1g83fxpm0lqpwdcxqz443lcwqpa"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -158236,6 +157235,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "String encoding conversion"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "iconv-typed" = callPackage @@ -158253,7 +157254,6 @@ self: { description = "Type safe iconv wrapper"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ide-backend" = callPackage @@ -158647,6 +157647,8 @@ self: { ]; description = "Functional Programming Language with Dependent Types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) gmp;}; "ieee" = callPackage @@ -158775,6 +157777,8 @@ self: { libraryHaskellDepends = [ base binary bytestring ]; description = "Constructing and dissecting IFF files"; license = "GPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ifscs" = callPackage @@ -159095,7 +158099,6 @@ self: { ]; description = "Embed R quasiquotes and plots in IHaskell notebooks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ihaskell-juicypixels" = callPackage @@ -159210,8 +158213,6 @@ self: { ]; description = "JSX-like but for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ihs" = callPackage @@ -159301,6 +158302,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "Determine the type of an image by reading the first bytes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "imagefilters" = callPackage @@ -159802,19 +158805,18 @@ self: { }) {}; "implicit-hie" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, Cabal-syntax - , directory, filepath, filepattern, hspec, hspec-attoparsec, text - , transformers, yaml + ({ mkDerivation, attoparsec, base, directory, filepath, filepattern + , hspec, hspec-attoparsec, text, transformers, yaml }: mkDerivation { pname = "implicit-hie"; - version = "0.1.3.0"; - sha256 = "0s2h09gp1z81fxc9j5vcxvzyvf5nvqyhkw7mwq4sg8jjpm0r4gn3"; + version = "0.1.2.7"; + sha256 = "0yb457n26455kbq6kv8g48q66pmmaxcpikmpg9gm00sd6adgq6gl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - attoparsec base bytestring Cabal-syntax directory filepath - filepattern text transformers yaml + attoparsec base directory filepath filepattern text transformers + yaml ]; executableHaskellDepends = [ attoparsec base directory filepath filepattern text transformers @@ -160030,6 +159032,8 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Mutable containers in Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "in-other-words" = callPackage @@ -160133,6 +159137,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Simple parser combinators for lexical analysis"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "incipit" = callPackage @@ -160141,16 +159147,14 @@ self: { }: mkDerivation { pname = "incipit"; - version = "0.4.0.0"; - sha256 = "0w4wipaq0iscfnv68x5insjbcqcrnfx6r75lkq6v7nxj1y124yqa"; + version = "0.5.0.0"; + sha256 = "137i92xfpchyvnrckb8876cxw514zxf53hbzqyyj6f4mipiq319j"; libraryHaskellDepends = [ base incipit-core polysemy-conc polysemy-log polysemy-resume polysemy-time ]; description = "A Prelude for Polysemy"; license = "BSD-2-Clause-Patent"; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "incipit-base" = callPackage @@ -160662,6 +159666,7 @@ self: { ]; description = "A collection of implementations of IndieWeb algorithms"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "indigo" = callPackage @@ -160775,6 +159780,105 @@ self: { broken = true; }) {}; + "inferno-core" = callPackage + ({ mkDerivation, base, bimap, bytestring, containers, cryptonite + , exceptions, generic-lens, hspec, hspec-golden-aeson + , inferno-types, inferno-vc, megaparsec, memory, mtl + , parser-combinators, picosat, pretty-simple, prettyprinter + , QuickCheck, recursion-schemes, syb, template-haskell, text, time + }: + mkDerivation { + pname = "inferno-core"; + version = "0.1.0.0"; + sha256 = "06w8fbxvajqgaqvwdfrinfmgb19m3l6kkcgy3gigcg68x3p4ml1y"; + libraryHaskellDepends = [ + base bimap bytestring containers cryptonite exceptions generic-lens + inferno-types megaparsec memory mtl parser-combinators picosat + prettyprinter recursion-schemes syb template-haskell text time + ]; + testHaskellDepends = [ + base containers exceptions hspec hspec-golden-aeson inferno-types + inferno-vc megaparsec mtl pretty-simple prettyprinter QuickCheck + recursion-schemes text + ]; + description = "A statically-typed functional scripting language"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "inferno-lsp" = callPackage + ({ mkDerivation, base, bytestring, co-log-core, containers + , inferno-core, inferno-types, inferno-vc, lsp, lsp-types + , megaparsec, microlens, mtl, plow-log, plow-log-async + , prettyprinter, safe, special-keys, stm, text, text-rope, time + , transformers, uuid + }: + mkDerivation { + pname = "inferno-lsp"; + version = "0.1.0"; + sha256 = "12ss0zq9jwvggjlzsyzbdl1afli3h6w2fl3bs9cbg1k42zzj44s4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring co-log-core containers inferno-core inferno-types + inferno-vc lsp lsp-types megaparsec microlens mtl plow-log + plow-log-async prettyprinter safe special-keys stm text text-rope + time transformers uuid + ]; + executableHaskellDepends = [ base ]; + description = "LSP for Inferno"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "inferno-lsp-server"; + }) {}; + + "inferno-types" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bifunctors + , bytestring, cereal, containers, cryptonite, deepseq, hashable + , megaparsec, memory, mtl, prettyprinter, QuickCheck + , quickcheck-arbitrary-adt, quickcheck-instances, recursion-schemes + , servant, text + }: + mkDerivation { + pname = "inferno-types"; + version = "0.1.0.0"; + sha256 = "1jbp7kirh7cwgi3q1qzrb3hrrarymb1830q1gbs5xszkn0i08gyb"; + libraryHaskellDepends = [ + aeson base base64-bytestring bifunctors bytestring cereal + containers cryptonite deepseq hashable megaparsec memory mtl + prettyprinter QuickCheck quickcheck-arbitrary-adt + quickcheck-instances recursion-schemes servant text + ]; + description = "Core types for Inferno"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "inferno-vc" = callPackage + ({ mkDerivation, aeson, async, base, base64-bytestring, bytestring + , containers, cryptonite, directory, filepath, generic-lens + , http-client, http-types, inferno-types, lens, mtl, plow-log + , QuickCheck, quickcheck-arbitrary-adt, quickcheck-instances + , servant, servant-client, servant-server, servant-typed-error + , text, time, wai, wai-extra, warp, yaml, zlib + }: + mkDerivation { + pname = "inferno-vc"; + version = "0.1.0"; + sha256 = "1chq43r134hn0hl910y2lyawpllw8yzdai2kzdmbhawac3q640if"; + libraryHaskellDepends = [ + aeson async base base64-bytestring bytestring containers cryptonite + directory filepath generic-lens http-client http-types + inferno-types lens mtl plow-log QuickCheck quickcheck-arbitrary-adt + quickcheck-instances servant servant-client servant-server + servant-typed-error text time wai wai-extra warp yaml zlib + ]; + description = "Version control server for Inferno"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "infernu" = callPackage ({ mkDerivation, base, containers, digits, either, fgl , language-ecmascript, mtl, optparse-applicative, parsec @@ -161013,6 +160117,8 @@ self: { libraryHaskellDepends = [ base inj ]; description = "'Inj' instances for 'base'"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "inject" = callPackage @@ -161062,6 +160168,8 @@ self: { ]; description = "Canonical categorical conversions (injections and projections)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "inline-asm" = callPackage @@ -161087,8 +160195,6 @@ self: { description = "Inline some Assembly in ur Haskell!"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "inline-c" = callPackage @@ -161212,8 +160318,6 @@ self: { ]; description = "Seamlessly call R from Haskell and vice versa. No FFI required."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) R;}; "inliterate" = callPackage @@ -161338,7 +160442,6 @@ self: { ]; description = "A simple proxy for debugging plaintext protocols communication"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "inspection-proxy"; }) {}; @@ -161410,8 +160513,8 @@ self: { }: mkDerivation { pname = "instana-haskell-trace-sdk"; - version = "0.8.0.0"; - sha256 = "008r4164idzd9877crmmyc8yl63ssm8pszr75h7gkz8j9kyibrsp"; + version = "0.9.0.0"; + sha256 = "08w7s8pa2c2qbw3hwxlmgdlibhvnlb9a9z0jy09drfqgv0qfsk3p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -161668,6 +160771,8 @@ self: { ]; description = "Interval map"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "int-like" = callPackage @@ -161723,8 +160828,6 @@ self: { testHaskellDepends = [ base containers doctest primitive ]; description = "Advent of Code 2019 intcode interpreter"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "integer-gmp_1_1" = callPackage @@ -161797,6 +160900,23 @@ self: { libraryHaskellDepends = [ ghc-prim ]; description = "Simple Integer library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "integer-types" = callPackage + ({ mkDerivation, base, deepseq, exceptions, hedgehog, hspec }: + mkDerivation { + pname = "integer-types"; + version = "0.0.0.0"; + sha256 = "1hny749vzc9bp0dqhypfanxnjjp6s87nmwm17xzh75742ajcf86z"; + revision = "1"; + editedCabalFile = "0c5xfvy8cspzbakng4rnnhc45n24hjrldf14i8ipp2l94n8mvn8y"; + libraryHaskellDepends = [ base deepseq exceptions hedgehog ]; + testHaskellDepends = [ base deepseq exceptions hedgehog hspec ]; + doHaddock = false; + description = "Integer, Natural, and Positive"; + license = lib.licenses.asl20; }) {}; "integration" = callPackage @@ -161855,7 +160975,6 @@ self: { description = "Hardware accelerated AES encryption and Random Number Generation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {intel_aes = null;}; "intensional-datatys" = callPackage @@ -161915,7 +161034,9 @@ self: { executableHaskellDepends = [ base ]; description = "Interactive quick time series plotting"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "interactive-plot-demo"; + broken = true; }) {}; "interchangeable" = callPackage @@ -162344,7 +161465,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "An implementation of Allen's interval algebra for temporal logic"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "tutorial"; + broken = true; }) {}; "interval-functor" = callPackage @@ -162361,21 +161484,23 @@ self: { "interval-patterns" = callPackage ({ mkDerivation, base, containers, groups, hspec, lattices - , QuickCheck, relude, semirings, time, time-compat + , QuickCheck, semirings, time, time-compat }: mkDerivation { pname = "interval-patterns"; - version = "0.5.0.0"; - sha256 = "1ayvhjg7a8z7wp1pqsf4wcvxj5y3izsxz3b53q57dsvrlsc9i0kg"; + version = "0.6.0.0"; + sha256 = "0f0gy1442v7di34bngssihhyb6vmhdi71j8yqmii8c7xxvnpr69a"; libraryHaskellDepends = [ - base containers groups lattices relude semirings time time-compat + base containers groups lattices semirings time time-compat ]; testHaskellDepends = [ - base containers groups hspec lattices QuickCheck relude semirings - time time-compat + base containers groups hspec lattices QuickCheck semirings time + time-compat ]; description = "Intervals, and monoids thereof"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "interval-tree-clock" = callPackage @@ -162476,6 +161601,8 @@ self: { ]; description = "Safe and minimal prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "intro-prelude" = callPackage @@ -162492,7 +161619,6 @@ self: { description = "Intro reexported as Prelude"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "introduction" = callPackage @@ -162577,28 +161703,6 @@ self: { }: mkDerivation { pname = "invariant"; - version = "0.5.6"; - sha256 = "1l73wlnmh09187w8y61qyjjycpljds9lydy16ifa08bmmbxgkzcw"; - libraryHaskellDepends = [ - array base bifunctors comonad containers contravariant ghc-prim - profunctors StateVar stm tagged template-haskell th-abstraction - transformers transformers-compat unordered-containers - ]; - testHaskellDepends = [ base hspec QuickCheck template-haskell ]; - testToolDepends = [ hspec-discover ]; - description = "Haskell98 invariant functors"; - license = lib.licenses.bsd2; - }) {}; - - "invariant_0_6" = callPackage - ({ mkDerivation, array, base, bifunctors, comonad, containers - , contravariant, ghc-prim, hspec, hspec-discover, profunctors - , QuickCheck, StateVar, stm, tagged, template-haskell - , th-abstraction, transformers, transformers-compat - , unordered-containers - }: - mkDerivation { - pname = "invariant"; version = "0.6"; sha256 = "07ffgcfpacsdihcmcmx2m1gp8czlg28657bxncxjykjiiiwjlaxm"; revision = "1"; @@ -162612,7 +161716,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Haskell98 invariant functors"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "inventory" = callPackage @@ -162639,7 +161742,9 @@ self: { ]; description = "Project statistics and definition analysis"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "inventory"; + broken = true; }) {}; "invert" = callPackage @@ -162717,7 +161822,6 @@ self: { description = "invertible functions and instances for HList"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "invertible-hxt" = callPackage @@ -163669,7 +162773,9 @@ self: { executableHaskellDepends = [ base ]; description = "A library for writing IRC bots"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "ircbot-demo"; + broken = true; }) {}; "ircbouncer" = callPackage @@ -163751,7 +162857,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "iridium"; - broken = true; }) {}; "iris" = callPackage @@ -164118,8 +163223,6 @@ self: { ]; description = "Isomorphism typeclass solving the conversion problem"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "isotope" = callPackage @@ -164436,7 +163539,9 @@ self: { executableHaskellDepends = [ base bytestring ]; description = "Enable graphical display of images inline on some terminals"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "it2-show"; + broken = true; }) {}; "iterm-show-JuicyPixels" = callPackage @@ -164450,6 +163555,7 @@ self: { libraryHaskellDepends = [ base iterm-show JuicyPixels ]; description = "Orphan Show instances for JuciyPixels image types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "iterm-show-diagrams" = callPackage @@ -164467,6 +163573,7 @@ self: { ]; description = "Orphan Show instances for diagrams package that render inline in some terminals"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "ival" = callPackage @@ -165034,7 +164141,6 @@ self: { doHaddock = false; description = "Functional, expression-oriented data processing language"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "ja"; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -165046,10 +164152,8 @@ self: { }: mkDerivation { pname = "jack"; - version = "0.7.2"; - sha256 = "0aa7nz8ybsw7s0nmf12kxnjm5z1afj88c97b1w17b7lvdwvfs3cx"; - revision = "1"; - editedCabalFile = "16g5xc67811jvckfn0xfvcwbxi0kcx1qh87pyhrqvrp4k8m68g2v"; + version = "0.7.2.1"; + sha256 = "03cf6yb3nbcwy0429b0r2dxj6dvk295y4w73lyc6fpjh001yp7c9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -165090,15 +164194,18 @@ self: { }) {}; "jackpolynomials" = callPackage - ({ mkDerivation, array, base, ilist, lens, math-functions - , mpolynomials, numeric-prelude + ({ mkDerivation, array, base, hspray, hypergeomatrix, ilist, lens + , math-functions, numeric-prelude, tasty, tasty-hunit }: mkDerivation { pname = "jackpolynomials"; - version = "1.0.0.0"; - sha256 = "13marv1cl4c5xprwjn7yz3hbwln2cnmxski945saf3azs67ki824"; + version = "1.1.0.1"; + sha256 = "0wss00638zsi9zsphmr7pw19rdcvqfmd6fcc0wwhpkz6mkzm4c9s"; libraryHaskellDepends = [ - array base ilist lens math-functions mpolynomials numeric-prelude + array base hspray ilist lens math-functions numeric-prelude + ]; + testHaskellDepends = [ + base hspray hypergeomatrix tasty tasty-hunit ]; description = "Jack, zonal, and Schur polynomials"; license = lib.licenses.gpl3Only; @@ -165160,6 +164267,7 @@ self: { description = "Jailed IO monad"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jailbreak-cabal" = callPackage @@ -165174,7 +164282,7 @@ self: { description = "Strip version restrictions from Cabal files"; license = lib.licenses.bsd3; mainProgram = "jailbreak-cabal"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "jalaali" = callPackage @@ -165232,7 +164340,9 @@ self: { executableHaskellDepends = [ base boxes directory filepath ]; description = "Export sheet music and audio from Windows/Mac app Jammit"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "jammittools"; + broken = true; }) {}; "japanese-calendar" = callPackage @@ -165342,7 +164452,9 @@ self: { executableToolDepends = [ alex happy ]; description = "Create immutable algebraic data structures for Java"; license = "unknown"; + hydraPlatforms = lib.platforms.none; mainProgram = "java-adt"; + broken = true; }) {}; "java-bridge" = callPackage @@ -165367,7 +164479,6 @@ self: { description = "Bindings to the JNI and a high level interface generator"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "java-bridge-extras" = callPackage @@ -165824,7 +164935,6 @@ self: { ]; description = "QuasiQuotation library for programmatic generation of Javascript code"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "jmacro"; }) {}; @@ -165845,6 +164955,7 @@ self: { description = "JSON-RPC clients and servers using JMacro, and evented client-server Reactive Programming"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jmacro-rpc-happstack" = callPackage @@ -165912,7 +165023,6 @@ self: { testHaskellDepends = [ base casing free jmacro ]; description = "Jmonkey is very restricted but handy EDSL for JavaScript"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "jni" = callPackage @@ -166040,8 +165150,6 @@ self: { ]; description = "Trying to compose non-composable"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "jonathanscard" = callPackage @@ -166293,6 +165401,8 @@ self: { pname = "jose-jwt"; version = "0.9.4"; sha256 = "1drdlxbhbac3b6ph2l969vvicmg1yww9yhz3pd9maq7pdajbpjcc"; + revision = "1"; + editedCabalFile = "1xhkdmfsl2wwkjk384gy6bwp2bhncdjgqvncdnzpx9b801v67f3c"; libraryHaskellDepends = [ aeson attoparsec base bytestring cereal containers cryptonite memory mtl text time transformers transformers-compat @@ -166323,6 +165433,7 @@ self: { ]; description = "Tiny markdown notebook"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; mainProgram = "jot"; }) {}; @@ -166339,6 +165450,8 @@ self: { testHaskellDepends = [ base hspec ]; description = "Transform Joy code using conditional rewrite rules"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jpeg" = callPackage @@ -166484,6 +165597,8 @@ self: { ]; description = "Interface for JavaScript that works with GHCJS and GHC"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jsaddle-dom" = callPackage @@ -166520,6 +165635,7 @@ self: { description = "JSaddle Hello World, an example package"; license = lib.licenses.mit; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "jsaddle-warp" = callPackage @@ -166546,6 +165662,8 @@ self: { ]; description = "Interface for JavaScript that works with GHCJS and GHC"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jsaddle-webkit2gtk" = callPackage @@ -166866,6 +165984,8 @@ self: { benchmarkHaskellDepends = [ aeson criterion rebase ]; description = "Direct-to-bytes JSON Builder"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "json-directory" = callPackage @@ -167647,8 +166767,8 @@ self: { }: mkDerivation { pname = "jsonifier"; - version = "0.2.1.1"; - sha256 = "0wih0m3g2wj06zwl2wbs9y2bfbc593vmh25imy6hki2iq7wwr3l0"; + version = "0.2.1.2"; + sha256 = "0swv5xmns2qqkmb8wc0f9gsbrs81ghfp8jvq0lr7fgam3cbzaibr"; libraryHaskellDepends = [ base bytestring ptr-poker scientific text ]; @@ -167697,8 +166817,6 @@ self: { ]; description = "JsonLogic Evaluation"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "jsonlogic-aeson" = callPackage @@ -167720,6 +166838,7 @@ self: { description = "JsonLogic Aeson Support"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jsonnet" = callPackage @@ -167762,27 +166881,6 @@ self: { }) {}; "jsonpath" = callPackage - ({ mkDerivation, aeson, aeson-casing, attoparsec, base, bytestring - , file-embed, hspec, hspec-attoparsec, hspec-discover, text - , unordered-containers, vector - }: - mkDerivation { - pname = "jsonpath"; - version = "0.2.1.0"; - sha256 = "1d9h6j0xzrpxc56wym9b0sdanpw1v2rcx1sdm49h6iriwwmckb10"; - libraryHaskellDepends = [ - aeson attoparsec base text unordered-containers vector - ]; - testHaskellDepends = [ - aeson aeson-casing attoparsec base bytestring file-embed hspec - hspec-attoparsec text unordered-containers vector - ]; - testToolDepends = [ hspec-discover ]; - description = "Library to parse and execute JSONPath"; - license = lib.licenses.bsd3; - }) {}; - - "jsonpath_0_3_0_0" = callPackage ({ mkDerivation, aeson, aeson-casing, base, bytestring, file-embed , hspec, hspec-discover, hspec-megaparsec, megaparsec, scientific , text, unordered-containers, vector @@ -167801,7 +166899,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Library to parse and execute JSONPath"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "jsonresume" = callPackage @@ -168120,8 +167217,8 @@ self: { }: mkDerivation { pname = "juicy-gcode"; - version = "0.2.0.2"; - sha256 = "1kr59d21825mrfr9370f4z717gf45rcdp8jw7xw3d4mp7ba6r66b"; + version = "0.3.0.0"; + sha256 = "0j2q76fwx93az2yk0pnmzl82npl0305ks2ia7gbxi7k9jwdzbp0i"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -168456,7 +167553,6 @@ self: { description = "Low-level Haskell client library for Apache Kafka 0.7."; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "kafka-client-sync" = callPackage @@ -169099,8 +168195,8 @@ self: { }: mkDerivation { pname = "katip-wai"; - version = "0.1.2.0"; - sha256 = "10chkrjjh6ja6bil3s12hm7mfgi1j1idq490h5iqs1y3am44bda1"; + version = "0.1.2.1"; + sha256 = "1shzmjpz043fglvn4niydbjf3a41bmx2dhyp7ch5g256irqs4a21"; libraryHaskellDepends = [ aeson base bytestring clock http-types katip network text uuid wai ]; @@ -169431,6 +168527,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "keenser-exe"; + broken = true; }) {}; "keep-alive" = callPackage @@ -169470,7 +168567,6 @@ self: { ]; description = "Rapid Gtk Application Development - I18N"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "keera-hails-mvc-controller" = callPackage @@ -169812,8 +168908,8 @@ self: { }: mkDerivation { pname = "keid-core"; - version = "0.1.7.1"; - sha256 = "0izq63b4ii7gc36qs26y87rr19y4sh1l4cw26bqwdyvdndmmsq90"; + version = "0.1.7.2"; + sha256 = "06abgzc7h6h0xsgrv3b1n2krb2axb7svg00l0rz5k2qs3bz26kfd"; libraryHaskellDepends = [ base binary bytestring containers cryptohash-md5 derive-storable derive-storable-plugin file-embed foldl geomancy GLFW-b ktx-codec @@ -170017,7 +169113,6 @@ self: { description = "Manage and abstract your packer configurations"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "kesha" = callPackage @@ -170214,6 +169309,79 @@ self: { broken = true; }) {}; + "keyed-vals" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, http-api-data + , redis-glob, text + }: + mkDerivation { + pname = "keyed-vals"; + version = "0.2.0.0"; + sha256 = "0im4wn7m5y6kmi8cjxfn72316zldg9v92fbw6hlimc7hkndb34mf"; + libraryHaskellDepends = [ + aeson base bytestring containers http-api-data redis-glob text + ]; + description = "An abstract Handle for accessing collections in stores like Redis"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "keyed-vals-hspec-tests" = callPackage + ({ mkDerivation, aeson, base, benri-hspec, bytestring, containers + , hspec, http-api-data, keyed-vals, text + }: + mkDerivation { + pname = "keyed-vals-hspec-tests"; + version = "0.2.0.0"; + sha256 = "1pmhd9gjq92gn5z36l6av3hbxq5ynwhzy3igij7wvndx3mkj94hm"; + libraryHaskellDepends = [ + aeson base benri-hspec bytestring containers hspec http-api-data + keyed-vals text + ]; + description = "Validate a keyed-vals Handle"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "keyed-vals-mem" = callPackage + ({ mkDerivation, base, bytestring, containers, hspec, keyed-vals + , keyed-vals-hspec-tests, text, unliftio, unliftio-core + }: + mkDerivation { + pname = "keyed-vals-mem"; + version = "0.2.0.0"; + sha256 = "08zsrwdcqw7ic1l9ygcalyg0k985ck1gal03kw21jlsh3l77942d"; + libraryHaskellDepends = [ + base bytestring containers keyed-vals text unliftio unliftio-core + ]; + testHaskellDepends = [ base hspec keyed-vals-hspec-tests ]; + description = "Implements a keyed-vals Handle using in-process memory"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "keyed-vals-redis" = callPackage + ({ mkDerivation, base, bytestring, containers, hedis, hspec + , hspec-tmp-proc, keyed-vals, keyed-vals-hspec-tests, QuickCheck + , read-env-var, text, tmp-proc-redis, unliftio, unliftio-core + }: + mkDerivation { + pname = "keyed-vals-redis"; + version = "0.2.0.0"; + sha256 = "1fxb1r6c19sslhmml04w7adpqwq1glavm5mfix7iiaxly358jdy6"; + libraryHaskellDepends = [ + base bytestring containers hedis keyed-vals read-env-var text + unliftio unliftio-core + ]; + testHaskellDepends = [ + base bytestring hspec hspec-tmp-proc keyed-vals-hspec-tests + QuickCheck text tmp-proc-redis + ]; + description = "Access Redis using a keyed-vals Handle"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "keylayouts" = callPackage ({ mkDerivation, base, bytestring, containers, text, xeno }: mkDerivation { @@ -170320,8 +169488,6 @@ self: { ]; description = "Managing stores of secret things"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "keyvaluehash" = callPackage @@ -170387,20 +169553,6 @@ self: { }) {}; "ki" = callPackage - ({ mkDerivation, base, containers, stm }: - mkDerivation { - pname = "ki"; - version = "0.2.0.1"; - sha256 = "1nxmgv4kxh2whdsmj659iypf8gfjrqzyxzyzghapg1fmpffjpcyr"; - revision = "1"; - editedCabalFile = "0prk6bq1rw52dc7ydapqklcapl1z6yqz0vnx0fl4cm600pd9salm"; - libraryHaskellDepends = [ base containers stm ]; - testHaskellDepends = [ base stm ]; - description = "A lightweight, structured-concurrency library"; - license = lib.licenses.bsd3; - }) {}; - - "ki_1_0_0_1" = callPackage ({ mkDerivation, base, containers, stm, tasty, tasty-hunit }: mkDerivation { pname = "ki"; @@ -170410,7 +169562,6 @@ self: { testHaskellDepends = [ base stm tasty tasty-hunit ]; description = "A lightweight structured concurrency library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ki-unlifted" = callPackage @@ -170422,8 +169573,6 @@ self: { libraryHaskellDepends = [ base ki unliftio-core ]; description = "A lightweight structured-concurrency library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "kibro" = callPackage @@ -170697,7 +169846,9 @@ self: { ]; description = "K_M,N quadratic programming"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "kmn-programming"; + broken = true; }) {}; "kmonad" = callPackage @@ -171136,39 +170287,6 @@ self: { }: mkDerivation { pname = "krank"; - version = "0.2.3"; - sha256 = "0y78njv85s7mcza541gdax5l9651vm78k78ay42phcfvniv82hgx"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring containers http-client http-types - lifted-async mtl pcre-heavy pretty-terminal PyF req safe-exceptions - text unordered-containers - ]; - executableHaskellDepends = [ - base containers mtl optparse-applicative pcre-heavy pretty-terminal - process PyF text - ]; - testHaskellDepends = [ - aeson base bytestring containers hspec hspec-expectations - http-client http-types lifted-async mtl pcre-heavy pretty-terminal - PyF req safe-exceptions text unordered-containers - ]; - description = "Krank checks issue tracker link status in your source code"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - mainProgram = "krank"; - broken = true; - }) {}; - - "krank_0_3_0" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, hspec - , hspec-expectations, http-client, http-types, lifted-async, mtl - , optparse-applicative, pcre-heavy, pretty-terminal, process, PyF - , req, safe-exceptions, text, unordered-containers - }: - mkDerivation { - pname = "krank"; version = "0.3.0"; sha256 = "01ncfknvm4mndzam3q9m15p51cz8cwjds12zc74rl1p49rdp5pis"; isLibrary = true; @@ -171189,9 +170307,7 @@ self: { ]; description = "Krank checks issue tracker link status in your source code"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "krank"; - broken = true; }) {}; "krapsh" = callPackage @@ -171489,7 +170605,6 @@ self: { ]; description = "Key/Value Indexed Table container and formatting library"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; }) {}; "kyotocabinet" = callPackage @@ -172012,8 +171127,10 @@ self: { }: mkDerivation { pname = "lambdabot"; - version = "5.3.0.2"; - sha256 = "0c5qwgzisvqxlyh378bbnabb9lbinknwvcf46sjpm6355krcw3g7"; + version = "5.3.1"; + sha256 = "0fznnbjrk5m6g0jd65ngmckqcgnn87hs30mxqfkncqbqp86s3zyd"; + revision = "2"; + editedCabalFile = "0q7sb9man3zxgaajm8vy59ld0xsb5vzjai8vb8rnljxdkgsy4i5j"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -172033,23 +171150,23 @@ self: { , dependent-map, dependent-sum, dependent-sum-template, directory , edit-distance, exceptions, filepath, haskeline, hslogger, HTTP , lifted-base, monad-control, mtl, network, network-bsd, parsec - , prim-uniq, random, random-fu, random-source, regex-tdfa - , SafeSemaphore, split, syb, template-haskell, time, transformers - , transformers-base, unix, utf8-string, zlib + , prim-uniq, random, random-fu, regex-tdfa, SafeSemaphore, split + , syb, template-haskell, time, transformers, transformers-base + , unix, utf8-string, zlib }: mkDerivation { pname = "lambdabot-core"; - version = "5.3.0.2"; - sha256 = "1i375kiw98j5gd4pixh59lcqk0lakwmrgxzpkr0431a48kxffq7r"; - revision = "1"; - editedCabalFile = "1kydr2sis2r7vr313n6cy5rh2bpnci7zfmrbmxd6ih67f0x8aa3q"; + version = "5.3.1"; + sha256 = "1hiq1wh60cprx49y1178rwsw8dcflzx10g2ivi77d4qxyiawljph"; + revision = "2"; + editedCabalFile = "0cp2aldnqxd74l4ggxm523shfyvh864zvp6v0d0zyry5jrx7zyfr"; libraryHaskellDepends = [ base binary bytestring containers dependent-map dependent-sum dependent-sum-template directory edit-distance exceptions filepath haskeline hslogger HTTP lifted-base monad-control mtl network - network-bsd parsec prim-uniq random random-fu random-source - regex-tdfa SafeSemaphore split syb template-haskell time - transformers transformers-base unix utf8-string zlib + network-bsd parsec prim-uniq random random-fu regex-tdfa + SafeSemaphore split syb template-haskell time transformers + transformers-base unix utf8-string zlib ]; description = "Lambdabot core functionality"; license = "GPL"; @@ -172060,21 +171177,23 @@ self: { , data-memocombinators, directory, filepath , haskell-src-exts-simple, hoogle, HTTP, IOSpec, lambdabot-core , lambdabot-reference-plugins, lambdabot-trusted, lifted-base - , logict, MonadRandom, mtl, mueval, network, numbers, oeis, parsec - , pretty, process, QuickCheck, regex-tdfa, show, split, syb - , transformers, utf8-string, vector-space + , logict, mtl, mueval, network, numbers, oeis, parsec, pretty + , process, QuickCheck, regex-tdfa, show, split, syb, transformers + , utf8-string, vector-space }: mkDerivation { pname = "lambdabot-haskell-plugins"; - version = "5.3.0.2"; - sha256 = "1h2f86dw3356n66n1nfcqi5hsnj6kvlc1px8s4nrw3zvjlkangzq"; + version = "5.3.1"; + sha256 = "05xja5xamvl61xc09fyijmv0sylfd3aaii3p410xa34msglsyssd"; + revision = "2"; + editedCabalFile = "15filg6s0xhizffmhx7ca220930d2xjqvmfaafcrl7vpn3dcrgbl"; libraryHaskellDepends = [ array arrows base bytestring containers data-memocombinators directory filepath haskell-src-exts-simple hoogle HTTP IOSpec lambdabot-core lambdabot-reference-plugins lambdabot-trusted - lifted-base logict MonadRandom mtl mueval network numbers oeis - parsec pretty process QuickCheck regex-tdfa show split syb - transformers utf8-string vector-space + lifted-base logict mtl mueval network numbers oeis parsec pretty + process QuickCheck regex-tdfa show split syb transformers + utf8-string vector-space ]; description = "Lambdabot Haskell plugins"; license = "GPL"; @@ -172087,8 +171206,10 @@ self: { }: mkDerivation { pname = "lambdabot-irc-plugins"; - version = "5.3.0.2"; - sha256 = "1pwl77dh474sqvhd4nfqcqvzicz36xww13sw49qs5wd2fkp50zqi"; + version = "5.3.1"; + sha256 = "0fcbp39vm05g6sjjmxmdxflia5n0yckai0chqqkk1g01khb4pkjy"; + revision = "2"; + editedCabalFile = "17kg3vac8jiciwygzxdws3bskiwlxfm41hbqn8wm0hcz0l9h4ss0"; libraryHaskellDepends = [ base bytestring containers directory filepath lambdabot-core lifted-base mtl network SafeSemaphore split time @@ -172100,19 +171221,21 @@ self: { "lambdabot-misc-plugins" = callPackage ({ mkDerivation, base, bytestring, containers, filepath , lambdabot-core, lifted-base, mtl, network, network-uri, parsec - , process, random, random-fu, random-source, regex-tdfa - , SafeSemaphore, split, tagsoup, template-haskell, time - , transformers, transformers-base, unix, utf8-string, zlib + , process, regex-tdfa, SafeSemaphore, split, tagsoup + , template-haskell, time, transformers, transformers-base, unix + , utf8-string, zlib }: mkDerivation { pname = "lambdabot-misc-plugins"; - version = "5.3.0.2"; - sha256 = "0m2rarvcmmas78ghzvzjf1flicj2sf4d14i7y5cxfpc5l3zcyqwq"; + version = "5.3.1"; + sha256 = "01dq0lxr7cbnh6bzlk5cndqif44q1sw2azqimz43gaplpqbnavl6"; + revision = "2"; + editedCabalFile = "188l0yj672dbdssfafnlz4jybyd1d1i7yb3j66v483b5m09m0f2x"; libraryHaskellDepends = [ base bytestring containers filepath lambdabot-core lifted-base mtl - network network-uri parsec process random random-fu random-source - regex-tdfa SafeSemaphore split tagsoup template-haskell time - transformers transformers-base unix utf8-string zlib + network network-uri parsec process regex-tdfa SafeSemaphore split + tagsoup template-haskell time transformers transformers-base unix + utf8-string zlib ]; description = "Lambdabot miscellaneous plugins"; license = "GPL"; @@ -172120,16 +171243,19 @@ self: { "lambdabot-novelty-plugins" = callPackage ({ mkDerivation, base, binary, brainfuck, bytestring, containers - , dice, directory, lambdabot-core, misfortune, process, random-fu - , regex-tdfa, unlambda + , dice, directory, lambdabot-core, misfortune, process, random + , random-fu, regex-tdfa, unlambda }: mkDerivation { pname = "lambdabot-novelty-plugins"; - version = "5.3.0.2"; - sha256 = "09rqshkh1k7536b9zw4rga370l35v47vf28xdlnrh7knwh88yr70"; + version = "5.3.1"; + sha256 = "0v851nxpxr90agfyh9nx44f1r310fs93y2gji4a7x1synb786rnw"; + revision = "2"; + editedCabalFile = "1m500jq122wml8cp398szd7m9bya4fw5yg2fcv349fdz32wr18hd"; libraryHaskellDepends = [ base binary brainfuck bytestring containers dice directory - lambdabot-core misfortune process random-fu regex-tdfa unlambda + lambdabot-core misfortune process random random-fu regex-tdfa + unlambda ]; description = "Novelty plugins for Lambdabot"; license = "GPL"; @@ -172142,8 +171268,10 @@ self: { }: mkDerivation { pname = "lambdabot-reference-plugins"; - version = "5.3.0.2"; - sha256 = "1n9r29gmllmad2nr83gnbafka7gp99qji1pj0hhcr7gb31asz2xl"; + version = "5.3.1"; + sha256 = "16zp4mpp77778i8vkcr58nr3xg2rnfdlm5ap0sdrqqfx51bs8ybq"; + revision = "2"; + editedCabalFile = "1c65bw5q7gap9n1rlxv0y988fd7srzkdzz0m2x6b70kfkj19ha7m"; libraryHaskellDepends = [ base bytestring containers HTTP lambdabot-core mtl network network-uri oeis process regex-tdfa split tagsoup utf8-string @@ -172158,8 +171286,10 @@ self: { }: mkDerivation { pname = "lambdabot-social-plugins"; - version = "5.3.0.2"; - sha256 = "10yl1z562cnnx0ml343c7psaw5zsil66zrbsgvij6cy2b2p2d3m2"; + version = "5.3.1"; + sha256 = "0d8hc34hky8br53yj15qchbkm796d7x9zhhm8bq9h4rn1a2zfmdz"; + revision = "2"; + editedCabalFile = "1gk4qmjzizxk4qzc3kvq36p515my2cf6vybhnb2zaxpnckg9v68k"; libraryHaskellDepends = [ base binary bytestring containers lambdabot-core mtl split time ]; @@ -172191,17 +171321,15 @@ self: { ]; description = "Lambdabot for Telegram"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "telegram-lambdabot"; - broken = true; }) {}; "lambdabot-trusted" = callPackage ({ mkDerivation, base, oeis, QuickCheck, QuickCheck-safe }: mkDerivation { pname = "lambdabot-trusted"; - version = "5.3.0.2"; - sha256 = "1mwgamd75llraiafk7s43j6qz495j96s1dprckrisww37gv3nn8d"; + version = "5.3.1"; + sha256 = "03wmk7l7krb51zql2qxf805ww0gndbgysfw0fgm3pzd98j7bfimh"; libraryHaskellDepends = [ base oeis QuickCheck QuickCheck-safe ]; description = "Lambdabot trusted code"; license = "GPL"; @@ -172569,6 +171697,7 @@ self: { description = "Lambdabot running as a twitter bot. Similar to the @fsibot f# bot."; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lambdaya-bus" = callPackage @@ -172692,7 +171821,6 @@ self: { description = "Haskell bindings for the Linux Landlock API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lang" = callPackage @@ -172821,7 +171949,6 @@ self: { ]; description = "Language definition and parser for AVRO files"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "language-bash" = callPackage @@ -173098,28 +172225,6 @@ self: { mainProgram = "emd"; }) {}; - "language-docker" = callPackage - ({ mkDerivation, base, bytestring, containers, data-default-class - , hspec, hspec-megaparsec, HUnit, megaparsec, prettyprinter - , QuickCheck, split, text, time - }: - mkDerivation { - pname = "language-docker"; - version = "10.4.3"; - sha256 = "0s3grrz3n0fvxh7qn4gfaw1m194zd2s4zjqhzar8kr783yw3rr1k"; - libraryHaskellDepends = [ - base bytestring containers data-default-class megaparsec - prettyprinter split text time - ]; - testHaskellDepends = [ - base bytestring containers data-default-class hspec - hspec-megaparsec HUnit megaparsec prettyprinter QuickCheck split - text time - ]; - description = "Dockerfile parser, pretty-printer and embedded DSL"; - license = lib.licenses.gpl3Only; - }) {}; - "language-docker_11_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, data-default , data-default-class, hspec, hspec-megaparsec, HUnit, megaparsec @@ -173143,7 +172248,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "language-docker_12_0_0" = callPackage + "language-docker" = callPackage ({ mkDerivation, base, bytestring, containers, data-default , data-default-class, hspec, hspec-megaparsec, HUnit, megaparsec , prettyprinter, QuickCheck, split, text, time @@ -173163,7 +172268,6 @@ self: { ]; description = "Dockerfile parser, pretty-printer and embedded DSL"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "language-dockerfile" = callPackage @@ -173235,8 +172339,6 @@ self: { ]; description = "JavaScript parser and pretty-printer library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "language-ecmascript-analysis" = callPackage @@ -173252,7 +172354,6 @@ self: { ]; description = "JavaScript static analysis library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "language-eiffel" = callPackage @@ -173304,6 +172405,8 @@ self: { libraryToolDepends = [ alex happy ]; description = "Fortran lexer and parser, language support, and extensions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "language-gcl" = callPackage @@ -173513,6 +172616,8 @@ self: { testHaskellDepends = [ base hspec parsec ]; description = "javascript parser for es6 and es7"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "language-kort" = callPackage @@ -173679,7 +172784,7 @@ self: { ]; description = "Data types and functions to represent the Nix language"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "language-oberon" = callPackage @@ -174169,6 +173274,8 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq QuickCheck ]; description = "Matrix programming library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lapack" = callPackage @@ -174199,6 +173306,7 @@ self: { ]; description = "Numerical Linear Algebra using LAPACK"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "lapack-carray" = callPackage @@ -174231,6 +173339,7 @@ self: { ]; description = "Auto-generated interface to Fortran LAPACK via comfort-array"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "lapack-ffi" = callPackage @@ -174255,6 +173364,8 @@ self: { pname = "lapack-ffi-tools"; version = "0.1.3"; sha256 = "0qk5a43w8xn8pp9bhmjmjyvriiin2dyf4nvk13w858hsxyx6xqkx"; + revision = "1"; + editedCabalFile = "15w2ml6iqwk7776dl9m7lg0jp7akw9f8s95flrsjfxr479qig48i"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -174281,6 +173392,7 @@ self: { ]; description = "Conversion of objects between 'lapack' and 'hmatrix'"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "large-anon" = callPackage @@ -174648,8 +173760,8 @@ self: { }) {}; "lattices" = callPackage - ({ mkDerivation, base, base-compat, containers, deepseq, ghc-prim - , hashable, integer-logarithms, QuickCheck, quickcheck-instances + ({ mkDerivation, base, base-compat, containers, deepseq, hashable + , integer-logarithms, QuickCheck, quickcheck-instances , semigroupoids, tagged, tasty, tasty-quickcheck, transformers , universe-base, universe-reverse-instances, unordered-containers }: @@ -174660,9 +173772,9 @@ self: { revision = "4"; editedCabalFile = "0nkcdqb3gsp1lqpj7hv4knndj7p258j0cp4cbqx7jixc93gkq044"; libraryHaskellDepends = [ - base base-compat containers deepseq ghc-prim hashable - integer-logarithms QuickCheck semigroupoids tagged transformers - universe-base universe-reverse-instances unordered-containers + base base-compat containers deepseq hashable integer-logarithms + QuickCheck semigroupoids tagged transformers universe-base + universe-reverse-instances unordered-containers ]; testHaskellDepends = [ base base-compat containers QuickCheck quickcheck-instances tasty @@ -174701,6 +173813,8 @@ self: { ]; description = "Server-side SDK for integrating with LaunchDarkly"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "launchpad-control" = callPackage @@ -174952,8 +174066,6 @@ self: { testHaskellDepends = [ base doctest exceptions tasty tasty-hunit ]; description = "A bracket with lazy resource allocation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lazy-csv" = callPackage @@ -175215,7 +174327,6 @@ self: { description = "Online Latent Dirichlet Allocation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ldap-client" = callPackage @@ -175539,6 +174650,7 @@ self: { ]; description = "Haskell code for learning physics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "learn-physics-examples" = callPackage @@ -175557,7 +174669,6 @@ self: { description = "examples for learn-physics"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "learning-hmm" = callPackage @@ -175574,7 +174685,6 @@ self: { description = "Yet another library for hidden Markov models"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "leb128" = callPackage @@ -175862,10 +174972,10 @@ self: { }: mkDerivation { pname = "lens"; - version = "5.0.1"; - sha256 = "0gzwx4b758phm51hz5i4bbkbvjw1ka7qj04zd9l9sh9n6s9ksm7c"; - revision = "3"; - editedCabalFile = "17qmk274b88k4ivhnkc6600djhh9d7pr4s1xhzi3ln2cspj5gvb3"; + version = "5.1.1"; + sha256 = "08mkm2mjvhmwg9hc4kd4cd6dgmcszs1p2mzp1nmri7lqbpy9jknc"; + revision = "1"; + editedCabalFile = "19z3k7ikpfa96b86yabxghfqpnq9d0ayy4gdlvci3ycvws0s8cy6"; libraryHaskellDepends = [ array assoc base base-orphans bifunctors bytestring call-stack comonad containers contravariant distributive exceptions filepath @@ -175957,7 +175067,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "lens-aeson" = callPackage + "lens-aeson_1_1_3" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, lens , scientific, text, unordered-containers, vector }: @@ -175973,9 +175083,10 @@ self: { ]; description = "Law-abiding lenses for aeson"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; - "lens-aeson_1_2_2" = callPackage + "lens-aeson" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, lens , scientific, text, text-short, unordered-containers, vector }: @@ -175989,7 +175100,6 @@ self: { ]; description = "Law-abiding lenses for aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "lens-core" = callPackage @@ -176266,6 +175376,8 @@ self: { libraryHaskellDepends = [ base lens tell ]; description = "MonadTell-based lens combinators"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lens-text-encoding" = callPackage @@ -176374,6 +175486,17 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "lens-witherable" = callPackage + ({ mkDerivation, base, witherable }: + mkDerivation { + pname = "lens-witherable"; + version = "0.1.0.2"; + sha256 = "0n00njfd9zcfgrkwajm1h1mvzgblykzn89whca2xwwqspf7f57kd"; + libraryHaskellDepends = [ base witherable ]; + description = "lens-compatible tools for working with witherable"; + license = lib.licenses.mit; + }) {}; + "lens-xml" = callPackage ({ mkDerivation, base, lens, xml }: mkDerivation { @@ -176421,16 +175544,14 @@ self: { "lentil" = callPackage ({ mkDerivation, ansi-wl-pprint, base, csv, deepseq, directory - , dlist, filemanip, filepath, hspec, megaparsec, mtl, natural-sort - , optparse-applicative, regex-tdfa, semigroups + , dlist, filemanip, filepath, hspec, hspec-discover, megaparsec + , mtl, natural-sort, optparse-applicative, regex-tdfa, semigroups , terminal-progress-bar, text }: mkDerivation { pname = "lentil"; - version = "1.5.4.0"; - sha256 = "0xfsf7g9r2w30qkp4829w77hsja562jvx4n9i880j9qngi2ms2h1"; - revision = "2"; - editedCabalFile = "1n88rdsf5ayprgz1wnbx32gaff8kpixfkdkr6q4jvc896fhrhdzp"; + version = "1.5.4.2"; + sha256 = "198ajay44aapyn8zw3416lhv7wdkb8p6y3a77w2m3p9ly9sj5hgc"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -176443,6 +175564,7 @@ self: { hspec megaparsec mtl natural-sort optparse-applicative regex-tdfa semigroups terminal-progress-bar text ]; + testToolDepends = [ hspec-discover ]; description = "frugal issue tracker"; license = lib.licenses.gpl3Only; mainProgram = "lentil"; @@ -176464,7 +175586,6 @@ self: { ]; description = "Van Laarhoven lenses"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "lenz-mtl" = callPackage @@ -176482,7 +175603,6 @@ self: { ]; description = "mtl operations with Van Laarhoven lenses"; license = "unknown"; - hydraPlatforms = lib.platforms.none; }) {}; "lenz-template" = callPackage @@ -176501,6 +175621,7 @@ self: { description = "Van Laarhoven lens templates"; license = "unknown"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "less-arbitrary" = callPackage @@ -176992,19 +176113,6 @@ self: { }) {inherit (pkgs) expect; inherit (pkgs) tcl;}; "libffi" = callPackage - ({ mkDerivation, base, bytestring, ffi, libffi }: - mkDerivation { - pname = "libffi"; - version = "0.1"; - sha256 = "0g7jnhng3j7z5517aaqga0144aamibsbpgm3yynwyfzkq1kp0f28"; - libraryHaskellDepends = [ base bytestring ]; - librarySystemDepends = [ ffi ]; - libraryPkgconfigDepends = [ libffi ]; - description = "A binding to libffi"; - license = lib.licenses.bsd3; - }) {ffi = null; inherit (pkgs) libffi;}; - - "libffi_0_2_1" = callPackage ({ mkDerivation, base, bytestring }: mkDerivation { pname = "libffi"; @@ -177013,7 +176121,6 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "A binding to libffi"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "libffi-dynamic" = callPackage @@ -177496,7 +176603,6 @@ self: { description = "Wrapper for libpafe"; license = lib.licenses.gpl2Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {pafe = null;}; "libpq" = callPackage @@ -177601,9 +176707,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Move/rename according a set of rules"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; mainProgram = "librarian"; - broken = true; }) {}; "librato" = callPackage @@ -177704,8 +176808,6 @@ self: { ]; description = "Bindings for secp256k1"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) secp256k1;}; "libsodium" = callPackage @@ -177820,8 +176922,6 @@ self: { description = "Haskell bindings to libsystemd-journal"; license = lib.licenses.bsd3; badPlatforms = lib.platforms.darwin; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) systemd;}; "libtagc" = callPackage @@ -178171,8 +177271,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "lift-type"; - version = "0.1.0.1"; - sha256 = "1195iyf0s8zmibjmvd10bszyccp1a2g4wdysn7yk10d3j0q9xdxf"; + version = "0.1.1.1"; + sha256 = "039psym2ghkydk4qyycs3cxndrf85ab5hwzrqv0ajxcilqr11n0h"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base template-haskell ]; description = "Lift a type from a Typeable constraint to a Template Haskell type"; @@ -178331,8 +177431,6 @@ self: { ]; description = "LIFX LAN API"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ligature" = callPackage @@ -178656,8 +177754,8 @@ self: { ({ mkDerivation, base, hspec, QuickCheck }: mkDerivation { pname = "line-drawing"; - version = "0.4.0.0"; - sha256 = "0f0dj3hr1b9vryrmd88ghhn0jrv3nn5yhl5kj1bwwl99z59ww7bp"; + version = "0.4.0.1"; + sha256 = "19jyfp5cm5yzsvrjxk0yd5j46j6jk56v94xi7na97ghxqbvaascl"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "raster line drawing"; @@ -178722,6 +177820,33 @@ self: { license = lib.licenses.bsd3; }) {}; + "linear_1_22" = callPackage + ({ mkDerivation, adjunctions, base, base-orphans, binary, bytes + , bytestring, cereal, containers, deepseq, distributive, ghc-prim + , hashable, HUnit, indexed-traversable, lens, random, reflection + , semigroupoids, simple-reflect, tagged, template-haskell + , test-framework, test-framework-hunit, transformers + , transformers-compat, unordered-containers, vector, void + }: + mkDerivation { + pname = "linear"; + version = "1.22"; + sha256 = "1ddr0c54kbi9bw7d62i6h3jiss3q0qmrdpkvckajz6qf5lwkxr6g"; + libraryHaskellDepends = [ + adjunctions base base-orphans binary bytes cereal containers + deepseq distributive ghc-prim hashable indexed-traversable lens + random reflection semigroupoids tagged template-haskell + transformers transformers-compat unordered-containers vector void + ]; + testHaskellDepends = [ + base binary bytestring deepseq HUnit reflection simple-reflect + test-framework test-framework-hunit vector + ]; + description = "Linear Algebra"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "linear-accelerate" = callPackage ({ mkDerivation, accelerate, base, Cabal, cabal-doctest , distributive, doctest, lens, linear @@ -178765,32 +177890,6 @@ self: { "linear-base" = callPackage ({ mkDerivation, base, containers, deepseq, gauge, ghc-prim - , hashable, hashtables, hedgehog, mmorph, primitive, random - , random-shuffle, storable-tuple, tasty, tasty-hedgehog, text - , transformers, unordered-containers, vector - }: - mkDerivation { - pname = "linear-base"; - version = "0.1.0"; - sha256 = "00n7rmvkjg42n1pba1y1lziw9a8gyhix15rw13qsyymi8bdr8k82"; - libraryHaskellDepends = [ - base containers ghc-prim hashable primitive storable-tuple text - transformers vector - ]; - testHaskellDepends = [ - base containers hedgehog mmorph storable-tuple tasty tasty-hedgehog - text vector - ]; - benchmarkHaskellDepends = [ - base deepseq gauge hashable hashtables random random-shuffle - unordered-containers - ]; - description = "Standard library for linear types"; - license = lib.licenses.mit; - }) {}; - - "linear-base_0_3_0" = callPackage - ({ mkDerivation, base, containers, deepseq, gauge, ghc-prim , hashable, hashtables, hedgehog, inspection-testing , linear-generics, mmorph, MonadRandom, primitive, random , random-shuffle, storable-tuple, tasty, tasty-hedgehog @@ -178816,7 +177915,6 @@ self: { ]; description = "Standard library for linear types"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "linear-circuit" = callPackage @@ -178838,6 +177936,7 @@ self: { ]; description = "Compute resistance of linear electrical circuits"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "linear-code" = callPackage @@ -178992,6 +178091,7 @@ self: { description = "Use SMT solvers to solve linear systems over integers and rationals"; license = lib.licenses.bsd3; badPlatforms = [ "aarch64-linux" ]; + hydraPlatforms = lib.platforms.none; }) {}; "linearmap-category" = callPackage @@ -179062,10 +178162,8 @@ self: { ({ mkDerivation, base, hspec, hyphenation }: mkDerivation { pname = "linebreak"; - version = "1.1.0.1"; - sha256 = "11vqz7zv8ihvhbyma9j6pvxainxfg4kml9fylfjy9jpfvilxq5vq"; - revision = "1"; - editedCabalFile = "0pg3r5zvb13sfyhskyadllxpd2l7xvzvjj8r8rvlq248riq78qdc"; + version = "1.1.0.2"; + sha256 = "0i2b7a9f29iyr98x7j2wcagdwxl79rljamch4893vg2syca3h4f5"; libraryHaskellDepends = [ base hyphenation ]; testHaskellDepends = [ base hspec hyphenation ]; description = "breaks strings to fit width"; @@ -179304,6 +178402,8 @@ self: { ]; description = "Lightweight library for building HTTP API"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "linnet-aeson" = callPackage @@ -179321,6 +178421,7 @@ self: { ]; description = "Aeson JSON support for Linnet"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "linnet-conduit" = callPackage @@ -179341,6 +178442,7 @@ self: { ]; description = "Conduit-backed support for streaming in Linnet"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "linode" = callPackage @@ -179438,6 +178540,8 @@ self: { description = "Bindings to Linux evdev input device interface"; license = lib.licenses.bsd3; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "linux-file-extents" = callPackage @@ -179566,6 +178670,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "Read, set and list extended attributes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "linx-gateway" = callPackage @@ -179627,6 +178733,8 @@ self: { pname = "lio-fs"; version = "0.0.1.2"; sha256 = "1zzxsr0kg3bxm2wzhsqw2irk5myzshgqhr3fxi062hzw2rh0nqn9"; + revision = "1"; + editedCabalFile = "1vwdsizbk7h0l10fsn8bql60yc8w5vy7fr0x0z9md6rpmsyfxrr2"; libraryHaskellDepends = [ base bytestring containers directory filepath lio SHA unix xattr ]; @@ -179677,7 +178785,6 @@ self: { description = "RISC-V Core"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lipsum-gen" = callPackage @@ -180101,9 +179208,7 @@ self: { ]; description = "List all remote forwards for mail accounts stored in a SQL database"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "list-remote-forwards"; - broken = true; }) {}; "list-singleton" = callPackage @@ -180209,6 +179314,8 @@ self: { ]; description = "A \"libcurl\"-based streaming HTTP client"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "list-t-text" = callPackage @@ -180540,22 +179647,6 @@ self: { }) {}; "little-rio" = callPackage - ({ mkDerivation, base, deepseq, exceptions, microlens - , microlens-mtl, mtl, primitive, resourcet, unliftio-core - }: - mkDerivation { - pname = "little-rio"; - version = "0.2.2"; - sha256 = "1cbadsbhhgls6p46gga4l32b0fhmvp6r9mycaj2srsfdcnwkydr9"; - libraryHaskellDepends = [ - base deepseq exceptions microlens microlens-mtl mtl primitive - resourcet unliftio-core - ]; - description = "When you need just the RIO monad"; - license = lib.licenses.bsd3; - }) {}; - - "little-rio_1_0_1" = callPackage ({ mkDerivation, base, deepseq, exceptions, little-logger , microlens, microlens-mtl, mtl, primitive, resourcet , unliftio-core @@ -180570,7 +179661,6 @@ self: { ]; description = "When you need just the RIO monad"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "live-sequencer" = callPackage @@ -181191,8 +180281,6 @@ self: { ]; description = "Higher level API for working with LMDB"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lmdb-simple" = callPackage @@ -181208,6 +180296,8 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Simple API for LMDB"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lmonad" = callPackage @@ -181305,6 +180395,7 @@ self: { description = "Support for developing against the LNURL protocol"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lnurl-authenticator" = callPackage @@ -181390,20 +180481,6 @@ self: { }) {}; "loc" = callPackage - ({ mkDerivation, base, containers, doctest, hedgehog }: - mkDerivation { - pname = "loc"; - version = "0.1.3.16"; - sha256 = "0bizqfczhc5higdzrrhinr5q3s971a3klfl3gpffnq9gyzd16nrq"; - revision = "2"; - editedCabalFile = "18fwdgf8l6nrnijla1x5c50ab05snaza27qdkya07sis2fa8286c"; - libraryHaskellDepends = [ base containers ]; - testHaskellDepends = [ base containers doctest hedgehog ]; - description = "Types representing line and column positions and ranges in text files"; - license = lib.licenses.asl20; - }) {}; - - "loc_0_1_4_0" = callPackage ({ mkDerivation, base, containers, hedgehog, hspec, hspec-hedgehog }: mkDerivation { @@ -181418,7 +180495,6 @@ self: { ]; description = "Types representing line and column positions and ranges in text files"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "loc-test" = callPackage @@ -181430,8 +180506,6 @@ self: { libraryHaskellDepends = [ base containers hedgehog loc ]; description = "Test-related utilities related to the /loc/ package"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "local-address" = callPackage @@ -181696,6 +180770,8 @@ self: { ]; description = "Structured logging solution (base package)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "log-domain" = callPackage @@ -181736,7 +180812,9 @@ self: { ]; description = "An extensible log effect using extensible-effects"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "log-example"; + broken = true; }) {}; "log-effect-syslog" = callPackage @@ -181753,6 +180831,7 @@ self: { ]; description = "Syslog functions for log-effect"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "log-effectful" = callPackage @@ -181766,6 +180845,7 @@ self: { testHaskellDepends = [ aeson base effectful-core log-base text ]; description = "Adaptation of the log library for the effectful ecosystem"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "log-elasticsearch" = callPackage @@ -181786,6 +180866,7 @@ self: { ]; description = "Structured logging solution (Elasticsearch back end)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "log-postgres" = callPackage @@ -182135,7 +181216,6 @@ self: { description = "Journald back-end for logging-facade"; license = lib.licenses.mit; badPlatforms = lib.platforms.darwin; - hydraPlatforms = lib.platforms.none; }) {}; "logging-facade-syslog" = callPackage @@ -182215,20 +181295,6 @@ self: { ({ mkDerivation, async, base, mtl, tasty, tasty-hunit }: mkDerivation { pname = "logict"; - version = "0.7.1.0"; - sha256 = "1d22b7r8lnak5k8ars166cxbk1lv7gf8g0qs604irsx2s474ybi7"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base mtl ]; - testHaskellDepends = [ async base mtl tasty tasty-hunit ]; - description = "A backtracking logic-programming monad"; - license = lib.licenses.bsd3; - }) {}; - - "logict_0_8_0_0" = callPackage - ({ mkDerivation, async, base, mtl, tasty, tasty-hunit }: - mkDerivation { - pname = "logict"; version = "0.8.0.0"; sha256 = "0mpv50ifb3x9vfmgi1p9piwcgz8d19x0wdj789wxyhxwjpr6v4py"; isLibrary = true; @@ -182237,18 +181303,31 @@ self: { testHaskellDepends = [ async base mtl tasty tasty-hunit ]; description = "A backtracking logic-programming monad"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "logict-sequence" = callPackage - ({ mkDerivation, base, logict, mtl, sequence, type-aligned }: + ({ mkDerivation, base, containers, gauge, hedgehog, hedgehog-fn + , hspec, hspec-hedgehog, list-t, logict, mmorph, mtl, sequence + , transformers + }: mkDerivation { pname = "logict-sequence"; - version = "0.1.0.1"; - sha256 = "15cxn5v3afm5688x972vvd6j7d7x889jwdhnlilpy1c2nzfl9w3i"; - libraryHaskellDepends = [ base logict mtl sequence type-aligned ]; + version = "0.2.0.2"; + sha256 = "0875f15rnfya99h5lfjhhx598y7hsssa927j138zk5dhpz0v3b34"; + libraryHaskellDepends = [ + base logict mmorph mtl sequence transformers + ]; + testHaskellDepends = [ + base hedgehog hedgehog-fn hspec hspec-hedgehog logict mmorph mtl + sequence transformers + ]; + benchmarkHaskellDepends = [ + base containers gauge list-t logict mtl + ]; description = "A backtracking logic-programming monad with asymptotic improvements to msplit"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "logict-state" = callPackage @@ -182260,8 +181339,6 @@ self: { libraryHaskellDepends = [ base logict mtl transformers ]; description = "Library for logic programming based on haskell package logict"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "loglevel" = callPackage @@ -182420,7 +181497,6 @@ self: { description = "A library for lattice cryptography"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lol-apps" = callPackage @@ -182646,7 +181722,6 @@ self: { badPlatforms = [ "aarch64-linux" ]; hydraPlatforms = lib.platforms.none; mainProgram = "longshot"; - broken = true; }) {}; "lookup-tables" = callPackage @@ -182950,6 +182025,8 @@ self: { ]; description = "Turning images into text using Braille font"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "loup" = callPackage @@ -183014,8 +182091,6 @@ self: { ]; description = "An EDSL for diagrams based based on linear constraints"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lp-diagrams-svg" = callPackage @@ -183036,6 +182111,7 @@ self: { description = "SVG Backend for lp-diagrams"; license = "GPL"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lpeg" = callPackage @@ -183364,30 +182440,30 @@ self: { ]; description = "Parameterized file evaluator"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "ltext"; }) {}; "lti13" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, file-embed - , hspec, http-client, http-types, jose-jwt, oidc-client, QuickCheck - , safe-exceptions, text, th-utilities + , hspec, hspec-discover, http-client, http-types, jose-jwt + , oidc-client, QuickCheck, safe-exceptions, text, th-utilities }: mkDerivation { pname = "lti13"; - version = "0.2.0.3"; - sha256 = "1ls1hfyivmx5yi9i15m95j9j12agyrmfiwza3w9dfa23c210fcxh"; + version = "0.3.0.0"; + sha256 = "0riwrdpfjq1zpz37g0qw34gbf86amb31zz8n3x1xqsrnj69drc6w"; libraryHaskellDepends = [ aeson base bytestring containers http-client http-types jose-jwt oidc-client safe-exceptions text ]; testHaskellDepends = [ - aeson base bytestring file-embed hspec QuickCheck text th-utilities + aeson base bytestring containers file-embed hspec http-client + http-types jose-jwt oidc-client QuickCheck safe-exceptions text + th-utilities ]; - description = "Core functionality for LTI 1.3."; + testToolDepends = [ hspec-discover ]; + description = "Core functionality for LTI 1.3"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ltiv1p1" = callPackage @@ -183445,20 +182521,6 @@ self: { }) {}; "lua" = callPackage - ({ mkDerivation, base, lua5_3, tasty, tasty-hunit }: - mkDerivation { - pname = "lua"; - version = "2.1.0"; - sha256 = "00fcx1by3b2bjb3sc86azr3gmy9jd1b0gilbz48pkbb7cw4p5z1c"; - configureFlags = [ "-fsystem-lua" "-f-use-pkgconfig" ]; - libraryHaskellDepends = [ base ]; - librarySystemDepends = [ lua5_3 ]; - testHaskellDepends = [ base tasty tasty-hunit ]; - description = "Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {inherit (pkgs) lua5_3;}; - - "lua_2_2_1" = callPackage ({ mkDerivation, base, lua5_4, tasty, tasty-hunit }: mkDerivation { pname = "lua"; @@ -183470,7 +182532,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) lua5_4;}; "lua-arbitrary" = callPackage @@ -183622,6 +182683,8 @@ self: { testHaskellDepends = [ base hspec HUnit lucid ]; description = "Provides ARIA attributes for Lucid templates"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lucid-cdn" = callPackage @@ -183751,8 +182814,6 @@ self: { ]; description = "Clear to write, read and edit DSL for HTML"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lucid2-htmx" = callPackage @@ -183766,6 +182827,7 @@ self: { description = "Use htmx in your lucid templates"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lucienne" = callPackage @@ -184856,9 +183918,7 @@ self: { ]; description = "Monadic DSL for building constraint solvers using basic propagators"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sudoku-exe"; - broken = true; }) {}; "madlang" = callPackage @@ -185017,6 +184077,7 @@ self: { ]; description = "Compute solutions for Magico puzzle"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "magico"; }) {}; @@ -185031,6 +184092,8 @@ self: { testHaskellDepends = [ base ghc-prim ]; description = "magma is an algebraic structure"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "magmas" = callPackage @@ -185415,8 +184478,8 @@ self: { pname = "managed"; version = "1.0.9"; sha256 = "0vx8aim8bcyyvxxnmi1xkbl3kwrvskjn99z3y8h458g7nsinsisd"; - revision = "2"; - editedCabalFile = "1hnhi2d5s06bhp2klf9xw9yipymisfyfvb83b6rqfiy549z6ij27"; + revision = "3"; + editedCabalFile = "017h9533j7rlxlsf65ynxpva59yr0qwrdmvhp7if141i98ld4664"; libraryHaskellDepends = [ base transformers ]; description = "A monad for managed values"; license = lib.licenses.bsd3; @@ -186042,8 +185105,6 @@ self: { ]; description = "A set of classes and instances for working with key/value mappings"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "map-exts" = callPackage @@ -186087,6 +185148,8 @@ self: { ]; description = "foldl wrappers for map-reduce"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "map-syntax" = callPackage @@ -186097,8 +185160,8 @@ self: { pname = "map-syntax"; version = "0.3"; sha256 = "0b3ddi998saw5gi5r4bjbpid03rxlifn08zv15wf0b90ambhcc4k"; - revision = "4"; - editedCabalFile = "09sr3lzgkqs59vnwsimqgv098h3hj4srr2avza3z05gfkvxqj8yw"; + revision = "5"; + editedCabalFile = "0vfrq4gbd07jaz656lrxx7yar8lbgimkvkij52sn6d403wak20cv"; libraryHaskellDepends = [ base containers mtl ]; testHaskellDepends = [ base containers deepseq hspec HUnit mtl QuickCheck transformers @@ -186173,8 +185236,8 @@ self: { ({ mkDerivation, base, tidal }: mkDerivation { pname = "maquinitas-tidal"; - version = "0.2.11"; - sha256 = "1bg0az68jzxkb54rx7zf7bbkdkp5h0aqxyy78d8caaimc5ch2mbv"; + version = "0.2.17"; + sha256 = "1rb72b2p0d61b36d73b0rw6bw7qj125syh3w3b5lr77r8km1np84"; libraryHaskellDepends = [ base tidal ]; description = "library for MIDI control of hardware"; license = lib.licenses.mit; @@ -186419,6 +185482,7 @@ self: { ]; description = "Abstraction for HTML-embedded content"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "markup-preview" = callPackage @@ -186613,7 +185677,6 @@ self: { ]; description = "Markup language preprocessor for Haskell"; license = lib.licenses.gpl2Only; - hydraPlatforms = lib.platforms.none; mainProgram = "marxup"; }) {}; @@ -187451,6 +186514,7 @@ self: { ]; description = "Terminal client for the Mattermost chat system"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "matterhorn"; maintainers = [ lib.maintainers.kiwi ]; }) {}; @@ -187703,7 +186767,9 @@ self: { ]; description = "List contents of an mbox file containing e-mails"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "lsmbox"; + broken = true; }) {}; "mbtiles" = callPackage @@ -187832,32 +186898,6 @@ self: { }) {}; "mcmc" = callPackage - ({ mkDerivation, aeson, async, base, bytestring, circular - , containers, covariance, criterion, data-default, deepseq - , directory, dirichlet, double-conversion, hmatrix, hspec - , log-domain, math-functions, microlens, mwc-random, pretty-show - , primitive, statistics, time, transformers, vector, zlib - }: - mkDerivation { - pname = "mcmc"; - version = "0.6.2.2"; - sha256 = "1si81jv8dfwm9lfq3fvfc4mibkg7p61vkjhsgfsmban74v02ja73"; - libraryHaskellDepends = [ - aeson async base bytestring circular containers covariance - data-default deepseq directory dirichlet double-conversion hmatrix - log-domain math-functions microlens mwc-random pretty-show - primitive statistics time transformers vector zlib - ]; - testHaskellDepends = [ base hspec mwc-random statistics ]; - benchmarkHaskellDepends = [ - base criterion math-functions microlens mwc-random - ]; - description = "Sample from a posterior using Markov chain Monte Carlo"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "mcmc_0_8_0_1" = callPackage ({ mkDerivation, ad, aeson, async, base, bytestring, circular , containers, covariance, criterion, directory, dirichlet , fixed-vector, hmatrix, hspec, log-domain, math-functions @@ -187880,7 +186920,6 @@ self: { ]; description = "Sample from a posterior using Markov chain Monte Carlo"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -188166,7 +187205,6 @@ self: { description = "A schema language for JSON"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mediabus" = callPackage @@ -188440,6 +187478,27 @@ self: { license = lib.licenses.bsd2; }) {}; + "megaparsec_9_3_0" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , criterion, deepseq, mtl, parser-combinators, scientific, text + , transformers, weigh + }: + mkDerivation { + pname = "megaparsec"; + version = "9.3.0"; + sha256 = "01b05s3chlidz48lrwlyffw712vy4hlfijlh4wj9lq0fdy2b1z0r"; + libraryHaskellDepends = [ + base bytestring case-insensitive containers deepseq mtl + parser-combinators scientific text transformers + ]; + benchmarkHaskellDepends = [ + base bytestring containers criterion deepseq text weigh + ]; + description = "Monadic parser combinators"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "megaparsec-tests" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , hspec, hspec-discover, hspec-expectations, hspec-megaparsec @@ -188464,6 +187523,32 @@ self: { license = lib.licenses.bsd2; }) {}; + "megaparsec-tests_9_3_0" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , hspec, hspec-discover, hspec-expectations, hspec-megaparsec + , megaparsec, mtl, parser-combinators, QuickCheck, scientific + , temporary, text, transformers + }: + mkDerivation { + pname = "megaparsec-tests"; + version = "9.3.0"; + sha256 = "1ra1y1gdcxav0xi2djril3l3kb7kvzcjnmxxspmn2nj2921sb0yi"; + libraryHaskellDepends = [ + base bytestring containers hspec hspec-expectations + hspec-megaparsec megaparsec mtl QuickCheck text transformers + ]; + testHaskellDepends = [ + base bytestring case-insensitive containers hspec + hspec-expectations hspec-megaparsec megaparsec mtl + parser-combinators QuickCheck scientific temporary text + transformers + ]; + testToolDepends = [ hspec-discover ]; + description = "Test utilities and the test suite of Megaparsec"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "meldable-heap" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -188506,6 +187591,7 @@ self: { ]; description = "An Elf parser"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "mellon-core" = callPackage @@ -188905,7 +187991,9 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion random ]; description = "Generate human memorable strings from binary data"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; mainProgram = "membits"; + broken = true; }) {}; "memory" = callPackage @@ -188914,10 +188002,10 @@ self: { }: mkDerivation { pname = "memory"; - version = "0.16.0"; - sha256 = "0zzxyr2b7gj92h3jzaq1lfqfyfkfj4l636ry35191i9bp3wa0v8l"; + version = "0.17.0"; + sha256 = "0yl3ivvn7i9wbx910b7bzj9c3g0jjjk91j05wj74qb5zx2yyf9rk"; revision = "1"; - editedCabalFile = "02ql04drvyk8sdadxs4yi1h4aic0pxgnrph3j5ndcm6r7hfnv8py"; + editedCabalFile = "1gybf726kz17jm1am0rphi0srmyqyza45y6jdqbq0b8sspm8kggb"; libraryHaskellDepends = [ base basement bytestring deepseq ghc-prim ]; @@ -189084,6 +188172,8 @@ self: { ]; description = "Haskell binding to Mercury API for ThingMagic RFID readers"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "merge" = callPackage @@ -189160,20 +188250,6 @@ self: { }) {}; "mergeless" = callPackage - ({ mkDerivation, aeson, base, containers, deepseq, mtl, validity - , validity-containers - }: - mkDerivation { - pname = "mergeless"; - version = "0.3.0.0"; - sha256 = "14kgfh672fywvrjzb9kzhrnw10lxq44216rwniavn68abkg6yx94"; - libraryHaskellDepends = [ - aeson base containers deepseq mtl validity validity-containers - ]; - license = lib.licenses.mit; - }) {}; - - "mergeless_0_4_0_0" = callPackage ({ mkDerivation, aeson, autodocodec, base, containers, deepseq, mtl , text, validity, validity-containers }: @@ -189186,7 +188262,6 @@ self: { validity-containers ]; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "mergeless-persistent" = callPackage @@ -189894,6 +188969,8 @@ self: { doHaddock = false; description = "A minimal base to work around GHC bugs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "microbench" = callPackage @@ -189951,6 +189028,8 @@ self: { ]; description = "A Microformats 2 parser"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "microformats2-types" = callPackage @@ -189995,12 +189074,12 @@ self: { license = lib.licenses.bsd3; }) {}; - "microlens_0_4_13_0" = callPackage + "microlens_0_4_13_1" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "microlens"; - version = "0.4.13.0"; - sha256 = "18qhnan4l8wd5g7ks93m627ymsyvjd82yahwd0ycg8rhxbqd08gw"; + version = "0.4.13.1"; + sha256 = "1z6ph89sgdhgdf8sqaw9g978mlnvlc4k8y50pssaxxplizpanm0a"; libraryHaskellDepends = [ base ]; description = "A tiny lens library with no dependencies"; license = lib.licenses.bsd3; @@ -190008,27 +189087,6 @@ self: { }) {}; "microlens-aeson" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, deepseq - , hashable, microlens, scientific, tasty, tasty-hunit, text - , unordered-containers, vector - }: - mkDerivation { - pname = "microlens-aeson"; - version = "2.4.1"; - sha256 = "0h11h1vg467aq1w6gfb0jvzvhk6xsl1i1bl7qfw5kdsnvrd3nbg9"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring deepseq hashable microlens - scientific text unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring deepseq hashable microlens tasty tasty-hunit - text unordered-containers vector - ]; - description = "Law-abiding lenses for Aeson, using microlens"; - license = lib.licenses.mit; - }) {}; - - "microlens-aeson_2_5_0" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, hashable , microlens, scientific, tasty, tasty-hunit, text, vector }: @@ -190046,7 +189104,6 @@ self: { ]; description = "Law-abiding lenses for Aeson, using microlens"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "microlens-contra" = callPackage @@ -190060,6 +189117,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "microlens-contra_0_1_0_3" = callPackage + ({ mkDerivation, base, microlens }: + mkDerivation { + pname = "microlens-contra"; + version = "0.1.0.3"; + sha256 = "1jxm6shmvacbic6i6hask0kv89kramnk77pcxpv4gv4xydjsr88n"; + libraryHaskellDepends = [ base microlens ]; + description = "True folds and getters for microlens"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "microlens-each" = callPackage ({ mkDerivation, base, microlens }: mkDerivation { @@ -190088,14 +189157,14 @@ self: { license = lib.licenses.bsd3; }) {}; - "microlens-ghc_0_4_14_0" = callPackage + "microlens-ghc_0_4_14_1" = callPackage ({ mkDerivation, array, base, bytestring, containers, microlens , transformers }: mkDerivation { pname = "microlens-ghc"; - version = "0.4.14.0"; - sha256 = "1iwj2ngkd69il0rncjl84ackphc6jj48skiqgpi27b18l5nwi3v1"; + version = "0.4.14.1"; + sha256 = "1h6wcgv50mxqz09wkamqjgw90382a4m31mq7q57vmzmkl489nw2n"; libraryHaskellDepends = [ array base bytestring containers microlens transformers ]; @@ -190119,6 +189188,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "microlens-mtl_0_2_0_3" = callPackage + ({ mkDerivation, base, microlens, mtl, transformers + , transformers-compat + }: + mkDerivation { + pname = "microlens-mtl"; + version = "0.2.0.3"; + sha256 = "1ilz0zyyk9f6h97gjsaqq65njfs23fk3wxhigvj4z0brf7rnlssd"; + libraryHaskellDepends = [ + base microlens mtl transformers transformers-compat + ]; + description = "microlens support for Reader/Writer/State from mtl"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "microlens-platform" = callPackage ({ mkDerivation, base, hashable, microlens, microlens-ghc , microlens-mtl, microlens-th, text, unordered-containers, vector @@ -190135,14 +189220,14 @@ self: { license = lib.licenses.bsd3; }) {}; - "microlens-platform_0_4_3_2" = callPackage + "microlens-platform_0_4_3_3" = callPackage ({ mkDerivation, base, hashable, microlens, microlens-ghc , microlens-mtl, microlens-th, text, unordered-containers, vector }: mkDerivation { pname = "microlens-platform"; - version = "0.4.3.2"; - sha256 = "12nkwlpj0lr50lw0gr1mf306a94w0x6zkbl97ss4m2cd28im21sj"; + version = "0.4.3.3"; + sha256 = "13s6m07whp3h05vqm2hz3qv5ai51ll6q4s3kf8nr3pif6wxqbisy"; libraryHaskellDepends = [ base hashable microlens microlens-ghc microlens-mtl microlens-th text unordered-containers vector @@ -190188,6 +189273,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "microlens-th_0_4_3_11" = callPackage + ({ mkDerivation, base, containers, microlens, tagged + , template-haskell, th-abstraction, transformers + }: + mkDerivation { + pname = "microlens-th"; + version = "0.4.3.11"; + sha256 = "1vjjaclfxr0kvlpmj8zh7f6ci4n4b8vynqd67zszx42al7gal6pj"; + libraryHaskellDepends = [ + base containers microlens template-haskell th-abstraction + transformers + ]; + testHaskellDepends = [ base microlens tagged ]; + description = "Automatic generation of record lenses for microlens"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "micrologger" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, hspec, lens , text, text-format, time, transformers @@ -190348,6 +189451,7 @@ self: { description = "Convert between datatypes of the midi and the alsa packages"; license = lib.licenses.bsd3; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; }) {}; "midi-music-box" = callPackage @@ -190465,7 +189569,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "midisurface"; - broken = true; }) {}; "mighttpd" = callPackage @@ -190556,8 +189659,6 @@ self: { ]; description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "migrant-hdbc" = callPackage @@ -190576,7 +189677,6 @@ self: { ]; description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "migrant-postgresql-simple" = callPackage @@ -190598,6 +189698,7 @@ self: { description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "migrant-sqlite-simple" = callPackage @@ -190615,7 +189716,6 @@ self: { ]; description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "mikmod" = callPackage @@ -190795,17 +189895,30 @@ self: { ]; description = "MIME implementation for String's"; license = "unknown"; + hydraPlatforms = lib.platforms.none; }) {}; "mime-types" = callPackage ({ mkDerivation, base, bytestring, containers, text }: mkDerivation { pname = "mime-types"; + version = "0.1.0.9"; + sha256 = "1lkipa4v73z3l5lqs6sdhl898iq41kyxv2jb9agsajzgd58l6cha"; + libraryHaskellDepends = [ base bytestring containers text ]; + description = "Basic mime-type handling types and functions"; + license = lib.licenses.mit; + }) {}; + + "mime-types_0_1_1_0" = callPackage + ({ mkDerivation, base, bytestring, containers, text }: + mkDerivation { + pname = "mime-types"; version = "0.1.1.0"; sha256 = "06z1z5q7c77sdaych0jq1d54vdkrx1gybzyl6crcnhkiwga1xl7b"; libraryHaskellDepends = [ base bytestring containers text ]; description = "Basic mime-type handling types and functions"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "min-max-pqueue" = callPackage @@ -191357,6 +190470,7 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "mirror-tweet"; + broken = true; }) {}; "misfortune" = callPackage @@ -191964,22 +191078,6 @@ self: { ({ mkDerivation, base, mtl, transformers, transformers-compat }: mkDerivation { pname = "mmorph"; - version = "1.1.5"; - sha256 = "0bq9m3hlfax1826gg5yhih79x33rvfx59wdh8yf43azd7l74bys6"; - revision = "1"; - editedCabalFile = "087v8ajcfpx4f0v4jxvv16h6jswgnkfnyfn28k406d5w3ihcx1wl"; - libraryHaskellDepends = [ - base mtl transformers transformers-compat - ]; - description = "Monad morphisms"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "mmorph_1_2_0" = callPackage - ({ mkDerivation, base, mtl, transformers, transformers-compat }: - mkDerivation { - pname = "mmorph"; version = "1.2.0"; sha256 = "1022d8mm523dihkf85mqsqxpm9rnyicmv91c8rm4csv7xdc80cv1"; revision = "3"; @@ -191989,7 +191087,6 @@ self: { ]; description = "Monad morphisms"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -192048,8 +191145,6 @@ self: { libraryHaskellDepends = [ base directory ]; description = "A small library to deal with executable endings"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mmsyn4" = callPackage @@ -192064,7 +191159,6 @@ self: { executableHaskellDepends = [ base directory mmsyn3 process ]; description = "The \"glue\" between electronic tables and GraphViz"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "mmsyn4"; }) {}; @@ -192125,7 +191219,6 @@ self: { ]; description = "A musical instrument synthesizer or a tool for Ukrainian language listening"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "mmsyn6ukra"; }) {}; @@ -192171,7 +191264,6 @@ self: { ]; description = "Modifies the amplitudes of the sounds representations created by mmsyn7ukr-array and mmsyn7ukr packages"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "mmsyn7l"; }) {}; @@ -192228,7 +191320,6 @@ self: { ]; description = "A simple reduced basic interface to some SoX functionality or to produce a voice that can be used by mmsyn7h-array, dobutokO2-array and other similar packages"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "mmsyn7ukr-common" = callPackage @@ -192240,7 +191331,6 @@ self: { libraryHaskellDepends = [ base directory mmsyn3 process ]; description = "Some common for mmsyn7ukr and mmsyn7ukr-array functionality using SoX"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "mmtf" = callPackage @@ -192402,7 +191492,6 @@ self: { description = "Mock records of functions easily"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mockery" = callPackage @@ -192457,6 +191546,8 @@ self: { ]; description = "Communicate with Modbus devices over TCP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "model" = callPackage @@ -192476,6 +191567,8 @@ self: { ]; description = "Derive a model of a data type using Generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "modelicaparser" = callPackage @@ -192581,13 +191674,13 @@ self: { }) {}; "modular-arithmetic" = callPackage - ({ mkDerivation, base, doctest, typelits-witnesses }: + ({ mkDerivation, base, doctest }: mkDerivation { pname = "modular-arithmetic"; version = "2.0.0.2"; sha256 = "1bbn3pwvpl9v7a8gkxx83w2s8mk2q9gin7yvkkr97f64rdf8lnrq"; - libraryHaskellDepends = [ base typelits-witnesses ]; - testHaskellDepends = [ base doctest typelits-witnesses ]; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; description = "A type for integers modulo some constant"; license = lib.licenses.bsd3; }) {}; @@ -192927,9 +192020,8 @@ self: { ]; description = "A library for probabilistic programming"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; + maintainers = [ lib.maintainers.turion ]; }) {}; "monad-bool" = callPackage @@ -193087,6 +192179,8 @@ self: { ]; description = "Just like monad-control, except less efficient, and the monadic state terms are all * -> *"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monad-control-identity" = callPackage @@ -193243,20 +192337,17 @@ self: { description = "A class of monads which can do http requests"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monad-interleave" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "monad-interleave"; - version = "0.1"; - sha256 = "09hpl7ah5ivsrx4xlk96d129n1j4wpx7kj6l95zwadyaz7rj9fp7"; + version = "0.2.0.1"; + sha256 = "0ajn06f3q181nf6xa4kish04bv74crqmsmk7i1ny4kw1m9ag139d"; libraryHaskellDepends = [ base ]; description = "Monads with an unsaveInterleaveIO-like operation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monad-introspect" = callPackage @@ -193497,6 +192588,8 @@ self: { ]; description = "syslog output for monad-logger"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monad-loops" = callPackage @@ -193726,20 +192819,6 @@ self: { }: mkDerivation { pname = "monad-parallel"; - version = "0.7.2.5"; - sha256 = "0yjn8acn8z8b1v5nnmwrmrcim9lqh942kgi2c03cnnklfdc1cqip"; - libraryHaskellDepends = [ - base parallel transformers transformers-compat - ]; - description = "Parallel execution of monadic computations"; - license = lib.licenses.bsd3; - }) {}; - - "monad-parallel_0_8" = callPackage - ({ mkDerivation, base, parallel, transformers, transformers-compat - }: - mkDerivation { - pname = "monad-parallel"; version = "0.8"; sha256 = "1j905cwc440g7rvbhsdkqf50ag7p2bi6cy2rqsk918rn80fqqra4"; libraryHaskellDepends = [ @@ -193747,7 +192826,6 @@ self: { ]; description = "Parallel execution of monadic computations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "monad-parallel-progressbar" = callPackage @@ -193902,6 +192980,7 @@ self: { ]; description = "A new, simple, composable concurrency abstraction"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.turion ]; }) {}; "monad-skeleton" = callPackage @@ -194109,6 +193188,8 @@ self: { libraryHaskellDepends = [ base mtl transformers ]; description = "Tree data structure for nondeterministic computations"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monad-tx" = callPackage @@ -194152,8 +193233,6 @@ self: { ]; description = "Typeclasses for representing monad transformer unlifting"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monad-unlift-ref" = callPackage @@ -194171,7 +193250,6 @@ self: { ]; description = "Typeclasses for representing monad transformer unlifting"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "monad-validate" = callPackage @@ -194292,6 +193370,8 @@ self: { ]; description = "A monad for using CryptoRandomGen"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monadfibre" = callPackage @@ -194334,6 +193414,8 @@ self: { testHaskellDepends = [ base ]; description = "Recursion Schemes for Monadic version"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monadiccp" = callPackage @@ -194475,7 +193557,6 @@ self: { ]; testHaskellDepends = [ base tasty tasty-hunit transformers ]; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "monadplus" = callPackage @@ -194502,8 +193583,6 @@ self: { libraryHaskellDepends = [ base mtl transformers ]; description = "Monad classes, using functional dependencies"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monads-tf" = callPackage @@ -194611,6 +193690,8 @@ self: { pname = "mongoDB"; version = "2.7.1.2"; sha256 = "0csjhvsvy534lq7lvqx96dw6ia3737rg7q96174067k7mhkxwf9m"; + revision = "1"; + editedCabalFile = "06kdgrg2p2c9n6im1fy04y0rvlwc4xssmk9wvw33k9svhzld7afr"; libraryHaskellDepends = [ array base base16-bytestring base64-bytestring binary bson bytestring conduit conduit-extra containers cryptohash @@ -194834,13 +193915,16 @@ self: { }) {}; "monoid-map" = callPackage - ({ mkDerivation, base, monoidal-containers, reflex, witherable }: + ({ mkDerivation, base, commutative-semigroups, monoidal-containers + , patch, reflex, witherable + }: mkDerivation { pname = "monoid-map"; - version = "0.1.1.0"; - sha256 = "0rqmgqvq19yjy3g977zm12ih7a3s3giv2dz32qw1xq8cqjxyc709"; + version = "0.2.0.0"; + sha256 = "0mmz57l0yfkdk3psaxyavs2v5hs860ja5a0wk08n2zar3br4fa2l"; libraryHaskellDepends = [ - base monoidal-containers reflex witherable + base commutative-semigroups monoidal-containers patch reflex + witherable ]; description = "A monoidal map with the right group instance"; license = lib.licenses.bsd3; @@ -194915,15 +193999,15 @@ self: { license = lib.licenses.bsd3; }) {}; - "monoid-subclasses_1_2" = callPackage + "monoid-subclasses_1_2_1" = callPackage ({ mkDerivation, base, bytestring, commutative-semigroups , containers, primes, QuickCheck, quickcheck-instances, tasty , tasty-quickcheck, text, vector }: mkDerivation { pname = "monoid-subclasses"; - version = "1.2"; - sha256 = "10ajd7pm0jgqvsyp61sjyfg4392nmrxir0fry4zc4l2rl8vw1q9s"; + version = "1.2.1"; + sha256 = "10q71zpj2q81q4dpb9mmsds0jwhcvlxqdgxk0kjiqf8i78qy54hn"; libraryHaskellDepends = [ base bytestring commutative-semigroups containers primes text vector @@ -195014,49 +194098,6 @@ self: { "monomer" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , bytestring-to-vector, c2hs, containers, data-default, directory - , exceptions, extra, formatting, glew, hspec, http-client, HUnit - , JuicyPixels, lens, mtl, nanovg, OpenGL, OpenGLRaw, process - , random, safe, scientific, sdl2, silently, stm, text, text-show - , time, transformers, unordered-containers, vector, websockets - , wreq, wuss - }: - mkDerivation { - pname = "monomer"; - version = "1.3.0.0"; - sha256 = "19k31vppid5lyvqg4q4r07yzw9yisydhx012yn1fzlfjwc89g9bp"; - revision = "3"; - editedCabalFile = "1jz12ww843d0qk7gy6f8fw4l2mpynkcs9knxfc865zyhcjvimfw2"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - async attoparsec base bytestring bytestring-to-vector containers - data-default exceptions extra formatting http-client JuicyPixels - lens mtl nanovg OpenGL process safe sdl2 stm text text-show time - transformers unordered-containers vector wreq - ]; - librarySystemDepends = [ glew ]; - libraryToolDepends = [ c2hs ]; - executableHaskellDepends = [ - aeson async attoparsec base bytestring bytestring-to-vector - containers data-default exceptions extra formatting http-client - JuicyPixels lens mtl nanovg OpenGL OpenGLRaw process random safe - scientific sdl2 stm text text-show time transformers - unordered-containers vector websockets wreq wuss - ]; - testHaskellDepends = [ - async attoparsec base bytestring bytestring-to-vector containers - data-default directory exceptions extra formatting hspec - http-client HUnit JuicyPixels lens mtl nanovg OpenGL process safe - sdl2 silently stm text text-show time transformers - unordered-containers vector wreq - ]; - description = "A GUI library for writing native Haskell applications"; - license = lib.licenses.bsd3; - }) {inherit (pkgs) glew;}; - - "monomer_1_5_0_0" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, bytestring , bytestring-to-vector, c2hs, containers, data-default, exceptions , extra, formatting, glew, hspec, http-client, JuicyPixels, lens , mtl, nanovg, OpenGLRaw, process, random, sdl2, stm, text @@ -195092,7 +194133,6 @@ self: { ]; description = "A GUI library for writing native Haskell applications"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) glew;}; "monomer-hagrid" = callPackage @@ -195119,9 +194159,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A datagrid widget for the Monomer library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "examples"; - broken = true; }) {}; "monomorphic" = callPackage @@ -195334,6 +194372,7 @@ self: { description = "Invocation helpers for the ReaderT-record-of-functions style"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "moonshine" = callPackage @@ -195593,7 +194632,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "morloc"; - broken = true; }) {}; "morph" = callPackage @@ -195626,8 +194664,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql"; - version = "0.26.0"; - sha256 = "1x1hg60l7zbdb7kg2gx93zxknd9f7bbdvr6r9hcy8w86h8aplilm"; + version = "0.27.0"; + sha256 = "1d2wk0zw3qb22skv7g4xagl04las5xnh9f4223c4as9cf39pcrp9"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers morpheus-graphql-app @@ -195644,7 +194682,6 @@ self: { ]; description = "Morpheus GraphQL"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-app" = callPackage @@ -195656,8 +194693,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-app"; - version = "0.26.0"; - sha256 = "1dq0hnm1bsy43vbrs2rm5df5j9yy55azj420jf8fs71676xni7hn"; + version = "0.27.0"; + sha256 = "0mg12a8s2zcxcbm1zm5a4gn6vz8d9d1qdhk930zddxqbll5gq7nq"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers hashable megaparsec @@ -195672,7 +194709,6 @@ self: { ]; description = "Morpheus GraphQL App"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-cli" = callPackage @@ -195695,6 +194731,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "morpheus"; + broken = true; }) {}; "morpheus-graphql-client" = callPackage @@ -195707,8 +194744,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-client"; - version = "0.26.0"; - sha256 = "0n8x888qhamlb6pkk4sa864mb3y7h261s1f83waqg0d7qdwcp5nx"; + version = "0.27.0"; + sha256 = "120414v0rcvzgm9dc2fx8598d88dqnpvhkc8zh3y2gl3b1bl31jb"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers file-embed modern-uri @@ -195726,7 +194763,6 @@ self: { ]; description = "Morpheus GraphQL Client"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-code-gen" = callPackage @@ -195738,8 +194774,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-code-gen"; - version = "0.26.0"; - sha256 = "1mdhifqqj44dr9j2z4nh0m8n4836mv8cav9qn155b3nairfh3w3a"; + version = "0.27.0"; + sha256 = "0aw9fl0hzl657w2arybyk0zqxvbdz897kiqwsv52r50dnb5x2izf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -195757,26 +194793,24 @@ self: { ]; description = "Morpheus GraphQL CLI"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "morpheus"; }) {}; "morpheus-graphql-code-gen-utils" = callPackage ({ mkDerivation, base, bytestring, containers - , morpheus-graphql-core, prettyprinter, relude, template-haskell - , text, unordered-containers + , morpheus-graphql-core, mtl, prettyprinter, relude + , template-haskell, text, unordered-containers }: mkDerivation { pname = "morpheus-graphql-code-gen-utils"; - version = "0.26.0"; - sha256 = "0nhv20vn8v73zri9ws3rwyi9xyshp6pm7v610rrwfa43wyxlpq5g"; + version = "0.27.0"; + sha256 = "1d5v3b63v9yf47a5hh2am6v09hwm4sfxls38iwvlxva3km0s1qgn"; libraryHaskellDepends = [ - base bytestring containers morpheus-graphql-core prettyprinter + base bytestring containers morpheus-graphql-core mtl prettyprinter relude template-haskell text unordered-containers ]; description = "Morpheus GraphQL CLI"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-core" = callPackage @@ -195787,8 +194821,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-core"; - version = "0.26.0"; - sha256 = "0cj78h29ryalxnx4hzpl5kywqdcvjxvxqlc6axibb1cmajn4kbqm"; + version = "0.27.0"; + sha256 = "0001pq7zj5rpjcg0jasd3vklisan2i8nxyk8d7xa31d4f1grn5ff"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers hashable megaparsec mtl relude @@ -195803,8 +194837,6 @@ self: { ]; description = "Morpheus GraphQL Core"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "morpheus-graphql-server" = callPackage @@ -195816,8 +194848,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-server"; - version = "0.26.0"; - sha256 = "1aca18d60ja6awgsvwjjbikqhvspn3wans1dvh57g37ma1p1v331"; + version = "0.27.0"; + sha256 = "0cd6qczbb5cm12xv181pzq6d62nv7nf4w1yd3gmhzjfrks62lhwy"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers morpheus-graphql-app @@ -195832,7 +194864,6 @@ self: { ]; description = "Morpheus GraphQL"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-subscriptions" = callPackage @@ -195842,8 +194873,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-subscriptions"; - version = "0.26.0"; - sha256 = "1kmd37w3kp2mdhz64fwlyl9v7p10x3p6fbzw535kipic89y9pcx2"; + version = "0.27.0"; + sha256 = "138fcganlaj4fyq1aygiyy6f4hhw58n26ldrdkxhd66hr1mqv6j9"; libraryHaskellDepends = [ aeson base bytestring morpheus-graphql-app morpheus-graphql-core mtl relude text transformers unliftio-core unordered-containers @@ -195851,7 +194882,6 @@ self: { ]; description = "Morpheus GraphQL Subscriptions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-tests" = callPackage @@ -195860,31 +194890,14 @@ self: { }: mkDerivation { pname = "morpheus-graphql-tests"; - version = "0.18.0"; - sha256 = "0l89mmsl09ph412l8f9xjlyx8yp5g69ffmajynxcqvj501n21s9z"; - libraryHaskellDepends = [ - aeson base bytestring directory relude tasty tasty-hunit text - unordered-containers - ]; - description = "Morpheus GraphQL Test"; - license = lib.licenses.mit; - }) {}; - - "morpheus-graphql-tests_0_26_0" = callPackage - ({ mkDerivation, aeson, base, bytestring, directory, relude, tasty - , tasty-hunit, text, unordered-containers - }: - mkDerivation { - pname = "morpheus-graphql-tests"; - version = "0.26.0"; - sha256 = "0dyza53pp9s16y8mlpm63b9ds396lqf8wsj2qaymyy18iakcfb9m"; + version = "0.27.0"; + sha256 = "1h6nri73s5ibzidhwrkxffldardx6khq9kvhmqklm06cilwr56xi"; libraryHaskellDepends = [ aeson base bytestring directory relude tasty tasty-hunit text unordered-containers ]; description = "Morpheus GraphQL Test"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morphisms" = callPackage @@ -196005,6 +195018,7 @@ self: { license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; mainProgram = "mortred"; + broken = true; }) {}; "mosaico-lib" = callPackage @@ -196024,7 +195038,6 @@ self: { description = "Generación interactiva de mosaicos"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mosquitto-hs" = callPackage @@ -196114,9 +195127,7 @@ self: { testHaskellDepends = [ base indexed indexed-extras row-types ]; description = "Type-safe effectful state machines in Haskell"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "example-door"; - broken = true; }) {}; "motor-diagrams" = callPackage @@ -196155,6 +195166,7 @@ self: { description = "Reflect on Motor FSM typeclasses to obtain runtime representations"; license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mount" = callPackage @@ -196288,8 +195300,6 @@ self: { libraryHaskellDepends = [ base ghc-prim primitive ]; description = "Efficient effect handlers based on evidence-passing semantics"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mpg123-bindings" = callPackage @@ -196404,8 +195414,8 @@ self: { ({ mkDerivation, base, containers, extra, numeric-prelude, text }: mkDerivation { pname = "mpolynomials"; - version = "0.1.0.0"; - sha256 = "0p2x8hr5yydqnm5znh7ghfyis5s4vapk10q8qs76il7vb68np352"; + version = "0.1.1.0"; + sha256 = "05nqmxh1i7q89iswl47c20z0gzqg4kznnmp8h6qyrj316l14xnlc"; libraryHaskellDepends = [ base containers extra numeric-prelude text ]; @@ -196697,8 +195707,6 @@ self: { testHaskellDepends = [ base hspec ]; description = "A simple way to read environment variables in Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mrifk" = callPackage @@ -196834,6 +195842,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "msgpack-binary" = callPackage @@ -196863,7 +195872,6 @@ self: { description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "msgpack-idl" = callPackage @@ -196915,7 +195923,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "msgpack-parser"; - broken = true; }) {}; "msgpack-rpc" = callPackage @@ -196977,6 +195984,7 @@ self: { testHaskellDepends = [ base hspec ]; description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "msgpack-types" = callPackage @@ -197001,6 +196009,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "msh" = callPackage @@ -197034,7 +196044,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "msi-kb-backlit"; - broken = true; }) {}; "mssql-simple" = callPackage @@ -197055,6 +196064,8 @@ self: { ]; description = "SQL Server client library implemented in Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mstate" = callPackage @@ -197691,8 +196702,6 @@ self: { ]; description = "A simple document-oriented database"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mueval" = callPackage @@ -198085,6 +197094,8 @@ self: { pname = "multipart"; version = "0.2.1"; sha256 = "0p6n4knxpjv70nbl6cmd6x7gkdjsjqp4ya7fz00bfrqp7jvhlivn"; + revision = "1"; + editedCabalFile = "03gaapwnvn843hpm5qwdci9df1wf383msd42p8w9ghilpfjj4qy9"; libraryHaskellDepends = [ base bytestring parsec stringsearch ]; description = "Parsers for the HTTP multipart format"; license = lib.licenses.bsd3; @@ -198201,6 +197212,8 @@ self: { ]; description = "Generalized system for reading and writing to distributed systems that have primary/replica topologies"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "multipool-persistent" = callPackage @@ -198221,6 +197234,7 @@ self: { ]; description = "Read and write from appropriate persistent sql instances in replicated environments"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "multipool-persistent-postgresql" = callPackage @@ -198246,7 +197260,6 @@ self: { description = "Read and write appropriately from both master and replicated postgresql instances"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "multipool-postgresql-simple" = callPackage @@ -198267,6 +197280,7 @@ self: { unliftio-core unordered-containers ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "multiprocess" = callPackage @@ -198380,6 +197394,8 @@ self: { testHaskellDepends = [ base hspec transformers ]; description = "like mtl's ReaderT / WriterT / StateT, but more than one contained value/type"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "multivariant" = callPackage @@ -198412,7 +197428,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; }) {}; "multivector" = callPackage @@ -198500,6 +197515,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "mur"; + broken = true; }) {}; "murmur-hash" = callPackage @@ -199013,6 +198029,8 @@ self: { ]; description = "Automatic piecewise-mutable references for your types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mutable-containers" = callPackage @@ -199066,8 +198084,6 @@ self: { benchmarkHaskellDepends = [ base extra primitive ]; description = "Interoperate mutable references with regular lens"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mute-unmute" = callPackage @@ -199467,6 +198483,7 @@ self: { ]; description = "Binding to mybitcoin.com's Shopping Cart Interface."; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "myo" = callPackage @@ -199723,7 +198740,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "mywatch"; - broken = true; }) {}; "mywork" = callPackage @@ -199749,6 +198765,7 @@ self: { license = lib.licenses.isc; hydraPlatforms = lib.platforms.none; mainProgram = "mywork"; + broken = true; }) {}; "myxine-client" = callPackage @@ -200227,6 +199244,8 @@ self: { ]; description = "A threadsafe binding to glibc's crypt_r function"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) libxcrypt;}; "nano-erl" = callPackage @@ -201039,6 +200058,7 @@ self: { license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; mainProgram = "neko-obfs"; + broken = true; }) {}; "nemesis" = callPackage @@ -201549,7 +200569,6 @@ self: { description = "The NetCore compiler and runtime system for OpenFlow networks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "netease-fm" = callPackage @@ -201607,6 +200626,7 @@ self: { ]; description = "Helper modules for comfort-array wrappers to BLAS and LAPACK"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "netlib-ffi" = callPackage @@ -201848,7 +200868,6 @@ self: { description = "OpenFlow protocol messages, binary formats, and servers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "netwire" = callPackage @@ -202313,9 +201332,7 @@ self: { ]; description = "Domain Name System data structures"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hs-network-dns-examples-resolver"; - broken = true; }) {}; "network-enumerator" = callPackage @@ -202436,7 +201453,9 @@ self: { doHaddock = false; description = "network-manager tui"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "nmt"; + broken = true; }) {}; "network-messagepack-rpc" = callPackage @@ -202473,6 +201492,8 @@ self: { ]; description = "WebSocket backend for MessagePack RPC"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "network-metrics" = callPackage @@ -202835,23 +201856,6 @@ self: { }: mkDerivation { pname = "network-transport"; - version = "0.5.4"; - sha256 = "0izcqi3zl7ynav0qqrrfmiax8vziqwrhflprddhjj6x6nkzhp1sv"; - revision = "1"; - editedCabalFile = "03parnmzh2mffs6fadqbf4lw1d5bsmvr347rzamp230s303nr6yc"; - libraryHaskellDepends = [ - base binary bytestring deepseq hashable transformers - ]; - description = "Network abstraction layer"; - license = lib.licenses.bsd3; - }) {}; - - "network-transport_0_5_6" = callPackage - ({ mkDerivation, base, binary, bytestring, deepseq, hashable - , transformers - }: - mkDerivation { - pname = "network-transport"; version = "0.5.6"; sha256 = "10ichr66j06w2sdx5523rjvwf17cxhl5iw6izw7l066lrbzkr270"; libraryHaskellDepends = [ @@ -202859,7 +201863,6 @@ self: { ]; description = "Network abstraction layer"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "network-transport-amqp" = callPackage @@ -203109,22 +202112,6 @@ self: { }: mkDerivation { pname = "network-wait"; - version = "0.1.2.0"; - sha256 = "1fgcp2didz7zp4jpkc9zap94sbd6ny8nyrx6nwnfai2ssw5rxpfq"; - libraryHaskellDepends = [ base exceptions network retry ]; - testHaskellDepends = [ - base exceptions network network-simple retry tasty tasty-hunit - ]; - description = "Lightweight library for waiting on networked services to become available"; - license = lib.licenses.mit; - }) {}; - - "network-wait_0_2_0_0" = callPackage - ({ mkDerivation, base, exceptions, network, network-simple, retry - , tasty, tasty-hunit - }: - mkDerivation { - pname = "network-wait"; version = "0.2.0.0"; sha256 = "1g3fvpf91q31gbmla9r3zwm8n3r3v4n1dmznjhwc7wssfmk2jdh0"; libraryHaskellDepends = [ base exceptions network retry ]; @@ -203133,7 +202120,6 @@ self: { ]; description = "Lightweight library for waiting on networked services to become available"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "network-websocket" = callPackage @@ -203308,8 +202294,8 @@ self: { doHaddock = false; description = "Future-proof system for plain-text notes"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "neuron"; - maintainers = [ lib.maintainers.maralorn ]; }) {}; "newbase60" = callPackage @@ -203650,6 +202636,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "ngrams-loader"; + broken = true; }) {}; "ngx-export" = callPackage @@ -203706,8 +202693,8 @@ self: { }: mkDerivation { pname = "ngx-export-log"; - version = "1.5.1"; - sha256 = "03wr3v7x26c0cm01rclc5fkj2a66pamcjikx8wgariljdzfzr7qs"; + version = "1.5.2"; + sha256 = "0l77znlaps924a7nqzkhc4w971y4q9lm3mr0m6xa3n7bdbmgy99i"; libraryHaskellDepends = [ base bytestring ngx-export ngx-export-tools template-haskell ]; @@ -203957,6 +202944,8 @@ self: { libraryHaskellDepends = [ base bytestring http-conduit xml ]; description = "Haskell interface to the nist random beacon"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "nitro" = callPackage @@ -204085,8 +203074,8 @@ self: { pname = "nix-diff"; version = "1.0.18"; sha256 = "0pqz207zywcs38w8yaq5qgbsps7vx0zf2wykaxq9zs43d74ygh64"; - revision = "1"; - editedCabalFile = "12fb817s9dq2hf8v63c1b92zpxkil633swzf41739q1vlwqg39xh"; + revision = "2"; + editedCabalFile = "06zc80l50zaa7xp7svdfj5xvflim42g4j4jdkcbx1m5irr9384s1"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -204300,26 +203289,25 @@ self: { "nix-tree" = callPackage ({ mkDerivation, aeson, async, base, brick, bytestring, clock - , containers, deepseq, directory, filepath, hashable, hedgehog - , hrfsize, optparse-applicative, relude, terminal-progress-bar - , text, transformers, typed-process, unordered-containers, vty + , containers, directory, filepath, hedgehog, hrfsize, microlens + , optparse-applicative, relude, terminal-progress-bar, text + , typed-process, unordered-containers, vty }: mkDerivation { pname = "nix-tree"; - version = "0.2.1"; - sha256 = "1ca4a6mmbb8kvja3ipiifj7kfxayq9ik3ip10m6nkf99a56060jw"; + version = "0.3.1"; + sha256 = "13prwlkiy6cjp49clx3fw3rbhp7p1p6cx9lya06d58rqys782qkr"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - aeson async base brick bytestring clock containers deepseq - directory filepath hashable hrfsize optparse-applicative relude - terminal-progress-bar text transformers typed-process - unordered-containers vty + aeson async base brick bytestring clock containers directory + filepath hrfsize microlens optparse-applicative relude + terminal-progress-bar text typed-process unordered-containers vty ]; testHaskellDepends = [ - aeson base brick bytestring clock containers deepseq directory - filepath hashable hedgehog hrfsize optparse-applicative relude text - transformers typed-process unordered-containers vty + aeson base brick bytestring clock containers directory filepath + hedgehog hrfsize microlens optparse-applicative relude text + typed-process unordered-containers vty ]; description = "Interactively browse a Nix store paths dependencies"; license = lib.licenses.bsd3; @@ -204345,7 +203333,9 @@ self: { ]; description = "Interactively browse a Nix store paths dependencies"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "nixdu"; + broken = true; }) {}; "nixfmt" = callPackage @@ -204739,6 +203729,8 @@ self: { ]; description = "A static site generator"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "nom" = callPackage @@ -204764,15 +203756,14 @@ self: { description = "Name-binding & alpha-equivalence"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "nominal" = callPackage ({ mkDerivation, base, containers }: mkDerivation { pname = "nominal"; - version = "0.2.0.0"; - sha256 = "1wd2vd0qn8ln3a5r29gikdcr4c2c2rf43p6kq3wmqm8ww30djgca"; + version = "0.3.0.0"; + sha256 = "12kryz3z7kds1cca4s414233pd160gkzidf0d1b89zj926zhd766"; libraryHaskellDepends = [ base containers ]; description = "Binders and alpha-equivalence made easy"; license = lib.licenses.gpl3Only; @@ -205021,25 +204012,12 @@ self: { ({ mkDerivation, base, containers, mtl, tasty, tasty-hunit }: mkDerivation { pname = "nondeterminism"; - version = "1.4"; - sha256 = "1ibxnkbr1lqjpr00cmw1p94cypcplxr0yr6q3aspl0vp08xwjdrh"; - libraryHaskellDepends = [ base containers mtl ]; - testHaskellDepends = [ base tasty tasty-hunit ]; - description = "A monad and monad transformer for nondeterministic computations"; - license = "LGPL"; - }) {}; - - "nondeterminism_1_5" = callPackage - ({ mkDerivation, base, containers, mtl, tasty, tasty-hunit }: - mkDerivation { - pname = "nondeterminism"; version = "1.5"; sha256 = "0avbdmzz2p402hniz2kgnz3gjizwa4b2157v8wcf6vzxkbsrjspr"; libraryHaskellDepends = [ base containers mtl ]; testHaskellDepends = [ base tasty tasty-hunit ]; description = "A monad and monad transformer for nondeterministic computations"; license = "LGPL"; - hydraPlatforms = lib.platforms.none; }) {}; "nonempty-alternative" = callPackage @@ -205359,6 +204337,7 @@ self: { ]; description = "Painless 3D graphics, no affiliation with gloss"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "not-gloss-examples" = callPackage @@ -205377,7 +204356,6 @@ self: { description = "examples for not-gloss"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "not-in-base" = callPackage @@ -205503,6 +204481,7 @@ self: { license = "LGPL"; hydraPlatforms = lib.platforms.none; mainProgram = "notmuch-test"; + broken = true; }) {inherit (pkgs) notmuch;}; "notmuch-web" = callPackage @@ -205701,23 +204680,23 @@ self: { }) {}; "nri-http" = callPackage - ({ mkDerivation, aeson, base, bytestring, conduit, http-client - , http-client-tls, http-types, mime-types, network-uri + ({ mkDerivation, aeson, base, bytestring, case-insensitive, conduit + , http-client, http-client-tls, http-types, mime-types, network-uri , nri-observability, nri-prelude, safe-exceptions, text, wai, warp }: mkDerivation { pname = "nri-http"; - version = "0.1.0.4"; - sha256 = "1zf55k4c4zlx2229xxs2hfl7y5c0fb3ab7vrms08imfp0hblj91x"; + version = "0.3.0.0"; + sha256 = "1b3zaw96np1x87839fi47shzb79v6rs6hvr116fjb7kvayrz7xpn"; libraryHaskellDepends = [ - aeson base bytestring conduit http-client http-client-tls - http-types mime-types network-uri nri-observability nri-prelude - safe-exceptions text + aeson base bytestring case-insensitive conduit http-client + http-client-tls http-types mime-types network-uri nri-observability + nri-prelude safe-exceptions text ]; testHaskellDepends = [ - aeson base bytestring conduit http-client http-client-tls - http-types mime-types network-uri nri-observability nri-prelude - safe-exceptions text wai warp + aeson base bytestring case-insensitive conduit http-client + http-client-tls http-types mime-types network-uri nri-observability + nri-prelude safe-exceptions text wai warp ]; description = "Make Elm style HTTP requests"; license = lib.licenses.bsd3; @@ -206135,8 +205114,6 @@ self: { libraryHaskellDepends = [ base call-stack semigroups ]; description = "A sequence of semigroups, for composing stuff in multiple spatial directions"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "numbering" = callPackage @@ -206207,7 +205184,6 @@ self: { description = "Convert numbers to number words"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "numeric-domains" = callPackage @@ -206303,7 +205279,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "Kepler"; - broken = true; }) {}; "numeric-prelude" = callPackage @@ -206588,6 +205563,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Type-level (low cardinality) integers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "numtype-dk" = callPackage @@ -206610,6 +205587,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Type-level (low cardinality) integers, implemented using type families"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "nurbs" = callPackage @@ -206705,8 +205684,8 @@ self: { }: mkDerivation { pname = "nvim-hs"; - version = "2.2.0.3"; - sha256 = "0sbppnphnbygxjns373hyb3hvbwzlv4sq104682bcajd07x6vhmw"; + version = "2.3.1.0"; + sha256 = "1vgdvcvjyl7dxmvmcljb130gwp806769hks00fj1sqfi953lm9bf"; libraryHaskellDepends = [ base bytestring cereal cereal-conduit conduit containers data-default deepseq foreign-store hslogger megaparsec messagepack @@ -206731,7 +205710,7 @@ self: { license = lib.licenses.asl20; }) {}; - "nvim-hs_2_3_0_0" = callPackage + "nvim-hs_2_3_2_0" = callPackage ({ mkDerivation, base, bytestring, cereal, cereal-conduit, conduit , containers, data-default, deepseq, foreign-store, hslogger, hspec , hspec-discover, HUnit, megaparsec, messagepack, mtl, network @@ -206744,8 +205723,8 @@ self: { }: mkDerivation { pname = "nvim-hs"; - version = "2.3.0.0"; - sha256 = "0jc0wzxfkah115j0y4pa4hvr4wziba4q319x5ddgb9jbc52rqh7r"; + version = "2.3.2.0"; + sha256 = "1szvh65sbxk81321ml0b1iib5ziiks2l8liwkgs4z47pmb14cps9"; libraryHaskellDepends = [ base bytestring cereal cereal-conduit conduit containers data-default deepseq foreign-store hslogger megaparsec messagepack @@ -206803,6 +205782,31 @@ self: { pname = "nvim-hs-ghcid"; version = "2.0.0.0"; sha256 = "0i9wc6mgxxzymw1smjvin70i4ynqsn2k3ig36pxmbb6qd0ci0hwg"; + revision = "1"; + editedCabalFile = "0na6lv57jdrpq1zkp3dhlpzh0wrr9632h7izw7jf8622x51qlh4r"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers directory filepath ghcid nvim-hs + nvim-hs-contrib resourcet transformers unliftio yaml + ]; + executableHaskellDepends = [ base nvim-hs ]; + description = "Neovim plugin that runs ghcid to update the quickfix list"; + license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + mainProgram = "nvim-hs-ghcid"; + broken = true; + }) {}; + + "nvim-hs-ghcid_2_0_1_0" = callPackage + ({ mkDerivation, base, bytestring, containers, directory, filepath + , ghcid, nvim-hs, nvim-hs-contrib, resourcet, transformers + , unliftio, yaml + }: + mkDerivation { + pname = "nvim-hs-ghcid"; + version = "2.0.1.0"; + sha256 = "0vx1hj5x6xzxy305qm7ax74b85440hl7wbr39501xz1yanvz5i1i"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -206986,29 +205990,6 @@ self: { }: mkDerivation { pname = "o-clock"; - version = "1.2.1.1"; - sha256 = "0rq9bn9lxsmgjw6w55r3c15y1pjq36vi246qldr53csr0pa9ggfy"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base doctest Glob hedgehog hspec-expectations markdown-unlit tasty - tasty-hedgehog tasty-hunit-compat type-spec - ]; - testToolDepends = [ doctest markdown-unlit ]; - description = "Type-safe time library"; - license = lib.licenses.mpl20; - mainProgram = "play-o-clock"; - }) {}; - - "o-clock_1_3_0" = callPackage - ({ mkDerivation, base, doctest, Glob, hedgehog, hspec-expectations - , markdown-unlit, tasty, tasty-hedgehog, tasty-hunit-compat - , type-spec - }: - mkDerivation { - pname = "o-clock"; version = "1.3.0"; sha256 = "1swayrdhz10b67m6ipa75qz9ycz6r7xbk9fdq3ajlhp9bry31l7i"; revision = "1"; @@ -207024,7 +206005,6 @@ self: { testToolDepends = [ doctest markdown-unlit ]; description = "Type-safe time library"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "play-o-clock"; }) {}; @@ -207051,6 +206031,7 @@ self: { description = "Client to the OANDA REST API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "oasis-xrd" = callPackage @@ -207138,7 +206119,6 @@ self: { description = "OAuth2 jwt-bearer client flow as per rfc7523"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "oauthenticated" = callPackage @@ -207191,6 +206171,7 @@ self: { description = "Communicate to OBD interfaces over ELM327"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "obdd" = callPackage @@ -207692,6 +206673,180 @@ self: { license = lib.licenses.bsd3; }) {}; + "ogma-cli" = callPackage + ({ mkDerivation, base, HUnit, ogma-core, optparse-applicative + , process, test-framework, test-framework-hunit, unix + }: + mkDerivation { + pname = "ogma-cli"; + version = "1.0.6"; + sha256 = "1ldjswdyxckxrmypmx027aw90b93r41izqw4qj1szp6p1mjbx3pn"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ base ogma-core optparse-applicative ]; + testHaskellDepends = [ + base HUnit process test-framework test-framework-hunit unix + ]; + description = "Ogma: Helper tool to interoperate between Copilot and other languages"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + mainProgram = "ogma"; + }) {}; + + "ogma-core" = callPackage + ({ mkDerivation, aeson, base, filepath, HUnit, IfElse, ogma-extra + , ogma-language-c, ogma-language-cocospec, ogma-language-copilot + , ogma-language-fret-cs, ogma-language-fret-reqs, ogma-language-smv + , QuickCheck, test-framework, test-framework-hunit + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-core"; + version = "1.0.6"; + sha256 = "09svwdsn16hfa7rxf4lbpj4i08ay5rrxk6dlmic0gk7yc24mx47c"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + aeson base filepath IfElse ogma-extra ogma-language-c + ogma-language-cocospec ogma-language-copilot ogma-language-fret-cs + ogma-language-fret-reqs ogma-language-smv + ]; + testHaskellDepends = [ + base HUnit QuickCheck test-framework test-framework-hunit + test-framework-quickcheck2 + ]; + description = "Ogma: Helper tool to interoperate between Copilot and other languages"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + }) {}; + + "ogma-extra" = callPackage + ({ mkDerivation, base, bytestring, Cabal, directory, filepath + , QuickCheck, test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-extra"; + version = "1.0.6"; + sha256 = "1wk4374k09wwxhb9ki5pcl6igw6d83bxffrdv7qf8xgm051vna2y"; + libraryHaskellDepends = [ + base bytestring Cabal directory filepath + ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Helper tool to interoperate between Copilot and other languages"; + license = "unknown"; + }) {}; + + "ogma-language-c" = callPackage + ({ mkDerivation, array, base, BNFC, Cabal, process, QuickCheck + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-c"; + version = "1.0.6"; + sha256 = "1c30gcnrhqd4jg1rsv4s8vi0lvpslc3rn8zwkffrwxhll0qv7dma"; + setupHaskellDepends = [ base BNFC Cabal process ]; + libraryHaskellDepends = [ array base ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: C Language Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "ogma-language-cocospec" = callPackage + ({ mkDerivation, array, base, BNFC, Cabal, process, QuickCheck + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-cocospec"; + version = "1.0.6"; + sha256 = "0lnqg0mls8j7k1w735ygl1gaqzy9hz0q71sabirdgqf4p446rm21"; + setupHaskellDepends = [ base BNFC Cabal process ]; + libraryHaskellDepends = [ array base ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: CoCoSpec Language Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "ogma-language-copilot" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "ogma-language-copilot"; + version = "1.0.6"; + sha256 = "0ffbnxbsxl3mcmnys8zhagqwlsxk7da6w2szf9p0sx7032j8j20d"; + libraryHaskellDepends = [ base ]; + description = "Ogma: Runtime Monitor translator: Copilot Language Endpoints"; + license = "unknown"; + }) {}; + + "ogma-language-fret-cs" = callPackage + ({ mkDerivation, aeson, base, ogma-extra, ogma-language-cocospec + , ogma-language-smv, QuickCheck, test-framework + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-fret-cs"; + version = "1.0.6"; + sha256 = "1jb2xqxnr2wp2fwijlzv3lr8a1vwarbk9sy63881v6ygk7jlyz8f"; + libraryHaskellDepends = [ + aeson base ogma-language-cocospec ogma-language-smv + ]; + testHaskellDepends = [ + aeson base ogma-extra QuickCheck test-framework + test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: FRET Component Specification Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + }) {}; + + "ogma-language-fret-reqs" = callPackage + ({ mkDerivation, aeson, base, ogma-extra, ogma-language-cocospec + , ogma-language-smv, QuickCheck, test-framework + , test-framework-quickcheck2, text + }: + mkDerivation { + pname = "ogma-language-fret-reqs"; + version = "1.0.6"; + sha256 = "0dlscsf9i877qjijb5ygw32igyi42s02wj7ggav4h1dy36dm0bf7"; + libraryHaskellDepends = [ + aeson base ogma-language-cocospec ogma-language-smv text + ]; + testHaskellDepends = [ + aeson base ogma-extra QuickCheck test-framework + test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: FRET Component Requirement DB Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + }) {}; + + "ogma-language-smv" = callPackage + ({ mkDerivation, array, base, BNFC, Cabal, process, QuickCheck + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-smv"; + version = "1.0.6"; + sha256 = "1cyjymfil3zyji8lj607r900icj8789nq1zx0civm29mz6ryrj8a"; + setupHaskellDepends = [ base BNFC Cabal process ]; + libraryHaskellDepends = [ array base ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: SMV Language Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "ogmarkup" = callPackage ({ mkDerivation, base, hspec, hspec-megaparsec, megaparsec, mtl , shakespeare, text @@ -207733,6 +206888,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "cmdoh"; + broken = true; }) {}; "oi" = callPackage @@ -207760,8 +206916,8 @@ self: { }: mkDerivation { pname = "oidc-client"; - version = "0.7.0.0"; - sha256 = "0cc1psif3s6qmina5sx49clvpg54b6sapcvq4ax3r0afsp4hdl3m"; + version = "0.7.0.1"; + sha256 = "161dcwnnis9ddxr76fl107dfif1jw6gpbd1ckhh4rclq63vh9inb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -207813,6 +206969,8 @@ self: { ]; description = "A microframework based on monadic parsing"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "old-locale" = callPackage @@ -207964,7 +207122,6 @@ self: { description = "Concurrency utilities"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "om-http" = callPackage @@ -207985,7 +207142,6 @@ self: { description = "Http utilities"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "om-http-logging" = callPackage @@ -208073,6 +207229,24 @@ self: { ]; description = "Opinionated logging utilities"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "om-plugin-imports" = callPackage + ({ mkDerivation, base, containers, ghc }: + mkDerivation { + pname = "om-plugin-imports"; + version = "0.1.0.2"; + sha256 = "0r2pn8fcqisjzxv415vj8ldvxz17kv7hqz9z6h4rjg21h6ckqkva"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base containers ghc ]; + executableHaskellDepends = [ base containers ghc ]; + description = "Plugin-based import warnings"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "om-import-warnings-test"; + broken = true; }) {}; "om-show" = callPackage @@ -208084,6 +207258,8 @@ self: { libraryHaskellDepends = [ aeson base text ]; description = "Utilities for showing string-like things"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "om-socket" = callPackage @@ -208108,6 +207284,7 @@ self: { ]; description = "Socket utilities"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "om-time" = callPackage @@ -208121,6 +207298,8 @@ self: { ]; description = "Misc. time utilites"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "omaketex" = callPackage @@ -208326,25 +207505,6 @@ self: { }: mkDerivation { pname = "one-liner"; - version = "2.0"; - sha256 = "0al9wavxx23xbalqw0cdlhq01kx8kyhg33fipwmn5617z3ddir6v"; - revision = "1"; - editedCabalFile = "19iwyb3jx7bwybmmmamyzf4lxiwik7wdl8k1crikzmxn016pnybz"; - libraryHaskellDepends = [ - base bifunctors contravariant ghc-prim linear-base profunctors - tagged transformers - ]; - testHaskellDepends = [ base contravariant HUnit ]; - description = "Constraint-based generics"; - license = lib.licenses.bsd3; - }) {}; - - "one-liner_2_1" = callPackage - ({ mkDerivation, base, bifunctors, contravariant, ghc-prim, HUnit - , linear-base, profunctors, tagged, transformers - }: - mkDerivation { - pname = "one-liner"; version = "2.1"; sha256 = "09gdivd38disddxs42179vmgca0yzk5dfm6ygicgl5l25qbizrfh"; libraryHaskellDepends = [ @@ -208354,7 +207514,6 @@ self: { testHaskellDepends = [ base contravariant HUnit ]; description = "Constraint-based generics"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "one-liner-instances" = callPackage @@ -208525,35 +207684,6 @@ self: { }: mkDerivation { pname = "opaleye"; - version = "0.9.3.2"; - sha256 = "0lkdi2svbv64z4rnsfxbr7ijb3a5rmsx4c6igzql7ajrlwha49rx"; - libraryHaskellDepends = [ - aeson base base16-bytestring bytestring case-insensitive - contravariant postgresql-simple pretty product-profunctors - profunctors scientific semigroups text time-compat - time-locale-compat transformers uuid void - ]; - testHaskellDepends = [ - aeson base bytestring containers contravariant dotenv hspec - hspec-discover multiset postgresql-simple product-profunctors - profunctors QuickCheck semigroups text time time-compat - transformers uuid - ]; - testToolDepends = [ hspec-discover ]; - description = "An SQL-generating DSL targeting PostgreSQL"; - license = lib.licenses.bsd3; - }) {}; - - "opaleye_0_9_6_1" = callPackage - ({ mkDerivation, aeson, base, base16-bytestring, bytestring - , case-insensitive, containers, contravariant, dotenv, hspec - , hspec-discover, multiset, postgresql-simple, pretty - , product-profunctors, profunctors, QuickCheck, scientific - , semigroups, text, time, time-compat, time-locale-compat - , transformers, uuid, void - }: - mkDerivation { - pname = "opaleye"; version = "0.9.6.1"; sha256 = "0xk2ibdakzayqc8h72iq3gav9ism5sww4wiz0wxypm6landzikfr"; libraryHaskellDepends = [ @@ -208571,7 +207701,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "An SQL-generating DSL targeting PostgreSQL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "opaleye-classy" = callPackage @@ -208841,7 +207970,6 @@ self: { testHaskellDepends = [ base mtl tasty tasty-hunit witness ]; description = "open witnesses"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "openai-hs" = callPackage @@ -208866,6 +207994,7 @@ self: { description = "Unofficial OpenAI client"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "openai-servant" = callPackage @@ -208882,8 +208011,6 @@ self: { ]; description = "Unofficial OpenAI servant types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "openal-ffi" = callPackage @@ -209026,6 +208153,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "openapi3-code-generator-exe"; + broken = true; }) {}; "opencc" = callPackage @@ -209040,6 +208168,8 @@ self: { testHaskellDepends = [ base bytestring mtl text transformers ]; description = "OpenCC bindings"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) opencc;}; "opench-meteo" = callPackage @@ -209334,7 +208464,6 @@ self: { description = "Implementation of the OpenPGP message format"; license = "unknown"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "openpgp-Crypto" = callPackage @@ -209523,27 +208652,12 @@ self: { }: mkDerivation { pname = "opentelemetry"; - version = "0.7.0"; - sha256 = "10k9if33ydjc099mgjvgglp6fcmrz0zxpv6khwkhra6lcz35mylv"; - libraryHaskellDepends = [ - base bytestring exceptions ghc-trace-events hashable - ]; - license = lib.licenses.asl20; - }) {}; - - "opentelemetry_0_8_0" = callPackage - ({ mkDerivation, base, bytestring, exceptions, ghc-trace-events - , hashable - }: - mkDerivation { - pname = "opentelemetry"; version = "0.8.0"; sha256 = "05g4jc2cpcj1fa50hvzai4wqczjjb2vyxmxi1hpf26yyfqw1rgz9"; libraryHaskellDepends = [ base bytestring exceptions ghc-trace-events hashable ]; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "opentelemetry-extra" = callPackage @@ -209557,42 +208671,6 @@ self: { }: mkDerivation { pname = "opentelemetry-extra"; - version = "0.7.0"; - sha256 = "11lwhm3rpajmch7kjb4qwngram5ka8fbd3c0mxszlf4a9dlqag32"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - async base binary bytestring clock containers directory exceptions - filepath ghc-events hashable http-client http-client-tls http-types - jsonifier opentelemetry random scientific splitmix stm text - text-show unordered-containers - ]; - executableHaskellDepends = [ - async base bytestring clock containers directory exceptions - filepath hashtables http-client http-client-tls hvega opentelemetry - process text typed-process - ]; - testHaskellDepends = [ - base bytestring generic-arbitrary ghc-events hashable opentelemetry - QuickCheck quickcheck-instances splitmix tasty tasty-discover - tasty-hunit tasty-quickcheck text text-show unordered-containers - ]; - testToolDepends = [ tasty-discover ]; - benchmarkHaskellDepends = [ base opentelemetry tasty-bench ]; - license = lib.licenses.asl20; - }) {}; - - "opentelemetry-extra_0_8_0" = callPackage - ({ mkDerivation, async, base, binary, bytestring, clock, containers - , directory, exceptions, filepath, generic-arbitrary, ghc-events - , hashable, hashtables, http-client, http-client-tls, http-types - , hvega, jsonifier, opentelemetry, process, QuickCheck - , quickcheck-instances, random, scientific, splitmix, stm, tasty - , tasty-bench, tasty-discover, tasty-hunit, tasty-quickcheck, text - , text-show, typed-process, unordered-containers - }: - mkDerivation { - pname = "opentelemetry-extra"; version = "0.8.0"; sha256 = "1g13a8lmrx38a48xhn4v1rk144l44vil7p7w5acb66dn6q0cc15d"; isLibrary = true; @@ -209617,6 +208695,7 @@ self: { benchmarkHaskellDepends = [ base opentelemetry tasty-bench ]; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "opentelemetry-http-client" = callPackage @@ -209643,33 +208722,6 @@ self: { }: mkDerivation { pname = "opentelemetry-lightstep"; - version = "0.7.0"; - sha256 = "1yd6gzhwwmjjh41ipz2kifzpn7hha9nli3war2rqdjvhj349lrw8"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - async base bytestring exceptions http-client http-client-tls - http-types network opentelemetry opentelemetry-extra scientific stm - text unordered-containers - ]; - executableHaskellDepends = [ - async base bytestring clock containers exceptions filepath - ghc-events http-client http-types opentelemetry opentelemetry-extra - splitmix text typed-process unordered-containers - ]; - license = lib.licenses.asl20; - mainProgram = "eventlog-to-lightstep"; - }) {}; - - "opentelemetry-lightstep_0_8_0" = callPackage - ({ mkDerivation, async, base, bytestring, clock, containers - , exceptions, filepath, ghc-events, http-client, http-client-tls - , http-types, network, opentelemetry, opentelemetry-extra - , scientific, splitmix, stm, text, typed-process - , unordered-containers - }: - mkDerivation { - pname = "opentelemetry-lightstep"; version = "0.8.0"; sha256 = "0nvfyd2m393szvvsrpfv8f59xx55xk1mr4gv46idwr43mvqxdz84"; isLibrary = true; @@ -209695,27 +208747,12 @@ self: { }: mkDerivation { pname = "opentelemetry-wai"; - version = "0.7.0"; - sha256 = "09mh8kfh49vx2gascwwmzs4s649sm5i90nsifp76kjvg1nvqhd1m"; - libraryHaskellDepends = [ - base bytestring http-types opentelemetry text wai - ]; - license = lib.licenses.asl20; - }) {}; - - "opentelemetry-wai_0_8_0" = callPackage - ({ mkDerivation, base, bytestring, http-types, opentelemetry, text - , wai - }: - mkDerivation { - pname = "opentelemetry-wai"; version = "0.8.0"; sha256 = "1k5wglr61zly4afij087vjsrxzxn6vvsk6rcasw0q1si8n2kl4wb"; libraryHaskellDepends = [ base bytestring http-types opentelemetry text wai ]; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "opentheory" = callPackage @@ -209951,7 +208988,6 @@ self: { description = "An OpenTok SDK for Haskell"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "opentracing" = callPackage @@ -210561,24 +209597,6 @@ self: { }: mkDerivation { pname = "optparse-applicative"; - version = "0.16.1.0"; - sha256 = "16nnrkmgd28h540f17nb017ziq4gbzgkxpdraqicaczkca1jf1b2"; - revision = "2"; - editedCabalFile = "0ccpk2nb9fvj97z00w8cmlpw4fn94ayndg4ngm2ls4hrdbnj5321"; - libraryHaskellDepends = [ - ansi-wl-pprint base process transformers transformers-compat - ]; - testHaskellDepends = [ base QuickCheck ]; - description = "Utilities and combinators for parsing command line options"; - license = lib.licenses.bsd3; - }) {}; - - "optparse-applicative_0_17_0_0" = callPackage - ({ mkDerivation, ansi-wl-pprint, base, process, QuickCheck - , transformers, transformers-compat - }: - mkDerivation { - pname = "optparse-applicative"; version = "0.17.0.0"; sha256 = "097p1bkvw9r3rvcr65w53yw14drb0s46ldkkl1jbmq5g7m6jwnw2"; libraryHaskellDepends = [ @@ -210587,7 +209605,6 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Utilities and combinators for parsing command line options"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "optparse-applicative-cmdline-util" = callPackage @@ -210596,6 +209613,8 @@ self: { pname = "optparse-applicative-cmdline-util"; version = "0.2.0"; sha256 = "13nr0biqhc2sd30xxn7sms4f0wl629bcahp3hmmcgf45nl38vpbh"; + revision = "1"; + editedCabalFile = "0cgqffzjzww6b6w8mqrs3nm46jbhaqhmflwyd9cis1k35yrw6npg"; libraryHaskellDepends = [ attoparsec base optparse-applicative text ]; @@ -210737,6 +209756,8 @@ self: { ]; description = "Command line option parsing library with a twice applicative interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "opusfile" = callPackage @@ -210774,7 +209795,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.expipiplus1 ]; - broken = true; }) {}; "orc" = callPackage @@ -211004,8 +210024,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Convert numbers to words in different languages"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ordrea" = callPackage @@ -211145,6 +210163,7 @@ self: { description = "A collection of Attoparsec combinators for parsing org-mode flavored documents"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "orgstat" = callPackage @@ -211309,29 +210328,31 @@ self: { }) {}; "ormolu" = callPackage - ({ mkDerivation, ansi-terminal, base, bytestring, Cabal, containers - , Diff, directory, dlist, exceptions, filepath, ghc-lib-parser - , gitrev, hspec, hspec-discover, mtl, optparse-applicative, path - , path-io, syb, temporary, text + ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring + , Cabal, containers, Diff, directory, dlist, exceptions, filepath + , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec + , megaparsec, MemoTrie, mtl, optparse-applicative, path, path-io + , QuickCheck, syb, template-haskell, temporary, text + , th-lift-instances }: mkDerivation { pname = "ormolu"; - version = "0.3.1.0"; - sha256 = "1517z6bi8ifzdmfclmqdiipi6zcnxagymf1sxr43sj2ipkglg2rs"; - revision = "1"; - editedCabalFile = "1ns76yw44hp84lrxdhl23aa2d14jjf4m6fd906672a4b4x3cr64l"; + version = "0.5.0.1"; + sha256 = "1rnf4x352k856avfllk4rc9v0wwkydr030cmp7j29p0y9cwf5pkg"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-terminal base bytestring Cabal containers Diff directory dlist - exceptions filepath ghc-lib-parser mtl syb text + aeson ansi-terminal array base bytestring Cabal containers Diff + directory dlist exceptions filepath ghc-lib-parser megaparsec + MemoTrie mtl syb template-haskell text th-lift-instances ]; executableHaskellDepends = [ - base filepath ghc-lib-parser gitrev optparse-applicative text + base containers filepath ghc-lib-parser gitrev optparse-applicative + text ]; testHaskellDepends = [ - base containers directory filepath hspec path path-io temporary - text + base containers directory filepath ghc-lib-parser hspec + hspec-megaparsec megaparsec path path-io QuickCheck temporary text ]; testToolDepends = [ hspec-discover ]; description = "A formatter for Haskell source code"; @@ -211339,23 +210360,23 @@ self: { mainProgram = "ormolu"; }) {}; - "ormolu_0_5_0_1" = callPackage + "ormolu_0_5_1_0" = callPackage ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring - , Cabal, containers, Diff, directory, dlist, exceptions, filepath - , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec - , megaparsec, MemoTrie, mtl, optparse-applicative, path, path-io - , QuickCheck, syb, template-haskell, temporary, text + , Cabal-syntax, containers, Diff, directory, dlist, exceptions + , filepath, ghc-lib-parser, gitrev, hspec, hspec-discover + , hspec-megaparsec, megaparsec, MemoTrie, mtl, optparse-applicative + , path, path-io, QuickCheck, syb, template-haskell, temporary, text , th-lift-instances }: mkDerivation { pname = "ormolu"; - version = "0.5.0.1"; - sha256 = "1rnf4x352k856avfllk4rc9v0wwkydr030cmp7j29p0y9cwf5pkg"; + version = "0.5.1.0"; + sha256 = "186pa7wpsqipy1vwk1h5w3a5akjknsmmkc18x4i1fvrpigbrcbw9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal array base bytestring Cabal containers Diff - directory dlist exceptions filepath ghc-lib-parser megaparsec + aeson ansi-terminal array base bytestring Cabal-syntax containers + Diff directory dlist exceptions filepath ghc-lib-parser megaparsec MemoTrie mtl syb template-haskell text th-lift-instances ]; executableHaskellDepends = [ @@ -211708,6 +210729,7 @@ self: { ]; description = "External sorting package based on Conduit"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "SortLines"; }) {}; @@ -211732,6 +210754,8 @@ self: { ]; description = "A purely functional E-Graph library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "overhang" = callPackage @@ -211759,6 +210783,7 @@ self: { description = "Finite overloading"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "overloaded" = callPackage @@ -212135,6 +211160,8 @@ self: { ]; description = "PackStream converter for Neo4j BOLT protocol"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "packunused" = callPackage @@ -212555,66 +211582,6 @@ self: { "pandoc" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, attoparsec, base - , base64-bytestring, binary, blaze-html, blaze-markup, bytestring - , case-insensitive, citeproc, commonmark, commonmark-extensions - , commonmark-pandoc, connection, containers, data-default, deepseq - , Diff, directory, doclayout, doctemplates, emojis, exceptions - , file-embed, filepath, Glob, haddock-library, hslua, hslua-aeson - , hslua-marshalling, hslua-module-path, hslua-module-system - , hslua-module-text, hslua-module-version, http-client - , http-client-tls, http-types, ipynb, jira-wiki-markup, JuicyPixels - , lpeg, mtl, network, network-uri, pandoc-lua-marshal, pandoc-types - , parsec, pretty, pretty-show, process, random, safe, scientific - , SHA, skylighting, skylighting-core, split, syb, tagsoup, tasty - , tasty-bench, tasty-golden, tasty-hunit, tasty-lua - , tasty-quickcheck, temporary, texmath, text, text-conversions - , time, unicode-collation, unicode-transforms, unix, xml - , xml-conduit, yaml, zip-archive, zlib - }: - mkDerivation { - pname = "pandoc"; - version = "2.17.1.1"; - sha256 = "1l8spmsyg2c5j16q7a7fd5i6kcvkyipq4jrhrv2k0ca1s4lcb7k4"; - configureFlags = [ "-f-trypandoc" ]; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson aeson-pretty array attoparsec base base64-bytestring binary - blaze-html blaze-markup bytestring case-insensitive citeproc - commonmark commonmark-extensions commonmark-pandoc connection - containers data-default deepseq directory doclayout doctemplates - emojis exceptions file-embed filepath Glob haddock-library hslua - hslua-aeson hslua-marshalling hslua-module-path hslua-module-system - hslua-module-text hslua-module-version http-client http-client-tls - http-types ipynb jira-wiki-markup JuicyPixels lpeg mtl network - network-uri pandoc-lua-marshal pandoc-types parsec pretty - pretty-show process random safe scientific SHA skylighting - skylighting-core split syb tagsoup temporary texmath text - text-conversions time unicode-collation unicode-transforms unix xml - xml-conduit yaml zip-archive zlib - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring containers Diff directory doctemplates exceptions - filepath Glob hslua mtl pandoc-types process tasty tasty-golden - tasty-hunit tasty-lua tasty-quickcheck text time xml zip-archive - ]; - benchmarkHaskellDepends = [ - base bytestring deepseq mtl tasty-bench text - ]; - postInstall = '' - mkdir -p $out/share/man/man1 - mv "man/"*.1 $out/share/man/man1/ - ''; - description = "Conversion between markup formats"; - license = lib.licenses.gpl2Plus; - mainProgram = "pandoc"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "pandoc_2_19_2" = callPackage - ({ mkDerivation, aeson, aeson-pretty, array, attoparsec, base , base64, binary, blaze-html, blaze-markup, bytestring , case-insensitive, citeproc, commonmark, commonmark-extensions , commonmark-pandoc, connection, containers, data-default, deepseq @@ -212671,9 +211638,10 @@ self: { ''; description = "Conversion between markup formats"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "pandoc"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.maralorn lib.maintainers.sternenseemann + ]; }) {}; "pandoc-citeproc" = callPackage @@ -212740,10 +211708,8 @@ self: { }: mkDerivation { pname = "pandoc-crossref"; - version = "0.3.13.0"; - sha256 = "0fn5xrsh1x1rk74vd30yvg4ha9aicqbm7r1w0nrq9fkgcmz1q01x"; - revision = "1"; - editedCabalFile = "09sjf2fm09jcz1mnqlbmbfwb1237j26xcfgfq6b2fpl00gjg83di"; + version = "0.3.14.0"; + sha256 = "1f55xz5r7h6vjjj0dsq5glavn0zjh02imi4mja8qbwn3rvi67l86"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -213092,41 +212058,6 @@ self: { "pandoc-plot" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion - , data-default, directory, filepath, gitrev, hashable, hspec - , hspec-expectations, lifted-async, lifted-base, mtl - , optparse-applicative, pandoc, pandoc-types, shakespeare, tagsoup - , tasty, tasty-hspec, tasty-hunit, template-haskell, text - , typed-process, unix, yaml - }: - mkDerivation { - pname = "pandoc-plot"; - version = "1.4.1"; - sha256 = "1g9757kj50s0fjn7l29ncbp5fb8yhnp5z0sd46gaaprbgqrqfsgh"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring containers data-default directory filepath - hashable lifted-async lifted-base mtl pandoc pandoc-types - shakespeare tagsoup template-haskell text typed-process unix yaml - ]; - executableHaskellDepends = [ - base containers directory filepath gitrev optparse-applicative - pandoc pandoc-types template-haskell text typed-process - ]; - testHaskellDepends = [ - base containers directory filepath hspec hspec-expectations - pandoc-types tasty tasty-hspec tasty-hunit text - ]; - benchmarkHaskellDepends = [ - base criterion pandoc-types template-haskell text - ]; - description = "A Pandoc filter to include figures generated from code blocks using your plotting toolkit of choice"; - license = lib.licenses.gpl2Plus; - mainProgram = "pandoc-plot"; - }) {}; - - "pandoc-plot_1_5_5" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, criterion , data-default, directory, filepath, gitrev, hashable , hspec-expectations, lifted-async, lifted-base, mtl , optparse-applicative, pandoc, pandoc-types, shakespeare, tagsoup @@ -213157,7 +212088,6 @@ self: { ]; description = "A Pandoc filter to include figures generated from code blocks using your plotting toolkit of choice"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "pandoc-plot"; }) {}; @@ -213593,7 +212523,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "pantry_0_7_0" = callPackage + "pantry_0_8_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring, Cabal , casa-client, casa-types, conduit, conduit-extra, containers , cryptonite, cryptonite-conduit, digest, exceptions, filelock @@ -213607,8 +212537,8 @@ self: { }: mkDerivation { pname = "pantry"; - version = "0.7.0"; - sha256 = "19jb1gmpypdv4mdn3gp6fwgwhrynx5w7dy666yr4k23zdbkcrz1v"; + version = "0.8.1"; + sha256 = "01vd0k21mjaj59sjj4jpada3gd112vsjaba962xrp9v9zw2wmzh8"; libraryHaskellDepends = [ aeson ansi-terminal base bytestring Cabal casa-client casa-types conduit conduit-extra containers cryptonite cryptonite-conduit @@ -214261,6 +213191,7 @@ self: { libraryHaskellDepends = [ base parallel tree-monad ]; description = "Parallel Tree Search"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "parameterized" = callPackage @@ -214312,6 +213243,8 @@ self: { ]; description = "Classes and data structures for working with data-kind indexed types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "paramtree" = callPackage @@ -214613,6 +213546,8 @@ self: { ]; description = "Parse machine-readable GHC GC stats"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "parse-help" = callPackage @@ -214646,9 +213581,7 @@ self: { testHaskellDepends = [ base process ]; description = "Parse command-line arguments"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "parseargs-example"; - broken = true; }) {}; "parsec_3_1_15_1" = callPackage @@ -215162,7 +214095,6 @@ self: { description = "A fast parser combinator library backed by Typed Template Haskell"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "parsley-garnish" = callPackage @@ -215197,6 +214129,8 @@ self: { ]; description = "A fast, minimal parser"; license = "(BSD-2-Clause OR Apache-2.0)"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "partage" = callPackage @@ -215247,6 +214181,8 @@ self: { pname = "partial-isomorphisms"; version = "0.2.3.0"; sha256 = "08390b7vj02kbx0s5q3irxljr1p8w4rvm6kf33ivv04cal3r2q39"; + revision = "1"; + editedCabalFile = "1dgig6n1wpdzk5269k98h7pd295k2y21yfr2gaz5fcfliwckfql5"; libraryHaskellDepends = [ base template-haskell ]; description = "Partial isomorphisms"; license = lib.licenses.bsd3; @@ -215266,6 +214202,7 @@ self: { description = "Haskell 98 Partial Lenses"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "partial-order" = callPackage @@ -215299,18 +214236,6 @@ self: { }) {}; "partial-semigroup" = callPackage - ({ mkDerivation, base, doctest, hedgehog }: - mkDerivation { - pname = "partial-semigroup"; - version = "0.5.1.14"; - sha256 = "11xbdv24jy54wniappiqp6j27nm3wjgrbc8zmjkbfwdgb7fzlrws"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest hedgehog ]; - description = "A partial binary associative operator"; - license = lib.licenses.asl20; - }) {}; - - "partial-semigroup_0_6_0_0" = callPackage ({ mkDerivation, base, hedgehog }: mkDerivation { pname = "partial-semigroup"; @@ -215322,7 +214247,6 @@ self: { testHaskellDepends = [ base hedgehog ]; description = "A partial binary associative operator"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "partial-semigroup-hedgehog" = callPackage @@ -215336,8 +214260,6 @@ self: { libraryHaskellDepends = [ base hedgehog partial-semigroup ]; description = "Property testing for partial semigroups using Hedgehog"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "partial-semigroup-test" = callPackage @@ -215350,7 +214272,6 @@ self: { doHaddock = false; description = "Testing utilities for the partial-semigroup package"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "partial-uri" = callPackage @@ -215675,33 +214596,12 @@ self: { ]; description = "Terminal-based presentations using Pandoc"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; mainProgram = "patat"; + broken = true; }) {}; "patch" = callPackage - ({ mkDerivation, base, constraints-extras, containers - , dependent-map, dependent-sum, directory, filemanip, filepath - , hedgehog, hlint, HUnit, indexed-traversable, lens - , monoidal-containers, semialign, semigroupoids, these - , transformers, witherable - }: - mkDerivation { - pname = "patch"; - version = "0.0.6.0"; - sha256 = "0wgxmk9vfrgnq5vg93jwzkszxmyrk91b36fnnlm8qr6mlg7j8m0z"; - libraryHaskellDepends = [ - base constraints-extras containers dependent-map dependent-sum - indexed-traversable lens monoidal-containers semialign - semigroupoids these transformers witherable - ]; - testHaskellDepends = [ - base containers directory filemanip filepath hedgehog hlint HUnit - ]; - description = "Data structures for describing changes to other data structures"; - license = lib.licenses.bsd3; - }) {}; - - "patch_0_0_7_0" = callPackage ({ mkDerivation, base, commutative-semigroups, constraints-extras , containers, dependent-map, dependent-sum, directory, filemanip , filepath, hedgehog, hlint, HUnit, indexed-traversable, lens @@ -215710,8 +214610,8 @@ self: { }: mkDerivation { pname = "patch"; - version = "0.0.7.0"; - sha256 = "0hpx1sh90rhvvd9j8nmpibdhj9jd4mmwbsr1c220ywaz7g6f3bxv"; + version = "0.0.8.0"; + sha256 = "1yxw960j78lx35i2ncipg33n6xdc1jmcmc64kyppygpzn20k3j68"; libraryHaskellDepends = [ base commutative-semigroups constraints-extras containers dependent-map dependent-sum indexed-traversable lens @@ -215723,7 +214623,6 @@ self: { ]; description = "Data structures for describing changes to other data structures"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "patch-combinators" = callPackage @@ -216165,6 +215064,8 @@ self: { ]; description = "Pattern tries"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "patterns" = callPackage @@ -216862,6 +215763,8 @@ self: { ]; description = "Wrapper around the pdfinfo command"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pdfname" = callPackage @@ -216881,7 +215784,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "pdfname"; - broken = true; }) {}; "pdfsplit" = callPackage @@ -216899,7 +215801,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "pdfsplit"; - broken = true; }) {}; "pdftotext" = callPackage @@ -217297,7 +216198,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "penrose"; - broken = true; }) {}; "peparser" = callPackage @@ -217438,21 +216338,6 @@ self: { }) {}; "perf" = callPackage - ({ mkDerivation, base, containers, foldl, mtl, rdtsc, text, time - , transformers - }: - mkDerivation { - pname = "perf"; - version = "0.9.0"; - sha256 = "116j1dygya9226q52vw6l6w64raldjpz7z22kmcm38v36i696lik"; - libraryHaskellDepends = [ - base containers foldl mtl rdtsc text time transformers - ]; - description = "Low-level run time measurement"; - license = lib.licenses.bsd3; - }) {}; - - "perf_0_10_1" = callPackage ({ mkDerivation, base, containers, deepseq, formatn, gauge, mtl , numhask-space, optparse-applicative, rdtsc, recursion-schemes , text, time, vector @@ -217474,6 +216359,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "perf-explore"; + broken = true; }) {}; "perf-analysis" = callPackage @@ -217501,35 +216387,6 @@ self: { }) {}; "perfect-hash-generator" = callPackage - ({ mkDerivation, base, binary, bytestring, containers, data-ordlist - , directory, filepath, hashable, HUnit, optparse-applicative - , random, test-framework, test-framework-hunit, text - , unordered-containers, vector - }: - mkDerivation { - pname = "perfect-hash-generator"; - version = "0.2.0.6"; - sha256 = "045iyxjnx1yzl9xqk5fv8qxjz29sg2pfndry1v24z6a5r88pcwnz"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base binary bytestring containers data-ordlist directory filepath - hashable text unordered-containers vector - ]; - executableHaskellDepends = [ - base binary bytestring containers hashable optparse-applicative - random text unordered-containers vector - ]; - testHaskellDepends = [ - base binary bytestring hashable HUnit optparse-applicative - test-framework test-framework-hunit text unordered-containers - vector - ]; - description = "Perfect minimal hashing implementation in native Haskell"; - license = lib.licenses.asl20; - }) {}; - - "perfect-hash-generator_1_0_0" = callPackage ({ mkDerivation, base, binary, bytestring, containers, data-default , data-ordlist, directory, filepath, hashable, HUnit , optparse-applicative, random, sorted-list, test-framework @@ -217557,7 +216414,6 @@ self: { ]; description = "Perfect minimal hashing implementation in native Haskell"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "perfect-vector-shuffle" = callPackage @@ -217882,6 +216738,8 @@ self: { description = "Serialization library with state and leb128 encoding"; license = lib.licenses.bsd3; badPlatforms = [ "aarch64-linux" "armv7l-linux" ]; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "persist2er" = callPackage @@ -217957,8 +216815,8 @@ self: { pname = "persistent"; version = "2.13.3.5"; sha256 = "0z69yvk0rd29dp5qdhi4p587b891y90azrzzpa3g10cxp3gyywvm"; - revision = "2"; - editedCabalFile = "1x802a6ldvgjjn7mdh8d2c0h5cl0jajvf3g75rza7c8cxrn8f2vw"; + revision = "3"; + editedCabalFile = "0kyipwaspzah6f88s51d61kr8i9g05grm2g0lnnw28jp06nggg5d"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring blaze-html bytestring conduit containers fast-logger http-api-data lift-type monad-logger @@ -217982,7 +216840,7 @@ self: { maintainers = [ lib.maintainers.psibi ]; }) {}; - "persistent_2_14_3_0" = callPackage + "persistent_2_14_4_3" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring , blaze-html, bytestring, conduit, containers, criterion, deepseq , fast-logger, file-embed, hspec, http-api-data, lift-type @@ -217993,24 +216851,22 @@ self: { }: mkDerivation { pname = "persistent"; - version = "2.14.3.0"; - sha256 = "06cs30886s0y50kw4p2x8jw1k173il4mfqdfbkkdnd6kc97j920j"; - revision = "1"; - editedCabalFile = "1qbi74kmjk07wgib2y6pscjbr8mazlj490928h5bvahw10jx3611"; + version = "2.14.4.3"; + sha256 = "057jsf32csrnvfavlz3zgk70ql6y5b8xx4zkmwfg4g6ghsh8gkcv"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring blaze-html bytestring - conduit containers fast-logger http-api-data lift-type monad-logger - mtl path-pieces resource-pool resourcet scientific silently - template-haskell text th-lift-instances time transformers unliftio - unliftio-core unordered-containers vault vector + conduit containers deepseq fast-logger http-api-data lift-type + monad-logger mtl path-pieces resource-pool resourcet scientific + silently template-haskell text th-lift-instances time transformers + unliftio unliftio-core unordered-containers vault vector ]; testHaskellDepends = [ aeson attoparsec base base64-bytestring blaze-html bytestring - conduit containers fast-logger hspec http-api-data monad-logger mtl - path-pieces QuickCheck quickcheck-instances resource-pool resourcet - scientific shakespeare silently template-haskell text - th-lift-instances time transformers unliftio unliftio-core - unordered-containers vector + conduit containers deepseq fast-logger hspec http-api-data + monad-logger mtl path-pieces QuickCheck quickcheck-instances + resource-pool resourcet scientific shakespeare silently + template-haskell text th-lift-instances time transformers unliftio + unliftio-core unordered-containers vector ]; benchmarkHaskellDepends = [ base criterion deepseq file-embed template-haskell text @@ -218288,47 +217144,15 @@ self: { "persistent-mtl" = callPackage ({ mkDerivation, base, bytestring, conduit, containers, esqueleto - , exceptions, explainable-predicates, monad-logger, mtl, persistent - , persistent-postgresql, persistent-sqlite, persistent-template - , resource-pool, resourcet, tasty, tasty-golden, tasty-hunit, text - , transformers, unliftio, unliftio-core, unliftio-pool - }: - mkDerivation { - pname = "persistent-mtl"; - version = "0.4.0.0"; - sha256 = "1i8azgcgj245dw59wnsh1cpn8n3l6b8s8gh5rim8jl315rxbsn5w"; - libraryHaskellDepends = [ - base conduit containers exceptions monad-logger mtl persistent - resource-pool resourcet text transformers unliftio unliftio-core - unliftio-pool - ]; - testHaskellDepends = [ - base bytestring conduit containers esqueleto explainable-predicates - monad-logger persistent persistent-postgresql persistent-sqlite - persistent-template resource-pool resourcet tasty tasty-golden - tasty-hunit text unliftio - ]; - description = "Monad transformer for the persistent API"; - license = lib.licenses.bsd3; - }) {}; - - "persistent-mtl_0_5_0_0" = callPackage - ({ mkDerivation, base, bytestring, conduit, containers, esqueleto - , exceptions, explainable-predicates, monad-logger, mtl, persistent + , explainable-predicates, monad-logger, persistent , persistent-postgresql, persistent-sqlite, persistent-template , resource-pool, resourcet, tasty, tasty-autocollect, tasty-golden - , tasty-hunit, text, transformers, unliftio, unliftio-core - , unliftio-pool + , tasty-hunit, text, unliftio }: mkDerivation { pname = "persistent-mtl"; - version = "0.5.0.0"; - sha256 = "1xmn2zch7zxmjixlyjavl6wwdf0cjqzp01fp7xiy339wfd5higp2"; - libraryHaskellDepends = [ - base conduit containers exceptions monad-logger mtl persistent - resource-pool resourcet text transformers unliftio unliftio-core - unliftio-pool - ]; + version = "0.5.0.1"; + sha256 = "17sxwa8p95nrkacjr1wnpihwfq121z1pkyh1nvlfjy76b4aalqhi"; testHaskellDepends = [ base bytestring conduit containers esqueleto explainable-predicates monad-logger persistent persistent-postgresql persistent-sqlite @@ -218521,7 +217345,6 @@ self: { description = "Template-Haskell helpers for integrating protobufs with persistent"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "persistent-qq" = callPackage @@ -218589,6 +217412,8 @@ self: { pname = "persistent-redis"; version = "2.13.0.1"; sha256 = "1p03bwsldi3w4vsig1krnilhpbkkhzrm240jbx22q514922kgjr9"; + revision = "1"; + editedCabalFile = "0k383hvfpd0s38a8fmr2zad3f10lvz7sj969ainx9fd7hf550br2"; libraryHaskellDepends = [ aeson base binary bytestring hedis http-api-data mtl path-pieces persistent scientific text time transformers utf8-string @@ -219255,6 +218080,7 @@ self: { description = "A mid-level PostgreSQL client library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pgstream" = callPackage @@ -219660,7 +218486,6 @@ self: { ]; description = "A library for working with generalized phonetic languages usage"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "pldPL"; }) {}; @@ -219845,7 +218670,6 @@ self: { ]; description = "Helps to create texts with the given phonetic properties (e. g. poetic)."; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "phonetic-languages-simplified-generalized-examples-common" = callPackage @@ -219862,7 +218686,6 @@ self: { ]; description = "Some common code for phonetic languages generalized functionality"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "phonetic-languages-simplified-generalized-properties-array" = callPackage @@ -219880,7 +218703,6 @@ self: { ]; description = "Some 'properties' of the phonetic languages approach text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "phonetic-languages-simplified-lists-examples" = callPackage @@ -220097,6 +218919,7 @@ self: { ]; description = "Rename photo image files based on EXIF shoot date"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; mainProgram = "photoname"; }) {}; @@ -220257,6 +219080,8 @@ self: { executableHaskellDepends = [ base text ]; description = "Control an Adafruit character LCD and keypad kit on a Raspberry Pi"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pia-forward" = callPackage @@ -220439,8 +219264,8 @@ self: { ({ mkDerivation, base, directory, process, unix }: mkDerivation { pname = "pid1"; - version = "0.1.3.0"; - sha256 = "1m2i03ncgn1y6h2352pnvhcqzif45505vlnxh11xngvjx47f85a1"; + version = "0.1.3.1"; + sha256 = "1xyn50zg4phdv1d7bxqq2ljnil4vlw7qqc7cdlzlc8imxfhr30nl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory process unix ]; @@ -220576,6 +219401,8 @@ self: { ]; description = "Access to the Pinboard API"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pinboard-notes-backup" = callPackage @@ -220585,8 +219412,8 @@ self: { }: mkDerivation { pname = "pinboard-notes-backup"; - version = "1.0.5.4"; - sha256 = "1p6if0hzgab49l39czj18b18z5lqm6akajfp68x8mrbydv55ij54"; + version = "1.0.5.6"; + sha256 = "1vghgv9kmlch9g14imp5skb1ia6nndn1bwhpx7r262fn4dv88372"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -221024,8 +219851,6 @@ self: { testHaskellDepends = [ base bytestring mtl pipes QuickCheck ]; description = "Pipes to group by any delimiter (such as lines with carriage returns)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pipes-brotli" = callPackage @@ -221087,7 +219912,6 @@ self: { description = "Streaming compression/decompression via pipes"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) bzip2;}; "pipes-cacophony" = callPackage @@ -221142,8 +219966,6 @@ self: { ]; description = "Encode and decode cborg streams using the pipes and cborg libraries"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pipes-cellular" = callPackage @@ -221454,8 +220276,8 @@ self: { pname = "pipes-http"; version = "1.0.6"; sha256 = "00579dpb7mh8nli5gfr100w0mrn6nvqhbj50qzxc2m5cvw4gncd2"; - revision = "2"; - editedCabalFile = "1pyxrq9m8c1v747c9bk75z418cyivhf8mbgdgfj9g2dvcf6zaq5w"; + revision = "3"; + editedCabalFile = "0m38lrmr356gfrv6gnrncwiy1hnh882084yn7vgmjsqssgvhbz8a"; libraryHaskellDepends = [ base bytestring http-client http-client-tls pipes ]; @@ -221637,8 +220459,6 @@ self: { ]; description = "Use network sockets together with the pipes library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pipes-network-tls" = callPackage @@ -221656,7 +220476,6 @@ self: { ]; description = "TLS-secured network connections support for pipes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "pipes-network-ws" = callPackage @@ -221852,8 +220671,8 @@ self: { pname = "pipes-safe"; version = "2.3.4"; sha256 = "1ha0q1dwl52rn59shmk8jhp7grngpiwmp8x4qa9h54flvxkqk12x"; - revision = "1"; - editedCabalFile = "0qhlam3m0zrhl8l5pilxhhgigq56n7wp6cak9hpca3b68bh9wph4"; + revision = "2"; + editedCabalFile = "0g1ib89dwhblc19vc8spcjdc10pg56avs9480i55ab315wjfsna2"; libraryHaskellDepends = [ base containers exceptions monad-control mtl pipes primitive transformers transformers-base @@ -222030,8 +220849,6 @@ self: { ]; description = "Zlib and GZip compression and decompression for Pipes streams"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pisigma" = callPackage @@ -222218,6 +221035,8 @@ self: { ]; description = "Pixiv API binding based on servant-client"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "piyo" = callPackage @@ -222311,29 +221130,6 @@ self: { }) {}; "pkgtreediff" = callPackage - ({ mkDerivation, async, base, directory, extra, filepath, Glob - , http-client, http-client-tls, http-directory, koji, rpm-nvr - , simple-cmd, simple-cmd-args, text - }: - mkDerivation { - pname = "pkgtreediff"; - version = "0.5.0"; - sha256 = "0zlz53adlah00zxbh4kqvpm3vinn0248n8rzdxpdsbrbrlnlj8y9"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base rpm-nvr ]; - executableHaskellDepends = [ - async base directory extra filepath Glob http-client - http-client-tls http-directory koji rpm-nvr simple-cmd - simple-cmd-args text - ]; - description = "RPM package tree diff tool"; - license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - mainProgram = "pkgtreediff"; - }) {}; - - "pkgtreediff_0_6_0" = callPackage ({ mkDerivation, async, base, bytestring, directory, extra , filepath, Glob, http-client, http-client-tls, http-directory , http-types, koji, rpm-nvr, simple-cmd, simple-cmd-args, text @@ -222712,8 +221508,6 @@ self: { ]; description = "run a subprocess, combining stdout and stderr"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "plist" = callPackage @@ -222949,8 +221743,8 @@ self: { }: mkDerivation { pname = "plotlyhs"; - version = "0.2.1"; - sha256 = "1d7cqy22myp6r0x0b00amn64fra0lklb9jy2hd8ic9lxg0nd8pn9"; + version = "0.2.3"; + sha256 = "1j7ns90cjl7gb9nmlsflnikwbsfycnh727hzmb27gaw6s95r047m"; libraryHaskellDepends = [ aeson base blaze-html blaze-markup bytestring lucid microlens microlens-th text time @@ -223000,6 +221794,8 @@ self: { ]; description = "Diagrams based plotting library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "plotserver-api" = callPackage @@ -223013,6 +221809,37 @@ self: { license = lib.licenses.mit; }) {}; + "plow-log" = callPackage + ({ mkDerivation, aeson, base, text }: + mkDerivation { + pname = "plow-log"; + version = "0.1.6.0"; + sha256 = "1vb1842pxh84vm6kbrd40f13qgb91rn4i0c3bv726znmdh0lqdsz"; + revision = "1"; + editedCabalFile = "00lwbgqr65yq8fidpdxr3n57zz3abvmhrpc5pcj03zxj26lkrvkl"; + libraryHaskellDepends = [ aeson base text ]; + description = "Contravariant logging library"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "plow-log-async" = callPackage + ({ mkDerivation, base, conduit, plow-log, stm-conduit, text, time + , unliftio + }: + mkDerivation { + pname = "plow-log-async"; + version = "0.1.4.0"; + sha256 = "14wg7h1vfkc3yal9951k9prhx0v3kkp5hjbbv8lx7c4n4clm1p2m"; + libraryHaskellDepends = [ + base conduit plow-log stm-conduit text time unliftio + ]; + description = "Async IO tracer for plow-log"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "plucky" = callPackage ({ mkDerivation, base, mtl, transformers }: mkDerivation { @@ -223519,6 +222346,7 @@ self: { license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; mainProgram = "poke-exe"; + broken = true; }) {}; "pokemon-go-protobuf-types" = callPackage @@ -223561,7 +222389,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "poker-exe"; - broken = true; }) {}; "poker-base" = callPackage @@ -223584,6 +222411,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "A library for core poker types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "poker-eval" = callPackage @@ -223922,6 +222751,8 @@ self: { ]; description = "Polynomials"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polynomial-algebra" = callPackage @@ -223970,37 +222801,6 @@ self: { }: mkDerivation { pname = "polysemy"; - version = "1.6.0.0"; - sha256 = "1s2hmfp1ii5q8qpxiqm825ykh4fpcq06wphfqbhp7p3sxkkr3c68"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - async base containers first-class-families mtl QuickCheck stm syb - template-haskell th-abstraction transformers type-errors unagi-chan - ]; - testHaskellDepends = [ - async base containers doctest first-class-families hspec - inspection-testing mtl QuickCheck stm syb template-haskell - th-abstraction transformers type-errors unagi-chan - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ - async base containers criterion first-class-families free - freer-simple mtl QuickCheck stm syb template-haskell th-abstraction - transformers type-errors unagi-chan - ]; - description = "Higher-order, low-boilerplate free monads"; - license = lib.licenses.bsd3; - }) {}; - - "polysemy_1_7_1_0" = callPackage - ({ mkDerivation, async, base, Cabal, cabal-doctest, containers - , criterion, doctest, first-class-families, free, freer-simple - , hspec, hspec-discover, inspection-testing, mtl, QuickCheck, stm - , syb, template-haskell, th-abstraction, transformers, type-errors - , unagi-chan - }: - mkDerivation { - pname = "polysemy"; version = "1.7.1.0"; sha256 = "09629gyjdp567dsqk0mgzzk5glrwnpn0cwanank5z3zkqg05d5ac"; setupHaskellDepends = [ base Cabal cabal-doctest ]; @@ -224021,7 +222821,6 @@ self: { ]; description = "Higher-order, low-boilerplate free monads"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "polysemy-RandomFu" = callPackage @@ -224044,6 +222843,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Experimental, RandomFu effect and interpreters for polysemy"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "polysemy-check" = callPackage @@ -224095,8 +222895,8 @@ self: { }: mkDerivation { pname = "polysemy-conc"; - version = "0.10.0.0"; - sha256 = "17683p4j54kapg279cbdxl7j0gyrshcsxcs0xngyaplgajwq6pnk"; + version = "0.11.1.0"; + sha256 = "0kwfvwv4hzbm51sk78k1ka9i3f23jp9r8d0acs4gjnbbjfvv78wk"; libraryHaskellDepends = [ async base containers incipit-core polysemy polysemy-resume polysemy-time stm stm-chans torsor unagi-chan unix @@ -224104,7 +222904,7 @@ self: { testHaskellDepends = [ async base hedgehog incipit-core polysemy polysemy-plugin polysemy-resume polysemy-test polysemy-time stm tasty - tasty-hedgehog time unagi-chan unix + tasty-hedgehog time unix ]; description = "Polysemy effects for concurrency"; license = "BSD-2-Clause-Patent"; @@ -224146,8 +222946,8 @@ self: { }: mkDerivation { pname = "polysemy-fskvstore"; - version = "0.1.1.0"; - sha256 = "1jpiqq65lv1dp7h2wdl2b2czpax6wqwlv4fqh8vhg26pw49mc2lr"; + version = "0.1.2.0"; + sha256 = "165lj55kmra01kxpr26n6a35989qihvwipdxkdbf2gi78xglryrp"; libraryHaskellDepends = [ base bytestring path polysemy polysemy-kvstore rio unliftio-path ]; @@ -224239,8 +223039,8 @@ self: { }: mkDerivation { pname = "polysemy-log"; - version = "0.7.2.0"; - sha256 = "1n206b3g64gdrz488q0y11by25khn5aka9qx37vfg65mrnzald78"; + version = "0.8.0.0"; + sha256 = "0zvlx1y852c1jyaw3lcxps8yb6qk56i8drnfbqvdpss3hb6jhii7"; libraryHaskellDepends = [ ansi-terminal async base incipit-core polysemy polysemy-conc polysemy-time stm time @@ -224257,26 +223057,25 @@ self: { }) {}; "polysemy-log-co" = callPackage - ({ mkDerivation, base, co-log, co-log-polysemy, incipit-core - , polysemy, polysemy-conc, polysemy-log, polysemy-test - , polysemy-time, stm, tasty + ({ mkDerivation, base, co-log, co-log-concurrent, co-log-polysemy + , incipit-core, polysemy, polysemy-conc, polysemy-log + , polysemy-test, polysemy-time, stm, tasty }: mkDerivation { pname = "polysemy-log-co"; - version = "0.7.2.0"; - sha256 = "0g3nxfahlsp97zjmy484dgvwkjvfpf70f1zhd6kvpmk9dik6n9r7"; + version = "0.8.0.0"; + sha256 = "09r4aqkwfjnwnlym97mfasghb3c9jq9vlmqlycz0kgsid8hdjh52"; libraryHaskellDepends = [ - base co-log co-log-polysemy incipit-core polysemy polysemy-conc - polysemy-log polysemy-time stm + base co-log co-log-concurrent co-log-polysemy incipit-core polysemy + polysemy-conc polysemy-log polysemy-time stm ]; testHaskellDepends = [ - base co-log co-log-polysemy incipit-core polysemy polysemy-log - polysemy-test polysemy-time stm tasty + base co-log co-log-concurrent co-log-polysemy incipit-core polysemy + polysemy-log polysemy-test polysemy-time stm tasty ]; description = "Colog adapters for Polysemy.Log"; license = "BSD-2-Clause-Patent"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polysemy-log-di" = callPackage @@ -224286,8 +223085,8 @@ self: { }: mkDerivation { pname = "polysemy-log-di"; - version = "0.7.2.0"; - sha256 = "0v7zwvb7aapr0cslvmn1kzcvvdr9xw4bzqppxkpzia6cnzhbr09y"; + version = "0.8.0.0"; + sha256 = "1gmwrmnw4675y8hzywazjcafd0hkfal7rxpcycz4dpvzsqznrcrz"; libraryHaskellDepends = [ base di-polysemy incipit-core polysemy polysemy-conc polysemy-log polysemy-time stm @@ -224318,8 +223117,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Primitive functions and data types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polysemy-methodology" = callPackage @@ -224351,6 +223148,8 @@ self: { ]; description = "Logging functions for polysemy-methodology"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-methodology-composite" = callPackage @@ -224369,6 +223168,7 @@ self: { ]; description = "Functions for using polysemy-methodology with composite"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "polysemy-mocks" = callPackage @@ -224410,6 +223210,8 @@ self: { libraryHaskellDepends = [ base path polysemy polysemy-extra ]; description = "Polysemy versions of Path functions"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-plugin" = callPackage @@ -224420,29 +223222,6 @@ self: { }: mkDerivation { pname = "polysemy-plugin"; - version = "0.4.1.1"; - sha256 = "0sw0wzasclj4ibzc4g701p1xvs8vzliaflsgyyj9digajjg1m9n7"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - base containers ghc ghc-tcplugins-extra polysemy syb transformers - ]; - testHaskellDepends = [ - base containers doctest ghc ghc-tcplugins-extra hspec - inspection-testing polysemy should-not-typecheck syb transformers - ]; - testToolDepends = [ hspec-discover ]; - description = "Disambiguate obvious uses of effects"; - license = lib.licenses.bsd3; - }) {}; - - "polysemy-plugin_0_4_3_1" = callPackage - ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest - , ghc, ghc-tcplugins-extra, hspec, hspec-discover - , inspection-testing, polysemy, should-not-typecheck, syb - , transformers - }: - mkDerivation { - pname = "polysemy-plugin"; version = "0.4.3.1"; sha256 = "02s9hb0y4fgvmlkg7izwq24hrgb92h1jd7v0gjzayjn6la8xmf6r"; setupHaskellDepends = [ base Cabal cabal-doctest ]; @@ -224456,7 +223235,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Disambiguate obvious uses of effects"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "polysemy-process" = callPackage @@ -224467,8 +223245,8 @@ self: { }: mkDerivation { pname = "polysemy-process"; - version = "0.10.0.0"; - sha256 = "1f0bnpzd1k1aj9f3100z240ljvlw9b5ikafif05bwzcpavsy7zli"; + version = "0.11.1.0"; + sha256 = "09bzjdnj15bv0fnvs99f6x71yqmy0lbsnxbr4w3mxn4yp73sppc1"; libraryHaskellDepends = [ base incipit-core path path-io polysemy polysemy-conc polysemy-resume polysemy-time posix-pty process stm-chans @@ -224520,6 +223298,8 @@ self: { libraryHaskellDepends = [ base polysemy req ]; description = "Polysemy effect for req"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-resume" = callPackage @@ -224561,7 +223341,6 @@ self: { description = "Well-typed filesystem operation effects"; license = lib.licenses.agpl3Plus; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polysemy-several" = callPackage @@ -224586,6 +223365,8 @@ self: { libraryHaskellDepends = [ base bytestring polysemy socket ]; description = "Socket effect for polysemy"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-test" = callPackage @@ -224655,6 +223436,8 @@ self: { ]; description = "Experimental video processing DSL for polysemy"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-vinyl" = callPackage @@ -224672,6 +223455,8 @@ self: { ]; description = "Functions for mapping vinyl records in polysemy"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-webserver" = callPackage @@ -225108,8 +223893,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Static key-value storage backed by poppy"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "poppler" = callPackage @@ -225266,7 +224049,9 @@ self: { executableHaskellDepends = [ base warp ]; description = "A minimalist HTTP server framework written on top of wai"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "porpoise-example"; + broken = true; }) {}; "port-utils" = callPackage @@ -225375,6 +224160,8 @@ self: { pname = "portray"; version = "0.3.0"; sha256 = "059lyc5p7726y9yj7c3by854czhbiwspgrgiqa6qp22pfbx2ycqn"; + revision = "1"; + editedCabalFile = "06bdmmfxav5ah20bdj09rbgvk4ncjicx1r48m3l9xjcczbm28y5m"; libraryHaskellDepends = [ base bytestring containers text wrapped ]; @@ -225392,6 +224179,8 @@ self: { pname = "portray-diff"; version = "0.1.1"; sha256 = "1z09bs62hh9hsf88qkbsqp3ydxr66jdpbp9s8c7d142vcinmi3wm"; + revision = "1"; + editedCabalFile = "1p5ks82k2q59z20kc8nk5aj8n7isjnf0wc07lqv1djlalb3cwwy3"; libraryHaskellDepends = [ base containers dlist portray text wrapped ]; @@ -225406,14 +224195,13 @@ self: { pname = "portray-diff-hunit"; version = "0.1.0.0"; sha256 = "0gig1gvw0s7cl4jbffqh53r7lfs08clkcjpdypjjbpk0815pk34h"; - revision = "3"; - editedCabalFile = "05y5cci0kip5ribjkkinv7nqfvbjsq7z26vj3b170vd7awgfb2xq"; + revision = "5"; + editedCabalFile = "0yz9jfxsrnb5hb694bjgxc7gwl1dw2m54qnm9z9js51fc1kk2ppa"; libraryHaskellDepends = [ base HUnit portray-diff portray-pretty pretty ]; description = "HUnit assertions based on portray-diff"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "portray-diff-quickcheck" = callPackage @@ -225422,14 +224210,13 @@ self: { pname = "portray-diff-quickcheck"; version = "0.1.0.0"; sha256 = "1kif82y8bapf5d3awkfv7wp3ih89q3p14djanyz6jfapryhccm12"; - revision = "3"; - editedCabalFile = "0c6ld7l8k4kk66rikxknq0c6mjc7dwa1bw7bqbajqfdb0jjbaafc"; + revision = "4"; + editedCabalFile = "1jy6qviv8phj2dr79bkrqsaal1xb940hzhynq84vbkgk2szlcwqr"; libraryHaskellDepends = [ base portray-diff portray-pretty QuickCheck ]; description = "QuickCheck tests with portray-diff"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "portray-pretty" = callPackage @@ -225440,6 +224227,8 @@ self: { pname = "portray-pretty"; version = "0.1.0.3"; sha256 = "08gf384mqsxblxzmhr6ipskvipgbdgx72s3nmdhsld53spg5zhd5"; + revision = "1"; + editedCabalFile = "03r638j282ldxzkpw07l7cnp4kxwh3325bcljkn96hs1l6vy5q4j"; libraryHaskellDepends = [ base portray portray-diff pretty text ]; testHaskellDepends = [ base HUnit portray portray-diff pretty test-framework @@ -225447,8 +224236,6 @@ self: { ]; description = "Portray backend for pretty"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "portray-prettyprinter" = callPackage @@ -225460,6 +224247,8 @@ self: { pname = "portray-prettyprinter"; version = "0.2.1"; sha256 = "0dzhzrv6xq67sbf6ivisghlx4pq53h3qh859ai5rs6cikg6xfb7b"; + revision = "1"; + editedCabalFile = "1jz8jpi4in8znsgzcb9kcgv2zgrw2v99zkb311wjwrzk7vgjm9b7"; libraryHaskellDepends = [ base portray portray-diff prettyprinter prettyprinter-ansi-terminal text @@ -225471,8 +224260,6 @@ self: { ]; description = "Portray backend for prettyprinter"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ports" = callPackage @@ -225579,8 +224366,8 @@ self: { ({ mkDerivation, base, data-dword, deepseq, scientific }: mkDerivation { pname = "posit"; - version = "3.2.0.0"; - sha256 = "1qbf413cj0z35gc5dglkrzk5l20fvrcqs964jpn927k37i3dmxx1"; + version = "3.2.0.3"; + sha256 = "02rjcar4dzdxysk2zixqday8nrwa4j8ypcflb1g12a7v5f1xim66"; libraryHaskellDepends = [ base data-dword deepseq scientific ]; testHaskellDepends = [ base ]; license = lib.licenses.bsd3; @@ -225644,8 +224431,8 @@ self: { }: mkDerivation { pname = "posix-api"; - version = "0.3.5.0"; - sha256 = "0ygww5fcikalyqzliqdrcd4n4g8plhr01gz5p6zd0c5f1y9jgw7x"; + version = "0.4.0.0"; + sha256 = "0j4iz6llg8qgi5jfg51asimw3qwzwlacj6ac0rm0a2g0756wf7mv"; libraryHaskellDepends = [ base byte-order byteslice primitive primitive-addr primitive-offset primitive-unlifted run-st @@ -225796,9 +224583,7 @@ self: { ]; description = "Sleep tracker for X11, using XScreenSaver extension and manual input"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "posplyu"; - broken = true; }) {}; "possible" = callPackage @@ -225940,31 +224725,6 @@ self: { }: mkDerivation { pname = "postgresql-binary"; - version = "0.12.5"; - sha256 = "0fnc97mw4c0aipbqih8jz23ma8xrspgw7r56qq3vzl4k2p9z49vj"; - libraryHaskellDepends = [ - aeson base binary-parser bytestring bytestring-strict-builder - containers network-ip scientific text time transformers - unordered-containers uuid vector - ]; - testHaskellDepends = [ - aeson network-ip postgresql-libpq QuickCheck quickcheck-instances - rerebase tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ criterion rerebase ]; - description = "Encoders and decoders for the PostgreSQL's binary format"; - license = lib.licenses.mit; - }) {}; - - "postgresql-binary_0_13_1" = callPackage - ({ mkDerivation, aeson, base, binary-parser, bytestring - , bytestring-strict-builder, containers, criterion, network-ip - , postgresql-libpq, QuickCheck, quickcheck-instances, rerebase - , scientific, tasty, tasty-hunit, tasty-quickcheck, text, time - , transformers, unordered-containers, uuid, vector - }: - mkDerivation { - pname = "postgresql-binary"; version = "0.13.1"; sha256 = "0l8rnsjmxskhlry1p34y1mfcrzwm382v4y2zcwsjhj5r09ihzkm2"; libraryHaskellDepends = [ @@ -225979,7 +224739,6 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "Encoders and decoders for the PostgreSQL's binary format"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "postgresql-common" = callPackage @@ -225996,6 +224755,8 @@ self: { ]; description = "Library for sharing common PostgreSQL types across Haskell PostgreSQL libraries"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-common-persistent" = callPackage @@ -226014,6 +224775,7 @@ self: { ]; description = "Persistent compatibility for postgresql-common"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "postgresql-config" = callPackage @@ -226069,6 +224831,8 @@ self: { libraryHaskellDepends = [ base bytestring postgresql-simple ]; description = "Cube support for postgresql-simple"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-error-codes" = callPackage @@ -226217,7 +224981,9 @@ self: { executableHaskellDepends = [ base filepath ]; description = "An ORM (Object Relational Mapping) and migrations DSL for PostgreSQL"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "pg_migrate"; + broken = true; }) {}; "postgresql-placeholder-converter" = callPackage @@ -226285,39 +225051,6 @@ self: { "postgresql-query" = callPackage ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring - , containers, data-default, exceptions, file-embed - , generic-arbitrary, haskell-src-meta, hreader, hset, inflections - , monad-control, monad-logger, mtl, postgresql-simple, QuickCheck - , quickcheck-assertions, quickcheck-instances, resource-pool - , semigroups, tasty, tasty-hunit, tasty-quickcheck, tasty-th - , template-haskell, text, th-lift, th-lift-instances, time - , transformers, transformers-base, transformers-compat - }: - mkDerivation { - pname = "postgresql-query"; - version = "3.9.0"; - sha256 = "1520crprhdnan7w5qm9h42r6cxz4v6zffwwfvybzwpczj2g3laa6"; - libraryHaskellDepends = [ - aeson attoparsec base blaze-builder bytestring containers - data-default exceptions file-embed haskell-src-meta hreader hset - inflections monad-control monad-logger mtl postgresql-simple - resource-pool semigroups template-haskell text th-lift - th-lift-instances time transformers transformers-base - transformers-compat - ]; - testHaskellDepends = [ - attoparsec base generic-arbitrary postgresql-simple QuickCheck - quickcheck-assertions quickcheck-instances tasty tasty-hunit - tasty-quickcheck tasty-th text time - ]; - description = "Sql interpolating quasiquote plus some kind of primitive ORM using it"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "postgresql-query_3_10_0" = callPackage - ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring , containers, data-default, doctest, exceptions, file-embed , generic-arbitrary, haskell-src-meta, hreader, hset, inflections , monad-control, monad-logger, mtl, postgresql-simple, QuickCheck @@ -226368,7 +225101,9 @@ self: { testHaskellDepends = [ base binary bytestring cereal hspec ]; description = "PostgreSQL logical streaming replication library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "replicant-example"; + broken = true; }) {}; "postgresql-resilient" = callPackage @@ -226417,6 +225152,37 @@ self: { }: mkDerivation { pname = "postgresql-simple"; + version = "0.6.4"; + sha256 = "0rz2bklxp4pvbxb2w49h5p6pbwabn6d5d4j4mrya4fpa0d13k43d"; + revision = "8"; + editedCabalFile = "1qavb3qs1g307pc19k9y3yvqp0c1srwsplijvayn9ldp0bxdy6q8"; + libraryHaskellDepends = [ + aeson attoparsec base bytestring bytestring-builder + case-insensitive containers hashable Only postgresql-libpq + scientific template-haskell text time-compat transformers + uuid-types vector + ]; + testHaskellDepends = [ + aeson base base16-bytestring bytestring case-insensitive containers + cryptohash-md5 filepath HUnit inspection-testing postgresql-libpq + tasty tasty-golden tasty-hunit text time-compat vector + ]; + benchmarkHaskellDepends = [ base vector ]; + description = "Mid-Level PostgreSQL client library"; + license = lib.licenses.bsd3; + maintainers = [ lib.maintainers.maralorn ]; + }) {}; + + "postgresql-simple_0_6_5" = callPackage + ({ mkDerivation, aeson, attoparsec, base, base16-bytestring + , bytestring, bytestring-builder, case-insensitive, containers + , cryptohash-md5, filepath, hashable, HUnit, inspection-testing + , Only, postgresql-libpq, scientific, tasty, tasty-golden + , tasty-hunit, template-haskell, text, time-compat, transformers + , uuid-types, vector + }: + mkDerivation { + pname = "postgresql-simple"; version = "0.6.5"; sha256 = "15jy8lp9200whyxk421yw3m671cjz41cnv2j8wll1giblyr3m9gx"; libraryHaskellDepends = [ @@ -226433,6 +225199,7 @@ self: { benchmarkHaskellDepends = [ base vector ]; description = "Mid-Level PostgreSQL client library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -226519,7 +225286,9 @@ self: { testHaskellDepends = [ base bytestring hspec postgresql-simple ]; description = "PostgreSQL Schema Migrations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "migrate"; + broken = true; }) {}; "postgresql-simple-named" = callPackage @@ -226630,8 +225399,8 @@ self: { pname = "postgresql-simple-url"; version = "0.2.1.0"; sha256 = "1jg9gvpidrfy2hqixwqsym1l1mnkafmxwq58jpbzdmrbvryga1qk"; - revision = "5"; - editedCabalFile = "17l5iq6c4yjw3gswgav398cbih5105m05ak68kdibv6jjazkqw7p"; + revision = "6"; + editedCabalFile = "1pvfb61ys58s66dass8qfaxrd4pbkbk8hsbrijds6gybcx3a7nhy"; libraryHaskellDepends = [ base network-uri postgresql-simple split ]; @@ -226676,8 +225445,6 @@ self: { ]; description = "a transactional monad on top of postgresql-simple"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "postgresql-tx" = callPackage @@ -226700,6 +225467,8 @@ self: { libraryHaskellDepends = [ base monad-logger postgresql-tx ]; description = "postgresql-tx interfacing for use with monad-logger"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-tx-query" = callPackage @@ -226754,7 +225523,6 @@ self: { description = "postgresql-tx interfacing for use with squeal-postgresql"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "postgresql-tx-squeal-compat-simple" = callPackage @@ -226780,8 +225548,8 @@ self: { }: mkDerivation { pname = "postgresql-typed"; - version = "0.6.2.1"; - sha256 = "15zrsg2zz2jgzb1v0g13c98hfrmnkcjakqpdy2zhbfr6ibivlhkx"; + version = "0.6.2.2"; + sha256 = "0khc6bc1gvlhvrmpgj4ilazimwpjvd2p83lfbbpip9dpj2b5h2ri"; libraryHaskellDepends = [ aeson array attoparsec base binary bytestring containers cryptonite data-default haskell-src-meta HDBC memory network old-locale @@ -226859,9 +225627,7 @@ self: { ]; description = "REST API for any Postgres database"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "postgrest"; - broken = true; }) {}; "postgrest-ws" = callPackage @@ -227167,6 +225933,8 @@ self: { ]; description = "PowerDNS API bindings for api/v1"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "powermate" = callPackage @@ -227757,8 +226525,8 @@ self: { }: mkDerivation { pname = "prelate"; - version = "0.2.0.0"; - sha256 = "03620awa3yh3jfzqzr2i6gbhg4wfq33v7m42rzwnr6j83pkd59im"; + version = "0.3.0.0"; + sha256 = "13qrk305k5mgpkhjhk92zs0rp3y68k7rhj5d3cqj785bvyvpz3wh"; libraryHaskellDepends = [ aeson base exon extra generic-lens incipit microlens microlens-ghc polysemy-chronos polysemy-conc polysemy-log polysemy-process @@ -228108,6 +226876,8 @@ self: { ]; description = "Pretty-printing library"; license = "GPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pretty-diff" = callPackage @@ -228290,31 +227060,6 @@ self: { "pretty-simple" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, containers, criterion - , doctest, Glob, mtl, prettyprinter, prettyprinter-ansi-terminal - , QuickCheck, template-haskell, text, transformers - }: - mkDerivation { - pname = "pretty-simple"; - version = "4.0.0.0"; - sha256 = "1srvx854ml2gffnkxr2fm12xk8syjsk078rfzrq0a3idwgv46myw"; - isLibrary = true; - isExecutable = true; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - base containers mtl prettyprinter prettyprinter-ansi-terminal text - transformers - ]; - testHaskellDepends = [ - base doctest Glob QuickCheck template-haskell - ]; - benchmarkHaskellDepends = [ base criterion text ]; - description = "pretty printer for data types with a 'Show' instance"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.cdepillabout ]; - }) {}; - - "pretty-simple_4_1_2_0" = callPackage - ({ mkDerivation, base, Cabal, cabal-doctest, containers, criterion , doctest, Glob, mtl, optparse-applicative, prettyprinter , prettyprinter-ansi-terminal, QuickCheck, template-haskell, text , transformers @@ -228337,7 +227082,6 @@ self: { benchmarkHaskellDepends = [ base criterion text ]; description = "pretty printer for data types with a 'Show' instance"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "pretty-simple"; maintainers = [ lib.maintainers.cdepillabout ]; }) {}; @@ -228676,8 +227420,6 @@ self: { benchmarkHaskellDepends = [ base criterion ghc-prim spoon ]; description = "Catch errors thrown from pure computations using primops"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "prim-uniq" = callPackage @@ -228913,7 +227655,6 @@ self: { description = "containers backed by arrays"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "primitive-convenience" = callPackage @@ -229042,16 +227783,20 @@ self: { }: mkDerivation { pname = "primitive-sort"; - version = "0.1.1.0"; - sha256 = "0ixx8cvjzsl93lr6pxppyiv12rgwaxh5xv4m56f6b81cxqdx97f2"; + version = "0.1.2.0"; + sha256 = "0nalkfycg9fpvwi8h2a4k31wmmn1ny16b43kj75gxcpmbc4x6azz"; libraryHaskellDepends = [ base contiguous ghc-prim primitive ]; testHaskellDepends = [ base containers doctest HUnit primitive QuickCheck smallcheck tasty tasty-hunit tasty-quickcheck tasty-smallcheck ]; - benchmarkHaskellDepends = [ base gauge ghc-prim primitive random ]; + benchmarkHaskellDepends = [ + base contiguous gauge ghc-prim primitive random + ]; description = "Sort primitive arrays"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "primitive-stablename" = callPackage @@ -229690,7 +228435,6 @@ self: { libraryHaskellDepends = [ base directory mmsyn3 process sublists ]; description = "A test suite for the complex multi files multi level processment"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "process-streaming" = callPackage @@ -230249,6 +228993,7 @@ self: { description = "A project initialization library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "project-m36" = callPackage @@ -230325,6 +229070,7 @@ self: { description = "Relational Algebra Engine"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "project-template" = callPackage @@ -230582,6 +229328,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "test"; + broken = true; }) {}; "prometheus-metrics-ghc" = callPackage @@ -230614,6 +229361,8 @@ self: { ]; description = "Export metrics from /proc for the current process"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "prometheus-wai-middleware" = callPackage @@ -230694,6 +229443,29 @@ self: { broken = true; }) {}; + "proof-assistant-bot" = callPackage + ({ mkDerivation, Agda, async, base, bytestring, dhall, directory + , filepath, mtl, process, rzk, stm, telegram-bot-simple, text, unix + , unordered-containers + }: + mkDerivation { + pname = "proof-assistant-bot"; + version = "0.2.0"; + sha256 = "1sks81xaxzz76ajcki43jy7a95d6lc5ijj3xgl5slmjd5m4fmwyc"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + Agda async base bytestring dhall directory filepath mtl process rzk + stm telegram-bot-simple text unix unordered-containers + ]; + executableHaskellDepends = [ base ]; + description = "Telegram bot for proof assistants"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "proof-assistant-bot"; + broken = true; + }) {rzk = null;}; + "proof-combinators" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -230712,8 +229484,8 @@ self: { }: mkDerivation { pname = "prop-unit"; - version = "0.1.0"; - sha256 = "1sz04samdhac9czcym2rra5fgncccvj6hjsymljxsvgcs2h7429i"; + version = "0.1.1"; + sha256 = "0adxa0fkrvp9jgcqv4919g59alc4a6p9lnv3r647hf4mjlywgvkg"; libraryHaskellDepends = [ base hedgehog tasty tasty-hedgehog ]; testHaskellDepends = [ base hedgehog tasty tasty-hedgehog tasty-hunit @@ -230757,8 +229529,8 @@ self: { }: mkDerivation { pname = "propellor"; - version = "5.14.1"; - sha256 = "1lbqd4mj8mjk1l2pcqjw214w9znnp9mbs8z7dxi5spd819vw0d2d"; + version = "5.15"; + sha256 = "0106ayiadnam0mz1836la0fya4s82cv591r3vc6cdyafzpjzjphk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -230939,6 +229711,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Simple audio library for Windows, Linux, OSX"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {libpulse = null; libpulse-simple = null; inherit (pkgs) libpulseaudio;}; @@ -230956,6 +229730,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Simple audio library for SDL"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) SDL2;}; "proteome" = callPackage @@ -231335,6 +230111,8 @@ self: { ]; description = "Parse Google Protocol Buffer specifications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "protocol-buffers-descriptor" = callPackage @@ -231351,6 +230129,7 @@ self: { ]; description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "protocol-buffers-descriptor-fork" = callPackage @@ -231626,7 +230405,9 @@ self: { ]; description = "Prune unused Haskell dependencies"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "prune-juice"; + broken = true; }) {}; "psc-ide" = callPackage @@ -231721,6 +230502,8 @@ self: { ]; description = "Yet another custom Prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "psql" = callPackage @@ -231979,6 +230762,8 @@ self: { ]; description = "Pipe stdin to a redis pub/sub channel"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "publicsuffix" = callPackage @@ -232115,7 +230900,6 @@ self: { description = "A library for Google/SixApart pubsub hub interaction"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "puffytools" = callPackage @@ -232550,75 +231334,70 @@ self: { }) {}; "purescript" = callPackage - ({ mkDerivation, aeson, aeson-better-errors, aeson-pretty - , ansi-terminal, ansi-wl-pprint, array, base, blaze-html - , bower-json, boxes, bytestring, Cabal, cborg, cheapskate, clock - , containers, cryptonite, data-ordlist, deepseq, directory, dlist - , edit-distance, exceptions, file-embed, filepath, fsnotify - , generic-random, gitrev, Glob, happy, haskeline, hspec - , hspec-discover, http-types, HUnit, language-javascript, lens - , lifted-async, lifted-base, memory, monad-control, monad-logger - , monoidal-containers, mtl, network, newtype, optparse-applicative - , parallel, parsec, pattern-arrows, process, protolude, QuickCheck - , regex-base, regex-tdfa, safe, scientific, semialign, semigroups - , serialise, sourcemap, split, stm, stringsearch, syb, text, these - , time, transformers, transformers-base, transformers-compat - , typed-process, unordered-containers, utf8-string, vector - , witherable + ({ mkDerivation, aeson, aeson-better-errors, ansi-terminal + , ansi-wl-pprint, array, base, blaze-html, bower-json, boxes + , bytestring, Cabal, cborg, cheapskate, clock, containers + , cryptonite, data-ordlist, deepseq, directory, dlist + , edit-distance, exceptions, file-embed, filepath, generic-random + , gitrev, Glob, happy, haskeline, hspec, hspec-discover, HUnit + , language-javascript, lens, lifted-async, lifted-base, memory + , monad-control, monad-logger, monoidal-containers, mtl, network + , newtype, optparse-applicative, parallel, parsec, pattern-arrows + , process, protolude, QuickCheck, regex-base, regex-tdfa, safe + , scientific, semialign, semigroups, serialise, sourcemap, split + , stm, stringsearch, template-haskell, text, these, time + , transformers, transformers-base, typed-process, utf8-string + , vector, witherable }: mkDerivation { pname = "purescript"; - version = "0.15.6"; - sha256 = "19p8jzn76vc5w4g95y36vfhih1s5kq12dvczvfb7zkmn3n6n3g3m"; + version = "0.15.7"; + sha256 = "1krjkgmxpfqf5a1jqs7qbg6r7ball1464zw6vgrdfzl9057c6l4f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson aeson-better-errors aeson-pretty ansi-terminal array base - blaze-html bower-json boxes bytestring Cabal cborg cheapskate clock - containers cryptonite data-ordlist deepseq directory dlist - edit-distance file-embed filepath fsnotify Glob haskeline - language-javascript lens lifted-async lifted-base memory - monad-control monad-logger monoidal-containers mtl parallel parsec - pattern-arrows process protolude regex-tdfa safe scientific - semialign semigroups serialise sourcemap split stm stringsearch syb - text these time transformers transformers-base transformers-compat - typed-process unordered-containers utf8-string vector witherable + aeson aeson-better-errors ansi-terminal array base blaze-html + bower-json boxes bytestring Cabal cborg cheapskate clock containers + cryptonite data-ordlist deepseq directory dlist edit-distance + file-embed filepath Glob haskeline language-javascript lens + lifted-async lifted-base memory monad-control monad-logger + monoidal-containers mtl parallel parsec pattern-arrows process + protolude regex-tdfa safe scientific semialign semigroups serialise + sourcemap stm stringsearch template-haskell text these time + transformers transformers-base utf8-string vector witherable ]; libraryToolDepends = [ happy ]; executableHaskellDepends = [ - aeson aeson-better-errors aeson-pretty ansi-terminal ansi-wl-pprint - array base blaze-html bower-json boxes bytestring Cabal cborg - cheapskate clock containers cryptonite data-ordlist deepseq - directory dlist edit-distance exceptions file-embed filepath - fsnotify gitrev Glob haskeline http-types language-javascript lens - lifted-async lifted-base memory monad-control monad-logger - monoidal-containers mtl network optparse-applicative parallel - parsec pattern-arrows process protolude regex-tdfa safe scientific - semialign semigroups serialise sourcemap split stm stringsearch syb - text these time transformers transformers-base transformers-compat - typed-process unordered-containers utf8-string vector witherable + aeson aeson-better-errors ansi-terminal ansi-wl-pprint array base + blaze-html bower-json boxes bytestring Cabal cborg cheapskate clock + containers cryptonite data-ordlist deepseq directory dlist + edit-distance exceptions file-embed filepath gitrev Glob haskeline + language-javascript lens lifted-async lifted-base memory + monad-control monad-logger monoidal-containers mtl network + optparse-applicative parallel parsec pattern-arrows process + protolude regex-tdfa safe scientific semialign semigroups serialise + sourcemap stm stringsearch template-haskell text these time + transformers transformers-base utf8-string vector witherable ]; executableToolDepends = [ happy ]; testHaskellDepends = [ - aeson aeson-better-errors aeson-pretty ansi-terminal array base - blaze-html bower-json boxes bytestring Cabal cborg cheapskate clock - containers cryptonite data-ordlist deepseq directory dlist - edit-distance file-embed filepath fsnotify generic-random Glob - haskeline hspec HUnit language-javascript lens lifted-async - lifted-base memory monad-control monad-logger monoidal-containers - mtl newtype parallel parsec pattern-arrows process protolude - QuickCheck regex-base regex-tdfa safe scientific semialign - semigroups serialise sourcemap split stm stringsearch syb text - these time transformers transformers-base transformers-compat - typed-process unordered-containers utf8-string vector witherable + aeson aeson-better-errors ansi-terminal array base blaze-html + bower-json boxes bytestring Cabal cborg cheapskate clock containers + cryptonite data-ordlist deepseq directory dlist edit-distance + file-embed filepath generic-random Glob haskeline hspec HUnit + language-javascript lens lifted-async lifted-base memory + monad-control monad-logger monoidal-containers mtl newtype parallel + parsec pattern-arrows process protolude QuickCheck regex-base + regex-tdfa safe scientific semialign semigroups serialise sourcemap + split stm stringsearch template-haskell text these time + transformers transformers-base typed-process utf8-string vector + witherable ]; testToolDepends = [ happy hspec-discover ]; doCheck = false; description = "PureScript Programming Language Compiler"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "purs"; - broken = true; }) {}; "purescript-ast" = callPackage @@ -232636,6 +231415,8 @@ self: { ]; description = "PureScript Programming Language Abstract Syntax Tree"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "purescript-bridge" = callPackage @@ -232693,6 +231474,8 @@ self: { libraryToolDepends = [ happy ]; description = "PureScript Programming Language Concrete Syntax Tree"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "purescript-iso" = callPackage @@ -232858,7 +231641,6 @@ self: { testHaskellDepends = [ aeson base hspec ]; description = "Send push notifications to mobile iOS devices"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sendapn"; }) {}; @@ -233176,8 +231958,6 @@ self: { ]; description = "Fast persistent vectors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pvss" = callPackage @@ -233369,8 +232149,6 @@ self: { ]; description = "Types and prettyprinter for the IL of the QBE compiler backend"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "qc-oi-testgenerator" = callPackage @@ -233609,7 +232387,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "qnap-decrypt"; - broken = true; }) {}; "qq-literals" = callPackage @@ -233695,6 +232472,8 @@ self: { libraryHaskellDepends = [ array base containers mtl vector ]; description = "QR Code library in pure Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "qrcode-core" = callPackage @@ -233776,6 +232555,7 @@ self: { librarySystemDepends = [ qtbase ]; description = "Qt bindings for Haskell - C++ library"; license = lib.licenses.lgpl3Only; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs.qt5) qtbase;}; "qtah-examples" = callPackage @@ -233815,6 +232595,7 @@ self: { executableHaskellDepends = [ base ]; description = "Generator for Qtah Qt bindings"; license = lib.licenses.lgpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "qtah-generator"; }) {}; @@ -233883,6 +232664,8 @@ self: { testHaskellDepends = [ base text ]; description = "GHC plugin to automatically insert qualified imports"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "quandl-api" = callPackage @@ -233923,7 +232706,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; }) {}; "quantification" = callPackage @@ -234057,7 +232839,6 @@ self: { license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "qudb"; - broken = true; }) {}; "quenya-verb" = callPackage @@ -234252,7 +233033,6 @@ self: { testHaskellDepends = [ base bytestring tasty tasty-hunit ]; description = "queue sheet utility"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "queue-sheet"; }) {}; @@ -234368,6 +233148,7 @@ self: { testHaskellDepends = [ base ]; description = "quick & easy benchmarking of command-line programs"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "quickbench"; }) {}; @@ -234388,6 +233169,7 @@ self: { description = "QuickBooks API binding"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "quickcheck-arbitrary-adt" = callPackage @@ -234480,7 +233262,6 @@ self: { sha256 = "0qdjls949kmcv8wj3a27p4dz8nb1dq4i99zizkw7qyqn47r9ccxd"; libraryHaskellDepends = [ base QuickCheck unfoldable-restricted ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "quickcheck-dynamic" = callPackage @@ -234563,8 +233344,8 @@ self: { }: mkDerivation { pname = "quickcheck-lockstep"; - version = "0.2.0"; - sha256 = "1vc0ry2qp4c99pql6mgb4csffsjs9qgwciz58g68wbrjqp7rgm2w"; + version = "0.2.1"; + sha256 = "1kw5bp9yih8z3z7plczwld5xdg46slylszmpd63d2fiq2fx7ii7r"; libraryHaskellDepends = [ base constraints containers mtl QuickCheck quickcheck-dynamic ]; @@ -234574,8 +233355,6 @@ self: { ]; description = "Library for lockstep-style testing with 'quickcheck-dynamic'"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "quickcheck-poly" = callPackage @@ -234877,6 +233656,7 @@ self: { description = "Utilities for using WebDriver with QuickCheck"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "quickcheck-with-counterexamples" = callPackage @@ -235607,8 +234387,8 @@ self: { }: mkDerivation { pname = "raaz"; - version = "0.3.6"; - sha256 = "0h6jc7093r9z729pmy0p9rsyg6nz3yksrkmj2pn6n6ddyw0cfp21"; + version = "0.3.7"; + sha256 = "1sx2p1xqash0737z0s5hg2848j9zf02941ksmwd7dlmfaz35x57h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -235767,6 +234547,8 @@ self: { ]; description = "Radix tree data structive over short byte-strings"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "radixtree" = callPackage @@ -236172,7 +234954,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "randfile"; - broken = true; }) {}; "rando" = callPackage @@ -236331,7 +235112,6 @@ self: { description = "Additional functions for random values"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "random-fu" = callPackage @@ -236420,6 +235200,8 @@ self: { ]; description = "Generic basis for random number generators"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "random-stream" = callPackage @@ -236449,6 +235231,8 @@ self: { ]; description = "Generate a random base 16, 58, or 64 string"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "random-strings" = callPackage @@ -236615,7 +235399,6 @@ self: { testHaskellDepends = [ base doctest typecheck-plugin-nat-simple ]; description = "The list like structure whose length or range of length can be specified"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "rangemin" = callPackage @@ -236702,27 +235485,6 @@ self: { }) {}; "rank2classes" = callPackage - ({ mkDerivation, base, Cabal, cabal-doctest, distributive, doctest - , markdown-unlit, tasty, tasty-hunit, template-haskell - , transformers - }: - mkDerivation { - pname = "rank2classes"; - version = "1.4.4"; - sha256 = "0c220gxk7dzn2gb0g34bvjjwjw5ir5i8qa089mcpyqqaba8jzxaw"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - base distributive template-haskell transformers - ]; - testHaskellDepends = [ - base distributive doctest tasty tasty-hunit - ]; - testToolDepends = [ markdown-unlit ]; - description = "standard type constructor class hierarchy, only with methods of rank 2 types"; - license = lib.licenses.bsd3; - }) {}; - - "rank2classes_1_4_6" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, data-functor-logistic , distributive, doctest, markdown-unlit, tasty, tasty-hunit , template-haskell, transformers @@ -236742,7 +235504,6 @@ self: { testToolDepends = [ markdown-unlit ]; description = "standard type constructor class hierarchy, only with methods of rank 2 types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "rapid" = callPackage @@ -237208,8 +235969,8 @@ self: { }: mkDerivation { pname = "rattletrap"; - version = "11.2.4"; - sha256 = "0cqk2sfh4brm94zvy3d23khxl2x7zrjc0c62ww96549qpvp8za4y"; + version = "11.2.14"; + sha256 = "0r879vbdhv77l14wzv03s8hlhmmzzfl6igkwnclr9lq8ncbafrxm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -237225,14 +235986,14 @@ self: { broken = true; }) {}; - "rattletrap_11_2_14" = callPackage + "rattletrap_12_0_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring , containers, filepath, http-client, http-client-tls, text }: mkDerivation { pname = "rattletrap"; - version = "11.2.14"; - sha256 = "0r879vbdhv77l14wzv03s8hlhmmzzfl6igkwnclr9lq8ncbafrxm"; + version = "12.0.0"; + sha256 = "0l20d9m84mn6gkmi7hii0q80rs7nzhbmwp1dx3i5jkww42ixbyfi"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -237538,8 +236299,6 @@ self: { ]; description = "Representation and Incremental Processing of RDF Data"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "rdf4h" = callPackage @@ -238206,6 +236965,8 @@ self: { ]; description = "Vinyl-based reader-like monad composition"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "readline" = callPackage @@ -238479,27 +237240,6 @@ self: { }: mkDerivation { pname = "rebase"; - version = "1.15.0.3"; - sha256 = "1dck3800mz307jriz6mcv2dn2lwglgvlpiiy759xn56774h503zj"; - libraryHaskellDepends = [ - base bifunctors bytestring comonad containers contravariant deepseq - dlist either groups hashable invariant mtl profunctors scientific - selective semigroupoids stm text time time-compat transformers - unordered-containers uuid-types vector vector-instances void - ]; - description = "A more progressive alternative to the \"base\" package"; - license = lib.licenses.mit; - }) {}; - - "rebase_1_16_1" = callPackage - ({ mkDerivation, base, bifunctors, bytestring, comonad, containers - , contravariant, deepseq, dlist, either, groups, hashable - , invariant, mtl, profunctors, scientific, selective, semigroupoids - , stm, text, time, time-compat, transformers, unordered-containers - , uuid-types, vector, vector-instances, void - }: - mkDerivation { - pname = "rebase"; version = "1.16.1"; sha256 = "0mb1x5p3lvfhxsrnmkhsv6f4rd1cxp6m3qg6kyz30svrbwxsvvkz"; revision = "1"; @@ -238512,7 +237252,6 @@ self: { ]; description = "A more progressive alternative to the \"base\" package"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "rebindable" = callPackage @@ -238703,8 +237442,6 @@ self: { ]; testHaskellDepends = [ base time ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "record-operations" = callPackage @@ -238806,6 +237543,8 @@ self: { ]; description = "Record subtyping and record utilities with generics-sop"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "records-th" = callPackage @@ -238894,8 +237633,6 @@ self: { ]; description = "Amateur addenda to recursion-schemes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "recursion-schemes-ix" = callPackage @@ -238913,7 +237650,6 @@ self: { description = "Recursion schemes over indexed Functors"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "recursive-line-count" = callPackage @@ -239121,6 +237857,24 @@ self: { license = lib.licenses.mit; }) {}; + "redis-glob" = callPackage + ({ mkDerivation, ascii-char, ascii-superset, base, bytestring + , hspec, megaparsec, QuickCheck + }: + mkDerivation { + pname = "redis-glob"; + version = "0.1.0.2"; + sha256 = "0lm0bnl562bvxl3mdh0qkjl6jj10zglmyg4qwlylx3qicpdqf4lw"; + libraryHaskellDepends = [ + ascii-char ascii-superset base bytestring megaparsec + ]; + testHaskellDepends = [ + ascii-char ascii-superset base bytestring hspec QuickCheck + ]; + description = "Specify valid redis globs"; + license = lib.licenses.bsd3; + }) {}; + "redis-hs" = callPackage ({ mkDerivation, base, bytestring, network, utf8-string }: mkDerivation { @@ -239160,6 +237914,7 @@ self: { ]; description = "Yet another redis client"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "redis-job-queue" = callPackage @@ -239232,6 +237987,7 @@ self: { ]; description = "Combine redis caching and haxl"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "redland" = callPackage @@ -239390,6 +238146,8 @@ self: { ]; description = "Extra stuff for mutable references"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ref-fd" = callPackage @@ -239521,23 +238279,6 @@ self: { }: mkDerivation { pname = "refined"; - version = "0.6.3"; - sha256 = "1fpbwzr3q9fmkdghpap0zm56bi9wj6n6k0ys5b8ci5xhz25mrd4g"; - libraryHaskellDepends = [ - aeson base bytestring deepseq exceptions hashable mtl QuickCheck - template-haskell text these-skinny - ]; - testHaskellDepends = [ base QuickCheck ]; - description = "Refinement types with static and runtime checking"; - license = lib.licenses.mit; - }) {}; - - "refined_0_8" = callPackage - ({ mkDerivation, aeson, base, bytestring, deepseq, exceptions - , hashable, mtl, QuickCheck, template-haskell, text, these-skinny - }: - mkDerivation { - pname = "refined"; version = "0.8"; sha256 = "0qkzmnycg5pda259lxfy9s03cyi9knvxx9934bihh5vl9bb7sirs"; libraryHaskellDepends = [ @@ -239547,7 +238288,6 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Refinement types with static and runtime checking"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "refined-http-api-data" = callPackage @@ -239638,46 +238378,6 @@ self: { }) {}; "reflex" = callPackage - ({ mkDerivation, base, bifunctors, comonad, constraints - , constraints-extras, containers, criterion, data-default, deepseq - , dependent-map, dependent-sum, directory, exception-transformers - , filemanip, filepath, haskell-src-exts, haskell-src-meta, hlint - , hspec, lens, loch-th, MemoTrie, mmorph, monad-control - , monoidal-containers, mtl, patch, prim-uniq, primitive, process - , proctest, profunctors, random, ref-tf, reflection, semialign - , semigroupoids, split, stm, syb, template-haskell, text, these - , these-lens, time, transformers, unbounded-delays, witherable - }: - mkDerivation { - pname = "reflex"; - version = "0.8.2.0"; - sha256 = "1hvagxcs413bqairxf77vp19484mxnbfckhd44wv22ncwfh5mq6d"; - revision = "3"; - editedCabalFile = "1sax4fx7pgn85dvih4y6mnvhdq8nssan1rcys5kdfhirnr4vgn1m"; - libraryHaskellDepends = [ - base bifunctors comonad constraints constraints-extras containers - data-default dependent-map dependent-sum exception-transformers - haskell-src-exts haskell-src-meta lens MemoTrie mmorph - monad-control monoidal-containers mtl patch prim-uniq primitive - profunctors random ref-tf reflection semialign semigroupoids stm - syb template-haskell these time transformers unbounded-delays - witherable - ]; - testHaskellDepends = [ - base bifunctors constraints constraints-extras containers deepseq - dependent-map dependent-sum directory filemanip filepath hlint - hspec lens monoidal-containers mtl patch proctest ref-tf semialign - split text these these-lens transformers witherable - ]; - benchmarkHaskellDepends = [ - base containers criterion deepseq dependent-map dependent-sum - loch-th mtl primitive process ref-tf split stm time transformers - ]; - description = "Higher-order Functional Reactive Programming"; - license = lib.licenses.bsd3; - }) {}; - - "reflex_0_8_2_1" = callPackage ({ mkDerivation, base, bifunctors, commutative-semigroups, comonad , constraints, constraints-extras, containers, criterion , data-default, deepseq, dependent-map, dependent-sum, directory @@ -239691,8 +238391,8 @@ self: { }: mkDerivation { pname = "reflex"; - version = "0.8.2.1"; - sha256 = "1w8smiwn86cxb3fsfgyzxpk11hryhxi6g94m52grmnx6vhc7sm6v"; + version = "0.8.2.2"; + sha256 = "1add5bcsyq2k02w2q0ifbyfcvcic1hmjdbgxg8ajd5riam0lhb16"; libraryHaskellDepends = [ base bifunctors commutative-semigroups comonad constraints constraints-extras containers data-default dependent-map @@ -239716,7 +238416,6 @@ self: { ]; description = "Higher-order Functional Reactive Programming"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "reflex-animation" = callPackage @@ -239755,6 +238454,8 @@ self: { ]; description = "Reflex bindings for TCP sockets"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reflex-backend-wai" = callPackage @@ -239880,47 +238581,6 @@ self: { "reflex-dom-core" = callPackage ({ mkDerivation, aeson, async, base, bifunctors, bimap , blaze-builder, bytestring, case-insensitive, chrome-test-utils - , constraints, constraints-extras, containers, contravariant - , data-default, dependent-map, dependent-sum - , dependent-sum-template, directory, exception-transformers - , exceptions, filepath, ghcjs-dom, hlint, hspec, hspec-core - , hspec-webdriver, http-types, HUnit, jsaddle, jsaddle-warp - , keycode, lens, lifted-base, monad-control, mtl, network - , network-uri, primitive, process, random, ref-tf, reflex - , semialign, semigroups, silently, stm, template-haskell, temporary - , text, these, transformers, unix, wai, wai-websockets, warp - , webdriver, websockets, which, zenc - }: - mkDerivation { - pname = "reflex-dom-core"; - version = "0.7.0.1"; - sha256 = "0lhi04i5wfkgblcifah6znkwi6v7294pna48527ns74f0bjc7yy3"; - libraryHaskellDepends = [ - aeson base bifunctors bimap blaze-builder bytestring - case-insensitive constraints containers contravariant data-default - dependent-map dependent-sum dependent-sum-template directory - exception-transformers ghcjs-dom jsaddle keycode lens monad-control - mtl network-uri primitive random ref-tf reflex semialign semigroups - stm template-haskell text these transformers unix zenc - ]; - testHaskellDepends = [ - aeson async base bytestring chrome-test-utils constraints - constraints-extras containers dependent-map dependent-sum - dependent-sum-template directory exceptions filepath ghcjs-dom - hlint hspec hspec-core hspec-webdriver http-types HUnit jsaddle - jsaddle-warp lens lifted-base network process random ref-tf reflex - silently temporary text wai wai-websockets warp webdriver - websockets which - ]; - description = "Functional Reactive Web Apps with Reflex"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {chrome-test-utils = null;}; - - "reflex-dom-core_0_7_0_2" = callPackage - ({ mkDerivation, aeson, async, base, bifunctors, bimap - , blaze-builder, bytestring, case-insensitive, chrome-test-utils , commutative-semigroups, constraints, constraints-extras , containers, contravariant, data-default, dependent-map , dependent-sum, dependent-sum-template, directory @@ -240016,25 +238676,6 @@ self: { }) {}; "reflex-dom-pandoc" = callPackage - ({ mkDerivation, aeson, base, binary, bytestring, clay, constraints - , containers, data-default, lens, lens-aeson, modern-uri, mtl - , pandoc-types, ref-tf, reflex, reflex-dom-core, safe, skylighting - , text, time - }: - mkDerivation { - pname = "reflex-dom-pandoc"; - version = "0.6.0.0"; - sha256 = "0dnsvv883jpkflh0319lr52v69ki3vywnrm28zd6m7r8k336mc18"; - libraryHaskellDepends = [ - aeson base binary bytestring clay constraints containers - data-default lens lens-aeson modern-uri mtl pandoc-types ref-tf - reflex reflex-dom-core safe skylighting text time - ]; - description = "Render Pandoc documents to HTML using reflex-dom"; - license = lib.licenses.bsd3; - }) {}; - - "reflex-dom-pandoc_1_0_0_0" = callPackage ({ mkDerivation, aeson, base, binary, bytestring, constraints , containers, data-default, lens, lens-aeson, mtl, pandoc-types , ref-tf, reflex, reflex-dom-core, safe, skylighting, text, time @@ -240050,7 +238691,6 @@ self: { ]; description = "Render Pandoc documents to HTML using reflex-dom"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "reflex-dom-retractable" = callPackage @@ -240171,8 +238811,8 @@ self: { }: mkDerivation { pname = "reflex-gadt-api"; - version = "0.2.2.0"; - sha256 = "1ras7jl1j90a4zd9bnw4x31ykk0ww373kjpkd9sq909i73a7xzxl"; + version = "0.2.2.1"; + sha256 = "042dad8gilpzn1ng4ck5mmca9q257vi9317xxr0in0sp30sn1g11"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240187,7 +238827,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "readme"; - broken = true; }) {}; "reflex-ghci" = callPackage @@ -240198,8 +238837,8 @@ self: { }: mkDerivation { pname = "reflex-ghci"; - version = "0.1.5.2"; - sha256 = "18w9n6sm9b0ykjxqa800228b7s3y6gg8ckl6jnms3860p0cskpqq"; + version = "0.1.5.4"; + sha256 = "0qp50yscpik3hb2dhga4x9w40vji34hklvcjksnd1a1d512jh485"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240327,6 +238966,8 @@ self: { description = "Reflex bindings for libtelnet"; license = lib.licenses.gpl3Plus; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reflex-localize" = callPackage @@ -240405,8 +239046,8 @@ self: { }: mkDerivation { pname = "reflex-process"; - version = "0.3.1.1"; - sha256 = "15f9qn5rx6dwjnkhg5szhagxsj7vnh3bh4ad7j4jsi87m627mlj2"; + version = "0.3.1.2"; + sha256 = "0casszkah49b6n36ymh5ffyhbz1161z5vrlpwisn1r1wb68idm3j"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240494,8 +239135,8 @@ self: { }: mkDerivation { pname = "reflex-vty"; - version = "0.3.0.0"; - sha256 = "1c4v2i54i0a4dq8ywkxax33wz4wzyf4hw5vn2s5hy75m78hq8g6i"; + version = "0.3.1.0"; + sha256 = "1dkfrz580rqwir2y54im2ymjq7lgxjy888lq240jarhnr2yc32xi"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240666,8 +239307,8 @@ self: { }: mkDerivation { pname = "refurb"; - version = "0.2.3.0"; - sha256 = "09p9i0l59f34k12pbxvi50bxpj2d864n96fr79mq41xm0bhygsjb"; + version = "0.3.0.2"; + sha256 = "09yzk37f2sbmygva12splnxj3z6sy35mz9b6s7w82s1jbvy16zgr"; libraryHaskellDepends = [ ansi-wl-pprint base bytestring classy-prelude composite-base composite-opaleye dlist exceptions fast-logger lens monad-control @@ -240685,6 +239326,7 @@ self: { description = "Tools for maintaining a database"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reg-alloc" = callPackage @@ -240785,8 +239427,8 @@ self: { pname = "regex-applicative-text"; version = "0.1.0.1"; sha256 = "1ng2qhk4mvpzl8fx91ig7ldv09v9aqdsvn6yl9yjapc6h0ghb4xh"; - revision = "6"; - editedCabalFile = "16a2d8d84gzbjbvs7pc7sz5bi7rz2s5c57gkwi0vf5lmscgjy25h"; + revision = "7"; + editedCabalFile = "0v4k5hvqcabgiiycn4xayg9kahwifqg4nc0m1wkm3ixcywwg8i88"; libraryHaskellDepends = [ base regex-applicative text ]; description = "regex-applicative on text"; license = lib.licenses.bsd3; @@ -241120,9 +239762,7 @@ self: { testHaskellDepends = [ base bytestring tasty tasty-hunit ]; description = "Bindings to Rust's regex library"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; - broken = true; }) {inherit (pkgs) rure;}; "regex-tdfa" = callPackage @@ -241546,6 +240186,37 @@ self: { broken = true; }) {}; + "registry_0_6_0_0" = callPackage + ({ mkDerivation, async, base, bytestring, containers, directory + , exceptions, generic-lens, hashable, hedgehog, io-memoize, mmorph + , MonadRandom, mtl, multimap, protolude, random, resourcet + , semigroupoids, semigroups, tasty, tasty-discover, tasty-hedgehog + , tasty-th, template-haskell, text, transformers-base, universum + , unliftio + }: + mkDerivation { + pname = "registry"; + version = "0.6.0.0"; + sha256 = "1nspxg5aks9ayk6jzybddr0gb2cs9mbjllvrw8q2v7145bf54b72"; + libraryHaskellDepends = [ + base containers exceptions hashable mmorph mtl multimap protolude + resourcet semigroupoids semigroups template-haskell text + transformers-base unliftio + ]; + testHaskellDepends = [ + async base bytestring containers directory exceptions generic-lens + hashable hedgehog io-memoize mmorph MonadRandom mtl multimap + protolude random resourcet semigroupoids semigroups tasty + tasty-discover tasty-hedgehog tasty-th template-haskell text + transformers-base universum unliftio + ]; + testToolDepends = [ tasty-discover ]; + description = "data structure for assembling components"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "registry-aeson" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, hedgehog , protolude, registry, registry-hedgehog, tasty, template-haskell @@ -241569,6 +240240,30 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-aeson_0_3_0_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, hedgehog + , protolude, registry, registry-hedgehog, string-qq, tasty + , template-haskell, text, time, transformers, unordered-containers + , vector + }: + mkDerivation { + pname = "registry-aeson"; + version = "0.3.0.0"; + sha256 = "1248mszp2wcj9v2djnfliqqhkmsvixwh6j9qwcjj00wvdb7lmzad"; + libraryHaskellDepends = [ + aeson base bytestring containers protolude registry + template-haskell text transformers unordered-containers vector + ]; + testHaskellDepends = [ + aeson base bytestring containers hedgehog protolude registry + registry-hedgehog string-qq tasty template-haskell text time + transformers unordered-containers vector + ]; + description = "Aeson encoders / decoders"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "registry-hedgehog" = callPackage ({ mkDerivation, base, containers, hedgehog, mmorph, multimap , protolude, registry, tasty, tasty-discover, tasty-hedgehog @@ -241595,6 +240290,32 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-hedgehog_0_8_0_0" = callPackage + ({ mkDerivation, base, containers, hedgehog, mmorph, multimap + , protolude, registry, tasty, tasty-discover, tasty-hedgehog + , tasty-th, template-haskell, text, transformers, universum + , unordered-containers + }: + mkDerivation { + pname = "registry-hedgehog"; + version = "0.8.0.0"; + sha256 = "1nf06yb4kn04b9cmfc7gs4h4b1p952if6x3wyb7ybbpjnhm2k2jw"; + libraryHaskellDepends = [ + base containers hedgehog mmorph multimap protolude registry tasty + tasty-discover tasty-hedgehog tasty-th template-haskell text + transformers universum unordered-containers + ]; + testHaskellDepends = [ + base containers hedgehog mmorph multimap protolude registry tasty + tasty-discover tasty-hedgehog tasty-th template-haskell text + transformers universum unordered-containers + ]; + testToolDepends = [ tasty-discover ]; + description = "utilities to work with Hedgehog generators and `registry`"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "registry-hedgehog-aeson" = callPackage ({ mkDerivation, aeson, base, containers, hedgehog, mmorph , multimap, protolude, registry, registry-hedgehog, scientific @@ -241623,6 +240344,34 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-hedgehog-aeson_0_3_0_0" = callPackage + ({ mkDerivation, aeson, base, containers, hedgehog, mmorph + , multimap, protolude, registry, registry-hedgehog, scientific + , tasty, tasty-discover, tasty-hedgehog, tasty-th, template-haskell + , text, transformers, universum, unordered-containers, vector + }: + mkDerivation { + pname = "registry-hedgehog-aeson"; + version = "0.3.0.0"; + sha256 = "08k8vdc4hmqnsci2bvacrizlfb98a2yp7h3p5ad8dqn2yhinlbrf"; + libraryHaskellDepends = [ + aeson base containers hedgehog mmorph multimap protolude registry + scientific tasty tasty-discover tasty-hedgehog tasty-th + template-haskell text transformers universum unordered-containers + vector + ]; + testHaskellDepends = [ + aeson base containers hedgehog mmorph multimap protolude registry + registry-hedgehog scientific tasty tasty-discover tasty-hedgehog + tasty-th template-haskell text transformers universum + unordered-containers vector + ]; + testToolDepends = [ tasty-discover ]; + description = "Hedgehog generators for Aeson"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "registry-messagepack" = callPackage ({ mkDerivation, base, containers, msgpack, protolude, registry , registry-hedgehog, tasty, template-haskell, text, time @@ -241630,8 +240379,8 @@ self: { }: mkDerivation { pname = "registry-messagepack"; - version = "0.3.1.0"; - sha256 = "0v1cwgcvs31vpwxpbrbbhfvql7ch99ifs47008wrcdvmahb9h9qz"; + version = "0.4.0.0"; + sha256 = "0xqjw7cav0asdbfar5b60vf785mqqjzaffs8pi7addjk2dyd10dx"; libraryHaskellDepends = [ base containers msgpack protolude registry template-haskell text transformers vector @@ -241670,6 +240419,31 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-options_0_2_0_0" = callPackage + ({ mkDerivation, base, boxes, bytestring, containers, directory + , hedgehog, HsYAML, multimap, protolude, registry + , registry-hedgehog, tasty, template-haskell, text, th-lift, time + , transformers, unordered-containers, vector + }: + mkDerivation { + pname = "registry-options"; + version = "0.2.0.0"; + sha256 = "1qwiabl7w25ji2pnx2wmh57q7w0bvsdi51ibczx90xn1y4y8j6wm"; + libraryHaskellDepends = [ + base boxes bytestring containers HsYAML multimap protolude registry + template-haskell text th-lift transformers unordered-containers + vector + ]; + testHaskellDepends = [ + base boxes bytestring containers directory hedgehog HsYAML multimap + protolude registry registry-hedgehog tasty template-haskell text + th-lift time transformers unordered-containers vector + ]; + description = "application options parsing"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "regress" = callPackage ({ mkDerivation, ad, base, vector }: mkDerivation { @@ -241861,33 +240635,6 @@ self: { }: mkDerivation { pname = "rel8"; - version = "1.3.1.0"; - sha256 = "0r1pbci7zl01v485bgbn90m07qrqdzkcpj4mykkdxxla9zlj2m39"; - libraryHaskellDepends = [ - aeson base bifunctors bytestring case-insensitive comonad - contravariant hasql opaleye pretty product-profunctors profunctors - scientific semialign semigroupoids text these time uuid - ]; - testHaskellDepends = [ - base bytestring case-insensitive containers hasql hasql-transaction - hedgehog mmorph scientific tasty tasty-hedgehog text time - tmp-postgres transformers uuid - ]; - description = "Hey! Hey! Can u rel8?"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.sternenseemann ]; - }) {}; - - "rel8_1_4_0_0" = callPackage - ({ mkDerivation, aeson, base, bifunctors, bytestring - , case-insensitive, comonad, containers, contravariant, hasql - , hasql-transaction, hedgehog, mmorph, opaleye, pretty - , product-profunctors, profunctors, scientific, semialign - , semigroupoids, tasty, tasty-hedgehog, text, these, time - , tmp-postgres, transformers, uuid - }: - mkDerivation { - pname = "rel8"; version = "1.4.0.0"; sha256 = "1i0ah0wqx0z7grm9zbvf6mx6gk7lx1xfa7svbp4dnb4k8p52b63k"; libraryHaskellDepends = [ @@ -241902,7 +240649,6 @@ self: { ]; description = "Hey! Hey! Can u rel8?"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -241935,8 +240681,6 @@ self: { ]; description = "Sensible RLP encoding"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "relation" = callPackage @@ -241957,6 +240701,8 @@ self: { testToolDepends = [ doctest-discover hspec-discover ]; description = "A data structure representing Relations on Sets"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "relational-postgresql8" = callPackage @@ -242263,27 +241009,6 @@ self: { }) {}; "relude" = callPackage - ({ mkDerivation, base, bytestring, containers, criterion, deepseq - , doctest, ghc-prim, Glob, hashable, hedgehog, mtl, stm, text - , transformers, unordered-containers - }: - mkDerivation { - pname = "relude"; - version = "1.0.0.1"; - sha256 = "0cw9a1gfvias4hr36ywdizhysnzbzxy20fb3jwmqmgjy40lzxp2g"; - libraryHaskellDepends = [ - base bytestring containers deepseq ghc-prim hashable mtl stm text - transformers unordered-containers - ]; - testHaskellDepends = [ - base bytestring containers doctest Glob hedgehog text - ]; - benchmarkHaskellDepends = [ base criterion unordered-containers ]; - description = "Safe, performant, user-friendly and lightweight Haskell Standard Library"; - license = lib.licenses.mit; - }) {}; - - "relude_1_1_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, doctest , ghc-prim, Glob, hashable, hedgehog, mtl, stm, tasty-bench, text , transformers, unordered-containers @@ -242304,7 +241029,6 @@ self: { ]; description = "Safe, performant, user-friendly and lightweight Haskell Standard Library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "remark" = callPackage @@ -243165,40 +241889,6 @@ self: { "req" = callPackage ({ mkDerivation, aeson, authenticate-oauth, base, blaze-builder - , bytestring, case-insensitive, connection, exceptions, hspec - , hspec-core, hspec-discover, http-api-data, http-client - , http-client-tls, http-types, modern-uri, monad-control, mtl - , QuickCheck, retry, template-haskell, text, time, transformers - , transformers-base, unliftio-core - }: - mkDerivation { - pname = "req"; - version = "3.10.0"; - sha256 = "176zl3ihmp8iz4fwfi5dalmiz658dis0hxni6bqzqgnaxhd0230w"; - revision = "2"; - editedCabalFile = "147q0jkfrg066lnl20gzv5rk6d9jdwyvaip2y4am5hkrvcg3v9z8"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson authenticate-oauth base blaze-builder bytestring - case-insensitive connection exceptions http-api-data http-client - http-client-tls http-types modern-uri monad-control mtl retry - template-haskell text time transformers transformers-base - unliftio-core - ]; - testHaskellDepends = [ - aeson base blaze-builder bytestring case-insensitive hspec - hspec-core http-client http-types modern-uri monad-control mtl - QuickCheck retry template-haskell text time - ]; - testToolDepends = [ hspec-discover ]; - doCheck = false; - description = "HTTP client library"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.maralorn ]; - }) {}; - - "req_3_13_0" = callPackage - ({ mkDerivation, aeson, authenticate-oauth, base, blaze-builder , bytestring, case-insensitive, connection, containers, exceptions , hspec, hspec-core, hspec-discover, http-api-data, http-client , http-client-tls, http-types, modern-uri, monad-control, mtl @@ -243228,7 +241918,6 @@ self: { doCheck = false; description = "HTTP client library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -243375,6 +242064,8 @@ self: { ]; description = "Scrap your qualified import clutter"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "requirements" = callPackage @@ -243418,23 +242109,11 @@ self: { ({ mkDerivation, rebase }: mkDerivation { pname = "rerebase"; - version = "1.15.0.3"; - sha256 = "0jxlssdxgh5ldgkdpmhpk8vy5fxmq95171b3jl57r9m2f7zqrcd2"; - libraryHaskellDepends = [ rebase ]; - description = "Reexports from \"base\" with a bunch of other standard libraries"; - license = lib.licenses.mit; - }) {}; - - "rerebase_1_16_1" = callPackage - ({ mkDerivation, rebase }: - mkDerivation { - pname = "rerebase"; version = "1.16.1"; sha256 = "04pw2j4nh8x53axmfzp9d2plmiwxpxddgwcji0a8j24lkdyv8k32"; libraryHaskellDepends = [ rebase ]; description = "Reexports from \"base\" with a bunch of other standard libraries"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "reroute" = callPackage @@ -243444,30 +242123,6 @@ self: { }: mkDerivation { pname = "reroute"; - version = "0.6.0.0"; - sha256 = "1jvh5ngpf1w4y9b1ipx1c65q8gmwsajp8k5ha0sjn89hbc8cp48y"; - libraryHaskellDepends = [ - base deepseq hashable http-api-data hvect mtl text - unordered-containers - ]; - testHaskellDepends = [ - base hspec hvect mtl text unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base criterion deepseq graph-core hashable http-api-data hvect mtl - random regex-compat text unordered-containers vector - ]; - description = "abstract implementation of typed and untyped web routing"; - license = lib.licenses.mit; - }) {}; - - "reroute_0_7_0_0" = callPackage - ({ mkDerivation, base, criterion, deepseq, graph-core, hashable - , hspec, http-api-data, hvect, mtl, random, regex-compat, text - , unordered-containers, vector - }: - mkDerivation { - pname = "reroute"; version = "0.7.0.0"; sha256 = "046pszxz2mp0glss03ifk1617i1w15cm5x0jy2iwg5a905vdis3s"; libraryHaskellDepends = [ @@ -243483,7 +242138,6 @@ self: { ]; description = "abstract implementation of typed and untyped web routing"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "rescue" = callPackage @@ -243515,6 +242169,8 @@ self: { ]; description = "More understandable exceptions"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reserve" = callPackage @@ -243541,7 +242197,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "reserve"; - broken = true; }) {}; "reservoir" = callPackage @@ -243580,6 +242235,7 @@ self: { executableHaskellDepends = [ base comfort-array lapack ]; description = "Compute total resistance of a cube of resistors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "resistor-cube"; }) {}; @@ -243740,7 +242396,6 @@ self: { ]; description = "Fork of resource-pool, with a MonadCatchIO constraint"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "resource-pool-fork-avanov" = callPackage @@ -244316,7 +242971,6 @@ self: { description = "RethinkDB driver for Haskell"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "retrie" = callPackage @@ -244350,7 +243004,7 @@ self: { license = lib.licenses.mit; }) {}; - "retrie_1_2_0_1" = callPackage + "retrie_1_2_1_1" = callPackage ({ mkDerivation, ansi-terminal, async, base, bytestring, containers , data-default, deepseq, directory, exceptions, filepath, ghc , ghc-exactprint, ghc-paths, haskell-src-exts, HUnit, list-t, mtl @@ -244359,10 +243013,8 @@ self: { }: mkDerivation { pname = "retrie"; - version = "1.2.0.1"; - sha256 = "1n3g9wr45xz1q2mhlj1r2709rqakczrvd7x6vxh7iapz43f69c6x"; - revision = "2"; - editedCabalFile = "0h6r4jg9mnqwvlsl3s6yl2zvhkwr8pdypbzvky4kwz4zvc03j5ql"; + version = "1.2.1.1"; + sha256 = "1axz2kdp6ljwiy8zvj33r6dbhgcglf0qlcq4s5f4bx4djsqwgavl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -244401,6 +243053,7 @@ self: { ]; description = "Code shared across the code samples in the book \"Retrocomputing with Clash\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "retroclash-sim" = callPackage @@ -244420,6 +243073,7 @@ self: { ]; description = "High-level simulators from the book \"Retrocomputing with Clash\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "retry" = callPackage @@ -244549,6 +243203,8 @@ self: { libraryHaskellDepends = [ base containers contiguous deepseq ]; description = "reversed lists/snoc lists"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reversi" = callPackage @@ -244927,7 +243583,9 @@ self: { ]; description = "Functional Reactive Programming with type-level clocks"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; + broken = true; }) {}; "rhine-gloss" = callPackage @@ -244942,6 +243600,7 @@ self: { executableHaskellDepends = [ base ]; description = "Gloss backend for Rhine"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "rhine-gloss-gears"; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -245063,7 +243722,6 @@ self: { description = "Static site generator based on Shake"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "rib-core" = callPackage @@ -245085,6 +243743,8 @@ self: { ]; description = "Static site generator based on Shake"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ribbit" = callPackage @@ -245508,8 +244168,8 @@ self: { }: mkDerivation { pname = "rio-prettyprint"; - version = "0.1.2.0"; - sha256 = "0xql9rjd0b8vyfllb9h8j7nxbrnrvz9kkclzlb3wln10l9pi5v03"; + version = "0.1.3.0"; + sha256 = "0zlr8wnh38i3dxxfva91q9cwcsvqx0alf9fscn4c4545qhzw7a02"; libraryHaskellDepends = [ aeson annotated-wl-pprint ansi-terminal array base Cabal colour mtl path rio text @@ -245518,6 +244178,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "rio-prettyprint_0_1_4_0" = callPackage + ({ mkDerivation, aeson, annotated-wl-pprint, ansi-terminal, array + , base, Cabal, colour, mtl, path, rio, text + }: + mkDerivation { + pname = "rio-prettyprint"; + version = "0.1.4.0"; + sha256 = "0dagrbs9ssqh5mcr9fcaiqhc8vyr3aqxwxxpcd4j0bqvfcjhkbkz"; + libraryHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array base Cabal colour mtl + path rio text + ]; + description = "Pretty-printing for RIO"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "rio-process-pool" = callPackage ({ mkDerivation, async, atomic-primops, base, containers, criterion , data-default, hashable, HUnit, mtl, QuickCheck, rio, tasty @@ -245549,7 +244226,6 @@ self: { ]; description = "A library for process pools coupled with asynchronous message queues"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; mainProgram = "rio-process-pool-memleak-test"; }) {}; @@ -245824,8 +244500,6 @@ self: { ]; description = "A data type of run-length-encoded lists"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "rlglue" = callPackage @@ -245998,22 +244672,32 @@ self: { }) {}; "roboservant" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, hedgehog, mtl - , servant, servant-client, servant-flatten, servant-server - , string-conversions + ({ mkDerivation, aeson, base, bytestring, containers, dependent-map + , dependent-sum, hashable, hspec, hspec-core, hspec-wai + , http-api-data, http-client, http-types, lifted-base + , markdown-unlit, monad-control, mtl, random, servant + , servant-client, servant-flatten, servant-server + , string-conversions, text, time, unordered-containers, vinyl, wai + , warp }: mkDerivation { pname = "roboservant"; - version = "0.1.0.2"; - sha256 = "1dbzwczmjms6phzf3r6igy1q33gkwsdirdabd2rr0i2qp0lynshv"; + version = "0.1.0.3"; + sha256 = "1qcxhmppvpbibzq6mmqzz891pmi9c6cjjvxjyn8vlhvydgklh6x4"; libraryHaskellDepends = [ - base bytestring containers hedgehog mtl servant servant-client - servant-flatten servant-server string-conversions + base bytestring containers dependent-map dependent-sum hashable + http-types lifted-base monad-control mtl random servant + servant-client servant-flatten servant-server string-conversions + text time unordered-containers vinyl ]; testHaskellDepends = [ - aeson base bytestring containers hedgehog mtl servant + aeson base bytestring containers dependent-map dependent-sum + hashable hspec hspec-core hspec-wai http-api-data http-client + http-types lifted-base monad-control mtl random servant servant-client servant-flatten servant-server string-conversions + text time unordered-containers vinyl wai warp ]; + testToolDepends = [ markdown-unlit ]; description = "Automatic session-aware servant testing"; license = lib.licenses.bsd3; }) {}; @@ -246105,6 +244789,8 @@ self: { ]; description = "Implementation of the ROC National ID standard"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "rock" = callPackage @@ -246209,7 +244895,9 @@ self: { ]; description = "Sci-fi roguelike game. Client application."; license = "unknown"; + hydraPlatforms = lib.platforms.none; mainProgram = "roguestar"; + broken = true; }) {}; "roguestar-engine" = callPackage @@ -246472,6 +245160,8 @@ self: { ]; description = "Parsing and pretty printing of Roman numerals"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "romkan" = callPackage @@ -246904,6 +245594,8 @@ self: { testHaskellDepends = [ base long-double ]; description = "Correctly-rounded arbitrary-precision floating-point arithmetic"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;}; "rounded-hw" = callPackage @@ -247603,6 +246295,8 @@ self: { ]; description = "Parsing and manipulation of rtorrent state file contents"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "rts-loader" = callPackage @@ -247906,6 +246600,7 @@ self: { description = "Look up class instances at runtime"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "rustls" = callPackage @@ -248029,8 +246724,8 @@ self: { }: mkDerivation { pname = "s-cargot"; - version = "0.1.4.0"; - sha256 = "0bay3ids11acs0b95gn99s6m93x3d8hl45yf008lv4wcxwaq77sd"; + version = "0.1.5.0"; + sha256 = "06y2hrf6ncnf37w3g1gphfcqxsbln62jkpww8x5r0qq6f2cgj2z1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers parsec text ]; @@ -248049,6 +246744,8 @@ self: { testHaskellDepends = [ base HUnit parsec s-cargot text ]; description = "Enables let-binding and let-expansion for s-cargot defined S-expressions"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "s-expression" = callPackage @@ -248147,21 +246844,6 @@ self: { }: mkDerivation { pname = "safe-coloured-text"; - version = "0.1.0.0"; - sha256 = "1fcqwllpbp9x1r1bvyry6bmp2s9rp8rlr3i94hdiydc71hpl7a0w"; - libraryHaskellDepends = [ - base bytestring text validity validity-bytestring validity-text - ]; - description = "Safely output coloured text"; - license = lib.licenses.mit; - }) {}; - - "safe-coloured-text_0_2_0_1" = callPackage - ({ mkDerivation, base, bytestring, text, validity - , validity-bytestring, validity-text - }: - mkDerivation { - pname = "safe-coloured-text"; version = "0.2.0.1"; sha256 = "0n8pkdy7v1c3c14fpbwkrib5vmmviqv9ysl7bcm6g3p23qi4lq5i"; libraryHaskellDepends = [ @@ -248169,7 +246851,6 @@ self: { ]; description = "Safely output coloured text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "safe-coloured-text-gen" = callPackage @@ -248236,23 +246917,11 @@ self: { ({ mkDerivation, base, safe-coloured-text, terminfo }: mkDerivation { pname = "safe-coloured-text-terminfo"; - version = "0.0.0.0"; - sha256 = "0f94zzmanmxplkcg1s954rq00ppv69icyjpzr5s0g6c14zp1k85b"; - libraryHaskellDepends = [ base safe-coloured-text terminfo ]; - description = "Safely output coloured text"; - license = lib.licenses.mit; - }) {}; - - "safe-coloured-text-terminfo_0_1_0_0" = callPackage - ({ mkDerivation, base, safe-coloured-text, terminfo }: - mkDerivation { - pname = "safe-coloured-text-terminfo"; version = "0.1.0.0"; sha256 = "1qfs1y35sxabnlihfzbs5nhmhz5xb7fwiib4j2nhwwq70glyldcn"; libraryHaskellDepends = [ base safe-coloured-text terminfo ]; description = "Safely output coloured text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "safe-coupling" = callPackage @@ -248389,9 +247058,9 @@ self: { "safe-json" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, dlist - , generic-arbitrary, hashable, quickcheck-instances, scientific - , tasty, tasty-hunit, tasty-quickcheck, temporary, text, time - , unordered-containers, uuid, uuid-types, vector + , hashable, quickcheck-instances, scientific, tasty, tasty-hunit + , tasty-quickcheck, temporary, text, time, unordered-containers + , uuid, uuid-types, vector }: mkDerivation { pname = "safe-json"; @@ -248405,7 +247074,7 @@ self: { uuid-types vector ]; testHaskellDepends = [ - aeson base bytestring containers dlist generic-arbitrary hashable + aeson base bytestring containers dlist hashable quickcheck-instances scientific tasty tasty-hunit tasty-quickcheck temporary text time unordered-containers uuid uuid-types vector ]; @@ -248552,6 +247221,8 @@ self: { ]; description = "Instances from the xmlbf library for the safe-money library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "safe-numeric" = callPackage @@ -248630,6 +247301,8 @@ self: { testHaskellDepends = [ base ]; description = "Use RecordWildCards safely"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "safecopy" = callPackage @@ -248740,6 +247413,8 @@ self: { ]; description = "Write output to disk atomically"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "safepath" = callPackage @@ -248932,6 +247607,8 @@ self: { ]; description = "Configuration (re)Loader and Parser"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "salak-toml" = callPackage @@ -248955,7 +247632,6 @@ self: { description = "Configuration Loader for toml"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "salak-yaml" = callPackage @@ -248977,28 +247653,10 @@ self: { ]; description = "Configuration Loader for yaml"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "saltine" = callPackage - ({ mkDerivation, base, bytestring, hashable, libsodium, profunctors - , QuickCheck, semigroups, test-framework - , test-framework-quickcheck2 - }: - mkDerivation { - pname = "saltine"; - version = "0.1.1.1"; - sha256 = "1bgr6vrmw18qr8akabxz6w3hwhlqi6zsnr23n70hkvwvcap1lnx7"; - libraryHaskellDepends = [ base bytestring hashable profunctors ]; - libraryPkgconfigDepends = [ libsodium ]; - testHaskellDepends = [ - base bytestring QuickCheck semigroups test-framework - test-framework-quickcheck2 - ]; - description = "Cryptography that's easy to digest (NaCl/libsodium bindings)"; - license = lib.licenses.mit; - }) {inherit (pkgs) libsodium;}; - - "saltine_0_2_0_1" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, hashable , libsodium, profunctors, QuickCheck, semigroups, test-framework , test-framework-quickcheck2, text @@ -249021,7 +247679,6 @@ self: { benchmarkSystemDepends = [ libsodium ]; description = "Cryptography that's easy to digest (NaCl/libsodium bindings)"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) libsodium;}; "saltine-quickcheck" = callPackage @@ -249350,8 +248007,8 @@ self: { }: mkDerivation { pname = "sandwich"; - version = "0.1.1.2"; - sha256 = "1flac21bgxq07xq5ax9ga7xm1bg2bwld88msbginqxycx21dvcdq"; + version = "0.1.2.0"; + sha256 = "0g1qyhp0w8gxyv60phm1apvq1p7cx7z6f9ijjx67gh7pk9mmlbzw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -249465,8 +248122,8 @@ self: { }: mkDerivation { pname = "sandwich-webdriver"; - version = "0.1.1.0"; - sha256 = "01y8jy2fvph9kmh42zwnf8y9rca82arn2a6wgh3mzylfijni74lj"; + version = "0.1.2.0"; + sha256 = "146pck1kj5p8h6x8bv6iriicrjxsi0jbpirmscjhc4gg8nd0fmxm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -249495,7 +248152,6 @@ self: { ]; description = "Sandwich integration with Selenium WebDriver"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sandwich-webdriver-exe"; }) {}; @@ -249817,33 +248473,6 @@ self: { }: mkDerivation { pname = "sbp"; - version = "4.1.6"; - sha256 = "0ph1bn95bxpmfs2xvbgj7kpz3ji6jf65ykah5srmhqgbw21d1wl7"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson array base base64-bytestring basic-prelude binary bytestring - data-binary-ieee754 lens lens-aeson monad-loops template-haskell - text - ]; - executableHaskellDepends = [ - aeson aeson-pretty base basic-prelude binary-conduit bytestring - cmdargs conduit conduit-extra lens resourcet time yaml - ]; - testHaskellDepends = [ base basic-prelude tasty tasty-hunit ]; - description = "SwiftNav's SBP Library"; - license = lib.licenses.mit; - }) {}; - - "sbp_4_9_0" = callPackage - ({ mkDerivation, aeson, aeson-pretty, array, base - , base64-bytestring, basic-prelude, binary, binary-conduit - , bytestring, cmdargs, conduit, conduit-extra, data-binary-ieee754 - , lens, lens-aeson, monad-loops, resourcet, tasty, tasty-hunit - , template-haskell, text, time, yaml - }: - mkDerivation { - pname = "sbp"; version = "4.9.0"; sha256 = "14p0a23kmn9z9l8rm9q94zgyx5p0wnjrgf51shk2magjg055llkb"; isLibrary = true; @@ -249860,7 +248489,6 @@ self: { testHaskellDepends = [ base basic-prelude tasty tasty-hunit ]; description = "SwiftNav's SBP Library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "sbp2udp" = callPackage @@ -249910,42 +248538,10 @@ self: { description = "SMT Based Verification: Symbolic Haskell theorem prover using SMT solving"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) z3;}; "sbv" = callPackage - ({ mkDerivation, array, async, base, bench-show, bytestring - , containers, deepseq, directory, doctest, filepath, gauge, Glob - , hlint, libBF, mtl, pretty, process, QuickCheck, random, silently - , syb, tasty, tasty-golden, tasty-hunit, tasty-quickcheck - , template-haskell, text, time, transformers, uniplate, z3 - }: - mkDerivation { - pname = "sbv"; - version = "8.17"; - sha256 = "0l9dwydrjipgq3cbv0g6y820mi7lf5lcn3hidl6a60zzdrkfyxhd"; - revision = "1"; - editedCabalFile = "18jjnxxq9bh5raxw3khgkx14wq4fv1kfd59lhh9v55z59sjaydiy"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - array async base containers deepseq directory filepath libBF mtl - pretty process QuickCheck random syb template-haskell text time - transformers uniplate - ]; - testHaskellDepends = [ - base bytestring containers directory doctest filepath Glob hlint - mtl QuickCheck random tasty tasty-golden tasty-hunit - tasty-quickcheck - ]; - testSystemDepends = [ z3 ]; - benchmarkHaskellDepends = [ - base bench-show containers deepseq directory filepath gauge mtl - process random silently syb text time - ]; - description = "SMT Based Verification: Symbolic Haskell theorem prover using SMT solving"; - license = lib.licenses.bsd3; - }) {inherit (pkgs) z3;}; - - "sbv_9_0" = callPackage ({ mkDerivation, array, async, base, bytestring, containers , deepseq, directory, filepath, hlint, libBF, mtl, pretty, process , QuickCheck, random, syb, tasty, tasty-bench, tasty-golden @@ -249973,6 +248569,7 @@ self: { description = "SMT Based Verification: Symbolic Haskell theorem prover using SMT solving"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) z3;}; "sbvPlugin" = callPackage @@ -249993,7 +248590,6 @@ self: { description = "Formally prove properties of Haskell programs using SBV/SMT"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "sc2-lowlevel" = callPackage @@ -250242,8 +248838,8 @@ self: { }: mkDerivation { pname = "scalpel-search"; - version = "0.1.0.0"; - sha256 = "0qq8q9z3s37wcc6iwygn2hfh72k5kak93vmsvl3wn0k04lrivg60"; + version = "0.1.0.1"; + sha256 = "166pillw3pkvdi3qrcdvb6rd442ddfvb3dh7nxhkv012j6163flz"; libraryHaskellDepends = [ base scalpel-core tagsoup text uri ]; testHaskellDepends = [ base hspec scalpel scalpel-core tagsoup text uri @@ -250432,7 +249028,6 @@ self: { description = "A Haskell library for writing SCGI programs"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "schedevr" = callPackage @@ -250451,6 +249046,7 @@ self: { description = "Marge schedules and show EVR"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "schedule" = callPackage @@ -250472,8 +249068,6 @@ self: { ]; description = "Pure deterministic scheduled computations"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "schedule-planner" = callPackage @@ -251050,21 +249644,19 @@ self: { "scotty" = callPackage ({ mkDerivation, aeson, async, base, base-compat-batteries , blaze-builder, bytestring, case-insensitive, data-default-class - , directory, exceptions, fail, hspec, hspec-discover, hspec-wai - , http-types, lifted-base, lucid, monad-control, mtl, nats, network + , directory, exceptions, hspec, hspec-discover, hspec-wai + , http-types, lifted-base, lucid, monad-control, mtl, network , regex-compat, text, transformers, transformers-base , transformers-compat, wai, wai-extra, warp, weigh }: mkDerivation { pname = "scotty"; - version = "0.12"; - sha256 = "1lpggpdzgjk23mq7aa64yylds5dbm4ynhcvbarqihjxabvh7xmz1"; - revision = "9"; - editedCabalFile = "0d61dgx6wq682mz8ryq2a10v1z4yi0dik8b5psi0ragl2qip191j"; + version = "0.12.1"; + sha256 = "0jnv2k37yv7hbm21w356ml4b14avlwh8yyzwwwfrwpbn6zzk6ahy"; libraryHaskellDepends = [ aeson base base-compat-batteries blaze-builder bytestring - case-insensitive data-default-class exceptions fail http-types - monad-control mtl nats network regex-compat text transformers + case-insensitive data-default-class exceptions http-types + monad-control mtl network regex-compat text transformers transformers-base transformers-compat wai wai-extra warp ]; testHaskellDepends = [ @@ -251215,6 +249807,7 @@ self: { libraryHaskellDepends = [ base haxl scotty text ]; description = "Combine scotty and haxl"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "scotty-params-parser" = callPackage @@ -251586,6 +250179,8 @@ self: { testHaskellDepends = [ base hspec ]; description = "This package provides functions for relocate an item within a list"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "scrypt" = callPackage @@ -251636,13 +250231,15 @@ self: { }) {}; "scubature" = callPackage - ({ mkDerivation, array, base, containers, ilist, matrix, vector }: + ({ mkDerivation, array, base, containers, hspray, ilist, matrix + , numeric-prelude, vector + }: mkDerivation { pname = "scubature"; - version = "1.0.0.0"; - sha256 = "1wp17l4k7yh7b3r3x2piinki4p03lp6bsbpqryah1zwy3hrpv06c"; + version = "1.1.0.0"; + sha256 = "1rzq2lr09705ydhvjvag9phmpvjr55crh4hjdhl3lgd9c58dmxja"; libraryHaskellDepends = [ - array base containers ilist matrix vector + array base containers hspray ilist matrix numeric-prelude vector ]; description = "Multidimensional integration over simplices"; license = lib.licenses.gpl3Only; @@ -251764,27 +250361,6 @@ self: { }: mkDerivation { pname = "sdl2"; - version = "2.5.3.0"; - sha256 = "08l24cb92spnx3bn26bj0z2cszpsawhaa9vvhblvsr3d6z76065q"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base bytestring exceptions linear StateVar text transformers vector - ]; - librarySystemDepends = [ SDL2 ]; - libraryPkgconfigDepends = [ SDL2 ]; - testHaskellDepends = [ base deepseq linear vector weigh ]; - description = "Both high- and low-level bindings to the SDL library (version 2.0.6+)."; - license = lib.licenses.bsd3; - }) {inherit (pkgs) SDL2;}; - - "sdl2_2_5_4_0" = callPackage - ({ mkDerivation, base, bytestring, deepseq, exceptions, linear - , SDL2, StateVar, text, transformers, vector, weigh - }: - mkDerivation { - pname = "sdl2"; version = "2.5.4.0"; sha256 = "1g35phifz49kxk48s8jmgglxhxl79cbzc1cg2qlgk0vdpxpin8ym"; revision = "1"; @@ -251800,7 +250376,6 @@ self: { testHaskellDepends = [ base deepseq linear vector weigh ]; description = "Both high- and low-level bindings to the SDL library (version 2.0.6+)."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) SDL2;}; "sdl2-cairo" = callPackage @@ -252005,6 +250580,8 @@ self: { libraryToolDepends = [ cpphs ]; description = "Simple Data Processing"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sdp-binary" = callPackage @@ -252016,6 +250593,7 @@ self: { libraryHaskellDepends = [ base binary sdp ]; description = "Binary instances for SDP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-deepseq" = callPackage @@ -252027,6 +250605,7 @@ self: { libraryHaskellDepends = [ base deepseq sdp ]; description = "DeepSeq SDP extension"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-hashable" = callPackage @@ -252038,6 +250617,7 @@ self: { libraryHaskellDepends = [ base hashable sdp ]; description = "Hashable instances for SDP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-io" = callPackage @@ -252049,6 +250629,7 @@ self: { libraryHaskellDepends = [ base fmr sdp ]; description = "SDP IO extension"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-quickcheck" = callPackage @@ -252068,6 +250649,7 @@ self: { ]; description = "SDP QuickCheck support"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4bytestring" = callPackage @@ -252088,6 +250670,7 @@ self: { ]; description = "SDP wrapper for ByteString"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4text" = callPackage @@ -252106,6 +250689,7 @@ self: { ]; description = "SDP wrapper for Text"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4unordered" = callPackage @@ -252119,6 +250703,7 @@ self: { ]; description = "SDP classes for unordered containers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4vector" = callPackage @@ -252137,6 +250722,7 @@ self: { ]; description = "SDP wrapper for Vector"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdr" = callPackage @@ -252270,8 +250856,6 @@ self: { testHaskellDepends = [ base directory doctest filepath ]; description = "Infinite search in finite time with Hilbert's epsilon"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "search-algorithms" = callPackage @@ -252531,7 +251115,9 @@ self: { testToolDepends = [ tasty-discover ]; description = "Securely allocated and deallocated memory"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; mainProgram = "checkpw"; + broken = true; }) {}; "secure-sockets" = callPackage @@ -252639,8 +251225,6 @@ self: { libraryHaskellDepends = [ aeson base bytestring selda text ]; description = "JSON support for the Selda database library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "selda-postgresql" = callPackage @@ -252658,6 +251242,7 @@ self: { description = "PostgreSQL backend for the Selda database EDSL"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "selda-sqlite" = callPackage @@ -253038,25 +251623,11 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "semigroups"; - version = "0.19.2"; - sha256 = "0h1sl3i6k8csy5zkkpy65rxzds9wg577z83aaakybr3n1gcv4855"; - revision = "2"; - editedCabalFile = "0pprwlsipdsshr2h83bk0xjkhq2bw88m9fn44fiyas3habg25ajf"; - libraryHaskellDepends = [ base ]; - description = "Anything that associates"; - license = lib.licenses.bsd3; - }) {}; - - "semigroups_0_20" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "semigroups"; version = "0.20"; sha256 = "1qbk6scp1rzb69dy8mz26p6az5vi16g2lzwmwnfshh3br4rjwbch"; libraryHaskellDepends = [ base ]; description = "Anything that associates"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "semigroups-actions" = callPackage @@ -253088,6 +251659,8 @@ self: { ]; description = "Semilattices"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "semiring" = callPackage @@ -253442,6 +252015,7 @@ self: { description = "SmartyPants for Korean language"; license = lib.licenses.lgpl21Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "separated" = callPackage @@ -253674,6 +252248,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "Sequential numbers that allow arbitrarily inserting numbers - for containers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sequor" = callPackage @@ -253826,8 +252402,6 @@ self: { testHaskellDepends = [ base bytestring HUnit ]; description = "Cross platform serial port library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "serokell-util" = callPackage @@ -254853,6 +253427,7 @@ self: { description = "Servant support for Server-Sent events"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-examples" = callPackage @@ -255073,7 +253648,6 @@ self: { description = "automatical derivation of querying functions for servant webservices"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "servant-hmac-auth" = callPackage @@ -255178,6 +253752,7 @@ self: { description = "Generate HTTP2 clients from Servant API descriptions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-iCalendar" = callPackage @@ -255194,6 +253769,8 @@ self: { ]; description = "Servant support for iCalendar"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-jquery" = callPackage @@ -255213,6 +253790,7 @@ self: { description = "Automatically derive (jquery) javascript functions to query servant webservices"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-js" = callPackage @@ -255238,7 +253816,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Automatically derive javascript functions to query servant webservices"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "servant-jsonrpc" = callPackage @@ -255715,8 +254292,6 @@ self: { ]; description = "Utilities for using servant in a polysemy stack"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "servant-pool" = callPackage @@ -256386,7 +254961,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "servant-streamly-example"; - broken = true; }) {}; "servant-subscriber" = callPackage @@ -256469,8 +255043,8 @@ self: { pname = "servant-swagger-ui"; version = "0.3.5.4.5.0"; sha256 = "12w75z23bnygyr3ki9w3zfy9nhxyjawf9pyzhfg6rp2mq3nji9gg"; - revision = "2"; - editedCabalFile = "05g4gnvr8ljg5mszan5cr9zzi40p6d8sr7343mm2yc3ps45vy9g1"; + revision = "3"; + editedCabalFile = "0qspb55lvavfsyqjjjyyax9gqzp8yq9r13nvzj3qnsipjgw2irln"; libraryHaskellDepends = [ aeson base bytestring file-embed-lzma servant servant-server servant-swagger-ui-core text @@ -256488,8 +255062,8 @@ self: { pname = "servant-swagger-ui-core"; version = "0.3.5"; sha256 = "0ckvrwrb3x39hfl2hixcj3fhibh0vqsh6y7n1lsm25yvzfrg02zd"; - revision = "4"; - editedCabalFile = "16183mrmxipa3l3ffpibsrr41mbi2iikw66y80hplmnl6jjhnyzd"; + revision = "5"; + editedCabalFile = "1v80wydj605b1la1pa5b4l6c3ba86x2dlpnravvhmx32mkkxk7v2"; libraryHaskellDepends = [ aeson base blaze-markup bytestring http-media servant servant-blaze servant-server text transformers transformers-compat wai-app-static @@ -256582,6 +255156,25 @@ self: { transformers ]; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "servant-typed-error" = callPackage + ({ mkDerivation, aeson, base, mtl, servant, servant-client + , servant-server, sop-core + }: + mkDerivation { + pname = "servant-typed-error"; + version = "0.1.2.0"; + sha256 = "0bzn0ilq94bghm96dq08hyfcjkf72hg49527ix1sy52d0bym3xmm"; + libraryHaskellDepends = [ + aeson base mtl servant servant-client servant-server sop-core + ]; + description = "Typed error wrapper for Servant"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-typescript" = callPackage @@ -256659,9 +255252,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Servant servers utilities"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "servant-util-examples"; - broken = true; }) {}; "servant-util-beam-pg" = callPackage @@ -256692,7 +255283,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Implementation of servant-util primitives for beam-postgres"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "servant-util-beam-pg-examples"; }) {}; @@ -256793,6 +255383,25 @@ self: { ]; description = "Servant support for the XML Content-Type"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "servant-xml_1_0_2" = callPackage + ({ mkDerivation, base, bytestring, http-media, servant, xmlbf + , xmlbf-xeno + }: + mkDerivation { + pname = "servant-xml"; + version = "1.0.2"; + sha256 = "07ancw5dypcxqc48g9zn8vn597hj174aq5akzyr650pwz0dvwsfk"; + libraryHaskellDepends = [ + base bytestring http-media servant xmlbf xmlbf-xeno + ]; + description = "Servant support for the XML Content-Type"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-xstatic" = callPackage @@ -257002,6 +255611,8 @@ self: { ]; description = "Storage backend for serversession using acid-state"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "serversession-backend-persistent" = callPackage @@ -257137,6 +255748,8 @@ self: { ]; description = "JSON to Sql"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servius" = callPackage @@ -257674,6 +256287,8 @@ self: { librarySystemDepends = [ libsndfile openal ]; description = "minimal bindings to the audio module of sfml"; license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) libsndfile; inherit (pkgs) openal;}; "sfmt" = callPackage @@ -257934,7 +256549,6 @@ self: { description = "Functional GPU programming - DSEL & compiler"; license = "unknown"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "shady-graphics" = callPackage @@ -258004,22 +256618,21 @@ self: { ]; description = "Utilities for building ATS projects with shake"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "shake-bench" = callPackage - ({ mkDerivation, aeson, base, Chart, Chart-diagrams + ({ mkDerivation, aeson, base, bytestring, Chart, Chart-diagrams , diagrams-contrib, diagrams-core, diagrams-lib, diagrams-svg , directory, extra, filepath, lens, lens-aeson, mtl, shake, text }: mkDerivation { pname = "shake-bench"; - version = "0.1.1.0"; - sha256 = "1p2xa2kxfvzy2c188i9czr5w4jck4sxw2jb7s9dc1b5xf1a4bi01"; + version = "0.2.0.0"; + sha256 = "0jyx1pwj4wh80026ndxz7dapp7hw1v21z9bpd1073g73h7l5kw91"; libraryHaskellDepends = [ - aeson base Chart Chart-diagrams diagrams-contrib diagrams-core - diagrams-lib diagrams-svg directory extra filepath lens lens-aeson - mtl shake text + aeson base bytestring Chart Chart-diagrams diagrams-contrib + diagrams-core diagrams-lib diagrams-svg directory extra filepath + lens lens-aeson mtl shake text ]; description = "Build rules for historical benchmarking"; license = lib.licenses.asl20; @@ -258069,8 +256682,6 @@ self: { ]; description = "Shake library for use with cabal"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "shake-cabal-build" = callPackage @@ -258253,7 +256864,6 @@ self: { description = "Shake File Pack Rule"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "shake-path" = callPackage @@ -258610,9 +257220,7 @@ self: { ]; description = "physics engine and other tools for 2D shapes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "shapes-bench"; - broken = true; }) {}; "shapes-demo" = callPackage @@ -258632,7 +257240,6 @@ self: { ]; description = "demos for the 'shapes' package"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "shapes-demo"; }) {}; @@ -259333,6 +257940,8 @@ self: { ]; description = "Additional ShortByteString API"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "shortcircuit" = callPackage @@ -259496,10 +258105,8 @@ self: { }: mkDerivation { pname = "shower"; - version = "0.2.0.2"; - sha256 = "0flad49vvqww2pbf6j8557szffd7wb3z375avhvzwqyklimwipgn"; - revision = "1"; - editedCabalFile = "0d5vfb65lq6f36lagsf89dj45gs68dyv6cc6lqxz0c23bv91qarc"; + version = "0.2.0.3"; + sha256 = "0bxg88jbg5pj1nm48c1s04dl7l5psq35jsw60y3v1xpnszx95r1r"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base megaparsec pretty ]; @@ -259935,9 +258542,7 @@ self: { ]; description = "Calculate expressions involving significant figures"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "significant-figures-cli"; - broken = true; }) {}; "signify-hs" = callPackage @@ -259961,6 +258566,7 @@ self: { ]; description = "A Haskell clone of OpenBSD signify"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "signify-hs"; }) {}; @@ -260228,8 +258834,8 @@ self: { ({ mkDerivation, base, bytestring, Cabal, directory, filepath }: mkDerivation { pname = "simple-cabal"; - version = "0.1.3"; - sha256 = "035h20sz2hg2xc1k5ds1q367fa10px936dlhj3yxkydp3wprqr7x"; + version = "0.1.3.1"; + sha256 = "08cg8c8zw1gxz1m75695c5x5g3wxa47rnqrn5ws23da9krzy4762"; libraryHaskellDepends = [ base bytestring Cabal directory filepath ]; @@ -260369,8 +258975,6 @@ self: { benchmarkHaskellDepends = [ base criterion mtl transformers ]; description = "A simple effect system that integrates with MTL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "simple-enumeration" = callPackage @@ -260564,6 +259168,7 @@ self: { description = "Logging effect to plug into the simple-effects framework"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "simple-ltl" = callPackage @@ -260686,8 +259291,8 @@ self: { }: mkDerivation { pname = "simple-parser"; - version = "0.12.0"; - sha256 = "1g8ik221kfzjb3bndxghk42ki7hhs4xbwxq8arc66hsnynjxi7rs"; + version = "0.12.1"; + sha256 = "0izlhj9jilwj7zilav8ygnz5k6zbz65q2s1yyjsx62b9mfl9skqs"; libraryHaskellDepends = [ base bytestring containers errata exceptions mmorph mtl nonempty-containers scientific text text-builder @@ -261440,6 +260045,8 @@ self: { testHaskellDepends = [ base ]; description = "Like singletons, but much smaller"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "singleton-bool" = callPackage @@ -261479,6 +260086,7 @@ self: { libraryHaskellDepends = [ base singletons singletons-base ]; description = "Unary natural numbers relying on the singletons infrastructure"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "singleton-typelits" = callPackage @@ -261498,12 +260106,27 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "singletons"; + version = "3.0.1"; + sha256 = "0lqg9wxh02z2sikpy88asm8g4sfrvyb66b7p76irsij31h0cxbnk"; + revision = "1"; + editedCabalFile = "0n3jr9jqz50ygaw80a9cx3g09w7w8bdlq9ssyap0a4990yxl8fbx"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + description = "Basic singleton types and definitions"; + license = lib.licenses.bsd3; + }) {}; + + "singletons_3_0_2" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "singletons"; version = "3.0.2"; sha256 = "10jy9phwx3gnl5dx6by7chsln1x3lizz2igi4m1qlhznkq9fws7m"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; description = "Basic singleton types and definitions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "singletons-base" = callPackage @@ -261513,8 +260136,10 @@ self: { }: mkDerivation { pname = "singletons-base"; - version = "3.0"; - sha256 = "0syrh4f9rs4g643c90md1vqrpr6p8h8g8sh4x3j2dld12yvrw4wn"; + version = "3.1"; + sha256 = "1bsfbdbfwiq2nis3r95x06r0q9iypyz4hkvmgvk56bwj6421k7kd"; + revision = "1"; + editedCabalFile = "12p0xzmrkn2bjz6wf9i291bh47s9c0ziz6cvvja65vnzwd8l60ry"; setupHaskellDepends = [ base Cabal directory filepath ]; libraryHaskellDepends = [ base pretty singletons singletons-th template-haskell text @@ -261526,6 +260151,8 @@ self: { ]; description = "A promoted and singled version of the base library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "singletons-base_3_1_1" = callPackage @@ -261549,6 +260176,7 @@ self: { description = "A promoted and singled version of the base library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "singletons-presburger" = callPackage @@ -261567,6 +260195,26 @@ self: { ]; description = "Presburger Arithmetic Solver for GHC Type-level natural numbers with Singletons package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "singletons-presburger_0_7_1_0" = callPackage + ({ mkDerivation, base, ghc, ghc-typelits-presburger, mtl + , reflection, singletons, singletons-base + }: + mkDerivation { + pname = "singletons-presburger"; + version = "0.7.1.0"; + sha256 = "1qzjbbscykcvbbl8ifkr6nvm5fnqqzr8ddgq1blcm811lmi0g926"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base ghc ghc-typelits-presburger mtl reflection singletons + singletons-base + ]; + description = "Presburger Arithmetic Solver for GHC Type-level natural numbers with Singletons package"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "singletons-th" = callPackage @@ -261575,10 +260223,10 @@ self: { }: mkDerivation { pname = "singletons-th"; - version = "3.0"; - sha256 = "1c0w7sg0lbpizrzns4g55wxsk5jm8wlqw0w9rz4jzqwy15byb572"; - revision = "1"; - editedCabalFile = "11mmccdqxplqz7mp1brxpr9hqnkqkhbwnp32mihz4ird0k8gwqij"; + version = "3.1"; + sha256 = "1mhx7sadw7zxaf7qhryrhi4fiyf9v3jcaplkh1syaa7b4725dm7a"; + revision = "2"; + editedCabalFile = "19ac6s4k6yv0lfrhkmgpf000k32rpm91lngs4955158792pa6fi6"; libraryHaskellDepends = [ base containers ghc-boot-th mtl singletons syb template-haskell th-desugar th-orphans transformers @@ -261689,6 +260337,8 @@ self: { ]; description = "siphash: a fast short input PRF"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "siphon" = callPackage @@ -261884,8 +260534,8 @@ self: { }: mkDerivation { pname = "sized"; - version = "1.0.0.1"; - sha256 = "1ayj3fzr4l4l5wmkqnv4h4fxgivmjgamq3wdlpixlwy43wbmf3fy"; + version = "1.0.0.2"; + sha256 = "0l6miv6dw0j5fdkiig7a8akhphrpxs8ls6xdakzpbk53bdh0093n"; libraryHaskellDepends = [ base constraints containers deepseq equational-reasoning ghc-typelits-knownnat ghc-typelits-presburger hashable lens @@ -262184,8 +260834,8 @@ self: { }: mkDerivation { pname = "sketch-frp-copilot"; - version = "1.0.4"; - sha256 = "0drqv0aj7hx0h2z8wz487f0xi62pjgrljxhw3x5wdjxyh6zr43ba"; + version = "1.0.5"; + sha256 = "0vz7p5vsjkvck3znn9ywbyi1vw0cmfb5n48m2sbcm4ky7j5x7yps"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language mtl optparse-applicative @@ -262209,6 +260859,8 @@ self: { ]; description = "A very quick-and-dirty WebSocket server"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "skip-list" = callPackage @@ -262276,17 +260928,19 @@ self: { "skylighting" = callPackage ({ mkDerivation, base, binary, blaze-html, bytestring, containers - , pretty-show, skylighting-core, text + , pretty-show, skylighting-core, skylighting-format-ansi + , skylighting-format-blaze-html, skylighting-format-latex, text }: mkDerivation { pname = "skylighting"; - version = "0.12.3.1"; - sha256 = "08wml20cphj5idv5f20cz0jx7n8f037gy7x5axak83sbd98k71nw"; + version = "0.13.1.2"; + sha256 = "05m11hd6xr4kh6jgdj4mgwa7nbrj29jzca76pjpm0mjiqv3ah3av"; configureFlags = [ "-fexecutable" ]; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base binary containers skylighting-core + base binary containers skylighting-core skylighting-format-ansi + skylighting-format-blaze-html skylighting-format-latex ]; executableHaskellDepends = [ base blaze-html bytestring containers pretty-show text @@ -262296,21 +260950,23 @@ self: { mainProgram = "skylighting"; }) {}; - "skylighting_0_13_1_1" = callPackage + "skylighting_0_13_2" = callPackage ({ mkDerivation, base, binary, blaze-html, bytestring, containers , pretty-show, skylighting-core, skylighting-format-ansi - , skylighting-format-blaze-html, skylighting-format-latex, text + , skylighting-format-blaze-html, skylighting-format-context + , skylighting-format-latex, text }: mkDerivation { pname = "skylighting"; - version = "0.13.1.1"; - sha256 = "01awb174z27iygjssrsgvrq8lapq7282vs4bf5cxdbkjcpncil4b"; + version = "0.13.2"; + sha256 = "0dh4k39ddqca5px2d06ni8n9x3mifvkwd5i16077l472dwjcs879"; configureFlags = [ "-fexecutable" ]; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base binary containers skylighting-core skylighting-format-ansi - skylighting-format-blaze-html skylighting-format-latex + skylighting-format-blaze-html skylighting-format-context + skylighting-format-latex ]; executableHaskellDepends = [ base blaze-html bytestring containers pretty-show text @@ -262322,23 +260978,22 @@ self: { }) {}; "skylighting-core" = callPackage - ({ mkDerivation, aeson, ansi-terminal, attoparsec, base - , base64-bytestring, binary, blaze-html, bytestring - , case-insensitive, colour, containers, criterion, Diff, directory - , filepath, mtl, pretty-show, QuickCheck, safe, tasty, tasty-golden - , tasty-hunit, tasty-quickcheck, text, transformers, utf8-string - , xml-conduit + ({ mkDerivation, aeson, attoparsec, base, base64-bytestring, binary + , bytestring, case-insensitive, colour, containers, criterion, Diff + , directory, filepath, mtl, pretty-show, QuickCheck, safe, tasty + , tasty-golden, tasty-hunit, tasty-quickcheck, text, transformers + , utf8-string, xml-conduit }: mkDerivation { pname = "skylighting-core"; - version = "0.12.3.1"; - sha256 = "08svbbfw27zhlblglagxqvsppkdfibqjnx331jdbfrlj0a9pi5h8"; + version = "0.13.1.2"; + sha256 = "0081zihpiq4w99x4s5bhf0r2j627dzmlnmpca5rq16mqvhz22mmz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal attoparsec base base64-bytestring binary - blaze-html bytestring case-insensitive colour containers directory - filepath mtl safe text transformers utf8-string xml-conduit + aeson attoparsec base base64-bytestring binary bytestring + case-insensitive colour containers directory filepath mtl safe text + transformers utf8-string xml-conduit ]; testHaskellDepends = [ aeson base bytestring containers Diff directory filepath @@ -262352,7 +261007,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "skylighting-core_0_13_1_1" = callPackage + "skylighting-core_0_13_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring, binary , bytestring, case-insensitive, colour, containers, criterion, Diff , directory, filepath, mtl, pretty-show, QuickCheck, safe, tasty @@ -262361,8 +261016,8 @@ self: { }: mkDerivation { pname = "skylighting-core"; - version = "0.13.1.1"; - sha256 = "0cr9crylkawr1dg1aj55mbngn71nih16kfiblxi1gvizgxcrvdys"; + version = "0.13.2"; + sha256 = "0iwzfgynj3l8rnvvrl4kg0i1n31rz15da8cf1943gw1vcfh6w585"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -262415,8 +261070,6 @@ self: { ]; description = "ANSI formatter for skylighting syntax highlighting library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "skylighting-format-blaze-html" = callPackage @@ -262434,6 +261087,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "skylighting-format-context" = callPackage + ({ mkDerivation, base, containers, skylighting-core, text }: + mkDerivation { + pname = "skylighting-format-context"; + version = "0.1"; + sha256 = "066vnhzxknlwzm8wmrzfjfv8ikrj646j21cv9gwm898clqap4yp0"; + libraryHaskellDepends = [ base containers skylighting-core text ]; + description = "ConTeXt formatter for skylighting syntax highlighting library"; + license = lib.licenses.bsd3; + }) {}; + "skylighting-format-latex" = callPackage ({ mkDerivation, base, containers, skylighting-core, text }: mkDerivation { @@ -262456,6 +261120,8 @@ self: { ]; description = "Lucid support for Skylighting"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "skylighting-modding" = callPackage @@ -262622,31 +261288,40 @@ self: { }) {}; "slack-web" = callPackage - ({ mkDerivation, aeson, base, containers, deepseq, errors, fakepull - , hashable, hspec, http-api-data, http-client, http-client-tls - , megaparsec, mtl, QuickCheck, quickcheck-instances, scientific - , servant, servant-client, servant-client-core, text, time - , transformers, unordered-containers + ({ mkDerivation, aeson, aeson-pretty, base, base16-bytestring + , bytestring, classy-prelude, containers, cryptonite + , data-default-class, deepseq, either, errors, fakepull + , generic-arbitrary, hashable, hspec, hspec-core, hspec-discover + , hspec-golden, http-api-data, http-client, http-client-tls + , megaparsec, mono-traversable, mtl, pretty-simple, QuickCheck + , quickcheck-instances, refined, scientific, servant + , servant-client, servant-client-core, string-conversions + , string-variants, template-haskell, text, th-compat, time + , transformers, unordered-containers, vector }: mkDerivation { pname = "slack-web"; - version = "0.4.0.0"; - sha256 = "1l6vls3c941gfvmx11l7xqj1vnngxk5las3pjdw45c93cqfzin74"; + version = "1.6.1.0"; + sha256 = "08cs3y9q76mj0xjfxphm2nnmngcxhdqmdqimxph82143hs4g8qh7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base containers deepseq errors hashable http-api-data - http-client http-client-tls megaparsec mtl scientific servant - servant-client servant-client-core text time transformers - unordered-containers + aeson base base16-bytestring bytestring classy-prelude containers + cryptonite data-default-class deepseq either errors hashable + http-api-data http-client http-client-tls megaparsec + mono-traversable mtl refined scientific servant servant-client + servant-client-core string-conversions string-variants text time + transformers unordered-containers vector ]; testHaskellDepends = [ - aeson base fakepull hspec QuickCheck quickcheck-instances text time + aeson aeson-pretty base bytestring classy-prelude fakepull + generic-arbitrary hspec hspec-core hspec-golden mtl pretty-simple + QuickCheck quickcheck-instances string-conversions string-variants + template-haskell text th-compat time ]; + testToolDepends = [ hspec-discover ]; description = "Bindings for the Slack web API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "slate" = callPackage @@ -262685,8 +261360,8 @@ self: { }: mkDerivation { pname = "slave-thread"; - version = "1.1.0.1"; - sha256 = "05hz0qglxg889l3b0sw9f79xqssw70fd62a766xcvj7aalmrc32i"; + version = "1.1.0.2"; + sha256 = "1pbffrmwd975as495b5b4ad59rajgq1dmbvmp07zfb2rmwhpr5n8"; libraryHaskellDepends = [ base deferred-folds focus foldl stm-containers ]; @@ -262696,8 +261371,6 @@ self: { ]; description = "A fundamental solution to ghost threads and silent exceptions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "sleep" = callPackage @@ -262767,16 +261440,14 @@ self: { }: mkDerivation { pname = "slick"; - version = "1.1.2.2"; - sha256 = "0q6q496cvrsc4gnksihib0dr80cjg0n9vy69h2ani2ax0g75fzqd"; + version = "1.2.0.0"; + sha256 = "1a1k723x0q9i43lvzagqar9fcaprni77r158la09kmmxzdmbzsl2"; libraryHaskellDepends = [ aeson base bytestring directory extra mustache pandoc shake text unordered-containers ]; description = "A quick & easy static site builder built with shake and pandoc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "slidemews" = callPackage @@ -262797,6 +261468,7 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "slidemews"; + broken = true; }) {}; "slim" = callPackage @@ -262975,7 +261647,9 @@ self: { testHaskellDepends = [ base hspec text text-icu ]; description = "Clean URI slugs for Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "slugger"; + broken = true; }) {}; "slugify" = callPackage @@ -262991,35 +261665,13 @@ self: { testToolDepends = [ hspec-discover ]; description = "Convert text into slugs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "slynx" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , elynx-markov, elynx-seq, elynx-tools, elynx-tree, hmatrix - , mwc-random, optparse-applicative, statistics, text, transformers - , vector - }: - mkDerivation { - pname = "slynx"; - version = "0.6.1.1"; - sha256 = "14yn94hl6nlbwa1hk1mgkgckcmb6bvfk2pa3847h98g19bz7qfw4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base bytestring containers elynx-markov elynx-seq - elynx-tools elynx-tree hmatrix mwc-random optparse-applicative - statistics text transformers vector - ]; - executableHaskellDepends = [ base ]; - description = "Handle molecular sequences"; - license = lib.licenses.gpl3Plus; - mainProgram = "slynx"; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "slynx_0_7_0_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, containers - , elynx-markov, elynx-seq, elynx-tools, elynx-tree, hmatrix , matrices, optparse-applicative, random, statistics, text , transformers, vector }: @@ -263037,7 +261689,6 @@ self: { executableHaskellDepends = [ base ]; description = "Handle molecular sequences"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "slynx"; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -263361,6 +262012,8 @@ self: { ]; description = "Combinators for Maybe types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "smash-aeson" = callPackage @@ -263372,6 +262025,7 @@ self: { libraryHaskellDepends = [ aeson base smash unordered-containers ]; description = "Aeson support for the smash library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smash-lens" = callPackage @@ -263384,6 +262038,7 @@ self: { testHaskellDepends = [ base ]; description = "Optics for the `smash` library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smash-microlens" = callPackage @@ -263396,6 +262051,7 @@ self: { testHaskellDepends = [ base ]; description = "Optics for the `smash` library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smash-optics" = callPackage @@ -263407,6 +262063,7 @@ self: { libraryHaskellDepends = [ base optics-core smash ]; description = "Optics for the `smash` library using `optics-core`"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smawk" = callPackage @@ -263651,6 +262308,73 @@ self: { license = lib.licenses.bsd3; }) {}; + "smtlib-backends" = callPackage + ({ mkDerivation, base, bytestring }: + mkDerivation { + pname = "smtlib-backends"; + version = "0.2"; + sha256 = "0p77m8f937zsnkxwc44pwhbm2dghbvw7f0xr867f07b1kzl6vpdk"; + libraryHaskellDepends = [ base bytestring ]; + description = "Low-level functions for SMT-LIB-based interaction with SMT solvers"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "smtlib-backends-process" = callPackage + ({ mkDerivation, async, base, bytestring, data-default + , smtlib-backends, smtlib-backends-tests, tasty, tasty-hunit + , typed-process + }: + mkDerivation { + pname = "smtlib-backends-process"; + version = "0.2"; + sha256 = "11jcx0ixf0yd9wjc77xvfsr1hvb5awr1wxvl18y54jdlkff8qfzz"; + libraryHaskellDepends = [ + async base bytestring data-default smtlib-backends typed-process + ]; + testHaskellDepends = [ + base bytestring data-default smtlib-backends smtlib-backends-tests + tasty tasty-hunit typed-process + ]; + description = "An SMT-LIB backend running solvers as external processes"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "smtlib-backends-tests" = callPackage + ({ mkDerivation, base, smtlib-backends, tasty, tasty-hunit }: + mkDerivation { + pname = "smtlib-backends-tests"; + version = "0.2"; + sha256 = "14n5qdan4kbcc9h1agdnvc4hbaycmpm2srdx0c19g76iwc3598c8"; + libraryHaskellDepends = [ base smtlib-backends tasty tasty-hunit ]; + description = "Testing SMT-LIB backends"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "smtlib-backends-z3" = callPackage + ({ mkDerivation, base, bytestring, containers, gomp, inline-c + , smtlib-backends, smtlib-backends-tests, tasty, tasty-hunit, z3 + }: + mkDerivation { + pname = "smtlib-backends-z3"; + version = "0.2"; + sha256 = "0ar2ian2ap2zwq7x2vr4pf2ilkhfdkxl23mc4kga0hrq2n0nknf0"; + libraryHaskellDepends = [ + base bytestring containers inline-c smtlib-backends + ]; + librarySystemDepends = [ gomp z3 ]; + testHaskellDepends = [ + base bytestring smtlib-backends smtlib-backends-tests tasty + tasty-hunit + ]; + description = "An SMT-LIB backend implemented using Z3's C API"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) gomp; inherit (pkgs) z3;}; + "smtlib2" = callPackage ({ mkDerivation, base, constraints, containers, dependent-map , dependent-sum, mtl, template-haskell @@ -263937,6 +262661,8 @@ self: { pname = "snap"; version = "1.1.3.1"; sha256 = "1zq7yz5w9ms8zm5z4c05awkdarqbmb7pp13y9c1x04qfd5ba4c47"; + revision = "2"; + editedCabalFile = "16rkb05mrvi7binynawkshsvikdvxqrv8bxxjcgs4k30arx39cz5"; libraryHaskellDepends = [ aeson attoparsec base bytestring cereal clientsession configurator containers directory directory-tree dlist fail filepath hashable @@ -264007,6 +262733,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "snap-auth-cli"; + broken = true; }) {}; "snap-blaze" = callPackage @@ -264030,7 +262757,6 @@ self: { description = "blaze-html-clay integration for Snap"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snap-configuration-utilities" = callPackage @@ -264062,8 +262788,8 @@ self: { pname = "snap-core"; version = "1.0.5.0"; sha256 = "0hf671g7h4nikfvi05q3mmcxhfcsh874dkansssn0mc68k9fsak4"; - revision = "2"; - editedCabalFile = "14cvxfyq4d0sjyyj1qxphzywgq63kxmc4bcgwfd6hphqd60h2p35"; + revision = "3"; + editedCabalFile = "02r6plphl4vqig3xap9amdib0qjd98nqpn5jhy6hsbiwh3p7cy9b"; libraryHaskellDepends = [ attoparsec base bytestring bytestring-builder case-insensitive containers directory filepath hashable HUnit io-streams lifted-base @@ -264194,6 +262920,8 @@ self: { ]; description = "Snap dynamic loader"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snap-loader-static" = callPackage @@ -264267,8 +262995,8 @@ self: { pname = "snap-server"; version = "1.1.2.0"; sha256 = "0w4yv9a5ilpma0335ariwap2iscmdbaaif88lq3cm7px910nyc4j"; - revision = "1"; - editedCabalFile = "0ijwp0s976cpb4nny8l7vpf5xny6k8dy2xb1rya1l2x5yzj7hlrj"; + revision = "2"; + editedCabalFile = "0dzsn3y7jnha1jbp0n5igjrg4cb8kggps798rlix60d66iy8r1l2"; configureFlags = [ "-fopenssl" ]; isLibrary = true; isExecutable = true; @@ -264377,6 +263105,7 @@ self: { description = "Snap Framework utilities"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snap-web-routes" = callPackage @@ -264474,6 +263203,7 @@ self: { description = "Provides an Acid-State backend for the Auth Snaplet"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-coffee" = callPackage @@ -264492,6 +263222,7 @@ self: { description = "CoffeeScript for Snap, auto-compilation and pre-compilation"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-css-min" = callPackage @@ -264796,6 +263527,7 @@ self: { description = "mysql-simple snaplet for the Snap Framework"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-oauth" = callPackage @@ -264920,6 +263652,7 @@ self: { description = "A ReCAPTCHA verification snaplet with Heist integration and connection sharing"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-redis" = callPackage @@ -265099,8 +263832,6 @@ self: { ]; description = "sqlite-simple snaplet for the Snap Framework"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snaplet-sqlite-simple-jwt-auth" = callPackage @@ -265121,6 +263852,7 @@ self: { description = "Snaplet for JWT authentication with snaplet-sqlite-simple"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-stripe" = callPackage @@ -265221,6 +263953,8 @@ self: { ]; description = "Bindings to the Google Snappy library for fast compression/decompression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) snappy;}; "snappy-conduit" = callPackage @@ -265233,7 +263967,6 @@ self: { description = "Conduit bindings for Snappy (see snappy package)"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snappy-framing" = callPackage @@ -265245,6 +263978,7 @@ self: { libraryHaskellDepends = [ array base binary bytestring snappy ]; description = "Snappy Framing Format in Haskell"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "snappy-iteratee" = callPackage @@ -265271,6 +264005,7 @@ self: { ]; description = "Lazy bytestring compression and decompression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sndfile-enumerators" = callPackage @@ -265451,24 +264186,22 @@ self: { "snowchecked" = callPackage ({ mkDerivation, base, bytestring, data-default, deepseq, hedgehog - , text, text-conversions, time, wide-word + , text, text-conversions, time, unliftio, wide-word }: mkDerivation { pname = "snowchecked"; - version = "0.0.1.2"; - sha256 = "1dxj23aa2gacf5gjb53bqvy7rfv12b5y8aqijvvj436lzabrlarc"; + version = "0.0.2.0"; + sha256 = "0n0pi92mjyg2jk0h1jbiyj8ib6jzgnkzfmnvrz41r6gd189hkn7a"; libraryHaskellDepends = [ base bytestring data-default deepseq text text-conversions time wide-word ]; testHaskellDepends = [ base bytestring data-default deepseq hedgehog text text-conversions - time wide-word + time unliftio wide-word ]; description = "A checksummed variation on Twitter's Snowflake UID generation algorithm"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snowflake" = callPackage @@ -265590,6 +264323,7 @@ self: { ]; description = "SOAP client tools"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "soap-openssl" = callPackage @@ -265608,6 +264342,7 @@ self: { ]; description = "TLS-enabled SOAP transport (using openssl bindings)"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "soap-tls" = callPackage @@ -265627,6 +264362,7 @@ self: { ]; description = "TLS-enabled SOAP transport (using tls package)"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "sock2stream" = callPackage @@ -265820,10 +264556,8 @@ self: { }: mkDerivation { pname = "sockets"; - version = "0.5.0.0"; - sha256 = "0pxrdxmiqyp5xs24sp22b4rldhzm1rahkdq5lc24m30g4p609xa3"; - revision = "1"; - editedCabalFile = "1ji60m0wj3jwdfwdjaxzic41rwdnq72m9xspn64f66c872lx137d"; + version = "0.6.1.0"; + sha256 = "0isnl0vzdm95fgpjpib6ivgwma8acyqc41020lqa3bdzx82whcsy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -265862,8 +264596,6 @@ self: { ]; description = "Support for the Sockets and Pipes book"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "socketson" = callPackage @@ -265890,7 +264622,6 @@ self: { description = "A small websocket backend provider"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "socks" = callPackage @@ -265968,7 +264699,6 @@ self: { ]; description = "Generate CSV Exports of your Solana Staking Rewards"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "solana-staking-csvs"; }) {}; @@ -265983,6 +264713,8 @@ self: { libraryHaskellDepends = [ base time ]; description = "Simple library for solar calculations"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "solga" = callPackage @@ -266145,7 +264877,6 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "svdump"; - broken = true; }) {}; "sop-core" = callPackage @@ -266342,6 +265073,7 @@ self: { ]; description = "Approximate a song from other pieces of sound"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "sound-collage"; }) {}; @@ -266356,7 +265088,6 @@ self: { executableHaskellDepends = [ base containers parseargs WAVE ]; description = "Audio delay line"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "delay"; }) {}; @@ -266371,7 +265102,6 @@ self: { executableHaskellDepends = [ base split WAVE ]; description = "sound generator"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "soundgen"; }) {}; @@ -266497,6 +265227,7 @@ self: { libraryPkgconfigDepends = [ sox ]; description = "Write, read, convert audio signals using libsox"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) sox;}; "soyuz" = callPackage @@ -266669,7 +265400,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A simple programming and debugging environment"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; + badPlatforms = lib.platforms.darwin; mainProgram = "spade"; }) {}; @@ -266987,7 +265718,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "spartacon"; - broken = true; }) {}; "spata" = callPackage @@ -267020,6 +265750,7 @@ self: { ]; description = "3d math including quaternions/euler angles/dcms and utility functions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "spatial-rotations" = callPackage @@ -267649,7 +266380,6 @@ self: { description = "B-Splines, other splines, and NURBS"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "splint" = callPackage @@ -267661,6 +266391,8 @@ self: { libraryHaskellDepends = [ base containers ghc hlint stm ]; description = "HLint as a GHC source plugin"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "split" = callPackage @@ -267716,6 +266448,7 @@ self: { ]; description = "Split a big audio file into pieces at positions of silence"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "split-record"; }) {}; @@ -267762,22 +266495,6 @@ self: { }: mkDerivation { pname = "splitmix-distributions"; - version = "0.9.0.0"; - sha256 = "0y6v93kgbldkf9pznrfy8848njy7cln7bd3nrx2b7dmrz6yd4rpz"; - libraryHaskellDepends = [ - base containers erf exceptions mtl splitmix transformers - ]; - testHaskellDepends = [ base erf hspec mtl splitmix transformers ]; - description = "Random samplers for some common distributions, based on splitmix"; - license = lib.licenses.bsd3; - }) {}; - - "splitmix-distributions_1_0_0" = callPackage - ({ mkDerivation, base, containers, erf, exceptions, hspec, mtl - , splitmix, transformers - }: - mkDerivation { - pname = "splitmix-distributions"; version = "1.0.0"; sha256 = "03ffkpz3877y2jj1cblxk5gvcpl8zdsiccaq0x7xh761fgz3vsd6"; libraryHaskellDepends = [ @@ -267786,7 +266503,6 @@ self: { testHaskellDepends = [ base erf hspec mtl splitmix transformers ]; description = "Random samplers for some common distributions, based on splitmix"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "splitter" = callPackage @@ -268011,7 +266727,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "sproxy"; - broken = true; }) {}; "sproxy-web" = callPackage @@ -268039,7 +266754,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "sproxy-web"; - broken = true; }) {}; "sproxy2" = callPackage @@ -268065,6 +266779,7 @@ self: { ]; description = "Secure HTTP proxy for authenticating users via OAuth2"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "sproxy2"; }) {}; @@ -268272,24 +266987,25 @@ self: { "sqlite-easy" = callPackage ({ mkDerivation, base, bytestring, direct-sqlite, hspec - , hspec-discover, migrant-core, resource-pool, text + , hspec-discover, migrant-core, mtl, resource-pool, text, unliftio + , unliftio-core }: mkDerivation { pname = "sqlite-easy"; - version = "0.1.0.0"; - sha256 = "0i971dvfsdxpm6chxbc53flcw8gyk45nsp8pm0q2avl8p9sab05f"; - revision = "1"; - editedCabalFile = "0b3sa10mk3c2gjpsgdnylb3iqpwycfnhpscqhi68s0vfvq2ph9w8"; + version = "0.2.0.1"; + sha256 = "03sgw1g1iqkf1rv3dz5y9jh7z6iripx8dz9cs5ixznislsxkmg5l"; libraryHaskellDepends = [ - base bytestring direct-sqlite migrant-core resource-pool text + base bytestring direct-sqlite migrant-core mtl resource-pool text + unliftio-core ]; testHaskellDepends = [ - base direct-sqlite hspec hspec-discover text + base direct-sqlite hspec hspec-discover text unliftio ]; testToolDepends = [ hspec-discover ]; description = "A primitive yet easy to use sqlite library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sqlite-simple" = callPackage @@ -268332,13 +267048,12 @@ self: { }: mkDerivation { pname = "sqlite-simple-interpolate"; - version = "0.1"; - sha256 = "0cjkk3zy3kasddkicwy8wklcj7i6bg779b82f1liaimsiwnmjpf3"; - revision = "1"; - editedCabalFile = "04dpspiia4mlpwfpdnsnyb24qsvy7da25rcbbyxyavadz3ri44hm"; + version = "0.1.1"; + sha256 = "1vi43mm6lwdpsq0r2gs7nsrn4g88r3q4d8g5gmm7al8ziz9c39vq"; libraryHaskellDepends = [ base haskell-src-meta mtl parsec sqlite-simple template-haskell ]; + testHaskellDepends = [ base sqlite-simple ]; description = "Interpolated SQLite queries via quasiquotation"; license = lib.licenses.bsd3; }) {}; @@ -268423,8 +267138,8 @@ self: { }: mkDerivation { pname = "squeal-postgresql"; - version = "0.9.0.0"; - sha256 = "1gd421zkpd5lg1dl94297dslq43pjl274ahdd947jjvgr6gr193n"; + version = "0.9.1.0"; + sha256 = "0jy2324j4jrv8nc7dks4286vmr2llbb8v7b32zqlrwndgyy41kkp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -268449,6 +267164,7 @@ self: { ]; description = "Squeal PostgreSQL Library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "example"; maintainers = [ lib.maintainers.erictapen ]; }) {}; @@ -268467,6 +267183,7 @@ self: { ]; description = "LTree extension for Squeal"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "squeal-postgresql-uuid-ossp" = callPackage @@ -268478,6 +267195,7 @@ self: { libraryHaskellDepends = [ base squeal-postgresql ]; description = "UUID OSSP extension for Squeal"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "squeather" = callPackage @@ -268547,7 +267265,6 @@ self: { description = "Module limbo"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "srcinst" = callPackage @@ -268638,6 +267355,8 @@ self: { ]; description = "Dhall Encoder/Decoder for SRT"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "srt-formatting" = callPackage @@ -268656,6 +267375,25 @@ self: { license = lib.licenses.mit; }) {}; + "srv" = callPackage + ({ mkDerivation, async, base, bytestring, containers, directory + , raw-strings-qq, wai, wai-app-static, warp, warp-tls, yaml + }: + mkDerivation { + pname = "srv"; + version = "0.1.0.0"; + sha256 = "0bbiz8n8v8lscxzxdhqwppyvrsvapk5xilm35kah1bp0rs8mi1w0"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + async base bytestring containers directory raw-strings-qq wai + wai-app-static warp warp-tls yaml + ]; + description = "A simple web server for local usage"; + license = lib.licenses.asl20; + mainProgram = "srv"; + }) {}; + "sscan" = callPackage ({ mkDerivation, async, base, brick, directory, filepath, microlens , microlens-th, process, temporary, text, time, vty @@ -269044,8 +267782,104 @@ self: { pname = "stack"; version = "2.9.1"; sha256 = "01020dx89m07qmjs58vs2kidhkzq3106md08w6c65bzxvlf6kcwk"; - revision = "3"; - editedCabalFile = "1i0ddb17kzxvlv3xpgyi3acsi21h6iadwwv21ih063cdk9ilysxg"; + revision = "4"; + editedCabalFile = "1ixa4k1jcsrq8i6zd5g483sp86kp87i2bifd5vfvpjyfzayb1n3d"; + configureFlags = [ + "-fdisable-git-info" "-fhide-dependency-versions" + "-fsupported-build" + ]; + isLibrary = true; + isExecutable = true; + setupHaskellDepends = [ base Cabal filepath ]; + libraryHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array async attoparsec base + base64-bytestring bytestring Cabal casa-client casa-types colour + conduit conduit-extra containers cryptonite cryptonite-conduit + deepseq directory echo exceptions extra file-embed filelock + filepath fsnotify generic-deriving hackage-security hashable + hi-file-parser hpack hpc http-client http-client-tls http-conduit + http-download http-types memory microlens mintty mono-traversable + mtl mustache neat-interpolation network-uri open-browser + optparse-applicative pantry path path-io persistent + persistent-sqlite persistent-template pretty primitive process + project-template random retry rio rio-prettyprint semigroups split + stm streaming-commons tar template-haskell temporary text + text-metrics th-reify-many time tls transformers typed-process + unicode-transforms unix unix-compat unliftio unordered-containers + vector yaml zip-archive zlib + ]; + executableHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array async attoparsec base + base64-bytestring bytestring Cabal casa-client casa-types colour + conduit conduit-extra containers cryptonite cryptonite-conduit + deepseq directory echo exceptions extra file-embed filelock + filepath fsnotify generic-deriving hackage-security hashable + hi-file-parser hpack hpc http-client http-client-tls http-conduit + http-download http-types memory microlens mintty mono-traversable + mtl mustache neat-interpolation network-uri open-browser + optparse-applicative pantry path path-io persistent + persistent-sqlite persistent-template pretty primitive process + project-template random retry rio rio-prettyprint semigroups split + stm streaming-commons tar template-haskell temporary text + text-metrics th-reify-many time tls transformers typed-process + unicode-transforms unix unix-compat unliftio unordered-containers + vector yaml zip-archive zlib + ]; + testHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array async attoparsec base + base64-bytestring bytestring Cabal casa-client casa-types colour + conduit conduit-extra containers cryptonite cryptonite-conduit + deepseq directory echo exceptions extra file-embed filelock + filepath fsnotify generic-deriving hackage-security hashable + hi-file-parser hpack hpc hspec http-client http-client-tls + http-conduit http-download http-types memory microlens mintty + mono-traversable mtl mustache neat-interpolation network-uri + open-browser optparse-applicative pantry path path-io persistent + persistent-sqlite persistent-template pretty primitive process + project-template QuickCheck random raw-strings-qq retry rio + rio-prettyprint semigroups smallcheck split stm streaming-commons + tar template-haskell temporary text text-metrics th-reify-many time + tls transformers typed-process unicode-transforms unix unix-compat + unliftio unordered-containers vector yaml zip-archive zlib + ]; + testToolDepends = [ hspec-discover ]; + doCheck = false; + preCheck = "export HOME=$TMPDIR"; + postInstall = '' + exe=$out/bin/stack + mkdir -p $out/share/bash-completion/completions + $exe --bash-completion-script $exe >$out/share/bash-completion/completions/stack + ''; + description = "The Haskell Tool Stack"; + license = lib.licenses.bsd3; + mainProgram = "stack"; + maintainers = [ lib.maintainers.cdepillabout ]; + }) {}; + + "stack_2_9_3" = callPackage + ({ mkDerivation, aeson, annotated-wl-pprint, ansi-terminal, array + , async, attoparsec, base, base64-bytestring, bytestring, Cabal + , casa-client, casa-types, colour, conduit, conduit-extra + , containers, cryptonite, cryptonite-conduit, deepseq, directory + , echo, exceptions, extra, file-embed, filelock, filepath, fsnotify + , generic-deriving, hackage-security, hashable, hi-file-parser + , hpack, hpc, hspec, hspec-discover, http-client, http-client-tls + , http-conduit, http-download, http-types, memory, microlens + , mintty, mono-traversable, mtl, mustache, neat-interpolation + , network-uri, open-browser, optparse-applicative, pantry, path + , path-io, persistent, persistent-sqlite, persistent-template + , pretty, primitive, process, project-template, QuickCheck, random + , raw-strings-qq, retry, rio, rio-prettyprint, semigroups + , smallcheck, split, stm, streaming-commons, tar, template-haskell + , temporary, text, text-metrics, th-reify-many, time, tls + , transformers, typed-process, unicode-transforms, unix + , unix-compat, unliftio, unordered-containers, vector, yaml + , zip-archive, zlib + }: + mkDerivation { + pname = "stack"; + version = "2.9.3"; + sha256 = "1p7j05cm9y3vbj5wkcjsia65agfzyd2r8r1fvd4l4qnx4yr0qw64"; configureFlags = [ "-fdisable-git-info" "-fhide-dependency-versions" "-fsupported-build" @@ -269114,6 +267948,7 @@ self: { ''; description = "The Haskell Tool Stack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "stack"; maintainers = [ lib.maintainers.cdepillabout ]; }) {}; @@ -269225,7 +268060,6 @@ self: { license = lib.licenses.isc; hydraPlatforms = lib.platforms.none; mainProgram = "shc"; - broken = true; }) {}; "stack-lib" = callPackage @@ -269900,31 +268734,33 @@ self: { ]; description = "Program to fold GHC prof files into flamegraph input"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "stackcollapse-ghc"; + broken = true; }) {}; "stackctl" = callPackage ({ mkDerivation, aeson, aeson-casing, aeson-pretty, amazonka , amazonka-cloudformation, amazonka-core, amazonka-ec2 , amazonka-lambda, amazonka-sts, base, Blammo, bytestring, cfn-flip - , conduit, containers, errors, exceptions, extra, fast-logger - , filepath, Glob, hspec, lens, lens-aeson, monad-logger - , optparse-applicative, resourcet, rio, text, time, unliftio - , unliftio-core, unordered-containers, uuid, yaml + , conduit, containers, errors, exceptions, extra, filepath, Glob + , hspec, lens, lens-aeson, monad-logger, optparse-applicative + , resourcet, rio, text, time, unliftio, unliftio-core + , unordered-containers, uuid, yaml }: mkDerivation { pname = "stackctl"; - version = "1.1.0.3"; - sha256 = "0vvhvyvc6dz8l0df3f14qiy5851n2mv45gvjyz1cq94f44higfjw"; + version = "1.1.2.2"; + sha256 = "1rwq3brdlspzf16kc0kybx9yl15505ixxf1y7fb8cwqjwkgbqssn"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-casing aeson-pretty amazonka amazonka-cloudformation amazonka-core amazonka-ec2 amazonka-lambda amazonka-sts base Blammo bytestring cfn-flip conduit containers errors exceptions extra - fast-logger filepath Glob lens lens-aeson monad-logger - optparse-applicative resourcet rio text time unliftio unliftio-core - unordered-containers uuid yaml + filepath Glob lens lens-aeson monad-logger optparse-applicative + resourcet rio text time unliftio unliftio-core unordered-containers + uuid yaml ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ base hspec yaml ]; @@ -269978,6 +268814,8 @@ self: { ]; description = "GHC.Generics style staged generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stagen" = callPackage @@ -270487,8 +269325,8 @@ self: { }: mkDerivation { pname = "statistics"; - version = "0.16.1.0"; - sha256 = "000rkq5niabbdq0adca81rd19pgazvbnpww8cakhxdh5frf2lj78"; + version = "0.16.1.2"; + sha256 = "15yr0w25dqaqz16635qxkxvr6nj6mkjj9pl7wzw5yr3pn84xjryq"; libraryHaskellDepends = [ aeson async base binary data-default-class deepseq dense-linear-algebra math-functions mwc-random parallel primitive @@ -270846,6 +269684,19 @@ self: { broken = true; }) {}; + "stdcxx" = callPackage + ({ mkDerivation, base, fficxx, fficxx-runtime, template-haskell }: + mkDerivation { + pname = "stdcxx"; + version = "0.7.0.0"; + sha256 = "0r2zm4y1rwpv5pwnlqc51hy746j6hnvhj44vagyxij6ja7xhqxsg"; + libraryHaskellDepends = [ + base fficxx fficxx-runtime template-haskell + ]; + description = "Binding to Standard Template Library C++"; + license = lib.licenses.bsd2; + }) {}; + "stdf" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, binary, bytestring , containers, data-binary-ieee754, split, text, time, unix-time @@ -270914,38 +269765,37 @@ self: { }) {}; "steeloverseer" = callPackage - ({ mkDerivation, aeson, ansi-terminal, async, base, bytestring - , containers, directory, exceptions, filepath, fsnotify, hspec - , managed, mtl, optparse-applicative, process, regex-tdfa - , semigroups, stm, streaming, text, unix, yaml + ({ mkDerivation, aeson, aeson-compat, ansi-terminal, async, base + , bytestring, containers, directory, exceptions, filepath, fsnotify + , hspec, hspec-discover, managed, mtl, optparse-applicative + , process, regex-tdfa, semigroups, stm, streaming, text, unix, yaml }: mkDerivation { pname = "steeloverseer"; - version = "2.1.0.0"; - sha256 = "1l2pfk6fdnc2ssmcjmwj8w5wfk6ra4n880nbxr670kzrlnr2vqg1"; - revision = "1"; - editedCabalFile = "0vb2k7c02gmnn03zq84pb9ycsl8nkahkddwzn3nh0jsgb2jc9pln"; + version = "2.1.0.1"; + sha256 = "1zz30i6icz3pghrvcyvp8xfzdf3zn3zwqc53chpksb8mkm26fngp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal async base bytestring containers exceptions - fsnotify managed mtl process regex-tdfa semigroups stm streaming - text unix yaml + aeson aeson-compat ansi-terminal async base bytestring containers + exceptions fsnotify managed mtl process regex-tdfa semigroups stm + streaming text unix yaml ]; + libraryToolDepends = [ hspec-discover ]; executableHaskellDepends = [ - async base bytestring directory exceptions filepath fsnotify - managed mtl optparse-applicative regex-tdfa semigroups stm + aeson-compat async base bytestring directory exceptions filepath + fsnotify managed mtl optparse-applicative regex-tdfa semigroups stm streaming text yaml ]; + executableToolDepends = [ hspec-discover ]; testHaskellDepends = [ - async base bytestring exceptions fsnotify hspec managed mtl - regex-tdfa semigroups stm streaming text yaml + aeson-compat async base bytestring exceptions fsnotify hspec + managed mtl regex-tdfa semigroups stm streaming text yaml ]; + testToolDepends = [ hspec-discover ]; description = "A file watcher and development tool"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sos"; - broken = true; }) {}; "stego-uuid" = callPackage @@ -271287,6 +270137,8 @@ self: { testHaskellDepends = [ base hspec stm ]; description = "A library for constructing incremental computations"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stm-io-hooks" = callPackage @@ -271423,6 +270275,7 @@ self: { testHaskellDepends = [ async base QuickCheck random Unique ]; description = "STM wrapper around Control.Concurrent.Supply."; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "stm-tlist" = callPackage @@ -271546,20 +270399,21 @@ self: { }) {}; "stooq-api" = callPackage - ({ mkDerivation, aeson, base, bytestring, lens, stringsearch, text - , time, utf8-string, vector, wreq + ({ mkDerivation, base, bytestring, cassava, lens, text, time + , utf8-string, vector, wreq }: mkDerivation { pname = "stooq-api"; - version = "0.3.1.0"; - sha256 = "0a2hnhrb00h52z0717zbx1ha4i5aixps0b9n3sw7svdjvz3dygkp"; + version = "0.4.1.0"; + sha256 = "0kjkccqwfr9bdlca8mw7ryw0jr88zs9ap9s9f2idzbdqdqavidiq"; libraryHaskellDepends = [ - aeson base bytestring lens stringsearch text time utf8-string - vector wreq + base bytestring cassava lens text time utf8-string vector wreq ]; doHaddock = false; description = "A simple wrapper around stooq.pl API for downloading market data."; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stopwatch" = callPackage @@ -271695,6 +270549,8 @@ self: { ]; description = "Fast, packed, strict storable arrays with a list interface like ByteString"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "storablevector-carray" = callPackage @@ -271706,6 +270562,7 @@ self: { libraryHaskellDepends = [ base carray storablevector utility-ht ]; description = "Conversion between storablevector and carray"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "storablevector-streamfusion" = callPackage @@ -272062,7 +270919,6 @@ self: { description = "Programmatically edit MIDI event streams via ALSA"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "streaming" = callPackage @@ -272493,6 +271349,8 @@ self: { pname = "streaming-postgresql-simple"; version = "0.2.0.5"; sha256 = "1gaj099hxdvyzmzz6z0s1kzv3qqv3py609jz7cp2j3f6497dhdqa"; + revision = "1"; + editedCabalFile = "11c8gc25bzqxa4mxj0shry5hhhll8i3yv6bspznl1d7gz3pxhrp4"; libraryHaskellDepends = [ base bytestring exceptions postgresql-libpq postgresql-simple resourcet safe-exceptions streaming transformers @@ -272569,8 +271427,6 @@ self: { libraryPkgconfigDepends = [ zlib ]; description = "http, attoparsec, pipes and other utilities for the streaming libraries"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) zlib;}; "streaming-wai" = callPackage @@ -272668,6 +271524,8 @@ self: { testSystemDepends = [ archive ]; description = "Stream data from archives using the streamly library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {archive = null;}; "streamly-binary" = callPackage @@ -272697,8 +271555,8 @@ self: { pname = "streamly-bytestring"; version = "0.1.4"; sha256 = "1qwgrxm2x46951si18sbmqhq4fik26l07kmspv23m9q3drn0mklc"; - revision = "3"; - editedCabalFile = "0jbiq6g025qyhvl05f0shvnak4jnpxngzjz1n73c8hnjb47kzc21"; + revision = "4"; + editedCabalFile = "1mzrj7bkmvz27svxjaknrgvxwvz9zpw0ifvpvdbi7idlfmh01mqa"; libraryHaskellDepends = [ base bytestring streamly ]; testHaskellDepends = [ base bytestring directory filepath hspec hspec-discover @@ -272710,6 +271568,8 @@ self: { ]; description = "Library for streamly and bytestring interoperation"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "streamly-cassava" = callPackage @@ -272795,6 +271655,8 @@ self: { testSystemDepends = [ lmdb ]; description = "Stream data to or from LMDB databases using the streamly library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) lmdb;}; "streamly-lz4" = callPackage @@ -272835,6 +271697,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Posix related streaming APIs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "streamly-process" = callPackage @@ -272874,15 +271737,15 @@ self: { }) {}; "streams" = callPackage - ({ mkDerivation, adjunctions, base, comonad, distributive - , semigroupoids, semigroups + ({ mkDerivation, adjunctions, base, boring, comonad, distributive + , semigroupoids }: mkDerivation { pname = "streams"; - version = "3.3"; - sha256 = "0h2fjlcsqnwwsqdk371m6drb119rx76b122mmwkd7zl3d86zhcr9"; + version = "3.3.1"; + sha256 = "11aggnf2pcjhhm8h69dhgysg64kyzpw9d493mh2lkcc7w4v4wcig"; libraryHaskellDepends = [ - adjunctions base comonad distributive semigroupoids semigroups + adjunctions base boring comonad distributive semigroupoids ]; description = "Various Haskell 2010 stream comonads"; license = lib.licenses.bsd3; @@ -272940,6 +271803,8 @@ self: { ]; description = "Core components of \"strelka\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "strelka-wai" = callPackage @@ -272956,6 +271821,7 @@ self: { ]; description = "WAI compatibility layer for \"strelka\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "strict" = callPackage @@ -273020,40 +271886,40 @@ self: { "strict-containers" = callPackage ({ mkDerivation, array, base, base-orphans, binary, ChasingBottoms , containers, deepseq, hashable, HUnit, indexed-traversable - , primitive, QuickCheck, random, strict, tasty, tasty-hunit - , tasty-quickcheck, template-haskell, test-framework - , test-framework-hunit, test-framework-quickcheck2, transformers + , nothunks, primitive, QuickCheck, random, strict, tasty + , tasty-hunit, tasty-quickcheck, template-haskell, transformers , unordered-containers, vector, vector-binary-instances }: mkDerivation { pname = "strict-containers"; - version = "0.1"; - sha256 = "0rb5mhz1f1g79c7c85q6pnars7qs3qzyl2gsc48p9sd2739q5nzs"; + version = "0.2"; + sha256 = "128aw17c2m3rh2v23c2vdgk7f7rk11plwkzq2carrm1x5nvhrki7"; libraryHaskellDepends = [ array base binary containers deepseq hashable indexed-traversable - primitive strict unordered-containers vector + primitive strict template-haskell unordered-containers vector vector-binary-instances ]; testHaskellDepends = [ - array base base-orphans ChasingBottoms containers deepseq hashable - HUnit primitive QuickCheck random tasty tasty-hunit - tasty-quickcheck template-haskell test-framework - test-framework-hunit test-framework-quickcheck2 transformers - unordered-containers vector + array base base-orphans ChasingBottoms containers deepseq HUnit + nothunks primitive QuickCheck random tasty tasty-hunit + tasty-quickcheck template-haskell transformers vector ]; description = "Strict containers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "strict-containers-lens" = callPackage ({ mkDerivation, base, hashable, lens, strict-containers }: mkDerivation { pname = "strict-containers-lens"; - version = "0.1"; - sha256 = "0162vqkwm9z1pyizvs76fbraw6z43w8j1k7ag25l9lv67gydl4c1"; + version = "0.2"; + sha256 = "08m4brq8sbdi44cw3klakaw3dax3y9x94kxniv8w6dyqmf5as38w"; libraryHaskellDepends = [ base hashable lens strict-containers ]; description = "Strict containers - Lens instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "strict-containers-serialise" = callPackage @@ -273062,13 +271928,14 @@ self: { }: mkDerivation { pname = "strict-containers-serialise"; - version = "0.1"; - sha256 = "17hsb90awsrgp83nkzjyr51wz7z5v4fii862arqfjkjqm6scb4d3"; + version = "0.2"; + sha256 = "10y0pcvxidq39z284ffac4sl6yg6cq00x1mmdnwcbaxiq8xhm3hk"; libraryHaskellDepends = [ base cborg hashable serialise strict-containers ]; description = "Strict containers - Serialise instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "strict-data" = callPackage @@ -273122,6 +271989,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "strict-impl-params" = callPackage + ({ mkDerivation, base, ghc, ghc-prim, template-haskell }: + mkDerivation { + pname = "strict-impl-params"; + version = "1.0.0"; + sha256 = "0qbc5vk8079vcwxj8sgy696jd629arsws92bcv3vcavnkvzz696c"; + libraryHaskellDepends = [ base ghc ghc-prim template-haskell ]; + description = "Plugin for making top-level implicit parameters strict"; + license = lib.licenses.mit; + }) {}; + "strict-io" = callPackage ({ mkDerivation, base, deepseq, extensible-exceptions }: mkDerivation { @@ -273420,6 +272298,35 @@ self: { license = lib.licenses.bsd3; }) {}; + "string-interpolate_0_3_2_0" = callPackage + ({ mkDerivation, base, bytestring, criterion, deepseq, formatting + , haskell-src-exts, haskell-src-meta, hspec, hspec-core + , interpolate, neat-interpolation, QuickCheck, quickcheck-instances + , quickcheck-text, quickcheck-unicode, split, template-haskell + , text, text-conversions, unordered-containers, utf8-string + }: + mkDerivation { + pname = "string-interpolate"; + version = "0.3.2.0"; + sha256 = "1sdd472rvykrqkv76745vavpycvb0dzcaxs3yw9dfczaxaz16xws"; + libraryHaskellDepends = [ + base bytestring haskell-src-exts haskell-src-meta split + template-haskell text text-conversions utf8-string + ]; + testHaskellDepends = [ + base bytestring hspec hspec-core QuickCheck quickcheck-instances + quickcheck-text quickcheck-unicode template-haskell text + unordered-containers + ]; + benchmarkHaskellDepends = [ + base bytestring criterion deepseq formatting interpolate + neat-interpolation QuickCheck text + ]; + description = "Haskell string/text/bytestring interpolation that just works"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "string-interpreter" = callPackage ({ mkDerivation, base, cli-arguments, phonetic-languages-basis , phonetic-languages-permutations-array @@ -273562,18 +272469,25 @@ self: { }) {}; "string-variants" = callPackage - ({ mkDerivation, aeson, base, bytestring, mono-traversable - , QuickCheck, refined, refinery, string-conversions - , template-haskell, text + ({ mkDerivation, aeson, base, bytestring, hedgehog, hspec + , hspec-core, hspec-discover, hspec-expectations, hspec-hedgehog + , HUnit, mono-traversable, QuickCheck, refined, refinery + , string-conversions, template-haskell, text }: mkDerivation { pname = "string-variants"; - version = "0.1.0.2"; - sha256 = "0lrcjx3ci2kd2347klkwz01cf8mhzfk91sl7301q44cf8fg42az4"; + version = "0.2.0.0"; + sha256 = "0rzxvqv6waggspqbph4n0q249v0h615965rqlbbhv8a3p87kmdcd"; libraryHaskellDepends = [ aeson base bytestring mono-traversable QuickCheck refined refinery string-conversions template-haskell text ]; + testHaskellDepends = [ + aeson base bytestring hedgehog hspec hspec-core hspec-expectations + hspec-hedgehog HUnit mono-traversable QuickCheck refined refinery + string-conversions template-haskell text + ]; + testToolDepends = [ hspec-discover ]; description = "Constrained text newtypes"; license = lib.licenses.mit; }) {}; @@ -273646,6 +272560,8 @@ self: { libraryHaskellDepends = [ base bytestring text ]; description = "Functions for working with strings, including Text, ByteString, etc"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stringsearch" = callPackage @@ -273787,6 +272703,7 @@ self: { description = "Unofficial Stripe client"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stripe-http-client" = callPackage @@ -273862,8 +272779,6 @@ self: { ]; description = "Unofficial Stripe servant types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "stripe-signature" = callPackage @@ -273988,6 +272903,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Strongly typed paths in Haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "strongswan-sql" = callPackage @@ -274030,10 +272947,8 @@ self: { }: mkDerivation { pname = "strongweak"; - version = "0.3.1"; - sha256 = "1n46qw6hkdfbsfpyhpkalkw19fx152925hnpwmm2gr0rjzvwyn2p"; - revision = "2"; - editedCabalFile = "004as88cns3s5jk1c4467g0jdvqp6f9q9xf29cbx0x9d6b911v8x"; + version = "0.3.2"; + sha256 = "1xmqacfv4xqx1v7xdiflmc4am9366jhpdv1r7hldmh1ihw7jkfc3"; libraryHaskellDepends = [ base either prettyprinter refined vector vector-sized ]; @@ -274044,8 +272959,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Convert between strong and weak representations of types"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "strptime" = callPackage @@ -274193,8 +273106,10 @@ self: { ]; description = "Structured editing Emacs mode for Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "structured-haskell-mode"; maintainers = [ lib.maintainers.peti ]; + broken = true; }) {}; "structured-mongoDB" = callPackage @@ -274405,7 +273320,7 @@ self: { "stylish-haskell" = callPackage ({ mkDerivation, aeson, base, bytestring, Cabal, containers - , directory, file-embed, filepath, ghc-lib-parser + , directory, file-embed, filepath, ghc, ghc-boot, ghc-boot-th , ghc-lib-parser-ex, HsYAML, HsYAML-aeson, HUnit, mtl , optparse-applicative, random, regex-tdfa, strict, syb , test-framework, test-framework-hunit, text @@ -274418,18 +273333,19 @@ self: { isExecutable = true; libraryHaskellDepends = [ aeson base bytestring Cabal containers directory file-embed - filepath ghc-lib-parser ghc-lib-parser-ex HsYAML HsYAML-aeson mtl - regex-tdfa syb text + filepath ghc ghc-boot ghc-boot-th ghc-lib-parser-ex HsYAML + HsYAML-aeson mtl regex-tdfa syb text ]; executableHaskellDepends = [ aeson base bytestring Cabal containers directory file-embed - filepath ghc-lib-parser ghc-lib-parser-ex HsYAML HsYAML-aeson mtl - optparse-applicative regex-tdfa strict syb text + filepath ghc ghc-boot ghc-boot-th ghc-lib-parser-ex HsYAML + HsYAML-aeson mtl optparse-applicative regex-tdfa strict syb text ]; testHaskellDepends = [ aeson base bytestring Cabal containers directory file-embed - filepath ghc-lib-parser ghc-lib-parser-ex HsYAML HsYAML-aeson HUnit - mtl random regex-tdfa syb test-framework test-framework-hunit text + filepath ghc ghc-boot ghc-boot-th ghc-lib-parser-ex HsYAML + HsYAML-aeson HUnit mtl random regex-tdfa syb test-framework + test-framework-hunit text ]; description = "Haskell code prettifier"; license = lib.licenses.bsd3; @@ -274655,8 +273571,6 @@ self: { libraryHaskellDepends = [ base ]; description = "Allows to split lists into sublists with some patterns by quantity"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "submark" = callPackage @@ -274678,7 +273592,9 @@ self: { ]; description = "Extract a part from CommonMark/Markdown docs"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "submark"; + broken = true; }) {}; "subnet" = callPackage @@ -274973,6 +273889,8 @@ self: { testHaskellDepends = [ base hspec template-haskell ]; description = "Library for reducing the boilerplate involved with sum types"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "summer" = callPackage @@ -274985,6 +273903,8 @@ self: { testHaskellDepends = [ base ]; description = "An implementation of extensible products and sums"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "summoner" = callPackage @@ -275054,6 +273974,7 @@ self: { description = "A Haskell interface to SUMP-compatible logic analyzers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sundown" = callPackage @@ -275457,7 +274378,6 @@ self: { libraryHaskellDepends = [ base supply-chain-core ]; description = "Composable request-response pipelines"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "supply-chain-core" = callPackage @@ -275470,8 +274390,6 @@ self: { testHaskellDepends = [ base tasty tasty-hedgehog tasty-hunit ]; description = "Composable request-response pipelines"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "surjective" = callPackage @@ -275613,7 +274531,9 @@ self: { executableToolDepends = [ alex happy ]; description = "SystemVerilog to Verilog conversion"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "sv2v"; + broken = true; }) {}; "svfactor" = callPackage @@ -275681,8 +274601,8 @@ self: { ({ mkDerivation, base, blaze-markup, blaze-svg, directory, text }: mkDerivation { pname = "svg-icons"; - version = "2.5.0.1"; - sha256 = "0iwrs53n6f4l2fqybamghbk5ha1w8vspiha6cnjx49hzljsjz738"; + version = "2.6.0.0"; + sha256 = "13vsyv1bnxp45mllfrai09n4f5a131l8v77jbf2vy4f0wzmpswpm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -275795,7 +274715,9 @@ self: { ]; description = "A tool to prune unused symbols from icon SVG files"; license = lib.licenses.gpl3Plus; + hydraPlatforms = lib.platforms.none; mainProgram = "svgsym"; + broken = true; }) {}; "svgutils" = callPackage @@ -276349,6 +275271,7 @@ self: { description = "A modern testing framework for Haskell with good defaults and advanced testing features"; license = "unknown"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sydtest-aeson" = callPackage @@ -276662,12 +275585,12 @@ self: { }: mkDerivation { pname = "sydtest-webdriver"; - version = "0.0.0.0"; - sha256 = "030qv68sb075lqwz449yvliwg356ggn3ab90zcad6hc6hyz8x3vp"; + version = "0.0.0.1"; + sha256 = "1rf12cg494z302bd7yanylzayakqj8xwbj8blb0f512wvfy63cia"; libraryHaskellDepends = [ - aeson base http-client http-types monad-control mtl network - network-uri path path-io port-utils sydtest sydtest-typed-process - sydtest-wai transformers-base typed-process webdriver + aeson base http-client monad-control mtl network network-uri path + path-io port-utils sydtest sydtest-typed-process sydtest-wai + transformers-base typed-process webdriver ]; testHaskellDepends = [ base http-types network-uri sydtest sydtest-wai wai @@ -277019,8 +275942,6 @@ self: { ]; description = "Streaming support through pipes for symantic-http"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "symantic-http-server" = callPackage @@ -277636,7 +276557,6 @@ self: { description = "Audio signal processing coded in Haskell"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "synthesizer-alsa" = callPackage @@ -277660,6 +276580,7 @@ self: { description = "Control synthesizer effects via ALSA/MIDI"; license = lib.licenses.gpl3Only; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-core" = callPackage @@ -277694,6 +276615,7 @@ self: { ]; description = "Audio signal processing coded in Haskell: Low level part"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-dimensional" = callPackage @@ -277714,6 +276636,7 @@ self: { ]; description = "Audio signal processing with static physical dimensions"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-filter" = callPackage @@ -277730,6 +276653,7 @@ self: { ]; description = "Audio signal processing coded in Haskell: Filter networks"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-inference" = callPackage @@ -277808,6 +276732,7 @@ self: { ]; description = "Render audio signals from MIDI files or realtime messages"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "sys-auth-smbclient" = callPackage @@ -278410,7 +277335,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "tableaux.cgi"; - broken = true; }) {}; "tables" = callPackage @@ -278627,6 +277551,8 @@ self: { ]; description = "alternative package for processing of tag soups"; license = "GPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tagged" = callPackage @@ -278986,6 +277912,7 @@ self: { ]; description = "Black magic tagsoup"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "tagstew"; }) {}; @@ -279651,7 +278578,9 @@ self: { testToolDepends = [ tasty-discover ]; description = "A command-line kanban board/task manager"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "taskell"; + broken = true; }) {}; "taskpool" = callPackage @@ -279679,8 +278608,8 @@ self: { }: mkDerivation { pname = "taskwarrior"; - version = "0.6.0.3"; - sha256 = "177ylpifmij5lld5xqy8fpfcm5w8ng2fh5hckr3m5z638kk3q10z"; + version = "0.6.0.4"; + sha256 = "0m6h0ra868n7azxdj00sbhv2i9r5wr5rs10cyrzda7ss5n94aq8v"; libraryHaskellDepends = [ aeson base bytestring containers process random text time uuid ]; @@ -279711,6 +278640,23 @@ self: { license = lib.licenses.mit; }) {}; + "tasty_1_4_3" = callPackage + ({ mkDerivation, ansi-terminal, base, containers + , optparse-applicative, stm, tagged, transformers, unix + }: + mkDerivation { + pname = "tasty"; + version = "1.4.3"; + sha256 = "006bf4gyc30i2gvb17hj1mzrh1kwnwf7l050x3f72wi6c2axl87l"; + libraryHaskellDepends = [ + ansi-terminal base containers optparse-applicative stm tagged + transformers unix + ]; + description = "Modern and extensible testing framework"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "tasty-ant-xml" = callPackage ({ mkDerivation, base, containers, directory, filepath , generic-deriving, ghc-prim, mtl, stm, tagged, tasty, transformers @@ -279760,8 +278706,8 @@ self: { }: mkDerivation { pname = "tasty-autocollect"; - version = "0.3.1.0"; - sha256 = "0cvg7010hxrixpz013fb8ky5jgvvqf3l8x8kiwj0b3a31v8lk82d"; + version = "0.3.2.0"; + sha256 = "1f2z08zclnz8kvxs67a1r1qfdb2j8nfjnvsj4434sl59inl6s9vx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -279837,53 +278783,41 @@ self: { ]; description = "Check multiple items during a tasty test"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; }) {}; "tasty-dejafu" = callPackage ({ mkDerivation, base, dejafu, random, tagged, tasty }: mkDerivation { pname = "tasty-dejafu"; - version = "2.0.0.9"; - sha256 = "0cqm88aihaf2y25m129r4dg80a7h9q1gj6pjbg1yd6wb2lxd6zga"; - libraryHaskellDepends = [ base dejafu random tagged tasty ]; - description = "Deja Fu support for the Tasty test framework"; - license = lib.licenses.mit; - }) {}; - - "tasty-dejafu_2_1_0_0" = callPackage - ({ mkDerivation, base, dejafu, random, tagged, tasty }: - mkDerivation { - pname = "tasty-dejafu"; version = "2.1.0.0"; sha256 = "0pj7w81kcvbdk9fv10gwmjfivpa6a9m1ldvr9ck484lnb9684a9s"; libraryHaskellDepends = [ base dejafu random tagged tasty ]; description = "Deja Fu support for the Tasty test framework"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "tasty-discover" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, filepath - , Glob, hedgehog, hspec, hspec-core, tasty, tasty-golden - , tasty-hedgehog, tasty-hspec, tasty-hunit, tasty-quickcheck - , tasty-smallcheck + ({ mkDerivation, base, containers, directory, filepath, Glob + , hedgehog, tasty, tasty-hedgehog, tasty-hspec, tasty-hunit + , tasty-quickcheck, tasty-smallcheck }: mkDerivation { pname = "tasty-discover"; - version = "4.2.4"; - sha256 = "1v6ndsvz9f04gv3m41a2yqprpa7xz8d00vkws25a9n7b7h3wvj4x"; + version = "4.2.2"; + sha256 = "1j95njl3ml7cfxnwv0i17ijca84fgyrjs2cfw4g5yh1m4x2zvg34"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base containers directory filepath Glob tasty + base containers directory filepath Glob ]; executableHaskellDepends = [ base containers directory filepath Glob ]; testHaskellDepends = [ - base bytestring containers directory filepath Glob hedgehog hspec - hspec-core tasty tasty-golden tasty-hedgehog tasty-hspec - tasty-hunit tasty-quickcheck tasty-smallcheck + base containers directory filepath Glob hedgehog tasty + tasty-hedgehog tasty-hspec tasty-hunit tasty-quickcheck + tasty-smallcheck ]; description = "Test discovery for the tasty framework"; license = lib.licenses.mit; @@ -280040,10 +278974,8 @@ self: { }: mkDerivation { pname = "tasty-hedgehog"; - version = "1.1.0.0"; - sha256 = "0cy49z8n124xh2ra2482vfy5if1n6d9lbdjma2zg1mxfj0k0zyfb"; - revision = "3"; - editedCabalFile = "1i7i2yws3bdmsg2hl7dh65zvh9sna3gnlv0l4m1sqqdx5dji1a3w"; + version = "1.3.1.0"; + sha256 = "1iq452mvd9wc9pfmjsmm848jwp3cvsk1faf2mlr21vcs0yaxvq3m"; libraryHaskellDepends = [ base hedgehog tagged tasty ]; testHaskellDepends = [ base hedgehog tasty tasty-expected-failure @@ -280292,6 +279224,8 @@ self: { ]; description = "JSON reporter for the tasty testing framework"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tasty-kat" = callPackage @@ -280563,7 +279497,6 @@ self: { doHaddock = false; description = "Tests defined by Search Using Golden Answer References"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; }) {}; "tasty-tap" = callPackage @@ -280750,7 +279683,6 @@ self: { description = "tcache using Amazon Web Services as default persistence mechanism"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tccli" = callPackage @@ -280902,6 +279834,7 @@ self: { description = "Test framework wrapper"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tdigest" = callPackage @@ -281125,6 +280058,7 @@ self: { ]; description = "Bleeding edge prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "technique" = callPackage @@ -281206,6 +280140,7 @@ self: { description = "Telegram Bot API binding"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "telegram" = callPackage @@ -281283,31 +280218,6 @@ self: { , filepath, hashable, http-api-data, http-client, http-client-tls , monad-control, mtl, pretty-show, profunctors, servant , servant-client, servant-multipart-api, servant-multipart-client - , split, stm, template-haskell, text, time, transformers - , unordered-containers - }: - mkDerivation { - pname = "telegram-bot-simple"; - version = "0.4.5"; - sha256 = "0c2j0dmx6j15c8csmv64zc3m7qnbvnf5aqan7qjc8d5yfzbxr4nr"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty base bytestring cron filepath hashable - http-api-data http-client http-client-tls monad-control mtl - pretty-show profunctors servant servant-client - servant-multipart-api servant-multipart-client split stm - template-haskell text time transformers unordered-containers - ]; - description = "Easy to use library for building Telegram bots"; - license = lib.licenses.bsd3; - }) {}; - - "telegram-bot-simple_0_6" = callPackage - ({ mkDerivation, aeson, aeson-pretty, base, bytestring, cron - , filepath, hashable, http-api-data, http-client, http-client-tls - , monad-control, mtl, pretty-show, profunctors, servant - , servant-client, servant-multipart-api, servant-multipart-client , servant-server, split, stm, template-haskell, text, time , transformers, unordered-containers, warp, warp-tls }: @@ -281327,7 +280237,6 @@ self: { ]; description = "Easy to use library for building Telegram bots"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "telegram-raw-api" = callPackage @@ -281757,7 +280666,6 @@ self: { description = "library to make electronic music, brings together temporal-music-notation and csound-expression packages"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "temporal-media" = callPackage @@ -282202,6 +281110,7 @@ self: { ]; description = "Encoder and decoder for the TensorFlow \"TFRecords\" format"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "tensorflow-records-conduit" = callPackage @@ -282218,6 +281127,7 @@ self: { ]; description = "Conduit wrappers for TensorFlow.Records."; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "tensorflow-test" = callPackage @@ -282265,35 +281175,17 @@ self: { testHaskellDepends = [ base containers HUnit QuickCheck ]; description = "Term Rewriting Library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "termbox" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "termbox"; - version = "0.3.0"; - sha256 = "1vi2ssylwvc6xqnhpnvc9q9c70glbf6s63rmyblc53g4qra2wkah"; - revision = "1"; - editedCabalFile = "1d0sv2ycizpy0fsn0v4n2bbziyr56y2md8qnqmr0bx1rkriz67li"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base ]; - description = "termbox bindings"; - license = lib.licenses.bsd3; - }) {}; - - "termbox_1_1_0" = callPackage ({ mkDerivation, base, termbox-bindings-hs }: mkDerivation { pname = "termbox"; - version = "1.1.0"; - sha256 = "0m2g3w0a0kc0a692r2mdflp1q96nycpwg80zf6lsb0z1xqvycypy"; + version = "1.1.0.1"; + sha256 = "0fwixvyf80gkj1l8r4v4vrmpilz0f02hqhpx0f93rbwaaadxqrd3"; libraryHaskellDepends = [ base termbox-bindings-hs ]; description = "termbox"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "termbox-banana" = callPackage @@ -282305,8 +281197,6 @@ self: { libraryHaskellDepends = [ base reactive-banana termbox ]; description = "termbox + reactive-banana"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "termbox-bindings" = callPackage @@ -282360,8 +281250,6 @@ self: { libraryHaskellDepends = [ base ki termbox ]; description = "termbox + The Elm Architecture"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "termcolor" = callPackage @@ -282519,47 +281407,6 @@ self: { }: mkDerivation { pname = "termonad"; - version = "4.2.0.1"; - sha256 = "0qsjgx3742z21qg1cbw2mp8gaqvb2rnp4ds90s82vf9s1ps2dkqm"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - adjunctions aeson base classy-prelude colour constraints containers - data-default directory distributive dyre file-embed filepath - focuslist gi-gdk gi-gio gi-glib gi-gtk gi-pango gi-vte - haskell-gi-base inline-c lens mono-traversable pretty-simple - QuickCheck text transformers unordered-containers xml-conduit - xml-html-qq yaml - ]; - libraryPkgconfigDepends = [ gtk3 pcre2 vte_291 ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base doctest genvalidity-containers genvalidity-hspec hedgehog lens - QuickCheck tasty tasty-hedgehog tasty-hspec template-haskell - ]; - description = "Terminal emulator configurable in Haskell"; - license = lib.licenses.bsd3; - badPlatforms = lib.platforms.darwin; - mainProgram = "termonad"; - maintainers = [ lib.maintainers.cdepillabout ]; - }) {inherit (pkgs) gtk3; inherit (pkgs) pcre2; - vte_291 = pkgs.vte;}; - - "termonad_4_4_0_0" = callPackage - ({ mkDerivation, adjunctions, aeson, base, Cabal, cabal-doctest - , classy-prelude, colour, constraints, containers, data-default - , directory, distributive, doctest, dyre, file-embed, filepath - , focuslist, genvalidity-containers, genvalidity-hspec, gi-gdk - , gi-gio, gi-glib, gi-gtk, gi-pango, gi-vte, gtk3, haskell-gi-base - , hedgehog, inline-c, lens, mono-traversable, pcre2, pretty-simple - , QuickCheck, tasty, tasty-hedgehog, tasty-hspec, template-haskell - , text, transformers, unordered-containers, vte_291, xml-conduit - , xml-html-qq, yaml - }: - mkDerivation { - pname = "termonad"; version = "4.4.0.0"; sha256 = "0xyb0z0k16mpsr5nc7a4k7w04k6skfwja25f5w329w1djrkvqfyx"; isLibrary = true; @@ -282583,7 +281430,6 @@ self: { description = "Terminal emulator configurable in Haskell"; license = lib.licenses.bsd3; badPlatforms = lib.platforms.darwin; - hydraPlatforms = lib.platforms.none; mainProgram = "termonad"; maintainers = [ lib.maintainers.cdepillabout ]; }) {inherit (pkgs) gtk3; inherit (pkgs) pcre2; @@ -283458,28 +282304,6 @@ self: { "texmath" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath - , mtl, pandoc-types, parsec, process, split, syb, temporary, text - , utf8-string, xml - }: - mkDerivation { - pname = "texmath"; - version = "0.12.4"; - sha256 = "1k7hh75jzgysh7b7jkvy4w07dbkvm5fcc5hkkixz6xzrp2fvnws3"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base containers mtl pandoc-types parsec split syb text xml - ]; - testHaskellDepends = [ - base bytestring directory filepath process temporary text - utf8-string xml - ]; - description = "Conversion between math formats"; - license = lib.licenses.gpl2Only; - }) {}; - - "texmath_0_12_5_4" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, filepath , mtl, pandoc-types, parsec, pretty-show, split, syb, tagged, tasty , tasty-golden, text, xml }: @@ -283498,7 +282322,6 @@ self: { ]; description = "Conversion between math formats"; license = lib.licenses.gpl2Only; - hydraPlatforms = lib.platforms.none; }) {}; "texrunner" = callPackage @@ -283586,19 +282409,6 @@ self: { }) {}; "text-ansi" = callPackage - ({ mkDerivation, base, text }: - mkDerivation { - pname = "text-ansi"; - version = "0.1.1"; - sha256 = "1vcrsg7v8n6znh1pd9kbm20bc6dg3zijd3xjdjljadf15vfkd5f6"; - revision = "4"; - editedCabalFile = "0x7d9fgh2mvr0phb20s76k5wl6pl59r667jhkaqfbf88xz44j04k"; - libraryHaskellDepends = [ base text ]; - description = "Text styling for ANSI terminals"; - license = lib.licenses.bsd3; - }) {}; - - "text-ansi_0_2_1" = callPackage ({ mkDerivation, base, text, text-builder }: mkDerivation { pname = "text-ansi"; @@ -283607,7 +282417,6 @@ self: { libraryHaskellDepends = [ base text text-builder ]; description = "Text styling for ANSI terminals"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-ascii" = callPackage @@ -283641,27 +282450,6 @@ self: { }) {}; "text-builder" = callPackage - ({ mkDerivation, base-prelude, bytestring, criterion, QuickCheck - , quickcheck-instances, rerebase, tasty, tasty-hunit - , tasty-quickcheck, text, text-builder-dev - }: - mkDerivation { - pname = "text-builder"; - version = "0.6.6.5"; - sha256 = "145m3v5fpisz04dwd3pwnak8mvsnc60rw92br4q946kymfifb7kj"; - libraryHaskellDepends = [ - base-prelude bytestring text text-builder-dev - ]; - testHaskellDepends = [ - QuickCheck quickcheck-instances rerebase tasty tasty-hunit - tasty-quickcheck - ]; - benchmarkHaskellDepends = [ criterion rerebase ]; - description = "An efficient strict text builder"; - license = lib.licenses.mit; - }) {}; - - "text-builder_0_6_7" = callPackage ({ mkDerivation, base, bytestring, criterion, QuickCheck , quickcheck-instances, rerebase, tasty, tasty-hunit , tasty-quickcheck, text, text-builder-dev @@ -283678,34 +282466,10 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "An efficient strict text builder"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "text-builder-dev" = callPackage ({ mkDerivation, base, bytestring, criterion, deferred-folds - , QuickCheck, quickcheck-instances, rerebase, split, tasty - , tasty-hunit, tasty-quickcheck, text, text-conversions, tostring - , transformers - }: - mkDerivation { - pname = "text-builder-dev"; - version = "0.2.1"; - sha256 = "0jrzs4dcm2zq5gsn4lbmrasrsk31rs0z6n3vgs514x7p3fdv6lpj"; - libraryHaskellDepends = [ - base bytestring deferred-folds split text text-conversions tostring - transformers - ]; - testHaskellDepends = [ - QuickCheck quickcheck-instances rerebase tasty tasty-hunit - tasty-quickcheck - ]; - benchmarkHaskellDepends = [ criterion rerebase ]; - description = "Edge of developments for \"text-builder\""; - license = lib.licenses.mit; - }) {}; - - "text-builder-dev_0_3_3" = callPackage - ({ mkDerivation, base, bytestring, criterion, deferred-folds , isomorphism-class, QuickCheck, quickcheck-instances, rerebase , split, tasty, tasty-hunit, tasty-quickcheck, text, transformers }: @@ -283724,7 +282488,6 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "Edge of developments for \"text-builder\""; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "text-builder-linear" = callPackage @@ -283745,18 +282508,17 @@ self: { }) {}; "text-compression" = callPackage - ({ mkDerivation, base, bytestring, containers, massiv, mtl, text }: + ({ mkDerivation, base, bytestring, containers, mtl, parallel, text + }: mkDerivation { pname = "text-compression"; - version = "0.1.0.7"; - sha256 = "0sxzcdfx2v0870w130vkw6iyg5w0k8vvkz7fj3b50kr4wl9wypb4"; + version = "0.1.0.25"; + sha256 = "1lppagp2xkgn2hib71jp0p4jwl0ps415cnvjlhxfhfm0zp3pm6ys"; libraryHaskellDepends = [ - base bytestring containers massiv mtl text + base bytestring containers mtl parallel text ]; description = "A text compression library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "text-containers" = callPackage @@ -283840,10 +282602,10 @@ self: { }: mkDerivation { pname = "text-format"; - version = "0.3.2"; - sha256 = "1qxs8xyjk8nzzzam62lqqml9s0p08m749jri0lfaa844mnw3frij"; - revision = "2"; - editedCabalFile = "05findgw709h930wshaq514maxarjyjhsam6pkyzq83iz1yc2gra"; + version = "0.3.2.1"; + sha256 = "1q4ijzd8fsc4g2fi53448hhjg0wlgy9kdc1226kkqrnq1dg9nlm9"; + revision = "1"; + editedCabalFile = "15xiwzsfgwvhph9b2r8rkwpzfgymqqjm7d5jjjqzyxjqj73pdami"; libraryHaskellDepends = [ array base double-conversion ghc-prim integer-gmp old-locale text time transformers @@ -283911,28 +282673,6 @@ self: { "text-icu" = callPackage ({ mkDerivation, array, base, bytestring, deepseq, directory - , ghc-prim, HUnit, icu, QuickCheck, random, test-framework - , test-framework-hunit, test-framework-quickcheck2, text - }: - mkDerivation { - pname = "text-icu"; - version = "0.7.1.0"; - sha256 = "0s9gcd9lcrhk92ydhizyk0vbpf542ipc4hj60fa02b2g2x9q93ij"; - revision = "2"; - editedCabalFile = "0s0n9l682ffigfqbzb1adw63pj9iyvalv45kp9kxqwbj5yibblbc"; - libraryHaskellDepends = [ base bytestring deepseq text ]; - librarySystemDepends = [ icu ]; - testHaskellDepends = [ - array base bytestring deepseq directory ghc-prim HUnit QuickCheck - random test-framework test-framework-hunit - test-framework-quickcheck2 text - ]; - description = "Bindings to the ICU library"; - license = lib.licenses.bsd3; - }) {inherit (pkgs) icu;}; - - "text-icu_0_8_0_2" = callPackage - ({ mkDerivation, array, base, bytestring, deepseq, directory , ghc-prim, HUnit, icu, icu-i18n, QuickCheck, random , test-framework, test-framework-hunit, test-framework-quickcheck2 , text, time @@ -283951,7 +282691,6 @@ self: { ]; description = "Bindings to the ICU library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) icu; icu-i18n = null;}; "text-icu-normalized" = callPackage @@ -283995,6 +282734,8 @@ self: { ]; description = "ICU transliteration"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) icu;}; "text-json-qq" = callPackage @@ -284078,8 +282819,6 @@ self: { ]; description = "Monadic parsing combinator library with attention to locations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "text-loc" = callPackage @@ -284265,8 +283004,8 @@ self: { }: mkDerivation { pname = "text-regex-replace"; - version = "0.1.1.4"; - sha256 = "19n7zwnrm4da8ifhwlqwrx969pni0njj5f69j30gp71fi9ihjgsb"; + version = "0.1.1.5"; + sha256 = "0jb45mn1szjdg2m46ig2mgd1yfvywpr566zwf0rmw60bmc4zdnhl"; libraryHaskellDepends = [ attoparsec base text text-icu ]; testHaskellDepends = [ base hspec QuickCheck smallcheck text text-icu @@ -284291,8 +283030,6 @@ self: { testHaskellDepends = [ base base-unicode-symbols hspec lens text ]; description = "Marking text regions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "text-register-machine" = callPackage @@ -284345,22 +283082,6 @@ self: { }: mkDerivation { pname = "text-rope"; - version = "0.1"; - sha256 = "0dfn8hjnw38zh9nw7wy2jfyg0acg9jpfhngj65aczb9qxv6yj3hv"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base deepseq text vector ]; - testHaskellDepends = [ base tasty tasty-quickcheck text ]; - benchmarkHaskellDepends = [ base random tasty-bench text ]; - description = "Text lines and ropes"; - license = lib.licenses.bsd3; - }) {}; - - "text-rope_0_2" = callPackage - ({ mkDerivation, base, deepseq, random, tasty, tasty-bench - , tasty-quickcheck, text, vector - }: - mkDerivation { - pname = "text-rope"; version = "0.2"; sha256 = "12z7radm15mlfz5nrpii2dkjkiis05a88x923jipbhwwbs2j4i5i"; enableSeparateDataOutput = true; @@ -284369,7 +283090,6 @@ self: { benchmarkHaskellDepends = [ base random tasty-bench text ]; description = "Text lines and ropes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-short" = callPackage @@ -284405,38 +283125,6 @@ self: { }: mkDerivation { pname = "text-show"; - version = "3.9.7"; - sha256 = "1zc47qh38jmg19fdki9isjcq4v115w2q61dnmxkypahhgiaqgkb3"; - revision = "1"; - editedCabalFile = "0dm0ziv02wcwlgzp58kfa4i05xbq9v82ay6kjnzrf0n3z3pdpxbm"; - libraryHaskellDepends = [ - array base base-compat-batteries bifunctors bytestring - bytestring-builder containers generic-deriving ghc-boot-th ghc-prim - template-haskell text th-abstraction th-lift transformers - transformers-compat - ]; - testHaskellDepends = [ - array base base-compat-batteries base-orphans bytestring - bytestring-builder deriving-compat generic-deriving ghc-prim hspec - QuickCheck quickcheck-instances template-haskell text transformers - transformers-compat - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ base criterion deepseq ghc-prim text ]; - description = "Efficient conversion of values into Text"; - license = lib.licenses.bsd3; - }) {}; - - "text-show_3_10" = callPackage - ({ mkDerivation, array, base, base-compat-batteries, base-orphans - , bifunctors, bytestring, bytestring-builder, containers, criterion - , deepseq, deriving-compat, generic-deriving, ghc-boot-th, ghc-prim - , hspec, hspec-discover, QuickCheck, quickcheck-instances - , template-haskell, text, th-abstraction, th-lift, transformers - , transformers-compat - }: - mkDerivation { - pname = "text-show"; version = "3.10"; sha256 = "1iq24lpy59c8wc62ss4bwsaks6wlcr73c8vdyd2xha2p4fswmfyf"; libraryHaskellDepends = [ @@ -284455,7 +283143,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ghc-prim text ]; description = "Efficient conversion of values into Text"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-show-instances" = callPackage @@ -284465,41 +283152,6 @@ self: { , pretty, QuickCheck, quickcheck-instances, random, scientific , semigroups, tagged, template-haskell, terminfo, text, text-short , text-show, th-orphans, time, transformers, transformers-compat - , unix, unordered-containers, vector, xhtml - }: - mkDerivation { - pname = "text-show-instances"; - version = "3.8.6"; - sha256 = "1jg1wsjnp6q68nsynwzw26s4akr0d9a4frd9dvnddalm2c6vdwaz"; - revision = "1"; - editedCabalFile = "1xikz6yviivafckm6ri0abm60z2qkgmqkc7gnjxhicfhbnnqpbbi"; - libraryHaskellDepends = [ - base base-compat-batteries bifunctors binary containers directory - ghc-boot-th haskeline hpc old-locale old-time pretty random - scientific semigroups tagged template-haskell terminfo text - text-short text-show time transformers transformers-compat unix - unordered-containers vector xhtml - ]; - testHaskellDepends = [ - base base-compat-batteries bifunctors binary containers directory - generic-deriving ghc-boot-th ghc-prim haskeline hpc hspec - old-locale old-time pretty QuickCheck quickcheck-instances random - scientific tagged template-haskell terminfo text-short text-show - th-orphans time transformers transformers-compat unix - unordered-containers vector xhtml - ]; - testToolDepends = [ hspec-discover ]; - description = "Additional instances for text-show"; - license = lib.licenses.bsd3; - }) {}; - - "text-show-instances_3_9_2" = callPackage - ({ mkDerivation, base, base-compat-batteries, bifunctors, binary - , containers, directory, generic-deriving, ghc-boot-th, ghc-prim - , haskeline, hpc, hspec, hspec-discover, old-locale, old-time - , pretty, QuickCheck, quickcheck-instances, random, scientific - , semigroups, tagged, template-haskell, terminfo, text, text-short - , text-show, th-orphans, time, transformers, transformers-compat , unix, unordered-containers, uuid-types, vector, xhtml }: mkDerivation { @@ -284524,7 +283176,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Additional instances for text-show"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-stream-decode" = callPackage @@ -284595,6 +283246,8 @@ self: { ]; description = "UTF-7 encoding/decoding for Data.Text"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "text-utf8" = callPackage @@ -284669,19 +283322,6 @@ self: { ({ mkDerivation, base, deepseq, hspec, QuickCheck, text, vector }: mkDerivation { pname = "text-zipper"; - version = "0.11"; - sha256 = "07l1pyx93gv95cn1wh1di129axhm9sqsn4znykliacv60ld854ys"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base deepseq text vector ]; - testHaskellDepends = [ base hspec QuickCheck text ]; - description = "A text editor zipper library"; - license = lib.licenses.bsd3; - }) {}; - - "text-zipper_0_12" = callPackage - ({ mkDerivation, base, deepseq, hspec, QuickCheck, text, vector }: - mkDerivation { - pname = "text-zipper"; version = "0.12"; sha256 = "00k7d6qfznhp6l2ihw3pppkn580pwd7ac7wx9vidil4y9hjagaw6"; enableSeparateDataOutput = true; @@ -284689,7 +283329,6 @@ self: { testHaskellDepends = [ base hspec QuickCheck text ]; description = "A text editor zipper library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-zipper-monad" = callPackage @@ -285032,10 +283671,8 @@ self: { }: mkDerivation { pname = "th-desugar"; - version = "1.12"; - sha256 = "1bp47jpif299kbm27zhjaw1nhl12daa09vsc8f0jracq0jhxi3iv"; - revision = "1"; - editedCabalFile = "1dh5j70f5gxfj6kyw7zc9hxv21ilpj408r9chixngxf82b30ic69"; + version = "1.13.1"; + sha256 = "03k2kfbzfc87kibzbpp3s1l5xb0ww2vvwj9ngh0qapxm28a01rz3"; libraryHaskellDepends = [ base containers ghc-prim mtl ordered-containers syb template-haskell th-abstraction th-lift th-orphans @@ -285261,8 +283898,8 @@ self: { }: mkDerivation { pname = "th-lego"; - version = "0.3.0.1"; - sha256 = "092q1mg38lkam0bcw4i1m14563j8z9l9hcqjp0sfsclkylamh23c"; + version = "0.3.0.2"; + sha256 = "1w7z6g0sfn23yaqjpylnf1kpwyyf9ka17f0bqvlxcd3b739ajg8z"; libraryHaskellDepends = [ base template-haskell template-haskell-compat-v0208 text ]; @@ -285451,27 +284088,8 @@ self: { }: mkDerivation { pname = "th-test-utils"; - version = "1.1.1"; - sha256 = "03qpszfhb58nmm673zhbkvsmw1ynjr2h19qpggyay2fk5zgq7n3q"; - libraryHaskellDepends = [ - base template-haskell th-orphans transformers - ]; - testHaskellDepends = [ - base bytestring tasty tasty-golden tasty-hunit template-haskell - th-orphans transformers - ]; - description = "Utility functions for testing Template Haskell code"; - license = lib.licenses.bsd3; - }) {}; - - "th-test-utils_1_2_0" = callPackage - ({ mkDerivation, base, bytestring, tasty, tasty-golden, tasty-hunit - , template-haskell, th-orphans, transformers - }: - mkDerivation { - pname = "th-test-utils"; - version = "1.2.0"; - sha256 = "0p5j5mgjqwvkw0rcxlfkcflyqdz972ls70lprn38yjb32v3l8ncf"; + version = "1.2.1"; + sha256 = "1vk5fj66w7smq4yc614ixh7s78n3djggpzcxmakyxfz01vz20gay"; libraryHaskellDepends = [ base template-haskell th-orphans transformers ]; @@ -285481,7 +284099,6 @@ self: { ]; description = "Utility functions for testing Template Haskell code"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "th-to-exp" = callPackage @@ -285620,7 +284237,6 @@ self: { ]; description = "Minimalistic actor library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "themoviedb" = callPackage @@ -285929,8 +284545,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A simplified implementation of Erlang/OTP like supervisor over thread"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "thread-utils-context" = callPackage @@ -285998,6 +284612,7 @@ self: { ]; description = "Manage concurrently operating threads without having to spark them"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "threadmanager" = callPackage @@ -286096,7 +284711,9 @@ self: { ]; description = "A graphical tool for profiling parallel Haskell programs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "threadscope"; + broken = true; }) {}; "threefish" = callPackage @@ -286144,10 +284761,8 @@ self: { }: mkDerivation { pname = "threepenny-gui"; - version = "0.9.1.0"; - sha256 = "00sjkfa9qfnnwqfdw68yb8hq6nm1y5qv9896rzn5aachr7mlfpx2"; - revision = "7"; - editedCabalFile = "0lf7w1kxnd0wwqwrq2svbki1cbzwl9ggvfl1bvxvhg1qrw0avqbd"; + version = "0.9.4.0"; + sha256 = "08jqa01pp6b300ic0xcn687i0a0kvz76bgym3dchk9n75m6hvc4f"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -286192,7 +284807,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "threepenny-flexbox-exe"; - broken = true; }) {}; "thrift" = callPackage @@ -286327,6 +284941,8 @@ self: { libraryHaskellDepends = [ base bytestring gd ]; description = "generate thumbnail image"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "thumbnail-plus" = callPackage @@ -286399,8 +285015,6 @@ self: { ]; description = "A faster time library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tianbar" = callPackage @@ -286511,7 +285125,9 @@ self: { testHaskellDepends = [ base QuickCheck text ]; description = "A basic implementation of a personal ticket management system"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "ticket-manager"; + broken = true; }) {}; "tickle" = callPackage @@ -286549,34 +285165,6 @@ self: { }) {}; "tidal" = callPackage - ({ mkDerivation, async, base, bifunctors, bytestring, clock, colour - , containers, criterion, deepseq, exceptions, hint, hosc, microspec - , mtl, network, parsec, primitive, random, text, transformers - , weigh - }: - mkDerivation { - pname = "tidal"; - version = "1.7.10"; - sha256 = "0vfymixr66sj6zsadkbcx0yx722f2d3q6cic4c91cswxssfqfrhc"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base bifunctors bytestring clock colour containers deepseq - exceptions hosc mtl network parsec primitive random text - transformers - ]; - executableHaskellDepends = [ async base exceptions hint ]; - testHaskellDepends = [ - base containers deepseq hosc microspec parsec - ]; - benchmarkHaskellDepends = [ base criterion weigh ]; - description = "Pattern language for improvised music"; - license = lib.licenses.gpl3Only; - mainProgram = "tidal"; - }) {}; - - "tidal_1_9_2" = callPackage ({ mkDerivation, base, bytestring, clock, colour, containers , criterion, deepseq, exceptions, hosc, microspec, mtl, network , parsec, primitive, random, text, tidal-link, transformers, weigh @@ -286596,7 +285184,6 @@ self: { benchmarkHaskellDepends = [ base criterion weigh ]; description = "Pattern language for improvised music"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "tidal-link" = callPackage @@ -286645,6 +285232,7 @@ self: { description = "Serial support for tidal"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tidal-vis" = callPackage @@ -286712,7 +285300,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "tiger"; - broken = true; }) {}; "tight-apply" = callPackage @@ -286781,7 +285368,9 @@ self: { ]; description = "A program for generating LaTeX code of string diagrams"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "tikzsd"; + broken = true; }) {}; "tile" = callPackage @@ -286892,6 +285481,7 @@ self: { libraryHaskellDepends = [ base time ]; description = "A library for time domains and durations"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.turion ]; }) {}; "time-extras" = callPackage @@ -287467,7 +286057,9 @@ self: { ]; description = "A tool for visualizing time series from log files"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "tplot"; + broken = true; }) {}; "timeprint" = callPackage @@ -287483,20 +286075,6 @@ self: { }) {}; "timer-wheel" = callPackage - ({ mkDerivation, atomic-primops, base, psqueues, vector }: - mkDerivation { - pname = "timer-wheel"; - version = "0.3.0"; - sha256 = "16v663mcsj0h17x4jriq50dps3m3f8wqcsm19kl48vrs7f4mp07s"; - revision = "3"; - editedCabalFile = "1lgavl752g968ki042dxha8d28dm8zfs8mzm5zl8xk4p0wi1iwdv"; - libraryHaskellDepends = [ atomic-primops base psqueues vector ]; - testHaskellDepends = [ base ]; - description = "A timer wheel"; - license = lib.licenses.bsd3; - }) {}; - - "timer-wheel_0_4_0_1" = callPackage ({ mkDerivation, array, atomic-primops, base, ki, psqueues }: mkDerivation { pname = "timer-wheel"; @@ -287506,7 +286084,6 @@ self: { testHaskellDepends = [ base ]; description = "A timer wheel"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "timerep" = callPackage @@ -287515,26 +286092,6 @@ self: { }: mkDerivation { pname = "timerep"; - version = "2.0.1.0"; - sha256 = "1l67gbfjydq0xapry5k9pwzxmp6z7ixzyvwshnszryspcckagxif"; - revision = "1"; - editedCabalFile = "1sk6bd6d0qvfbhn8b8na2m2z784gcbmxmgm1i6xcfbb8bls7bx7q"; - libraryHaskellDepends = [ - attoparsec base monoid-subclasses text time - ]; - testHaskellDepends = [ - base QuickCheck tasty tasty-hunit tasty-quickcheck text time - ]; - description = "Parse and display time according to some RFCs (RFC3339, RFC2822, RFC822)"; - license = lib.licenses.bsd3; - }) {}; - - "timerep_2_1_0_0" = callPackage - ({ mkDerivation, attoparsec, base, monoid-subclasses, QuickCheck - , tasty, tasty-hunit, tasty-quickcheck, text, time - }: - mkDerivation { - pname = "timerep"; version = "2.1.0.0"; sha256 = "1qik0bg609657y12vlkiip4ry586bkwyfmy5wabnf1qc184zqzir"; libraryHaskellDepends = [ @@ -287545,7 +286102,6 @@ self: { ]; description = "Parse and display time according to some RFCs (RFC3339, RFC2822, RFC822)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "timers" = callPackage @@ -287567,10 +286123,8 @@ self: { ({ mkDerivation, base, hspec, QuickCheck }: mkDerivation { pname = "timers-tick"; - version = "0.5.0.1"; - sha256 = "1kv646l77bzjgs2v39axsi405zvapwks1vj4ff341r5agpwrfqlc"; - revision = "1"; - editedCabalFile = "1qsmzkm0k14z06czpbjgkbzb1liws3iass0rwsi5wp5i62jkhczs"; + version = "0.5.0.2"; + sha256 = "0jhzv5h5jwjgcskimfrvaiv5544czkyngxw9bsjdmxk0y1v698vr"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "tick based timers"; @@ -287850,7 +286404,6 @@ self: { license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; mainProgram = "tintin"; - broken = true; }) {}; "tiny-scheduler" = callPackage @@ -287880,6 +286433,7 @@ self: { description = "TinyMesh - communicating with auto-meshing sensor network"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tinyXml" = callPackage @@ -287949,6 +286503,8 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion ]; description = "Simplistic logging using fast-logger"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tinytemplate" = callPackage @@ -288426,31 +286982,6 @@ self: { "tlynx" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring , comonad, containers, data-default-class, elynx-tools, elynx-tree - , mwc-random, optparse-applicative, parallel, primitive, statistics - , text, transformers, vector - }: - mkDerivation { - pname = "tlynx"; - version = "0.6.1.1"; - sha256 = "1q59gfk9i4ghm5gyw104isn0f3ws73n12a9hv6xhs6c3rfl8spr9"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson async attoparsec base bytestring comonad containers - data-default-class elynx-tools elynx-tree mwc-random - optparse-applicative parallel primitive statistics text - transformers vector - ]; - executableHaskellDepends = [ base ]; - description = "Handle phylogenetic trees"; - license = lib.licenses.gpl3Plus; - mainProgram = "tlynx"; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "tlynx_0_7_0_1" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , comonad, containers, data-default-class, elynx-tools, elynx-tree , optparse-applicative, parallel, random, statistics, text , transformers, vector }: @@ -288468,7 +286999,6 @@ self: { executableHaskellDepends = [ base ]; description = "Handle phylogenetic trees"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "tlynx"; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -288550,8 +287080,8 @@ self: { }: mkDerivation { pname = "tmp-proc"; - version = "0.5.1.2"; - sha256 = "0fisalws4qz4y3dagmra4mxns6b5ljf3szf907kdf34v4lysf8j0"; + version = "0.5.1.3"; + sha256 = "050inff8y97bzf4ajnqrxgcblj0cq0khcp1y35vwbwgm3al2l21p"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -288599,8 +287129,8 @@ self: { }: mkDerivation { pname = "tmp-proc-postgres"; - version = "0.5.2.1"; - sha256 = "0vd8ag23brrbcgfsjpi5cg0fm5crlww8mmg2cpiyqhih370qivxr"; + version = "0.5.2.2"; + sha256 = "1h8c5rv4i85z173mx2d2bw2ipzwjs04lrlc45249l26f6p4nlr9p"; libraryHaskellDepends = [ base bytestring postgresql-simple text tmp-proc ]; @@ -288610,8 +287140,6 @@ self: { ]; description = "Shows how to run a PostgreSQL database as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmp-proc-rabbitmq" = callPackage @@ -288628,8 +287156,6 @@ self: { ]; description = "Shows how to run RabbitMQ as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmp-proc-redis" = callPackage @@ -288646,8 +287172,6 @@ self: { ]; description = "Shows how to run redis as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmp-proc-zipkin" = callPackage @@ -288666,8 +287190,6 @@ self: { ]; description = "Shows how to run redis as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmpl" = callPackage @@ -288807,13 +287329,11 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "todo"; - version = "0.2.0.2"; - sha256 = "1gh2jdrxph0x9cc03kk8xxjyicivwcqfs9qv2nfr7mn570cmjrmw"; + version = "0.2.0.3"; + sha256 = "1ilnslggrca8arjibgn44xh8m36ywwcbqi5h538h7cp669lnyxz9"; libraryHaskellDepends = [ base ]; - description = "A todo bottom"; + description = "A replacement for undefined that gives warnings"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "todos" = callPackage @@ -289133,8 +287653,6 @@ self: { libraryHaskellDepends = [ base OpenAL stm vector ]; description = "Easy to use library for audio programming"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "toml" = callPackage @@ -289172,19 +287690,18 @@ self: { }) {}; "toml-reader" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, deepseq - , directory, megaparsec, parser-combinators, process, tasty - , tasty-golden, tasty-hunit, text, time, unordered-containers - , vector + ({ mkDerivation, aeson, base, bytestring, containers, directory + , megaparsec, parser-combinators, process, tasty, tasty-golden + , tasty-hunit, text, time, unordered-containers, vector }: mkDerivation { pname = "toml-reader"; - version = "0.1.0.0"; - sha256 = "06gxp8pzh8cdrifg5n0mhlnrslrx7k235sz2ldpy60x7vz7qywv9"; - revision = "2"; - editedCabalFile = "0ga0nc2n3irk0iy7ih90vww1cyaydn5sz7bpk7bz21ncny3g9fyg"; + version = "0.2.0.0"; + sha256 = "0pajlx405cbb7c5bcq3r8hgqlmn16nqvraskplq9n9cc5xhw04xk"; + revision = "1"; + editedCabalFile = "0v03ssaa4kqa0i3wvl460028qhvlzfsqrqk6vbgcvsw6vxsnbh80"; libraryHaskellDepends = [ - base containers deepseq megaparsec parser-combinators text time + base containers megaparsec parser-combinators text time ]; testHaskellDepends = [ aeson base bytestring containers directory process tasty @@ -289213,8 +287730,6 @@ self: { ]; description = "Alternative parser for TOML values produced by the toml-reader package"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tomland" = callPackage @@ -289584,6 +288099,7 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "topkata"; + broken = true; }) {}; "topograph" = callPackage @@ -289704,6 +288220,8 @@ self: { ]; description = "Dense and sparse total maps"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "touched" = callPackage @@ -290429,6 +288947,8 @@ self: { pname = "transformers"; version = "0.6.0.4"; sha256 = "1jw9c89yri37hsai6jgckfdana1gqjr15xnanxzm3vahvgcb5f1s"; + revision = "1"; + editedCabalFile = "0j369jl6y2p3gyhhxyr24x7dbdgvlgnnfxjb63f9gkb9b11rbq3q"; libraryHaskellDepends = [ base ]; description = "Concrete functor and monad transformers"; license = lib.licenses.bsd3; @@ -290477,29 +288997,19 @@ self: { libraryHaskellDepends = [ base mmorph transformers ]; description = "Bifunctors over monad transformers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "transformers-compat" = callPackage ({ mkDerivation, base, ghc-prim, transformers }: mkDerivation { pname = "transformers-compat"; - version = "0.6.6"; - sha256 = "1yd936az31g9995frc84g05rrb5b7w59ajssc5183lp6wm8h4bky"; - libraryHaskellDepends = [ base ghc-prim transformers ]; - description = "A small compatibility shim for the transformers library"; - license = lib.licenses.bsd3; - }) {}; - - "transformers-compat_0_7_2" = callPackage - ({ mkDerivation, base, ghc-prim, transformers }: - mkDerivation { - pname = "transformers-compat"; version = "0.7.2"; sha256 = "0slxrkxi8xa1bmi9saq9x8bz52clrf2slf877m3ckjzkr4276b5n"; libraryHaskellDepends = [ base ghc-prim transformers ]; description = "A small compatibility shim for the transformers library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "transformers-compose" = callPackage @@ -291118,6 +289628,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Non-Determinism Monad for Tree Search"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tree-render-text" = callPackage @@ -291659,6 +290171,7 @@ self: { description = "Various trie implementations in Haskell"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "trifecta" = callPackage @@ -291889,7 +290402,6 @@ self: { executableHaskellDepends = [ base containers parseargs WAVE ]; description = "Audio file compressor-limiter"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "truelevel"; }) {}; @@ -291931,8 +290443,6 @@ self: { testHaskellDepends = [ base binary containers cropty merge text ]; description = "An implementation of a trust chain"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "truthful" = callPackage @@ -292230,22 +290740,6 @@ self: { }: mkDerivation { pname = "ttc"; - version = "1.1.1.1"; - sha256 = "1zk4iavn51s89m35w7fwi7z9c5gkz98f8phv5bp4f9ajirmhn6r1"; - libraryHaskellDepends = [ base bytestring template-haskell text ]; - testHaskellDepends = [ - base bytestring tasty tasty-hunit template-haskell text - ]; - description = "Textual Type Classes"; - license = lib.licenses.mit; - }) {}; - - "ttc_1_2_0_0" = callPackage - ({ mkDerivation, base, bytestring, tasty, tasty-hunit - , template-haskell, text - }: - mkDerivation { - pname = "ttc"; version = "1.2.0.0"; sha256 = "0x5xq00ls290s3ivzzlg4dq0rgzx1x6nzkch49ylwvb5xicmzgm5"; revision = "1"; @@ -292256,7 +290750,6 @@ self: { ]; description = "Textual Type Classes"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "ttl-hashtables" = callPackage @@ -292279,6 +290772,8 @@ self: { ]; description = "Extends hashtables so that entries added can be expired after a TTL"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ttn" = callPackage @@ -292455,12 +290950,14 @@ self: { ({ mkDerivation, base, ghc-prim, hspec, template-haskell }: mkDerivation { pname = "tuple-append"; - version = "0.1.2.0"; - sha256 = "0fiq5v8y5plzw1rmsv7hh951fnz45r714p38nrql940pp7qyh9rj"; + version = "0.2.0.0"; + sha256 = "18516636w3bgwvymdbzw1971fhja7lrpwx78nz5n67qq23il7rrq"; libraryHaskellDepends = [ base ghc-prim template-haskell ]; testHaskellDepends = [ base ghc-prim hspec ]; description = "A package to append items and tuples into new tuples"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tuple-append-instances" = callPackage @@ -292476,6 +290973,7 @@ self: { ]; description = "Extra instances for the typeclasses in the tuple-append package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "tuple-gen" = callPackage @@ -292674,7 +291172,6 @@ self: { description = "An implementation of Turing Machine and Automaton"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "turkish-deasciifier" = callPackage @@ -293099,6 +291596,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "twhs"; + broken = true; }) {}; "twidge" = callPackage @@ -293284,8 +291782,8 @@ self: { }: mkDerivation { pname = "twitchapi"; - version = "0.0.3"; - sha256 = "1wbkix4cmkzgg5mz6d721107nra00dr00nhigq55wkzhnpf39lbz"; + version = "0.0.4"; + sha256 = "0mbsajf5sz305ym0j3wlilvw74qpd3rn0pr9l9cvwb8lvbwvbyb8"; libraryHaskellDepends = [ aeson base bytestring hoauth2 http-client text time timerep uri-bytestring @@ -293348,7 +291846,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Twitter API package with conduit interface and Streaming API support"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "twitter-enumerator" = callPackage @@ -293412,8 +291909,6 @@ self: { ]; description = "Twitter JSON parser and types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "twitter-types-lens" = callPackage @@ -293429,7 +291924,6 @@ self: { ]; description = "Twitter JSON types (lens powered)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "tx" = callPackage @@ -293739,10 +292233,8 @@ self: { }: mkDerivation { pname = "type-errors"; - version = "0.2.0.0"; - sha256 = "1d1fi4ij18q39rpibc056mgvly75zqixkba4l8bn307c62f50k8p"; - revision = "3"; - editedCabalFile = "0ig8qd2g8rd5n78039xhbq7n8r514f8kvbh0mgajav2a5lp549s1"; + version = "0.2.0.1"; + sha256 = "0ds1y5gjjgd2g3dsn8bfcviy6zv8nvmyaifysmb7ckggdfg3cdym"; libraryHaskellDepends = [ base first-class-families syb template-haskell th-abstraction ]; @@ -293764,6 +292256,8 @@ self: { testHaskellDepends = [ base doctest Glob ]; description = "Combinators for writing pretty type errors easily"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "type-fun" = callPackage @@ -293907,25 +292401,12 @@ self: { ({ mkDerivation, base, doctest, Glob }: mkDerivation { pname = "type-level-kv-list"; - version = "1.1.0"; - sha256 = "0wvxgxp7rlqbf2crcpb9pbzl3k47i7pc16ih4zfwgv88j7jk5w2g"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest Glob ]; - description = "A module for hash map like object with type level keys"; - license = lib.licenses.mit; - }) {}; - - "type-level-kv-list_2_0_0" = callPackage - ({ mkDerivation, base, doctest, Glob }: - mkDerivation { - pname = "type-level-kv-list"; version = "2.0.0"; sha256 = "0m1hyddkc7652crki2r2rd0c7mr9sqcj57vhhkn280plqpmbl1kx"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base doctest Glob ]; description = "Type level Key-Value list"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "type-level-kv-list-esqueleto" = callPackage @@ -293937,8 +292418,19 @@ self: { libraryHaskellDepends = [ base esqueleto text type-level-kv-list ]; description = "Make Esqueleto handy with type-level-kv-list"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; + }) {}; + + "type-level-kv-list-persistent" = callPackage + ({ mkDerivation, base, persistent, text, type-level-kv-list }: + mkDerivation { + pname = "type-level-kv-list-persistent"; + version = "0.2.0.0"; + sha256 = "1n9niak3d4vnrpfsr7ydnbphlgviqwwzrnjg84grjx0rfm2ffxy2"; + libraryHaskellDepends = [ + base persistent text type-level-kv-list + ]; + description = "Make Persistent Raw SQL handy with type-level-kv-list"; + license = lib.licenses.mit; }) {}; "type-level-natural-number" = callPackage @@ -294003,6 +292495,8 @@ self: { libraryHaskellDepends = [ base ghc-prim ]; description = "Type-level sets and finite maps (with value-level counterparts)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "type-level-tf" = callPackage @@ -294071,6 +292565,33 @@ self: { license = lib.licenses.bsd3; }) {}; + "type-natural_1_2_0_1" = callPackage + ({ mkDerivation, base, constraints, equational-reasoning, ghc + , ghc-typelits-knownnat, ghc-typelits-natnormalise + , ghc-typelits-presburger, integer-logarithms, QuickCheck + , quickcheck-instances, tasty, tasty-discover, tasty-hunit + , tasty-quickcheck, template-haskell + }: + mkDerivation { + pname = "type-natural"; + version = "1.2.0.1"; + sha256 = "0ygv8s36k4f11fr0wrz7wryj5b3a3j8pxzbz1h4r1w4ij15krd8x"; + libraryHaskellDepends = [ + base constraints equational-reasoning ghc ghc-typelits-knownnat + ghc-typelits-natnormalise ghc-typelits-presburger + integer-logarithms template-haskell + ]; + testHaskellDepends = [ + base equational-reasoning integer-logarithms QuickCheck + quickcheck-instances tasty tasty-discover tasty-hunit + tasty-quickcheck template-haskell + ]; + testToolDepends = [ tasty-discover ]; + description = "Type-level natural and proofs of their properties"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "type-of-html" = callPackage ({ mkDerivation, base, blaze-html, bytestring, containers , criterion, deepseq, double-conversion, ghc, ghc-paths, ghc-prim @@ -294171,8 +292692,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "Support functions to work with type representations"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "type-rig" = callPackage @@ -294184,8 +292703,6 @@ self: { libraryHaskellDepends = [ base invariant ]; description = "Classes for the rig (sums and products) of types"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "type-safe-avl" = callPackage @@ -294199,6 +292716,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Type safe BST and AVL trees"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "type-sets" = callPackage @@ -294364,8 +292883,6 @@ self: { ]; description = "Mock functions and expressions anywhere"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "typeable-th" = callPackage @@ -294395,8 +292912,6 @@ self: { testHaskellDepends = [ base containers ghc ghc-tcplugins-extra ]; description = "Simple type check plugin which calculate addition, subtraction and less-or-equal-than"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "typed-admin" = callPackage @@ -294541,6 +293056,7 @@ self: { executableHaskellDepends = [ base diagrams-lib text ]; description = "Typed and composable spreadsheets"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -294652,7 +293168,6 @@ self: { description = "Typed frontend to TensorFlow and higher-order deep learning"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "typedquery" = callPackage @@ -294732,6 +293247,7 @@ self: { description = "Solve type equalities using custom type-level rewrite rules"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "typelevel-tensor" = callPackage @@ -294775,6 +293291,8 @@ self: { libraryHaskellDepends = [ base dependent-sum ]; description = "Existential witnesses, singletons, and classes for operations on GHC TypeLits"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "typenums" = callPackage @@ -294879,8 +293397,8 @@ self: { }: mkDerivation { pname = "typesafe-precure"; - version = "0.9.0.1"; - sha256 = "10965lqb2f2fk5zyzdvk72bc9ja9kl17fqpb9b96pazw74qjm7a5"; + version = "0.9.1.1"; + sha256 = "0g04zr6nd7fsbj6xjvr151kbq2j1hmm9fdnj4mlh26s0gacbpv7w"; libraryHaskellDepends = [ aeson aeson-pretty autoexporter base bytestring dlist monad-skeleton template-haskell text th-data-compat @@ -295114,8 +293632,8 @@ self: { }: mkDerivation { pname = "tzdata"; - version = "0.2.20221028.0"; - sha256 = "1cm18g2fv8r11picmq2rf4hz77j2dgx6r6cdamdsq1ap0hv2jdqv"; + version = "0.2.20221129.0"; + sha256 = "1fclrprpm9cgdyvcaninrxz428n2562sanabik0yayikppdpagcc"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base bytestring containers deepseq vector @@ -295803,6 +294321,7 @@ self: { description = "Opinionated Haskell Interoperability"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unbound" = callPackage @@ -295883,7 +294402,6 @@ self: { description = "Thread delays and timeouts using proper time units"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "unboxed" = callPackage @@ -295895,6 +294413,8 @@ self: { libraryHaskellDepends = [ base ghc-prim ]; description = "All the standard sum types but strict and unboxed as possible"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unboxed-containers" = callPackage @@ -296015,8 +294535,6 @@ self: { ]; description = "Manipulating numbers with inherent experimental/measurement uncertainty"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "unconstrained" = callPackage @@ -296100,8 +294618,6 @@ self: { ]; description = "Class of data structures that can be unfolded"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "unfoldable-restricted" = callPackage @@ -296118,7 +294634,6 @@ self: { ]; description = "An alternative to the Unfoldable typeclass"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "unfork" = callPackage @@ -296333,19 +294848,16 @@ self: { license = lib.licenses.asl20; }) {}; - "unicode-data_0_4_0" = callPackage - ({ mkDerivation, base, deepseq, hspec, hspec-discover, tasty - , tasty-bench - }: + "unicode-data_0_4_0_1" = callPackage + ({ mkDerivation, base, deepseq, hspec, tasty, tasty-bench }: mkDerivation { pname = "unicode-data"; - version = "0.4.0"; - sha256 = "09s1chc7g9sgvjxs6ld5m4vrkm1shf7401ywffjrx1xfdjidb428"; + version = "0.4.0.1"; + sha256 = "1030n3h11hk1rbq0fdbpry3aclz6yz8bki2abjvbwh0rh2kdx99p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec ]; - testToolDepends = [ hspec-discover ]; benchmarkHaskellDepends = [ base deepseq tasty tasty-bench ]; description = "Access Unicode Character Database (UCD)"; license = lib.licenses.asl20; @@ -296373,16 +294885,15 @@ self: { }) {}; "unicode-data-scripts" = callPackage - ({ mkDerivation, base, deepseq, hspec, hspec-discover, tasty - , tasty-bench, unicode-data + ({ mkDerivation, base, deepseq, hspec, tasty, tasty-bench + , unicode-data }: mkDerivation { pname = "unicode-data-scripts"; - version = "0.2.0"; - sha256 = "13igfgjqkkh5az5cxkqlp51ix34d9m8hgsjqc342hcbbal51zc82"; + version = "0.2.0.1"; + sha256 = "0kpa2g59w9yiyl3adak7k0g9wnkwzv97c82x7bsrqvk23bdljxc0"; libraryHaskellDepends = [ base unicode-data ]; testHaskellDepends = [ base hspec unicode-data ]; - testToolDepends = [ hspec-discover ]; benchmarkHaskellDepends = [ base deepseq tasty tasty-bench unicode-data ]; @@ -296426,6 +294937,8 @@ self: { ]; description = "Unicode General Category Database"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unicode-names" = callPackage @@ -296750,8 +295263,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq lens ]; description = "Extensible type-safe unions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "union-angle" = callPackage @@ -297174,6 +295685,7 @@ self: { ]; description = "A domain-specific type system for dimensional analysis"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "units-attoparsec" = callPackage @@ -297190,7 +295702,6 @@ self: { description = "Attoparsec parsers for the units package"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "units-defs" = callPackage @@ -297202,6 +295713,7 @@ self: { libraryHaskellDepends = [ base template-haskell units ]; description = "Definitions for use with the units package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "units-parser" = callPackage @@ -297351,8 +295863,7 @@ self: { }) {}; "universe-base" = callPackage - ({ mkDerivation, base, containers, ghc-prim, QuickCheck, tagged - , transformers + ({ mkDerivation, base, containers, QuickCheck, tagged, transformers }: mkDerivation { pname = "universe-base"; @@ -297360,9 +295871,7 @@ self: { sha256 = "0lnvjpndqj7kk3f95dmpa62ax0m243h8iy7ghcsd2db4nyczx7f5"; revision = "3"; editedCabalFile = "0hnd5vxsncwyjsindfmsvp9jbixanhmzczhrmd8s8g6imgb0mzyk"; - libraryHaskellDepends = [ - base containers ghc-prim tagged transformers - ]; + libraryHaskellDepends = [ base containers tagged transformers ]; testHaskellDepends = [ base containers QuickCheck ]; description = "A class for finite and recursively enumerable types"; license = lib.licenses.bsd3; @@ -297487,31 +295996,6 @@ self: { }) {}; "universum" = callPackage - ({ mkDerivation, base, bytestring, containers, deepseq, doctest - , gauge, ghc-prim, Glob, hashable, hedgehog, microlens - , microlens-mtl, mtl, safe-exceptions, stm, tasty, tasty-hedgehog - , text, transformers, unordered-containers, utf8-string, vector - }: - mkDerivation { - pname = "universum"; - version = "1.7.3"; - sha256 = "1dhdj72anj3r50idzn45l63zdwkckmbvll65rkwbsn4jj7pd033d"; - libraryHaskellDepends = [ - base bytestring containers deepseq ghc-prim hashable microlens - microlens-mtl mtl safe-exceptions stm text transformers - unordered-containers utf8-string vector - ]; - testHaskellDepends = [ - base bytestring doctest Glob hedgehog tasty tasty-hedgehog text - ]; - benchmarkHaskellDepends = [ - base containers gauge text unordered-containers - ]; - description = "Custom prelude used in Serokell"; - license = lib.licenses.mit; - }) {}; - - "universum_1_8_1" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, gauge , ghc-prim, hashable, hedgehog, microlens, microlens-mtl, mtl , safe-exceptions, stm, tasty, tasty-discover, tasty-hedgehog, text @@ -297535,7 +296019,6 @@ self: { ]; description = "Custom prelude used in Serokell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "unix_2_8_0_0" = callPackage @@ -297782,6 +296265,8 @@ self: { ]; description = "Typeclass for monads that can be unlifted to arbitrary base monads"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unlift-stm" = callPackage @@ -297882,9 +296367,7 @@ self: { ]; description = "Fast and robust message queues for concurrent processes"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; mainProgram = "unliftio-messagebox-memleak-test"; - broken = true; }) {}; "unliftio-path" = callPackage @@ -297975,28 +296458,6 @@ self: { "unordered-containers" = callPackage ({ mkDerivation, base, bytestring, ChasingBottoms, containers - , deepseq, hashable, hashmap, HUnit, mtl, QuickCheck, random, tasty - , tasty-bench, tasty-hunit, tasty-quickcheck, template-haskell - }: - mkDerivation { - pname = "unordered-containers"; - version = "0.2.17.0"; - sha256 = "05ss6ys9gp7dx93glhrm19fxdl916m7yaqxi6p06ibka1dp3m7n4"; - libraryHaskellDepends = [ base deepseq hashable template-haskell ]; - testHaskellDepends = [ - base ChasingBottoms containers hashable HUnit QuickCheck random - tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring containers deepseq hashable hashmap mtl random - tasty-bench - ]; - description = "Efficient hashing-based container types"; - license = lib.licenses.bsd3; - }) {}; - - "unordered-containers_0_2_19_1" = callPackage - ({ mkDerivation, base, bytestring, ChasingBottoms, containers , deepseq, hashable, hashmap, HUnit, mtl, nothunks, QuickCheck , random, tasty, tasty-bench, tasty-hunit, tasty-quickcheck , template-haskell @@ -298018,7 +296479,6 @@ self: { ]; description = "Efficient hashing-based container types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "unordered-containers-rematch" = callPackage @@ -298141,13 +296601,13 @@ self: { "unpacked-maybe-numeric" = callPackage ({ mkDerivation, base, primitive, QuickCheck, quickcheck-classes - , wide-word + , wide-word, word-compat }: mkDerivation { pname = "unpacked-maybe-numeric"; - version = "0.1.2.0"; - sha256 = "08cm7121c2ddj2fqfjhqjs3y1yskzcsxjq2q8pbq1ndicmlrw1b0"; - libraryHaskellDepends = [ base primitive wide-word ]; + version = "0.1.2.1"; + sha256 = "0chb52gff3zm6f6p7dp5j6p7vpgmmirx0sfqbswx69w9jsf6p8bk"; + libraryHaskellDepends = [ base primitive wide-word word-compat ]; testHaskellDepends = [ base QuickCheck quickcheck-classes ]; description = "maybes of numeric values with fewer indirections"; license = lib.licenses.bsd3; @@ -298159,6 +296619,8 @@ self: { pname = "unpacked-maybe-text"; version = "0.1.0.0"; sha256 = "10mc9kjjqf82ddi586g5r6h065znhj9s0ih9w800yw4xl65ygayv"; + revision = "1"; + editedCabalFile = "0g24c223yxsvkzk0y78q9qn94xxvmw088ihwk3rrd2q3l2nax4rw"; libraryHaskellDepends = [ base bytestring text-short ]; description = "optional text that unpacks well"; license = lib.licenses.bsd3; @@ -298291,6 +296753,8 @@ self: { libraryHaskellDepends = [ base ghc ]; description = "Unsatisfiable type class"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unscramble" = callPackage @@ -298464,8 +296928,8 @@ self: { }: mkDerivation { pname = "update-nix-fetchgit"; - version = "0.2.9"; - sha256 = "0wdw03pl5bx8vsi3kg4l902ah2l1v4x8922g9malyqyh3bvqfham"; + version = "0.2.11"; + sha256 = "07wabhr8hfz4f504wfi9achrl9h6iqn5sphkqfrydzfj7p7nyn9f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -299027,6 +297491,7 @@ self: { ]; description = "Painfully simple URL deployment"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "urn" = callPackage @@ -299378,14 +297843,15 @@ self: { }) {}; "utf8-light" = callPackage - ({ mkDerivation, base, bytestring, ghc-prim }: + ({ mkDerivation, base, bytestring, ghc-prim, hspec, hspec-discover + }: mkDerivation { pname = "utf8-light"; - version = "0.4.2"; - sha256 = "0rwyc5z331yfnm4hpx0sph6i1zvkd1z10vvglhnp0vc9wy644k0q"; - revision = "1"; - editedCabalFile = "08fwf4pchlrmqrk78wijncrkvv0kssl1140xm9cfl7rd2y97cs7n"; + version = "0.4.4.0"; + sha256 = "0415hapndlsnzvmm3bk2fl42h4vn1izky7jb3lbby3mzzzd8d1fx"; libraryHaskellDepends = [ base bytestring ghc-prim ]; + testHaskellDepends = [ base bytestring ghc-prim hspec ]; + testToolDepends = [ hspec-discover ]; description = "Unicode"; license = lib.licenses.bsd3; }) {}; @@ -299692,6 +298158,7 @@ self: { executableHaskellDepends = [ base uuagc-cabal ]; description = "Attribute Grammar System of Universiteit Utrecht"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "uuagc"; }) {}; @@ -299733,6 +298200,8 @@ self: { ]; description = "Cabal plugin for UUAGC"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "uuagc-diagrams" = callPackage @@ -299925,7 +298394,9 @@ self: { testHaskellDepends = [ base Cabal HUnit text ]; description = "Tweak .cabal files"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.berberman ]; + broken = true; }) {}; "uvector" = callPackage @@ -300872,7 +299343,6 @@ self: { description = "Common types and instances for Vaultaire"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "vcache" = callPackage @@ -301189,8 +299659,8 @@ self: { }) {}; "vector_0_13_0_0" = callPackage - ({ mkDerivation, base, base-orphans, deepseq, HUnit, primitive - , QuickCheck, random, tasty, tasty-bench, tasty-hunit + ({ mkDerivation, base, base-orphans, deepseq, doctest, HUnit + , primitive, QuickCheck, random, tasty, tasty-bench, tasty-hunit , tasty-inspection-testing, tasty-quickcheck, template-haskell , transformers, vector-stream }: @@ -301202,7 +299672,7 @@ self: { editedCabalFile = "12cwdaqsy9dv7j7cwq6r6kdyfxqiya8khm6ccaabjhhpa2aqwljl"; libraryHaskellDepends = [ base deepseq primitive vector-stream ]; testHaskellDepends = [ - base base-orphans HUnit primitive QuickCheck random tasty + base base-orphans doctest HUnit primitive QuickCheck random tasty tasty-hunit tasty-inspection-testing tasty-quickcheck template-haskell transformers ]; @@ -301272,8 +299742,8 @@ self: { pname = "vector-binary-instances"; version = "0.2.5.2"; sha256 = "0kgmlb4rf89b18d348cf2k06xfhdpamhmvq7iz5pab5014hknbmp"; - revision = "2"; - editedCabalFile = "149gn5n722r2skj5w46av3944fbw3882qkaydq7asm6zx5kc0nj6"; + revision = "3"; + editedCabalFile = "0av0k2gn90mf5ai74575bd368x73ljnr7xlkwsqmrs6zdzkw0i83"; libraryHaskellDepends = [ base binary vector ]; testHaskellDepends = [ base binary tasty tasty-quickcheck vector ]; benchmarkHaskellDepends = [ @@ -301447,6 +299917,23 @@ self: { license = lib.licenses.mit; }) {}; + "vector-extras_0_2_8" = callPackage + ({ mkDerivation, base, containers, deferred-folds, foldl, hashable + , unordered-containers, vector + }: + mkDerivation { + pname = "vector-extras"; + version = "0.2.8"; + sha256 = "1xnz733p9p66693hb31fmq2cfsy2rwyw1b0915p7y5my1d8dxyzi"; + libraryHaskellDepends = [ + base containers deferred-folds foldl hashable unordered-containers + vector + ]; + description = "Utilities for the \"vector\" library"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "vector-fft" = callPackage ({ mkDerivation, base, primitive, vector }: mkDerivation { @@ -301810,6 +300297,7 @@ self: { ]; description = "GIS Vector Tiles, as defined by Mapbox"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "vega-view" = callPackage @@ -301829,7 +300317,9 @@ self: { ]; description = "Easily view Vega or Vega-Lite visualizations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "vegaview"; + broken = true; }) {}; "velma" = callPackage @@ -301849,9 +300339,7 @@ self: { testHaskellDepends = [ base Cabal filepath hspec text ]; description = "Automatically add files to exposed-modules and other-modules"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "velma"; - broken = true; }) {}; "venzone" = callPackage @@ -302045,7 +300533,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "verismith"; - broken = true; }) {}; "verset" = callPackage @@ -302061,6 +300548,8 @@ self: { ]; description = "Small alternative prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "versioning" = callPackage @@ -302073,6 +300562,8 @@ self: { testHaskellDepends = [ aeson base bytestring hspec ]; description = "Type-safe data versioning"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "versioning-servant" = callPackage @@ -302094,7 +300585,6 @@ self: { description = "Servant combinators for the versioning library"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "versions" = callPackage @@ -302119,22 +300609,24 @@ self: { "vessel" = callPackage ({ mkDerivation, aeson, aeson-gadt-th, base, base-orphans - , bifunctors, constraints, constraints-extras, containers - , dependent-map, dependent-monoidal-map, dependent-sum + , bifunctors, commutative-semigroups, constraints + , constraints-extras, containers, dependent-map + , dependent-monoidal-map, dependent-sum , dependent-sum-aeson-orphans, dependent-sum-template, lens , markdown-unlit, monoidal-containers, mtl, patch, reflex , semialign, text, these, witherable }: mkDerivation { pname = "vessel"; - version = "0.2.1.0"; - sha256 = "04pvn5rs3pgi917m0rsfmjxc035ns8sd79vza72qh0skvsg81pq6"; + version = "0.3.0.0"; + sha256 = "1vqbrz8g9r43q6rqall6xhw6f4c56fj6lwp6cz0758fr7n4n3mqa"; libraryHaskellDepends = [ - aeson aeson-gadt-th base base-orphans bifunctors constraints - constraints-extras containers dependent-map dependent-monoidal-map - dependent-sum dependent-sum-aeson-orphans dependent-sum-template - lens markdown-unlit monoidal-containers mtl patch reflex semialign - text these witherable + aeson aeson-gadt-th base base-orphans bifunctors + commutative-semigroups constraints constraints-extras containers + dependent-map dependent-monoidal-map dependent-sum + dependent-sum-aeson-orphans dependent-sum-template lens + markdown-unlit monoidal-containers mtl patch reflex semialign text + these witherable ]; libraryToolDepends = [ markdown-unlit ]; doHaddock = false; @@ -302182,6 +300674,8 @@ self: { ]; description = "A Python str.format() like formatter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "vformat-aeson" = callPackage @@ -302205,7 +300699,6 @@ self: { description = "Extend vformat to Aeson datatypes"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "vformat-time" = callPackage @@ -302220,6 +300713,7 @@ self: { testHaskellDepends = [ base time vformat ]; description = "Extend vformat to time datatypes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "vfr-waypoints" = callPackage @@ -302276,7 +300770,9 @@ self: { ]; description = "A pager for grep"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "vgrep"; + broken = true; }) {}; "vhd" = callPackage @@ -302502,28 +300998,6 @@ self: { }: mkDerivation { pname = "vinyl"; - version = "0.13.3"; - sha256 = "0mlk94n3s4ah8y9w9vcrk1n7gnsm19d1iijk9da4219dwrkaax2l"; - libraryHaskellDepends = [ array base deepseq ghc-prim ]; - testHaskellDepends = [ - aeson base hspec lens lens-aeson microlens mtl should-not-typecheck - text unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base criterion linear microlens mwc-random primitive tagged vector - ]; - description = "Extensible Records"; - license = lib.licenses.mit; - }) {}; - - "vinyl_0_14_3" = callPackage - ({ mkDerivation, aeson, array, base, criterion, deepseq, ghc-prim - , hspec, lens, lens-aeson, linear, microlens, mtl, mwc-random - , primitive, should-not-typecheck, tagged, text - , unordered-containers, vector - }: - mkDerivation { - pname = "vinyl"; version = "0.14.3"; sha256 = "1lp67kaksng2g9sx4my8c6sllvjrlkhm2ln8bh397d1xknzrqy76"; libraryHaskellDepends = [ array base deepseq ghc-prim ]; @@ -302536,7 +301010,6 @@ self: { ]; description = "Extensible Records"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "vinyl-generics" = callPackage @@ -302554,6 +301027,7 @@ self: { ]; description = "Convert plain records to vinyl (and vice versa), generically"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "vinyl-gl" = callPackage @@ -302815,7 +301289,9 @@ self: { ]; description = "Visualize CBN reduction"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "visualize-cbn"; + broken = true; }) {}; "vitrea" = callPackage @@ -303053,6 +301529,7 @@ self: { ]; description = "Reading of Vorbis comments from Ogg Vorbis files"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "vowpal-utils" = callPackage @@ -303204,43 +301681,6 @@ self: { broken = true; }) {inherit (pkgs) vte;}; - "vty" = callPackage - ({ mkDerivation, ansi-terminal, base, binary, blaze-builder - , bytestring, Cabal, containers, deepseq, directory, filepath - , hashable, HUnit, microlens, microlens-mtl, microlens-th, mtl - , parallel, parsec, QuickCheck, quickcheck-assertions, random - , smallcheck, stm, string-qq, terminfo, test-framework - , test-framework-hunit, test-framework-smallcheck, text - , transformers, unix, utf8-string, vector - }: - mkDerivation { - pname = "vty"; - version = "5.33"; - sha256 = "0qsx4lwlkp6mwyr7rm1r9dg5ic1lc1awqgyag0nj1qgj2gnv6nc9"; - revision = "1"; - editedCabalFile = "1in66nd2xkb6mxxzazny900pz1xj83iqsql42c0rwk72chnnb8cd"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - ansi-terminal base binary blaze-builder bytestring containers - deepseq directory filepath hashable microlens microlens-mtl - microlens-th mtl parallel parsec stm terminfo text transformers - unix utf8-string vector - ]; - executableHaskellDepends = [ - base containers directory filepath microlens microlens-mtl mtl - ]; - testHaskellDepends = [ - base blaze-builder bytestring Cabal containers deepseq HUnit - microlens microlens-mtl mtl QuickCheck quickcheck-assertions random - smallcheck stm string-qq terminfo test-framework - test-framework-hunit test-framework-smallcheck text unix - utf8-string vector - ]; - description = "A simple terminal UI library"; - license = lib.licenses.bsd3; - }) {}; - "vty_5_35_1" = callPackage ({ mkDerivation, ansi-terminal, base, binary, blaze-builder , bytestring, Cabal, containers, deepseq, directory, filepath @@ -303277,7 +301717,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "vty_5_37" = callPackage + "vty" = callPackage ({ mkDerivation, ansi-terminal, base, binary, blaze-builder , bytestring, Cabal, containers, deepseq, directory, filepath , hashable, HUnit, microlens, microlens-mtl, microlens-th, mtl @@ -303310,7 +301750,6 @@ self: { ]; description = "A simple terminal UI library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "vty-examples" = callPackage @@ -303830,38 +302269,6 @@ self: { "wai-extra" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, base64-bytestring , bytestring, call-stack, case-insensitive, containers, cookie - , data-default-class, directory, fast-logger, hspec, http-types - , http2, HUnit, iproute, network, resourcet, streaming-commons - , temporary, text, time, transformers, unix, vault, wai, wai-logger - , word8, zlib - }: - mkDerivation { - pname = "wai-extra"; - version = "3.1.12.1"; - sha256 = "1ya4m0c2p3wxzjlmk3yasc3pm61z309hzry9d39lj5wqv93a4wn6"; - revision = "2"; - editedCabalFile = "139iqd6fqqj9xlpnbgva8y3wvakp2lyndk4bkvq46pq2xir4gqkf"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson ansi-terminal base base64-bytestring bytestring call-stack - case-insensitive containers cookie data-default-class directory - fast-logger http-types http2 HUnit iproute network resourcet - streaming-commons text time transformers unix vault wai wai-logger - word8 - ]; - testHaskellDepends = [ - aeson base bytestring case-insensitive cookie directory fast-logger - hspec http-types http2 HUnit iproute resourcet temporary text time - transformers wai zlib - ]; - description = "Provides some basic WAI handlers and middleware"; - license = lib.licenses.mit; - }) {}; - - "wai-extra_3_1_13_0" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, base64-bytestring - , bytestring, call-stack, case-insensitive, containers, cookie , data-default-class, directory, fast-logger, hspec, hspec-discover , http-types, HUnit, iproute, network, resourcet, streaming-commons , temporary, text, time, transformers, unix, vault, wai, wai-logger @@ -303890,7 +302297,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Provides some basic WAI handlers and middleware"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "wai-feature-flags" = callPackage @@ -303927,6 +302333,7 @@ self: { ]; description = "Run CGI apps on WAI"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "wai-git-http" = callPackage @@ -304027,8 +302434,6 @@ self: { testToolDepends = [ tasty-discover ]; description = "Wrap WAI applications to run on AWS Lambda"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "wai-handler-launch" = callPackage @@ -304215,14 +302620,15 @@ self: { }: mkDerivation { pname = "wai-log"; - version = "0.3.0.0"; - sha256 = "0mgby05lq9j31ssyk2yp6mghqwgpffkki7pygday1lmg130n8n74"; + version = "0.4.0.1"; + sha256 = "02lrbvl1rj3jmm9z2mjrkss0lz7jz8xx6cknznd2i4rhirl1vlhr"; libraryHaskellDepends = [ aeson base bytestring http-types log-base string-conversions text time uuid wai ]; description = "A logging middleware for WAI applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-logger" = callPackage @@ -304579,6 +302985,7 @@ self: { ]; description = "Route to different middlewares based on the incoming Accept header"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-middleware-crowd" = callPackage @@ -305020,6 +303427,7 @@ self: { ]; description = "Route Wai middlewares based on HTTP verbs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-predicates" = callPackage @@ -305047,17 +303455,6 @@ self: { }) {}; "wai-rate-limit" = callPackage - ({ mkDerivation, base, http-types, wai }: - mkDerivation { - pname = "wai-rate-limit"; - version = "0.2.0.0"; - sha256 = "1jxg6sdbzx20dlxwbjw4b5x9qc1hsx2hzqxgzks3wlj6jc8ar4rx"; - libraryHaskellDepends = [ base http-types wai ]; - description = "Rate limiting as WAI middleware"; - license = lib.licenses.mit; - }) {}; - - "wai-rate-limit_0_3_0_0" = callPackage ({ mkDerivation, base, http-types, time-units, wai }: mkDerivation { pname = "wai-rate-limit"; @@ -305066,7 +303463,6 @@ self: { libraryHaskellDepends = [ base http-types time-units wai ]; description = "Rate limiting as WAI middleware"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "wai-rate-limit-postgres" = callPackage @@ -305164,6 +303560,7 @@ self: { ]; description = "WAI middleware for path-based request routing with captures"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "wai-router" = callPackage @@ -305234,24 +303631,6 @@ self: { "wai-saml2" = callPackage ({ mkDerivation, base, base64-bytestring, bytestring, c14n - , cryptonite, data-default-class, http-types, mtl, text, time - , vault, wai, wai-extra, x509, x509-store, xml-conduit - }: - mkDerivation { - pname = "wai-saml2"; - version = "0.2.1.3"; - sha256 = "1q1il1lwzinpyhkqrg62hwh7kbb2dyhrlynpzhc9kps00kfxg8zw"; - libraryHaskellDepends = [ - base base64-bytestring bytestring c14n cryptonite - data-default-class http-types mtl text time vault wai wai-extra - x509 x509-store xml-conduit - ]; - description = "SAML2 assertion validation as WAI middleware"; - license = lib.licenses.mit; - }) {}; - - "wai-saml2_0_3_0_1" = callPackage - ({ mkDerivation, base, base64-bytestring, bytestring, c14n , cryptonite, data-default-class, filepath, http-types, mtl , pretty-show, tasty, tasty-golden, text, time, vault, wai , wai-extra, x509, x509-store, xml-conduit @@ -305273,7 +303652,6 @@ self: { ]; description = "SAML2 assertion validation as WAI middleware"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "wai-secure-cookies" = callPackage @@ -305333,7 +303711,6 @@ self: { description = "An alternative session middleware for WAI"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "wai-session-clientsession" = callPackage @@ -305551,6 +303928,7 @@ self: { transformers wai wai-websockets websockets ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-util" = callPackage @@ -305742,44 +304120,12 @@ self: { ]; description = "A parser for the Web Archive (WARC) format"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "warc-export"; + broken = true; }) {}; "warp" = callPackage - ({ mkDerivation, array, async, auto-update, base, bsb-http-chunked - , bytestring, case-insensitive, containers, directory, gauge - , ghc-prim, hashable, hspec, hspec-discover, http-client, http-date - , http-types, http2, HUnit, iproute, network, process, QuickCheck - , simple-sendfile, stm, streaming-commons, text, time, time-manager - , unix, unix-compat, unliftio, vault, wai, word8, x509 - }: - mkDerivation { - pname = "warp"; - version = "3.3.21"; - sha256 = "0vrzsj1spa5ygplqpkl4nflqxqbvy641dsjij64ix3n6rzhgqxcg"; - libraryHaskellDepends = [ - array auto-update base bsb-http-chunked bytestring case-insensitive - containers ghc-prim hashable http-date http-types http2 iproute - network simple-sendfile stm streaming-commons text time-manager - unix unix-compat unliftio vault wai word8 x509 - ]; - testHaskellDepends = [ - array async auto-update base bsb-http-chunked bytestring - case-insensitive containers directory ghc-prim hashable hspec - http-client http-date http-types http2 HUnit iproute network - process QuickCheck simple-sendfile stm streaming-commons text time - time-manager unix unix-compat unliftio vault wai word8 x509 - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ - auto-update base bytestring containers gauge hashable http-date - http-types network time-manager unix unix-compat unliftio x509 - ]; - description = "A fast, light-weight web server for WAI applications"; - license = lib.licenses.mit; - }) {}; - - "warp_3_3_23" = callPackage ({ mkDerivation, array, auto-update, base, bsb-http-chunked , bytestring, case-insensitive, containers, directory, gauge , ghc-prim, hashable, hspec, hspec-discover, http-client, http-date @@ -305811,7 +304157,6 @@ self: { ]; description = "A fast, light-weight web server for WAI applications"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "warp-dynamic" = callPackage @@ -305849,7 +304194,6 @@ self: { description = "A minimal gRPC server on top of Warp"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "warp-quic" = callPackage @@ -305908,25 +304252,6 @@ self: { }: mkDerivation { pname = "warp-tls"; - version = "3.3.2"; - sha256 = "0b9viw26ymzq4q8snfddz3w59sqcf5ankxnw6f99iacxjhk6zs6m"; - revision = "1"; - editedCabalFile = "0r4g0j4kcz9rx776mp8hqd06k8b2k7kxd4qjavh2ay6wcplfl0bl"; - libraryHaskellDepends = [ - base bytestring cryptonite data-default-class network - streaming-commons tls tls-session-manager unliftio wai warp - ]; - description = "HTTP over TLS support for Warp via the TLS package"; - license = lib.licenses.mit; - }) {}; - - "warp-tls_3_3_4" = callPackage - ({ mkDerivation, base, bytestring, cryptonite, data-default-class - , network, streaming-commons, tls, tls-session-manager, unliftio - , wai, warp - }: - mkDerivation { - pname = "warp-tls"; version = "3.3.4"; sha256 = "00vgs9v7k0fapl05knqii9g47svf4lapb7ixkll7xr4zvmkk0r0m"; libraryHaskellDepends = [ @@ -305935,7 +304260,6 @@ self: { ]; description = "HTTP over TLS support for Warp via the TLS package"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "warp-tls-uid" = callPackage @@ -306466,7 +304790,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "web-rep-example"; - broken = true; }) {}; "web-routes" = callPackage @@ -306948,7 +305271,6 @@ self: { license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; mainProgram = "testcloud"; - broken = true; }) {}; "webcrank" = callPackage @@ -307025,10 +305347,8 @@ self: { }: mkDerivation { pname = "webdriver"; - version = "0.9.0.1"; - sha256 = "1w6z95swrz5ijmcxh0x3i521kpxqfp6pxgqfqwix7fc4jy450n8k"; - revision = "1"; - editedCabalFile = "04bl53yr1144a3nv9avqjvhl20q0qc5gik6p7cd2naz3i5hfvid1"; + version = "0.10.0.0"; + sha256 = "02vm6wncjzcxmakabnjklkybcyylksfkpj1za541rrjv448zi7qj"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring bytestring call-stack data-default-class directory directory-tree exceptions filepath @@ -307038,8 +305358,6 @@ self: { ]; description = "a Haskell client for the Selenium WebDriver protocol"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "webdriver-angular" = callPackage @@ -307062,6 +305380,7 @@ self: { description = "Webdriver actions to assist with testing a webpage which uses Angular.Js"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "webdriver-snoy" = callPackage @@ -307209,9 +305528,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Pipes wrapper of Webex Teams List API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "webex-teams-pipes-exe"; - broken = true; }) {}; "webfinger-client" = callPackage @@ -307333,6 +305650,7 @@ self: { ]; description = "webfont generator"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "webify"; maintainers = [ lib.maintainers.erictapen ]; }) {}; @@ -307578,6 +305896,19 @@ self: { license = lib.licenses.bsd3; }) {}; + "websockets-json" = callPackage + ({ mkDerivation, aeson, base, bytestring, exceptions, websockets }: + mkDerivation { + pname = "websockets-json"; + version = "1.0.0"; + sha256 = "1kiicrf7gksggjy0pd5z0kbpg5xxfklabcwp1fhzwk468m3nnsah"; + libraryHaskellDepends = [ + aeson base bytestring exceptions websockets + ]; + description = "Extras for working with websockets & JSON"; + license = lib.licenses.mpl20; + }) {}; + "websockets-rpc" = callPackage ({ mkDerivation, aeson, async, base, bytestring, containers , exceptions, hashable, monad-control, mtl, QuickCheck @@ -307604,7 +305935,6 @@ self: { description = "Simple streaming RPC mechanism using WebSockets"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "websockets-simple" = callPackage @@ -307629,6 +305959,7 @@ self: { ]; description = "Composable websockets clients"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "websockets-simple-extra" = callPackage @@ -307639,6 +305970,7 @@ self: { sha256 = "1ckni1imxh4k1nxivvj9p1mffzvdmyjc20nas8b90dkkxblgnk1j"; libraryHaskellDepends = [ base mtl websockets-simple ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "websockets-snap" = callPackage @@ -307649,6 +305981,8 @@ self: { pname = "websockets-snap"; version = "0.10.3.1"; sha256 = "1hpszqb61xhbgfvxd6g56kdfxsyi14q7xh12jbdnyycbfijb9bqk"; + revision = "1"; + editedCabalFile = "08rz1l4f84gcp2a2rsihk6zl3jm2x4igr13fwv2y8m5agsvd2lhy"; libraryHaskellDepends = [ base bytestring bytestring-builder io-streams mtl snap-core snap-server websockets @@ -308212,7 +306546,6 @@ self: { ]; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "why3" = callPackage @@ -308236,16 +306569,18 @@ self: { }) {}; "wide-word" = callPackage - ({ mkDerivation, base, bytestring, deepseq, ghc-prim, hedgehog - , primitive, QuickCheck, quickcheck-classes, semirings + ({ mkDerivation, base, bytestring, deepseq, ghc-prim, hashable + , hedgehog, primitive, QuickCheck, quickcheck-classes, semirings }: mkDerivation { pname = "wide-word"; - version = "0.1.1.2"; - sha256 = "10sj7nca2sba74bkiicnp95xrfq2j1al93ggw3z24982nm9x3j8r"; - revision = "4"; - editedCabalFile = "150ikl5cf15lbk383pv1w8smpwbp0dzc0vby653fbzm8a2svcx76"; - libraryHaskellDepends = [ base deepseq primitive ]; + version = "0.1.3.0"; + sha256 = "03g0v5zp3ra2z31vyjkhgd23s2dyaks640y2imkv649fcvvz33xj"; + revision = "1"; + editedCabalFile = "1y1w3ih92dni6bzp4w1hcwn96ahdrk34lmqrgkri2dcdkykwyqwb"; + libraryHaskellDepends = [ + base deepseq ghc-prim hashable primitive + ]; testHaskellDepends = [ base bytestring ghc-prim hedgehog primitive QuickCheck quickcheck-classes semirings @@ -308302,8 +306637,8 @@ self: { }: mkDerivation { pname = "wikicfp-scraper"; - version = "0.1.0.12"; - sha256 = "03l8ggnnkq7gx5qf9rrng50wb5cabyam8vrs2bnrm02gcgjx89sx"; + version = "0.1.0.13"; + sha256 = "17gsx48zx2zzf755bapr4gv1h3kiyy4ni332i2a7fs14h08qh764"; libraryHaskellDepends = [ attoparsec base bytestring scalpel-core text time ]; @@ -308340,8 +306675,8 @@ self: { }: mkDerivation { pname = "wild-bind"; - version = "0.1.2.8"; - sha256 = "1ag0lwh5pii8z356sii2zm2i7qyk9q9j7ivc3x0fkvz6p5gk1aj1"; + version = "0.1.2.9"; + sha256 = "1jnknyf3lwc0bk50llpqh3mpvn78h36f6h359z9sbwacxpsr8526"; libraryHaskellDepends = [ base containers semigroups text transformers ]; @@ -308393,8 +306728,8 @@ self: { }: mkDerivation { pname = "wild-bind-x11"; - version = "0.2.0.14"; - sha256 = "0qxzv4xvqqm7xcz17a3h1pgc3g84dp3676vb40yi9dfxdwag3xxs"; + version = "0.2.0.15"; + sha256 = "14yxm16cqmmrx6sag8xjnwzwhcyqbmpx0vhslny2r0b5bmnjn2dn"; libraryHaskellDepends = [ base containers fold-debounce mtl semigroups stm text transformers wild-bind X11 @@ -308585,6 +306920,7 @@ self: { ]; description = "Fast binary io-streams adapter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wireguard-hs" = callPackage @@ -308664,27 +307000,8 @@ self: { }: mkDerivation { pname = "witch"; - version = "1.0.2.0"; - sha256 = "1vmn412w11dc1qgw12g0wa6v0miggicgdd7ndml4k4b04sdqbdhq"; - libraryHaskellDepends = [ - base bytestring containers tagged template-haskell text time - ]; - testHaskellDepends = [ - base bytestring containers HUnit tagged text time transformers - ]; - description = "Convert values from one type into another"; - license = lib.licenses.mit; - maintainers = [ lib.maintainers.maralorn ]; - }) {}; - - "witch_1_1_2_0" = callPackage - ({ mkDerivation, base, bytestring, containers, HUnit, tagged - , template-haskell, text, time, transformers - }: - mkDerivation { - pname = "witch"; - version = "1.1.2.0"; - sha256 = "1ahikszzypycjilz0749wwcfppk8xdc1n4q97nxbf33h13jpaxax"; + version = "1.1.5.0"; + sha256 = "1lg3kdy18d1cabb39hrj7k9s4ryc1bfrx6ln5k3j640ankdv1asj"; libraryHaskellDepends = [ base bytestring containers tagged template-haskell text time ]; @@ -308693,7 +307010,6 @@ self: { ]; description = "Convert values from one type into another"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -308821,8 +307137,6 @@ self: { libraryHaskellDepends = [ base constraints containers countable ]; description = "values that witness types"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "witty" = callPackage @@ -308973,6 +307287,8 @@ self: { ]; description = "Wadler/Leijen pretty printer supporting colorful console output"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "wl-pprint-extras" = callPackage @@ -309717,6 +308033,8 @@ self: { ]; description = "LOGO-like Turtle graphics with a monadic interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "wp-archivebot" = callPackage @@ -309765,8 +308083,8 @@ self: { pname = "wrapped"; version = "0.1.0.1"; sha256 = "00fvammhn4dlna5d1dc8lpwrdrigj9cnlyi8scwslibr6bjsjzfp"; - revision = "3"; - editedCabalFile = "1z7p0kx98yn3jwpghhs1360r4pvrg1vvj66p8w6npvbb5nv6z99j"; + revision = "4"; + editedCabalFile = "103b654pm0figxqjb6bchi975q2rf0r7y2zhygic86j2089k3fcl"; libraryHaskellDepends = [ base ]; description = "Newtypes to carry DerivingVia instances"; license = lib.licenses.asl20; @@ -309778,8 +308096,8 @@ self: { pname = "wrapped-generic-default"; version = "0.1.0.1"; sha256 = "10hbz8m98cw8lr2xj0wkc017pnypagb11ss1ihpp6lnc4w1hpj3f"; - revision = "3"; - editedCabalFile = "0hax0aq1sbjhmr62y9wf04k9c0zd3vj1drk3dkmlvbxmnxhdix87"; + revision = "4"; + editedCabalFile = "1zyrdx018xz6xqpw0x3nz98nx9zw4kpr5l8c1q3fdk9jw2afa5sq"; libraryHaskellDepends = [ base data-default-class wrapped ]; description = "A Generic instance of Default"; license = lib.licenses.asl20; @@ -310322,7 +308640,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "wsjtx-dump-udp"; - broken = true; }) {}; "wss-client" = callPackage @@ -310341,6 +308658,8 @@ self: { testHaskellDepends = [ base bytestring envy hspec skews text ]; description = "A-little-higher-level WebSocket client"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "wstunnel" = callPackage @@ -310436,6 +308755,7 @@ self: { ]; description = "Code for the dice chain problem"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wumpus-basic" = callPackage @@ -311959,8 +310279,8 @@ self: { }: mkDerivation { pname = "xml-parser"; - version = "0.1.1"; - sha256 = "06a8pci3jr3mdrsh8708i61rqd2rsgqyf86s269ycca6xlbrgwzh"; + version = "0.1.1.1"; + sha256 = "13af7yfxn1m7clhzxsbkd6q1nr8dslv39w4hvyhca0l7adplyyw3"; libraryHaskellDepends = [ attoparsec base bytestring containers hashable text text-builder transformers unordered-containers xml-conduit @@ -312040,7 +310360,9 @@ self: { benchmarkHaskellDepends = [ base gauge protolude ]; description = "XML pretty printer"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; mainProgram = "xml-prettify"; + broken = true; }) {}; "xml-push" = callPackage @@ -312135,6 +310457,8 @@ self: { ]; description = "Parse XML from bytes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "xml-to-json" = callPackage @@ -312304,17 +310628,18 @@ self: { }) {}; "xmlbf" = callPackage - ({ mkDerivation, base, bytestring, containers, deepseq, QuickCheck - , quickcheck-instances, selective, tasty, tasty-hunit - , tasty-quickcheck, text, transformers, unordered-containers + ({ mkDerivation, base, bytestring, containers, deepseq, exceptions + , mmorph, mtl, QuickCheck, quickcheck-instances, selective, tasty + , tasty-hunit, tasty-quickcheck, text, transformers + , unordered-containers }: mkDerivation { pname = "xmlbf"; - version = "0.6.1"; - sha256 = "0xhpg10bqmv9cd4sw0vf2vvvyyas3xd36lwarbh5l78hylmibnlf"; + version = "0.7"; + sha256 = "0zqim6cz8wlvhzxpk5q8wk69a6vm4z9j0pyr1jkhd495gphzkysy"; libraryHaskellDepends = [ - base bytestring containers deepseq selective text transformers - unordered-containers + base bytestring containers deepseq exceptions mmorph mtl selective + text transformers unordered-containers ]; testHaskellDepends = [ base bytestring QuickCheck quickcheck-instances tasty tasty-hunit @@ -312325,42 +310650,38 @@ self: { }) {}; "xmlbf-xeno" = callPackage - ({ mkDerivation, base, bytestring, html-entities, QuickCheck - , quickcheck-instances, tasty, tasty-hunit, tasty-quickcheck, text - , unordered-containers, xeno, xmlbf + ({ mkDerivation, base, bytestring, criterion, deepseq, ghc-prim + , html-entities, tasty, tasty-hunit, text, unordered-containers + , xeno, xml, xmlbf }: mkDerivation { pname = "xmlbf-xeno"; - version = "0.2"; - sha256 = "1x33885kjddmc39p2jxafypcgpm5fajdxzdd6l9z5bpihlpgk7ig"; + version = "0.2.2"; + sha256 = "1ls45fqyvss387mcz5gppnal9pf4kmnqd8dzr6caaxzdd5ckxi3h"; libraryHaskellDepends = [ base bytestring html-entities text unordered-containers xeno xmlbf ]; - testHaskellDepends = [ - base bytestring QuickCheck quickcheck-instances tasty tasty-hunit - tasty-quickcheck text unordered-containers xmlbf + testHaskellDepends = [ base tasty tasty-hunit xmlbf ]; + benchmarkHaskellDepends = [ + base bytestring criterion deepseq ghc-prim xml ]; description = "xeno backend support for the xmlbf library"; license = lib.licenses.asl20; }) {}; "xmlbf-xmlhtml" = callPackage - ({ mkDerivation, base, bytestring, html-entities, QuickCheck - , quickcheck-instances, tasty, tasty-hunit, tasty-quickcheck, text - , unordered-containers, xmlbf, xmlhtml + ({ mkDerivation, base, bytestring, html-entities, tasty + , tasty-hunit, text, unordered-containers, xmlbf, xmlhtml }: mkDerivation { pname = "xmlbf-xmlhtml"; - version = "0.2"; - sha256 = "1h2w98jdr3r9isbl5g39gd3fxlm4vqib15grqgarhx2gj1k9vlxd"; + version = "0.2.2"; + sha256 = "0d93ywr70qmjd2yd33b5k8b5n1l01cj1clbm93hq6sfjjnw4cyi0"; libraryHaskellDepends = [ base bytestring html-entities text unordered-containers xmlbf xmlhtml ]; - testHaskellDepends = [ - base bytestring QuickCheck quickcheck-instances tasty tasty-hunit - tasty-quickcheck text unordered-containers xmlbf - ]; + testHaskellDepends = [ base tasty tasty-hunit xmlbf ]; description = "xmlhtml backend support for the xmlbf library"; license = lib.licenses.asl20; }) {}; @@ -312395,10 +310716,8 @@ self: { }: mkDerivation { pname = "xmlhtml"; - version = "0.2.5.2"; - sha256 = "1p2v1cj9jjwbqyb0fyv2201zd7ljz5d46qg5kwy7rz2bchbqd0b4"; - revision = "4"; - editedCabalFile = "1q4f9pvyrkrw793kvd1lxzpzf49h2rs8zdmmhsli487sllflghnq"; + version = "0.2.5.3"; + sha256 = "0nvwrl4cw7hfsbndmxdmzs3cs35hs01bja6hrjrc8fairaaif2rf"; libraryHaskellDepends = [ base blaze-builder blaze-html blaze-markup bytestring bytestring-builder containers parsec text unordered-containers @@ -312543,7 +310862,10 @@ self: { description = "A tiling window manager"; license = lib.licenses.bsd3; mainProgram = "xmonad"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.dschrempf lib.maintainers.ivanbrennan + lib.maintainers.peti + ]; }) {}; "xmonad-bluetilebranch" = callPackage @@ -312589,7 +310911,10 @@ self: { ]; description = "Community-maintained extensions for xmonad"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.dschrempf lib.maintainers.ivanbrennan + lib.maintainers.peti + ]; }) {}; "xmonad-contrib-bluetilebranch" = callPackage @@ -312985,7 +311310,6 @@ self: { description = "Data types for programs for xournal file format"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "xpathdsv" = callPackage @@ -313041,7 +311365,6 @@ self: { license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; mainProgram = "xrefcheck"; - broken = true; }) {}; "xsact" = callPackage @@ -313089,6 +311412,8 @@ self: { libraryHaskellDepends = [ base HUnit QuickCheck uniplate vector ]; description = "cryptanalysis of Blizzard's broken SHA-1 implementation"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "xslt" = callPackage @@ -313111,10 +311436,8 @@ self: { }: mkDerivation { pname = "xss-sanitize"; - version = "0.3.7"; - sha256 = "1wnzx5nv8p4ppphcvjp6x8wna0kpw9jn85gn1qbhjqhrl5nqy1vw"; - revision = "1"; - editedCabalFile = "15kd3yxs219g4rxnq7qlr2zhjv930b33aynq0nbzhw94bff6qb66"; + version = "0.3.7.1"; + sha256 = "1lmmyh28mb1k44m63m7qx6iy4x2fgqq5srmky47dsm0fby9iag1h"; libraryHaskellDepends = [ attoparsec base containers css-text network-uri tagsoup text utf8-string @@ -313158,8 +311481,6 @@ self: { ]; description = "Automatic generation of XStaticFile"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "xtc" = callPackage @@ -313200,8 +311521,6 @@ self: { ]; description = "turtle like LOGO"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "xxhash" = callPackage @@ -313219,6 +311538,8 @@ self: { ]; description = "A Haskell implementation of the xxHash algorithm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "xxhash-ffi" = callPackage @@ -313965,8 +312286,6 @@ self: { ]; description = "Flexible declarative YAML parsing toolkit"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yaml2owl" = callPackage @@ -314033,8 +312352,8 @@ self: { pname = "yampa-canvas"; version = "0.2.3"; sha256 = "0a1pq1psmc4490isr19z4prnqq1w3374vkfmzpw9s20s2p6k5y7r"; - revision = "8"; - editedCabalFile = "1lnvj9fgwb11my92sk1k0kws3aan6d9r2airpfviv5b9bb0ylpqm"; + revision = "9"; + editedCabalFile = "0cl5bnki5a5dfr6jv5957c7svvgnvgf5zr6c6adha639z98l1fmq"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base blank-canvas stm time Yampa ]; @@ -314122,8 +312441,8 @@ self: { }: mkDerivation { pname = "yampa-test"; - version = "0.13.7"; - sha256 = "04i1rzbc8v60s1qdnz42g8anm2xc6w28i47jkakqlpxlcii3zlcy"; + version = "0.14"; + sha256 = "1w2p15j1fh2xv460xc40w7li2mvv4nwqqys1xhr9zpby2cdkc39h"; libraryHaskellDepends = [ base normaldistribution QuickCheck Yampa ]; @@ -314237,8 +312556,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ]; description = "Yet another records libraries"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yarn-lock" = callPackage @@ -314296,7 +312613,9 @@ self: { ]; description = "Convert yarn.lock files to nix expressions"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; + broken = true; }) {}; "yarr" = callPackage @@ -314350,7 +312669,6 @@ self: { description = "Yet another string interpolator"; license = lib.licenses.cc0; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yate" = callPackage @@ -315060,25 +313378,35 @@ self: { "yesod-auth-lti13" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, base64-bytestring - , bytestring, containers, cryptonite, http-client, http-conduit - , jose-jwt, load-env, lti13, microlens, oidc-client - , safe-exceptions, text, time, warp, yesod, yesod-auth, yesod-core + , bytestring, containers, cryptonite, data-default, file-embed + , hspec, hspec-discover, http-client, http-conduit, http-types + , jose-jwt, load-env, lti13, microlens, mtl, oidc-client + , QuickCheck, template-haskell, text, th-utilities, time + , transformers, unliftio, wai, warp, yesod, yesod-auth, yesod-core + , yesod-test }: mkDerivation { pname = "yesod-auth-lti13"; - version = "0.2.0.3"; - sha256 = "06xlpdirr7s4l9a9sxydn7vj0z9dy600yn6nmccv042awkdg5l0f"; + version = "0.3.0.0"; + sha256 = "1mi8fvynayw1wf17mrk11vdisi7r585bf8v0d73x7yq3f1b43qfa"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-pretty base base64-bytestring bytestring containers - cryptonite http-client http-conduit jose-jwt load-env lti13 - microlens oidc-client safe-exceptions text time warp yesod + cryptonite http-client http-conduit http-types jose-jwt load-env + lti13 microlens oidc-client text time unliftio warp yesod yesod-auth yesod-core ]; + testHaskellDepends = [ + aeson aeson-pretty base base64-bytestring bytestring containers + cryptonite data-default file-embed hspec http-client http-conduit + http-types jose-jwt load-env lti13 microlens mtl oidc-client + QuickCheck template-haskell text th-utilities time transformers + unliftio wai warp yesod yesod-auth yesod-core yesod-test + ]; + testToolDepends = [ hspec-discover ]; description = "A yesod-auth plugin for LTI 1.3"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "yesod-auth-nopassword" = callPackage @@ -315105,16 +313433,14 @@ self: { }: mkDerivation { pname = "yesod-auth-oauth"; - version = "1.6.0.3"; - sha256 = "0y57d5y0l0fzmk6zxrpf2xf8y00hp2i0lk3xh5sqlb77a57r109s"; + version = "1.6.1"; + sha256 = "0gyjcrm8yhqd2zripv050p0jnlxl88czbqar2crr4gxq8na5pn20"; libraryHaskellDepends = [ authenticate-oauth base bytestring text unliftio yesod-auth yesod-core yesod-form ]; description = "OAuth Authentication for Yesod"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yesod-auth-oauth2" = callPackage @@ -316088,6 +314414,8 @@ self: { ]; description = "A middleware for building CSP headers on the fly"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yesod-newsfeed" = callPackage @@ -317062,7 +315390,6 @@ self: { description = "Yi editor core library"; license = lib.licenses.gpl2Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yi-dynamic-configuration" = callPackage @@ -317091,6 +315418,7 @@ self: { libraryHaskellDepends = [ base containers split yi-language ]; description = "Simple mapping from colour names used in emacs to Color"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; }) {}; "yi-frontend-pango" = callPackage @@ -317268,6 +315596,8 @@ self: { ]; description = "Collection of language-related Yi libraries"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yi-misc-modes" = callPackage @@ -317567,6 +315897,8 @@ self: { libraryHaskellDepends = [ base free mtl ]; description = "A truly tiny monadic parsing library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yoda" = callPackage @@ -317639,6 +315971,8 @@ self: { executableHaskellDepends = [ base bytestring process utility-ht ]; description = "Upload video to YouTube via YouTube API"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yql" = callPackage @@ -318030,8 +316364,8 @@ self: { }: mkDerivation { pname = "zenacy-html"; - version = "2.0.4"; - sha256 = "05jy3w7a94ns52w4a1p6xhcph09p2zzqmvncf47db9wwq6xl5ad2"; + version = "2.0.7"; + sha256 = "1468haqjgmnh6drf5cfk42v0x80pr3a9asap8l6m1l4pwy531wkh"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -318062,8 +316396,8 @@ self: { }: mkDerivation { pname = "zenacy-unicode"; - version = "1.0.1"; - sha256 = "1l03zr1j6h1h15rnz6mk731g5ib1h3x59b3aqm30i0kd2h28g0vw"; + version = "1.0.2"; + sha256 = "0v9zsiqm07gmyqa3c3caak2lfi8z499xmj0xa3lyx8s2nd6aficn"; libraryHaskellDepends = [ base bytestring vector word8 ]; testHaskellDepends = [ base bytestring HUnit test-framework test-framework-hunit text @@ -318212,8 +316546,8 @@ self: { }: mkDerivation { pname = "zephyr-copilot"; - version = "1.0.4"; - sha256 = "112xjv3lmnnxi6imwj9p0i2nn0gbc6dgai0yq8kc6iy1qpg478w5"; + version = "1.0.5"; + sha256 = "1fc58cq0dgzqfy84z8mbana8lisnc2df7k7jhramafpl7qgkp9q4"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language directory filepath mtl optparse-applicative sketch-frp-copilot temporary @@ -318233,6 +316567,8 @@ self: { libraryHaskellDepends = [ base semigroups ]; description = "Semigroups with absorption"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "zerobin" = callPackage @@ -318254,6 +316590,7 @@ self: { ]; description = "Post to 0bin services"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "zerobin"; }) {}; @@ -318315,6 +316652,7 @@ self: { description = "Bindings to ZeroMQ 3.x"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) zeromq;}; "zeromq4-clone-pattern" = callPackage @@ -318773,24 +317111,26 @@ self: { "zip-stream" = callPackage ({ mkDerivation, base, binary, binary-conduit, bytestring, conduit - , conduit-extra, digest, directory, exceptions, filepath, mtl - , primitive, resourcet, text, time, transformers, transformers-base - , zlib + , conduit-extra, deepseq, digest, directory, exceptions, filepath + , hspec, mtl, primitive, resourcet, text, time, transformers + , transformers-base, zlib }: mkDerivation { pname = "zip-stream"; - version = "0.2.1.0"; - sha256 = "0fx8kj0ijm3555grhdns7agmi084584fh1v0mvkm4x696h1zzvli"; + version = "0.2.2.0"; + sha256 = "1z9q6j5zh4crvgk4v2p9s6qww74ifmcj7ngxxkpnkv8h81xjcdjk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base binary binary-conduit bytestring conduit conduit-extra digest - exceptions mtl primitive resourcet text time transformers-base zlib + base binary binary-conduit bytestring conduit conduit-extra deepseq + digest exceptions mtl primitive resourcet text time + transformers-base zlib ]; executableHaskellDepends = [ base bytestring conduit conduit-extra directory filepath resourcet text time transformers ]; + testHaskellDepends = [ base bytestring conduit hspec text time ]; description = "ZIP archive streaming using conduits"; license = lib.licenses.bsd3; }) {}; @@ -319010,6 +317350,8 @@ self: { libraryHaskellDepends = [ base bytestring profunctors zlib ]; description = "Lenses for zlib"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "zm" = callPackage @@ -319033,7 +317375,6 @@ self: { description = "Language independent, reproducible, absolute types"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "zmcat" = callPackage @@ -319226,8 +317567,8 @@ self: { }: mkDerivation { pname = "zoovisitor"; - version = "0.2.1.0"; - sha256 = "1vh20sjq305f7nkphprqby19cbd7w395yixq92w3mplsz9cx6h0n"; + version = "0.2.1.1"; + sha256 = "02hhscjj1rql1xn08x1dh5lppsvrs059wh2psxz5i2glwc7jgd9a"; libraryHaskellDepends = [ base Z-Data Z-IO ]; librarySystemDepends = [ zookeeper_mt ]; testHaskellDepends = [ async base hspec uuid Z-Data ]; @@ -319459,7 +317800,9 @@ self: { testHaskellDepends = [ aeson base bytestring tasty tasty-hunit ]; description = "A zuul client library"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; mainProgram = "zuul-cli"; + broken = true; }) {}; "zxcvbn-c" = callPackage diff --git a/pkgs/development/haskell-modules/make-package-set.nix b/pkgs/development/haskell-modules/make-package-set.nix index 8bf78dadc8ee4..5b9546e7505fa 100644 --- a/pkgs/development/haskell-modules/make-package-set.nix +++ b/pkgs/development/haskell-modules/make-package-set.nix @@ -93,8 +93,9 @@ let # Converts a returned function to a functor attribute set if necessary ensureAttrs = v: if builtins.isFunction v then { __functor = _: v; } else v; - # this wraps the `drv` function to add a `overrideScope` function to the result. + # this wraps the `drv` function to add `scope` and `overrideScope` to the result. drvScope = allArgs: ensureAttrs (drv allArgs) // { + inherit scope; overrideScope = f: let newScope = mkScope (fix' (extends f scope.__unfix__)); # note that we have to be careful here: `allArgs` includes the auto-arguments that diff --git a/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch b/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch new file mode 100644 index 0000000000000..c1e1663627f7e --- /dev/null +++ b/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch @@ -0,0 +1,54 @@ +From 0cc6f0f8de1776d0b5851459d22a0997dfd735ce Mon Sep 17 00:00:00 2001 +From: Oleg Grenrus <oleg.grenrus@iki.fi> +Date: Wed, 25 May 2022 14:09:49 +0300 +Subject: [PATCH] Use ShellCheck-0.8.0 and optparse-applicative-0.17 + +Adapted from 0cc6f0f8de1776d0b5851459d22a0997dfd735ce to apply on top of +haskell-ci-0.14.3. + +Co-Authored-By: sternenseemann <sternenseemann@systemli.org> + +--- + haskell-ci.cabal | 4 ++-- + src/HaskellCI/GitHub.hs | 7 ++++--- + 2 files changed, 7 insertions(+), 6 deletions(-) + +diff --git a/haskell-ci.cabal b/haskell-ci.cabal +index 273bd422..6848402c 100644 +--- a/haskell-ci.cabal ++++ b/haskell-ci.cabal +@@ -167,14 +167,14 @@ library haskell-ci-internal + , ini ^>=0.4.1 + , lattices ^>=2 + , network-uri ^>=2.6.1.0 +- , optparse-applicative ^>=0.16.1.0 ++ , optparse-applicative ^>=0.17.0.0 + , temporary ^>=1.3 + , unordered-containers ^>=0.2.10.0 + , zinza ^>=0.2 + + -- ShellCheck. Would need newer transformers for older GHC + if flag(shellcheck) +- build-depends: ShellCheck ==0.7.2 ++ build-depends: ShellCheck ==0.8.0 + + executable haskell-ci + main-is: Main.hs +diff --git a/src/HaskellCI/GitHub.hs b/src/HaskellCI/GitHub.hs +index f1a402e6..a2c6e4f6 100644 +--- a/src/HaskellCI/GitHub.hs ++++ b/src/HaskellCI/GitHub.hs +@@ -653,9 +653,10 @@ makeGitHub _argv config@Config {..} gitconfig prj jobs@JobVersions {..} = do + setup hvrppa ghcup + | allGHCUP = traverse_ liftSh ghcup + | not anyGHCUP = traverse_ liftSh hvrppa +- -- 2192: ${{ ...}} will match (ShellCheck think it doesn't) +- -- 2129: individual redirects +- | otherwise = sh' [2193, 2129] $ unlines $ ++ -- SC2192: ${{ ...}} will match (ShellCheck think it doesn't) ++ -- SC2129: individual redirects ++ -- SC2296: Parameter expansions can't start with {. Double check syntax. -- ${{ }} in YAML templating. ++ | otherwise = sh' [2193, 2129, 2296] $ unlines $ + [ "if [ \"${{ matrix.setup-method }}\" = ghcup ]; then" + ] ++ + [ " " ++ shToString s diff --git a/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch b/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch deleted file mode 100644 index 87a112b821738..0000000000000 --- a/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch +++ /dev/null @@ -1,95 +0,0 @@ -diff --git a/lambdabot-core.cabal b/lambdabot-core.cabal -index 861a28b..87175a3 100644 ---- a/lambdabot-core.cabal -+++ b/lambdabot-core.cabal -@@ -19,7 +19,7 @@ homepage: https://wiki.haskell.org/Lambdabot - - build-type: Simple - cabal-version: >= 1.10 --tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4 -+tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4, GHC == 9.0.2 - - extra-source-files: AUTHORS.md - COMMENTARY.md -@@ -89,9 +89,8 @@ library - network-bsd >= 2.7 && < 2.9, - parsec >= 3, - prim-uniq >= 0.2 && < 0.4, -- random >= 1, -- random-fu >= 0.2.6.2, -- random-source >= 0.3, -+ random >= 1.2, -+ random-fu >= 0.3.0.0, - regex-tdfa >= 1.1 && < 1.4, - SafeSemaphore >= 0.9, - split >= 0.2, -diff --git a/src/Lambdabot/Bot.hs b/src/Lambdabot/Bot.hs -index 1b0de2e..833fb4c 100644 ---- a/src/Lambdabot/Bot.hs -+++ b/src/Lambdabot/Bot.hs -@@ -1,6 +1,5 @@ - {-# LANGUAGE GADTs #-} - {-# LANGUAGE ScopedTypeVariables #-} --{-# LANGUAGE TemplateHaskell #-} - -- | The guts of lambdabot. - -- - -- The LB/Lambdabot monad -@@ -37,7 +36,6 @@ import Control.Monad.Error - import Control.Monad.Reader - import Control.Monad.State - import qualified Data.Map as M --import Data.Random.Source - import qualified Data.Set as S - - ------------------------------------------------------------------------ -@@ -136,17 +134,3 @@ ircPrivmsg who msg = do - ircPrivmsg' :: Nick -> String -> LB () - ircPrivmsg' who "" = ircPrivmsg' who " " - ircPrivmsg' who msg = send $ privmsg who msg -- -------------------------------------------------------------------------- -- --monadRandom [d| -- -- instance MonadRandom LB where -- getRandomWord8 = liftIO getRandomWord8 -- getRandomWord16 = liftIO getRandomWord16 -- getRandomWord32 = liftIO getRandomWord32 -- getRandomWord64 = liftIO getRandomWord64 -- getRandomDouble = liftIO getRandomDouble -- getRandomNByteInteger n = liftIO (getRandomNByteInteger n) -- -- |] -diff --git a/src/Lambdabot/Util.hs b/src/Lambdabot/Util.hs -index effdf71..259699b 100644 ---- a/src/Lambdabot/Util.hs -+++ b/src/Lambdabot/Util.hs -@@ -23,14 +23,15 @@ module Lambdabot.Util ( - randomSuccessMsg - ) where - -+import Control.Concurrent.Lifted - import Control.Monad.Trans -+import Control.Monad.Trans.Control - import Data.Char - import Data.List - import Data.Random --import Control.Concurrent.Lifted --import Control.Monad.Trans.Control - import Lambdabot.Config - import Lambdabot.Config.Core -+import System.Random.Stateful (newIOGenM, newStdGen) - - ------------------------------------------------------------------------ - -@@ -63,7 +64,9 @@ listToStr conj (item:items) = - - -- | Pick a random element of the list. - random :: MonadIO m => [a] -> m a --random = io . sample . randomElement -+random l = do -+ g <- newIOGenM =<< newStdGen -+ sampleFrom g (randomElement l) - - ------------------------------------------------------------------------ - diff --git a/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch b/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch deleted file mode 100644 index 009951f90e07a..0000000000000 --- a/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch +++ /dev/null @@ -1,58 +0,0 @@ -diff --git a/lambdabot-novelty-plugins.cabal b/lambdabot-novelty-plugins.cabal -index 69c8447..50a35f6 100644 ---- a/lambdabot-novelty-plugins.cabal -+++ b/lambdabot-novelty-plugins.cabal -@@ -36,7 +36,7 @@ homepage: https://wiki.haskell.org/Lambdabot - - build-type: Simple - cabal-version: >= 1.10 --tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4 -+tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4, GHC == 9.0.2 - - source-repository head - type: git -@@ -71,7 +71,8 @@ library - lambdabot-core >= 5.3 && < 5.4, - misfortune >= 0.1, - process >= 1.1, -- random-fu >= 0.2.6.2, -+ random >= 1.2, -+ random-fu >= 0.3.0.0, - regex-tdfa >= 1.1, - - -- runtime dependencies -diff --git a/src/Lambdabot/Plugin/Novelty/Numberwang.hs b/src/Lambdabot/Plugin/Novelty/Numberwang.hs -index ae41eb4..8321a14 100644 ---- a/src/Lambdabot/Plugin/Novelty/Numberwang.hs -+++ b/src/Lambdabot/Plugin/Novelty/Numberwang.hs -@@ -7,7 +7,9 @@ import Control.Monad - import Data.Random - import Data.Random.Distribution.Poisson - import Lambdabot.Plugin -+import Lambdabot.Util - import Numeric -+import System.Random.Stateful (newIOGenM, newStdGen) - - - data NumberwangState = State -@@ -23,7 +25,9 @@ conDist = poisson (32 :: Double) - - numberwangPlugin :: Module NumberwangState - numberwangPlugin = newModule -- { moduleDefState = sample (State <$> cmdDist <*> conDist) -+ { moduleDefState = do -+ g <- newIOGenM =<< newStdGen -+ sampleFrom g (State <$> cmdDist <*> conDist) - , moduleCmds = return - [ (command "numberwang") - { help = say "@numberwang <number>: Determines if it is Numberwang." -@@ -61,7 +65,8 @@ checkNumberwang :: (MonadLBState m, LBState m ~ NumberwangState) => - checkNumberwang cmd l = withState cmd $ \ n setN nDist -> do - if n <= l - then do -- setN =<< lb (sample nDist) -+ g <- newIOGenM =<< newStdGen -+ setN =<< sampleFrom g nDist - return True - else do - setN (n - l) diff --git a/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch b/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch new file mode 100644 index 0000000000000..f72b8483b339e --- /dev/null +++ b/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch @@ -0,0 +1,52 @@ +diff -rN -u old-mbox/Data/MBox/String.hs new-mbox/Data/MBox/String.hs +--- old-mbox/Data/MBox/String.hs 2022-11-22 19:14:52.332543098 +0100 ++++ new-mbox/Data/MBox/String.hs 2022-11-22 19:14:52.332543098 +0100 +@@ -1,3 +1,4 @@ ++{-# LANGUAGE CPP #-} + + ----------------------------------------------------------------------------- + {- | +@@ -31,7 +32,11 @@ + -- | Reads a date header as a UTCTime + parseDateHeader :: String -> Maybe UTCTime + parseDateHeader header = listToMaybe . catMaybes $ map tryParse formats where ++#if MIN_VERSION_time(1,9,0) ++ tryParse f = parseTimeM True LC.defaultTimeLocale f header ++#else + tryParse f = parseTime LC.defaultTimeLocale f header ++#endif + formats = + [ "%a, %_d %b %Y %T %z" + , "%a, %_d %b %Y %T %Z" +diff -rN -u old-mbox/Data/MBox.hs new-mbox/Data/MBox.hs +--- old-mbox/Data/MBox.hs 2022-11-22 19:14:52.332543098 +0100 ++++ new-mbox/Data/MBox.hs 2022-11-22 19:14:52.332543098 +0100 +@@ -1,3 +1,4 @@ ++{-# LANGUAGE CPP #-} + {-# LANGUAGE ViewPatterns #-} + + ----------------------------------------------------------------------------- +@@ -34,7 +35,11 @@ + parseDateHeader :: T.Text -> Maybe UTCTime + parseDateHeader txt = listToMaybe . catMaybes $ map tryParse formats where + header = T.unpack txt ++#if MIN_VERSION_time(1,9,0) ++ tryParse f = parseTimeM True LC.defaultTimeLocale f header ++#else + tryParse f = parseTime LC.defaultTimeLocale f header ++#endif + formats = + [ "%a, %_d %b %Y %T %z" + , "%a, %_d %b %Y %T %Z" +diff -rN -u old-mbox/mbox.cabal new-mbox/mbox.cabal +--- old-mbox/mbox.cabal 2022-11-22 19:14:52.332543098 +0100 ++++ new-mbox/mbox.cabal 2022-11-22 19:14:52.332543098 +0100 +@@ -13,7 +13,7 @@ + Cabal-Version: >= 1.6 + + library +- build-depends: base >= 4, base < 6, safe, time < 1.9, time-locale-compat, text ++ build-depends: base >= 4, base < 6, safe, time, time-locale-compat, text + exposed-modules: Data.MBox, Data.MBox.String + ghc-options: -Wall + diff --git a/pkgs/development/interpreters/bqn/cbqn/default.nix b/pkgs/development/interpreters/bqn/cbqn/default.nix index 1766c45995a37..6e4c18c961eff 100644 --- a/pkgs/development/interpreters/bqn/cbqn/default.nix +++ b/pkgs/development/interpreters/bqn/cbqn/default.nix @@ -4,11 +4,13 @@ , genBytecode ? false , bqn-path ? null , mbqn-source ? null +, enableReplxx ? false , libffi , pkg-config }: let + # TODO: these submodules should be separated libraries cbqn-bytecode-files = fetchFromGitHub { name = "cbqn-bytecode-files"; owner = "dzaima"; @@ -16,6 +18,13 @@ let rev = "3df8ae563a626ff7ae0683643092f0c3bc2481e5"; hash = "sha256:0rh9qp1bdm9aa77l0kn9n4jdy08gl6l7898lncskxiq9id6xvyb8"; }; + replxx-submodule = fetchFromGitHub { + name = "replxx-submodule"; + owner = "dzaima"; + repo = "replxx"; + rev = "ba94c293caad52486df8712e808783df9a8f4501"; + hash = "sha256-pMLvURksj/5k5b6BTwWxjomoROMOE5+GRjyaoqu/iYE="; + }; in assert genBytecode -> ((bqn-path != null) && (mbqn-source != null)); @@ -26,8 +35,8 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "dzaima"; repo = "CBQN"; - rev = "dbc7c83f7085d05e87721bedf1ee38931f671a8e"; - hash = "sha256:0nal1fs9y7nyx4d5q1qw868lxk7mivzw2y16wc3hw97pq4qf0dpb"; + rev = "49c0d9a355698f54fff2c0caa177e2b341fabb45"; + hash = "sha256-jm2ZzFxhr9o4nFR2rjYJz/4GH+WFnfU4QDovrOPI3jQ="; }; nativeBuildInputs = [ @@ -47,7 +56,8 @@ stdenv.mkDerivation rec { makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" - ]; + ] + ++ lib.optional enableReplxx "REPLXX=1"; preBuild = '' # Purity: avoids git downloading bytecode files @@ -56,7 +66,15 @@ stdenv.mkDerivation rec { ${bqn-path} ./build/genRuntime ${mbqn-source} build/bytecodeLocal/ '' else '' cp ${cbqn-bytecode-files}/src/gen/{compiles,explain,formatter,runtime0,runtime1,src} build/bytecodeLocal/gen/ - ''); + '') + + lib.optionalString enableReplxx '' + cp -r ${replxx-submodule} build/replxxLocal/ + '' + # Need to adjust ld flags for darwin manually + # https://github.com/dzaima/CBQN/issues/26 + + lib.optionalString stdenv.hostPlatform.isDarwin '' + makeFlagsArray+=(LD_LIBS="-ldl -lffi") + ''; installPhase = '' runHook preInstall diff --git a/pkgs/development/interpreters/erlang/R23.nix b/pkgs/development/interpreters/erlang/R23.nix index af767bf9f494c..89faebdde1284 100644 --- a/pkgs/development/interpreters/erlang/R23.nix +++ b/pkgs/development/interpreters/erlang/R23.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "23.3.4.17"; - sha256 = "sha256-GJicQqQbtD/eG/1t9C/l3hVsRV8fJOgaSCU0/kSHZLY="; + version = "23.3.4.18"; + sha256 = "sha256-sxNVu/52kOMFKQYPLi5uXnR1mYTF2KlHUo4T7kh0KoY="; } diff --git a/pkgs/development/interpreters/erlang/R24.nix b/pkgs/development/interpreters/erlang/R24.nix index 2dea38b77d989..dc572a2023cd8 100644 --- a/pkgs/development/interpreters/erlang/R24.nix +++ b/pkgs/development/interpreters/erlang/R24.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "24.3.4.5"; - sha256 = "sha256-MGmuge79Dh/HXF+tkvubM979K0At5v1B1RhM5Koy8oY="; + version = "24.3.4.6"; + sha256 = "sha256-mQbWiHWz4sz4H1cqkhYM8GHe278ylI7VC5zuLBxUsJc="; } diff --git a/pkgs/development/interpreters/erlang/R25.nix b/pkgs/development/interpreters/erlang/R25.nix index 885dd13efef79..0f2dff14fcef0 100644 --- a/pkgs/development/interpreters/erlang/R25.nix +++ b/pkgs/development/interpreters/erlang/R25.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "25.1.2"; - sha256 = "0fn6zyqrgyiznyghkhygak524f3clc3kz91rarq8cqn3r920dmg9"; + version = "25.2"; + sha256 = "zZ6i0NIftTcjzB5J51Q16GmVPlc5gPnGfo6EoBT2HY0="; } diff --git a/pkgs/development/libraries/apache-activemq/default.nix b/pkgs/development/libraries/apache-activemq/default.nix index fd2ba8bc73928..9b19625016296 100644 --- a/pkgs/development/libraries/apache-activemq/default.nix +++ b/pkgs/development/libraries/apache-activemq/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "apache-activemq"; - version = "5.17.2"; + version = "5.17.3"; src = fetchurl { - sha256 = "sha256-QhY4ckDvOOkS+IFixS4mEo8PctFZEIUtEusKeEWBkZU="; + sha256 = "sha256-pMxMOi8TZwfCxpbzuz7iqG2+/xueteI3sU7cDF5aMo8="; url = "mirror://apache/activemq/${version}/${pname}-${version}-bin.tar.gz"; }; diff --git a/pkgs/development/libraries/arrow-cpp/default.nix b/pkgs/development/libraries/arrow-cpp/default.nix index 81e5763aa3ebb..f5e88b1203acd 100644 --- a/pkgs/development/libraries/arrow-cpp/default.nix +++ b/pkgs/development/libraries/arrow-cpp/default.nix @@ -206,7 +206,7 @@ stdenv.mkDerivation rec { "-DCMAKE_INSTALL_RPATH=@loader_path/../lib" # needed for tools executables ] ++ lib.optional (!stdenv.isx86_64) "-DARROW_USE_SIMD=OFF" ++ lib.optional enableS3 "-DAWSSDK_CORE_HEADER_FILE=${aws-sdk-cpp}/include/aws/core/Aws.h" - ++ lib.optionals enableGcs [ "-DCMAKE_CXX_STANDARD=17" ]; + ++ lib.optionals enableGcs [ "-DCMAKE_CXX_STANDARD=${grpc.cxxStandard}" ]; doInstallCheck = true; ARROW_TEST_DATA = lib.optionalString doInstallCheck "${arrow-testing}/data"; diff --git a/pkgs/development/libraries/clutter-gst/default.nix b/pkgs/development/libraries/clutter-gst/default.nix index 71e32e074c8f6..e00cda47da6d5 100644 --- a/pkgs/development/libraries/clutter-gst/default.nix +++ b/pkgs/development/libraries/clutter-gst/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, lib, stdenv, pkg-config, clutter, gtk3, glib, cogl, gnome, gdk-pixbuf }: +{ fetchurl, fetchpatch, lib, stdenv, pkg-config, clutter, gtk3, glib, cogl, gnome, gdk-pixbuf }: stdenv.mkDerivation rec { pname = "clutter-gst"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "17czmpl92dzi4h3rn5rishk015yi3jwiw29zv8qan94xcmnbssgy"; }; + patches = [ + # Add patch from Arch Linux to fix corrupted display with Cheese + # https://gitlab.gnome.org/GNOME/cheese/-/issues/51 + # https://github.com/archlinux/svntogit-packages/tree/packages/clutter-gst/trunk + (fetchpatch { + url = "https://github.com/archlinux/svntogit-packages/raw/c4dd0bbda35aa603ee790676f6e15541f71b6d36/trunk/0001-video-sink-Remove-RGBx-BGRx-support.patch"; + sha256 = "sha256-k1fCiM/u7q81UrDYgbqhN/C+q9DVQ+qOyq6vmA3hbSQ="; + }) + ]; + propagatedBuildInputs = [ clutter gtk3 glib cogl gdk-pixbuf ]; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/libraries/fplll/default.nix b/pkgs/development/libraries/fplll/default.nix index ba461b08f9e9e..8f1bc88d7fb93 100644 --- a/pkgs/development/libraries/fplll/default.nix +++ b/pkgs/development/libraries/fplll/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "fplll"; - version = "5.4.2"; + version = "5.4.3"; src = fetchFromGitHub { owner = "fplll"; repo = "fplll"; rev = version; - sha256 = "sha256-6pzErZtT5xzCMcsNy2EwrZHiAICLrRl1dv59bp23hAA="; + sha256 = "sha256-utME3hZ3p2tx7vmp5dlAJ6J9MFEhFm/qbscGu1t9jnc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/gdcm/default.nix b/pkgs/development/libraries/gdcm/default.nix index fa475a4593ae5..b6aaa341da4da 100644 --- a/pkgs/development/libraries/gdcm/default.nix +++ b/pkgs/development/libraries/gdcm/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "gdcm"; - version = "3.0.17"; + version = "3.0.20"; src = fetchFromGitHub { owner = "malaterre"; repo = "GDCM"; rev = "v${version}"; - sha256 = "sha256-LQQBVl3DraZRnh0SXP0k1tJoKYh+t+uXd2JIerUDYlM="; + sha256 = "sha256-MaQk2VlaZxZPNzVF9pUnEzMaXyN0tq2P3kodnGpl6PA="; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/getdns/default.nix b/pkgs/development/libraries/getdns/default.nix index 3691dc164077a..00a15e831ae71 100644 --- a/pkgs/development/libraries/getdns/default.nix +++ b/pkgs/development/libraries/getdns/default.nix @@ -1,7 +1,7 @@ # Getdns and Stubby are released together, see https://getdnsapi.net/releases/ { lib, stdenv, fetchurl, cmake, darwin, doxygen, libidn2, libyaml, openssl -, systemd, unbound, yq }: +, systemd, unbound, yq, nimPackages }: let metaCommon = with lib; { maintainers = with maintainers; [ leenaars ehmry ]; @@ -38,6 +38,8 @@ in rec { postInstall = "rm -r $out/share/doc"; + passthru.tests.nim = nimPackages.getdns; + meta = with lib; metaCommon // { description = "A modern asynchronous DNS API"; diff --git a/pkgs/development/libraries/glib/default.nix b/pkgs/development/libraries/glib/default.nix index e444dcb806161..5b4b18cf91996 100644 --- a/pkgs/development/libraries/glib/default.nix +++ b/pkgs/development/libraries/glib/default.nix @@ -18,8 +18,7 @@ , coreutils, dbus, libxml2, tzdata , desktop-file-utils, shared-mime-info , darwin -# update script -, runCommand, git, coccinelle +, makeHardcodeGsettingsPatch }: assert stdenv.isLinux -> util-linuxMinimal != null; @@ -271,55 +270,18 @@ stdenv.mkDerivation (finalAttrs: { packageName = "glib"; versionPolicy = "odd-unstable"; }; - /* - can be used as part of an update script to automatically create a patch - hardcoding the path of all gsettings schemas in C code. - For example: - passthru = { - hardcodeGsettingsPatch = glib.mkHardcodeGsettingsPatch { - inherit src; - glib-schema-to-var = { - ... - }; - }; - - updateScript = - let - updateSource = ...; - patch = _experimental-update-script-combinators.copyAttrOutputToFile "evolution-ews.hardcodeGsettingsPatch" ./hardcode-gsettings.patch; - in - _experimental-update-script-combinators.sequence [ - updateSource - patch - ]; - }; - } - takes as input a mapping from schema path to variable name. - For example `{ "org.gnome.evolution" = "EVOLUTION_SCHEMA_PATH"; }` - hardcodes looking for `org.gnome.evolution` into `@EVOLUTION_SCHEMA_PATH@`. - All schemas must be listed. - */ - mkHardcodeGsettingsPatch = { src, glib-schema-to-var }: - runCommand - "hardcode-gsettings.patch" - { + + mkHardcodeGsettingsPatch = + { + src, + glib-schema-to-var, + }: + builtins.trace + "glib.mkHardcodeGsettingsPatch is deprecated, please use makeHardcodeGsettingsPatch instead" + (makeHardcodeGsettingsPatch { inherit src; - nativeBuildInputs = [ - git - coccinelle - python3 # For patch script - ]; - } - '' - unpackPhase - cd "''${sourceRoot:-.}" - set -x - cp ${builtins.toFile "glib-schema-to-var.json" (builtins.toJSON glib-schema-to-var)} ./glib-schema-to-var.json - git init - git add -A - spatch --sp-file "${./hardcode-gsettings.cocci}" --dir . --in-place - git diff > "$out" - ''; + schemaIdToVariableMapping = glib-schema-to-var; + }); }; meta = with lib; { diff --git a/pkgs/development/libraries/glib/hardcode-gsettings.cocci b/pkgs/development/libraries/glib/hardcode-gsettings.cocci deleted file mode 100644 index bedacf846bc49..0000000000000 --- a/pkgs/development/libraries/glib/hardcode-gsettings.cocci +++ /dev/null @@ -1,70 +0,0 @@ -/** - * Since Nix does not have a standard location like /usr/share, - * where GSettings system could look for schemas, we need to point the software to a correct location somehow. - * For executables, we handle this using wrappers but this is not an option for libraries like e-d-s. - * Instead, we hardcode the schema path when creating the settings. - * A schema path (ie org.gnome.evolution) can be replaced by @EVOLUTION_SCHEMA_PATH@ - * which is then replaced at build time by substituteAll. - * The mapping is provided in a json file ./glib-schema-to-var.json - */ - -@initialize:python@ -@@ -import json - -cpp_constants = {} - -def register_cpp_constant(const_name, val): - cpp_constants[const_name] = val.strip() - -def resolve_cpp_constant(const_name): - return cpp_constants.get(const_name, const_name) - -with open("./glib-schema-to-var.json") as mapping_file: - schema_to_var = json.load(mapping_file); - -def get_schema_directory(schema_path): - # Sometimes the schema id is referenced using C preprocessor #define constant in the same file - # let’s try to resolve it first. - schema_path = resolve_cpp_constant(schema_path.strip()).strip('"') - if schema_path in schema_to_var: - return f'"@{schema_to_var[schema_path]}@"' - raise Exception(f"Unknown schema path {schema_path!r}, please add it to ./glib-schema-to-var.json") - - -@find_cpp_constants@ -identifier const_name; -expression val; -@@ - -#define const_name val - -@script:python record_cpp_constants depends on find_cpp_constants@ -const_name << find_cpp_constants.const_name; -val << find_cpp_constants.val; -@@ - -register_cpp_constant(const_name, val) - - -@depends on ever record_cpp_constants || never record_cpp_constants@ -// We want to run after #define constants have been collected but even if there are no #defines. -expression SCHEMA_PATH; -expression settings; -// Coccinelle does not like autocleanup macros in + sections, -// let’s use fresh id with concatenation to produce the code as a string. -fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; -fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; -fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_PATH) { get_schema_directory(SCHEMA_PATH) }; -@@ --settings = g_settings_new(SCHEMA_PATH); -+{ -+ schema_source_decl; -+ schema_decl; -+ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, -+ g_settings_schema_source_get_default(), -+ TRUE, -+ NULL); -+ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_PATH, FALSE); -+ settings = g_settings_new_full(schema, NULL, NULL); -+} diff --git a/pkgs/development/libraries/google-cloud-cpp/default.nix b/pkgs/development/libraries/google-cloud-cpp/default.nix index 3ffaedb6b7299..be6da726456a6 100644 --- a/pkgs/development/libraries/google-cloud-cpp/default.nix +++ b/pkgs/development/libraries/google-cloud-cpp/default.nix @@ -117,7 +117,7 @@ stdenv.mkDerivation rec { # this adds a good chunk of time to the build "-DBUILD_TESTING:BOOL=ON" "-DGOOGLE_CLOUD_CPP_ENABLE_EXAMPLES:BOOL=OFF" - "-DCMAKE_CXX_STANDARD=17" + "-DCMAKE_CXX_STANDARD=${grpc.cxxStandard}" ] ++ lib.optionals (apis != [ "*" ]) [ "-DGOOGLE_CLOUD_CPP_ENABLE=${lib.concatStringsSep ";" apis}" ]; diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix index b924f3f51d345..8a3a936b14533 100644 --- a/pkgs/development/libraries/grpc/default.nix +++ b/pkgs/development/libraries/grpc/default.nix @@ -54,28 +54,18 @@ stdenv.mkDerivation rec { buildInputs = [ openssl protobuf ] ++ lib.optionals stdenv.isLinux [ libnsl ]; - cmakeFlags = - let - # Needs to be compiled with -std=c++11 for clang < 11. Interestingly this is - # only an issue with the useLLVM stdenv, not the darwin stdenv… - # https://github.com/grpc/grpc/issues/26473#issuecomment-860885484 - useLLVMAndOldCC = (stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "11.0"; - # With GCC 9 (current aarch64-linux) it fails with c++17 but OK with c++14. - useOldGCC = !(stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "10"; - cxxStandard = if useLLVMAndOldCC then "11" else if useOldGCC then "14" else "17"; - in - [ - "-DgRPC_ZLIB_PROVIDER=package" - "-DgRPC_CARES_PROVIDER=package" - "-DgRPC_RE2_PROVIDER=package" - "-DgRPC_SSL_PROVIDER=package" - "-DgRPC_PROTOBUF_PROVIDER=package" - "-DgRPC_ABSL_PROVIDER=package" - "-DBUILD_SHARED_LIBS=ON" - "-DCMAKE_CXX_STANDARD=${cxxStandard}" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-D_gRPC_PROTOBUF_PROTOC_EXECUTABLE=${buildPackages.protobuf}/bin/protoc" - ]; + cmakeFlags = [ + "-DgRPC_ZLIB_PROVIDER=package" + "-DgRPC_CARES_PROVIDER=package" + "-DgRPC_RE2_PROVIDER=package" + "-DgRPC_SSL_PROVIDER=package" + "-DgRPC_PROTOBUF_PROVIDER=package" + "-DgRPC_ABSL_PROVIDER=package" + "-DBUILD_SHARED_LIBS=ON" + "-DCMAKE_CXX_STANDARD=${passthru.cxxStandard}" + ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + "-D_gRPC_PROTOBUF_PROTOC_EXECUTABLE=${buildPackages.protobuf}/bin/protoc" + ]; # CMake creates a build directory by default, this conflicts with the # basel BUILD file on case-insensitive filesystems. @@ -97,6 +87,17 @@ stdenv.mkDerivation rec { enableParallelBuilds = true; + passthru.cxxStandard = + let + # Needs to be compiled with -std=c++11 for clang < 11. Interestingly this is + # only an issue with the useLLVM stdenv, not the darwin stdenv… + # https://github.com/grpc/grpc/issues/26473#issuecomment-860885484 + useLLVMAndOldCC = (stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "11.0"; + # With GCC 9 (current aarch64-linux) it fails with c++17 but OK with c++14. + useOldGCC = !(stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "10"; + in + (if useLLVMAndOldCC then "11" else if useOldGCC then "14" else "17"); + passthru.tests = { inherit (python3.pkgs) grpcio-status grpcio-tools; inherit arrow-cpp; diff --git a/pkgs/development/libraries/gtk/4.x.nix b/pkgs/development/libraries/gtk/4.x.nix index ac4b0b34794eb..11d00dfa1c058 100644 --- a/pkgs/development/libraries/gtk/4.x.nix +++ b/pkgs/development/libraries/gtk/4.x.nix @@ -63,7 +63,7 @@ in stdenv.mkDerivation rec { pname = "gtk4"; - version = "4.8.2"; + version = "4.8.3"; outputs = [ "out" "dev" ] ++ lib.optionals x11Support [ "devdoc" ]; outputBin = "dev"; @@ -75,7 +75,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/gtk/${lib.versions.majorMinor version}/gtk-${version}.tar.xz"; - sha256 = "hbehYLbgLq+k59OPBG+HIPq1N9P+c8AchkMzqYOmkqk="; + sha256 = "s2L5aNCFtNPZNA1NOMcGN33tnVN05pSitrfmKS48unQ="; }; depsBuildBuild = [ diff --git a/pkgs/development/libraries/gtksourceview/5.x.nix b/pkgs/development/libraries/gtksourceview/5.x.nix index 97cb693e35476..d3ac8246d95e5 100644 --- a/pkgs/development/libraries/gtksourceview/5.x.nix +++ b/pkgs/development/libraries/gtksourceview/5.x.nix @@ -86,10 +86,12 @@ stdenv.mkDerivation rec { checkPhase = '' runHook preCheck - XDG_DATA_DIRS="$XDG_DATA_DIRS:${shared-mime-info}/share" \ - xvfb-run -s '-screen 0 800x600x24' dbus-run-session \ - --config-file=${dbus}/share/dbus-1/session.conf \ - meson test --no-rebuild --print-errorlogs + env \ + XDG_DATA_DIRS="$XDG_DATA_DIRS:${shared-mime-info}/share" \ + GTK_A11Y=none \ + xvfb-run -s '-screen 0 800x600x24' dbus-run-session \ + --config-file=${dbus}/share/dbus-1/session.conf \ + meson test --no-rebuild --print-errorlogs runHook postCheck ''; diff --git a/pkgs/development/libraries/hwloc/default.nix b/pkgs/development/libraries/hwloc/default.nix index 03b640592ac90..426f87047cd66 100644 --- a/pkgs/development/libraries/hwloc/default.nix +++ b/pkgs/development/libraries/hwloc/default.nix @@ -1,14 +1,18 @@ { lib, stdenv, fetchurl, pkg-config, expat, ncurses, pciutils, numactl -, x11Support ? false, libX11, cairo +, x11Support ? false +, libX11 +, cairo +, enableCuda ? false +, cudaPackages }: stdenv.mkDerivation rec { pname = "hwloc"; - version = "2.8.0"; + version = "2.9.0"; src = fetchurl { url = "https://www.open-mpi.org/software/hwloc/v${lib.versions.majorMinor version}/downloads/hwloc-${version}.tar.bz2"; - sha256 = "sha256-NIpy/NSMMqgj7h2hSa6ZIgPnrQM1SeZK7W6m7rAfQsE="; + sha256 = "sha256-IHDpY1lqJCG5r47KQ73sET7hEHqvfMtHXU03Z6iFaIc="; }; configureFlags = [ @@ -21,7 +25,8 @@ stdenv.mkDerivation rec { buildInputs = [ expat ncurses ] ++ lib.optionals x11Support [ cairo libX11 ] - ++ lib.optionals stdenv.isLinux [ numactl ]; + ++ lib.optionals stdenv.isLinux [ numactl ] + ++ lib.optional enableCuda cudaPackages.cudatoolkit; # Since `libpci' appears in `hwloc.pc', it must be propagated. propagatedBuildInputs = lib.optional stdenv.isLinux pciutils; diff --git a/pkgs/development/libraries/icu/63.nix b/pkgs/development/libraries/icu/63.nix index 07684d8db8183..19838763f5b41 100644 --- a/pkgs/development/libraries/icu/63.nix +++ b/pkgs/development/libraries/icu/63.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchpatch, fixDarwinDylibNames, nativeBuildRoot }: +{ stdenv, lib, fetchurl, fetchpatch, fixDarwinDylibNames, nativeBuildRoot, buildRootOnly ? false }: import ./base.nix { version = "63.1"; @@ -11,4 +11,4 @@ import ./base.nix { }) ]; patchFlags = [ "-p3" ]; -} { inherit stdenv lib fetchurl fixDarwinDylibNames nativeBuildRoot; } +} { inherit stdenv lib fetchurl fixDarwinDylibNames nativeBuildRoot buildRootOnly; } diff --git a/pkgs/development/libraries/intel-gmmlib/default.nix b/pkgs/development/libraries/intel-gmmlib/default.nix index addd77288b7cf..2d10795f24e72 100644 --- a/pkgs/development/libraries/intel-gmmlib/default.nix +++ b/pkgs/development/libraries/intel-gmmlib/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "intel-gmmlib"; - version = "22.3.1"; + version = "22.3.2"; src = fetchFromGitHub { owner = "intel"; repo = "gmmlib"; rev = "intel-gmmlib-${version}"; - sha256 = "sha256-bk1yBxMrPkFnPcV5uvEmbf3X2WG6iJNbD1WNxoOSnA8="; + sha256 = "sha256-bn7Y+yre/9EkECMaYs2CR+OTZRG5pRd6LjnZD9jXvUM="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/java/jffi/default.nix b/pkgs/development/libraries/java/jffi/default.nix index ef1445da99034..aa130bc43346b 100644 --- a/pkgs/development/libraries/java/jffi/default.nix +++ b/pkgs/development/libraries/java/jffi/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "jffi"; - version = "1.3.9"; + version = "1.3.10"; src = fetchFromGitHub { owner = "jnr"; repo = "jffi"; rev = "jffi-${version}"; - sha256 = "sha256-VjZYhMbad+AesANG06umRzqMWj+Ebzu59TYK7Tm/bFo="; + sha256 = "sha256-2Y0l1bDr/f3vxwRjDX62xeC5pUmIbk4XH5prh8c91As="; }; nativeBuildInputs = [ jdk ant texinfo pkg-config ]; diff --git a/pkgs/development/libraries/jellyfin-ffmpeg/default.nix b/pkgs/development/libraries/jellyfin-ffmpeg/default.nix index 04372e647e909..b568d903def37 100644 --- a/pkgs/development/libraries/jellyfin-ffmpeg/default.nix +++ b/pkgs/development/libraries/jellyfin-ffmpeg/default.nix @@ -1,5 +1,6 @@ { ffmpeg_5-full , nv-codec-headers-11 +, chromaprint , fetchFromGitHub , lib }: @@ -17,8 +18,12 @@ sha256 = "sha256-2mSixlrTgAVD2ZRGoi1+UEbhba7QEVvKmigwC9dLk2g="; }; + buildInputs = old.buildInputs ++ [ chromaprint ]; + configureFlags = old.configureFlags ++ [ + "--extra-version=Jellyfin" "--disable-ptx-compression" # https://github.com/jellyfin/jellyfin/issues/7944#issuecomment-1156880067 + "--enable-chromaprint" ]; postPatch = '' diff --git a/pkgs/development/libraries/kirigami-addons/default.nix b/pkgs/development/libraries/kirigami-addons/default.nix index 3ccde40b751bb..fec795c5748f0 100644 --- a/pkgs/development/libraries/kirigami-addons/default.nix +++ b/pkgs/development/libraries/kirigami-addons/default.nix @@ -12,14 +12,14 @@ mkDerivation rec { pname = "kirigami-addons"; - version = "0.4"; + version = "0.6"; src = fetchFromGitLab { domain = "invent.kde.org"; owner = "libraries"; repo = pname; rev = "v${version}"; - sha256 = "sha256-3RPOab10kLcMVBngcRILDXbhOBI/BhjkMZqWVC0IPlM="; + sha256 = "sha256-RUu/0O/YRVRsRYeASfW8UQ/Ql2VbLOdVySVo9/hAmLw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libax25/default.nix b/pkgs/development/libraries/libax25/default.nix new file mode 100644 index 0000000000000..7388a728f5f03 --- /dev/null +++ b/pkgs/development/libraries/libax25/default.nix @@ -0,0 +1,31 @@ +{ lib +, stdenv +, fetchurl +, glibc +}: + +stdenv.mkDerivation rec { + pname = "libax25"; + version = "0.0.12-rc5"; + + buildInputs = [ glibc ] ++ lib.optional stdenv.hostPlatform.isStatic [ glibc.static ]; + + # Due to recent unsolvable administrative domain problems with linux-ax25.org, + # the new domain is linux-ax25.in-berlin.de + src = fetchurl { + url = "https://linux-ax25.in-berlin.de/pub/ax25-lib/libax25-${version}.tar.gz"; + hash = "sha256-vxV5GVDOHr38N/512ArZpnZ+a7FTbXBNpoSJkc9DI98="; + }; + + configureFlags = [ "--sysconfdir=/etc" ]; + + LDFLAGS = lib.optionals stdenv.hostPlatform.isStatic [ "-static-libgcc" "-static" ]; + + meta = with lib; { + description = "AX.25 library for hamradio applications"; + homepage = "https://linux-ax25.in-berlin.de/wiki/Main_Page"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ sarcasticadmin ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/libcouchbase/default.nix b/pkgs/development/libraries/libcouchbase/default.nix index a1d75d65aa63e..50fc23aa5f109 100644 --- a/pkgs/development/libraries/libcouchbase/default.nix +++ b/pkgs/development/libraries/libcouchbase/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libcouchbase"; - version = "3.3.2"; + version = "3.3.3"; src = fetchFromGitHub { owner = "couchbase"; repo = "libcouchbase"; rev = version; - sha256 = "sha256-nGZHAp2ajGHNHjfKTAQrQSlBmyufzP9V8/vRO6S8Ui0="; + sha256 = "sha256-kg/dVarfmDibZXLGY4zXfReNQ1DC4T/3g54g8zxNmEs="; }; cmakeFlags = [ "-DLCB_NO_MOCK=ON" ]; diff --git a/pkgs/development/libraries/libdeltachat/default.nix b/pkgs/development/libraries/libdeltachat/default.nix index 23f2a1d0d723f..0f4bed9c39d97 100644 --- a/pkgs/development/libraries/libdeltachat/default.nix +++ b/pkgs/development/libraries/libdeltachat/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "libdeltachat"; - version = "1.102.0"; + version = "1.104.0"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = version; - hash = "sha256-xw/lUNs39nkBrydpcgUBL3j6XrZFafKslxx6zUiElWw="; + hash = "sha256-+FQ6XE+CtvSNSgpEr8h0mcr9DCC6TvGgLrYGdw0Ve2o="; }; patches = [ @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-CiqYKFABHcFSjYUH/qop1xWCoygQJajI7nhv04ElD10="; + hash = "sha256-c3tt+nYZksI/VhJk4bNHu9ZXeDTaA2aLAQo1BmuF+2g="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libdigidocpp/default.nix b/pkgs/development/libraries/libdigidocpp/default.nix index 7d34388aea392..21da1a917bf1a 100644 --- a/pkgs/development/libraries/libdigidocpp/default.nix +++ b/pkgs/development/libraries/libdigidocpp/default.nix @@ -2,12 +2,12 @@ , xercesc, xml-security-c, pkg-config, xsd, zlib, xalanc, xxd }: stdenv.mkDerivation rec { - version = "3.14.10"; + version = "3.14.11"; pname = "libdigidocpp"; src = fetchurl { url = "https://github.com/open-eid/libdigidocpp/releases/download/v${version}/libdigidocpp-${version}.tar.gz"; - hash = "sha256-n/+R4ho1Qcft3YSKE12oxZjbFHAsUDwoLFNuk5GXf5c="; + hash = "sha256-5QYKHwRB5nck5yqukX/UA+M3jFlBvkQ/ekB7JFIY5tI="; }; nativeBuildInputs = [ cmake pkg-config xxd ]; diff --git a/pkgs/development/libraries/libextractor/default.nix b/pkgs/development/libraries/libextractor/default.nix index 29762e231f2d7..3df4a8f91e3cb 100644 --- a/pkgs/development/libraries/libextractor/default.nix +++ b/pkgs/development/libraries/libextractor/default.nix @@ -1,7 +1,7 @@ { fetchurl, lib, stdenv, substituteAll , libtool, gettext, zlib, bzip2, flac, libvorbis , exiv2, libgsf, rpm, pkg-config -, gstreamerSupport ? true, gst_all_1 ? null +, gstreamerSupport ? true, gst_all_1 # ^ Needed e.g. for proper id3 and FLAC support. # Set to `false` to decrease package closure size by about 87 MB (53%). , gstPlugins ? (gst: [ gst.gst-plugins-base gst.gst-plugins-good ]) @@ -12,12 +12,9 @@ # wrapProgram $out/bin/extract --prefix GST_PLUGIN_SYSTEM_PATH_1_0 : "$GST_PLUGIN_SYSTEM_PATH_1_0" # ''; # See also <https://nixos.org/nixpkgs/manual/#sec-language-gnome>. -, gtkSupport ? true, glib ? null, gtk3 ? null -, videoSupport ? true, ffmpeg ? null, libmpeg2 ? null}: - -assert gstreamerSupport -> gst_all_1 != null && builtins.isList (gstPlugins gst_all_1); -assert gtkSupport -> glib != null && gtk3 != null; -assert videoSupport -> ffmpeg != null && libmpeg2 != null; +, gtkSupport ? true, glib, gtk3 +, videoSupport ? true, ffmpeg, libmpeg2 +}: stdenv.mkDerivation rec { pname = "libextractor"; diff --git a/pkgs/development/libraries/libqalculate/default.nix b/pkgs/development/libraries/libqalculate/default.nix index 9c5d295e6edbe..c097922be988a 100644 --- a/pkgs/development/libraries/libqalculate/default.nix +++ b/pkgs/development/libraries/libqalculate/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "libqalculate"; - version = "4.4.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "libqalculate"; rev = "v${version}"; - sha256 = "sha256-/TgsGlO8RJ3L+2425odye365QqBzCHrr1Z4zUj+Ld8I="; + sha256 = "sha256-EOr5FtQnF5N96s9Aeh5sMV3vwXQgpqFSvrYVGmNkWrs="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/libredwg/default.nix b/pkgs/development/libraries/libredwg/default.nix index a3b43e9377e1f..155af3f74f4f6 100644 --- a/pkgs/development/libraries/libredwg/default.nix +++ b/pkgs/development/libraries/libredwg/default.nix @@ -59,7 +59,6 @@ stdenv.mkDerivation rec { checkInputs = lib.optionals enablePython [ libxml2 libxml2.dev ]; meta = with lib; { - broken = stdenv.isDarwin && stdenv.isAarch64; description = "Free implementation of the DWG file format"; homepage = "https://savannah.gnu.org/projects/libredwg/"; maintainers = with maintainers; [ tweber ]; diff --git a/pkgs/development/libraries/libshumate/default.nix b/pkgs/development/libraries/libshumate/default.nix index 2d7e6c5fb7a2e..4164ef4a46f8f 100644 --- a/pkgs/development/libraries/libshumate/default.nix +++ b/pkgs/development/libraries/libshumate/default.nix @@ -61,7 +61,10 @@ stdenv.mkDerivation rec { checkPhase = '' runHook preCheck - HOME=$TMPDIR xvfb-run meson test --print-errorlogs + env \ + HOME="$TMPDIR" \ + GTK_A11Y=none \ + xvfb-run meson test --print-errorlogs runHook postCheck ''; diff --git a/pkgs/development/libraries/libva/utils.nix b/pkgs/development/libraries/libva/utils.nix index ce060c66a35b6..85a2b1835244f 100644 --- a/pkgs/development/libraries/libva/utils.nix +++ b/pkgs/development/libraries/libva/utils.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "libva-utils"; - version = "2.15.0"; + version = "2.16.0"; src = fetchFromGitHub { owner = "intel"; repo = "libva-utils"; rev = version; - sha256 = "sha256-oElqJqOa/Q+2NE6gZS2tJnFJfalP6HsuUduk8cbuy84="; + sha256 = "sha256-6gjOheppHGTHUoT+pVJ6Tfgj9qDB+/MjaI3Win4ULRM="; }; nativeBuildInputs = [ meson ninja pkg-config ]; diff --git a/pkgs/development/libraries/libvncserver/default.nix b/pkgs/development/libraries/libvncserver/default.nix index c111a81b0ccb5..7f3f945d6fde1 100644 --- a/pkgs/development/libraries/libvncserver/default.nix +++ b/pkgs/development/libraries/libvncserver/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { pname = "libvncserver"; - version = "0.9.13"; + version = "0.9.14"; outputs = [ "out" "dev" ]; @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { owner = "LibVNC"; repo = "libvncserver"; rev = "LibVNCServer-${version}"; - sha256 = "sha256-gQT/M2u4nWQ0MfO2gWAqY0ZJc7V9eGczGzcsxKmG4H8="; + sha256 = "sha256-kqVZeCTp+Z6BtB6nzkwmtkJ4wtmjlSQBg05lD02cVvQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libxklavier/default.nix b/pkgs/development/libraries/libxklavier/default.nix index cdce45e11fe41..3fa295279f0cd 100644 --- a/pkgs/development/libraries/libxklavier/default.nix +++ b/pkgs/development/libraries/libxklavier/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchgit, autoreconfHook, pkg-config, gtk-doc, xkeyboard_config, libxml2, xorg, docbook_xsl +{ lib, stdenv, fetchgit, fetchpatch, autoreconfHook, pkg-config, gtk-doc, xkeyboard_config, libxml2, xorg, docbook_xsl , glib, isocodes, gobject-introspection , withDoc ? (stdenv.buildPlatform == stdenv.hostPlatform) }: @@ -13,7 +13,14 @@ stdenv.mkDerivation rec { sha256 = "1w1x5mrgly2ldiw3q2r6y620zgd89gk7n90ja46775lhaswxzv7a"; }; - patches = [ ./honor-XKB_CONFIG_ROOT.patch ]; + patches = [ + ./honor-XKB_CONFIG_ROOT.patch + ] ++ lib.optionals stdenv.isDarwin [ + (fetchpatch { + url = "https://gitlab.freedesktop.org/archived-projects/libxklavier/-/commit/1387c21a788ec1ea203c8392ea1460fc29d83f70.patch"; + sha256 = "sha256-fyWu7sVfDv/ozjhLSLCVsv+iNFawWgJqHUsQHHSkQn4="; + }) + ]; outputs = [ "out" "dev" ] ++ lib.optionals withDoc [ "devdoc" ]; @@ -38,6 +45,6 @@ stdenv.mkDerivation rec { description = "Library providing high-level API for X Keyboard Extension known as XKB"; homepage = "http://freedesktop.org/wiki/Software/LibXklavier"; license = licenses.lgpl2Plus; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/lightning/default.nix b/pkgs/development/libraries/lightning/default.nix index 5f8c71fa6aa36..44b58a9d81c81 100644 --- a/pkgs/development/libraries/lightning/default.nix +++ b/pkgs/development/libraries/lightning/default.nix @@ -1,32 +1,34 @@ -{ lib, stdenv, fetchurl, libopcodes }: - -with lib; -stdenv.mkDerivation rec { +{ lib +, stdenv +, fetchurl +, libopcodes +}: +stdenv.mkDerivation (finalAttrs: { pname = "lightning"; - version = "2.1.3"; + version = "2.2.0"; src = fetchurl { - url = "mirror://gnu/lightning/${pname}-${version}.tar.gz"; - sha256 = "1jgxbq2cm51dzi3zhz38mmgwdcgs328mfl8iviw8dxn6dn36p1gd"; + url = "mirror://gnu/lightning/${finalAttrs.pname}-${finalAttrs.version}.tar.gz"; + hash = "sha256-TjmE/xzPC6MKmFIR1A/FwGsl8BTr3z2A0P49DIDdfA4="; }; checkInputs = [ libopcodes ]; doCheck = true; - meta = { + meta = with lib; { homepage = "https://www.gnu.org/software/lightning/"; description = "Run-time code generation library"; longDescription = '' - GNU lightning is a library that generates assembly language code - at run-time; it is very fast, making it ideal for Just-In-Time - compilers, and it abstracts over the target CPU, as it exposes - to the clients a standardized RISC instruction set inspired by - the MIPS and SPARC chips. + GNU lightning is a library that generates assembly language code at + run-time; it is very fast, making it ideal for Just-In-Time compilers, and + it abstracts over the target CPU, as it exposes to the clients a + standardized RISC instruction set inspired by the MIPS and SPARC chips. ''; - maintainers = [ maintainers.AndersonTorres ]; + maintainers = with maintainers; [ AndersonTorres ]; license = licenses.lgpl3Plus; - platforms = lib.platforms.all; + platforms = platforms.unix; + broken = stdenv.isDarwin; # failing tests }; -} +}) diff --git a/pkgs/development/libraries/matio/default.nix b/pkgs/development/libraries/matio/default.nix index c92c712e1500f..a1aee4dd8f514 100644 --- a/pkgs/development/libraries/matio/default.nix +++ b/pkgs/development/libraries/matio/default.nix @@ -1,10 +1,10 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { pname = "matio"; - version = "1.5.22"; + version = "1.5.23"; src = fetchurl { url = "mirror://sourceforge/matio/${pname}-${version}.tar.gz"; - sha256 = "sha256-gMPR4iLhFXaLV7feZAo30O58t6O9A52z6pQecfxSBMM="; + sha256 = "sha256-n5Hq5mHfRupTwxGhstz/cgUQlbAjxhLXy/wJQGyfTW4="; }; meta = with lib; { diff --git a/pkgs/development/libraries/maui-core/default.nix b/pkgs/development/libraries/maui-core/default.nix new file mode 100644 index 0000000000000..4b9491ed9c324 --- /dev/null +++ b/pkgs/development/libraries/maui-core/default.nix @@ -0,0 +1,44 @@ +{ lib +, pkgs +, mkDerivation +, libcanberra +, pulseaudio +, fetchFromGitHub +, cmake +, extra-cmake-modules +, kio +, kidletime +}: + +mkDerivation rec { + pname = "maui-core"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "Nitrux"; + repo = pname; + rev = "refs/tags/v${version}"; + sha256 = "sha256-58ja76N7LrJ0f/SsNMYr7Z9hdW60PwsNlTkHQ+NEdUM="; + }; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + kidletime + kio + libcanberra + pulseaudio + ]; + + meta = with lib; { + description = "Core libraries to manage the desktop to be shared between Maui Settings and Cask"; + homepage = "https://github.com/Nitrux/maui-core"; + # Missing license information https://github.com/Nitrux/maui-core/issues/1 + license = licenses.unfree; + maintainers = with maintainers; [ onny ]; + }; + +} diff --git a/pkgs/development/libraries/nghttp3/default.nix b/pkgs/development/libraries/nghttp3/default.nix index 3638422bb0cd5..f5c64a1d88ce9 100644 --- a/pkgs/development/libraries/nghttp3/default.nix +++ b/pkgs/development/libraries/nghttp3/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "nghttp3"; - version = "0.7.1"; + version = "0.8.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - sha256 = "sha256-LSHhvRTzqpGJcyK3KoZZjbZVggXpgDEEVpp8gMoaE7U="; + sha256 = "sha256-Zexcfkf8Br3wduUpM3tcS68fEVO6reNxYSB3X3qUWKg="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/ngtcp2/default.nix b/pkgs/development/libraries/ngtcp2/default.nix index 0611bccbf4022..9ecbbaa9130a4 100644 --- a/pkgs/development/libraries/ngtcp2/default.nix +++ b/pkgs/development/libraries/ngtcp2/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "ngtcp2"; - version = "0.11.0"; + version = "0.12.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - sha256 = "sha256-u6orYF/VzXpcUdCitPawoet3KAhXlTQ2giR5eTQkrLY="; + sha256 = "sha256-OnGzAUfIop/3/0qAAm5rgTlpCdZ/1fwWPJ/KLfGUy8U="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/oneDNN/default.nix b/pkgs/development/libraries/oneDNN/default.nix index f5e5a2e03d2cc..a5f15e38740a0 100644 --- a/pkgs/development/libraries/oneDNN/default.nix +++ b/pkgs/development/libraries/oneDNN/default.nix @@ -5,13 +5,13 @@ # https://github.com/oneapi-src/oneDNN#oneapi-deep-neural-network-library-onednn stdenv.mkDerivation rec { pname = "oneDNN"; - version = "2.7.1"; + version = "3.0"; src = fetchFromGitHub { owner = "oneapi-src"; repo = "oneDNN"; rev = "v${version}"; - sha256 = "sha256-HBCuSZkApd/6UkAxz/KDFb/gyX2SI1S2GwgXAXSTU/c="; + sha256 = "sha256-rhuu2C1etU3IHaLSvUiJKMwgnPpcm1g40xjwDprc2LU="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/paho-mqtt-c/default.nix b/pkgs/development/libraries/paho-mqtt-c/default.nix index 37a829088d819..836f9fe625dfb 100644 --- a/pkgs/development/libraries/paho-mqtt-c/default.nix +++ b/pkgs/development/libraries/paho-mqtt-c/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "paho.mqtt.c"; - version = "1.3.11"; + version = "1.3.12"; src = fetchFromGitHub { owner = "eclipse"; repo = "paho.mqtt.c"; rev = "v${version}"; - hash = "sha256-TGCWA9tOOx0rCb/XQWqLFbXb9gOyGS8u6o9fvSRS6xI="; + hash = "sha256-LxyMbMA6Antt8Uu4jCvmvYT9+Vm4ZUVz4XXFdd0O7Kk="; }; postPatch = '' diff --git a/pkgs/development/libraries/qt-5/modules/qtbase.nix b/pkgs/development/libraries/qt-5/modules/qtbase.nix index db1367f6fba56..0102c2fd1b6f7 100644 --- a/pkgs/development/libraries/qt-5/modules/qtbase.nix +++ b/pkgs/development/libraries/qt-5/modules/qtbase.nix @@ -14,7 +14,7 @@ # optional dependencies , cups ? null, libmysqlclient ? null, postgresql ? null -, withGtk3 ? false, dconf ? null, gtk3 ? null +, withGtk3 ? false, dconf, gtk3 # options , libGLSupported ? !stdenv.isDarwin @@ -26,9 +26,6 @@ , decryptSslTraffic ? false }: -assert withGtk3 -> dconf != null; -assert withGtk3 -> gtk3 != null; - let compareVersion = v: builtins.compareVersions version v; qmakeCacheName = if compareVersion "5.12.4" < 0 then ".qmake.cache" else ".qmake.stash"; diff --git a/pkgs/development/libraries/resolv_wrapper/default.nix b/pkgs/development/libraries/resolv_wrapper/default.nix index c6669edbc1641..58863d6e26425 100644 --- a/pkgs/development/libraries/resolv_wrapper/default.nix +++ b/pkgs/development/libraries/resolv_wrapper/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "resolv_wrapper"; - version = "1.1.7"; + version = "1.1.8"; src = fetchurl { url = "mirror://samba/cwrap/resolv_wrapper-${version}.tar.gz"; - sha256 = "sha256-Rgrn/V5TSFvn3ZmlXFki8csWNrnoghmB1JrRZQfIoHQ="; + sha256 = "sha256-+8MPd9o+EuzU72bM9at34LdEkwzNiQYkBAgvkoqOwuA="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/development/libraries/rocksdb/default.nix b/pkgs/development/libraries/rocksdb/default.nix index f1d1afe5f0690..233a69e57b4e4 100644 --- a/pkgs/development/libraries/rocksdb/default.nix +++ b/pkgs/development/libraries/rocksdb/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "rocksdb"; - version = "7.7.3"; + version = "7.8.3"; src = fetchFromGitHub { owner = "facebook"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Np3HPTZYzyoPOKL0xgsLzcvOkceFiEQd+1nyGbg4BHo="; + sha256 = "sha256-HVLxLltOZ0e9BCekynjdc+f/fTS9vz15GZVKB77uDXo="; }; nativeBuildInputs = [ cmake ninja ]; @@ -31,6 +31,11 @@ stdenv.mkDerivation rec { buildInputs = lib.optional enableJemalloc jemalloc; + outputs = [ + "out" + "tools" + ]; + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isGNU "-Wno-error=deprecated-copy -Wno-error=pessimizing-move" + lib.optionalString stdenv.cc.isClang "-Wno-error=unused-private-field -faligned-allocation"; @@ -41,6 +46,7 @@ stdenv.mkDerivation rec { "-DWITH_BENCHMARK_TOOLS=0" "-DWITH_TESTS=1" "-DWITH_TOOLS=0" + "-DWITH_CORE_TOOLS=1" "-DWITH_BZ2=1" "-DWITH_LZ4=1" "-DWITH_SNAPPY=1" @@ -57,6 +63,15 @@ stdenv.mkDerivation rec { # otherwise "cc1: error: -Wformat-security ignored without -Wformat [-Werror=format-security]" hardeningDisable = lib.optional stdenv.hostPlatform.isWindows "format"; + preInstall = '' + mkdir -p $tools/bin + cp tools/{ldb,sst_dump} $tools/bin/ + '' + lib.optionalString stdenv.isDarwin '' + ls -1 $tools/bin/* | xargs -I{} install_name_tool -change "@rpath/librocksdb.7.dylib" $out/lib/librocksdb.dylib {} + '' + lib.optionalString (stdenv.isLinux && enableShared) '' + ls -1 $tools/bin/* | xargs -I{} patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib {} + ''; + # Old version doesn't ship the .pc file, new version puts wrong paths in there. postFixup = '' if [ -f "$out"/lib/pkgconfig/rocksdb.pc ]; then diff --git a/pkgs/development/libraries/science/benchmark/papi/default.nix b/pkgs/development/libraries/science/benchmark/papi/default.nix index d4610d60415b7..06dc203aa2fb0 100644 --- a/pkgs/development/libraries/science/benchmark/papi/default.nix +++ b/pkgs/development/libraries/science/benchmark/papi/default.nix @@ -3,12 +3,12 @@ }: stdenv.mkDerivation rec { - version = "6.0.0.1"; + version = "7.0.0"; pname = "papi"; src = fetchurl { url = "https://bitbucket.org/icl/papi/get/papi-${lib.replaceStrings ["."] ["-"] version}-t.tar.gz"; - sha256 = "1jd67yadyffzxwsqlylsi0bx8ishb0cgj2ziz1wdslaz6ylvyf9j"; + sha256 = "sha256-MxiOzfBxLmzsUg4jo2VHThyGE0/WYD3ZEBrq3WRjXGU="; }; setSourceRoot = '' diff --git a/pkgs/development/libraries/sentry-native/default.nix b/pkgs/development/libraries/sentry-native/default.nix index a4b096cee39b6..a2be472cc3a5a 100644 --- a/pkgs/development/libraries/sentry-native/default.nix +++ b/pkgs/development/libraries/sentry-native/default.nix @@ -1,18 +1,33 @@ -{ lib, stdenv, fetchFromGitHub, cmake, curl, breakpad, pkg-config }: +{ lib +, stdenv +, fetchFromGitHub +, cmake +, curl +, breakpad +, pkg-config +}: stdenv.mkDerivation rec { pname = "sentry-native"; - version = "0.5.2"; + version = "0.5.3"; src = fetchFromGitHub { owner = "getsentry"; repo = "sentry-native"; rev = version; - sha256 = "sha256-zSu6jcls1PtoSZNp6VGnXrXS5ViiY6ZghPYWaVwPVtw="; + hash = "sha256-zeJGgtqEITK1fQtqFXwh+kpaS9Ky+RSY/uxZ2as8YyM="; }; - nativeBuildInputs = [ cmake pkg-config ]; - buildInputs = [ curl breakpad ]; + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + curl + breakpad + ]; + cmakeFlags = [ "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DSENTRY_BREAKPAD_SYSTEM=On" @@ -20,7 +35,8 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://github.com/getsentry/sentry-native"; - description = "Sentry SDK for C, C++ and native applications."; + description = "Sentry SDK for C, C++ and native applications"; + changelog = "https://github.com/getsentry/sentry-native/blob/${version}/CHANGELOG.md"; license = licenses.mit; platforms = platforms.linux; maintainers = with maintainers; [ wheelsandmetal ]; diff --git a/pkgs/development/libraries/spice-gtk/default.nix b/pkgs/development/libraries/spice-gtk/default.nix index 4ea33774cf2d7..2111b23a6f756 100644 --- a/pkgs/development/libraries/spice-gtk/default.nix +++ b/pkgs/development/libraries/spice-gtk/default.nix @@ -100,10 +100,11 @@ stdenv.mkDerivation rec { python3 python3.pkgs.pyparsing python3.pkgs.six - wayland-scanner vala ] ++ lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ mesonEmulatorHook + ] ++ lib.optionals stdenv.isLinux [ + wayland-scanner ]; propagatedBuildInputs = [ diff --git a/pkgs/development/libraries/sqlcipher/default.nix b/pkgs/development/libraries/sqlcipher/default.nix index 7a6b53cb9bf33..bd8bb5fb56dd8 100644 --- a/pkgs/development/libraries/sqlcipher/default.nix +++ b/pkgs/development/libraries/sqlcipher/default.nix @@ -1,19 +1,42 @@ -{ stdenv, lib, fetchFromGitHub, openssl, tcl, installShellFiles, buildPackages, readline, ncurses, zlib, sqlite }: +{ lib +, stdenv +, fetchFromGitHub +, openssl +, tcl +, installShellFiles +, buildPackages +, readline +, ncurses +, zlib +, sqlite +}: stdenv.mkDerivation rec { pname = "sqlcipher"; - version = "4.5.2"; + version = "4.5.3"; src = fetchFromGitHub { owner = "sqlcipher"; repo = "sqlcipher"; rev = "v${version}"; - sha256 = "sha256-EUm4akVWUiK8U6Je1uWMo8KLQLsk57kOFCCU5Uajjt8="; + hash = "sha256-yo7bB6xgF23Hdur25fprSFgbuxNclseUCdq3DFAfIK8="; }; - nativeBuildInputs = [ installShellFiles tcl ]; - buildInputs = [ readline ncurses openssl zlib ]; - depsBuildBuild = [ buildPackages.stdenv.cc ]; + nativeBuildInputs = [ + installShellFiles + tcl + ]; + + buildInputs = [ + readline + ncurses + openssl + zlib + ]; + + depsBuildBuild = [ + buildPackages.stdenv.cc + ]; configureFlags = [ "--enable-threadsafe" @@ -35,9 +58,11 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = "https://www.zetetic.net/sqlcipher/"; + changelog = "https://github.com/sqlcipher/sqlcipher/blob/v${version}/CHANGELOG.md"; description = "SQLite extension that provides 256 bit AES encryption of database files"; - platforms = platforms.unix; + homepage = "https://www.zetetic.net/sqlcipher/"; license = licenses.bsd3; + maintainers = with maintainers; [ ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/ta-lib/default.nix b/pkgs/development/libraries/ta-lib/default.nix new file mode 100644 index 0000000000000..57e3f34bc6461 --- /dev/null +++ b/pkgs/development/libraries/ta-lib/default.nix @@ -0,0 +1,25 @@ +{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config }: + +stdenv.mkDerivation rec { + name = "ta-lib"; + version = "0.4.0"; + src = fetchFromGitHub { + owner = "rafa-dot-el"; + repo = "talib"; + rev = "${version}"; + sha256 = "sha256-bIzN8f9ZiOLaVzGAXcZUHUh/v9z1U+zY+MnyjJr1lSw="; + }; + + nativeBuildInputs = [ pkg-config autoreconfHook ]; + hardeningDisable = [ "format" ]; + + meta = with lib; { + description = + "TA-Lib is a library that provides common functions for the technical analysis of financial market data."; + homepage = "https://ta-lib.org/"; + license = lib.licenses.bsd3; + + platforms = platforms.linux; + maintainers = with maintainers; [ rafael ]; + }; +} diff --git a/pkgs/development/libraries/vtk/generic.nix b/pkgs/development/libraries/vtk/generic.nix index 555e7d0a45de6..1994e4ace1146 100644 --- a/pkgs/development/libraries/vtk/generic.nix +++ b/pkgs/development/libraries/vtk/generic.nix @@ -30,8 +30,6 @@ in stdenv.mkDerivation rec { else [ (qtEnv "qvtk-qt-env" [ qtx11extras qttools qtdeclarative ]) ]) ++ optionals stdenv.isLinux [ libGLU - libGL - libX11 xorgproto libXt ] ++ optionals stdenv.isDarwin [ @@ -51,7 +49,9 @@ in stdenv.mkDerivation rec { ] ++ optionals enablePython [ pythonInterpreter ]; - propagatedBuildInputs = optionals stdenv.isDarwin [ libobjc ]; + propagatedBuildInputs = optionals stdenv.isDarwin [ libobjc ] + ++ optionals stdenv.isLinux [ libX11 libGL ]; + # see https://github.com/NixOS/nixpkgs/pull/178367#issuecomment-1238827254 patches = map fetchpatch patchesToFetch; diff --git a/pkgs/development/libraries/zchunk/default.nix b/pkgs/development/libraries/zchunk/default.nix index 815326e538383..c05ba6d0cff09 100644 --- a/pkgs/development/libraries/zchunk/default.nix +++ b/pkgs/development/libraries/zchunk/default.nix @@ -11,20 +11,15 @@ stdenv.mkDerivation rec { pname = "zchunk"; - version = "1.2.2"; + version = "1.2.3"; src = fetchFromGitHub { owner = "zchunk"; repo = pname; rev = version; - hash = "sha256-/gtkw020pybUDUeYydXgJ4PLvdOqZ0RbrLOfNMDaCmA="; + hash = "sha256-YzCEQuG38lVhCwZznhIyny6Yya8iNuhdqgYBz9OhGOc="; }; - # unbreak on darwin by finding argp-standalone, based on the patch from - # buildroot: - # https://github.com/buildroot/buildroot/raw/master/package/zchunk/0001-meson-fix-argp-standalone-wrap-and-find_library.patch - patches = lib.optional stdenv.isDarwin ./0001-meson-fix-argp-standalone.patch; - nativeBuildInputs = [ meson ninja diff --git a/pkgs/development/lua-modules/generated-packages.nix b/pkgs/development/lua-modules/generated-packages.nix index 57f616e088dd0..487f854b2ce49 100644 --- a/pkgs/development/lua-modules/generated-packages.nix +++ b/pkgs/development/lua-modules/generated-packages.nix @@ -224,17 +224,17 @@ cldr = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "cldr"; - version = "0.2.0-0"; + version = "0.3.0-0"; knownRockspec = (fetchurl { - url = "mirror://luarocks/cldr-0.2.0-0.rockspec"; - sha256 = "1vjwrlrdy10bacn0324fvs4sx85xryyg7npw2mp1k9kmasfr8r1s"; + url = "mirror://luarocks/cldr-0.3.0-0.rockspec"; + sha256 = "1fnr8k713w21v7hc64s4w5lgcgnbphq3gm69pisc2s4wq2fkija1"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/alerque/cldr-lua.git", - "rev": "51e4760838c0a83ef1a76d0a0fb2e9f964069a50", - "date": "2022-04-16T14:46:14+03:00", - "path": "/nix/store/7jziz15bjm27zw9i3arrxprglakz8n4d-cldr-lua", - "sha256": "1i22mcs50z99850j47gkgwyf0ahl4yh1732b4x3davjwy2fwak1x", + "rev": "4602a7859535ca198ddfaba73a02f9bce3e81025", + "date": "2022-12-06T12:36:06+03:00", + "path": "/nix/store/3xgwqd2pica8301sbfrw4bmv0xm2wzx5-cldr-lua", + "sha256": "0hlfb115qhamczzskvckxczf9dpp8cv8h6vz7zgdl2n025ik9dp4", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -368,6 +368,38 @@ buildLuarocksPackage { }; }) {}; +cyan = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast +, fetchgit, argparse, luafilesystem, tl +}: +buildLuarocksPackage { + pname = "cyan"; + version = "0.2.0-1"; + knownRockspec = (fetchurl { + url = "mirror://luarocks/cyan-0.2.0-1.rockspec"; + sha256 = "06v9arib8slcllqxxx0a1z7wqmb184v7klrisvkdqqhpbrry7ys5"; + }).outPath; + src = fetchgit ( removeAttrs (builtins.fromJSON ''{ + "url": "https://github.com/teal-language/cyan", + "rev": "d2048e73fec6c693a90b189c63db47006cbae699", + "date": "2022-08-21T17:11:18-05:00", + "path": "/nix/store/gz58lng3g8hflqgl6xsnmzkjika0ncvx-cyan", + "sha256": "119slbsvl39r2c51gvv9yvnsda0x9yvbrxnm2nzz2pnwh3ry50qc", + "fetchLFS": false, + "fetchSubmodules": true, + "deepClone": false, + "leaveDotGit": false +} + '') ["date" "path"]) ; + + propagatedBuildInputs = [ argparse luafilesystem tl ]; + + meta = { + homepage = "https://github.com/teal-language/cyan"; + description = "A build system for the Teal language"; + license.fullName = "MIT"; + }; +}) {}; + cyrussasl = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast , fetchgit, lua }: @@ -407,10 +439,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/astoff/digestif", - "rev": "95b13ba7ed33605406353b200920ece08868d5a8", - "date": "2022-07-03T13:41:35+02:00", - "path": "/nix/store/k8y6gk4pqri76657c2sy4j4bkyh30jz5-digestif", - "sha256": "12pksz1l84iml7ng6yhywf0fyy8lclmcn2jjkdrh994lb7q9ya99", + "rev": "f1b4202928a49e8c20f84ed14deafd0f6b798e2f", + "date": "2022-12-07T18:12:23+01:00", + "path": "/nix/store/ss4kfahp9gnz2y826fr5w6dqxyxs25sn-digestif", + "sha256": "1jb8h7yks8bp74jpq85sz69d2k69vhp6gliajz8ximl3hbhdq17i", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -424,7 +456,7 @@ buildLuarocksPackage { meta = { homepage = "https://github.com/astoff/digestif/"; description = "A code analyzer for TeX"; - license.fullName = "MIT"; + license.fullName = "GPLv3+ and other free licenses"; }; }) {}; @@ -546,10 +578,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lewis6991/gitsigns.nvim", - "rev": "56e01cb0ea52635854e97bd2dd2587c8ebfab978", - "date": "2022-10-16T16:50:37+01:00", - "path": "/nix/store/yrm4xpi43x2sijw8gamvlfgqnyd7j19l-gitsigns.nvim", - "sha256": "0rdfnw2pr0hjxlw7bfjfvbh7lll4ba8ymp5nxq58d0jq01lzsxkr", + "rev": "2ab3bdf0a40bab53033048c6be75bda86316b55d", + "date": "2022-12-19T14:51:38+00:00", + "path": "/nix/store/hdjmih6vd3707wdfvycnvq1ig2q349xx-gitsigns.nvim", + "sha256": "13j5cmrd54cx9d8rirmys01xgmf90ylc3wb5dzmsdjc7hy0viha2", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -693,10 +725,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/stevedonovan/LDoc.git", - "rev": "71dd5edbda829cd87b312956f4eae1ff8133fb14", - "date": "2022-06-17T13:41:29+03:00", - "path": "/nix/store/ywgvf4a5bdh7b7jzx8xgibch0a9kr9d2-LDoc", - "sha256": "0wwr28fl46y84p78bxaw9wsb7b4x7hmjywfdx5d70axh0amnlyrv", + "rev": "01d648f4ad50c3d14f2acadee6acb26beda56990", + "date": "2022-11-18T00:01:45+01:00", + "path": "/nix/store/m7vvl2b5k69jrb88d0y60f2y4ryazkp9-LDoc", + "sha256": "1kl0ba9mnd7nksakzb3vwr0hkkkgyk92v93r2w9xnrq879dhy5mm", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1084,17 +1116,17 @@ lua-cjson = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lua-cjson"; - version = "2.1.0.6-1"; + version = "2.1.0.10-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lua-cjson-2.1.0.6-1.rockspec"; - sha256 = "1x6dk17lwmgkafpki99yl1hlypchbrxr9sxqafrmx7wwvzbz6q11"; + url = "mirror://luarocks/lua-cjson-2.1.0.10-1.rockspec"; + sha256 = "05sp7rq72x4kdkyid1ch0yyscwsi5wk85d2hj6xwssz3h8n8drdg"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/openresty/lua-cjson", - "rev": "a03094c5473d9a9764bb486fbe5e99a62d166dae", - "date": "2018-04-19T12:03:43-07:00", - "path": "/nix/store/qdpqx2g0xi1c9fknzxx280mcdq6fi8rw-lua-cjson", - "sha256": "0i2sjsi6flax1k0bm647yijgmc02jznq9bn88mj71pgii79pfjhw", + "rev": "96e6e0ce67ed070a52223c1e9518c9018b1ce376", + "date": "2021-12-10T20:19:58+08:00", + "path": "/nix/store/1ac8lz6smfa8zqfipqfsg749l9rw4ly9-lua-cjson", + "sha256": "03hdsv7d77mggis58k8fmlpbh1d544m0lfqyl9rpjcqkiqs1qvza", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1233,17 +1265,17 @@ lua-protobuf = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lua-protobuf"; - version = "0.4.0-1"; + version = "0.4.1-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lua-protobuf-0.4.0-1.rockspec"; - sha256 = "053r6z37847wm1xaxv5rwplmdqkp507qawgd382z0l7m05f06ls9"; + url = "mirror://luarocks/lua-protobuf-0.4.1-1.rockspec"; + sha256 = "0b395lhby26drb8dzf2gn2avlwvxmnaqmqx5m4g3ik7dmmn7p09i"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/starwing/lua-protobuf.git", - "rev": "832facd266366cd86ee9bf41d35327255d0033f2", - "date": "2022-07-27T14:34:12+08:00", - "path": "/nix/store/g68x4cbi6ssd5zak14r5cbi7k88d3ml9-lua-protobuf", - "sha256": "0ynfq0va4w8zlr67ld6v9nmi5mnvchfygd8h5jbwk2vzlj9hg2yw", + "rev": "2a2b0b95117642ad9470bfe0add7dd6ce82f3869", + "date": "2022-11-29T21:34:24+08:00", + "path": "/nix/store/8yjzfj6gy8nkz1dxf0bmy8afwiv8gsjr-lua-protobuf", + "sha256": "0c1vjji0nj9lznsxw5gbnhab0ibs69298yrsn5yky0hhz8mmx5nr", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1365,17 +1397,17 @@ lua-resty-openssl = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast , fetchgit}: buildLuarocksPackage { pname = "lua-resty-openssl"; - version = "0.8.13-1"; + version = "0.8.15-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lua-resty-openssl-0.8.13-1.rockspec"; - sha256 = "12wd4v2pc3ppnr64109nx4sh33clwllfbp11mmg1c1n2w13fz578"; + url = "mirror://luarocks/lua-resty-openssl-0.8.15-1.rockspec"; + sha256 = "1i5nvii1wjgs28lcg8gk1axh394fz773br23jppa7rcan7lvrs4j"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/fffonion/lua-resty-openssl.git", - "rev": "3293e301f6c3818b780f1a818eacc9b78960b274", - "date": "2022-10-14T16:38:23+08:00", - "path": "/nix/store/ykj5yj8sj9rc5122gg7dcnq723fsxjq5-lua-resty-openssl", - "sha256": "0hkhy8x34z9m7wsqxrrc4vfqw0dbjhq36pjkqcq391vlsvzxhx5h", + "rev": "fadbea797bed4227269128a14fdabd4dee7cc486", + "date": "2022-10-28T12:17:38+08:00", + "path": "/nix/store/a6qqhb2p408mldvm1rqya09rjn04bbkj-lua-resty-openssl", + "sha256": "0w03fggfnqch6q90lwsig803i3rv74vsdxlfdbfb4si2yssjyxsz", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1635,17 +1667,17 @@ luacheck = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "luacheck"; - version = "1.0.0-1"; + version = "1.1.0-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/luacheck-1.0.0-1.rockspec"; - sha256 = "0q5kqix5n016piqhasp4h22srz1lzp96cjls4fgsbirjn87gsnxv"; + url = "mirror://luarocks/luacheck-1.1.0-1.rockspec"; + sha256 = "1r8d02x0hw28rd5p2gr7sf503lczjxv6qk1q66b375ibx6smpyza"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lunarmodules/luacheck.git", - "rev": "4d2979930245415e556a7c9f47b63ea038afcfee", - "date": "2022-08-24T12:50:43+03:00", - "path": "/nix/store/kfqdn4v9nzqqdw02fri10ic7v61r99n7-luacheck", - "sha256": "1dkqcaf0yrbcwbjiqbpdksj39sj8rbkd8432q568dgq2z5y9khcf", + "rev": "fcbdeacad00e643e0d78c56b9ba6d8b3c7fa584f", + "date": "2022-12-19T20:51:56+03:00", + "path": "/nix/store/srzi8dfrbb9gby9lc7r4sndzzrpzd7nm-luacheck", + "sha256": "0bkbcxadlf0j59lyvadp7hs7l107blkci15i0hrbi72bx18hj99h", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1992,17 +2024,17 @@ lualogging = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lualogging"; - version = "1.7.0-1"; + version = "1.8.0-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lualogging-1.7.0-1.rockspec"; - sha256 = "1h6zrhp3jvx4257gkskg8b6kd7pm6pd9wzhqb20vllyhj5vfb53h"; + url = "mirror://luarocks/lualogging-1.8.0-1.rockspec"; + sha256 = "0q1719r8lg8rnql809ylm6dbnja85f6nwyqir6f9giq3kcbvnsaq"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lunarmodules/lualogging.git", - "rev": "540df4424165b622d7c408b1f9d2d3420a5206e8", - "date": "2022-09-21T22:50:18+02:00", - "path": "/nix/store/69jb23b1gv0pcb20jwan342zzp0zjw1f-lualogging", - "sha256": "1rwbf593qx67cbk45vm155d7ws1y0xgxmwca508l8clq7d6rv3x0", + "rev": "1c6fcf5f68e4d0324c5977f1a27083c06f4d1b8f", + "date": "2022-10-22T09:15:52+02:00", + "path": "/nix/store/yi5v7b8jyplgylsjamjg9c0iswjpzrfj-lualogging", + "sha256": "17y84wrbijfm1z91p8i41ijq9py69qn0k6c5in9yl2mha7s1vndh", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2309,10 +2341,10 @@ luautf8 = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "luautf8"; - version = "0.1.4-1"; + version = "0.1.5-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/luautf8-0.1.4-1.rockspec"; - sha256 = "1pa91djyymhzfqnlc559v9wgk5l0m40wq0hnlnf841w6h5aj4fra"; + url = "mirror://luarocks/luautf8-0.1.5-1.rockspec"; + sha256 = "0b2fzb3ignpb028j35np3mkkydg73dpm0lqr4z89gzy2gfjm0iy7"; }).outPath; src = fetchurl { url = "https://github.com/starwing/luautf8/archive/refs/tags/0.1.4.tar.gz"; @@ -2372,10 +2404,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/rktjmp/lush.nvim", - "rev": "fca6940b754812746c9758cc512cc97dcdb47de0", - "date": "2022-10-17T06:32:03+11:00", - "path": "/nix/store/aybmp713rb8qa0crm94hgzjcqdvjjv8f-lush.nvim", - "sha256": "1q8jzyxdxlif7sjxjqs8x696q1734saca5g05gqhvv5d23287hrn", + "rev": "4cc81a12731fbefce1582a940b755691eb3eb6d1", + "date": "2022-12-16T22:20:07+11:00", + "path": "/nix/store/2h8v2ff1bha580jzyrhhwa9lnj98f327-lush.nvim", + "sha256": "0zwb9d8makr9k20cdf7fajhk3frbh4n4p1zajxig0f3ws867zjqx", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2451,14 +2483,14 @@ lyaml = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lyaml"; - version = "6.2.7-1"; + version = "6.2.8-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lyaml-6.2.7-1.rockspec"; - sha256 = "0m5bnzg24nyk35gcn4rydgzk0ysk1f6rslxwxd0w3drl1bg64zja"; + url = "mirror://luarocks/lyaml-6.2.8-1.rockspec"; + sha256 = "0d0h70kjl5fkq589y1sx8qy8as002dhcf88pf60pghvch002ryi1"; }).outPath; src = fetchzip { - url = "http://github.com/gvvaughan/lyaml/archive/v6.2.7.zip"; - sha256 = "1qfvk610xgglyv9n2dp0cnh21f20q2zkl941qsv9qcbnm2f03vna"; + url = "http://github.com/gvvaughan/lyaml/archive/v6.2.8.zip"; + sha256 = "0r3jjsd8x2fs1aanki0s1mvpznl16f32c1qfgmicy0icgy5xfch0"; }; disabled = with lua; (luaOlder "5.1") || (luaAtLeast "5.5"); @@ -2539,10 +2571,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/leafo/moonscript.git", - "rev": "b7efcd131046ed921ae1075d7c0f6a3b64a570f7", - "date": "2021-03-18T11:51:52-07:00", - "path": "/nix/store/xijbk0bgjpxjgmvscbqnghj4r3zdzgxl-moonscript", - "sha256": "14xx6pij0djblfv3g2hi0xlljh7h0yrbb03f4x90q5j66v693gx7", + "rev": "a0108328373d5f3f1aefb98341aa895dd75a1b2a", + "date": "2022-11-04T13:38:05-07:00", + "path": "/nix/store/js597jw44cdfq154a7bpqba99ninzsqh-moonscript", + "sha256": "02ig93c1dzrbs64mz40bkzz3p93fdxm6m0i7gfqwiickybr9wd97", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2614,10 +2646,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/hrsh7th/nvim-cmp", - "rev": "e94d3489311f941788756953df23ca84f83eec95", - "date": "2022-10-16T18:29:26+09:00", - "path": "/nix/store/jplbdkkgdbwxm930wyvxs6ghbljvh47g-nvim-cmp", - "sha256": "1v6iw2bqaqxzspl239jw3aqj64mc9sq2xxibvll7rmxxgv2mgyb5", + "rev": "8bbaeda725d5db6e4e1be2867a64b43bf547cf06", + "date": "2022-12-15T20:27:02+09:00", + "path": "/nix/store/bd3da1ahlp53p3b12780h2x29amr8a3h-nvim-cmp", + "sha256": "1ldbvspz6aam78d47ldpa7bv4z419bzsk5nhli75mz0vzidfvrw5", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2644,10 +2676,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lunarmodules/penlight.git", - "rev": "d5958e242b95984a278c39c63fadc5ef1258978b", - "date": "2022-08-14T10:06:20+02:00", - "path": "/nix/store/91nha43c2gdjyn8146fn9zfghlgvvdzz-penlight", - "sha256": "0bvc1a3g41mx8wlaq4ig3cl568rsysyggsr00hf7bi0ygf529sny", + "rev": "b101290c532c2901764de57367d3f2b84127286d", + "date": "2022-10-23T07:52:51+03:00", + "path": "/nix/store/k2jh5076dwb8dp6h05vbdj9jpa87gl1f-penlight", + "sha256": "10pb55cfqrpc9a112pvldkanh63s8dww452gl2rkjnrsh9b9gw4b", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2963,6 +2995,38 @@ buildLuarocksPackage { }; }) {}; +teal-language-server = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast +, fetchgit, cyan, dkjson, luafilesystem +}: +buildLuarocksPackage { + pname = "teal-language-server"; + version = "dev-1"; + knownRockspec = (fetchurl { + url = "mirror://luarocks/teal-language-server-dev-1.rockspec"; + sha256 = "01l44c6bknz7ff9xqgich31hlb0yk4ms5k1hs4rhm3cs95s5vlzc"; + }).outPath; + src = fetchgit ( removeAttrs (builtins.fromJSON ''{ + "url": "https://git@github.com/teal-language/teal-language-server.git", + "rev": "38266ed482ef4b7e51d9cf149f4c75103fd0cefc", + "date": "2022-11-22T12:51:28-06:00", + "path": "/nix/store/3wzza2p2c9ylcj8ihv4xmkgljkwgs0z6-teal-language-server", + "sha256": "0q50a9f4gskx80mifpg9lf5haxsiw53b9lik398ijbkym4mfg2sz", + "fetchLFS": false, + "fetchSubmodules": true, + "deepClone": false, + "leaveDotGit": false +} + '') ["date" "path"]) ; + + propagatedBuildInputs = [ cyan dkjson luafilesystem ]; + + meta = { + homepage = "https://github.com/teal-language/teal-language-server"; + description = "A language server for the Teal language"; + license.fullName = "MIT"; + }; +}) {}; + tl = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast , fetchgit, argparse, compat53, luafilesystem , dkjson}: diff --git a/pkgs/development/lua-modules/overrides.nix b/pkgs/development/lua-modules/overrides.nix index fe6e304d9f318..fbab2d259ac1c 100644 --- a/pkgs/development/lua-modules/overrides.nix +++ b/pkgs/development/lua-modules/overrides.nix @@ -376,7 +376,7 @@ with prev; ]; }); - lush-nvim = prev.luaLib.overrideLuarocks prev.lush-nvim (drv: rec { + lush-nvim = prev.luaLib.overrideLuarocks prev.lush-nvim (drv: { doCheck = false; }); @@ -398,10 +398,9 @@ with prev; patches = [ ./luuid.patch ]; - postConfigure = let inherit (prev.luuid) version pname; in - '' - sed -Ei ''${rockspecFilename} -e 's|lua >= 5.2|lua >= 5.1,|' - ''; + postConfigure = '' + sed -Ei ''${rockspecFilename} -e 's|lua >= 5.2|lua >= 5.1,|' + ''; }); diff --git a/pkgs/development/misc/brev-cli/default.nix b/pkgs/development/misc/brev-cli/default.nix index dabe3f748a924..d25bb93d49f4c 100644 --- a/pkgs/development/misc/brev-cli/default.nix +++ b/pkgs/development/misc/brev-cli/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "brev-cli"; - version = "0.6.186"; + version = "0.6.197"; src = fetchFromGitHub { owner = "brevdev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-h8PUxSjC21BsjqFgOOvDPClFLwOTFTTEB57zxUtbuTw="; + sha256 = "sha256-+elot37F8VW7BP18zB8wHbxTHLgnTlXLUJlr82/Y05w="; }; vendorSha256 = "sha256-uaLoh1VhJAT5liGqL77DLhAWviy5Ci8B16LuzCWuek8="; diff --git a/pkgs/development/misc/haskell/hasura/kriti-lang.nix b/pkgs/development/misc/haskell/hasura/kriti-lang.nix index 7e22aff40d7b4..17362f05dd0d7 100644 --- a/pkgs/development/misc/haskell/hasura/kriti-lang.nix +++ b/pkgs/development/misc/haskell/hasura/kriti-lang.nix @@ -38,4 +38,8 @@ mkDerivation { ]; license = lib.licenses.asl20; maintainers = with lib.maintainers; [ lassulus ]; + + # Does not compile with ghc-9.2 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix b/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix index 5c0b6b0eecb3b..28f2c7e812b04 100644 --- a/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix +++ b/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix @@ -7,8 +7,8 @@ mkDerivation { src = fetchFromGitHub { owner = "hercules-ci"; repo = "optparse-applicative"; - rev = "9e2968c09a7c5b29d04578dc68d81ce5aec0591e"; - sha256 = "sha256-11MnpQjmR89gW5WY5BwsPhpk/LwSIxEEhIa4LLiCbBc="; + rev = "3d20deefbef2e66d3c075facc5d01c1aede34f3c"; + sha256 = "sha256-FnFbPvy5iITT7rAjZBBUNQdo3UDP2z8iLg0MiIdXMdo="; }; libraryHaskellDepends = [ ansi-wl-pprint base process transformers transformers-compat diff --git a/pkgs/development/misc/resholve/source.nix b/pkgs/development/misc/resholve/source.nix index fc23352d5d674..c09d19aa0dae2 100644 --- a/pkgs/development/misc/resholve/source.nix +++ b/pkgs/development/misc/resholve/source.nix @@ -3,7 +3,7 @@ }: rec { - version = "0.8.3"; + version = "0.8.4"; rSrc = # local build -> `make ci`; `make clean` to restore # return to remote source @@ -14,6 +14,6 @@ rec { owner = "abathur"; repo = "resholve"; rev = "v${version}"; - hash = "sha256-HilYaHSMASYXNGoX9/QSP9mpspszksdUrxlkUB1yGHQ="; + hash = "sha256-K63d4Hs+q3N7A7TBQGgBYCNvZTMKTh89Q7PeFJMsU8o="; }; } diff --git a/pkgs/development/mobile/androidenv/compose-android-packages.nix b/pkgs/development/mobile/androidenv/compose-android-packages.nix index e6e29aa984794..fb59b1ec88d8c 100644 --- a/pkgs/development/mobile/androidenv/compose-android-packages.nix +++ b/pkgs/development/mobile/androidenv/compose-android-packages.nix @@ -6,7 +6,7 @@ , platformToolsVersion ? "33.0.2" , buildToolsVersions ? [ "32.0.0" ] , includeEmulator ? false -, emulatorVersion ? "31.3.7" +, emulatorVersion ? "31.3.9" , platformVersions ? [] , includeSources ? false , includeSystemImages ? false @@ -250,7 +250,7 @@ rec { by setting nixpkgs config option 'android_sdk.accept_license = true;'. '' else callPackage ./tools.nix { - inherit deployAndroidPackage packages toolsVersion; + inherit deployAndroidPackage packages toolsVersion os; postInstall = '' # Symlink all requested plugins diff --git a/pkgs/development/nim-packages/getdns/default.nix b/pkgs/development/nim-packages/getdns/default.nix new file mode 100644 index 0000000000000..035770da98be0 --- /dev/null +++ b/pkgs/development/nim-packages/getdns/default.nix @@ -0,0 +1,25 @@ +{ lib, buildNimPackage, fetchFromSourcehut, pkg-config, getdns }: + +buildNimPackage rec { + pname = "getdns"; + version = "20221222"; + src = fetchFromSourcehut { + owner = "~ehmry"; + repo = pname + "-nim"; + rev = version; + hash = "sha256-y7yzY1PcodIK2kC9409FuTpLn0TsWHGiEPnrULrob+k="; + }; + + propagatedNativeBuildInputs = [ pkg-config ]; + propagatedBuildInputs = [ getdns ]; + + doCheck = true; + checkPhase = "nim c tests/test_example_synchronous"; + # The test requires network but check if it builds. + + meta = { + inherit (getdns.meta) homepage license platforms; + description = "Nim wrapper over the getdns library"; + maintainers = with lib.maintainers; [ ehmry ]; + }; +} diff --git a/pkgs/development/node-packages/overrides.nix b/pkgs/development/node-packages/overrides.nix index 4e5b04e62404c..1356c39f0f823 100644 --- a/pkgs/development/node-packages/overrides.nix +++ b/pkgs/development/node-packages/overrides.nix @@ -410,7 +410,7 @@ final: prev: { src = fetchurl { url = "https://registry.npmjs.org/prisma/-/prisma-${version}.tgz"; - sha512 = "sha512-VsecNo0Ca3+bDTzSpJqIpdupKVhhQ8aOYeWc09JlUM89knqvhSrlMrg0U8BiOD4tFrY1OPaCcraK8leDBxKMBg=="; + sha512 = "sha512-DWIhxvxt8f4h6MDd35mz7BJff+fu7HItW3WPDIEpCR3RzcOWyiHBbLQW5/DOgmf+pRLTjwXQob7kuTZVYUAw5w=="; }; postInstall = with pkgs; '' wrapProgram "$out/bin/prisma" \ diff --git a/pkgs/development/ocaml-modules/dap/default.nix b/pkgs/development/ocaml-modules/dap/default.nix index 6d14945ee15e0..054020ba64e08 100644 --- a/pkgs/development/ocaml-modules/dap/default.nix +++ b/pkgs/development/ocaml-modules/dap/default.nix @@ -5,13 +5,13 @@ buildDunePackage rec { pname = "dap"; version = "1.0.6"; - useDune2 = true; + duneVersion = "3"; src = fetchurl { url = "https://github.com/hackwaly/ocaml-dap/releases/download/${version}/dap-${version}.tbz"; sha256 = "1zq0f8429m38a4x3h9n3rv7n1vsfjbs72pfi5902a89qwyilkcp0"; }; - minimumOCamlVersion = "4.08"; + minimalOCamlVersion = "4.08"; buildInputs = [ lwt_ppx diff --git a/pkgs/development/ocaml-modules/earlybird/default.nix b/pkgs/development/ocaml-modules/earlybird/default.nix index 2ef4946306c9d..08c0a284fad2c 100644 --- a/pkgs/development/ocaml-modules/earlybird/default.nix +++ b/pkgs/development/ocaml-modules/earlybird/default.nix @@ -11,9 +11,9 @@ buildDunePackage rec { pname = "earlybird"; version = "1.1.0"; - useDune2 = true; + duneVersion = "3"; - minimumOCamlVersion = "4.11"; + minimalOCamlVersion = "4.11"; src = fetchFromGitHub { owner = "hackwaly"; diff --git a/pkgs/development/ocaml-modules/janestreet/0.15.nix b/pkgs/development/ocaml-modules/janestreet/0.15.nix index 676bea0e47fe1..83a52c9b23bb2 100644 --- a/pkgs/development/ocaml-modules/janestreet/0.15.nix +++ b/pkgs/development/ocaml-modules/janestreet/0.15.nix @@ -1,4 +1,5 @@ { self +, bash , fetchpatch , lib , openssl @@ -487,6 +488,10 @@ with self; patdiff = janePackage { pname = "patdiff"; hash = "0623a7n5r659rkxbp96g361mvxkcgc6x9lcbkm3glnppplk5kxr9"; + + # Used by patdiff-git-wrapper. Providing it here also causes the shebang + # line to be automatically patched. + buildInputs = [ bash ]; propagatedBuildInputs = [ core_unix patience_diff ocaml_pcre ]; meta = { description = "File Diff using the Patience Diff algorithm"; @@ -826,11 +831,11 @@ with self; pythonlib = janePackage { pname = "pythonlib"; - hash = "0p88vmp19zmr0r58dz6sawsmbn4yi2vyymad2c82kp93kg66nm1v"; + version = "0.15.1"; + hash = "sha256-j8WXVTEiBmHtoTjkbnIh31vC4IghfAMaEL19nDLx3mc="; meta.description = "A library to help writing wrappers around ocaml code for python"; - patches = lib.optional (lib.versionAtLeast ocaml.version "4.13") ./pythonlib.patch; + buildInputs = [ ppx_optcomp ]; propagatedBuildInputs = [ ppx_expect ppx_let ppx_python stdio typerep ]; - meta.broken = lib.versionAtLeast ocaml.version "4.14"; }; re2 = janePackage { diff --git a/pkgs/development/ocaml-modules/janestreet/pythonlib.patch b/pkgs/development/ocaml-modules/janestreet/pythonlib.patch deleted file mode 100644 index 71a32fd0236c3..0000000000000 --- a/pkgs/development/ocaml-modules/janestreet/pythonlib.patch +++ /dev/null @@ -1,22 +0,0 @@ -diff --git a/src/type.ml b/src/type.ml -index 8a9e648..3f3b0e9 100644 ---- a/src/type.ml -+++ b/src/type.ml -@@ -31,12 +31,12 @@ let of_type_desc type_desc ~env = - | Tunivar _ -> Or_error.error_string "not handled: Tunivar" - | Tvariant _ -> Or_error.error_string "not handled: Tvariant" - | Tnil -> Or_error.error_string "not handled: Tnil" -- | Tobject (_, _) -> Or_error.error_string "not handled: Tobject" -- | Tfield (_, _, _, _) -> Or_error.error_string "not handled: Tfield" -- | Tpackage (_, _, _) -> Or_error.error_string "not handled: Tpackage" -- | Tpoly (_, _) -> Or_error.error_string "not handled: Tpoly" -+ | Tobject _ -> Or_error.error_string "not handled: Tobject" -+ | Tfield _ -> Or_error.error_string "not handled: Tfield" -+ | Tpackage _ -> Or_error.error_string "not handled: Tpackage" -+ | Tpoly _ -> Or_error.error_string "not handled: Tpoly" - | Tlink e -> walk e.desc -- | Tsubst e -> walk e.desc -+ | Tsubst (e, _) -> walk e.desc - | Ttuple es -> - let%bind tuple = List.map es ~f:(fun e -> walk e.desc) |> Or_error.all in - (match tuple with diff --git a/pkgs/development/ocaml-modules/lwt/ppx.nix b/pkgs/development/ocaml-modules/lwt/ppx.nix index 1ba21af864bb1..2881560c6f8d9 100644 --- a/pkgs/development/ocaml-modules/lwt/ppx.nix +++ b/pkgs/development/ocaml-modules/lwt/ppx.nix @@ -2,11 +2,10 @@ buildDunePackage { pname = "lwt_ppx"; - version = "2.0.2"; + version = "2.1.0"; + duneVersion = "3"; - useDune2 = true; - - minimumOCamlVersion = "4.04"; + minimalOCamlVersion = "4.04"; # `lwt_ppx` has a different release cycle than Lwt, but it's included in # one of its release bundles. @@ -18,8 +17,8 @@ buildDunePackage { src = fetchFromGitHub { owner = "ocsigen"; repo = "lwt"; - rev = "5.4.0"; - sha256 = "sha256-rRivROVbQbXkHWen1n8+9AwrRJaOK0Fhyilw29T7was="; + rev = "5.6.0"; + hash = "sha256-DLQupCkZ14kOuSQatbb7j07I+jvvDCKpdlaR3rijT4s="; }; propagatedBuildInputs = [ lwt ppxlib ]; diff --git a/pkgs/development/ocaml-modules/ocsipersist/default.nix b/pkgs/development/ocaml-modules/ocsipersist/default.nix index 8006477dad96e..447c4f11d7f9e 100644 --- a/pkgs/development/ocaml-modules/ocsipersist/default.nix +++ b/pkgs/development/ocaml-modules/ocsipersist/default.nix @@ -5,7 +5,8 @@ buildDunePackage { pname = "ocsipersist"; - inherit (ocsipersist-lib) src version useDune2; + inherit (ocsipersist-lib) src version; + duneVersion = "3"; buildInputs = [ ocsipersist-pgsql diff --git a/pkgs/development/ocaml-modules/ocsipersist/lib.nix b/pkgs/development/ocaml-modules/ocsipersist/lib.nix index a2abc5d9b399e..33b0868802411 100644 --- a/pkgs/development/ocaml-modules/ocsipersist/lib.nix +++ b/pkgs/development/ocaml-modules/ocsipersist/lib.nix @@ -6,7 +6,7 @@ buildDunePackage rec { pname = "ocsipersist-lib"; version = "1.1.0"; - useDune2 = true; + duneVersion = "3"; src = fetchFromGitHub { owner = "ocsigen"; diff --git a/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix b/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix index e93c8b4790359..e2d95e7434ef1 100644 --- a/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix +++ b/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix @@ -7,7 +7,8 @@ buildDunePackage { pname = "ocsipersist-pgsql"; - inherit (ocsipersist-lib) version src useDune2; + inherit (ocsipersist-lib) version src; + duneVersion = "3"; propagatedBuildInputs = [ lwt_log diff --git a/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix b/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix index 2cfa30bc908e6..696863e9fd66e 100644 --- a/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix +++ b/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix @@ -7,7 +7,8 @@ buildDunePackage { pname = "ocsipersist-sqlite"; - inherit (ocsipersist-lib) version src useDune2; + inherit (ocsipersist-lib) version src; + duneVersion = "3"; propagatedBuildInputs = [ lwt_log diff --git a/pkgs/development/php-packages/composer/default.nix b/pkgs/development/php-packages/composer/default.nix index c723f201a2b05..943cd1287ef71 100644 --- a/pkgs/development/php-packages/composer/default.nix +++ b/pkgs/development/php-packages/composer/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, unzip, lib, php }: let pname = "composer"; - version = "2.4.4"; + version = "2.5.0"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://getcomposer.org/download/${version}/composer.phar"; - sha256 = "sha256-wlLCoiGZVviAif/CQrQsjLkwCjaP04kNY5QOT8llI0U="; + sha256 = "tXFhDlRReF92OJoI6VddkcPW44/uHfepcI/jBwE8hCQ="; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/mongodb/default.nix b/pkgs/development/php-packages/mongodb/default.nix index 7c4150a5cf796..a2784b09d13b7 100644 --- a/pkgs/development/php-packages/mongodb/default.nix +++ b/pkgs/development/php-packages/mongodb/default.nix @@ -14,8 +14,8 @@ buildPecl { pname = "mongodb"; - version = "1.14.2"; - sha256 = "1amayawrkyl1f44b8qwvm9567nxxfpv12pkn65adgjbwk5ds6z3g"; + version = "1.15.0"; + sha256 = "sha256-7rYmjTS9C0o9zGDd5OSE9c9PokOco9nwJMAADpnuckA="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index 26a3d7451a943..23a13707b9b2c 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.2.29"; + version = "9.2.30"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-Yso47p4d8buJTdXOrm7luvtxpFu+oTFhqTBueQaXqII="; + hash = "sha256-zl4qk/cDRISzTNK+fapxGr5yzugueAD3erzzUA51BJI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index a9357f7943c84..356d4d8bee426 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -31,7 +31,7 @@ buildPythonPackage rec { pname = "angr"; - version = "9.2.29"; + version = "9.2.30"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -40,7 +40,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-cAruoJhQpxK/+sRcyoLoBlG35b11UV2Tjwt2+QUx46E="; + hash = "sha256-UCXxKCvxzGr/c4WuAAFLfEp2QOlKD3n8tqSGI4fjEDo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-compat/default.nix b/pkgs/development/python-modules/ansible-compat/default.nix index f92423fde31a5..e1d69c6f9f8b6 100644 --- a/pkgs/development/python-modules/ansible-compat/default.nix +++ b/pkgs/development/python-modules/ansible-compat/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "ansible-compat"; - version = "2.2.5"; + version = "2.2.7"; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-KMfFRf1g75wwWc+y/v0n+S2wkf9rWGj4PxIc614f4bU="; + sha256 = "sha256-CN7dzQodxrqr5nSwfG/4ghGEksEj0oH1bwGQUnGn/8Q="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-doctor/default.nix b/pkgs/development/python-modules/ansible-doctor/default.nix index bac3c2e883d64..d05d730a467ad 100644 --- a/pkgs/development/python-modules/ansible-doctor/default.nix +++ b/pkgs/development/python-modules/ansible-doctor/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "ansible-doctor"; - version = "1.4.7"; + version = "1.4.8"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "thegeeklab"; repo = "ansible-doctor"; rev = "refs/tags/v${version}"; - hash = "sha256-FTDbQ9RZs1XleferFS8BAioWP0iWyHrDbytY68q/0tQ="; + hash = "sha256-A4SqDEArnRG9SJTqU/C9TOQO2vjot+hfj2/PKB/JMfw="; }; pythonRelaxDeps = true; diff --git a/pkgs/development/python-modules/ansible-later/default.nix b/pkgs/development/python-modules/ansible-later/default.nix index b383453f7b925..7c57bdfe983c1 100644 --- a/pkgs/development/python-modules/ansible-later/default.nix +++ b/pkgs/development/python-modules/ansible-later/default.nix @@ -14,6 +14,7 @@ , pytest-mock , python-json-logger , pytestCheckHook +, pythonRelaxDepsHook , pythonOlder , pyyaml , toolz @@ -23,7 +24,7 @@ buildPythonPackage rec { pname = "ansible-later"; - version = "2.0.23"; + version = "3.0.1"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -32,23 +33,29 @@ buildPythonPackage rec { owner = "thegeeklab"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-FQnyWC7d9h8Ya2BlaTGTrNXkHtJJLdeNL7qXP7scLFA="; + hash = "sha256-pYNL9G4A45IE6hZcihPICYfOzd5hH6Xqy0EYyBajbxQ="; }; postPatch = '' substituteInPlace pyproject.toml \ --replace 'version = "0.0.0"' 'version = "${version}"' \ - --replace " --cov=ansiblelater --cov-report=xml:coverage.xml --cov-report=term --cov-append --no-cov-on-fail" "" \ - --replace 'PyYAML = "6.0"' 'PyYAML = "*"' \ - --replace 'unidiff = "0.7.3"' 'unidiff = "*"' \ - --replace 'jsonschema = "' 'jsonschema = "^' \ - --replace 'python-json-logger = "' 'python-json-logger = "^' \ - --replace 'toolz = "0.11.2' 'toolz = "*' \ - --replace 'yamllint = "' 'yamllint = "^' + --replace " --cov=ansiblelater --cov-report=xml:coverage.xml --cov-report=term --cov-append --no-cov-on-fail" "" ''; + pythonRelaxDeps = [ + "flake8" + "jsonschema" + "pathspec" + "python-json-logger" + "pyyaml" + "toolz" + "unidiff" + "yamllint" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -84,6 +91,7 @@ buildPythonPackage rec { meta = with lib; { description = "Best practice scanner for Ansible roles and playbooks"; homepage = "https://github.com/thegeeklab/ansible-later"; + changelog = "https://github.com/thegeeklab/ansible-later/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ tboerger ]; }; diff --git a/pkgs/development/python-modules/aocd/default.nix b/pkgs/development/python-modules/aocd/default.nix index eb33639b8b8f3..00c8450ba0bb8 100644 --- a/pkgs/development/python-modules/aocd/default.nix +++ b/pkgs/development/python-modules/aocd/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "aocd"; - version = "1.3.1"; + version = "1.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "wimglenn"; repo = "advent-of-code-data"; rev = "refs/tags/v${version}"; - hash = "sha256-xns//QAAYw9+Md0THUxFUxnqCDoS1qGslX6CFbIALng="; + hash = "sha256-yY8ItXZZp0yVs4viJzduMPq8Q8NKd34uvlGaVUE2GjQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix b/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix index 5f5a24600dec4..47ec470dfde99 100644 --- a/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix +++ b/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "appthreat-vulnerability-db"; - version = "4.2.0"; + version = "4.3.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "AppThreat"; repo = "vulnerability-db"; rev = "refs/tags/v${version}"; - hash = "sha256-uZkPQYuF8EbX5+Qyj7CjxJhpT+DywCSwbORKXqaY0z8="; + hash = "sha256-1WBaNTARe0ULWHf0g/6Jljo1yCffnJAS9ycbhGqzOUk="; }; propagatedBuildInputs = [ @@ -36,7 +36,7 @@ buildPythonPackage rec { packageurl-python semver tabulate - ]; + ] ++ httpx.optional-dependencies.http2; checkInputs = [ pytestCheckHook diff --git a/pkgs/development/python-modules/apycula/default.nix b/pkgs/development/python-modules/apycula/default.nix index 0e68a347d46b8..4347fd925dc16 100644 --- a/pkgs/development/python-modules/apycula/default.nix +++ b/pkgs/development/python-modules/apycula/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "apycula"; - version = "0.5.1"; + version = "0.6.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "Apycula"; - hash = "sha256-icyIvnvHJSZKI59c3YexHoqDPf8Phhn9+x17Wr17aQ8="; + hash = "sha256-/XQ/Q4/LzCBDaTindbBENOh5OSIH2JPLyiYFWT9DcP4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/arabic-reshaper/default.nix b/pkgs/development/python-modules/arabic-reshaper/default.nix index 88675337b4cd8..de1ea1c190d7c 100644 --- a/pkgs/development/python-modules/arabic-reshaper/default.nix +++ b/pkgs/development/python-modules/arabic-reshaper/default.nix @@ -1,26 +1,48 @@ -{ lib, buildPythonPackage, fetchPypi, future, configparser, isPy27 }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, fonttools +, future +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { - pname = "arabic_reshaper"; - version = "2.1.3"; + pname = "arabic-reshaper"; + version = "2.1.4"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "a236fc6e9dde2a61cc6a5ca962b522e42694e1bb2a2d86894ed7a4eba4ce1890"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "mpcabd"; + repo = "python-arabic-reshaper"; + rev = "v${version}"; + hash = "sha256-qQGIC/KequOQZoxwm7AEkdPV0QpS7YoBV9v8ZA7AYQM="; }; - propagatedBuildInputs = [ future ] - ++ lib.optionals isPy27 [ configparser ]; + propagatedBuildInputs = [ + future + ]; + + passthru.optional-dependencies = { + with-fonttools = [ + fonttools + ]; + }; - # Tests are not published on pypi - doCheck = false; + checkInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "arabic_reshaper" ]; + pythonImportsCheck = [ + "arabic_reshaper" + ]; meta = with lib; { - homepage = "https://github.com/mpcabd/python-arabic-reshaper"; description = "Reconstruct Arabic sentences to be used in applications that don't support Arabic"; - platforms = platforms.unix; + homepage = "https://github.com/mpcabd/python-arabic-reshaper"; + license = with licenses; [ mit ]; maintainers = with maintainers; [ freezeboy ]; }; } diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index 714e57f6eb478..aa283b601e5e2 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.2.29"; + version = "9.2.30"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-kS7NTlZnWwcvuRV/Eq3K0MJ/bGYcR5BWIbdPONuTqII="; + hash = "sha256-IJr5Xk/0n5AfoUAQfI6DrMJ3ulCttKZkVgFZ42C3poE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/atenpdu/default.nix b/pkgs/development/python-modules/atenpdu/default.nix index cb2c01d1ff4b0..e95e2811eda8d 100644 --- a/pkgs/development/python-modules/atenpdu/default.nix +++ b/pkgs/development/python-modules/atenpdu/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "atenpdu"; - version = "0.3.6"; + version = "0.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-cl7PZdIdLGvoYd5x7QyjkTBc+pVB9F7En9sxcUoX34Q="; + hash = "sha256-mn44nChWy6z/B+gLc3MDndkRb2+geoojT/4AqwKpLXM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/atsim_potentials/default.nix b/pkgs/development/python-modules/atsim_potentials/default.nix index d77dbfa4aae28..9b6f9cf26ac56 100644 --- a/pkgs/development/python-modules/atsim_potentials/default.nix +++ b/pkgs/development/python-modules/atsim_potentials/default.nix @@ -14,14 +14,14 @@ }: buildPythonPackage rec { - version = "0.4.0"; + version = "0.4.1"; pname = "atsim-potentials"; src = fetchFromGitHub { owner = "mjdrushton"; repo = pname; - rev = version; - sha256 = "sha256-MwjRVd54qa8uJOi9yRXU+Vrve50ndftJUl+TFZKVzQM="; + rev = "refs/tags/${version}"; + sha256 = "sha256-G7lNqwEUwAT0f7M2nUTCxpXOAl6FWKlh7tcsvbur1eM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/awscrt/default.nix b/pkgs/development/python-modules/awscrt/default.nix index 85ce9deba6cfc..9ebf947c7346f 100644 --- a/pkgs/development/python-modules/awscrt/default.nix +++ b/pkgs/development/python-modules/awscrt/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "awscrt"; - version = "0.15.1"; + version = "0.16.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-2VBdad9NL19eW2Djot2gkynyjSCUvG4f0KnEub6M0vg="; + hash = "sha256-j9++euxSsvf6ZLkVJtyGdlOx6WWrAXEOczqwypYZkXA="; }; buildInputs = lib.optionals stdenv.isDarwin [ @@ -33,11 +33,6 @@ buildPythonPackage rec { "strictoverflow" ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "extra_link_args += ['-Wl,-fatal_warnings']" "" - ''; - # gcc <10 is not supported, LLVM on darwin is just fine nativeBuildInputs = [ cmake @@ -58,6 +53,7 @@ buildPythonPackage rec { meta = with lib; { homepage = "https://github.com/awslabs/aws-crt-python"; + changelog = "https://github.com/awslabs/aws-crt-python/releases/tag/v${version}"; description = "Python bindings for the AWS Common Runtime"; license = licenses.asl20; maintainers = with maintainers; [ davegallant ]; diff --git a/pkgs/development/python-modules/beancount-black/default.nix b/pkgs/development/python-modules/beancount-black/default.nix new file mode 100644 index 0000000000000..81bc8bc058222 --- /dev/null +++ b/pkgs/development/python-modules/beancount-black/default.nix @@ -0,0 +1,48 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, pythonOlder +, beancount-parser +, click +, poetry-core +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "beancount-black"; + version = "0.1.13"; + + disabled = pythonOlder "3.9"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "LaunchPlatform"; + repo = "beancount-black"; + rev = version; + sha256 = "sha256-jhcPR+5+e8d9cbcXC//xuBwmZ14xtXNlYtmH5yNSU0E="; + }; + + buildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + beancount-parser + click + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "beancount_black" + ]; + + meta = with lib; { + description = "Opinioned code formatter for Beancount"; + homepage = "https://github.com/LaunchPlatform/beancount-black/"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ ambroisie ]; + }; +} diff --git a/pkgs/development/python-modules/beancount-parser/default.nix b/pkgs/development/python-modules/beancount-parser/default.nix new file mode 100644 index 0000000000000..743fcec49f936 --- /dev/null +++ b/pkgs/development/python-modules/beancount-parser/default.nix @@ -0,0 +1,46 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, pythonOlder +, lark +, poetry-core +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "beancount-parser"; + version = "0.1.21"; + + disabled = pythonOlder "3.9"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "LaunchPlatform"; + repo = "beancount-parser"; + rev = version; + sha256 = "sha256-0uhH75OEjC9iA0XD0VX7CGoRIP/hpM4y+53JnyXgZpA="; + }; + + buildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + lark + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "beancount_parser" + ]; + + meta = with lib; { + description = "Standalone Lark based Beancount syntax parser"; + homepage = "https://github.com/LaunchPlatform/beancount-parser/"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ ambroisie ]; + }; +} diff --git a/pkgs/development/python-modules/bluetooth-data-tools/default.nix b/pkgs/development/python-modules/bluetooth-data-tools/default.nix index 42c6965302f66..460f143d8761a 100644 --- a/pkgs/development/python-modules/bluetooth-data-tools/default.nix +++ b/pkgs/development/python-modules/bluetooth-data-tools/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "bluetooth-data-tools"; - version = "0.3.0"; + version = "0.3.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-bZ2kT9yIIHFd3/INIuJh3MdKzF8NCYNeVS/Egg5+S7I="; + hash = "sha256-MMsg1laEk9cKU4oMhjKI47ulLNaGPH6QjAdx/wuAvMM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/boltztrap2/default.nix b/pkgs/development/python-modules/boltztrap2/default.nix index ae467123e9bc7..04cf75a76d1fc 100644 --- a/pkgs/development/python-modules/boltztrap2/default.nix +++ b/pkgs/development/python-modules/boltztrap2/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "boltztrap2"; - version = "22.6.1"; + version = "22.12.1"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -23,7 +23,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "BoltzTraP2"; inherit version; - hash = "sha256-zEKRsNg5P+KKQCeB49TiiSXRmusvr1zwssHhppZdkfA="; + hash = "sha256-gzjWAMUJcF5AyDS1Qx7opVbYewaqGgmFMDGWCh/2Wz4="; }; dontUseCmakeConfigure = true; diff --git a/pkgs/development/python-modules/bootstrapped-pip/default.nix b/pkgs/development/python-modules/bootstrapped-pip/default.nix index 812ff1a64cb6c..d2cefade9c44a 100644 --- a/pkgs/development/python-modules/bootstrapped-pip/default.nix +++ b/pkgs/development/python-modules/bootstrapped-pip/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { postPatch = '' mkdir -p $out/bin - '' + pip.postPatch; + '' + (pip.postPatch or ""); # `pip` does not necessarily have a `postPatch` field. nativeBuildInputs = [ makeWrapper unzip ]; buildInputs = [ python ]; diff --git a/pkgs/development/python-modules/btsmarthub_devicelist/default.nix b/pkgs/development/python-modules/btsmarthub_devicelist/default.nix new file mode 100644 index 0000000000000..540155c07c62c --- /dev/null +++ b/pkgs/development/python-modules/btsmarthub_devicelist/default.nix @@ -0,0 +1,44 @@ +{ + lib, + buildPythonPackage, + fetchFromGitHub, + pytestCheckHook, + pythonOlder, + requests, + responses, +}: +buildPythonPackage rec { + pname = "btsmarthub_devicelist"; + version = "0.2.3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "jxwolstenholme"; + repo = "btsmarthub_devicelist"; + rev = "${version}"; + hash = "sha256-7ncxCpY+A2SuSFa3k21QchrmFs1dPRUMb1r1z/laa6M="; + }; + + propagatedBuildInputs = [ + requests + ]; + + checkInputs = [ + responses + requests + pytestCheckHook + ]; + + disabledTests = [ + "test_btsmarthub2_detection_neither_router_present" + ]; + + meta = with lib; { + description = "Retrieve a list of devices from a bt smarthub or bt smarthub 2 on a local network"; + homepage = "https://github.com/jxwolstenholme/btsmarthub_devicelist"; + license = licenses.mit; + maintainers = with maintainers; [jamiemagee]; + }; +} diff --git a/pkgs/development/python-modules/caio/default.nix b/pkgs/development/python-modules/caio/default.nix index 28ba5a2f4d194..e140cf22925c8 100644 --- a/pkgs/development/python-modules/caio/default.nix +++ b/pkgs/development/python-modules/caio/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "caio"; - version = "0.9.8"; + version = "0.9.11"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "mosquito"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-hUG5EaraoKj3D3K+Qm2Nm1AFe19qwRy/FnEb1SXWKDM="; + hash = "sha256-BFlpjbC2yxwGtCAMfn1VM5zmioyN5fFNMJDDWceB+LE="; }; checkInputs = [ @@ -32,6 +32,7 @@ buildPythonPackage rec { meta = with lib; { description = "File operations with asyncio support"; homepage = "https://github.com/mosquito/caio"; + changelog = "https://github.com/mosquito/caio/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/casbin/default.nix b/pkgs/development/python-modules/casbin/default.nix index 19444ee49f628..ccd1df2d93ef5 100644 --- a/pkgs/development/python-modules/casbin/default.nix +++ b/pkgs/development/python-modules/casbin/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "casbin"; - version = "1.17.4"; + version = "1.17.5"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = pname; repo = "pycasbin"; rev = "refs/tags/v${version}"; - hash = "sha256-idcqNWocy4dDh7zv3gz81wHp+9WX5PptXGHI9uqM69M="; + hash = "sha256-PLtIxA3XD9Mi33zRfciocJUml1HqGsWGITlLUKAJUss="; }; propagatedBuildInputs = [ @@ -37,6 +37,7 @@ buildPythonPackage rec { meta = with lib; { description = "Authorization library that supports access control models like ACL, RBAC and ABAC"; homepage = "https://github.com/casbin/pycasbin"; + changelog = "https://github.com/casbin/pycasbin/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ costrouc ]; }; diff --git a/pkgs/development/python-modules/cirq-core/default.nix b/pkgs/development/python-modules/cirq-core/default.nix index e9328079b717b..34604cc495b96 100644 --- a/pkgs/development/python-modules/cirq-core/default.nix +++ b/pkgs/development/python-modules/cirq-core/default.nix @@ -31,7 +31,7 @@ buildPythonPackage rec { pname = "cirq-core"; - version = "1.0.0"; + version = "1.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -39,8 +39,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "quantumlib"; repo = "cirq"; - rev = "v${version}"; - hash = "sha256-KJ+z4zGrdGIXcGZzqHtWMf8aAzcn9CtltFawcHVldMQ="; + rev = "refs/tags/v${version}"; + hash = "sha256-5j4hbG95KRfRQTyyZgoNp/eHIcy0FphyEhbYnzyUMO4="; }; sourceRoot = "source/${pname}"; diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index 7fb0cba7820ef..7cb8a96dc2402 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.2.29"; + version = "9.2.30"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-X2c1TVbf/KTUOfjQ8Izt+vyxhQrAki3hCBBwKxgkxbw="; + hash = "sha256-cN9Mfi572JFH3lfgLp9nnkO+wOUmDfiEtqZUA0U2JEw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index 9a4180f0fd083..24d6ede50306e 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -16,7 +16,7 @@ let # The binaries are following the argr projects release cycle - version = "9.2.29"; + version = "9.2.30"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -38,7 +38,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-fK0j6+UqQVadQPU34oLp50gB+/0YnNnNg/rGuIt5I54="; + hash = "sha256-ZLMbV4H1JWfnMlSsN1nZhQVmsEyJF2sIii0sSOxe+2E="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/coqpit/default.nix b/pkgs/development/python-modules/coqpit/default.nix index 12e1a46025a9f..aee115f5e0c54 100644 --- a/pkgs/development/python-modules/coqpit/default.nix +++ b/pkgs/development/python-modules/coqpit/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "coqpit"; - version = "0.0.16"; + version = "0.0.17"; format = "setuptools"; src = fetchFromGitHub { owner = "coqui-ai"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-f1FLjR4VzSOA/VaeseVA4F1NWVJIvokIZIDW1k7fNqU="; + sha256 = "sha256-FY3PYd8dY5HFKkhD6kBzPt0k1eFugdqsO3yIN4oDk3E="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/dacite/default.nix b/pkgs/development/python-modules/dacite/default.nix index ba74695fb5ea4..12b14b226def7 100644 --- a/pkgs/development/python-modules/dacite/default.nix +++ b/pkgs/development/python-modules/dacite/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "dacite"; - version = "1.6.0"; + version = "1.7.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -16,19 +16,14 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "konradhalas"; repo = pname; - rev = "v${version}"; - sha256 = "0nv2bnj3bq2v08ac4p583cnpjq2d6bv5isycgji5i5wg1y082a3d"; + rev = "refs/tags/v${version}"; + hash = "sha256-+yWvlJcOmqDkHl3JZfPnIV3C4ieSo4FiBvoUZ0+J4N0="; }; checkInputs = [ pytestCheckHook ]; - disabledTests = lib.optionals (pythonAtLeast "3.10") [ - # https://github.com/konradhalas/dacite/issues/167 - "test_from_dict_with_union_and_wrong_data" - ]; - pythonImportsCheck = [ "dacite" ]; @@ -36,6 +31,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python helper to create data classes from dictionaries"; homepage = "https://github.com/konradhalas/dacite"; + changelog = "https://github.com/konradhalas/dacite/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/datasette/default.nix b/pkgs/development/python-modules/datasette/default.nix index 8394befc51e64..91517c564f917 100644 --- a/pkgs/development/python-modules/datasette/default.nix +++ b/pkgs/development/python-modules/datasette/default.nix @@ -29,7 +29,7 @@ buildPythonPackage rec { pname = "datasette"; - version = "0.63.2"; + version = "0.63.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -38,7 +38,7 @@ buildPythonPackage rec { owner = "simonw"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-VDmh2Q/ab5xaNbj0APuQ9pkZ+GHoNXW2crrJXi556Fk="; + sha256 = "sha256-SnUhF7QOXwCU288L4BB4JnhtP6XyHsBS1PpaFM32J0w="; }; postPatch = '' diff --git a/pkgs/development/python-modules/devolo-plc-api/default.nix b/pkgs/development/python-modules/devolo-plc-api/default.nix index 640c06a7bcc36..4b7e1c21e4b3c 100644 --- a/pkgs/development/python-modules/devolo-plc-api/default.nix +++ b/pkgs/development/python-modules/devolo-plc-api/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "devolo-plc-api"; - version = "0.8.1"; + version = "0.9.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "2Fake"; repo = "devolo_plc_api"; rev = "v${version}"; - sha256 = "sha256-Gjs4x52LwCsE0zAJjLO1N0w5r1jDJkZoVY1JVZB8bmE="; + sha256 = "sha256-FBcDEEWgfV+OgHriSOZKWZPt0O89nDe2CsY3oqX/6zo="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/django-celery-results/default.nix b/pkgs/development/python-modules/django-celery-results/default.nix new file mode 100644 index 0000000000000..1cb4b0f3b81f7 --- /dev/null +++ b/pkgs/development/python-modules/django-celery-results/default.nix @@ -0,0 +1,35 @@ +{ lib +, fetchPypi +, buildPythonPackage +, celery +, django +, pythonOlder +}: + +buildPythonPackage rec { + pname = "django_celery_results"; + version = "2.4.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-dapRlw21aRy/JCxqD/UMjN9BniZc0Om3cjNdBkNsS5k="; + }; + + propagatedBuildInputs = [ + celery + django + ]; + + # Tests need access to a database. + doCheck = false; + + meta = with lib; { + description = "Celery result back end with django"; + homepage = "https://github.com/celery/django-celery-results"; + license = licenses.bsd3; + maintainers = with maintainers; [ babariviere ]; + }; +} diff --git a/pkgs/development/python-modules/django-stubs-ext/default.nix b/pkgs/development/python-modules/django-stubs-ext/default.nix index 883e979b1d373..0fb43a1dca56c 100644 --- a/pkgs/development/python-modules/django-stubs-ext/default.nix +++ b/pkgs/development/python-modules/django-stubs-ext/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "django-stubs-ext"; - version = "0.5.0"; + version = "0.7.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-m9dBg3arALf4jW1Wvp/s6Fv6DHw0isYhFV+k16kRRvI="; + sha256 = "sha256-T9jNvGjRpCHyG7fg2edtUPaktQTTULp4ZAXa9TbpDCE="; }; # setup.cfg tries to pull in nonexistent LICENSE.txt file diff --git a/pkgs/development/python-modules/dparse2/default.nix b/pkgs/development/python-modules/dparse2/default.nix index d3b61574cf8a0..2fbb2e1f3f722 100644 --- a/pkgs/development/python-modules/dparse2/default.nix +++ b/pkgs/development/python-modules/dparse2/default.nix @@ -4,13 +4,13 @@ , pythonOlder , toml , pyyaml -, packaging +, packvers , pytestCheckHook }: buildPythonPackage rec { pname = "dparse2"; - version = "0.6.1"; + version = "0.7.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,14 +18,14 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "nexB"; repo = pname; - rev = version; - hash = "sha256-1tbNW7Gy7gvMnETdAM2ahHiwbhG9qvdYZggia1+7eGo="; + rev = "refs/tags/${version}"; + hash = "sha256-JUTL+SVf1RRIXQqwFR7MnExsgGseSiO0a5YzzcqdXHw="; }; propagatedBuildInputs = [ toml pyyaml - packaging + packvers ]; checkInputs = [ @@ -44,6 +44,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module to parse Python dependency files"; homepage = "https://github.com/nexB/dparse2"; + changelog = "https://github.com/nexB/dparse2/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/easy-thumbnails/default.nix b/pkgs/development/python-modules/easy-thumbnails/default.nix index 896b50416db1f..8572a5f10306e 100644 --- a/pkgs/development/python-modules/easy-thumbnails/default.nix +++ b/pkgs/development/python-modules/easy-thumbnails/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "easy-thumbnails"; - version = "2.8.3"; + version = "2.8.4"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ij7GG7jHL6x/degRqW4815QqyJyrVasWVJ1tLOnN6qU="; + hash = "sha256-aqR3zg9zvtopOzTGMUo/K3jBtFzK6a2fqknjncfzQ2k="; }; propagatedBuildInputs = [ @@ -38,6 +38,7 @@ buildPythonPackage rec { meta = with lib; { description = "Easy thumbnails for Django"; homepage = "https://github.com/SmileyChris/easy-thumbnails"; + changelog = "https://github.com/SmileyChris/easy-thumbnails/blob/${version}/CHANGES.rst"; license = licenses.bsd3; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/elegy/default.nix b/pkgs/development/python-modules/elegy/default.nix index d4df308e679c4..290442d5152a8 100644 --- a/pkgs/development/python-modules/elegy/default.nix +++ b/pkgs/development/python-modules/elegy/default.nix @@ -5,8 +5,9 @@ , deepmerge , dm-haiku , fetchFromGitHub +, fetchpatch , jaxlib -, poetry +, poetry-core , pytestCheckHook , pythonOlder , pyyaml @@ -35,6 +36,14 @@ buildPythonPackage rec { hash = "sha256-FZmLriYhsX+zyQKCtCjbOy6MH+AvjzHRNUyaDSXGlLI="; }; + patches = [ + (fetchpatch { + name = "use-poetry-core.patch"; + url = "https://github.com/poets-ai/elegy/commit/0ed472882f470ed9eb7a63b8a537ffabe7e19aa7.patch"; + hash = "sha256-nO/imHo7tEsiZh+64CF/M4eXQ1so3IunVhv8CvYP1ks="; + }) + ]; + # The cloudpickle constraint is too strict. wandb is marked as an optional # dependency but `buildPythonPackage` doesn't seem to respect that setting. # Python constraint: https://github.com/poets-ai/elegy/issues/244 @@ -46,7 +55,7 @@ buildPythonPackage rec { ''; nativeBuildInputs = [ - poetry + poetry-core ]; buildInputs = [ diff --git a/pkgs/development/python-modules/expecttest/default.nix b/pkgs/development/python-modules/expecttest/default.nix index 6892a7bcb63a6..82128d8b0b021 100644 --- a/pkgs/development/python-modules/expecttest/default.nix +++ b/pkgs/development/python-modules/expecttest/default.nix @@ -8,17 +8,17 @@ buildPythonPackage rec { pname = "expecttest"; - version = "0.1.3"; + version = "0.1.4"; format = "pyproject"; src = fetchFromGitHub { owner = "ezyang"; repo = pname; rev = "v${version}"; - hash = "sha256-5CnpVFSbf3FcAa06Y7atG8sxu8uevpfrliB2HuVcrx0="; + hash = "sha256-BFM0jFWXfH72n9XuFtU9URW8LWGPVJncXniBV5547W4="; }; - buildInputs = [ poetry-core ]; + nativeBuildInputs = [ poetry-core ]; checkInputs = [ hypothesis pytestCheckHook ]; diff --git a/pkgs/development/python-modules/fire/default.nix b/pkgs/development/python-modules/fire/default.nix index 252b180c4e065..bec9599793539 100644 --- a/pkgs/development/python-modules/fire/default.nix +++ b/pkgs/development/python-modules/fire/default.nix @@ -1,26 +1,44 @@ -{ lib, buildPythonPackage, fetchFromGitHub, six, hypothesis, mock -, python-Levenshtein, pytest, termcolor, isPy27, enum34 }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, six +, hypothesis +, mock +, python-Levenshtein +, pytestCheckHook +, termcolor +, pythonOlder +}: buildPythonPackage rec { pname = "fire"; - version = "0.4.0"; + version = "0.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "google"; repo = "python-fire"; - rev = "v${version}"; - sha256 = "1caz6j2kdhj0kccrnqri6b4g2d6wzkkx8y9vxyvm7axvrwkv2vyn"; + rev = "refs/tags/v${version}"; + hash = "sha256-cwY1RRNtpAn6LnBASQLTNf4XXSPnfhOa1WgglGEM2/s="; }; - propagatedBuildInputs = [ six termcolor ] ++ lib.optional isPy27 enum34; + propagatedBuildInputs = [ + six + termcolor + ]; - checkInputs = [ hypothesis mock python-Levenshtein pytest ]; + checkInputs = [ + hypothesis + mock + python-Levenshtein + pytestCheckHook + ]; - # ignore test which asserts exact usage statement, default behavior - # changed in python3.8. This can likely be remove >=0.3.1 - checkPhase = '' - py.test -k 'not testInitRequiresFlag' - ''; + pythonImportsCheck = [ + "fire" + ]; meta = with lib; { description = "A library for automatically generating command line interfaces"; @@ -42,6 +60,8 @@ buildPythonPackage rec { REPL with the modules and variables you'll need already imported and created. ''; + homepage = "https://github.com/google/python-fire"; + changelog = "https://github.com/google/python-fire/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ leenaars ]; }; diff --git a/pkgs/development/python-modules/gcal-sync/default.nix b/pkgs/development/python-modules/gcal-sync/default.nix index 110b04f658dfa..d2cd8b7740e19 100644 --- a/pkgs/development/python-modules/gcal-sync/default.nix +++ b/pkgs/development/python-modules/gcal-sync/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "gcal-sync"; - version = "4.0.4"; + version = "4.1.0"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "allenporter"; repo = "gcal_sync"; rev = "refs/tags/${version}"; - hash = "sha256-g0hnwUX33qZ36JgKx3KHP3BciYujQ+Eahe6bF3m87FM="; + hash = "sha256-dmxqN0SE/qAu07ilBnVdV8k3hvpfUPLMtIfqlhSg20U="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/gios/default.nix b/pkgs/development/python-modules/gios/default.nix index 5597238626257..674af37074300 100644 --- a/pkgs/development/python-modules/gios/default.nix +++ b/pkgs/development/python-modules/gios/default.nix @@ -12,7 +12,8 @@ buildPythonPackage rec { pname = "gios"; - version = "2.1.0"; + version = "2.3.0"; + format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +21,7 @@ buildPythonPackage rec { owner = "bieniu"; repo = pname; rev = version; - sha256 = "sha256-WjuDsu0EA+KtErusw5VADyvleVegXHCTEkuQ1lU/SRU="; + hash = "sha256-/lAENP9wKZ+h2Iq2e9S7s7Naa0CTl/I2cwCxBEAwsrA="; }; propagatedBuildInputs = [ @@ -47,11 +48,14 @@ buildPythonPackage rec { "test_invalid_station_id" ]; - pythonImportsCheck = [ "gios" ]; + pythonImportsCheck = [ + "gios" + ]; meta = with lib; { description = "Python client for getting air quality data from GIOS"; homepage = "https://github.com/bieniu/gios"; + changelog = "https://github.com/bieniu/gios/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/google-cloud-monitoring/default.nix b/pkgs/development/python-modules/google-cloud-monitoring/default.nix index d6d3f5f9815d2..935d82a410a24 100644 --- a/pkgs/development/python-modules/google-cloud-monitoring/default.nix +++ b/pkgs/development/python-modules/google-cloud-monitoring/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-monitoring"; - version = "2.11.3"; + version = "2.12.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Nm27yxdf6woQoP37CeNrHggM2Wobv9W9JrmTlx5A4uY="; + hash = "sha256-J0I8P+5BQq1igzKEGtccv66KxPTrzmPErtpx3ornk24="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-spanner/default.nix b/pkgs/development/python-modules/google-cloud-spanner/default.nix index 2704b357004c3..e5e32526a1cbb 100644 --- a/pkgs/development/python-modules/google-cloud-spanner/default.nix +++ b/pkgs/development/python-modules/google-cloud-spanner/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "google-cloud-spanner"; - version = "3.24.0"; + version = "3.26.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Ko/9gfcR7BBX+U60vlWgdh4d1xptUJRRyWmAGq6a4/E="; + hash = "sha256-d4FJCW0tTVgb+JTL386bYwmSlwEGAGSJAovsNs8kjaI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/griffe/default.nix b/pkgs/development/python-modules/griffe/default.nix index e01bf4678ca1d..3c1b875b5836b 100644 --- a/pkgs/development/python-modules/griffe/default.nix +++ b/pkgs/development/python-modules/griffe/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "griffe"; - version = "0.25.0"; + version = "0.25.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "mkdocstrings"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-LOxk1qQmFJ9gzr6M+Q48KKQmkjuKMxKgrc5ZSbNSFHo="; + hash = "sha256-DBjwqQ7tmvpHa0FZYS6Jsb/wQ7cnoynhybBWl9PNejs="; }; postPatch = '' diff --git a/pkgs/development/python-modules/hahomematic/default.nix b/pkgs/development/python-modules/hahomematic/default.nix index 0ca4e6acc4b66..566a1f56c20cb 100644 --- a/pkgs/development/python-modules/hahomematic/default.nix +++ b/pkgs/development/python-modules/hahomematic/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "hahomematic"; - version = "2022.12.4"; + version = "2022.12.8"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "danielperna84"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-/JX9YlH642MbCs2ChMKFiD0+e5eWUTeY5o9EsUGgbl8="; + sha256 = "sha256-//dhOrA+DxqJTqVOcmdCtEZeZ3NkeGT/cAsFbZVTw20="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/hole/default.nix b/pkgs/development/python-modules/hole/default.nix index 3175a8fabb580..37ac10cdfcafa 100644 --- a/pkgs/development/python-modules/hole/default.nix +++ b/pkgs/development/python-modules/hole/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "hole"; - version = "0.7.0"; + version = "0.8.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-yZpzGfB5RTWaRn2DmT+cbSDC0pL16FyUc0Nr/V6TlhU="; + hash = "sha256-zkghLJe1SzN2qOeL23+T2ISjGkuODd9tJA1tO3hw2a0="; }; propagatedBuildInputs = [ @@ -33,6 +33,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python API for interacting with a Pihole instance."; homepage = "https://github.com/home-assistant-ecosystem/python-hole"; + changelog = "https://github.com/home-assistant-ecosystem/python-hole/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/httpie/default.nix b/pkgs/development/python-modules/httpie/default.nix index 143822de63b97..8cf09df8bad73 100644 --- a/pkgs/development/python-modules/httpie/default.nix +++ b/pkgs/development/python-modules/httpie/default.nix @@ -50,8 +50,8 @@ buildPythonPackage rec { requests-toolbelt setuptools rich - pysocks - ]; + ] ++ requests.optional-dependencies.socks; + checkInputs = [ pytest-httpbin @@ -64,10 +64,9 @@ buildPythonPackage rec { postInstall = '' # install completions - installShellCompletion --bash \ - --name http.bash extras/httpie-completion.bash - installShellCompletion --fish \ - --name http.fish extras/httpie-completion.fish + installShellCompletion --cmd http \ + --bash extras/httpie-completion.bash \ + --fish extras/httpie-completion.fish # convert the docs/README.md file pandoc --standalone -f markdown -t man docs/README.md -o docs/http.1 @@ -91,6 +90,19 @@ buildPythonPackage rec { disabledTests = [ # flaky "test_stdin_read_warning" + # Re-evaluate those tests with the next release + "test_duplicate_keys_support_from_response" + "test_invalid_xml" + "test_json_formatter_with_body_preceded_by_non_json_data" + "test_pretty_options_with_and_without_stream_with_converter" + "test_response_mime_overwrite" + "test_terminal_output_response_charset_detection" + "test_terminal_output_response_charset_override" + "test_terminal_output_response_content_type_charset_with_stream" + "test_terminal_output_response_content_type_charset" + "test_valid_xml" + "test_xml_format_options" + "test_xml_xhtm" ] ++ lib.optionals stdenv.isDarwin [ # flaky "test_daemon_runner" @@ -99,7 +111,8 @@ buildPythonPackage rec { meta = with lib; { description = "A command line HTTP client whose goal is to make CLI human-friendly"; homepage = "https://httpie.org/"; + changelog = "https://github.com/httpie/httpie/blob/${version}/CHANGELOG.md"; license = licenses.bsd3; - maintainers = with maintainers; [ antono relrod schneefux SuperSandro2000 ]; + maintainers = with maintainers; [ antono relrod schneefux ]; }; } diff --git a/pkgs/development/python-modules/huawei-lte-api/default.nix b/pkgs/development/python-modules/huawei-lte-api/default.nix index d15381c5608ec..ec68ae8dc9ef8 100644 --- a/pkgs/development/python-modules/huawei-lte-api/default.nix +++ b/pkgs/development/python-modules/huawei-lte-api/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "huawei-lte-api"; - version = "1.6.7"; + version = "1.6.9"; format = "setuptools"; disabled = pythonOlder "3.4"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "Salamek"; repo = "huawei-lte-api"; rev = "refs/tags/${version}"; - hash = "sha256-CMGOR5b8Uc8ZIuMlkCkxZqTqUA/Im2RgXK4uFZdoHeU="; + hash = "sha256-8a+6q1XBgI0+J0Tb2xn3fMeiZbB9djiwPnfY3RFhIg4="; }; postPatch = '' diff --git a/pkgs/development/python-modules/ical/default.nix b/pkgs/development/python-modules/ical/default.nix index bb4668c5cbed7..5ec01565e2d1f 100644 --- a/pkgs/development/python-modules/ical/default.nix +++ b/pkgs/development/python-modules/ical/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "ical"; - version = "4.2.3"; + version = "4.2.8"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "allenporter"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-Af08Xnf5PNWTzRfRENSixVlfcqrvhSuutGxoDzHG4dk="; + hash = "sha256-vOjsHGB1VJuBEfLAXUkvTbQSFi4mkpf9qROVZo3ZABY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/identify/default.nix b/pkgs/development/python-modules/identify/default.nix index 149cb32cbdd84..d9e35db651144 100644 --- a/pkgs/development/python-modules/identify/default.nix +++ b/pkgs/development/python-modules/identify/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "identify"; - version = "2.5.10"; + version = "2.5.11"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "pre-commit"; repo = pname; rev = "v${version}"; - sha256 = "sha256-4/p2m2A+0RDxQZHAJFSqk4x49bMWQo4R3aDOu3jI6FQ="; + sha256 = "sha256-KnOPrJoHaT0XMhv2HoGKt+a6bsLHouCqZqdl1LlB+9g="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/json-rpc/default.nix b/pkgs/development/python-modules/json-rpc/default.nix index e475c3117df30..fe15a5383d089 100644 --- a/pkgs/development/python-modules/json-rpc/default.nix +++ b/pkgs/development/python-modules/json-rpc/default.nix @@ -4,11 +4,11 @@ let pythonEnv = lib.optional isPy27 mock; in buildPythonPackage rec { pname = "json-rpc"; - version = "1.13.0"; + version = "1.14.0"; src = fetchPypi { inherit pname version; - sha256 = "12bmblnznk174hqg2irggx4hd3cq1nczbwkpsqqzr13hbg7xpw6y"; + sha256 = "sha256-/13xx/2G4dvQJZ8GWZdRzpGnx5DykEFHk6Vlq1ht3FI="; }; checkInputs = pythonEnv ++ [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/keyring/default.nix b/pkgs/development/python-modules/keyring/default.nix index 6ff68d42caaa0..3815610dadbb1 100644 --- a/pkgs/development/python-modules/keyring/default.nix +++ b/pkgs/development/python-modules/keyring/default.nix @@ -14,13 +14,13 @@ buildPythonPackage rec { pname = "keyring"; - version = "23.11.0"; + version = "23.13.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-rRkiY+LN1fEodd7cLaE1NDWafnYOd/jQS1CWioIcI2E="; + hash = "sha256-ui4VqbNeIZCNCq9OCkesxS1q4zRE3w2itJ1BpG721ng="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/labelbox/default.nix b/pkgs/development/python-modules/labelbox/default.nix index 08a1fa5ca5eae..15c533c91fceb 100644 --- a/pkgs/development/python-modules/labelbox/default.nix +++ b/pkgs/development/python-modules/labelbox/default.nix @@ -1,65 +1,103 @@ { lib , backoff -, backports-datetime-fromisoformat , buildPythonPackage , fetchFromGitHub +, geojson , google-api-core -, jinja2 +, imagesize , ndjson +, numpy +, opencv + # , opencv-python +, packaging , pillow , pydantic + # , pygeotile +, pyproj , pytest-cases , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , rasterio , requests , shapely +, tqdm +, typeguard +, typing-extensions }: buildPythonPackage rec { pname = "labelbox"; - version = "3.24.1"; + version = "3.33.1"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "Labelbox"; repo = "labelbox-python"; rev = "refs/tags/v.${version}"; - sha256 = "sha256-pcIbCtVOr6pwodgNv8aGZ+k2Z9cQPCQm1UBJWJAlj/o="; + hash = "sha256-lYhgBELeVtNUp6ZvcSTIeKp2YkaGt6MH8BbzSERGHXw="; }; + postPatch = '' + substituteInPlace pytest.ini \ + --replace "-s -vv -x --reruns 5 --reruns-delay 10 --durations=20" "-s -vv -x --durations=20" + ''; + + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "backoff" + ]; + propagatedBuildInputs = [ backoff - backports-datetime-fromisoformat google-api-core - jinja2 ndjson - pillow pydantic - rasterio requests - shapely + tqdm ]; - postPatch = '' - substituteInPlace setup.py --replace "pydantic==1.8" "pydantic>=1.8" - ''; + passthru.optional-dependencies = { + data = [ + shapely + geojson + numpy + pillow + # opencv-python + typeguard + imagesize + pyproj + # pygeotile + typing-extensions + packaging + ]; + }; checkInputs = [ pytest-cases pytestCheckHook - ]; + ] ++ passthru.optional-dependencies.data; disabledTestPaths = [ # Requires network access "tests/integration" + # Missing requirements + "tests/data" ]; - pythonImportsCheck = [ "labelbox" ]; + pythonImportsCheck = [ + "labelbox" + ]; meta = with lib; { description = "Platform API for LabelBox"; homepage = "https://github.com/Labelbox/labelbox-python"; + changelog = "https://github.com/Labelbox/labelbox-python/blob/v.${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ rakesh4g ]; }; diff --git a/pkgs/development/python-modules/lupupy/default.nix b/pkgs/development/python-modules/lupupy/default.nix index 95d5948a42754..ef17ba8f40e3a 100644 --- a/pkgs/development/python-modules/lupupy/default.nix +++ b/pkgs/development/python-modules/lupupy/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "lupupy"; - version = "0.2.3"; + version = "0.2.4"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-GR/sCR8BkqfSLCftLrCAaSYYcaYugX3ItM55+KcghL8="; + hash = "sha256-11BdMhUhxbzkSrBEFdqpjkgcOcCZG498ylEHIMbomW4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/lxmf/default.nix b/pkgs/development/python-modules/lxmf/default.nix index 080ce93389330..229d3dfdaa9ed 100644 --- a/pkgs/development/python-modules/lxmf/default.nix +++ b/pkgs/development/python-modules/lxmf/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "lxmf"; - version = "0.2.6"; + version = "0.2.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "lxmf"; rev = "refs/tags/${version}"; - hash = "sha256-3kjg0Q7nXMSjBq2suPtIUvUEGCJr6pTo53ZbjMC5uZ0="; + hash = "sha256-JSr9qLyRg0pMZHuvfo/ZO9/Hwl7ZHTrMGkrcejVRweY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/masky/default.nix b/pkgs/development/python-modules/masky/default.nix index 65108feb4320e..3a1ea574e62fb 100644 --- a/pkgs/development/python-modules/masky/default.nix +++ b/pkgs/development/python-modules/masky/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "masky"; - version = "0.1.1"; + version = "0.1.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Z4kSec"; repo = "Masky"; rev = "refs/tags/v${version}"; - hash = "sha256-uxq4SBudxFbBiV3Cu+oBRKezIWf5p+8VJlIIqQjtSXA="; + hash = "sha256-awPPpdw6/zlVa7/DY1iafrbqIHJERN5+cfX1bTnCjl0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mongoquery/default.nix b/pkgs/development/python-modules/mongoquery/default.nix new file mode 100644 index 0000000000000..c6034ce27614f --- /dev/null +++ b/pkgs/development/python-modules/mongoquery/default.nix @@ -0,0 +1,33 @@ +{ lib +, buildPythonPackage +, fetchPypi +, six +, isPy27 +}: + +buildPythonPackage rec { + pname = "mongoquery"; + version = "1.4.2"; + + disabled = isPy27; + + src = fetchPypi { + inherit pname version; + sha256 = "bd19fc465f0aa9feb3070f144fde41fc68cf28ea32dd3b7565f7df3ab6fc0ac2"; + }; + + propagatedBuildInputs = [ + six + ]; + + pythonImportsCheck = [ + "mongoquery" + ]; + + meta = with lib; { + description = "A python implementation of mongodb queries"; + homepage = "https://github.com/kapouille/mongoquery"; + license = with licenses; [ unlicense ]; + maintainers = with maintainers; [ misuzu ]; + }; +} diff --git a/pkgs/development/python-modules/msgspec/default.nix b/pkgs/development/python-modules/msgspec/default.nix index d11338a0f0708..140221e3c66ae 100644 --- a/pkgs/development/python-modules/msgspec/default.nix +++ b/pkgs/development/python-modules/msgspec/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "msgspec"; - version = "0.10.1"; + version = "0.11.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "jcrist"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-/tu29RIszjzYQKeyYe+8Zkud3L/HBoWdXdpNcilWERs="; + hash = "sha256-g02IvD8ktWvt1BjeoGXIf+YNnLtQ2ALCIW4uomeCe4E="; }; # Requires libasan to be accessible diff --git a/pkgs/development/python-modules/mypy-boto3-builder/default.nix b/pkgs/development/python-modules/mypy-boto3-builder/default.nix index 9ae495cf55e2b..d9253d5ce02b1 100644 --- a/pkgs/development/python-modules/mypy-boto3-builder/default.nix +++ b/pkgs/development/python-modules/mypy-boto3-builder/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "mypy-boto3-builder"; - version = "7.12.0"; + version = "7.12.2"; format = "pyproject"; disabled = pythonOlder "3.10"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "youtype"; repo = "mypy_boto3_builder"; rev = "refs/tags/${version}"; - hash = "sha256-YmWQZvSABE0IKvISJWeB0rYryZ9FNTCgS7/lE2/sO04="; + hash = "sha256-G9Y37QC6Co4tUemtmOf5Dawt0VWopWT5/Np0J7sF10k="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/nibe/default.nix b/pkgs/development/python-modules/nibe/default.nix index 09188adba6250..329aa4d2d0ef2 100644 --- a/pkgs/development/python-modules/nibe/default.nix +++ b/pkgs/development/python-modules/nibe/default.nix @@ -5,6 +5,7 @@ , async-timeout , buildPythonPackage , construct +, exceptiongroup , fetchFromGitHub , pytest-asyncio , pytestCheckHook @@ -15,7 +16,7 @@ buildPythonPackage rec { pname = "nibe"; - version = "1.5.0"; + version = "1.6.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -24,7 +25,7 @@ buildPythonPackage rec { owner = "yozik04"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-X2WcyBjJbS2WuaaYeBpWM+Tw4mmFOjNX/s070u8LN/4="; + hash = "sha256-6pQsVGb26FpoV2LgOrs+Cfq2rATRqbljrVJ+NsZUSuc="; }; nativeBuildInputs = [ @@ -35,6 +36,7 @@ buildPythonPackage rec { async-modbus async-timeout construct + exceptiongroup tenacity ]; diff --git a/pkgs/development/python-modules/nomadnet/default.nix b/pkgs/development/python-modules/nomadnet/default.nix index eeb9ebe59e213..120aa896aaab6 100644 --- a/pkgs/development/python-modules/nomadnet/default.nix +++ b/pkgs/development/python-modules/nomadnet/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "nomadnet"; - version = "0.2.8"; + version = "0.3.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "NomadNet"; rev = "refs/tags/${version}"; - hash = "sha256-Vzi+v+M0LfptNq/6nc3usnf3YLzBwYcij2hAt835Or8="; + hash = "sha256-bpMv7dFX6hQoR8uG8IRy8JaDGLlU50hOPAI6jWmlMWI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/openapi-core/default.nix b/pkgs/development/python-modules/openapi-core/default.nix index ea3780c8af318..509e5a2184dd0 100644 --- a/pkgs/development/python-modules/openapi-core/default.nix +++ b/pkgs/development/python-modules/openapi-core/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "openapi-core"; - version = "0.16.2"; + version = "0.16.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -36,7 +36,7 @@ buildPythonPackage rec { owner = "p1c2u"; repo = "openapi-core"; rev = "refs/tags/${version}"; - hash = "sha256-i1MeKPVWowB12gE4kIWBjq6zvn2aIVW4ZDK8bKNAP1o="; + hash = "sha256-aej82CXk0bCE5W0+uuSVSvC08D5yoXv0h1wcoABWRoI="; }; postPatch = '' @@ -91,12 +91,8 @@ buildPythonPackage rec { ++ passthru.optional-dependencies.requests; disabledTestPaths = [ - # AttributeError: 'str' object has no attribute '__name__' - #"tests/integration/validation" # Requires secrets and additional configuration "tests/integration/contrib/django/" - # Unable to detect SECRET_KEY and ROOT_URLCONF - "tests/integration/contrib/django/" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/opensensemap-api/default.nix b/pkgs/development/python-modules/opensensemap-api/default.nix index 56edc136c44f3..4cce64c43008d 100644 --- a/pkgs/development/python-modules/opensensemap-api/default.nix +++ b/pkgs/development/python-modules/opensensemap-api/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "opensensemap-api"; - version = "0.2.0"; + version = "0.3.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-KSukSPpSbfbEEqTq4zqqo8OT7ptdPrGy2QyQYjErQWI="; + hash = "sha256-lz2G7vXUadhTFgfHpIq9kHfojf+iytjitFZZ7rgqeO8="; }; propagatedBuildInputs = [ @@ -23,7 +23,7 @@ buildPythonPackage rec { async-timeout ]; - # no tests are present + # Module has no tests doCheck = false; pythonImportsCheck = [ @@ -37,6 +37,7 @@ buildPythonPackage rec { available information from the sensor can be retrieved. ''; homepage = "https://github.com/home-assistant-ecosystem/python-opensensemap-api"; + changelog = "https://github.com/home-assistant-ecosystem/python-opensensemap-api/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/packvers/default.nix b/pkgs/development/python-modules/packvers/default.nix new file mode 100644 index 0000000000000..aae2c0246362f --- /dev/null +++ b/pkgs/development/python-modules/packvers/default.nix @@ -0,0 +1,44 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pretend +, pyparsing +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "packvers"; + version = "21.5"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "nexB"; + repo = pname; + rev = "refs/tags/${version}"; + hash = "sha256-nCSYL0g7mXi9pGFt24pOXbmmYsaRuB+rRZrygf8DTLE="; + }; + + propagatedBuildInputs = [ + pyparsing + ]; + + checkInputs = [ + pretend + pytestCheckHook + ]; + + pythonImportsCheck = [ + "packvers" + ]; + + meta = with lib; { + description = "Module for version handling of modules"; + homepage = "https://github.com/nexB/dparse2"; + changelog = "https://github.com/nexB/packvers/blob/${version}/CHANGELOG.rst"; + license = with licenses; [ asl20 /* and */ bsd2 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pep8-naming/default.nix b/pkgs/development/python-modules/pep8-naming/default.nix index 7e9642a2bc280..5fd696523d845 100644 --- a/pkgs/development/python-modules/pep8-naming/default.nix +++ b/pkgs/development/python-modules/pep8-naming/default.nix @@ -1,31 +1,25 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , flake8 , python +, pythonOlder }: buildPythonPackage rec { pname = "pep8-naming"; - version = "0.13.1"; + version = "0.13.3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "PyCQA"; repo = pname; rev = version; - sha256 = "sha256-NG4hLZcOMKprUyMnzkHRmUCFGyYgvT6ydBQNpgWE9h0="; + hash = "sha256-l7zZUOMWyTxnTbkFkzfABY/eVMKnv0kNJ0UPzJo0W1Y="; }; - patches = [ - # Fixes tests for flake8 => 5 - # Remove on next release - (fetchpatch { - url = "https://github.com/PyCQA/pep8-naming/commit/c8808a0907f64b5d081cff8d3f9443e5ced1474e.patch"; - sha256 = "sha256-4c+a0viS0rXuxj+TuIfgrKZjnrjiJjDoYBbNp3+6Ed0="; - }) - ]; - propagatedBuildInputs = [ flake8 ]; @@ -41,8 +35,9 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://github.com/PyCQA/pep8-naming"; description = "Check PEP-8 naming conventions, plugin for flake8"; + homepage = "https://github.com/PyCQA/pep8-naming"; + changelog = "https://github.com/PyCQA/pep8-naming/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ eadwu ]; }; diff --git a/pkgs/development/python-modules/plantuml-markdown/default.nix b/pkgs/development/python-modules/plantuml-markdown/default.nix index 25b56e2a42543..6da64c191315c 100644 --- a/pkgs/development/python-modules/plantuml-markdown/default.nix +++ b/pkgs/development/python-modules/plantuml-markdown/default.nix @@ -11,7 +11,7 @@ }: let pname = "plantuml-markdown"; - version = "3.6.3"; + version = "3.7.3"; in buildPythonPackage { inherit pname version; @@ -20,7 +20,7 @@ buildPythonPackage { owner = "mikitex70"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-y5Z7mjx2+DW8DwSSyy3tLn11rB7daQyyjsoY/QoI6mc="; + sha256 = "sha256-iRIHq4GmYzNq11t61Lz69amOoG54j50Mc32NsaLNHOk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/proxmoxer/default.nix b/pkgs/development/python-modules/proxmoxer/default.nix index c2c47964a00ec..4246cc0fed453 100644 --- a/pkgs/development/python-modules/proxmoxer/default.nix +++ b/pkgs/development/python-modules/proxmoxer/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "proxmoxer"; - version = "2.0.0"; + version = "2.0.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-phCeJkiY8XxaD4VQCxOzoInkwWQzHU7ZGdHvxNVgifU="; + hash = "sha256-kwD6yJhVTaVAAUVA6k4r6HZy4w+MPDF7DfJBS8wGE/c="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/psrpcore/default.nix b/pkgs/development/python-modules/psrpcore/default.nix index 09c624bbdc1d3..ec3bfb1d8d54d 100644 --- a/pkgs/development/python-modules/psrpcore/default.nix +++ b/pkgs/development/python-modules/psrpcore/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "psrpcore"; - version = "0.2.0"; + version = "0.2.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "jborean93"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-uX99BsQn1Ckl+2Lt4I0EMZLTKeDrX0mtSc9w5aFpvxQ="; + hash = "sha256-KMSyqXKhNH+i9Y0Mx3DHCwJZOkl4Va2n0zu0TEitslU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pulumi-aws/default.nix b/pkgs/development/python-modules/pulumi-aws/default.nix index 7ff24f974ee4f..9bcbf7c5c56f5 100644 --- a/pkgs/development/python-modules/pulumi-aws/default.nix +++ b/pkgs/development/python-modules/pulumi-aws/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pulumi-aws"; # Version is independant of pulumi's. - version = "5.23.0"; + version = "5.24.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "pulumi"; repo = "pulumi-aws"; rev = "refs/tags/v${version}"; - hash = "sha256-YT667WBOnObGpagml9xAj6N+Kdhq3rhx0XspJJXhrUE="; + hash = "sha256-u7tBP9ZETcDsPx562ZMr9I23iGoHsSlhUu382KU1lcE="; }; sourceRoot = "${src.name}/sdk/python"; diff --git a/pkgs/development/python-modules/pyatv/default.nix b/pkgs/development/python-modules/pyatv/default.nix index 644c346e4b0c8..eb960cc49fd87 100644 --- a/pkgs/development/python-modules/pyatv/default.nix +++ b/pkgs/development/python-modules/pyatv/default.nix @@ -14,6 +14,7 @@ , pytest-asyncio , pytest-timeout , pytestCheckHook +, pythonRelaxDepsHook , pythonOlder , requests , srptools @@ -25,24 +26,39 @@ buildPythonPackage rec { version = "0.10.3"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "postlund"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ng5KfW93p2/N2a6lnGbRJC6aWOQgTl0imBLdUIUlDic="; + hash = "sha256-ng5KfW93p2/N2a6lnGbRJC6aWOQgTl0imBLdUIUlDic="; }; postPatch = '' substituteInPlace setup.py \ --replace "pytest-runner" "" - # Remove all version pinning - - substituteInPlace base_versions.txt \ - --replace "protobuf==3.19.1,<4" "protobuf>=3.19.0,<4" ''; + pythonRelaxDeps = [ + "aiohttp" + "async_timeout" + "bitarray" + "chacha20poly1305-reuseable" + "cryptography" + "ifaddr" + "mediafile" + "miniaudio" + "protobuf" + "requests" + "srptools" + "zeroconf" + ]; + + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + propagatedBuildInputs = [ aiohttp bitarray @@ -72,6 +88,7 @@ buildPythonPackage rec { disabledTestPaths = [ # Test doesn't work in the sandbox "tests/protocols/companion/test_companion_auth.py" + "tests/protocols/mrp/test_mrp_auth.py" ]; __darwinAllowLocalNetworking = true; @@ -83,7 +100,8 @@ buildPythonPackage rec { meta = with lib; { description = "Python client library for the Apple TV"; homepage = "https://github.com/postlund/pyatv"; + changelog = "https://github.com/postlund/pyatv/blob/v${version}/CHANGES.md"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ fab ]; }; } diff --git a/pkgs/development/python-modules/pyinfra/default.nix b/pkgs/development/python-modules/pyinfra/default.nix index 96a0be843c561..dea53f6bb091d 100644 --- a/pkgs/development/python-modules/pyinfra/default.nix +++ b/pkgs/development/python-modules/pyinfra/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pyinfra"; - version = "2.5.3"; + version = "2.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "Fizzadar"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-1buLaBhhmc4FnROr5M+bqSlsbkfjl58a1/4qWBXE97Y="; + hash = "sha256-SNeucJvjnwQ0o+gukXwEKybBaW01hPtYXCFcPeOuXA8="; }; propagatedBuildInputs = [ @@ -64,6 +64,7 @@ buildPythonPackage rec { ad-hoc command execution, service deployment, configuration management and more. ''; homepage = "https://github.com/Fizzadar/pyinfra"; + changelog = "https://github.com/Fizzadar/pyinfra/blob/v${version}/CHANGELOG.md"; maintainers = with maintainers; [ totoroot ]; license = licenses.mit; }; diff --git a/pkgs/development/python-modules/pyisy/default.nix b/pkgs/development/python-modules/pyisy/default.nix index f6f812b96f862..26dab5b1c77ba 100644 --- a/pkgs/development/python-modules/pyisy/default.nix +++ b/pkgs/development/python-modules/pyisy/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "pyisy"; - version = "3.0.8"; + version = "3.0.9"; src = fetchFromGitHub { owner = "automicus"; repo = "PyISY"; rev = "refs/tags/v${version}"; - hash = "sha256-Q3KewvZJMq4YKrpS6ir5rqZkDhxGACDIhlbr3b6lDAs="; + hash = "sha256-95MUOxWR4YUce0fFcasKc6YjoSHTGhXJcUAg0mbXxCs="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyrainbird/default.nix b/pkgs/development/python-modules/pyrainbird/default.nix index 5461dc44523ab..11e7b778a4515 100644 --- a/pkgs/development/python-modules/pyrainbird/default.nix +++ b/pkgs/development/python-modules/pyrainbird/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , parameterized , pycryptodome +, pytest-aiohttp , pytestCheckHook , pythonOlder , pyyaml @@ -13,7 +14,7 @@ buildPythonPackage rec { pname = "pyrainbird"; - version = "0.6.3"; + version = "0.7.1"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -22,7 +23,7 @@ buildPythonPackage rec { owner = "jbarrancos"; repo = pname; rev = version; - hash = "sha256-yGUBCs1IxbGKBo21gExFIqDawM2EHlO+jiRqonEUnPk="; + hash = "sha256-pN/QILpXJoQAccB7CSDLxCDYfijf/VJbYw+NRUI4kvs="; }; postPatch = '' @@ -41,6 +42,7 @@ buildPythonPackage rec { checkInputs = [ parameterized + pytest-aiohttp pytestCheckHook requests-mock responses @@ -53,6 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module to interact with Rainbird controllers"; homepage = "https://github.com/jbarrancos/pyrainbird/"; + changelog = "https://github.com/jbarrancos/pyrainbird/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/pysmart/default.nix b/pkgs/development/python-modules/pysmart/default.nix index 5c576e4895ffe..afc4ae3a7fd82 100644 --- a/pkgs/development/python-modules/pysmart/default.nix +++ b/pkgs/development/python-modules/pysmart/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pysmart"; - version = "1.2.1"; + version = "1.2.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "truenas"; repo = "py-SMART"; rev = "refs/tags/v${version}"; - hash = "sha256-slLk4zoW0ht9hiOxyBt0caekjrPgih9G99pRiD2vIxE="; + hash = "sha256-qZJwUxU9LSKXpftBuKFnxI4gygHIuJEwGJqFaBlCudc="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyswitchbot/default.nix b/pkgs/development/python-modules/pyswitchbot/default.nix index 45ade78085845..8100fcea5157b 100644 --- a/pkgs/development/python-modules/pyswitchbot/default.nix +++ b/pkgs/development/python-modules/pyswitchbot/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyswitchbot"; - version = "0.27.1"; + version = "0.30.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "pySwitchbot"; rev = "refs/tags/${version}"; - hash = "sha256-2ef2a8Ru3fl0mdVBy4CDObd22z0u4AF2V9FvhSfR9B4="; + hash = "sha256-5Rn1hQ1TZhRiCJGJCaA1sl+HnerL/oOhRdMiSl1Recg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-cinderclient/default.nix b/pkgs/development/python-modules/python-cinderclient/default.nix index af09d9327b211..8fd4e3d8fb82a 100644 --- a/pkgs/development/python-modules/python-cinderclient/default.nix +++ b/pkgs/development/python-modules/python-cinderclient/default.nix @@ -17,11 +17,11 @@ buildPythonPackage rec { pname = "python-cinderclient"; - version = "9.1.0"; + version = "9.2.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+bMK8ubm5aEmwsgfNRRcWu5wwglV5t1AmRm+TRuHs0M="; + sha256 = "sha256-qnYodaJwr0kFfKyofVsDTmMLMYDexqGTz8uSefPWPfQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-crontab/default.nix b/pkgs/development/python-modules/python-crontab/default.nix index 9de0801d53754..644d00fb337c2 100644 --- a/pkgs/development/python-modules/python-crontab/default.nix +++ b/pkgs/development/python-modules/python-crontab/default.nix @@ -1,22 +1,40 @@ -{ lib, buildPythonPackage, fetchPypi, python-dateutil, pytestCheckHook }: +{ lib +, buildPythonPackage +, fetchPypi +, python-dateutil +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { pname = "python-crontab"; - version = "2.6.0"; + version = "2.7.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "1e35ed7a3cdc3100545b43e196d34754e6551e7f95e4caebbe0e1c0ca41c2f1b"; + hash = "sha256-shr0ZHx7u4SP7y8CBhbGsCidy5+UtPmRpVMQ/5vsV0k="; }; - checkInputs = [ pytestCheckHook ]; + propagatedBuildInputs = [ + python-dateutil + ]; + + checkInputs = [ + pytestCheckHook + ]; + disabledTests = [ "test_07_non_posix_shell" # doctest that assumes /tmp is writeable, awkward to patch "test_03_usage" ]; - propagatedBuildInputs = [ python-dateutil ]; + pythonImportsCheck = [ + "crontab" + ]; meta = with lib; { description = "Python API for crontab"; @@ -24,7 +42,7 @@ buildPythonPackage rec { Crontab module for reading and writing crontab files and accessing the system cron automatically and simply using a direct API. ''; - homepage = "https://pypi.org/project/python-crontab/"; + homepage = "https://gitlab.com/doctormo/python-crontab/"; license = licenses.lgpl3Plus; maintainers = with maintainers; [ kfollesdal ]; }; diff --git a/pkgs/development/python-modules/pytibber/default.nix b/pkgs/development/python-modules/pytibber/default.nix index 0e25985cf3375..5ad8815509ac6 100644 --- a/pkgs/development/python-modules/pytibber/default.nix +++ b/pkgs/development/python-modules/pytibber/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "pytibber"; - version = "0.26.5"; + version = "0.26.6"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "pyTibber"; rev = "refs/tags/${version}"; - hash = "sha256-YW+Oi/ORXjeFLQfeVxCKgyRGBVx4TZKGeKMCgYkEIzo="; + hash = "sha256-A/P59fhXlMu1QF1Nc7zeE9q4KgS6ABe7FraZWZPYDys="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pytorch-metric-learning/default.nix b/pkgs/development/python-modules/pytorch-metric-learning/default.nix index 5ff9f64a4dcc2..239652685e5a2 100644 --- a/pkgs/development/python-modules/pytorch-metric-learning/default.nix +++ b/pkgs/development/python-modules/pytorch-metric-learning/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pytorch-metric-learning"; - version = "1.6.2"; + version = "1.6.3"; disabled = isPy27; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "KevinMusgrave"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-y/KqMqxSzTGsjwtbhHbFK+S4CX6yHC6tR6jdPWUzeGg="; + sha256 = "sha256-7ezD3TMmNI9wRBXz5Htz10XZZaSsD0jTpEldGpIot8k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pytube/default.nix b/pkgs/development/python-modules/pytube/default.nix index c9ee34c05c69c..d619c04d9b4e8 100644 --- a/pkgs/development/python-modules/pytube/default.nix +++ b/pkgs/development/python-modules/pytube/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "pytube"; - version = "12.1.0"; + version = "12.1.2"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "pytube"; repo = "pytube"; rev = "v${version}"; - hash = "sha256-o4kfZLkEs+XYor2sS2lfuDZkPfHrB+rDoxroc4f55gc="; + hash = "sha256-Y4mriCwFvwAZ3e8kHKo9/S2vReb4q+b8KTHxtQo8SEw="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index 672a70e091def..0e609c59d2a60 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.2.29"; + version = "9.2.30"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-buqtEiifBKbR7FP08ne5v0nWqkO+d2cVHxNCCZJDrdU="; + hash = "sha256-lSjO8GLJN5pAOEusw0Uak7DsEE11MVexyRvkiLbkAjA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyvicare/default.nix b/pkgs/development/python-modules/pyvicare/default.nix index 96ecf628cb14d..c594059500dd8 100644 --- a/pkgs/development/python-modules/pyvicare/default.nix +++ b/pkgs/development/python-modules/pyvicare/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pyvicare"; - version = "2.21.0"; + version = "2.22.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "somm15"; repo = "PyViCare"; rev = version; - sha256 = "sha256-zAm1kN5oRVzoRElIabeMmZYuZQHqrgNqHxbVv/UbN/8="; + sha256 = "sha256-1Vfdp0JOqDlt07BCTJXcJ1V0kTzGwCR0ccnGlCYgtEM="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/pyvisa/default.nix b/pkgs/development/python-modules/pyvisa/default.nix index 3fb0bbd51cec9..a0c86f9225499 100644 --- a/pkgs/development/python-modules/pyvisa/default.nix +++ b/pkgs/development/python-modules/pyvisa/default.nix @@ -5,17 +5,20 @@ , setuptools , typing-extensions , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "pyvisa"; - version = "1.12.0"; + version = "1.13.0"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "pyvisa"; repo = "pyvisa"; rev = "refs/tags/${version}"; - hash = "sha256-2khTfj0RRna9YDPOs5kQHHhkeMwv3kTtGyDBYnu+Yhw="; + hash = "sha256-TBu3Xko0IxFBT2vzrsOxqEG3y4XfPzISEtbkWkIaCvM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyvmomi/default.nix b/pkgs/development/python-modules/pyvmomi/default.nix index a2f475f3b3146..4f07951be5db0 100644 --- a/pkgs/development/python-modules/pyvmomi/default.nix +++ b/pkgs/development/python-modules/pyvmomi/default.nix @@ -1,24 +1,43 @@ -{ lib, buildPythonPackage, fetchFromGitHub, requests, six }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, requests +, six +, pythonOlder +}: buildPythonPackage rec { pname = "pyvmomi"; - version = "7.0.3"; + version = "8.0.0.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "vmware"; repo = pname; - rev = "v${version}"; - sha256 = "07jwlbi3k5kvpmgygvpkhsnbdp9m2ndwqxk9k6kyzfszwcbdx4bk"; + rev = "refs/tags/v${version}"; + hash = "sha256-DVqC5giVMixj9NlGJ2gaH7ybX3hdQsdNTjuTkesao9E="; }; - # requires old version of vcrpy + propagatedBuildInputs = [ + requests + six + ]; + + # Requires old version of vcrpy doCheck = false; - propagatedBuildInputs = [ requests six ]; + pythonImportsCheck = [ + "pyVim" + "pyVmomi" + ]; meta = with lib; { description = "Python SDK for the VMware vSphere API that allows you to manage ESX, ESXi, and vCenter"; homepage = "https://github.com/vmware/pyvmomi"; + changelog = "https://github.com/vmware/pyvmomi/releases/tag/v${version}"; license = licenses.asl20; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/pywayland/default.nix b/pkgs/development/python-modules/pywayland/default.nix index 75e427f3da83c..65f998224468d 100644 --- a/pkgs/development/python-modules/pywayland/default.nix +++ b/pkgs/development/python-modules/pywayland/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "pywayland"; - version = "0.4.14"; + version = "0.4.15"; src = fetchPypi { inherit pname version; - hash = "sha256-CXJidzwFvS1ewqYyfpJhwQtqh4TtUfhO9O0iYJpOCy0="; + hash = "sha256-vz7Sjd8KT7UgOBI5AN5q6CS7jl+WL87w91cgm0bXRGw="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/qutip/default.nix b/pkgs/development/python-modules/qutip/default.nix index 519cb9957bcc8..1b8c1b8bf3829 100644 --- a/pkgs/development/python-modules/qutip/default.nix +++ b/pkgs/development/python-modules/qutip/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "qutip"; - version = "4.7.0"; + version = "4.7.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,8 +26,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = pname; repo = pname; - rev = "v${version}"; - hash = "sha256-wGr6uTM6pFL2nvN4zdqPdEO8O3kjrRtKWx8luL1t9Sw="; + rev = "refs/tags/v${version}"; + hash = "sha256-W5iqRWAB6D1Dnxz0Iyl7ZmP3yrXvLyV7BdBdIgFCiQY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/rapidfuzz/default.nix b/pkgs/development/python-modules/rapidfuzz/default.nix index e5a22879fe95d..63c5e4e39603e 100644 --- a/pkgs/development/python-modules/rapidfuzz/default.nix +++ b/pkgs/development/python-modules/rapidfuzz/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "rapidfuzz"; - version = "2.13.6"; + version = "2.13.7"; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "RapidFuzz"; rev = "refs/tags/v${version}"; - hash = "sha256-TvauQ5U3+xF01HuYsnmuPn3uqoDSg42vYk2qR9AdBIg="; + hash = "sha256-ZovXYOoLriAmJHptolD135qCn7XHeVvzLJNzI08mqwY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/rfcat/default.nix b/pkgs/development/python-modules/rfcat/default.nix index 0828287ff84ad..da4f3699a761f 100644 --- a/pkgs/development/python-modules/rfcat/default.nix +++ b/pkgs/development/python-modules/rfcat/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "rfcat"; - version = "1.9.6"; + version = "1.9.7"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "atlas0fd00m"; repo = "rfcat"; rev = "refs/tags/v${version}"; - hash = "sha256-7iYz7YY9zpnJmLfCmp/sF21eZ21HMGq2sLQIENxbr34="; + hash = "sha256-VOLA/ZZLazW7u0VYkAHzDh4aaHGr3u09bKVOkhYk6Fk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rmrl/default.nix b/pkgs/development/python-modules/rmrl/default.nix index 747fba8302b19..48a33ca47cdee 100644 --- a/pkgs/development/python-modules/rmrl/default.nix +++ b/pkgs/development/python-modules/rmrl/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , pythonOlder -, fetchPypi +, fetchFromGitHub , poetry-core , pdfrw , reportlab @@ -12,15 +12,17 @@ buildPythonPackage rec { pname = "rmrl"; - version = "0.2.1"; + version = "unstable-2022-12-11"; disabled = pythonOlder "3.7"; format = "pyproject"; - src = fetchPypi { - inherit pname version; - sha256 = "c532bef4168350e6ab17cf37c6481dc12b6a78e007c073503f082f36215b71c9"; + src = fetchFromGitHub { + owner = "naturale0"; + repo = "rmrl"; + rev = "3c908536f11dfa92f81e7127ae76f18f0b2cc3e3"; + hash = "sha256-13pMfRe2McWDpBTlJy/TBT0W5wyd0EXDoocxeIzmqCo="; }; nativeBuildInputs = [ @@ -42,7 +44,7 @@ buildPythonPackage rec { meta = { description = "Render reMarkable documents to PDF"; - homepage = "https://github.com/rschroll/rmrl"; + homepage = "https://github.com/naturale0/rmrl"; license = lib.licenses.gpl3Plus; maintainers = with lib.maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/python-modules/rns/default.nix b/pkgs/development/python-modules/rns/default.nix index 2ae91cff1a62e..92b581a7aaac2 100644 --- a/pkgs/development/python-modules/rns/default.nix +++ b/pkgs/development/python-modules/rns/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "rns"; - version = "0.4.2"; + version = "0.4.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "Reticulum"; rev = "refs/tags/${version}"; - hash = "sha256-EvlGi/HlaPq3SYJDtGLwV58BKi7EZDCSAAxlSUqwztk="; + hash = "sha256-duWlglazdvWnX4rgcaoz3JbMPIDxJfx7BFUMNEQs0q4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ropgadget/default.nix b/pkgs/development/python-modules/ropgadget/default.nix index 36bd4eaf7b903..165cfd2ebbfcc 100644 --- a/pkgs/development/python-modules/ropgadget/default.nix +++ b/pkgs/development/python-modules/ropgadget/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "ropgadget"; - version = "7.1"; + version = "7.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "JonathanSalwan"; repo = "ROPgadget"; rev = "refs/tags/v${version}"; - hash = "sha256-eVRQQ8VmjT8wTpiTK2Emr1tEpSwFJPbMc1fa2Zh3mT0="; + hash = "sha256-JvGDnMh42CbdsbE8jM3jD/4JMl6XlmkJfojvlBhFWA0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/scrapy/default.nix b/pkgs/development/python-modules/scrapy/default.nix index 3571a783af8d6..4ac91771a4735 100644 --- a/pkgs/development/python-modules/scrapy/default.nix +++ b/pkgs/development/python-modules/scrapy/default.nix @@ -95,6 +95,7 @@ buildPythonPackage rec { "test_nested_css" "test_nested_xpath" "test_flavor_detection" + "test_follow_whitespace" # Requires network access "AnonymousFTPTestCase" "FTPFeedStorageTest" diff --git a/pkgs/development/python-modules/screenlogicpy/default.nix b/pkgs/development/python-modules/screenlogicpy/default.nix index ca137888ce7cf..a31286d7a3fcd 100644 --- a/pkgs/development/python-modules/screenlogicpy/default.nix +++ b/pkgs/development/python-modules/screenlogicpy/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "screenlogicpy"; - version = "0.5.5"; + version = "0.6.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "dieselrabbit"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-1tBr7k7RutCHvea/56J7drl9P+WZ5bQpDeQwhgktc1s="; + hash = "sha256-/ePvq+jFLiIsP1w9YxMl3lbekNRaDhKMjKXoYkCOpn8="; }; checkInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python interface for Pentair Screenlogic devices"; homepage = "https://github.com/dieselrabbit/screenlogicpy"; + changelog = "https://github.com/dieselrabbit/screenlogicpy/releases/tag/v${version}"; license = with licenses; [ gpl3Only ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/sensor-state-data/default.nix b/pkgs/development/python-modules/sensor-state-data/default.nix index deb6e817ae223..b8b38a7efb6cf 100644 --- a/pkgs/development/python-modules/sensor-state-data/default.nix +++ b/pkgs/development/python-modules/sensor-state-data/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "sensor-state-data"; - version = "2.12.1"; + version = "2.13.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Ycn62qQ+IMqtuuE/wJPUDlyTiklu2WYrGD+wVXssRFg="; + hash = "sha256-iLHv2rwynpSAKlRn2ezq2VUR7v4oHNJaPg/prlkZo6U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/sensorpro-ble/default.nix b/pkgs/development/python-modules/sensorpro-ble/default.nix index 66d73b041bea3..694f93be109a5 100644 --- a/pkgs/development/python-modules/sensorpro-ble/default.nix +++ b/pkgs/development/python-modules/sensorpro-ble/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "sensorpro-ble"; - version = "0.5.0"; + version = "0.5.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "v${version}"; - hash = "sha256-B5WtOl1Va2rqm6PZEUCYakN7mE2zz/edGj+TtwDcS+Y="; + hash = "sha256-D0xHNPsGlNBoHR3LqR6TbVhqXWapzwYsG+uN3kSF1oE="; }; nativeBuildInputs = [ @@ -49,6 +49,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for Sensorpro BLE devices"; homepage = "https://github.com/Bluetooth-Devices/sensorpro-ble"; + changelog = "https://github.com/Bluetooth-Devices/sensorpro-ble/blob/v${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/sentry-sdk/default.nix b/pkgs/development/python-modules/sentry-sdk/default.nix index fbb573fa98f80..87834f6c72c76 100644 --- a/pkgs/development/python-modules/sentry-sdk/default.nix +++ b/pkgs/development/python-modules/sentry-sdk/default.nix @@ -40,7 +40,7 @@ buildPythonPackage rec { pname = "sentry-sdk"; - version = "1.12.0"; + version = "1.12.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -49,7 +49,7 @@ buildPythonPackage rec { owner = "getsentry"; repo = "sentry-python"; rev = "refs/tags/${version}"; - hash = "sha256-22GQO3y24xlbZgxNsD8eEWj/pVWcOlYiRV52jKTf7sc="; + hash = "sha256-ugCbjhOZTJ1+DeTKDTQJMIO6wjkqVL5tvPGoRrZKwGI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/skodaconnect/default.nix b/pkgs/development/python-modules/skodaconnect/default.nix index f3997a73556db..479655b3b70a9 100644 --- a/pkgs/development/python-modules/skodaconnect/default.nix +++ b/pkgs/development/python-modules/skodaconnect/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "skodaconnect"; - version = "1.1.27"; + version = "1.2.2"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,8 +20,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "lendy007"; repo = pname; - rev = "refs/tags/v${version}"; - hash = "sha256-CK5u2Nx1Z7XPDL5W24XxYCo3GfMYCAqKwxpQ8QTfQ0o="; + rev = "refs/tags/${version}"; + hash = "sha256-pBCeOp71A0uksSv4N50ZXAZeg72mT5FC4Toad/1Yc0Y="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -55,7 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module to communicate with Skoda Connect"; homepage = "https://github.com/lendy007/skodaconnect"; - changelog = "https://github.com/lendy007/skodaconnect/releases/tag/v${version}"; + changelog = "https://github.com/lendy007/skodaconnect/releases/tag/${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix b/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix index 20f182b55bafc..793bf0771b1aa 100644 --- a/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix +++ b/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix @@ -3,26 +3,33 @@ , fetchPypi , sphinx , plantuml +, pythonOlder }: buildPythonPackage rec { pname = "sphinxcontrib-plantuml"; - version = "0.24"; + version = "0.24.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-z2Xbc1j3haZJjuA+cZi2aAxiXSjlWzNHX8P2yUNRRR0="; + hash = "sha256-OdLkvEDV4JMSYSmhRPVrbuFfWM+lBItZSOY6Ea/ztYY="; }; + propagatedBuildInputs = [ + sphinx + plantuml + ]; + # No tests included. doCheck = false; - propagatedBuildInputs = [ sphinx plantuml ]; - meta = with lib; { description = "Provides a Sphinx domain for embedding UML diagram with PlantUML"; homepage = "https://github.com/sphinx-contrib/plantuml/"; - maintainers = with maintainers; [ ]; license = with licenses; [ bsd2 ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix b/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix index 1a97d85d9f02b..8c4900d35bd1c 100644 --- a/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix +++ b/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "sphinxcontrib-spelling"; - version = "7.6.2"; + version = "7.7.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-oSnV3QwAydQUvN9Zmv3bVbrgHx1UNjbn67CUkborq9Q="; + hash = "sha256-VlYcP2oVWwlGkU5N6YhymFkxVyncGBteTcimj+eN41o="; }; nativeBuildInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "Sphinx spelling extension"; homepage = "https://github.com/sphinx-contrib/spelling"; + changelog = "https://github.com/sphinx-contrib/spelling/blob/${version}/docs/source/history.rst"; license = licenses.bsd2; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/sphinxext-opengraph/default.nix b/pkgs/development/python-modules/sphinxext-opengraph/default.nix index b333d508e1065..2f5f1a58d6f79 100644 --- a/pkgs/development/python-modules/sphinxext-opengraph/default.nix +++ b/pkgs/development/python-modules/sphinxext-opengraph/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "sphinxext-opengraph"; - version = "0.7.3"; + version = "0.7.4"; src = fetchFromGitHub { owner = "wpilibsuite"; repo = "sphinxext-opengraph"; - rev = "v${version}"; - hash = "sha256-KzbtuDTMXsp9yf3hiiG6VzpUbSEm3bOtujApsG37H14="; + rev = "refs/tags/v${version}"; + hash = "sha256-N8448GHg/lR7z7Y4F4vO7z+wAeaboo8Cj0X+HSyToAA="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/spotipy/default.nix b/pkgs/development/python-modules/spotipy/default.nix index e81183c02fb30..01af1111a2412 100644 --- a/pkgs/development/python-modules/spotipy/default.nix +++ b/pkgs/development/python-modules/spotipy/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "spotipy"; - version = "2.21.0"; + version = "2.22.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-YhFhqbWqAVaBwu4buIc87i7mtEDYQEDanSpXzWf31eU="; + hash = "sha256-uLnumxbOJZ49utvHi0DzdgzcTMM9t9kwJS7HkJEhdtA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix b/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix index 8270834ab6091..a1bd6d99851f3 100644 --- a/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix +++ b/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "sqlalchemy-jsonfield"; - version = "1.0.0"; + version = "1.0.1.post0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -22,8 +22,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "penguinolog"; repo = "sqlalchemy_jsonfield"; - rev = version; - sha256 = "015pl4z84spfw8389hk1szlm37jgw2basvbmzmkacdqi0685zx24"; + rev = "refs/tags/${version}"; + sha256 = "sha256-dSvqUXZzr+s/v8QEtqrv6slI7p1akXwAxi68D9ctyuU="; }; SETUPTOOLS_SCM_PRETEND_VERSION = "v${version}"; @@ -49,8 +49,9 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://github.com/penguinolog/sqlalchemy_jsonfield"; description = "SQLALchemy JSONField implementation for storing dicts at SQL independently from JSON type support"; + homepage = "https://github.com/penguinolog/sqlalchemy_jsonfield"; + changelog = "https://github.com/penguinolog/sqlalchemy_jsonfield/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ ivan-tkatchev ]; }; diff --git a/pkgs/development/python-modules/striprtf/default.nix b/pkgs/development/python-modules/striprtf/default.nix index 0409851070037..42d99a101edbf 100644 --- a/pkgs/development/python-modules/striprtf/default.nix +++ b/pkgs/development/python-modules/striprtf/default.nix @@ -1,16 +1,19 @@ { lib , buildPythonPackage , fetchPypi +, pythonOlder }: buildPythonPackage rec { pname = "striprtf"; - version = "0.0.21"; + version = "0.0.22"; format = "setuptools"; + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - sha256 = "sha256-/wqYbdJ+OI/RTODnKB34e7zADHzCPEX0LkTausqFNtY="; + hash = "sha256-T7rb6EJPQStbJjv3L7PA2rTdtXTWCd1NCE9uK4sEQCs="; }; pythonImportsCheck = [ @@ -18,6 +21,7 @@ buildPythonPackage rec { ]; meta = with lib; { + changelog = "https://github.com/joshy/striprtf/blob/v${version}/CHANGELOG.md"; homepage = "https://github.com/joshy/striprtf"; description = "A simple library to convert rtf to text"; maintainers = with maintainers; [ aanderse ]; diff --git a/pkgs/development/python-modules/tableaudocumentapi/default.nix b/pkgs/development/python-modules/tableaudocumentapi/default.nix index ae6f374836d70..840407cfa1db9 100644 --- a/pkgs/development/python-modules/tableaudocumentapi/default.nix +++ b/pkgs/development/python-modules/tableaudocumentapi/default.nix @@ -3,29 +3,40 @@ , fetchPypi , lxml , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "tableaudocumentapi"; - version = "0.10"; + version = "0.11"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ahR+o4UgFLm/9aFsEqmlwXkcgTjqI0wU2Tl9EjVjLZs="; + hash = "sha256-g6V1UBf+P21FcZkR3PHoUmdmrQwEvjdd1VKhvNmvOys="; }; - propagatedBuildInputs = [ lxml ]; + propagatedBuildInputs = [ + lxml + ]; - checkInputs = [ pytestCheckHook ]; + checkInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "tableaudocumentapi" ]; + pythonImportsCheck = [ + "tableaudocumentapi" + ]; # ModuleNotFoundError: No module named 'test.assets' doCheck = false; meta = with lib; { - description = "A Python module for working with Tableau files"; + description = "Python module for working with Tableau files"; homepage = "https://github.com/tableau/document-api-python"; + changelog = "https://github.com/tableau/document-api-python/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ costrouc ]; }; diff --git a/pkgs/development/python-modules/tablib/default.nix b/pkgs/development/python-modules/tablib/default.nix index ae0217b0ebdc6..f07691abdca76 100644 --- a/pkgs/development/python-modules/tablib/default.nix +++ b/pkgs/development/python-modules/tablib/default.nix @@ -1,14 +1,14 @@ -{ buildPythonPackage -, lib +{ lib +, buildPythonPackage , fetchPypi -, isPy27 , odfpy , openpyxl , pandas -, setuptools-scm , pytestCheckHook -, pytest-cov +, pythonOlder , pyyaml +, setuptools-scm +, tabulate , unicodecsv , xlrd , xlwt @@ -17,26 +17,79 @@ buildPythonPackage rec { pname = "tablib"; version = "3.2.1"; - disabled = isPy27; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-pX8ncLjCJf6+wcseZQEqac8w3Si+gQ4P+Y0CR2jH0PE="; + hash = "sha256-pX8ncLjCJf6+wcseZQEqac8w3Si+gQ4P+Y0CR2jH0PE="; + }; + + postPatch = '' + substituteInPlace pytest.ini \ + --replace " --cov=tablib --cov=tests --cov-report xml --cov-report term --cov-report html" "" + ''; + + nativeBuildInputs = [ + setuptools-scm + ]; + + passthru.optional-dependencies = { + all = [ + # markuppy + odfpy + openpyxl + pandas + pyyaml + tabulate + xlrd + xlwt + ]; + cli = [ + tabulate + ]; + html = [ + # markuppy + ]; + ods = [ + odfpy + ]; + pandas = [ + pandas + ]; + xls = [ + xlrd + xlwt + ]; + xlsx = [ + openpyxl + ]; + yaml = [ + pyyaml + ]; }; - nativeBuildInputs = [ setuptools-scm ]; - propagatedBuildInputs = [ xlwt openpyxl pyyaml xlrd odfpy ]; - checkInputs = [ pytestCheckHook pytest-cov unicodecsv pandas ]; + checkInputs = [ + pandas + pytestCheckHook + unicodecsv + ]; - # test_tablib needs MarkupPy, which isn't packaged yet - pytestFlagsArray = [ "--ignore=tests/test_tablib.py" ]; + disabledTestPaths = [ + # test_tablib needs MarkupPy, which isn't packaged yet + "tests/test_tablib.py" + ]; - pythonImportsCheck = [ "tablib" ]; + pythonImportsCheck = [ + "tablib" + ]; meta = with lib; { description = "Format-agnostic tabular dataset library"; homepage = "https://tablib.readthedocs.io/"; changelog = "https://github.com/jazzband/tablib/raw/v${version}/HISTORY.md"; license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/tabula-py/default.nix b/pkgs/development/python-modules/tabula-py/default.nix index f03c54e72de36..c029d7922fba9 100644 --- a/pkgs/development/python-modules/tabula-py/default.nix +++ b/pkgs/development/python-modules/tabula-py/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "tabula-py"; - version = "2.5.1"; + version = "2.6.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,8 +21,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "chezou"; repo = pname; - rev = "v${version}"; - hash = "sha256-Dfi6LzrLDz9VVDmbeK1dEaWuQosD4tvAH13Q4Mp3smA="; + rev = "refs/tags/v${version}"; + hash = "sha256-L/N4TqVHIlwqVeBKlUq5Oz1VW/105Ov6Yicvnn/lxlI="; }; patches = [ @@ -65,6 +65,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module to extract table from PDF into pandas DataFrame"; homepage = "https://github.com/chezou/tabula-py"; + changelog = "https://github.com/chezou/tabula-py/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/teslajsonpy/default.nix b/pkgs/development/python-modules/teslajsonpy/default.nix index df2a77387a97b..c1ec12b33f274 100644 --- a/pkgs/development/python-modules/teslajsonpy/default.nix +++ b/pkgs/development/python-modules/teslajsonpy/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "teslajsonpy"; - version = "3.5.1"; + version = "3.6.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "zabuldon"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-rLpjzH5YI+pTW5SxPOqXXnjDxWv0SBzShOvuBXbvF4c="; + hash = "sha256-qxC1nhvisYMfWRTyrkNSpqCKofAmqui23cMRaup8llU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/towncrier/default.nix b/pkgs/development/python-modules/towncrier/default.nix index 7b7ab11079a30..7be96c79a0e9f 100644 --- a/pkgs/development/python-modules/towncrier/default.nix +++ b/pkgs/development/python-modules/towncrier/default.nix @@ -1,4 +1,7 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder , click , click-default-group , incremental @@ -13,11 +16,14 @@ buildPythonPackage rec { pname = "towncrier"; - version = "22.8.0"; + version = "22.12.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-fTg5sDOFm0X7Vd+Ct0z9cCQxkzwMyfKHpafqPgXQQss="; + hash = "sha256-nEnX519kaprqAq6QTAvBY5yP0UoBKS0rEjuNMHVkA00="; }; propagatedBuildInputs = [ @@ -29,9 +35,6 @@ buildPythonPackage rec { setuptools ]; - # zope.interface collision - doCheck = !isPy27; - preCheck = '' export PATH=$out/bin:$PATH ''; @@ -43,12 +46,15 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "towncrier" ]; + pythonImportsCheck = [ + "towncrier" + ]; meta = with lib; { description = "Utility to produce useful, summarised news files"; homepage = "https://github.com/twisted/towncrier/"; + changelog = "https://github.com/twisted/towncrier/blob/${version}/NEWS.rst"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/traitsui/default.nix b/pkgs/development/python-modules/traitsui/default.nix index cf5e8bf8302a4..58808d81ce9a6 100644 --- a/pkgs/development/python-modules/traitsui/default.nix +++ b/pkgs/development/python-modules/traitsui/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "traitsui"; - version = "7.4.1"; + version = "7.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-TFs9Oq6qvR7IGgqMQPnM0o+oy51k7RORfJkNF0ZU+h0="; + hash = "sha256-IEcb8znD7ed/BrL6l76Qrj0Wbr78zBZ7y9oifHWxZj8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/troposphere/default.nix b/pkgs/development/python-modules/troposphere/default.nix index 93e09901e7d61..a22028fcbfd60 100644 --- a/pkgs/development/python-modules/troposphere/default.nix +++ b/pkgs/development/python-modules/troposphere/default.nix @@ -12,7 +12,8 @@ buildPythonPackage rec { pname = "troposphere"; - version = "4.1.0"; + version = "4.2.0"; + format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +21,7 @@ buildPythonPackage rec { owner = "cloudtools"; repo = pname; rev = version; - hash = "sha256-cAn4Hty5f/RsCnUA59CxtGrhRgzVyaHe5PuQOM6lwEQ="; + hash = "sha256-4flnV4WxK21NNd9FXizkw6FoGffSL27Tq/Jc87vYJbc="; }; propagatedBuildInputs = [ @@ -48,5 +49,6 @@ buildPythonPackage rec { maintainers = with maintainers; [ jlesquembre ]; license = licenses.bsd2; homepage = "https://github.com/cloudtools/troposphere"; + changelog = "https://github.com/cloudtools/troposphere/blob/${version}/CHANGELOG.rst"; }; } diff --git a/pkgs/development/python-modules/twine/default.nix b/pkgs/development/python-modules/twine/default.nix index c3e4682d5a7ec..5e51082ed6acd 100644 --- a/pkgs/development/python-modules/twine/default.nix +++ b/pkgs/development/python-modules/twine/default.nix @@ -16,13 +16,13 @@ buildPythonPackage rec { pname = "twine"; - version = "4.0.1"; + version = "4.0.2"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-lrHPEveuYRpKQLaujpVwIV2v8GEYKPX+HzehYlWrJKA="; + sha256 = "sha256-nhAu9f3VogZh64j61GM4gGw70yzx23KWA/42l7G8g8g="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index 730a0a591540a..2703f8bccee6c 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.28.11.5"; + version = "2.28.11.7"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-p983zG+2GHqECX2pUfjiHTNUSKolAaawo5y9HXyp7io="; + sha256 = "sha256-CuOGM3NJkNAZuA9UY9+hZOvTWBmYrIQ19Sbab+TVmMM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/uproot/default.nix b/pkgs/development/python-modules/uproot/default.nix index 03ac20ad60381..4705999a79896 100644 --- a/pkgs/development/python-modules/uproot/default.nix +++ b/pkgs/development/python-modules/uproot/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "uproot"; - version = "5.0.0"; + version = "5.0.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "scikit-hep"; repo = "uproot5"; rev = "refs/tags/v${version}"; - hash = "sha256-3i6AUQKKWu5KOtfLdLK2LpgkHyiqG30Eiyy6OH4fjUY="; + hash = "sha256-cklLbTO/EooQpq8vavKgloncSlyIX7DW+T9Cauyn6ng="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/urlextract/default.nix b/pkgs/development/python-modules/urlextract/default.nix index 855af054a3846..2d3917e06d710 100644 --- a/pkgs/development/python-modules/urlextract/default.nix +++ b/pkgs/development/python-modules/urlextract/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "urlextract"; - version = "1.7.1"; + version = "1.8.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-DYg7Wd5Th4c+o4JeYrNDWDMTE1rGZMP1wNVfF7Kzv30="; + hash = "sha256-NXP2uBKBTv4GykbpHoLZhO2qPNB9qqqilqRnrZiBoDc="; }; propagatedBuildInputs = [ @@ -50,6 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "Collects and extracts URLs from given text"; homepage = "https://github.com/lipoja/URLExtract"; + changelog = "https://github.com/lipoja/URLExtract/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ ilkecan ]; }; diff --git a/pkgs/development/python-modules/uvicorn/default.nix b/pkgs/development/python-modules/uvicorn/default.nix index 26d23f08afa40..e48536e66359d 100644 --- a/pkgs/development/python-modules/uvicorn/default.nix +++ b/pkgs/development/python-modules/uvicorn/default.nix @@ -11,19 +11,22 @@ , uvloop , watchfiles , websockets +, hatchling , pythonOlder }: buildPythonPackage rec { pname = "uvicorn"; - version = "0.18.2"; - disabled = pythonOlder "3.6"; + version = "0.20.0"; + disabled = pythonOlder "3.7"; + + format = "pyproject"; src = fetchFromGitHub { owner = "encode"; repo = pname; rev = version; - hash = "sha256-nxtDqYh2OmDtoV10CEBGYQrQBf+Xtuf5k9yR6UfCgYc="; + hash = "sha256-yca6JI3/aqdZF7SxFeYr84GOeQnLBmbm1dIXjngX9Ng="; }; outputs = [ @@ -31,6 +34,8 @@ buildPythonPackage rec { "testsout" ]; + nativeBuildInputs = [ hatchling ]; + propagatedBuildInputs = [ click h11 diff --git a/pkgs/development/python-modules/uvicorn/tests.nix b/pkgs/development/python-modules/uvicorn/tests.nix index b9cd883f43c03..116a9f1d28d0e 100644 --- a/pkgs/development/python-modules/uvicorn/tests.nix +++ b/pkgs/development/python-modules/uvicorn/tests.nix @@ -16,6 +16,8 @@ buildPythonPackage rec { pname = "uvicorn-tests"; inherit (uvicorn) version; + format = "other"; + src = uvicorn.testsout; dontBuild = true; @@ -44,6 +46,8 @@ buildPythonPackage rec { disabledTests = [ "test_supported_upgrade_request" "test_invalid_upgrade" + "test_no_server_headers" + "test_multiple_server_header" ]; } diff --git a/pkgs/development/python-modules/versioneer/default.nix b/pkgs/development/python-modules/versioneer/default.nix index 131bf9d7f4253..5976a307bf0a4 100644 --- a/pkgs/development/python-modules/versioneer/default.nix +++ b/pkgs/development/python-modules/versioneer/default.nix @@ -1,23 +1,32 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , pythonOlder +, setuptools +, tomli }: buildPythonPackage rec { pname = "versioneer"; - version = "0.26"; - format = "setuptools"; + version = "0.28"; + format = "pyproject"; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-hPxymqKW0dJmRaj2LxeAGYhf9vmhBzsppKIoJwrFJXs="; + src = fetchFromGitHub { + owner = "python-versioneer"; + repo = "python-versioneer"; + rev = "refs/tags/${version}"; + hash = "sha256-Jy0c1I3kLgJAeGWzcgl5qVAWesf4EXaMIOW03B+1yWE="; }; - # Couldn't get tests to work because, for instance, they used virtualenv and - # pip. + nativeBuildInputs = [ + setuptools + ] ++ lib.optionals (pythonOlder "3.11") [ + tomli + ]; + + # Couldn't get tests to work because, for instance, they used virtualenv and pip doCheck = false; pythonImportsCheck = [ @@ -27,6 +36,7 @@ buildPythonPackage rec { meta = with lib; { description = "Version-string management for VCS-controlled trees"; homepage = "https://github.com/warner/python-versioneer"; + changelog = "https://github.com/python-versioneer/python-versioneer/blob/${version}/NEWS.md"; license = licenses.publicDomain; maintainers = with maintainers; [ jluttine ]; }; diff --git a/pkgs/development/python-modules/volkszaehler/default.nix b/pkgs/development/python-modules/volkszaehler/default.nix index cbc51d024a6ed..dcb153ba98ca7 100644 --- a/pkgs/development/python-modules/volkszaehler/default.nix +++ b/pkgs/development/python-modules/volkszaehler/default.nix @@ -8,16 +8,16 @@ buildPythonPackage rec { pname = "volkszaehler"; - version = "0.3.2"; + version = "0.4.0"; format = "setuptools"; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "home-assistant-ecosystem"; repo = "python-volkszaehler"; - rev = version; - sha256 = "sha256-EiruMlhXvbUhCaDtHc3qCLbpp/KHp9rVpk2FmbR4A/k="; + rev = "refs/tags/${version}"; + hash = "sha256-jX0nwBsBYU383LG8f08FVI7Lo9gnyPSQ0fiEF8dQc/M="; }; propagatedBuildInputs = [ @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module for interacting with the Volkszahler API"; homepage = "https://github.com/home-assistant-ecosystem/python-volkszaehler"; + changelog = "https://github.com/home-assistant-ecosystem/python-volkszaehler/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/w3lib/default.nix b/pkgs/development/python-modules/w3lib/default.nix index 9c98f4d0926cf..ea878ac4890e8 100644 --- a/pkgs/development/python-modules/w3lib/default.nix +++ b/pkgs/development/python-modules/w3lib/default.nix @@ -1,31 +1,38 @@ { lib , buildPythonPackage , fetchPypi -, six , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "w3lib"; - version = "2.0.1"; + version = "2.1.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-E98V+MF7Fj3g/V+qiSwa0UPhkN/L25hTS7l16zfGx9Y="; + hash = "sha256-DhGY8bdFGVtrPdGkzWYBH7+C8wpNnauu4fnlyG8CAnQ="; }; - propagatedBuildInputs = [ six ]; + checkInputs = [ + pytestCheckHook + ]; - checkInputs = [ pytestCheckHook ]; - pythonImportsCheck = [ "w3lib" ]; + pythonImportsCheck = [ + "w3lib" + ]; disabledTests = [ "test_add_or_replace_parameter" ]; meta = with lib; { - description = "A library of web-related functions"; + description = "Library of web-related functions"; homepage = "https://github.com/scrapy/w3lib"; + changelog = "https://github.com/scrapy/w3lib/blob/v${version}/NEWS"; license = licenses.bsd3; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/weasyprint/default.nix b/pkgs/development/python-modules/weasyprint/default.nix index 5ec5c5997706b..71ae956d6df82 100644 --- a/pkgs/development/python-modules/weasyprint/default.nix +++ b/pkgs/development/python-modules/weasyprint/default.nix @@ -79,6 +79,11 @@ buildPythonPackage rec { FONTCONFIG_FILE = "${fontconfig.out}/etc/fonts/fonts.conf"; + # Fontconfig error: Cannot load default config file: No such file: (null) + makeWrapperArgs = [ + "--set FONTCONFIG_FILE ${FONTCONFIG_FILE}" + ]; + postPatch = '' substituteInPlace pyproject.toml \ --replace "--isort --flake8 --cov --no-cov-on-fail" "" diff --git a/pkgs/development/python-modules/webauthn/default.nix b/pkgs/development/python-modules/webauthn/default.nix index 8b551f1c66a0e..e9de15488ddc4 100644 --- a/pkgs/development/python-modules/webauthn/default.nix +++ b/pkgs/development/python-modules/webauthn/default.nix @@ -12,13 +12,15 @@ buildPythonPackage rec { pname = "webauthn"; version = "1.6.0"; - disabled = pythonOlder "3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "duo-labs"; repo = "py_webauthn"; rev = "refs/tags/v${version}"; - sha256 = "sha256-Ts0zKnQg1EaBNB9xQmzOpEVwDSFwHNjIhEP1jTwEOFI="; + hash = "sha256-Ts0zKnQg1EaBNB9xQmzOpEVwDSFwHNjIhEP1jTwEOFI="; }; propagatedBuildInputs = [ @@ -32,11 +34,19 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "webauthn" ]; + pythonImportsCheck = [ + "webauthn" + ]; + + disabledTests = [ + # TypeError: X509StoreContextError.__init__() missing 1 required... + "test_throws_on_bad_root_cert" + ]; meta = with lib; { - homepage = "https://github.com/duo-labs/py_webauthn"; description = "Implementation of the WebAuthn API"; + homepage = "https://github.com/duo-labs/py_webauthn"; + changelog = "https://github.com/duo-labs/py_webauthn/blob/v${version}/CHANGELOG.md"; license = licenses.bsd3; maintainers = with maintainers; [ SuperSandro2000 ]; }; diff --git a/pkgs/development/python-modules/websockets/default.nix b/pkgs/development/python-modules/websockets/default.nix index ba8ee074664f9..7ccafafad54e3 100644 --- a/pkgs/development/python-modules/websockets/default.nix +++ b/pkgs/development/python-modules/websockets/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "websockets"; - version = "10.3"; + version = "10.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,12 +17,9 @@ buildPythonPackage rec { owner = "aaugustin"; repo = pname; rev = version; - hash = "sha256-ZUn/DvO1Kx7Uxne4DF/am69YL1c48qpgQrGek355Z+4="; + hash = "sha256-IylvnaS8cHatA+WMc5uY9E+l+52INqOMITU1VJPO2xY="; }; - # Tests fail on Darwin with `OSError: AF_UNIX path too long` - doCheck = !stdenv.isDarwin; - patchPhase = '' # Disable all tests that need to terminate within a predetermined amount of # time. This is nondeterministic. @@ -44,7 +41,12 @@ buildPythonPackage rec { done ''; - checkInputs = [ unittestCheckHook ]; + checkInputs = [ + unittestCheckHook + ]; + + # Tests fail on Darwin with `OSError: AF_UNIX path too long` + doCheck = !stdenv.isDarwin; pythonImportsCheck = [ "websockets" @@ -53,6 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "WebSocket implementation in Python"; homepage = "https://websockets.readthedocs.io/"; + changelog = "https://github.com/aaugustin/websockets/blob/${version}/docs/project/changelog.rst"; license = licenses.bsd3; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/wn/default.nix b/pkgs/development/python-modules/wn/default.nix new file mode 100644 index 0000000000000..21f0ec0d08c8f --- /dev/null +++ b/pkgs/development/python-modules/wn/default.nix @@ -0,0 +1,41 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytestCheckHook +, flit-core +, requests +, tomli +}: + +buildPythonPackage rec { + pname = "wn"; + version = "0.9.2"; + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-TghCKPKLxRTpvojmZi8tPGmU/D2W+weZl64PArAwDCE="; + }; + + nativeBuildInputs = [ flit-core ]; + + propagatedBuildInputs = [ + requests + tomli + ]; + + checkInputs = [ pytestCheckHook ]; + + preCheck = '' + export HOME=$(mktemp -d) + ''; + + pythonImportsCheck = [ "wn" ]; + + meta = with lib; { + description = "A modern, interlingual wordnet interface for Python"; + homepage = "https://github.com/goodmami/wn"; + license = licenses.mit; + maintainers = with maintainers; [ zendo ]; + }; +} diff --git a/pkgs/development/python-modules/xattr/default.nix b/pkgs/development/python-modules/xattr/default.nix index ee31542d08b9a..fa9620d9dab30 100644 --- a/pkgs/development/python-modules/xattr/default.nix +++ b/pkgs/development/python-modules/xattr/default.nix @@ -3,18 +3,24 @@ , fetchPypi , python , cffi +, pythonOlder }: buildPythonPackage rec { pname = "xattr"; - version = "0.10.0"; + version = "0.10.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ciZS0qUyTheJHEFtTHbZHM+YgwqPUWoN6FM86GfzrK8="; + hash = "sha256-wS59gf+qBgWzrIwiwplKjhipzxxZKHobdyKiKJyVLsU="; }; - propagatedBuildInputs = [ cffi ]; + propagatedBuildInputs = [ + cffi + ]; # https://github.com/xattr/xattr/issues/43 doCheck = false; @@ -23,10 +29,15 @@ buildPythonPackage rec { ${python.interpreter} -m compileall -f xattr ''; + pythonImportsCheck = [ + "xattr" + ]; + meta = with lib; { - homepage = "https://github.com/xattr/xattr"; description = "Python wrapper for extended filesystem attributes"; + homepage = "https://github.com/xattr/xattr"; + changelog = "https://github.com/xattr/xattr/blob/v${version}/CHANGES.txt"; license = licenses.mit; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/xdis/default.nix b/pkgs/development/python-modules/xdis/default.nix index 5039dc242f03b..407375cbcd71c 100644 --- a/pkgs/development/python-modules/xdis/default.nix +++ b/pkgs/development/python-modules/xdis/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "xdis"; - version = "6.0.4"; + version = "6.0.5"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,8 +18,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "rocky"; repo = "python-xdis"; - rev = version; - hash = "sha256-CRZG898xCwukq+9YVkyXMP8HcuJ9GtvDhy96kxvRFks="; + rev = "refs/tags/${version}"; + hash = "sha256-3mL0EuPHF/dithovrYvMjweYGwGhrN75N9MRfLjNC34="; }; postPatch = '' diff --git a/pkgs/development/python-modules/xsdata/default.nix b/pkgs/development/python-modules/xsdata/default.nix index ab88818273944..2783578180544 100644 --- a/pkgs/development/python-modules/xsdata/default.nix +++ b/pkgs/development/python-modules/xsdata/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "xsdata"; - version = "22.11"; + version = "22.12"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-3A2vyK6UdelWSzcN7pzPz6xKnU3X+rum7dKzl6OfWoc="; + hash = "sha256-o9Xxt7b/+MkW94Jcg26ihaTn0/OpTcu+0OY7oV3JRGY="; }; postPatch = '' diff --git a/pkgs/development/python-modules/yalexs-ble/default.nix b/pkgs/development/python-modules/yalexs-ble/default.nix index a84ba321ab21b..11f2a9573bbf2 100644 --- a/pkgs/development/python-modules/yalexs-ble/default.nix +++ b/pkgs/development/python-modules/yalexs-ble/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "yalexs-ble"; - version = "1.12.2"; + version = "1.12.5"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-QVZlf7t925RFVNBxOj39Ln7sezTkwQ065sbVFcoQG4Y="; + hash = "sha256-wofdqwgMbwxUgUVwBT44qbD4m0q0CtmGH7AxRNMBMbE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ytmusicapi/default.nix b/pkgs/development/python-modules/ytmusicapi/default.nix index fd5baba48adc1..53a6b1846d930 100644 --- a/pkgs/development/python-modules/ytmusicapi/default.nix +++ b/pkgs/development/python-modules/ytmusicapi/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "ytmusicapi"; - version = "0.24.0"; + version = "0.24.1"; format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-vbSWgBze3tFLEpHdh3JXij3m5R6iAhTSjrCMaSLZalY="; + hash = "sha256-8NYutkZwR8tQzsVzYsOo6HdkiZ6WbIconDjcOwgs3PM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zamg/default.nix b/pkgs/development/python-modules/zamg/default.nix index 66532c75b7d8b..791dfd87798a9 100644 --- a/pkgs/development/python-modules/zamg/default.nix +++ b/pkgs/development/python-modules/zamg/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "zamg"; - version = "0.2.1"; + version = "0.2.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "killer0071234"; repo = "python-zamg"; rev = "refs/tags/v${version}"; - hash = "sha256-P9BvrINsF6OZdNw8L8RXjpDgVWvW5s3qgCFXtEeUChM="; + hash = "sha256-pBXt7t7Cs7F0bxvB8N67XaY/uvYhZPw10+bei/3QSfw="; }; postPatch = '' diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index 247a3fb2dfb88..7d47727ed413e 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,14 +4,14 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.15"; }; +let derive2 = derive { biocVersion = "3.16"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.7"; sha256="1ckrdqlbk0vmpw1b7y4zlrx8gslhxh62q343k2a3b45r8lg78lp0"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.4.0"; sha256="15wlnzwa1zqxlzqk90fid7g2631q91n3y117wsk2h1prmgb64j7l"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.4.0"; sha256="1nx9qx0kqqkblgcl03p5zdjlzkwpwgzrw9zaywz2nb2318219n3d"; depends=[AnnotationHub]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.8"; sha256="1bn39n8lwb6w533fl4vlszivb4b3x9adkjh04z98sbn333bicgki"; depends=[AnnotationHubData ensembldb]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.5.0"; sha256="0dhh6a05a4m76h7gdg7yyya9aylls8ii8n14zkgyx9mhh9drhqq7"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.5.0"; sha256="1g3b9skkdnqbvrrz0jcclhy99abaaiwwasr7j4r4kvla5n9kbyrg"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.4.0"; sha256="1rmy4gdb5rgh7pr2fdxn55cnhdwsb1b7c9ph97ax82a30japvsa1"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.5.0"; sha256="071z6m2301njdwiq0x0dw61k7ckyimj81jacy25y9chclys8j5cq"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; @@ -125,7 +125,7 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; - CTCF = derive2 { name="CTCF"; version="0.99.5"; sha256="0rrks0zmknfj04gzvbj6206n4v78cjwxrwr4216xwsp6bsbqaj65"; depends=[]; }; + CTCF = derive2 { name="CTCF"; version="0.99.10"; sha256="0s6rscf6c4sjf6azf3blzb3lfgk7sk3clrlvmhq2gv82g9ic6d40"; depends=[]; }; ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; @@ -147,10 +147,11 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.15.0"; sha256="169d2fycsw1k6m2cx08i877nbcv1mwm1ll2apjjny83zqmrivjds"; depends=[AnnotationDbi]; }; - GeneSummary = derive2 { name="GeneSummary"; version="0.99.3"; sha256="0za1cy8kz8all8g5wk3475lvzwp25wq7b7p0568didfif88w5pj2"; depends=[]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.8"; sha256="1d4yfah3fllmqbv76ygxfga4rbj03g558wbwnk61w70118rm0rsp"; depends=[]; }; + GO_db = derive2 { name="GO.db"; version="3.16.0"; sha256="13iv94wl2adqrwvcmicrxiz3jmji6v4znvhkkgmsx053icnq2lj6"; depends=[AnnotationDbi]; }; + GeneSummary = derive2 { name="GeneSummary"; version="0.99.4"; sha256="0fliy0z1byh7zlf7k3lklarrd2l2rl3sgliqsxnn4sviskv2rlxz"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.9"; sha256="1yj5vhd05d2alh9cgvq5jz9sl754g8zfhpf9kyiyvvyfisd72fp6"; depends=[]; }; GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; + HDO_db = derive2 { name="HDO.db"; version="0.99.1"; sha256="14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"; depends=[AnnotationDbi]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -199,9 +200,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.15.0"; sha256="15lshbv5rlhh0cm9a235s0hxiy6svqp0pwk1gs4h6wlsr49560kv"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.16.0"; sha256="0m696d1pwnaiymv4c9wmhl05jgwa64n98xvv4czyg1wjxxdly9z7"; depends=[AnnotationDbi]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.15.0"; sha256="03vjfb9vx1gxrw1jkq6y4i46qhjj9z2mkdiflglbd6kpfrgnl0z7"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.16.0"; sha256="035k1vappczks14jms7azl9bvgg1z67svbng8b7v4qmr9slsm0l0"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -214,16 +215,12 @@ in with self; { SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; }; SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; - SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.9"; sha256="1qxsaq2wai1rqbidz005frjw8r8m2ia9cd87ziw8i66a798rzima"; depends=[GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.13"; sha256="123n3rwkq8c8gqwhbwpsvis2x1xp137hchg9y7sv7l1givb6n2kf"; depends=[BSgenome GenomicRanges IRanges]; }; - SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="1hfqbf03jd2r7ybb19rl3czrjb4h4vjqlrrilfqc8yymy7myvqqb"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.6"; sha256="17ql8fsali09dx1vv9178ya7zx901vwq4bnjrs35fjrjdvx6yvfd"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; }; SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.20"; sha256="1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.21"; sha256="0id595ily1kwzsc3sh3mhbjyki19vc7n4vzdwq9pdpasraykc718"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.22"; sha256="0icb85y6jc6a2rphf8dsxhfcsh7j6kmm6iii7f0dl33dsgsmb1wl"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.22"; sha256="1zdx6bjl494wlzqhhz6q6cnygbrvqimcrmmxab5dfwckkyfxlyd8"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -247,7 +244,7 @@ in with self; { TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.15.0"; sha256="1y9fqhkk5wgny43bxc0j82afy49vz34rblcmcfmwavngdkpnj879"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.16.0"; sha256="1kphpnfibyfh5qqki8ivngynsr81jfqw04ysya6xq2llldh8i137"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.15.0"; sha256="03ca3spvhci16fndy82fx0cik0a6yqj77l6nfvv5k9qg3xnrp179"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -270,7 +267,7 @@ in with self; { TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.12.0"; sha256="01bl7zdxyhhg4706jhi7271fs09riixkyr3x0bancl1fpzwszc6p"; depends=[AnnotationDbi GenomicFeatures]; }; UCSCRepeatMasker = derive2 { name="UCSCRepeatMasker"; version="3.15.2"; sha256="0hi1h8vvbf27wk13gbfgm0amjqgl7b2qxlgakcbr87qxwbi02zv7"; depends=[AnnotationHub GenomeInfoDb RCurl XML]; }; - XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + UniProtKeywords = derive2 { name="UniProtKeywords"; version="0.99.4"; sha256="0rs3y7kw77nwbvil4kvmjjlvjdsdyd8rdc0qb1ghm3bvisycgnyh"; depends=[]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; adme16cod_db = derive2 { name="adme16cod.db"; version="3.4.0"; sha256="1vn9s1lrl6zzs00madb111fdzqjfb45mprpjqap8bvib65942rvq"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -279,22 +276,22 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.15.0"; sha256="01hs1qxzpp9974yhplkhd4hq0mxx63plgb9p5azqz5z05x88ksfn"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.15.1"; sha256="1sazbvgc7rjfcn9y0qkvq0s21vb8i5iy14w9wi274s2h75ishg2i"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.16.0"; sha256="0mmhbm5hzz739jv0028wna03zk6lphiwac5qhg55w8y19kclkvc2"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.16.0"; sha256="1gir9xvfx7zccj3y3k6g9bli330pmlwc6gn8ajf513a2w4gl0z4q"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.15.0"; sha256="1vvlsdbnbdg1pifzzrzsgz9lp251p3bq80mgc5jmmkw2mf1pk3n0"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.16.0"; sha256="02abx3ygnh1pnks8rbf2k86a1kzkbv7vfykkln22anvf2a41qd0d"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.15.0"; sha256="0ycxp1z0idjdhzi5zr5s3cj6h421mfgjdvrcx64h4sfg6qga8yv2"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.16.0"; sha256="0cn1czv87dmmc706n7l8995pv1xa57f8agx5xdfdba3d50snwh7p"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -304,10 +301,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.15.0"; sha256="09jpzqj46w0m4gz9i3wghvhd0agksimmyp6c53d9sszi45sxhqyc"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.16.0"; sha256="1r3svjlr536q3zicq7k0wvw6szpdj81h3bjb3f4a0f3rlxzrakif"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.15.0"; sha256="0k2wip710k6z4s20f86ff3lbhjh5jg9waaqcznhhrn4nca9gymzr"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.16.0"; sha256="04lzica0hgq7xrdspzidfnjgjg9cxhy2wjcz4vndlx519jlwdrny"; depends=[AnnotationDbi]; }; chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; @@ -331,15 +328,15 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.15.0"; sha256="00r9w2wklmvswrvvvmx0bwgwlb5q2fj7wr0nz2p5rnv4nczj8f8w"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.15.0"; sha256="0xall7j0y7gq4iv02q4q3b4mj7111zxjb1gycib1z3fy6nfx5bl1"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.16.0"; sha256="17khj10g2nsim40w9c6wc79hx5xx4g2n0hnvigsxm3l0a38vsz12"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.16.0"; sha256="09n18nv2v4c7j472ygzpv808p473gfnifh9vnzm79ifjiixvzx4w"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; - excluderanges = derive2 { name="excluderanges"; version="0.99.6"; sha256="1ryp2ghbx1b1268fpgza5rn6brhalff9hsr6fxpr5x5mc35hkd68"; depends=[]; }; + excluderanges = derive2 { name="excluderanges"; version="0.99.8"; sha256="19pdwlhqlz420yss371bsqhkx8c7wxr0sv4wsycnc0mlplwq4bsf"; depends=[GenomicRanges]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.15.0"; sha256="0x4hsqlzsjjdhjfqa57xwsvn5cnn7radhqb21vjq7vcpvp2hfjmp"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.16.0"; sha256="1mjd1g0pazhzgwiwll71fhqcisilc5wqz7dnl8ypxd7v7915w8jr"; depends=[AnnotationDbi]; }; geneplast_data = derive2 { name="geneplast.data"; version="0.99.6"; sha256="1vq2l828d25lsmmac6079vip8bbvqhiyr1x58s467cwcl1mgayrk"; depends=[]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; @@ -472,7 +469,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.15.0"; sha256="15y7ggkapizkj9fx0w0d388vqd4v2j24crygx7c783g01hi0lrn1"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.16.0"; sha256="1gjikb5rp6qh5cv90hylhjkna4kp084mxawqv0x1z5kl8lx8dfgk"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -510,7 +507,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.15.0"; sha256="07fd1pfkzkjrf6zk061hngf2hba9yikczc5kdwks22sh8sz407yd"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.16.0"; sha256="0mgwrhlcac6vxvb9b8m9xx1v2yav04sdgw649vkaq7a8kbzwywas"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -565,7 +562,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.15.0"; sha256="1b85xci8xcmck41yqm1sd63cvxmkrnm5cpfdnr9dmw77vl1p85wb"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.16.0"; sha256="0nr2s573najg1n8jl73040cglqmgb169rv9mhk8zmcc4zqgfaa0k"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -602,26 +599,26 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - ontoProcData = derive2 { name="ontoProcData"; version="0.99.9"; sha256="1axqhximb238h7ib7sd7g1n1in8969d263pjd362i0s1m4y5y033"; depends=[]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.15.0"; sha256="1qnqp1m7asa16llxlrjmj6ng93v7ngcg03l51k33cnwjhzalgl88"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.15.1"; sha256="1n954fc14rfdsaldw93dnw11jrs0ar0bk5icc86mdiy0c18bvx4z"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.15.0"; sha256="0nmrhbnpkjgmb5adh38lffrv1h84grfy6lbgd98y6b1iq58facnl"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.15.0"; sha256="0hc3gd782yynn12wkawwri07src6ay3zwpj0yjbxcgkkrdga8jdj"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.15.0"; sha256="1dmvszbri4kipjydjaz78igi16xqjlzxvns4f2d1rfdlfvwpgvyf"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.15.0"; sha256="1d9igsxxl7nws3ah6k4vz9hfzpdb0vb8hg6h911yr4z0hpc00hbk"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.15.0"; sha256="0nmgwqq8s4vswa9cc5r3qglgbc13wggs2isnj9n1rnb738i3n54n"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.15.0"; sha256="0x0j7fc8pyz23jn6ag3cvz55zrk3gmvnkqhfwvsvdz7v72cgwhxy"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.15.0"; sha256="10ma0823mr2aj9xrr0ygg8sjdndksslkjpzlxb259lwy421hskcn"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.15.0"; sha256="1gi8dj5hn8798fgwhqskn131p108n78lvk2wnl69sb6cwyw4dg5g"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.15.0"; sha256="0prwma5jfxszwc4avna51x4cmnqchz2s317cp4ia5w7035hbpj8x"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.15.0"; sha256="12npjcq5n04ja82yxpp35lmjgxrzd3rp5xxmrggzw0zb1w4dyn66"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.15.0"; sha256="1ly8bfjq4n3agb7f27cizf87qy0y4001nimnw9a3nar1hi43df7n"; depends=[AnnotationDbi]; }; + ontoProcData = derive2 { name="ontoProcData"; version="0.99.9901"; sha256="16wwh539hdm89f1vxqfgjmlbqwadnr4xqap80annsqgfn90mi8rk"; depends=[]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.16.0"; sha256="07p8v4ls2s2svd0r276nn4w125iimcq78395r9pmx9x0vw2a6xvj"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.16.0"; sha256="15xgqgnd4qmnhx9fd95g40zr07iiw97jkjhmp1whdc5cvd2bhjwm"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.16.0"; sha256="12smyjq1bl1s4j06r3klqbm491in4ndjqnk7j6vydyjrz9jwkdcs"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.16.0"; sha256="0sa4g769wddw4gk3p8103x48hggn6hab28pnsm7idginz5gygc70"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.16.0"; sha256="0w75s2zqvq1rxgvbcnif01fmyj5ajvx9m7jfdb86al8jm3pcd61x"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.16.0"; sha256="1ss1sd9g0lzqa7il4wkchlwqxyrc0wirkdxzd18fmqij7wvwa0pb"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.16.0"; sha256="1vxnf0b5v0lc963vqrzhccya895fhbzzarfwm54gwd7zj9r7chy0"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.16.0"; sha256="1n9l2y213187fnbxsyyq51rkl9ck895gymbnacg5krj668h08g6j"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.16.0"; sha256="0rmis6gx2gwkjli9xp3vwrppp22kdlpxpywx38r0cfkxsaaaq9pi"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.16.0"; sha256="1rdyxwfxiamr1x4zxngjc57a5zpdycjnq5b9xxx9wih8md8ij5aq"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.16.0"; sha256="02ic79qb6b3vp50g44736gkmlx1hsjhfadj7dp463fqdzbg6ybid"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.16.0"; sha256="030wpxzp4lf3fs6wxp1vwrlclxjsq8i507wwvnbhkl9lcys5f0x0"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.16.0"; sha256="0sm147m9xp4xdzga2kk8d5zdfgb3qzxz57hhb093ph1a4hyczl64"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.15.0"; sha256="1dca0qxji9nfrmr8p01w9fm2fqghkmjhwfjky8y6k49k28mr3pi6"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.15.0"; sha256="0yx4vqax25p0cy6li2pxbmgsslxk2nbqx381vsikpiyqlzkb77p0"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.15.0"; sha256="0rhrb52qafvxjxg3b65w67x9lhcmxc1pz4svp1q549f6s75mhvmp"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.15.0"; sha256="0fv7y4ldyg2l1zr2csbaf8f34xz2wlr8rj86bgyn1ygra503irwm"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.15.0"; sha256="0kzr4mnb2mld46d81ckygqg8s9r0nxcdckixn748yw0hwvf33krg"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.16.0"; sha256="1jwma50lw8c0axr2hs1ij5wn26sl129gk7rcrrk2h1lh21zx48n0"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.16.0"; sha256="1wvnd2f9nv0bgqan63b0v40mv1y8j1jcf30hxlfx72r0isdpf4fh"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.16.0"; sha256="03b8m4p865kzhjj8zyhmc0ic0n4jyjdl4h8a8xny10b7xs6l0v9f"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.16.0"; sha256="1v793yxdszxg7hsj0f60qjxlflmpqjywcwmxrvizjzb9d76y6zrk"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.16.0"; sha256="0j2xv59d65gin2v6d2gfsly6wyj9bmjpnld75qzlc7sqapa51li6"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -798,8 +795,10 @@ in with self; { phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.13.0"; sha256="0jq5z1af0f5jqazz46gvf3nnkrp91a6qzb96bk7fjdbvk5b3z0dd"; depends=[AnnotationHub GenomicScores]; }; + phastCons35way_UCSC_mm39 = derive2 { name="phastCons35way.UCSC.mm39"; version="3.16.0"; sha256="0lniqakqxja8inq3gn168w1xja1m2kbmww0cw971smsnddypmig7"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.15.0"; sha256="0rbfkbi7hmjmsb0w6qzvz70cg6g1j0zyl2bm3jckb2x80nzd0cyl"; depends=[AnnotationDbi]; }; + phyloP35way_UCSC_mm39 = derive2 { name="phyloP35way.UCSC.mm39"; version="3.16.0"; sha256="1n0iywfs23dhc54mapirvaqcbx38zjf8lknbsz80p5lxp24n2lf9"; depends=[AnnotationHub GenomicScores]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.16.0"; sha256="0aj1xafsx1dg4w6mmfaaj87izgjfs8akj4dm5x7qzcmvxcd6sx7c"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -829,7 +828,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.15.0"; sha256="1cj6s5x7zkw642qgbbngnpym5f71p3cvi79vx0y6pd565s6hfkj1"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.16.0"; sha256="18c7im1l50z7gzj5i9aj3h9pqvnrrazqimigp49nh6ssxlpy51rc"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -837,7 +836,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.81.0"; sha256="0rfrk0akjngha6zs6dnh4wa9jl0l9dknrmwhbag9gbc9h5pl7i4g"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.82.0"; sha256="0l6k7jy0gz8wsv69apw4nk6lbr0ppbfpyjppk81hqn22pzi17w42"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -851,7 +850,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.15.0"; sha256="0iqn7cad6rhlkbyhw8ldc85z9fzs28hybb80pc6j7p0a6k3va6ny"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.16.0"; sha256="0zz6aarirvd31x6cnya097ckjvww3g5wx135wg4041f33cqisq55"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -873,8 +872,8 @@ in with self; { soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; }; sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; - synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; }; - synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; + synaptome_data = derive2 { name="synaptome.data"; version="0.99.6"; sha256="00cqgx06wysz0qyicwnxlc8hpqkj5rwqlyfzsvy7agvcjjkarwg5"; depends=[AnnotationHub]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.12"; sha256="1f63s54kn78bxrhp1aidghaicymd39p3bgpnxkz9lkby50xcfwyl"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; @@ -891,8 +890,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.15.0"; sha256="0xv5b7mblx25rqm2g018jdch05c0djq83sa764ck4ps8nzk4yzws"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.15.0"; sha256="1crz6wyz7aczpy7xfl4yh1l34lv0ldvqb64qd0mnclsvx1222mm1"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.16.0"; sha256="06wn3nw6614awmf7z7r2kq02347bbmpq8ydzbpsrfniq14jly6m4"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.16.0"; sha256="146zg2x69m3hzyqbjzadilaqskzfxvjblw0c4pjgv6akf3vi3xn3"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -904,7 +903,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.15.0"; sha256="0k3fp0zxyybgy0dp4i4kckdrcbmx22fgfw11qj97m9vcy3l0rvvj"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.16.0"; sha256="0ibc6lzax4f3ym049s3cgg0fqhab7vlnk3xs2javvnx2vmizsi54"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -913,7 +912,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.15.0"; sha256="15ysjz7x935aadapwnlgg57rwiwgs49wlcaak348w6x4rbk7sldz"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.16.0"; sha256="186z99zsw023wq8l94l781lh7szrx72bxkg1f0ldq0lz5j3k99cn"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; @@ -1003,6 +1002,12 @@ in with self; { MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; broken = true; }; MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; broken = true; }; MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; broken = true; }; + SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.9"; sha256="1qxsaq2wai1rqbidz005frjw8r8m2ia9cd87ziw8i66a798rzima"; depends=[GenomicRanges IRanges S4Vectors]; broken = true; }; + SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.13"; sha256="123n3rwkq8c8gqwhbwpsvis2x1xp137hchg9y7sv7l1givb6n2kf"; depends=[BSgenome GenomicRanges IRanges]; broken = true; }; + SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="1hfqbf03jd2r7ybb19rl3czrjb4h4vjqlrrilfqc8yymy7myvqqb"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; + SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.6"; sha256="17ql8fsali09dx1vv9178ya7zx901vwq4bnjrs35fjrjdvx6yvfd"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; broken = true; }; + SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; + XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; broken = true; }; org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; broken = true; }; ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; broken = true; }; diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 71184527f2868..1888fb3ecfb8f 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,420 +4,429 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.15"; }; +let derive2 = derive { biocVersion = "3.16"; }; in with self; { - ALL = derive2 { name="ALL"; version="1.38.0"; sha256="0410045x327wmfkksshd8yishw4yxij08vn8p65cdj7hb3qy3p0z"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.36.0"; sha256="01dkfq412p6chbv0z9fqhizmjravrq7lgbl94zfhxx3rr2r94gvg"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.32.0"; sha256="1cjzr58426s9z2bwjz3wzlkh52fv0q85cw4gbjnhwakh9sr3dd5p"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.16.0"; sha256="0y2n8g7sxh3sygvslk9z4pcac55c2fa1cplrg3hi1m1w315wrkvv"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.32.0"; sha256="06dq8930jjhw4hqzqwh5vyqaacg1dm6v4v20ilz82ynsa616mhf7"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.30.0"; sha256="1hvjlv3qza7cggfc764blw51aa2vghqbkyr7vhc2zipwvx924ig3"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.34.0"; sha256="1mzfzaphd42h6rcwawj521643blwp1qdimmx1k6nxjfzm4igwdvf"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.34.0"; sha256="1sfxmhlhg26ksrl12crvbfn8c3q9h5n93vg3rw5m3q7bxss4ag1j"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.34.0"; sha256="0hw0xrx12aa0a8l2mqshpd364acb98qani4m6mzgp419rl0bdw70"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.36.0"; sha256="1k3z11wg44xrpm14lcvhbcgndz79b6i8dqld3n4xg0m5ivc11qrl"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.24.0"; sha256="0cncb8km0sc2xh95rgnnm38kys5ml0n8gh8cl6x7ls1xh9sm83f7"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.26.0"; sha256="11rxr1wapfyif7wn6x0zjc6c470fmkhbpcjssfrmkisxrlq84xdf"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.14.0"; sha256="1pgwrcixr0si0977svyavls79fw7dh5fh9i4ywnqb5rziadmjcmq"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.34.0"; sha256="0ckgm24nxq1sk54acqj49f7wi54zaipav85yzgjr72slp5rkzvmp"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.4.0"; sha256="17r22xnw8kq6v2nlgjibqpl927wz0y1pxqb42grqmz8dvhhxig76"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.4.0"; sha256="0khlz0vzymschk3bz1i2v4qj08b12qb9p3gbz86fxrcydd10084j"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.16.0"; sha256="1nj30nw545wlr710phay3jd3gd3pssx5pisyap8mall9953zzr4p"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.34.0"; sha256="00hdpa4s8n3kx6nqsmja9x7qwwwx6awjv1spa2gfkyrrj3lgzdfg"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.36.0"; sha256="1g3m90j86518wq4g4bd535pi3i8wylffcwvq1p0kr1jm7hfwshmn"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.16.0"; sha256="1nchppd564cj61lzbjl89m8jdx336f1iszq5giybjhnywvqdz0p1"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.32.0"; sha256="0r29krcwsfvyp3acx6slfv1909xh04izjdbbxhn032h02ahk2wxr"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.24.0"; sha256="1cd86s4n9k3fmzaxw7cda3x0hxxr4yk15v9wadn6gncqia5qflix"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.32.0"; sha256="1kvza4sf3wlylq7x6v5rv8bz46q2bm9dd49xy3a3yw7kjfby1h9x"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.32.0"; sha256="14gwl2j6sgfwrvzlccfjnvrlwqzjrxh7fdphs89ij57nkc750bkk"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.16.0"; sha256="1nph7k01d0gvgh62rk5m0p8g6clii6rihlwxa8j57sakpf19a3ap"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.28.0"; sha256="0wcrsbbr5a8sh5hvagdl3jhfxy22p2dslfnzp21pxj65fj33ij2y"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.22.0"; sha256="0nyik0vjm8a3mj6589civly48504a1f2a9nxn2inbfw011plg7hf"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.28.0"; sha256="1fvr7drdfzw4jwp7lilspy2mv751828a5w53y0s1f1i347vplw0s"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.16.0"; sha256="16ac969qqhpca0qlff36g85rw1m25jk5qbs30i561yznn82bk2q0"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.34.0"; sha256="09v30pxs1nqq53294mzc0vajxxymv6168fixz3gsspb3aq3xnfy2"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.20.0"; sha256="153nbfwwhn888ribapy1xh2lii0mzs9f1hczph9f4iaykyk5i9di"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.34.0"; sha256="107glwdm8pjyzvb13x75qa826xbpl4x0c8k33ych54ji1gd3qmyg"; depends=[affy hexbin limma qvalue statmod]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.12.0"; sha256="1dkz0xl9nn620mbin88yxk2vs312vpayp95i0ci5qnpifnwv63wk"; depends=[]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.32.0"; sha256="1lfp54kics0lkdhwyr78fdpwhyf3ziw9hq2mf648a0dinrd8m9k3"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.14.0"; sha256="0xvj4z8vh2sv3gl5nkrkmjdvvallixdf0dyqbnpg7q03kfvbnw44"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.28.0"; sha256="0klrnxck0q14birnpwzkiwmj77hwdn6gazvdg0lqn9y6j5mbkyx1"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.26.5"; sha256="0jyvz7pcnxl7vc0b6rnwcc19pwijk6h26s364jskwvxk051ribsw"; depends=[MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.4.0"; sha256="1bdc40cyfkwk3y5ab8qnql0g2k5cz025fh4n6bisil3372jick53"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.36.0"; sha256="1s9j6ssxhbb5vcik7rdkfkm1y9la1g3ys91xdfyc6hpxmzxckgvk"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.14.0"; sha256="0abmnnawn06m4dyh6hs5hcdlhwx5l5bmlygzizcy6968d9x5l4w9"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.32.0"; sha256="1dx3568szd4i26jpl8i0klqqh0qgi8mgh5i4mmmkxwp44p10igzg"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.28.1"; sha256="0644cwq481n5wk49q52jjwg3bkg2hpz6bcw8hf5y5v9vl2dsnwip"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.34.0"; sha256="088w2c7xyz6zsymwsm4s5999q6sry0xscrs9n8sv6qzqhpfisa5p"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.6.0"; sha256="0lwcfprv17p9ng5x3arr9j67234y003n5g45aqcc39qiz075y8rv"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.32.0"; sha256="0l4n4wfd24l0lx07b5x947ngp4wyyw2iajgyam4h9n99k8cjkmnl"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.14.0"; sha256="055hjyd29rjw1zh5vq0r4pqiryrjzay6fpslb7lwkp5g7xyav25w"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.32.0"; sha256="115j17lkcr33phqx6ps90wj7jljzbf6cnah77ambzk1grfniw0hy"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.24.0"; sha256="08jhv4sq8wkwfv9klv6amf8shdm95qg9a5wl1pbxkp3bd326l1hj"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.20.0"; sha256="0ifnlf0fk901spsqpm8gqy8d3fizb3axff1hf7wa809n5mqzhpvf"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.34.0"; sha256="1p7cnp2nx0ar1gimwwsnw7brnlrj7gnpmv687wv16vmab5nnk1bx"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.32.0"; sha256="0kg8d3npjkvpa915n3m9v8q4im4z47npgwj66xr7jjxy0fjrigg1"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.24.0"; sha256="1vmzfy33b11ac4zhc8b02ksfhnqc7ypzhb0nrgab4gd0d0mylvs1"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.6.0"; sha256="0h0rh24cqh8s607wk7aaf4znzhxh88dx839mxp61glqrjhhpkp8y"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.32.0"; sha256="11hfy58hnvaarsrgvqrz51y25sdach67qksfc51id45nqr5za345"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.32.0"; sha256="18qr6wvvarvjzrknlyfvpdwpzw4gqwfjawaxpyhhp3yhx3n6vyxq"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.34.0"; sha256="17i096gjbsl7zgy2i3nh2nl4gdly7pkn151m0bn120cd4381r3nv"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.0.0"; sha256="1wqpibrfjzrpi2mzij9kjq74z3mi08dmfd9j7jviwq7c1hskycj4"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.24.0"; sha256="0f2vm1qf9irqk7xj0fdkvaigxpv2srni187378g6zbm93srrzs9d"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.12.0"; sha256="1pf01g7pi37rrqgqan8zq8v0q3h27p2djff3f5zqrfn3d02if4lv"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.22.0"; sha256="0kk416rfl2sgx6xfnja32jx2yjixnm306kj1h7vg3xnfy843gzin"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.32.0"; sha256="0s5a1lsjpwibqaz1ghwlk1my5fz11kqhymb7j42c3jx6sc3ka6g5"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.14.0"; sha256="1lkbgyb8camaay0yjkvhl946dmashzkraax7janqprhdjmhphv5h"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.16.0"; sha256="0j8sjp999ri7zj9xyfm5cfyggikp5ihyblqbcy16rzi02lz7ns99"; depends=[]; }; - GSE103322 = derive2 { name="GSE103322"; version="1.2.0"; sha256="0h84bf69kvqrvyp2syf3vjs8avmrjsgv3gfm2ib5wxnrgfxn6czq"; depends=[Biobase GEOquery]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.4.0"; sha256="08wrw8h81mn5cg29ry11mchxl51h9nnfdxn9yjf8ivcjhklcy14f"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE159526 = derive2 { name="GSE159526"; version="1.2.0"; sha256="18i9dgvhvzjcnx63qchd6004yinqj8mzxm8yk3dcgcgb2r082f04"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.24.0"; sha256="029fpng282x99yapi70zxlkqbh2xy6l0b4plmf2hsakg45ybg693"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.32.0"; sha256="1mgjy2pg9j4zr8jacfj7h6q4c62s9mmg3dbkkirwq4gki9i5hdi0"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.34.0"; sha256="0ii9gc17hjx1gw06q63s0gykvch673rxa7czda76dvj0qvcpx5v0"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.4.0"; sha256="1asclqpk9ixbf147n246246f3ciw9qsyq1i0v0xgd1nbzbqn12pn"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.24.0"; sha256="1032lyisc5gzzsnzdahb9mz03pi7z103n8vyfjpzrri8jhrbbaya"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.12.0"; sha256="0dqi06mwa7ss1z28pic8kr1v85njqv596z0ik3g5qfjjfvc0h2za"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.36.0"; sha256="1wbf00bvd6rpszzfwplk6q7b5v7ih2jdjbcncg9php2ji76ij58w"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.16.0"; sha256="1vdk7r7v3vvj6lils4a30sys5507qnlmdk775bl4grv16j9lf2pb"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.34.0"; sha256="02mjs27ypk2gfa5rvgclb143a1hl3cciddcm5wmg90666q85bm2z"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.36.0"; sha256="1hqljpiing2gzkizqrdv4wh3w0gwp6m9zs9y68sqhdr4f9w7azn6"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.16.0"; sha256="1s9h638wawm15gmqrgarxxhmwbvaq86i36s81knbzamhrw95gbgq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.10.0"; sha256="0pnrhx1x3wlxjq42igcdzdw4zgqb89gh666f7l48msqx2gk2lhly"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.16.0"; sha256="12whx0pl9461xbak5r9zi6ggx5is8sk6mgrbjwlmx3mbr9am116v"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.24.0"; sha256="1fq4kh7669fw1qxzfz42zfsw9fg30niqzz8g54qaxyl3ljbfw7f4"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.18.0"; sha256="11mwkl3nahvrb85r0jgbam464w5hcwsg28a5dm9fqzrn94m15nkx"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.22.0"; sha256="0lpnqzrdkq1k8rwk7b4kg3848nqiyr3wl6vncy963xqnjdwpghzc"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.16.0"; sha256="0imrwr1iy3slnvs59xmpcdrly76kqy3h8bldr78dzi9r1an30gg4"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.32.0"; sha256="18rdg07s4m4p9vqk3lp83x7p0zvfrfnvg2khhb7shqjdd9ya14i2"; depends=[]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.8.0"; sha256="0m95mh6bjjvd343ysnl97npif557sjxm0nfa2iw3sr2x4pwma1zz"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.32.0"; sha256="1wmszish22yb9sh2c3i6fz9l17w0nxba44zbd2p5jks7frgryh8c"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.22.0"; sha256="15l3fyvl534zr2nn102dg98r82iwy9g0imnmcpyrmx467p74iqb7"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.24.0"; sha256="061v9ax5pf3f9l54xhyskz7bmb4878xf2s05z5rwhbw6hj7v9bcn"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.34.0"; sha256="0vg5aq813n709hmnc1w51ynjml23q6xsgg9my3p4zim765clc1c4"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.32.0"; sha256="1jlx2gpnlgivfhggl6cvj1spv4y7pyr6pxlgn8859nrw49jjdj1p"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.34.0"; sha256="1h9vlif4dnzgffvab31i6qp2zcx8aph9wr71vgif9ayzc4gmx2if"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.38.0"; sha256="0as22vdrw61hr39lx29wa17qfmz47q267l9i4l4jxldcm349f609"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.32.0"; sha256="1palkamhw8wdnliyw9avpk1l6kpz8dhnghjpzdk4wd0dgfnfj2hr"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.24.0"; sha256="0g80f0zgl42p84br6ni8q0q4p2xcdc675kx1l6lf35jb845vmsgy"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.16.0"; sha256="0bx4d7sjfr9p4ivwcpqblsshkymlkgyxm4mpxc3mhcv579ir2nnr"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.34.0"; sha256="1abzkzvz0i8yvdpwrcrdzrq1g99rhkws2b9b7zafrqn8zljwm3kc"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.22.0"; sha256="1x26wcysd56wzijcsrs1r0rd8j9naylfbbr90b54wd24sfrq970c"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.4.0"; sha256="028gzmv555wb7pq41058sbacspjzxxqrmkx690aimn93y7pg0lh3"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.34.0"; sha256="17awdhd23fwr3i81vfcbgnnjibjp7q3z497zmmgm5q8fx79wfrrb"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.28.0"; sha256="0j4acswm0ixgkbgffnricap8rf1b3jp3mzlbb95p46jh9kxm9b2f"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.32.0"; sha256="1ff43qfigrbh78bdc15agvkwagc6vr6m9qjpirqkchvhj9xzdssv"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.34.0"; sha256="163za70mbpqkkm5q027vilh4q9b7pzqwakqn51hkk58qi2sbrl18"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.22.0"; sha256="033572y1qr5dz279rvd64w4rivxzhafnmh71cr8g9qkf04g8ani3"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.4.0"; sha256="175g4x0hvbyjwm8vs64rj19685ibdncq9ph972c1rip7nlzj0raw"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.34.0"; sha256="13r4a7m08h6n0b7c4q3w30sh1w8qxhhck66fmx95jimdjdzf04zy"; depends=[affy Biobase lumi]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.34.0"; sha256="1k8l3vc2xrsf9hni3dfim2r9dll6cc0njzdg7ailf9hi8lbc03xp"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.32.0"; sha256="02s88wlxgnl90ypgzxbspv1zqngcd3gbr9li7ng4snp5l7sgmpb7"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.34.0"; sha256="14cx5rv123z4pglbdwyndm8v1zvvf683ilv102ryzvnwsp2g2xi5"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.20.0"; sha256="0raz59fz568n9hsams91higf6f6q98nlgcapz7lnw9df7d5zmagv"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.10.0"; sha256="1aibly4pw3swf6qyx4gsnfqs0p4xv8wcq37lmd0b58bvp27ficrd"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.32.0"; sha256="1zfyp8q2849zmmp2b0ny7wbrhhsdvyv15xf2glifnhbpzdrrwjhl"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.12.0"; sha256="12vhcc6q52x8gxnjplb8bdn98pmrkvldc1h9hkvhgs810i96dhz9"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.14.0"; sha256="11a3rv09bljyvx4n3rhl83iyxsk5idl53cd1l016dc21z0wy9aki"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.16.0"; sha256="0vxqpk6ldsj1bmiyjalss3k3hkwic04vs4flh75djxhg113zsxx3"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.16.0"; sha256="0qgfml7p39ra6svj9i510ff01k4nbns85068a7gh1v4l85ykgd11"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.16.0"; sha256="1rjj8jxcaaz10rq7aanz3zw0z6sb1lmzy1ya8cl2icyalcm6q2k6"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.16.0"; sha256="0ppyf8pmq0pr00dvhb98qp19gcfsf9w6ix9d1yky8cf7l8czkqia"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.28.0"; sha256="1gkv07qn4qxya3gcfppdg42wywzrq0ama56alf1z15knwn67a8ps"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.6.0"; sha256="13yfqksyda8m1ckph00cw37j5nvs3aidbqb6bmg9gkw4fg21hc7i"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.10.0"; sha256="1drbxbh3qzmpwcbk8ly2r9hw5lr99mvzf5gjnl972glfy6fvjbnj"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.4.0"; sha256="1imk0s5h9v9nbwvdfd5gnmlqblx3wnws32spdp0q40p3dg5zgp4d"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.32.0"; sha256="0k9gc22zzfcnqz5ahz250ycry1l1rczlfpbg9j1dwjbfs76zib2f"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.16.0"; sha256="15kggy2abfq7a92yh3r0diqz0ddxfzbk3p0v85jh8h38swv94766"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.6.0"; sha256="1cy36izd1h3c7qz9f6igvljph8bmvlvhyvppwgiqr7k3paflf489"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.12.0"; sha256="029rj9cv22cmk1arl68836mq7cav3rnc9z4kidakfk163r830v5p"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.34.0"; sha256="0izjgs9p8rw4psvvwg6cpwa5pbh8i9fz1q8slllarj1yndadmg0l"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.2.0"; sha256="048j52rbdys46a3m9ki9aphrrhlh10zq4yl19qnp65h53hcz0lg5"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.14.0"; sha256="1ahyaalpn9rimy65jjmxgx5dapblvwibw153rgwjkz4k4p1v9p3v"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.4.0"; sha256="0nhlg364rvhaz9xv3hkszkzas4i1qx14nssv802fxlqqg87gjx7n"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.18.0"; sha256="14pvc2d2zs3h9r3rh1rip63rj2gvm0lzf949b5jb05qhkc26wzm6"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.24.0"; sha256="12qb4wl6fjqhyavvm3y41psagkzrazlvhnwhdrbcp6qg3ql8770s"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.36.0"; sha256="1ia19649kxi1w1i5qlnl3hbrwq28y7mlrz3nldr76p1kgyzym6lq"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.30.0"; sha256="0shqpciskbbdz7h0w873fp9gdajsxy7wham58hsik8zg8sjq7nlq"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.30.0"; sha256="1giqjwwndgx23kcmwl6qlfqkqs2g57rqy9a6rk7f1a2h9n6v92vh"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.30.0"; sha256="1g4pxsc7rl2bg9q1gvypwydf0fr31raqw3mxdnmprgai2rv9g339"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.24.0"; sha256="0wf30zng7prgb4qgv8mjgg0c3d6h3ni82gb2vpv6n127vkbnv99g"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.32.0"; sha256="09mlmqax71q4ha4sq2ar33g4nsv9sszp5jl359mpncpgf08fkpnf"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.14.0"; sha256="0jfyr3ggx5i8bzhh5ajm2s78knrnf6zaq9mhy6nyq619546dcx3p"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.10.0"; sha256="0qv146pgzjhmdsg8yclddvc6bpxm60j1jhjfv8f9jqsnvbllqzbm"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.34.0"; sha256="0zg74wn11w2fd69lykl06k9sb05z9cmac3w1s2gmfdjqy3nbpi88"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.22.0"; sha256="1da28hnshxq2vy6sgs4118akxy3im92xda576vqw76nnjhp9ly1w"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.26.0"; sha256="0x7n8xqf510w4hirdr8g2g4dcx2jy9psgnnb15gsvrcgvds802av"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.26.0"; sha256="0ij9clgyczvkxc7529sz4zxdkrfpdjasmbbfycka228l1xqqnxqr"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.24.0"; sha256="08a9fvs4cigl3bx6s3my92njbj9gpkfsdyrsimng4ykkll25jwji"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.16.0"; sha256="1zkwf3wll7b786kfpbdzqhzhqmznx6bgdc4vlpzb1i2zrbsw5c5z"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.20.0"; sha256="0s8d8im2czp79qvch87y3swpfmcnpp3pa341zj3byiyc7agz1w6d"; depends=[]; }; - RLHub = derive2 { name="RLHub"; version="1.2.0"; sha256="1s6mkz1kv3rl68rzpnpi5m507d9pja2c58vzdximmpl2b764j41k"; depends=[AnnotationHub ExperimentHub]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.34.0"; sha256="147jdpi61jg87p6j957k6cca4a2sx5kzrbm4b9pszzrzrcvqq8w5"; depends=[]; }; - RNASeqRData = derive2 { name="RNASeqRData"; version="1.14.0"; sha256="1bn6d0zn40abqn7gvr82i89r1fwyaj4wb0hvg6rqcmmqdfqhbrs6"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.34.0"; sha256="0yamvw8r3zjmy4rvxswpdmav0n1pirk930c0z20chqzmz0fld7ls"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.10.0"; sha256="0c0y7mvj4mnq9zsirayj74pxsj78qksbsaisbfikbkbabx7v827b"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.34.0"; sha256="1qs34fnlkbjlnqfk65m63lqbhqd773yzi4dwv8b1rbv75hqcmywc"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.16.0"; sha256="18ijbyfajiydarrr2wqf7y4spf40k3vyg1bsm8qdam6l1rg40d1i"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.24.0"; sha256="1m36f15spkg6bkiympda0r4sb2nai7bnajvg3cfdypym0javmjni"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.24.0"; sha256="11r3xy84zfzp4ws9g8jn0lqbqdydlzsi6vgxh1xyf7jpv1m3qw1r"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.24.0"; sha256="0lhcmp9mm1f8biw05nlg0hiqiyad7lz2dl06x9bhyz8aggdpdx5m"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.26.0"; sha256="0iipvf5ii185q4nghwqmk3mp4s7wdbs90hk3mdc96f7qs5h53jzb"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.24.0"; sha256="12yjxqq49jbss409ms8c4a5lxn613d0cbin2h8033z2ldk73zsnp"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.24.0"; sha256="0si0xr1d6013f1jylk6srx5n4nfrlr97dywh8f4hdwdk5fsn2nsv"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.24.0"; sha256="0xf6yf3phyagmysavgrcfpv7n7h3vgvf5in1m4n5my0168b9xi35"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.26.0"; sha256="1zdpghr75vj9x4ldw0gzxkanca4zzl3fzmx61jr9jh5lkgj8h4vv"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.26.0"; sha256="1qmp5nlvqcb2699fcyxgngsyaygygajypj8m1an419xiy3kxnjdp"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.16.0"; sha256="003gf94pfsimc1f2xwm7jdndkng9hdllhvq92il5y4kjr6ky9bkr"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.16.0"; sha256="1wi7g1246p04ld97x11pkb7hy4490cq5pfw404xhcmavm6sbrsps"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.10.0"; sha256="1z0sridzwyfq3cxvmv97c5mg96z5aylwpma35kizzi1y5y7xjqnr"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.14.0"; sha256="12ak24899dp4184xc2g549d22zxv297aaz1c5s3zva821bv43djq"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.34.1"; sha256="11i9r36n3jqwnf1q3fawgk26zvs7zkixq8hmfam7d4kaqj5f9kvz"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.28.0"; sha256="13vjqi6n6swz08qzadycn873rls1wkzprmf2rawx7mrbsy1cn5zh"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.28.0"; sha256="0wdzm89rn5z33sk3jw9f8yq6f23k5m5pv6ysbf8irw6s1g6y3xr3"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.4.1"; sha256="10gixzi25ka6arxapn04yxj39193f1b614ynnn1795hbz1njv7a4"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.28.0"; sha256="0ylvnw19j3fqgyp014zyzzpwhwj54bcl6r8gc45zs9py82zqkmyr"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.28.0"; sha256="129rv2zlqgqr3n64gx6y2ippqn2lrqsh6g5br1zh8awr9lbkp6bb"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.28.0"; sha256="1qwah52mc5pn27nm8c5byjyf121830yvfi9a4qsg5lqlwysfpnl9"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.10.0"; sha256="0gh4qs5r13x8rlf3f7kn63czbc5rzds5j27flk60yx70cinvgf6q"; depends=[bookdown knitr rmarkdown]; }; - SCATEData = derive2 { name="SCATEData"; version="1.6.0"; sha256="0g7hydh8prb9in64iyn993kg1i933l0nian00rh8n7lhhlhsmcrd"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.28.0"; sha256="0mmw9dzpx66hdp0cmzq8j2w07ckg1887l50j1a6szanrm0ln04ig"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.42.0"; sha256="1xlqmfscf55q5j3k0ssvyyvgf5xqj9ypypdj7qcwn9izgn6ihpv1"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.32.0"; sha256="184kf4zqy924p776pzdmlbly8whgkh7kdqqcpmyra388mmish97h"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.26.0"; sha256="1mzpkhr9apm5smp8w7rxdd61yizn283hhr2hb3s9ym05nrfgwyvy"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.4.5"; sha256="0gdizm0pkzd9hwmpbdb1pq5w4q286vycjx7vaf79gj8rrha01k5z"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.28.0"; sha256="1ycd1ihlms44y4hqq3n7l8hhcc3fkvihmsq3vm5434k1zx0prby6"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.4.0"; sha256="1g8yd5h878r2cnh9s3iwc2q60syrxyjg5riiv4jzz3xv0s1g6awd"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.24.0"; sha256="0kzwjl6a0y8j4kabnwdnprb19riqirpfcf465rz59w5gyvqg2k2q"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.8.0"; sha256="0cmzjqhgjkgmji3bps387siq2s2k8flv4sksk6rh754wklry7bpm"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.4.0"; sha256="1mi27fg1xnibz41fw2xlnj81mbszs8jfxiirky5x3358xac8n5fy"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.34.0"; sha256="06k9g27f92zvahr52jrdn4i504n215w02hrk3p888yh2jyypkjif"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.32.0"; sha256="14yxvvw2x2qmp3vz7xiqhfdmykcmjw36sikdi046zqfcfqxq1vrw"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.38.0"; sha256="1mvzixy1s5xvfgi3hf1z21mp7587v1byb6vsi9yiacc6knm55rih"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.36.0"; sha256="1rx3lsf50v17rq5yd45w35xbh79rh6pmyx73didv4afsy8vcq984"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.32.0"; sha256="09nawqwz6gq1bp9vgqg2nm0vb1f6id7nzqi742iz5h98p21y3jn9"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.32.0"; sha256="1hiqa6ww5rkl9vlp5fn5fzgr1yl8br8h9s8knhcyfw83bmr7ihkb"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.20.0"; sha256="0ffhinj97jgk6z2qa1bk1dzijk5vjii41g8cnbs0rcshpllc0yiq"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.16.0"; sha256="1mb2z59acs1pi1gqvgjyh62wnmbxskc5l0p42gpjajsjip5x1x7g"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.16.0"; sha256="0sjdk1kxpj3k4slrinywgd261jwfwa6ba6b19fz6gjik0w900f7n"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.16.0"; sha256="16p8zbrrfah2hmkjysp3aagvwwn8g437yqrf1a0wg2jaxh246z1l"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.10.0"; sha256="0kblhl9b0vjngfnh8rdbsbs26pgmy1xx47kvjj7qcawb3s0blc96"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.16.0"; sha256="1cb7sbk1hn1i6lw5k3q6p7s501q0yrighfcw0l5abvb4mz9xm1rh"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.14.0"; sha256="1mybd23fck9g4wqvhbh1fjvwzn23h91dlr7wvrh91s61yajj01hd"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.4.0"; sha256="05w1xqkd8bb2vi1i667pshpvs0913ybx87x3vlhj2fzmx5jjsllq"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.6.2"; sha256="0xhnmg8ngvjk3zwafyj04qhij5v101q2m69fcxsqnvvzsb7vyqi2"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.14.0"; sha256="16788gn24810c3qn4s2fpffl6sgfzar2wyv5fnay3p29iv66nlww"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.2.0"; sha256="17vx35lgkhl5w6ny9a3dc4p5rrv5ywh1qg8lvka4d2jarv18gn8s"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.32.0"; sha256="0xrfp2jqsp5kf85mc9bbalpr09hhzspcg0305mzf9cyf8lpms3n4"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.34.0"; sha256="16kc003g7l9k6yq0z7b6a4yzgpkz4b343fzzg3lf9ww1565jfgr0"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.26.0"; sha256="0hp6lfxnwmv18ci15gjlq5va2926j1cmv1lbxqjmjmkj6p28gbdy"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.20.0"; sha256="1jdi9045iq09gb3rfnz5kc83qhqjbqkda2vg410d86v78r2zzkwp"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.0.0"; sha256="0lp3fn9x4hi2fihnc66cvziw0x05qmcki06za5z7k761pbc2cgk0"; depends=[ExperimentHub SpatialExperiment]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.28.0"; sha256="027ga0wzqmd1j792drz6qllk221d6rfva3hfqd7g0grbzb0lipnj"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.8.0"; sha256="08g71y2ix377if47jsymdqip6kiy0hs198r84a83pwxrbj4a66zf"; depends=[GenomicRanges]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.34.0"; sha256="0d7gnay3jhcxmyyh45ggq6dfh83zz0s2z9rjr98dbx3jyhhy52mn"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.12.0"; sha256="02r7p1645vhhf7wn5x0aklmf7l97h6fjb8v9mldim4waccmpyg48"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.34.0"; sha256="0lbdjmpy4460dv9s7rkbbcvhzpyqmb8hr40hbmnrjmzi8b5rs2j0"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.44.0"; sha256="1d8ims7hks536v739r5hhfkkzyzqrf398aqal3hzyfm0psv15jbp"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.16.0"; sha256="1m0llmb0z8vw8as81qb2jawcxgad5ivgl6s3vgm89zdr3a2lpxjz"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.22.0"; sha256="187axprwpb25lfcxw5mxbxsav07iqkiknd0yh77iff9hhzf06van"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.32.0"; sha256="1b8xxkg5qi8xzs4ax9cvga9b6sbvwfna5w5hi3x38lpxlzyp9p45"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.22.0"; sha256="0w6v6hj1c43pbadb20rxmfhxgqinz0rrz6nc59mzb6zm2ydcg7z5"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.32.0"; sha256="1lwiii0fp2msnlk6c9c1xyh03g5cmx1r6jf98sylcaz93s63gz0f"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.34.0"; sha256="0pi4raxy7jwsbl2ds49wh00v2k5gp42y3cl7ipy5ammkjyjz4fa0"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.10.0"; sha256="0v3j3v987gz6wi4z7l4wavagkk59rmkgfy9ynw6v6v53gjmwjrsd"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.34.0"; sha256="0z161a395ykd2kylfmqql4ma6g4124sykmab488vz7cy7kmgi55j"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.20.0"; sha256="1ayxv1nlzfrpk1q2rrjlfyiyzhnz5hyd1mpw40qyp1sby7qkhwin"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.10.0"; sha256="0nda6b8mkv93s513y0xfgxvi7zn8v07jx323ii709rknlncm6qqw"; depends=[AnnotationHub curl ExperimentHub]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.34.0"; sha256="1dpbaqsqizyi99r0imf5m4lndhhrkyiaqii9bi8rp18fjbjdd72k"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.16.0"; sha256="1xngnh8fgwnvxcycnxzbaqlwr478aqacj9xh9zcig6xvkqbvdan0"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.12.0"; sha256="0cm0pxk47axi2kp0jl2ix03vbg4q54fsq9wbrlz6gy0zmab05qy8"; depends=[ExperimentHub SummarizedExperiment]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.14.0"; sha256="19xmwvx70m4s6naxw1m13qdyxaswmq94mhxc71gnfr80w9l28qdx"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.34.0"; sha256="1a658xkiimhbhjic4mwgxccsrqfi11l8sjyhxlqzwhqpg25s52yc"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.34.0"; sha256="11vbsam86zq8zpc871gnham6dpvz4pivj8bjk64r9nclcl6msflm"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.34.0"; sha256="11p77vhp4qjibglc2gyj3ljcgzxijh6gakq1jy9x08hwbzbk59cp"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.34.0"; sha256="12736cr61fnaq2gladlnpa6247zk3mbgx4gr3m3swfr1xzfjmr96"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.34.0"; sha256="1688njb87jlbil7j0lpa6cvzqs9j82nxjcjqwxvizwwmwmsybygw"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.34.0"; sha256="0w1vd8v1ld81a20l1rzjbfsf3xyd6r85ifgpyl63rmk4zlyk9qa1"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.18.0"; sha256="0ls9qyv6p8g64cibrxavch2z9yb057mmhk0wj8a3qzp2yammp866"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.34.0"; sha256="08jal96cv14wym7c6yv10yh4qcgzqdgi6x231v21asmawl0gjv8n"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.34.0"; sha256="1izn9qwsvr6nic70b5iwpn06if2wvrsh4rvrhlj275q4s91l1apk"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.32.0"; sha256="1x28q46y1794hr8b2bmdy5agwy3j8chdk6lczwkqsqb7qaccbgxl"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.34.0"; sha256="06dijhvjzi60fd7bh6m4inf1yvc7d2p6swmp887pfjap5id99hb3"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.34.0"; sha256="1ag9jv5y6ky3xqqvsln7xcpa7z4p4jm3vqz16dmxm92ldkrpff8f"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.22.0"; sha256="1glgrc3z7q2pigivhh4q0aa4y354bxfxyhinz8vdr2nkrnh5fl6c"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.14.0"; sha256="0awh198v9swj6mpa3pihvms9ml74798hpywhfqmmakpqb8i5nmk8"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.6.0"; sha256="1fjldmhb9yg6yr3aq5ldvc8xwqw71ix4cdlr53xxckgwljjq7x10"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.20.0"; sha256="1hg728bncvw008fzpw0cxy2haq5ynnriymyb2dwwa9yi9bzqhcs2"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.12.0"; sha256="06j0jh3kg0n0jfa34iwmdc4j1h96wgvg0i5rwiidmdzii30y24a3"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.22.0"; sha256="1ajwnkibpi01c93nrplxhy6grw8jj5219g4pii4rkan4k5815kv1"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.6.0"; sha256="1ynj9h7cgg8kdb97g8bd0rvzpyjfqbs91c1jcj5gsml2mqn20zb9"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.32.0"; sha256="08ag0mj6wbhgrs5csvri6rm2c61hxzspgm6p2ggikxp8b98dq249"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.38.0"; sha256="15pid97gpg0hcdh8xw8r72qlm1k76l6m0zmh12f1q2z792bqv3v2"; depends=[Biobase]; }; - crisprScoreData = derive2 { name="crisprScoreData"; version="1.0.0"; sha256="0qv93yx25zrs7xn3w8f298b1v0jmgsdzcnlivhr8va95rlaa36zp"; depends=[ExperimentHub]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.8.0"; sha256="0xhm84d1g1mv4x8lavwx87346123nd7957pbvw5ajhg42ipz8qwl"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.12.0"; sha256="1c5mg1f4d6rk4dx0vfs5f8fk15gh9gqnh2n0z6a21ial3pz2hq16"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.12.0"; sha256="11gb3c4bvzxhhxrzi5y6p2703r4nz9qf8w996sh9giqq0kdk1iaf"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.32.0"; sha256="1qbwxfpicrqq2xmghj0j93nk6fyn9nqr3kj7hh4hhzrv71kgrlha"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.24.0"; sha256="1lfb8dw4c3dg2dxqdy0ibv53savz6qyavj03lyxvzw3rg052lwfy"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.28.0"; sha256="18cwky29pic2ixabr5ckzl98g9xm1yj36l3xaxk37jav7brnabx1"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.4.2"; sha256="1fxzb60jqbx4kc4lqk0gcbq1981gzjxvpapk96sswidjid44gg2r"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.34.0"; sha256="0fnvsjxs3rfr0vwlnqzgs3121jad85vff3f34rjiq5mmgj8d3szs"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.2.0"; sha256="1ca5vnyzcdarrdczffj88nlchzkx3nrhpxh4r8446yvgm9nq1f13"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.18.0"; sha256="0h3mpwy6lhyn8hfry13sdjgb35gqyi3g26igfjqzshc5wvsniwpr"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.36.0"; sha256="1a2wcgw7dpsk86516c0qqy6lspc5ilip9ym1hdjmdmldw653qgw6"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.10.0"; sha256="0378blcy4k440xfjsfr6d8fzgv8v1gbfd7jq2jqawj8s3in3g8sc"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.14.0"; sha256="02p2zz9i9g6z20fvc29i31nrw5jamw0sk9yf3yxq3211xprrq556"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.24.0"; sha256="1h7d755akxbsb68mhddqck759hfb5ahcv99040xl5pl0wg76qhx4"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.28.0"; sha256="1i1bj3fhkp9g3szcsf4z78mq2nwk9s7gbhwzjz87gpq1ly0wi5zm"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.8.0"; sha256="0yby99xncj8625rjc71wfp164bkbc00kbqaxx1nhhcxx5wyb5li7"; depends=[bcellViper dplyr magrittr viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.34.0"; sha256="05rajbidn01mv711xm8w5ida2dxkykwby5q3fm6wr9vk9hdg6h8y"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.36.0"; sha256="01j7gwzdg6q2l2nqbmmhvg4c06irjlgvqj3gcwff5m2372p7qgn5"; depends=[GEOquery marray]; }; - easierData = derive2 { name="easierData"; version="1.2.0"; sha256="1hvm8xhjm7xx2m8r9w2hfk1naj37mnyzg76ig2yszi7g20xxkn07"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.36.0"; sha256="1nncm8k9xrn7pi89skbqkp01bwnkr8myzxvwvdqwwpdhz23h67iq"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.4.0"; sha256="0wfqyyncn8y7dbpiq9ydqglbci1zcaxqph78h3f0m91gsyb46n48"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - epimutacionsData = derive2 { name="epimutacionsData"; version="1.0.0"; sha256="00l7mjryq7zf83mf9zwfs6pih7lncyz0310rvbgmgxij0d2ihcs0"; depends=[]; }; - estrogen = derive2 { name="estrogen"; version="1.42.0"; sha256="0s6gaxks4z6dnj304j2hliqyqs8iwqdvf5xmca31xms9sdix57nv"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.24.0"; sha256="1s4jq4nzl33fll7k9b88divyhi8phkv2n5629q2qa8ag2rvdw50g"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.4.0"; sha256="14wnj0dxdbrr57blvi1kmgjxcmy8h6b85zyjk4ksnz3jqnb3x4zx"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.36.0"; sha256="1z23c2nlgf1ssfa9fmh6qbymsgwj8w0sslnyyiwmq6f1c5slagdk"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.34.0"; sha256="0ps43wp6ywz3g92dckcmczh8g26fz4hg2w63bjzkpyl9pp6g70jn"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.34.0"; sha256="1493i3pgq12afp97rm5nlslkfqh87vr0hrw2r3m6d76xkaxmq47f"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.38.0"; sha256="0hyb9cmqpnl98gpvjh5mrrbnzpwsqlnngm0h88rca6jsxgzypyxg"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.16.0"; sha256="1xp8a0qvskb4arl2h937zvdx23z7xgjfa46lfk35pyl398vvr04p"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.22.0"; sha256="12n5zaikca17w1bwc4hb9hxj28vdka1gz2x62hzd552baimv694c"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.8.0"; sha256="1z67crxi4vd2s4sbraj8i1qdnbdjr28gij2ygv3j0ys6jscwvz6q"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.32.0"; sha256="1am40f3b3g6rgbsji52a674x8s5xk2zgbkv7z4mrwcqy3qbvv2kp"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.24.0"; sha256="04bnqdbfmkl42cpflq4krwcc6g5znkajw56vpcxa8sahcqlzlz50"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.34.0"; sha256="00s2aig9r0bvk45brc0shildrgl2z0i0k8xlvqc9h1s274nnslk9"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.34.0"; sha256="07s469vdj9zbqaq660asv10qlsg03ga1ln0hkq5xxqqjnwliy0nr"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.36.0"; sha256="0ljyahrd2v4kz8y26h16apc2yz8a1fg54190ryy30v7gfdaacbad"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.34.0"; sha256="1lhgsinx128qi2rcm577smpkdnh91c9nn05737pp0ww2ys8pziqk"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.32.0"; sha256="0p4rmd3qszsnyn47mfbk96zfa0bhpyyvsh4ma1ligjrsnmkicsaz"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.28.0"; sha256="0ckdgmarndpz6r0y9sd4nmypzjgivj32w2890yl15xmxkx4397fh"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.38.0"; sha256="02f30hxg9ap1na59vgq6zqpnxba1yv38v458bx2ppxj2pj7jldh1"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.8.0"; sha256="0zv7djz65lm8a3d8ybg1nm5r2b7byh55g78v5jmskh6jkv9njd9w"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.28.0"; sha256="14hn88p65jkd44skf07v358rr5hbncp3mlsz2xl5mfyxgl124fcd"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.16.0"; sha256="04cwqilsaiw9x709lhb9vrv75lhvhfx7k7zw400nf5h4pn0cgxw4"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.38.0"; sha256="0rabyxvlxgzawdwa3q0xy2iqdlkcgmzbmqc4052ndm7wdh4h4s97"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.38.0"; sha256="162wx2g4ghh6b92d9q446js7qk2j5ahajvbynckg2ggnzavd7v1f"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.38.0"; sha256="0wpnr9xvpaki01hqkh5pm29d2vcb153646k9b9m3xvlv5ra3qr9f"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.38.0"; sha256="1g9kv2jd0527m000scr871pk08h98cf9b8mnasgbm5isvfpn0fwk"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.38.0"; sha256="0dwfgz9pyx24mn3vncxp3ddb0bj42zxjd6p5pm34rzwzsw8zlvby"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.38.0"; sha256="0byanf3i5yws4hwnxpd5b2vkr9iqvc0h2nlbxqhbc6b5ny7n0fsc"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.34.0"; sha256="1q17lynp7alv95p6vn515iamyqz3s0vhj3vnyzrjyhswb1vy3fs4"; depends=[Biobase Biostrings IRanges]; }; - healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.0.0"; sha256="1sjicfsamv22r5f913g4xjspnrpqcrdcq5w9yqwqn7wz88sbarld"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.34.0"; sha256="0iw2a6fdnhq1zqhldsrg7z8b55qg23l721rgx2i8v09ivsrk79hj"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.34.0"; sha256="1n4jhlgvqggyf2qa2iqxkxf6hqsaawq32h5r8ns904jdllq4ryp3"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.16.0"; sha256="1ws42wafyvr5931vjv0zcyfg979zhjms8kfmmcjjwqbvgp6b8nxd"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.34.0"; sha256="1q8a5away3iz8skc093djn85sakixhijr2i0yfhbl50y1jpfxn9c"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.36.0"; sha256="0zmhxv5fjyfjxd7rqcr79yb8vkk014hinphmq604pzcdym29dmaa"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.36.0"; sha256="1i6gn462x09g9c6fb98bgchs7hwnrv5wanbpy41zcird6a8jb205"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.4.1"; sha256="0ck6fyra8jj8v3x1pckl90m4a9ch51xgjs6nlpva5pkwffjldzq9"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.38.0"; sha256="0pwrf9h1qgfb20jjd5izy6f01v14bzg43k2d8mmx3553ha9w1xi4"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.32.0"; sha256="0nqrg0k5g62kqbmhq0y795afx34zxzlmgsjszs8byfdhd8gbpz14"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.32.0"; sha256="1hzwdcfv0w4y877h4ahr2cmvv0svkjv73l77d7m309ikfbzmdqax"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.36.0"; sha256="072i02dshanxfxwpg7ibcp2vxyyqfw7q28r2a3f3lq9gph0pd865"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.34.0"; sha256="1lskd4gapfhsrl5ydzv3bjs5n7085wzx91dq8bziv7pmhzl9pvyw"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.22.0"; sha256="1z48qsbbxxjlfwmb7xyasskdy95paab96077ps45v41cwkwjv7kd"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.28.0"; sha256="1122nnkhhcyrf36v3saybfi3llarjsa8fnh6f5c41d5x6fyjp2mf"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.16.0"; sha256="0n6dk7n7gi3ffdwvji6nkl90hhrb1jg0c1dyj0xrd8sf2cnpn8kh"; depends=[]; }; - macrophage = derive2 { name="macrophage"; version="1.12.0"; sha256="0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.32.0"; sha256="03h0pjwaasbb635l1csfrcsjzrfw18cmk071p9f4w57rkx11wbmi"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.40.0"; sha256="1smi1kaygc8gdcdkv358ghblwvsz8239g4ck2d4h8gq9z4jkkqn4"; depends=[]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.14.0"; sha256="0nrss5d2vb88wygsm4b44zxkaq619svjf8j3gg5r6x13ss5x0vcr"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.32.0"; sha256="0n1nnljns0aq8xxa881r8p72wwipfbx4046wz97034y39i0l9rcj"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.4.0"; sha256="0qzyc01rhmay3h1pmbk0jskszrmpgsng32j40j8wqnnpzhmklwf2"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.34.0"; sha256="1yfsdkxc7ns4z0swrjg2pq3kfpgq9rrhrxsiqljnkw65c1g4h3q3"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.26.0"; sha256="1ww126vnlq2c36py0939i3vv7y6pf9kb6akgq8x96l90ri8zdpcg"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.18.0"; sha256="0p187zs1fhi55zm4yjbvx6xvdlynlm1r66x9dcd2xldwam8qmliz"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.4.0"; sha256="1pbwx3cq78k333mmrmy8h68l1k3g3r62a8qjx8ysg8q99q1yn63w"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.42.0"; sha256="04idswjc4kslnpx1yf990pd8fl7wk5v9x4rgbv73d0s0g578ajd6"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.22.0"; sha256="0mkq4q39fjbal4qrx8vx51579kzhhyryk017cgjzqj9cwycyr720"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.26.0"; sha256="03h803p8xcndy5gsrdy20rb4714rxj31g31z82rg7hkwn0cvqxkx"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.34.0"; sha256="13fjkal88ag1dxw5n4dpkbzrnhffqjn4pym5vwzgnczyggz40c8y"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.34.0"; sha256="0ip3238dkyy9773q85535q09yawxnc1f1sdvl9s0ydys7v4rcxih"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.24.0"; sha256="05l7ym2vnspnkdl78f5b2jyby8x4qvjhmbhqmkd8nsz7sb2q2f67"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.16.0"; sha256="0bnvsfgsl8ssin8s7g3lmdfk9jvbbzs6cn748i5vl5ac96567bb5"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.36.0"; sha256="0nqb7d7fa9l15bxy3s9wmy2h79jb6ldwww0hzk5mifabacmzx691"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.4.0"; sha256="1qla2hjzq99513nyknhbb44zpp65q52j81mn6g9ya3wg9686ggvg"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.24.0"; sha256="0j0gqn32chs0vmcj309xk9y2qh856zj6ps16n39ad4d0bbc1l7y1"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.26.0"; sha256="1k0ravb8h23xvk8jlc1vh73slsw5alqcfdrw8p6mzggzfd6l189i"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.10.0"; sha256="1vwvjjd53j4im8jpckcgc4x9ldy3s8gzknc30yw1i67f4zw7zlcq"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.32.0"; sha256="08mmwc8x47wc91ncil6bqbhy1iz8hr153yma52zbsw0nhdhs7b87"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.12.0"; sha256="0cm2d8wp6dy6m2jbj42inbba117zzf137g86xy07hn563izksqcw"; depends=[]; }; - nullrangesData = derive2 { name="nullrangesData"; version="1.2.0"; sha256="1yynisn5zw41kaspli9zs2k03w8ar457p0dsd37lph3cfdgniysv"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; - oct4 = derive2 { name="oct4"; version="1.12.0"; sha256="0jkhk1p7z5ydxwab2g9ayhqfmxayrrwswr9lwbx84n7jm3gdkncr"; depends=[]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.8.0"; sha256="0g72cliwh3jpgz3qsfp3rv3glhp6v0ligfzp3kh0xgb6g9nwc246"; depends=[]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.34.0"; sha256="1b1kvnym9aigkpv4n1wp8ybp507hwiqv8hc3x4hv72kdlfphy0qh"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.34.0"; sha256="1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.24.0"; sha256="1vsxh7mv2krkbdqs5gsgjsxarjbll0bpyk94syrwh56z67n7jyib"; depends=[DEXSeq]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.34.0"; sha256="1dcnas0d592kcmnd95g3l13b8fxf0kiwbpyxmhfvrmms9i2d6dfc"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.18.0"; sha256="1gwc793c7r7qi5bmwlxh6fg59v8jzs753ilw102s5r4kq8r1fb4h"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.34.0"; sha256="1r9xqqgx2asn47j1ib1z3v5ybxd88mjfyi7b64llhlv1s9igp645"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.16.0"; sha256="079wasdnd4j7pply4lmr7b41i84gj1x6yfp6pq7f7kbmr451c9hq"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.24.0"; sha256="0r69msj7yby4kw2nj1am7ww7ia7kian4bpx2j3v4il909hw8xr76"; depends=[proFIA]; }; - plotgardenerData = derive2 { name="plotgardenerData"; version="1.2.0"; sha256="0arag030zfvpd6niq5bxxkkc3dg86hhl9dcbh1knjgqa3njfyh50"; depends=[]; }; - ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.32.0"; sha256="1sza6d27rx05dg7xbzypjjf2h7m4jawhb2y0w1n8k9d57b9m6sij"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.4.0"; sha256="0sraqrvhxf7xva522rsj9hhl0hhb89fxrihywbw2w0vpv7ia08j7"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.24.0"; sha256="0kyfr8s89dv9psl4r0g7mr02y8yvsjpd6k2iqzbdwj3jqhwxcw4p"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.24.0"; sha256="1qsaz1fqf9iky3a4sjy0di4bamg3996qna99jcxp7nal0bj1q44j"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.24.0"; sha256="0a9yph83xrpql6k5ixic37v3ccpyf358d0ia5bgn05xfacd1il4b"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.24.0"; sha256="1g657bfhk2x5gldkxy3k4c66cjnlj0j5j0daza9y8sdibk6cagxf"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.24.0"; sha256="17pz2k8h1i9x37d2j4v4ybnyn2fl79d839bv41jxiciacxp3az5c"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.4.0"; sha256="1lplv1g38a7d3mlqdy18b7n9n2l834a2rqifsvvxdfimww8vdihq"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.32.0"; sha256="1zw60nvpdbnnbfr6ffjbhp7aay9xlk8r4dwi8di9g2352xp9i14h"; depends=[Biobase oligo puma]; }; - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.10.0"; sha256="11p1z66q6bpvh89cp1rqnm0kkfkdxfm47p7nfd9c45y15qpzbplw"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.14.0"; sha256="046xpnqp4pdvldbmw4klkjlhpzvjhv1zq8vamzzqc9hni6sjl3cc"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.16.0"; sha256="0lnff12cb120dl48pi5p2sc77vp4zapr35w9p9l669hwdlvy2jv5"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.18.0"; sha256="1bpsdnhdkyva7rbcxgwf0y85dngs2l43hb2c5wp6iafzvnb402dp"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.18.0"; sha256="095iv7hvdl26y2mbwa3cv0gdr7gn3irgwm72cvz4y5lkr4ifyafx"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.34.0"; sha256="1yc5vz3cvpwk449lga3f5w1x1xjp8a7c17k30z3wim4iv6g8ag9x"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.20.0"; sha256="1sg4h9pw3lwa1k01s9nhbh1l0w8w81q6m254hqs1ga8k8kawkvap"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.2.1"; sha256="1ks9fh82jqg9kcfkb1ys6b42j1074zffp1lyb3h287dw6yv8zxx5"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.10.0"; sha256="131x1q69grn16rr7lr6vyphds5mdx5z3kc6nhpfisrxjia9dly0x"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.8.0"; sha256="1awrjw0fhypxlz7s4lj0fvhmj0av8xgh191zz5imqvimfzjvf985"; depends=[]; }; - scanMiRData = derive2 { name="scanMiRData"; version="1.2.0"; sha256="06d91vwbirp75f5aaflny7ngfhnz834a1750vah2x1jwikd427zg"; depends=[scanMiR]; }; - scpdata = derive2 { name="scpdata"; version="1.4.0"; sha256="0rxrsay1ifzwkd32jjfa91phnjvndk136w5is01rx1hzibpv1x7j"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.28.0"; sha256="0ay0gzjl6j4aqaq7cybqw0cv3xfxhg83psib3z0m438gs2in1011"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.32.0"; sha256="0khf5mjl9slfvba6x876j8d2ngijwxfm8k2d01fj9sh3hdbi7y8n"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.30.0"; sha256="1x9cs6sfzwnppkb80n1vgy3lj85bk7c81994r3c12sna5sil8df7"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.32.0"; sha256="18mbg1n6c38qcz4r5n83x2796hb0wqhzqv997nlvjmxrzb53sh9z"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.14.0"; sha256="1c9bcrah4vz2035px6yv8djqrmpnn7i6y01pgy1hqlwsn24px3nf"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.32.0"; sha256="0axbgyn0cqhfq7mqivawpd0q268r2njm3igv6hjqcvvp2s7gzffn"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.16.0"; sha256="1ww9abjsqyyprz5706d4ny3i42a0czrdmxjaq3wlryiqgn54jrl3"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.10.0"; sha256="1wq9pk2g4zriijrlc6bqizi4rvmag3m0nrnml3qhqhn1jcc065g3"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.32.0"; sha256="07jscl1yd3dix0igsxw1fsyhsgqhqf0la6p6958jypy2chih4wp8"; depends=[]; }; - spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.2.0"; sha256="126agbyablnn3b2gh4fkvlqf1mm1krvk01bxl0x41f6l4dm5gj6a"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.8.11"; sha256="0yk749566rcvcw415s8ix185jf1vvmip2079mf81kjr8jsmlmz4c"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.8.0"; sha256="190jkvra5zsml0hxmw96nxg3fz5cnq6apcxcqsncq9raz30w8qqq"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.32.0"; sha256="0rfnka092sd0qb6vs7yawwkjw763rdaayyr7bv4618qqx2i6kllz"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.36.0"; sha256="0a7qrs9r76zlzd6kmfid8wzvv3k47y3w95ydqphd5pic9c6r56a3"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.34.0"; sha256="15lndkk8cgk5sy2ddc7g98nnjcd89j5a7c8kxz7jvd0j2vq1g0ga"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.0.1"; sha256="1g5641hkx2di7j2kgd13v1zih4ddm9wljrzi7swr0dxb01vqvckh"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; - tartare = derive2 { name="tartare"; version="1.10.0"; sha256="1857nmpd64zlbk0i7jk7ql04kkmyznr355jd3zml44x2zbip96mg"; depends=[AnnotationHub ExperimentHub]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.6.0"; sha256="0f2m6d4q6ayk6sqz3d4gnh4w9c5z91m4j8pjfi1932q4a86smhr5"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.34.0"; sha256="01kb0papl4rac44bc4rmjmjx424xb00rw3dvnc78qzz03cx90xq4"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.34.0"; sha256="0cadrq4aklyzy3sflnpwy8n4r7pkmb3mn0n1y0yqpljlqbdd9g8l"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.16.0"; sha256="14hiv2d3z502j334342ab0rqf1qwapf2g56ipbwm4jdw2yz2aqbd"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.24.0"; sha256="1gykmyv9lyylpha5a2fh2n0dhmd70mnhr502m0kimwg5hr2z1w8z"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.18.0"; sha256="0d0532jc8lpqh99yqygl4mxg7al4a74mdm8j45a36qa4q53m4xpf"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.2.0"; sha256="0b9286bcb4c4ygalrp2la1s48rq7csz83l2svgbx9da6jdc32n65"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.34.0"; sha256="0wnplck86wsc8d86cvk2a6w21s809cpvzdj1y17x1p5f9f0zkra7"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.24.0"; sha256="0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.18.0"; sha256="1y5gjk6l97bdyk1pm9c2yqszcykd0pdmc81sn7g4m0x81mhd81c6"; depends=[]; }; - xcoredata = derive2 { name="xcoredata"; version="1.0.0"; sha256="0qwg720yhjkmdhh6i5g4pwwf2pfjbxj74nb9n20sypzc673dab9z"; depends=[ExperimentHub]; }; - yeastCC = derive2 { name="yeastCC"; version="1.36.0"; sha256="1mpfsn9iyw37yxipdczj15hnxyvdrcn5sr2xvqlxj7csyfp2kxw9"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.42.0"; sha256="0sg4lr09s0iw99j7j7fq9xfaidnfxc4n0jjgnhghpdcqymm8ns82"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.34.0"; sha256="0bbqj899cr6d1nkf80bcbksnp4689kp38hg74gwvbj8ln7v0f7mk"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.32.0"; sha256="0rb3mf94g5px7xk7r25xjgx9hiawjlkv9zsqf6n2z2gnglfplic1"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.34.0"; sha256="0167p4g10ixbmnjyh08yz8dsai6d1ifr8ms5vd6jgmfwddznk8mi"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.16.0"; sha256="0nsdm0fvqjak54rg2f2jsn3l0a1y53mzb7pm2f7p0x75a7ays9p5"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.40.0"; sha256="1klf604g4m0g6y12swqz9f8gc20k0c79sxzj7zk6v4jadi1fhsqw"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.38.0"; sha256="1r6ny7v9q4h6gx7i28rp9w7a120ln9kd77a4ygiiy92s9d5qi6xn"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.34.0"; sha256="1c48gfb5h0chfs205hgl5gfb1rlsz355cv5xq0acj9cvzwv25sh6"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.18.0"; sha256="0s2zfa42yfx5mcbngp979fca6afszxgflrzhn7spry4y071xvkvb"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.34.0"; sha256="1bkzak8pwdz23isrfvw71y3y0jbmy11v50wg4z4xhwp0fhfk21fw"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.32.0"; sha256="1vvcia75d4n29kph83pi0ihrkjfl2jb46qvwzrhjyccxp1l16bvc"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.36.0"; sha256="03dsz3wzxrxykq4km8787n6082i1r140s4afw6r3m29yfk02rqfy"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.36.0"; sha256="15dddf2kzcdpvmskszsyxb9i613632d0dfjfv01mlbmvd4q0h20s"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.36.0"; sha256="125firpilbi9xlb61cp641g972cwqd23p9vrpczicjw6dm6mh5km"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.38.0"; sha256="0v2r91h6ydzyrcn4ryhrd5q0p5dlq6w1alcfbbk43nvmjqidm2r3"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.26.0"; sha256="01g4g0sz46psi86792fqyazr6vzbcrcrhzw2k9k94cawppnlfnwh"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.28.0"; sha256="109qzyjhvmpm0q6ghfvsmrrskvjd6djlki7kn63jfsfqphx1v7db"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.16.0"; sha256="092f1nivs9xvibbs380ahwfx3f7msnbbb62bj94ihs2swsq7b1y8"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.36.0"; sha256="079qj26622s9jb2kw1wpd5bjihmj3a9mif4y86zjna7jm1jdvzv8"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.6.0"; sha256="0mh10sg95djkzp9w7bjr4ggy86a0pakfi2008fk4xikjc3q7ky24"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.6.0"; sha256="0r4m5qchzglpx4dn95ss0xfd3cqd7vxafjg869y8fxpayjn11dqg"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BioPlex = derive2 { name="BioPlex"; version="1.4.2"; sha256="091d9gywkkbgd922sgqqqnj20sjnrsarqrhqbw99x9ccnfzqr2jn"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.18.0"; sha256="1284qhij9663b382aq4nq3zl3jjsj5gdh3bfqj6sjfvbvx4pmcpg"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.36.0"; sha256="09zja5jzz7lh11cyjvczfgic8z4bq35j6f63irwwizxvp861w902"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.38.0"; sha256="109sspddzqg08gqf5xacf2vbjs672i2d3n6a6wzr8isdyar40xx1"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.18.0"; sha256="0xagl4f5cn9wax4jjh4csfd4p53ljnh09b063rk8dqm7adr2c788"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.34.0"; sha256="0fps1b4kfhv4n1gm3yqspjbrh6gnq8hl1q2apzb1ir1gnfm28ird"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.26.0"; sha256="03dyzdj79377srmcxh3fc0z321g3mkcp88lknwndw1xa44n2hqd5"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.34.0"; sha256="05m5288ilcisifnhkq6vdgrchhkp21nc8kmdm7kdszl9d4xrj7mq"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.34.0"; sha256="0ga0islkm9m4qry37qkw8z0zs7amqky7fy0i418k9gn0ba06xd0s"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.18.0"; sha256="0515xmrbhvkw8zk62ivyzlr8p0mmmqbayy73vdwzz3a5gd3zh7zl"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.30.0"; sha256="17hwxp251ghwmlywa7rxvlj0m3fqdf3pm57m0rfxnda0izx6xvk2"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.24.0"; sha256="192jaz5fss0bz64jn52c7lnj81ih89dhrz6pjkyllsh8ffvqb067"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.30.0"; sha256="0rz762szfl02h4d3dj7ckd41ji9mdsja8nxqw6fl086z337041zw"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.18.0"; sha256="1ii43y280mqb0csa3g7xrw3aj1lsl4rk1hnakg27jnjk7c36jg0c"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.36.0"; sha256="049y1mvf7d1ajqnk1hs72ak41j16dz2zhsmq3b6817a4frrnmb0a"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.22.0"; sha256="1jgvf953b3pmkri02avajmqx7p0ylljdl4v2qiwvxi0gxzlb2qwn"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.36.0"; sha256="1jlm1l5vkk18r0y5jk0rz8a30f71cpzq5wimff4xnka30zkk83r9"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.14.0"; sha256="0qnhs5kvf9a1vsg1y4ky6cb0awnf9fj6n4n37yz9ss7dl3rpn3qk"; depends=[]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.34.0"; sha256="0f7spc4l9y8hrv6fscgxj9fy9hnqm9h8r4nya97jzbwryj9yzm2s"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.16.0"; sha256="0s3fp0pblwpf8g1ply64n9kq41mn59gyf1wh9lncks8sfxdk1h0a"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.30.0"; sha256="19yqcvfji8263wdcqmjbmmz2xzi0nl9d4jdwsqrvv6ja5pqm2l7w"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.28.0"; sha256="0ix3z12g2xff16bkiynly8y75ygrapv65p1ml9z7p4ap04rd718v"; depends=[MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.6.0"; sha256="16k017y3bf0z3h05gldb611hl10vqllyl5346nnpmw8pqihcq5by"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.38.0"; sha256="1adzmfk67xl3lqlhkbb6r2kkprkbjwb6n77ynj4mx6gi4b3s8b2n"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.16.0"; sha256="1p67kw8l8367rkn72wjlsdc4gw1cbpi8w928dmpa1x833ypfpkc6"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.34.0"; sha256="0zk9z0bmn15wsrscdh30cxps1c5qi06xhzbvl8v2lals6hxqgixz"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.30.0"; sha256="1isn7ay22dpvnsdjlmanfj7pdqnim4dcrq2rf8dflydgjq6hc06k"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.36.0"; sha256="1xq303q0wmrk73band29yfpb8dacg6187qxpr3pqacksj3dsp70m"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.8.0"; sha256="1yzq3yddqv06j1j3wpw92ydsgi2k67dirvjn7127iwpp865hs12r"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.34.0"; sha256="1j8mnkk71w2wp18wp65z2rwj4ql5s6pqggv2rd02l0jq9n89w8wl"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.16.0"; sha256="0dha80wlb9w1brq22lfmcm267axkm56pwfxcd1szbsg3w2fv3wrn"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.34.0"; sha256="1x22s36aq8ppyphc58gsd5s7chkkkf6dhand39c8b9npybx9rx8d"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.26.0"; sha256="0df556k4wbwmn8cjpfq38c3mxicncz2j4f9f7xxsj5gjd2ww2p2r"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.22.0"; sha256="1603g55jkdq3f66xp84cj7x3f7bgw2s4bhscyjvb1hagcnwg48lf"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.36.0"; sha256="1bpm8ds36iydbd4nv5ifrp8spdlx21k14dx18awm61d9wzg6fk1p"; depends=[GenomicRanges rtracklayer ShortRead]; }; + EpiMix_data = derive2 { name="EpiMix.data"; version="1.0.0"; sha256="1n65fyq8syiaix876ll1zjjx5cm9k63p92x9by6xbpv1xqmqbpzz"; depends=[ExperimentHub]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.34.0"; sha256="06fqm4rj5c6l1aynvz3xqv9lk8w1s57m9ncfb2729sgyp7zg64pp"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.26.0"; sha256="13f8q3gjgbbycp6g81jr5aq5w759mhs4niacqbzmfa5bksvsmlmn"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.8.0"; sha256="0bcsvgjr03z5r2xxlzrzcpqw0vqh0vfghrwlsismxp8dp46kjr25"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.34.0"; sha256="1dgqhgmzhfnwyjr1wcz41ggri8i63d9b4malr1izd8gnh9c80an3"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.34.0"; sha256="1hhsyk98q23j2d5y4l4kj15vypms9yn7skw3wcxmwl95cgdwzb9s"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.36.0"; sha256="1ha9qsp5g3g2yhnk574x6xhg95bb29ywvmg3ns1c50z69v6wbraq"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.2.0"; sha256="1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.26.0"; sha256="08wyfv2z8xcmany5m9lpz3lv7ql4qq95vb14fvq7bmhy1ahbr9by"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.14.0"; sha256="062dk56shf41qdd4wm8g8vgbcg1bpj24v9x7q4kvb2cmcqyr233s"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.24.0"; sha256="0c6v5cxw3xy0zlw3dlfx5gwijlkwmq4m2irg04j9fng90zm2kmh2"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.34.0"; sha256="0nchavb8jwkp7jpf5nkfdzavjqjsr7d9g3cll7w2zczgz00ysfij"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.16.0"; sha256="0ryrsmjsvv02p9zrcw6h45c8hrq6pvg3r18j3jbcsz069awsy9ik"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.18.0"; sha256="0n1ag0a34hfrfrnnzdd6n2dk05hxrpgr9mfnxlnyffcn36fv7fwv"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.4.0"; sha256="148p24hh7j07ny2jxwnvk5lq6313xmaqmn80amv1qvf78wfnf3bf"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.6.0"; sha256="1r3w675f53n0z6ii6xlsahyg33mc0zmcsirgp2nb4ab6r22y36sa"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.4.0"; sha256="125q8bl3qaf8lnadqh96g651y8ydkcsg8szcni1rjsnw6hhqasxm"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.26.0"; sha256="1d3zyyir01i4isqbk1sjy1d0jkrjqiyciyqqklhigk1jyk4irpvj"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.34.0"; sha256="009y1ywfb11d9yrqnknjgynpm732fixrg8xk49ggf1m0r8qd7p0k"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.36.0"; sha256="0nibj1n8gqzrrfpggryfl80zk68hf3a3n4ndjqi9rnn5kl9aw5b6"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.6.0"; sha256="1ascrsvildfcp4kqzy9zdx97dyqkdl8nhkv356sqy6scd4fdjknf"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.26.0"; sha256="0mkzaqsqqyn9d4z3cgr10csimqklxqvymsjphn05m8d5dhfzcwn7"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.14.0"; sha256="14734jlxq0l3l3187frw40qfsgx7cv04hxl772wvaahnd8wmga9z"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.38.0"; sha256="0i2sv80qw3svk8kl8yrg4n6mxjw589fz0kpqn9hbaj07z57g7rb5"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.18.0"; sha256="1fn8q6ds10z3ymdarkfyh88pcqnrry9yhzammp84vf86f0bl8mrc"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.36.0"; sha256="1jm0i9d6vwbhp7xxy571n0c4gc8zga0vividkkk5wkr3mzc00qm6"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.38.0"; sha256="0yf0xwkjhb6inxpxy2r258zkqmx286v7d0hcrp9s2jy1jxsvzyrg"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.18.0"; sha256="1zp5s3c95nkq4ngm6v96wah4h1y47pgwxpg1x8w0ysjiswjag74f"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.12.0"; sha256="1m57kd35m7j8jvai5lh252433s14fn181vpm4bz38wqh4dj41qhs"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.18.0"; sha256="0ir4vd88p0pfh4sbsks65dijxadxj2xdc5rrjznvchj39ia48lp9"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.26.0"; sha256="17gl8j02gnninbq386b7jmbnai77hg3w78lvikcm1450mlk1vkk3"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.20.0"; sha256="07gh5gfzprdvv0cif999k2v8rijhjqsyw6yrmn6mf2hyf7hc09r1"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.24.0"; sha256="01mdjz9l6fnzd4yz31xyhraqczd64dsay37pqmc1w9kd9934sfrm"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.18.0"; sha256="0l9v1hycb47cjmk1k1b8vvry7amqgl74l72qigznx9h64dl0vqpc"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.34.0"; sha256="1il9j759bw6h84v9ap1wf5fvn4i34nhdn0rb9flls1xbrmi1bsl6"; depends=[]; }; + HiContactsData = derive2 { name="HiContactsData"; version="1.0.0"; sha256="1hp46qr1abllmqqimgk8lp2fb7mfb9zc9kqcfzc8fx7jbyxsqj7q"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.10.0"; sha256="1v6qd15k36ynmy45kd5rg7rfs9xp054jgbwksxc0hz3v50nqjl6w"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.34.0"; sha256="0a87ldx5hwlvk64ynd4jm0mf3sbn2yxq2d87c9gwpcc471jglqn6"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.24.0"; sha256="0sbxl4jh697220888ssi825iiakzj94m4k871lg42xn22d7991wc"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.26.0"; sha256="01p50lcybzr8bk7hdzmi71bwwy51xan5wba2ppis6z68gjvyn4hf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.36.0"; sha256="09d2igic3b5p7wpq98hb2lffxm1nfq9mwmnqlbdn3jv49pgz3hmw"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.34.0"; sha256="1c1iqxi17s1a1sa1vab2ma7pjq1dxal7ibsiahj66ys0pa4sm42p"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.36.0"; sha256="0xsnp9bxsmsrqnlshd0g8smqmianlna8vapln96ix47mjj0hcq9c"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.40.0"; sha256="0y8a5rsnk0m6x4sfp8fnc7c54fv3pwsps19h4hfs0qxzvxzzjrf3"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.34.0"; sha256="0g95w9fk7rjn39xqcpyxx87mzizrkmpmrh76msgkmwpmdvjz6hkh"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.26.0"; sha256="1y60fslisdxwm27g0sjzjg6r5qf8bjp4hyb1k2plxpdarvl7jzqf"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.18.0"; sha256="0x582iygpw580i8afdxw41jn7gv6mp0hcy9mx8n75nkknvzs4w0g"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.36.0"; sha256="09syk5d39blzzi1z8l8w1ia8ahrxhrwync7kmlwnvssbd5q1q0rd"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.24.0"; sha256="1kclj56823bc9mn8r3khwfwak342ja69afcmllfg2cfr4al6ikgh"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.6.0"; sha256="0r0p7v482d9r06cwgqy23la238dff9ga70iap7wyhn8xdfcp7rfm"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.36.0"; sha256="03vgrpgw3sqfrvbgm7r6avwkl85qmxl4fy0r92ikh8wr6waw7a62"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.30.0"; sha256="1733sz2qhkrvalx0vk7xa2plddz40psfmnfpq3zkf6v4i1cvnvmx"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.34.0"; sha256="10fbjpk50nqpm91r9fw94q8dqcz1jg4smbjjx2nbwvl1qzzr1qpj"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.36.0"; sha256="053zb04n45mypnaws2g4id6pzlbmgdzwrg7x3i6gcw566vdai82n"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.24.0"; sha256="0cmgb0qx78awjx6gcf5nyd7am0p86ga9l7ps8h8z9llr0d0yr0hc"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.6.0"; sha256="04pimm8g4m2mahrpdwc45l1cnsg8h0737qh932k9g9740pmhv1pd"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.36.0"; sha256="0k40plz86v4bwcwny0zd3icq4zjqfglbnrk957bvbsgacjag87cq"; depends=[affy Biobase lumi]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.36.0"; sha256="1vr0avq39p8hg5zzx6fy1n9p4anvlcjbngkhiq6nprmp2s8064vg"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.34.0"; sha256="1h9dhirmq30j9jds21f1a3jvijy9z0mp9j08phd79sallkcvsqna"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.36.0"; sha256="0klm6xv25g3x7yf814l1jbi16cknb2xbh6yn1cx9a0p3rgm49j1l"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.22.0"; sha256="01sz73h1xkqck6d0yliy2i4nx0v980bxm30y7rn6g3nxw9qs5q1m"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.12.0"; sha256="1k5ay043ys2npmmb2mk01cpdxvl1ccysl5bw5aj9d2h7mixxfc27"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.34.0"; sha256="0hnvjsbj6iaaaqslgfnqzlk59q6fmyzsjbscqvl2pfdiliy2mkix"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.14.0"; sha256="141rvb3ra457hgc8hhskc4j6xl6k7f13amrlrw5nvx4n77wfsv8b"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.16.0"; sha256="0rz9cvpsnq0lnbahnpsbdxwcvh6z7id3lrzcr2bcxvnkj4ah95q4"; depends=[tibble]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.18.0"; sha256="1f2zsy950rn437cgqpai5nlchpza100sf2acqdq8cyqiq4ip7q8j"; depends=[]; }; + MerfishData = derive2 { name="MerfishData"; version="1.0.0"; sha256="0jcq6n0x57i11c793alj3kj813vs37fmi01z5yl1lsx41cgflpll"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SpatialExperiment SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.18.0"; sha256="0wjgk3j9r6shk7ava3isdyiihdf7b9dz701jkv3nhg87x3nhvwfh"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.18.0"; sha256="0miznxb2d7smfzcyddhx64lip9xxn4bcq7x2f9fn9047qfky0w9i"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.18.0"; sha256="1icm9y4x2qglp9gy66j71ngn61snbxy3gz3m6mdgj2vw02f93xif"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.30.0"; sha256="0j53ilxqvl7gaplkmrslz1ywm3fybqyri2psdr5c34kay7j50sng"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.8.0"; sha256="0rfl5xz23kbvjxf2sf25j526a8252dvd6zmg4x9pj7fqyf7yvfdd"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.0.0"; sha256="06m0yi3379g8kvhs0amcc9r5d0np9xwq2a85vk8iz3xi6sqbbbzj"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.12.0"; sha256="0icgs53mfaiary8gjifasjalc9942fr876w61bxssdg7v4jn76ss"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.6.0"; sha256="0y5xibhd5w37ks3fvn6gsgqd5whxvg1rbd4li2ank0v56mvazfij"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.34.0"; sha256="0sismlawhq1dz29v1532x5ha1n2pdv2fa43kzma4xdf1vafj5ham"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.18.0"; sha256="1w3hpmqf6030smwb4r61czwz0qsr2kz8z11q8z8819bj0czvr32x"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.8.0"; sha256="0k548ib7yi29xcs2c0y46c3vwi6fkqsp3njwbn4acm85pr93z54g"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.14.0"; sha256="0qk0c506j2gwp25hyqriii7cwh1h2rbvhahm1akxvr4j1v2pk01l"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + NetActivityData = derive2 { name="NetActivityData"; version="1.0.0"; sha256="12h25q7vp23rac1d3lgf99fclj2h3615bkxfhy117971i4n2z4i4"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.36.0"; sha256="0i7l60ys7mnqllx30r6g8jif460z90j8cw59jv13hbym5dhdk4bi"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.4.0"; sha256="1k0krkmp13l9w6jwidc1snm5z11g3wgw2pmp9jzsxyxjimha0vh2"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.16.0"; sha256="16jyvgj9rcinsjixczwq6rw8wpl0lxyf7h5sajf47306nxx5w073"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.6.0"; sha256="04hcr5ng7gqz6200zvdkfgrw1j3zkvqqh6yn5zsf9q2vwxibxyz5"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.20.0"; sha256="1338j9fqcizrfnx7wi97qpsa14yyzy34hb11q3017ry1hkhy28qd"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.26.0"; sha256="10nlrqsxv655d489fy1vchgi4iw3pfxr6xwhylgcj94nigfy632y"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.38.0"; sha256="1wmvx2vp8yfz4mx4gmcgvisxp5cn0cf3pznxh01gwiaydpafiskr"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.32.0"; sha256="1bikxs5h6wl8l3l6avgh42h3d8yz1b98s15fggl62gkncaygqfr7"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.32.0"; sha256="0ckvjrzr7hqr7lls7z8pdg58k0xpm7hnk8dl2vfy03ddgl7ma34v"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.32.0"; sha256="1hwlwkmvkf9q3vi9c7ipr3h6hfrda5xm6gbzv03bmc3pcwwqa2j9"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.26.0"; sha256="0mhb68rm3dmzdpm7x0ffyz9a44fidgr1gxpnwxppslklrnm7g24q"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.34.0"; sha256="131d10id8b93hd7g0z3rl4z8cvv5h5gdi3x636b2z2is821jvnbr"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.16.0"; sha256="13n9calm3k480sxcgqhvw519m1ss51ysiin7cxhipjfjf8fdnbkb"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.12.0"; sha256="1kpg1a2p6cb4xa7ynlr3wmx7hx1l2xhxccbyqd8mnwn0r52njwmw"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.36.0"; sha256="06bmlgwyw4m7cirlvhvsl9qhmczv8rv0aj5ckickwzdcxyig9bjw"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.24.0"; sha256="076q31wxfrxbgyhp4m0d7rxfpi3vvh9950lhcadf92mz6rc39hi0"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.28.0"; sha256="0mszcm31wvzz4sd9909x3ngbd0gdg7iyyxqwmn6ish8f3aj7b5zg"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.28.0"; sha256="19i559hx0lbn3m0ihx4wxl8zwskbfwhyzywl8aan165f7snj8has"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.26.0"; sha256="1ibffdqc2szj48g6a9ysqwr499bfx706ki0436jwcyxgql2rwbi3"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.18.0"; sha256="0jsmqibzlclxg4sa73wk63z9l798g1hjl1amjpjy1xb1mn585bhc"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.22.0"; sha256="0wx5i8i5aq6zqrr134fl42a0a97zgrjkmwqh3n2ds5bdn5iylk4g"; depends=[]; }; + RLHub = derive2 { name="RLHub"; version="1.4.0"; sha256="1gdlg3sfpf2dpkxiaq0m2mmkpyj7v3jqb9paq6ii89l0df2rmrlb"; depends=[AnnotationHub ExperimentHub]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.36.0"; sha256="0hkg0w2d8r2r661a7jrpki79ycxnibqwghra4aql9dxqvwrz5qxi"; depends=[]; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.36.0"; sha256="1fpcaqvffb4qrcqs1flvhjggycdxcy93jbj3x5196kz4h9i23fvk"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.12.0"; sha256="1qb753pa6vz4m98s5bqjan70ygqdg4v8jkz440hdq20m2fl54k8w"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.36.0"; sha256="1w1af68xbpwqmpvvsd1i7jhs4vpxsbn3x277dgg7lgf9gwzsac50"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.18.0"; sha256="02j98pnn8pprrx7y1038w5gzb9cw2wf96vryjp17w92k5shv0v5j"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.26.0"; sha256="0va9ijh2f10c24z0am0rhsdxy0s35cmbsyxfrsysdn56vlz4hprl"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.26.0"; sha256="0ha4pz9a85jm74yhp5hylgcs3xkcv81b3h5svcrpzwgz4bb34cny"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.26.0"; sha256="1h0438li369ziwdjvdvyzfnsxrp8sf28xxkxywivy8ihkcq28pxy"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.28.0"; sha256="03qp4h7vks5dra741f795i5pjryh5x2313xx7zy7fz996sd1q7q7"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.26.0"; sha256="1srd8aswa4sgm9k1w0ymd7vcvwlkhb8i075yyh7zs4a4w1jwavh4"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.26.0"; sha256="0ncgzr3z0yi613ryz2w8lgmyrkzigzfgc6w6jrdgxik3yvkl6b13"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.26.0"; sha256="0rslg5pmnk5dllvahfjrira8mxg7pfaimnqci3jsi78qqb7wdgfi"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.28.0"; sha256="089zy9bmwmwmihldgcw423sngjwq0vrx7bazrm3xl2psvcfday0g"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.28.0"; sha256="0q5k6g944xzlhivwzni7azw44rvahz7hgc9bkbbx17dpgz0nkl6y"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.18.0"; sha256="0l7cv7za7jknwa3jw3110jba31hmsf5wf0sys5kbg1jgkvv0g7ci"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.18.0"; sha256="1qld3cm8qhfxh7p5j0g2iq6i1bxcyhs88222sqyjqjl6i0z01wdf"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.12.0"; sha256="1vm6s3n4v4ar3znlg4qlsllddp24wamz53qnmf6ay09wq0wyy9yv"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.16.0"; sha256="04qrk7x5b3g4r2j63w0cc2qbxqcljfkjv4qrdg0qmbn3p4gi5nqv"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.35.1"; sha256="1igdx4idgk1j0mcs8zjzd6bppj4nadryxhw2q026hazx6kj5qbxh"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.30.0"; sha256="00aymammhqndzwfrb1c9lkpzsia20jqx7pysl3s80nbxga7rc2nj"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.30.0"; sha256="0fayz3kp02lshc42r27jwa7qd8yq6qb5g0kp1lbak062l8mzzjdp"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.6.0"; sha256="0wd55fkdjl1kdchadkd6npz7fmpbacs8mz9phnw7l12nn2qd4mdn"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.30.0"; sha256="17s3dpwhdv24fzk1x7ppyj63rg4rajz564dqplga9445rjb00dzd"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.30.0"; sha256="149i8l5fv0c2z467bacq8lr7ff5jibd2zxxw1p7icbq4k31bcap9"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.30.0"; sha256="07zpwv4s8idgmjy87bpvjq0f0zvgmra7g31kghilslxiq5ywydw8"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.12.0"; sha256="1a541w5xik81ln571dg3r4iiwprk4xzl95diqqxq2qyivvj6v66w"; depends=[bookdown knitr rmarkdown]; }; + SCATEData = derive2 { name="SCATEData"; version="1.8.0"; sha256="05q33yxj99g0xbha3a7qibpcp33y98p6242lsl3my6p48fby7rh7"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.30.0"; sha256="0969p97x5w7vwaq51bjcdclz40k9yphlr66l92rnvcl3wqbvrs0i"; depends=[]; }; + SFEData = derive2 { name="SFEData"; version="1.0.2"; sha256="1kan3yii88rz9bb3rqgrcvc30pkvrjywhwfax7q51rsz71wvb52i"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + SNAData = derive2 { name="SNAData"; version="1.44.0"; sha256="133d7ky4sv7msyxxqja6rnf66c1yphx7zh0xzjf6gni4r09a7jp9"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.34.0"; sha256="02an8d31yd7ryvpy2ldlf52gsyql1waz0qh8d3xsx96p9cg9il2y"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.28.0"; sha256="0668whnkan61jxxi9iykaz1ny0929vnbhb27p7qngc5m92l1zja9"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.6.0"; sha256="0mmc41px0yz7mij6gdnjcf8vifwk8p03jy7b5lvylfggbfng579z"; depends=[ExperimentHub SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.30.0"; sha256="1rjkm6sdhwn4nhswqv5jhlqz4002grslz97lcp5k9i5bsl9yy5lf"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.6.0"; sha256="0jb82fb9mqiqh9b4nn2cryylzgk5g9yibcyin8wydmv4sk8xxm5w"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.26.0"; sha256="1r4sal6cv91lp4sjxqqg291x1jv16iq0wi34wm0r0mjnfycw6x6n"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.10.0"; sha256="0mjy130147sg1jp45niydrsinnxn6i9v4jjmlanwyf1kghl4hx7y"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.6.0"; sha256="0mq5y03yzpxdhhlws9y3g9mz0kr3q3g38a566cvp18mmhxp3414k"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.36.0"; sha256="1sshapw93rbiqn9i3rg3xls7836hvg87qsl7awp17gzqlqap4331"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.34.0"; sha256="1zahhn2b10187hbljp9nppvr94iz067yasfgxalkhkxl09pdpksx"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.40.0"; sha256="0r0lgzr0wrfvhl4fs4w5qcj0ykmngfrn341jgrxh13wn1cdk9yk9"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.38.0"; sha256="0546mwyacdhcgglfgqkq2c02nzvq1a8pkybggnlvyz1bhrrg51ay"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.34.0"; sha256="0na9f3i33h33xpbybgmxwf00mdvyvmgyfvpbj813wcrlp0m2zzhm"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.34.0"; sha256="19y43lxmzhly8q3xszlkz7l5v76agyflcjvz0z7bliri1hpxx6bk"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.22.0"; sha256="02w9blh9igpflvjmfcxmnw5czjjlmh92ks1y0jhx72fz5g13mq3a"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.18.0"; sha256="0q1h4z1x47x5y618j4z2zp4lfhm85s0240nmzi8l8129sqfmb9m5"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.18.0"; sha256="14qxsi6mn83c02mhvzs2qss59a8ld1vc94kmy03c9l3p5jcb9352"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.18.0"; sha256="0fx3vxyc89gr2k3wnx5wlqxi6ml45hyijwbf5f7crijzh6avwhbh"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.12.0"; sha256="0zqsnw0ppmh8f6x8j8ldpfza9308lspasgzbm1qw3cqa5sf2620w"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.18.0"; sha256="1mk1vjqqnpc83x5m0js3j59vxi43yp4wrzj6yrrx7rn10xz26x03"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.16.0"; sha256="0551izai1apxs4xz9rd0f12dpbjk2qr0sz8bb69h4rxrbp2jg7r6"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.6.0"; sha256="0z31bqcw2mjqx1vv34z55zcy2s2xnzj1h53j4nmxbwfncj40b9sm"; depends=[ExperimentHub SpatialExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.8.0"; sha256="13prp9ksh3k5w84bbvk731fda1psb45mi56dwd9n958rj27mwkgb"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.16.0"; sha256="0yy9bl3qqcyp8pw4afx90nn0z1zw070qhanwdlim0c4fg5p6g02l"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.4.0"; sha256="1xmim64br8zx57l50ip7sbyjfdwhlr8j29gzf00i610dmksb2sii"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.34.0"; sha256="0n7lr3qvppy9pbvff66mk5dc9399afac7f3kn3xkfzpcfjc27b1z"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.36.0"; sha256="0dwsq9cclzxp7f6lhg22cs62gm60pgwx0w9z3h13zvign43ha8r1"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.28.0"; sha256="0b2vh4xcns8ypmjig42zggws7pffclic57sl7w1cdmynpmn4jr33"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.22.0"; sha256="13hgmciikp246nwp0wk4528fad4ccmc587x8s45zg9ybi3ya00iw"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.2.0"; sha256="0gl92bypw6axdwj83dxmvib7p72dl1n5vqfrsy398fahx24djwln"; depends=[ExperimentHub SpatialExperiment]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.30.0"; sha256="0yi72kdihvrxf7w72fn24bs5r89pg10kc9myl8n4nmf2iiplcn0c"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.10.0"; sha256="0lgfmpmnwpmrg05nz8vxlkz3jwy6gkd74fl7a2f81bh2lrs4bgh1"; depends=[GenomicRanges]; }; + WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.0.0"; sha256="1zqc26n7945b024ln82yqp5zpsmb7d5bi8zgj8hqnm09bna3qiil"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.36.0"; sha256="1r09wr45vjcr7yxxfi5l132bqg380bicdlz699961hbinvyg7pgc"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.14.0"; sha256="0yfgjvq7qk5gvdjhrh2lyz77c6jd438ykd2mpfm6643zr2bkxp4g"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.36.0"; sha256="0qcjlm2i0z8z6ab7dknwl1pdmxv69hyfpj61lhygn8ks02al12kn"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.46.0"; sha256="1k2npkq41ik7c1cniz22vm9970ylrc3cjfr38iy5x5zmh8i35ypn"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.18.0"; sha256="0l706h1flvv4zz82w3qyj73g28cw094vsx4iq7ahhh0vyyxg9bjx"; depends=[SummarizedExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.24.0"; sha256="00r7ks6rgiwhqsayhv6l9z7i65jxgdvlj73r2mx6c04fg0nqp3y8"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.34.0"; sha256="0kxya21ycp8fwkqbiziggf3k5y2d344qr1bk0yvncgjf7qvydfrb"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.24.0"; sha256="1hynz34hjc49vb2di23zs921p2k0cy3b923s20g7ajfz827cpjsd"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.34.0"; sha256="1fpgh70x2r68v0ximgcdphnyzq2hgiwbamyhbac3yka8flhrd1fm"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.36.0"; sha256="15fmqxlp28j4mrbkg9fjk35ki8s15xn9kbh928cni2722b5pvxml"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.12.0"; sha256="1zhxd4y7d4j34cpvrhidz2rqd4n7ngj7wpk1klpfn3kdrsm7s4my"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.36.0"; sha256="13g2n1nywj5pd1pvhvwqqyc8q7vzxnlm9345ivfk0vnvafdvadmr"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.22.0"; sha256="0vizblf5sv5mj9j5w3wy48pv75c97bf4lcxd0fsz73lcfz446ja4"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.12.0"; sha256="0a2sk4f7lxllja3pbawd5apkcvlh2flw6xa69vn71860fi9k831v"; depends=[AnnotationHub curl ExperimentHub]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.36.0"; sha256="13zgwh3g6iy4pdq8w5wx5nmzh4ypc17d6apm9c1mv3y4xaya7i1h"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.18.0"; sha256="0wyvskjn3kfqlnfll36c86cb9gxj4vj194mvpy2p8mbmarhpb2qr"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.14.0"; sha256="1jfa3i1d1llhqqa5pxbj7raj09sw4j7ayclnr5325n49cblvrgln"; depends=[ExperimentHub SummarizedExperiment]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.16.0"; sha256="0f23i4ynb4vgn22c3d2l64z92rzv3qnwd4j8qyvalklrxkwilhfn"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.36.0"; sha256="0rfcycjl3jz3fgx7h46hi40gppq640c0mdyf6nh42zc34ml49cml"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.36.0"; sha256="11kv9bnbi1p8qlnyayqb7380mwx95a7cd5vljq3zmw74v6723h6k"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.36.0"; sha256="1z7p2fgbd80hqqrphw6kr3hasx4ybigd4ilw22i040b8c5zkilfw"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.36.0"; sha256="0rdjk0cl0shhfx3jr0cpnh9whhdcnbj6akhipc2c5sk2l7kagiz8"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.36.0"; sha256="19bzlxj106ww4ffkgd15fhq4idqvnwa5slbb4f65xf0nnpf11s19"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.36.0"; sha256="0kk048gs3ksg163hcscnb1ng3zswqg5mzzyy1jlb6q0rswh4f6zx"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.20.0"; sha256="0brjmgjcpx8ka1idxd4fm6aa1mgw1nbsa99di3j5n65k34dapzmi"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.36.0"; sha256="0vj61n1h52y1yhlf32pqvfz7zk77r02j7pxpd6aih8p7yhpna4f0"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.36.0"; sha256="15qii9mqm05p84m8m2w65rk2hayq354127j33f6dv8zfnyijr1sk"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.34.0"; sha256="10r4dbw76bzhqc2aclksib0nnyzsn59xwazaghq8cm0nbaidddf4"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.36.0"; sha256="01cmwqz3h8rbymgws6fsd5rdjiq0k8p9jyl31l5lqck53z1ngxfl"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.36.0"; sha256="0c76b68hasc8g452mc3q5w2d2xar8qp8hkpg0n98pyzlm5yddqzd"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.24.0"; sha256="1gag2w14qb2jialkgwapdkh8l0impa6ni621za9gz08yvgw0m8c3"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.16.0"; sha256="1kblk1dl6ysxlfqb0z5jqcffniafsl786mpvgqw6hjxnjya5vz28"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.8.0"; sha256="1nn87ig61cy87n7fjz45x13xl7ap1frd2i6pgp2y2wx0lj83hamb"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.22.0"; sha256="1rh329i39zc5ip6h7v5pdy8383ak0jdq27zvi2szci450sqrrmp1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.14.0"; sha256="06r2l4z26barr7fa0p7brpm5ds3c234vpbcd54g5chah57n2v420"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.24.0"; sha256="0hip3b4dkkcqvy8n5ac8m1r7qa0hr3apb5a7wm9zi11dyzyin0g0"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.8.0"; sha256="01p7qy2svm382v4ykfzndy562dlgrbzzzrf6rfnk6w1j5lhads1r"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.34.0"; sha256="0b08mq034w6xs64f9280ckvdz0g2r7glclpkpwmcw6rw73qi35w3"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.40.0"; sha256="0an3vhj7mbyyzpnpi078wcky8p83lr46dlj6079g13j0azpmf7cr"; depends=[Biobase]; }; + crisprScoreData = derive2 { name="crisprScoreData"; version="1.2.0"; sha256="0b0vkcd30m56cnk1rsincigs66yh5pvlmpzl61hz1iyhc7367bqn"; depends=[AnnotationHub ExperimentHub]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.10.0"; sha256="07xaaqrxnyvq0binjyxdn1wy523frynkbql2wzhbhafwq9x02xnj"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.14.0"; sha256="0rhcw4wy023g55586hz6zyvzlcb3cfmm0jp3rsa0iq8pbm2r9n6m"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.14.0"; sha256="0mq25yi91hm60ak3mws7wi49hvllirxfzz4kqjxxr493bkdllxkl"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.34.0"; sha256="1vp9w40v37xgjdsg8m0w7580h2i0xi823f34qik87mj1hr5xawsf"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.26.0"; sha256="02iflnwfpcmglj060w5zygqccii91n2s0vp9bkl1ppj6g409pxm3"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.30.0"; sha256="0hbc3d1sj1mfqszmfgkmhpnkbw4mdapp85s7bj2spmcwf0pcsr0n"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.6.0"; sha256="0ry9063nmcc5n289a2h7rpv7dgf25i3yk44nfsslfy73bvrdnz75"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.36.0"; sha256="09zb3m32a2rqwgs2x6g1ixvwnbx0100mb2m8rkbkdlfczlnq9riq"; depends=[affy BiocGenerics]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.4.0"; sha256="0ksb30h6hlksxzgp0dl1f09jr4a59zdll9jnla8xcsbqqvbkm4g7"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.20.0"; sha256="01q3bcspvff2syg5d933iqfxwl62axfy4xbzkwlg15as7bl7a54r"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.38.0"; sha256="1g8q0m03ss7nf2v3rk6db93mmbzy1kc960scs37pc3s9xdm7k9ak"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.12.0"; sha256="10y1s5v6c74ynq8m0rck41w16hglnr700c322k5p9yzndf86f3hv"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.16.0"; sha256="147bf7x90prw1x58gy6w13l02sf6zbn4888ikw817k9n5ja3f3x1"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.26.0"; sha256="0kdh2kd0wv324nzi1zwx765hj2fblp02lnyabmyc0xdvinv64vmy"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.30.0"; sha256="020v1l8h8xmxk0v5fnbvp769mks71wzdmkqjawjngd7v0jj9zclp"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.10.0"; sha256="05vkb5mash2m8p6njk842sy5pz7vblrm8n9bphqbslm86kld5n92"; depends=[bcellViper dplyr magrittr viper]; }; + dressCheck = derive2 { name="dressCheck"; version="0.36.0"; sha256="0yrnm6i36zrcjri8fispnlk29wbrj5p2ld716qbd3v7i7kh65v2f"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.38.0"; sha256="0f940198kz8i81s3j3sk5kiaradvk6f9g1w7y40kr92y67p0l438"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.4.0"; sha256="0w8g2b6d0c97m796nl09s7ls8wzs6ir7947maygi0a9qv20b2n0x"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.38.0"; sha256="1303yzp75n9ipvvp5avajcs45p0nz6hqisgl2h58baq9qqxgda6z"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.6.0"; sha256="182v17zcsfi1k6vmyjg6m9pdmfzg9ljvhdvydgr63zmjhdh3l4p2"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + epimutacionsData = derive2 { name="epimutacionsData"; version="1.2.0"; sha256="10ihas90rqkfagi95hhvpz6clpwlsclv2vx2sgy4v51mwk71hhps"; depends=[]; }; + estrogen = derive2 { name="estrogen"; version="1.44.0"; sha256="00mw9cvvh28yp3brdm3jyaal3vkkwis8gla4v30glpivb3nd13yq"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.26.0"; sha256="1cbyzvymznf9rsi22psd61vsnf1m64zsq9fwz6yani7h4lr2i1sp"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.6.0"; sha256="15lrlg8yl570cxyqlh2cp7cy6l7n9bcbrz2dn9713q3649r9gh9z"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.38.0"; sha256="04jc58rzd1ykchhvcg5zvi22gkj26g4a2qm9ciyky9my3mihjz1l"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.36.0"; sha256="072hip7xgd55bbjbnnw645hm89cv7821j6m02d360hyi4l17kmbf"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.36.0"; sha256="19fsyxdfaq75r7a7z0p4479afgk8bjbmnw8yh731s826hd5xbcjr"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.40.0"; sha256="1bna044rbxmqck6rkq3dyrc3cgvvscpldzv4j7skw55d9vxy495a"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.18.0"; sha256="0lrwkwf56nqzwrn0vs5g8xr5vbb32qrlaif3c86z04jnzkdx3xnj"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.24.0"; sha256="1fqv9hw18aa9rb7mq09d1njl0y8ix2m1njini99w7ivs1c19lcpa"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.10.0"; sha256="100r6sjwkbwhw93prqszgnqsgs2i6m10kivzrqwrmk9kbr9ib58z"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.34.0"; sha256="0yxpsgqigv75dwy8hn9yrbxskqalh2wdhvp0iv84fr1m7md5k9pb"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.26.0"; sha256="1ig42k7xwxpmcn1iairmg3lqvii5jidrm6v62whjpmvafh7sqjvc"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.36.0"; sha256="1ikmf894d8bqk3n5yvsm4chvs65hi8drvdwdagkrfqvdrf0pb96s"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.36.0"; sha256="17mxnym5wqzjgli5rlkwrck5jp9qdhnvmqaqmsz4w1hjdx9raxb7"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.36.0"; sha256="0kyy1pm7582am6rgfr8kbfw1diwb9zpsblgnbjq0c18zb3kg21sn"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.34.0"; sha256="1xcnsg1cv1q13bwaqf4dyv05fbxpjg58c338v0nh9sg13nrg174g"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.30.0"; sha256="0k3zdpxjzv2nc2v11n0hk7gi8s7v1gjmmqslidqi2y77y1z64rpr"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.40.0"; sha256="1n92qi82if1myq6qn7143dn3bz021qf9x9pfq93sjp78gizd8n41"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.10.0"; sha256="0wprivx26a0c0j2yjp74af97019lafg3584i2ik3pbq9kn9qsnk6"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.30.0"; sha256="1wwhkjhnpn5qyvnk2a2x347gry834bk98ri62qgkn48i7bxdl4nn"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.18.0"; sha256="0im0wp751zqf46hvv99pmy7qz0j2hlr8mqyxljf8m0aydrhdd1c0"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.40.0"; sha256="1d0q84lz3a47znd7w3hjcml9awvkn4qaqk0zlxibifzzbqyh17ci"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.40.0"; sha256="0lb36nhdj4vq7d87niwxllmyql0k283mxj41amcf7wr5i1lkx8bq"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.40.0"; sha256="0bfsa6niqrvz4krwc8lgidx57n311lvnxdfajzxg0icinlji4nkc"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.40.0"; sha256="0b3jmbf3brqd8w4f7ryzxkgis0g36ckr390gl2hw5llvsz01kr4v"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.40.0"; sha256="1w0j2zgw5xd6ni13vgi61i4zikpf62h6miq8cfhqc6i9frb5h3an"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.40.0"; sha256="1ngb3rwdz6891hlvy4qblj0p04l5hgcvj60yb1nfccbmg9389phc"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.36.0"; sha256="0dj0nmsqmp8wlhjisjj1dwiyspjkkk2jlb9qkp6p9c2brbbpzyc0"; depends=[Biobase Biostrings IRanges]; }; + healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.2.0"; sha256="1a9i2qyhz5gf98096hll7q8mwzidff8jrnclw2z1s4w3wjmv1f8q"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.36.0"; sha256="1s581y2z33420cjjmr05l0hsnrgiy3ifn7mhhndplsmfy9q36kji"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.36.0"; sha256="0q5dlsndx9b77wndai51dk2mv6fw7qkixhq9vxrsvy7yapflc68b"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.18.0"; sha256="0vx2gfxbk3fr4xcicwblrm1lcnmmnljpv97zrzlgyqmx5clj13jm"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.36.0"; sha256="167wfkp7w6ly6mzmdjg7lq2r2dyp8f6fpy3nfg2r9yli76gmx59v"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.38.0"; sha256="0n2g88j7rpqabb6gkq8gy0iml1dikkdknkkhzqaz79cmvj28iiy2"; depends=[]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.38.0"; sha256="1s5jlh5xiw5hgnk3x2c6y6rb5gjmbnc8mglih8kc10y9agghj2rv"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.6.0"; sha256="0n0bk4kh8d7sr5c8w953d6ns17ylzjq5dic4rh953l197pdsihfc"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.40.0"; sha256="10padi12jp5all6bpi2wp5wsx5cn7nxp100kcf9bm3rxkaqccfiq"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.34.0"; sha256="0p0mcwyhf052fviggi5vmg1xb8h1inp0vg4i0dqvqbh2w85fg3wp"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.34.0"; sha256="0l23s68hdjj2pj3wfv8vzag6lbsd3py2463b2rgb084b4cnsc07b"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.38.0"; sha256="00bc1s583mkj9iqn64mgz3h64kj5dnq1b9lwgz73cn9zhgzll9lx"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.36.0"; sha256="0pksq9gi0vahg10lnr81nacn5rlb6i3z495ymm7vqiiygc4mx81m"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.24.0"; sha256="031g2hzmrbf83ac4inn9670nn055axr60hiv9cj8jkjnwpi938sj"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.30.0"; sha256="01bd8zcxnncfkfdlli7ay4v8rh2wkhh6gidk7442qw86x7d1dxbx"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.18.0"; sha256="1bxnczhvmgf1ilff91h9g2kzk6i76l42gh2gfapjlkhd3g2wl31z"; depends=[]; }; + macrophage = derive2 { name="macrophage"; version="1.14.0"; sha256="1dwq7agr98pqv5f910kz8z4szscsrl15j4f4zakv8m1ajkyz53h2"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.34.0"; sha256="0bpm2w3p97sp0jwmqmzs2h4pizfj7x742pnnib5rbvlmc59ypwc0"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.42.0"; sha256="0j8ikjbcpd703gpzxi7lx4hmsrh0p1vxz222vnw352imd2bxi58v"; depends=[]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.16.0"; sha256="1wbwf365wsd931y4a0vyif02svl16rx2rglxkw93i7cdkblpjr28"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.34.0"; sha256="0hw8kaysnw6kf524vmrkkzkins1r8a9w6a1x4k7zq1hklfvwb72x"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.6.0"; sha256="1ip9n0329d3wx4q9a4xpng6lzrls3yx93c0z9m0j2q1jsb8bwaxa"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.36.0"; sha256="1ln3vz92ci3m8p165c33j2p6zxzgibmca9mdph1k1cc1mnp64jh2"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.28.0"; sha256="1gz7bnis42vmkx5h31nvrfy7gnvypb08sh5ayblfzfcva1mx14dp"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.20.0"; sha256="0hxwnhlvkhgjxljzmkjs94r3d1w4da8g2chryqyllsklhzs0g0ki"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.6.0"; sha256="15y39w53yn9jzm682fhq7cf971pcg78hn1xbdha7aavdnd4032vj"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.44.0"; sha256="15s3kc629m2c78vkidmp6kcc28sn1wzjzrxazmd8z7x8cdad3q4g"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.24.0"; sha256="03kfxq5fq66y6z1aliyxam6dgxmr4asmxvqfzla8br5rpd1sa8qc"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.28.0"; sha256="0cqchzvdk13y80xsxnkaxd4x6c14d6wmc0vml3i8mzdqfh2d5bz1"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.36.0"; sha256="1p1acg1gwc1xb7g66bikvcdjix007i5l9vi8r4qjm28h78iij1rj"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.36.0"; sha256="0bdsfnb7qmazshzy2ww8vp2n3m0x27v65z94gw5bi6bnrmakl040"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.26.0"; sha256="07zjdbi5nyp2yq9x37wk4yg24s3c5l8gw1r91x0pb93kb52i5p1v"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.18.0"; sha256="0glsh139jn0by93f52850y5nbh14wbapc0qmr8ib7ql7y25q0l16"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.38.0"; sha256="0rrmf8dygql6pisac18khjk4fn2zk2wn6f9j2x3y4z5345s0a0hn"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.6.0"; sha256="01pxk4hs8zd89ck1q7h0apd4ypy7v7y9k4xx6rqd80wzn5bkc8rc"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.26.0"; sha256="15idd0dl3q3707ircfvylh5q12ndpa38fk5cwba59732092pc866"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.28.0"; sha256="0nd4zb7lr4v5fcms3qx8zhy72gwg41kk6x2b1q68hajf8dww6r9x"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.12.0"; sha256="062xiaaka1k1raq5mhmr1wxwb755ws0n00dki1zsj2kl4l4lca2f"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.34.0"; sha256="0lybg4whmlr8d7glmlnz981n3cg5ypmj2w7pdkxwphmm0l0bchq5"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.14.0"; sha256="05i7yrmibbv4wgdnmlagmpnxzsv8hiqnf5w3cbpm3xvchmi3zzvx"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.4.0"; sha256="1991pdj4mwaryli85kn3v8lj367l9yqym6j5swmjmpgvszrk6b1h"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.14.0"; sha256="1dzwbqwm10zhn1qr1r7d704jhm2knhccmy1zywgsr1y6fizwl6rv"; depends=[]; }; + octad_db = derive2 { name="octad.db"; version="1.0.0"; sha256="09wzmy23x1b1dc40a522kxw8ry2migs22h15bfzl10l8mxryibhf"; depends=[ExperimentHub]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.10.0"; sha256="123wfjjv8pcx4xjaggmcndmsdcsdx4jr9rj97wlzwf6f7inxq282"; depends=[]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.36.0"; sha256="0q1fi4msl2xyx3cgknwmfp9hlgqk46y68znrq0knnsz6fkl4n9qa"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.36.0"; sha256="1yk7cyhsdj1zp87ggng8mciagp8kpkrnrv5qa9w1i8ap3dwvxrs8"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.26.0"; sha256="0xi2f37v0ds6ivzgx53mfb2isvz8npn8wmdczg88ym6b77g6a3ki"; depends=[DEXSeq]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.36.0"; sha256="072gqidg42235zfx8qqd8sv7kigrkagkkw4i3nj5sbxzqb1f8vvs"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.20.0"; sha256="1ga9azlwx6qfr1f452k80bg2kfkwf18mjk39plq0yjzisrj1jy5m"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.36.0"; sha256="13c9f1hwfngkp3d4ljcm5xjlr6r6fsiyb06b18q3b8kp5wya9lp2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.18.0"; sha256="1cirzkhi76jjqf0cgbb3hq69ykkivpxl0nf52x3vi3wp67ai3x0p"; depends=[GenomicRanges]; }; + plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.4.0"; sha256="0zpsjr3q3jgd07091i78x4izcqaxk1dqyfanmy2z08xd313mqniq"; depends=[]; }; + prebsdata = derive2 { name="prebsdata"; version="1.34.0"; sha256="1qgd3bmlm2bcqyfsdhfnms6q1bsdi7k0pn9yd9lfwzd3yj9lns1m"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.6.0"; sha256="0hs04i0l0wsdcg9k2j2gbdfmi2cd05gmncjw8vbpiqc5170lcxnp"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.26.0"; sha256="1z2s8z98a3zbj9wjzwgma3pbl0z2bjkqv3lgslay3l8b7xb1pw2r"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.26.0"; sha256="008d32f1wva5n75cdz4lf0pcm0bszjc0qklc69mxq64riq1z410h"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.26.0"; sha256="12hndm71gqicmkll47dc9blxq650k20bny7dgckg4jx1ck5j8dmr"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.26.0"; sha256="07k18cx9i0ca29hf00dfmqp3qbqdlh10hfx4kwn4q42ixj57hkf4"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.26.0"; sha256="0bg8jdvqhrh6qyyp5jsrsv09wzixsxkwfx7j1g7jz5w4zh3z35rx"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.6.0"; sha256="16x9c6gp7mg8hiw9hv49nmx41hd5sxxhyblf2jq8gf1aydvmfpij"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.34.0"; sha256="1pc7jmx5qh3zj5wk7kjfzlbq2cipw0943fw5ykqivvlinlg7f57y"; depends=[Biobase oligo puma]; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.12.0"; sha256="1icq59yifsaxifxl29pxx97vrl27cfkwqziz9cpcbc3lqfp8iqmj"; depends=[ExperimentHub]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.16.0"; sha256="177gin4y9jb7188myan5h847yzanwgfwjiwrdz2bd2iskbygbsq3"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.18.0"; sha256="16p33xyp8pw2sx2bq4fhlxlmrlfy0b6zqpnf1f0dy1857nll6kp4"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.20.0"; sha256="1imqc82pfmxpiscajslzw6fyy8qplabmyq6745p963pjh7kqk7qb"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.20.0"; sha256="1j3ix1900mckca70n4qjzaw44mwzqfbvc5nb0ww23b5ihbly0gls"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.36.0"; sha256="1ks94mcjvr6fm9ww2h2ll9kcnmm0skycj58z6g5g98182nximy65"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.22.0"; sha256="0ysf3mssn9mpkpcy1p4m93h7fc4finb8gnv73046bwmzc3nlysj8"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.4.0"; sha256="0nkr32jm772ksrc8yns1j4nbc4sc83hcw4v6l6imwm845dv8n4kz"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.12.0"; sha256="1kzsd2armxy4b8q574qc6wzjnf668y8zdp9mkqjnigsvfxnw65zb"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.10.0"; sha256="0a46f981h3b99qpys48845cy5a75bv07w64bbmzn9kxy12njdbwf"; depends=[]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.4.0"; sha256="0ijb1m2fcvg02zhw8nxvbidl5j422p1szqii5xaqxwy7jq3hygdk"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.6.0"; sha256="0kmymij0zm9sramba3nmg88ci6dvypcf36lh9bmshn692cp0ga4s"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.30.0"; sha256="058fi3p0kmvk7p7j81jgcysw17ws0ppnsfkxljp01w111aqlfgf2"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.34.0"; sha256="16giir805vrqgfvvkrivh9jzd7kbblk3yk9ykqczsn6fjrmkbbac"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.32.0"; sha256="1iz5d3snnk1zqiz90m3m29138wwh9zpv6lqqff1bphir0sn3dhk1"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.34.0"; sha256="1x2ipkpgw8ln8n7s5naiw69vqk7jdqvbpvc3551i3fiph8dp5j7c"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.16.0"; sha256="1a5aq0lzs5w2zrvdm3fwg34rx36ypzpzwhyrw2w1kfpdpnb41gpz"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.34.0"; sha256="08xfx7y42y7zhy7j5qjsvzgy71fi6zdzsnz8zidsrjqbvky5j0bw"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.18.0"; sha256="1bwqfg29dghnr6d3ds4cj48w7azrmi0ichlvbpbvi4p5p0v06p4c"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.12.0"; sha256="0s4pcfnkks8bw9igj5nx3b21zpyj3zzl4dy71wc5zfb9xdzbrkbg"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.34.0"; sha256="02613cn3rix33pybf6da78yi76ccswr69mkcvhfx0h78hpgk9qy2"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.4.0"; sha256="15ajjp19kfnfdddsrsgdkwa28f296xpb7jza51cnyix34n1xzrhi"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.10.1"; sha256="0p88kl1l59iy0hs2jm4xg100lgnplzak6imq9pqirgnp0j5py4db"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.10.0"; sha256="1wccrbnk1mgpi9hfk7agjyhlkv6awpmk1iaqng9m6540s51wqrb2"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.34.0"; sha256="177zrz7pg3i5rl2yl2mv8chasaa6kjanmqp1q1fn3lxb5w7cc12w"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.38.0"; sha256="07hv42g9p2n2yflp5zfss3n8l1mbfvx70xrgd4jshrbf7vq52w7s"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.36.0"; sha256="1bihd9xg92v62p20hfk0q00jvfbpzpz80qlsqh14h5dcn663ivc3"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.2.0"; sha256="1cywnnwxbwn1bfvha5dqc29lgb3q05hxdh0icql8w8lizv8z0zj6"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; + tartare = derive2 { name="tartare"; version="1.12.0"; sha256="1ygv0h8v7yll9b0kp0v8sclbhwwlkz062ycxg5qa0yzkbr5msysc"; depends=[AnnotationHub ExperimentHub]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.8.0"; sha256="11kkf874757nka958vdg9nm4cqfv5rfy5jikm3bpw2k4bz5v3iwc"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.36.0"; sha256="0pax9b36bq64ry9wcpyrqlggqc2mfqxxp3yvv1hsxpsyb880xlmz"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.36.0"; sha256="0rjq0rpm1bq8jb63qa8ywzi6dp4dvwn3hyx7qqmgb2dazymqz8hj"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.18.0"; sha256="0wzxpi9ix1c6jk553vr87vhpfbigf4c280ynms4kl46rn63v3zvz"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.26.0"; sha256="06wyfskxy4mr6bf9c2h4idc637x7dnrfm2affd0wvfggypi8nxh9"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.20.0"; sha256="0hhl8wsj3x3ff9lv703qw9knyprm8ajlfbqqrlx37vkviwxb90zi"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.4.0"; sha256="0qai1w2gvwr6kz8jgb0g8bdb56xsasd9z18fjn85z0k87ml9pnw6"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.36.0"; sha256="19n0gw60vv4kygckdcl70qy16gm1hcwv5zg4dgn1a6mxpj65ksn6"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.26.0"; sha256="08xrfs8bca8vyh4wx5nd8mf7r8z3q46wflnrn2w57zavymgf8dqs"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.20.0"; sha256="0r0bs5d27knwpgpnhszg925slxdha94nika533iv3ggkv5f4927v"; depends=[]; }; + xcoredata = derive2 { name="xcoredata"; version="1.2.0"; sha256="0frv5xzqldxqylz82557acrnlzjakc3f1kpdbirvv19aj744x2h0"; depends=[ExperimentHub]; }; + yeastCC = derive2 { name="yeastCC"; version="1.38.0"; sha256="0c8mx5amk60gdjmrxjvm9qnhfh6vsxlz7n96a8a45c2xdyrr9bbz"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.44.0"; sha256="1z9hi3gflpj39ajg73gmyf1nx2sm0nl51fb5mb3giiwal1kp9js6"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.36.0"; sha256="00z4yvmyqnvwvbnp79k5hn85q4k8g54d46v7nmbkwf0nspj381wb"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.34.0"; sha256="03vdl4wh11s6yqj8j9ws8is2yq7awwlr4h6q426lww6hnkadfbyw"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.36.0"; sha256="1vqpm9jjs3d7ab9vkan7622dlz0z6pjnjy0dcr3xl3nc23kbvg3l"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.18.0"; sha256="1nmgh1v2sryhhx0zrysv54lwvk63sqhhsks5jrvahpqd64p4k3qk"; depends=[]; }; ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; }; + DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; broken = true; }; MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; }; + ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; broken = true; }; tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 8682a22125fac..8e9a7c8b51790 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,2165 +4,2236 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.15"; }; +let derive2 = derive { biocVersion = "3.16"; }; in with self; { - ABSSeq = derive2 { name="ABSSeq"; version="1.50.0"; sha256="1kwl0gcqwbgblwvpbvqlgnsi91km77j11f0q1f0gd6hhnv38mmlv"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.64.0"; sha256="0kjq00i2mb21xyjjs3jy09ps80f11cy37wywzjvmxyjxzbsk4d7r"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.14.0"; sha256="1xnw288vz810vjkidar5h218wyc0q2hx0k4zi3r88vaz5rfhc05m"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.52.0"; sha256="0ilcsgpc4m47gifxc0yzx2xi3g4day515mncnnjvfdj3iq8xwk25"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.12.0"; sha256="1cgcjykik9hjrwlvvgaccprcrimgq5kwh9cj6367yk9m574a4gmn"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.12.0"; sha256="0vvd5qdwkfcr7zg7z63x3vvrcg63r6c9p383yvcg2lp8zmx8hsbs"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.6.0"; sha256="0885kd8mpmwjpzpx14pi6l3mqcvsixk10vkf5h4sqb7di0nnna4w"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.36.0"; sha256="0awjxl2lwyh7hkjsx1zqsvrh649s9zn89za1iv8yd9l48ch2zfs5"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.44.0"; sha256="0c44fw5ajdjc13409rn3lsv0jhlqa2qcak9b1k8hpig486xxzsr9"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.28.0"; sha256="1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.28.1"; sha256="0xppx52sllbz4pli174422i4kkf37v0yl844088nbj3j9r6pfbj9"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.12.0"; sha256="111dk19b9910icksyr592cvhc5gwvgknr5q4887j9yxbajd7hcmx"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.22.0"; sha256="0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="1.6.4"; sha256="02vip6b6vkzwnwsmdxpmrkd8nb9diq05wvrs0yqvxxnvkj980ppz"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - ANF = derive2 { name="ANF"; version="1.18.0"; sha256="1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.10.0"; sha256="1xixj6ck1akwc01gv7xsgnnflrkhflsrpq2cbxh5s7z6xj0f8k00"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - APL = derive2 { name="APL"; version="1.0.1"; sha256="0v6m5vcj5c1f0f9d8ksyhq58jgqfrjsgg4vf9pmbb36gvf3k81dk"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.36.0"; sha256="1pnvw8psbql787m8lrmhd9xbmgkc3dbc70yfds1aggv50dk3yjk1"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.22.0"; sha256="1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.40.0"; sha256="1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.30.0"; sha256="0mxrrkm2lg7gxjh8ynn6qmryn8wqda7b83sr51dpgblay83jcbaq"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.12.1"; sha256="1qx0qpwl34bayk3gj6lvc7rsq3wnzkdngz3wyxnsab0r3cmqcbab"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.14.0"; sha256="029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.32.0"; sha256="1f1lqip58cvf85nmq8mj7phlk0plcfv1h5ihc0cf2h5y7n4wrm9n"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASURAT = derive2 { name="ASURAT"; version="1.0.0"; sha256="160wvlvyc5dddjngmd21s1av292f6nvjkabag9iz8dipivicyi23"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ASpediaFI = derive2 { name="ASpediaFI"; version="1.10.0"; sha256="1wn7iwaj92j1qvfp4l93ir4dawd1yczff3qyhh886qw2jcbf0b99"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.6.0"; sha256="1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.20.2"; sha256="0jj7n0mcj0gciw0ksazlksgmwzp51a40pwqhf0c7la0cc4bnrkqp"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.18.1"; sha256="17wr7dycll0l1gax4w268qw7is163bs51rj6p1qnx1dgc9ibnsgr"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase mixtools R_utils shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.10.0"; sha256="050k7w0azsl7rqx2pxgccihzc2q8pmh6fyy4gib2d42sdyijr2n1"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.14.0"; sha256="0wj9shzmlxpksbxny571xzfcmmqqzjlk1vq4mx1is2r6ma7jkblq"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.56.0"; sha256="0x3lj1jgqq67389rzfklah5p878ns9b4fpdpz455m2gq9sk7qsda"; depends=[Biostrings RCurl XML]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.42.0"; sha256="16akwmpzwxai7ks5bvc1yyb9sx2scv9b9gas5avb0sk5fk0h3nsf"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.46.0"; sha256="0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.34.0"; sha256="0w4xd0xzkwx7bbhrgqligpahlhg85rginknx520z891r8v0bim2z"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.10.0"; sha256="1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="3.6.1"; sha256="09z2k6mqr837bh422mpy0k71hwsmc4s730f58fq9ya651cjzvdcs"; depends=[baseline BiocParallel dplyr fs future ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown signal speaq stringr tibble tidyr vctrs]; }; - AnVIL = derive2 { name="AnVIL"; version="1.8.7"; sha256="16vqqm7p3v92b51ir9kmaa410p57bpqpxr4nvqngz2c8vvkm5l5g"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.6.0"; sha256="08bc1lsjkgs0hmrfi2fbk5swbi5ckgrv4vhsfkqqywfpnkq9k436"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.6.0"; sha256="1iwvm60lricpsf4nr99wxhni0lwaa4z8aibr7lwj9gdwf2y43c9x"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; - Anaquin = derive2 { name="Anaquin"; version="2.20.0"; sha256="1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.24.0"; sha256="1acsp987jv2x4qwbgy3y7ff4r2qz7680b0nbr37m4lmncqfgh8yl"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.58.0"; sha256="15cwy7lic89jwl3dr7j4pb5bx457jdpvzvylr71624s0p0j9rgwn"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.20.0"; sha256="082lpcd6yr2nkxndlck2wqqd3nfdx7lnpw8barxgv41q4l7v4ald"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.38.1"; sha256="0lcr79a3570h7zg4z691gxg2vlyqnars5811q0clzinbmq7b4x3v"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.4.0"; sha256="03dmbx43rsv9xv94lk12gpraq47ryc13jijwma3q05hl9wn8xjxs"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.26.1"; sha256="1s104n0dkrncbdihd4jq28ibl0v8fnbaxfkhrv7jmx3wh7j4vnfp"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.56.0"; sha256="0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.46.0"; sha256="1bwgqadqrx2zasyr1dhapmwkapdfdmzl6z7fdlmafmlsfyvqvq68"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - AssessORF = derive2 { name="AssessORF"; version="1.14.0"; sha256="1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BAC = derive2 { name="BAC"; version="1.56.0"; sha256="0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.34.0"; sha256="0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.36.0"; sha256="1c1sdv8199kj2pd1hwnbmbf2a4fb7zkazsjgn8hi9c5sm7mlnc29"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.12.0"; sha256="1423djb7cij68y0q2dcp8q7lrcn2fxjn6d25v4qy3w00b2w8ppg9"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.8.0"; sha256="06g041xcv2qci2aapj3g4i32xzw508nhvvss9lfn8g2vdhj07inn"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.26.0"; sha256="1m4pwfl920pkhnpdc1qps65nsihn73hzyach1d5dhvx884540lq4"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.58.0"; sha256="0c1q7vag7jj16wiw0lbvl1b5k8f1wyn9rv0rpnpl4642ab6sps1v"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.14.0"; sha256="19b3jm2a5nz7p43sxa0b08zvc1lvjnqd5g052rj98n6knfb403k7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.16.0"; sha256="0vslyhscqw1y519qmbilb1fw0482aplib8kb37pvmhy3ak1mcxqj"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.34.0"; sha256="1hgqiy52l34z8zxzvq5j528sy3pf2l5q1mjsccs2nkxalpd31vmg"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.12.1"; sha256="0r8w71zwsrva7734d1a23qbwvd7p380h0i5d2lrdgdq4h5p7kzsm"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; - BGmix = derive2 { name="BGmix"; version="1.56.0"; sha256="03f6nknp3n49yvg2d9qsmds676rva70pr4wjz0md228jczgjk0vj"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.48.0"; sha256="1kqajd16981y5yaak2imaq1i7pilgqdr3nbhggsakh787j1d9rc5"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.20.0"; sha256="1425r1gavszzdfh7zy9gnc20507vjqimadxrm9yi1y1knk5ikas2"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BOBaFIT = derive2 { name="BOBaFIT"; version="1.0.1"; sha256="0fvdmcdfyky8471nl6pb3iwrwgm8ydwx2xkh7cr94gmr021ghfcq"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.22.0"; sha256="0841wcb5khfi7g358jkrih64fwabwkdf9xydxxlvvvr4xw92pxqj"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.42.0"; sha256="0b2fjhv05lgvgpdfs2p191vv8d7v3h1gfwi29hc5agpk3fg1rzqn"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.8.0"; sha256="1nyf5qsf5av2s81bbwi43skaggwa5pd59sfidavr1vcizjmc9qd8"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.64.0"; sha256="17gqrmaf6xxghgrzcansl9gfw3ghkrqp87swlnwgyghqvflr5qxc"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.20.0"; sha256="1xn4ikvjilr04c68y5is27g9kmxlmlijx3a1jq8vjbzz410ir6g9"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.52.0"; sha256="1w0d79gqk6xb6yhnffka51aiv540j1xknryhr0xznb9q8hf6aymi"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.14.0"; sha256="04c6xl2nbfgvzqi0kqf1g5sp3bf6a1blaqhassja9ara0wbs7i7a"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.10.0"; sha256="11rw7r0kdaqbj9iwjbyg107ayzqnrckc6w1g3v13lgdym0c864mr"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BUSseq = derive2 { name="BUSseq"; version="1.2.0"; sha256="1lcw75drcmsrpl5ski1xjhjr8whndp5h8y8hs5vkjqmllrrw0x11"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.22.0"; sha256="02qwk9n2fyg5f9xxjiiha9mi6p9ii3zi5x7w84sh5d5g58s27g6q"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.24.0"; sha256="1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.40.0"; sha256="0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.32.0"; sha256="14pvjdkgmkbnbmyyp8wfgvs6b1bvy1rhqwg8hc6jclwl8hfyxxxp"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.24.0"; sha256="0qmdiwch808i2k8fcgx8xdrk9j4lzm7x6j9k6n7iac125i1san31"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.24.0"; sha256="1mhffv9ic52v7jm3bphg2q0spk4fz729yjapiqxl56bira04bagi"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.22.0"; sha256="122vg0lvs3fkgwcvn259rk0m1vaz19pdfvhsj5m1hd3d2h44pv65"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.6.0"; sha256="0086fw2chymjwxwgzax6lky84kaa34900ca2p90pbjqx14b161vf"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.48.0"; sha256="19f0y6drsrsrwysb16xx6mafgiw55fr35pwxkjxn0ks6jc5vx1cx"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.12.2"; sha256="0l6smwy55mm4clb71l4bpch3bayyyf87nq1asbrv6s6fd22mmwil"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.22.3"; sha256="1f6lrazaibbz21sqvj59rq6ps9m1riw2y0kyidbn29mxf4ibwh3k"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.16.0"; sha256="03ypbbn8i0f4bl4m6wfdcv702jydniak56wqjb1vlrckd9aphwzq"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.32.0"; sha256="0n57bgl6xz5b1gpw4isimq2pqxmlabn7jzhbjg2fbxcklabdvrcw"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.28.0"; sha256="0r3i7n45qgj8wzdsx8wmfk0lc4xbcvxvmfziiqzig7r706q2c2hm"; depends=[igraph Matrix Rtsne slam]; }; - BiSeq = derive2 { name="BiSeq"; version="1.36.0"; sha256="1cnsh7cx500a3aaxqc7vn56b9ng2m5m9gxw1bhi84nm1hiig4ff1"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.54.0"; sha256="0qjh5bsjcjry6k1vzdaascwy2shjrkc2bw0w57w0qa458cbi89z2"; depends=[Biobase GSEABase multtest]; }; - BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.2.0"; sha256="1lypprchiyxyfjj33qzq00xla4sqd3w9dp3sa863iyhycwr3bya8"; depends=[GenomicRanges ggforce ggplot2 matrixStats plyr rtracklayer S4Vectors tidyr]; }; - BioCor = derive2 { name="BioCor"; version="1.20.0"; sha256="004mksswampwisljcdz6fswwbgdjdii3y86gjzib0gf8v4w7w4q3"; depends=[BiocParallel GSEABase Matrix]; }; - BioMM = derive2 { name="BioMM"; version="1.12.0"; sha256="1sxa6safl4dp2b89bmgshdvkc1s0kxrmld3xfv2wlxkf90b3b57h"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.64.0"; sha256="078pnyygbvbfxziqspfr1nn78w67xyb4qmiwc34czga5psblvfwz"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNERO = derive2 { name="BioNERO"; version="1.4.2"; sha256="0dsznfnhidbmf52rv8l26f1ms2k9yy4q4c6cf3x8ylc79c1sjrcp"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.56.0"; sha256="0kcw71j4nmdkn373wk21ak6h0v4gycivnfrklb72kk1qcmsy1wrm"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.16.1"; sha256="0zs6pymvxb95sji0rnnzaz3whj7hsvj2kl4n4gzj7w1q0prbfpb2"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; - BioQC = derive2 { name="BioQC"; version="1.24.0"; sha256="0vb2nnzqvyv25pw8qshcmijravswafg0858pkgqjgiv7wsr2mn3m"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.10.0"; sha256="1sihi5zy7mlabh3ix1wvdqz8ibfq1avl8bnxjhvxyzq40zbcklh6"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.56.0"; sha256="1mnxky78an079p60427cjvk4fzilp0xzy6b85fq274qvdcrz8jbv"; depends=[BiocGenerics]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.32.1"; sha256="0bq4xrz1spp0bmbccxydkw6yw03by5dysz85mn152ab6xixm52lw"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; }; - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.8.1"; sha256="0a4dcga18bw5mvzmsml28bf4zclz32pp9iflnbvps7pdxvhmmg9d"; depends=[dplyr httr memoise readr whisker]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.4.0"; sha256="1bdbmlixrd8wvs25nmzdksq5hwnsxf8b6ds9qwx01h284vky5vsw"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.42.0"; sha256="0iv9bnpw2hycndwbmjsszqfwrksz6dfr6qcz78jkssc9ldsgmdhc"; depends=[]; }; - BiocIO = derive2 { name="BiocIO"; version="1.6.0"; sha256="16j826w4zrmbgpmq6nyglcrjailsfv48ih1rz1qn383g7v503ydp"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.14.0"; sha256="1a43hzmcpxviqa9723hkafr6gm358amfpqj9d56imclkkfkdz95x"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.16.0"; sha256="1alplszw84vqa1mvzp996f94s40scmh4qwbrqhg43hrnyvbnq7pi"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.30.4"; sha256="1sf87gxyh41v82pip71qkqpmind357zyngzyg1f80iz65c85xk0k"; depends=[BH codetools futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.14.1"; sha256="0akryshjdn227a8ir8r0lb59v060h58rhy5vjmdxax8p81ajzxkd"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.10.0"; sha256="1ghba7020inrdxlbrrgds9gjymjxjma2p89b9lgkjin89zalqglh"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.12.0"; sha256="1sraycnn0jahpi8kni1y8ik00ga89fvwqjmbr8388968q22mvm3x"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.18.2"; sha256="0q9qlp12ycmhnvfqwn7mvrhd8ypwnbbf715ficgx1xnagh72dpgg"; depends=[basilisk reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.24.0"; sha256="1nwiib201b9q1x19ihqjqr5jl0vnid8wfgpi8sa3y02bn722g5a5"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.15.2"; sha256="0rs4nyza4hqqk204d037gi013135wgfhx5asq2dsdjc9vk5nwzfn"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.22.0"; sha256="1jj4icpkhrv9f6yx3vghkpdil1pfghf3yvc9756wmndvhs100r5l"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.64.1"; sha256="1wk8nlmp6f6fsjrcb4fb48s3ay38yywwad748i6lfkkcw2pdfw33"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.40.0"; sha256="0pfsdc15zfn7sizf0zqh0wjg5yr84kd9lmdifykkbxk882gjy5fh"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.4.0"; sha256="1dlb6jbzrdp417sm55y0h90sx2l62h4329l67w49z321yi7iyw1j"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BrainSABER = derive2 { name="BrainSABER"; version="1.6.0"; sha256="1rc4ff0rglbj1kax4fdn6mmv8jzz5qyapi9mjb4nh9ffaswfj09n"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.6.0"; sha256="1389ymch31wqmp8spvwzyhn95bv1h7nkzhin6mzz1prp8rsdpc0z"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.18.0"; sha256="03z1vkbimvhgjl9c08nndvjzgg2d3d3sgx9mk8bv65brpgpzd3nd"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.26.0"; sha256="1q5hlq80p848askxafni502yxnp587vpla65hb2925pcighnz5a3"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.60.0"; sha256="1sla61mrmwpk3aczgggzmnfgy9wr1cqknv6rsyscjniii7shn360"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.60.0"; sha256="07m2r046lk1akbccy52n2rg3ydzkwl157xlyylfqhkmpz7x9zix2"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.4.0"; sha256="0gy972qvvvf4rbxrcj24l3x8kk3ic85y6l655d54fvlbwr8h82iv"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.4.0"; sha256="054wrw550sxn6gn1h3yra623k48syiqn0cm0kz0nn63ys9fmwk3l"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.32.0"; sha256="1mcmfghl982dqr13bnybx0v5gs302hnnar1m64l13f4si6lnxk62"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.16.0"; sha256="1nn1flq3732vbxb7r971sbk1qxiqdgzgib8v0g21v8362vajcjwv"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.2.0"; sha256="03gxnbsf8byk1ggijf264p6dyvl09hihkmrcx5m28pjs0imlzmhw"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.52.0"; sha256="0jz8i0m8g8f18yzjzkgf4xsk038nm6h6qdhsdmmkprz97ysjayr5"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.6.2"; sha256="0shq6bdhbfvsg0ihdsbz0gdpn8mwa2h67zm6kxfdh862ssfn4rbz"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.20.1"; sha256="05vfqwa9qsm16px77s9bzygs6zymcxshymmpvz86a9l1cy1yxbza"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; }; - CBEA = derive2 { name="CBEA"; version="1.0.0"; sha256="08hhpd7syycliqn5fw3x6pfxi89pghm4b4my4p73lvgkr75n71x4"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.22.0"; sha256="1zmm22rbwp706l2xl5623aja0fw01r0w9cn3dv8ga0riz3pz2fy7"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.20.0"; sha256="05lpi29mwv45na4b2pi59fdv6vfxdjmyd0xf1lsrmiy7c1p2df8s"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.30.0"; sha256="0cfkkvci9zf08zfgxv6knz00qf89x45g81ifml274y4jg40swcjd"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.32.0"; sha256="1010mi5s82q7v2dwfyn1a65cijxpn9lrjgn5pm5s6blzb8l4s7d4"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.56.0"; sha256="1q8yy60r4g5nyv2gbfdgk192xd73c0rrjr668d5616ddb7sx8wcr"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.58.0"; sha256="1qpsibp4gb09sn6fkwwrdjkh3a28lqfbk18c6fvn4m386j96ps65"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.50.0"; sha256="16i0i83wd3ibzkj5l5az3jxgsp78i6ragl3yiy3yymvgr9f2z3fz"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.54.0"; sha256="18k833qpbkyj8ywvgmglcxm3cqaj1ys4ygq7cvnv43d6sm4fi44m"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.12.1"; sha256="19nx25f4m45k9wc4rdb5siw7p4zdfrm75x0rwfckbrkqlk9iaj4q"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.24.1"; sha256="1xkjliliwq03qklhcsvm2sbw6hprvzwid2cccb5zyx6gap7kszaz"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.4.0"; sha256="12knj9vz41kbx0jzqw6ah1ils6hsxv5fbnw98mbi3phnr3kl9ih4"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.24.0"; sha256="1k6wl4y4za85n8pf96x9zj7irmq3glkpyz612wxj1s16whl6wy6s"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.54.0"; sha256="0bl8j1dx153k66vvmhsln1s58jnjfrp6ihfnydsgiq72zqkxhcbz"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.42.0"; sha256="1cnf8lj16d1z663ff4k5vfq4bkyj1jims6a6phkjj1sb1zsx3xji"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.32.0"; sha256="05zvr5fv8nprxqh2wvvrlf737dq242i20p1rpyqjaxihl6xl62kq"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.38.0"; sha256="161qhpx6kyn87h1p72mwfpi1pd4ck3cssr4f291axhw99sg6968c"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.36.1"; sha256="07k18izfzfnm7l5bddbdyhignv18fgv3varvi8ynv22zd0gf9bs1"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.38.0"; sha256="0qnfvfd2wsmpaggq2amp8n1ry7wgysxysfh97rvrx5ymivbzr18p"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.38.0"; sha256="0bvlwlf0mm6q3cp2vf87rb7xsha5cz9bk7vsi6ssxngmspiq3kjz"; depends=[CellNOptR genalg knitr]; }; - CNTools = derive2 { name="CNTools"; version="1.52.0"; sha256="1d5ahszdf0brbmhd1vi2l9v1qi8kbpkw2kawcdf3rxibla0756y3"; depends=[genefilter]; }; - CNVMetrics = derive2 { name="CNVMetrics"; version="1.0.0"; sha256="15ihpsr804qrywf968h0zvskcz1w8117hlh6ly5lr30afs4kfq5g"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.28.0"; sha256="1d7srf01ds32nbn2m26nc2bffi59dc2pc9nn5whb7kkgawgbh4a9"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.12.0"; sha256="08w1nmpvyy302024g6xcb3vi4hr8kspxqx40qs234l6k62xsri4z"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.10.1"; sha256="1sbgzsbiz0jhlswsj4xa517ay5pkjncikz653k6n7jiq71d2x81i"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNVgears = derive2 { name="CNVgears"; version="1.4.0"; sha256="1n93vbxsb69j302rbbgb10z576hmhm0f8hwjv36xr92chy7x6fya"; depends=[data_table ggplot2]; }; - CNViz = derive2 { name="CNViz"; version="1.4.0"; sha256="062rr0im9dfi7qgkwz3a34m63vd479n9m7d1nlm22fcalym5s08r"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.34.0"; sha256="1mdn5dljl8cw7sax4d0p6pv7kc9li8g3r19yybyhbv7wzh6q350j"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.10.0"; sha256="0ml09hihkf0drx743a44ff978nn8jgcpf4wchr7zybyj5k52dc11"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.28.0"; sha256="11pq2hym0hhg42pbk59fj0xri12i8mn6qhf3ad182asqh5sngvdp"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.42.0"; sha256="0wy91spx9iv81xqw7kqljhmy2wazpmk8s17bq6ssmybg6yxhdj5j"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.34.0"; sha256="0ib2v9d8bzjykrdfpclzxh27lkj2iaxlvl6z58n44x3kflb4js0w"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.24.0"; sha256="11k4j21lj27pp6ngf361k1mmq7drnd7xca62jsnrh4h9j00lsmg8"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.4.0"; sha256="04lw35r8c979xmzlq7ikf83vficp6rjlrr0iqzs6wlhzj5s0zfpz"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.62.0"; sha256="0lkgnypkpjbx9qhwph1ylijfqcxhjrvkdhlf4i5mpnq9ghpa0a3z"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.30.0"; sha256="1gz1kxjbbigvbgzk1sb3207gxhx70jnd1dfh89xpwsswia9r6laz"; depends=[]; }; - COTAN = derive2 { name="COTAN"; version="1.0.0"; sha256="0rkxz9f13jdm903k8ywrynvrpx4izv662pl0awbclicb1994adpy"; depends=[basilisk circlize ComplexHeatmap dplyr ggplot2 ggrepel Matrix reticulate Rfast rlang scales tibble tidyr]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.36.0"; sha256="1sw4jrq14wnc9v5ybgj3xrmnvh6kf9z6ybvskbx6nm29mz8116z3"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; - CRImage = derive2 { name="CRImage"; version="1.44.0"; sha256="0bf6lk3c04c5l08md43lda2rwj3way79ap259d8cz5yn24dhklf1"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.48.0"; sha256="0lzdl84d84nf5jjw5cc5lr36pllaw89ci08sn559dsrmvn9c5c1w"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.34.0"; sha256="0asb29dxhr92cspfq6v0iz8pdhf2j3amrlisjpm9nwhd8nwaxbj0"; depends=[]; }; - CSSQ = derive2 { name="CSSQ"; version="1.8.0"; sha256="1kgadkqjcac127xbaxr38r2icfhdz6y4q1w9xpamj4mjb6d27hq7"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.3.1"; sha256="18pxg4qhgf03sq48yp5m0x0jq5y27pbpqqlcvpn2pj09dzx7camc"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.16.0"; sha256="1xswflpx055x3lkakbvxaw6q8y4ndrpr9ma1wyia63ghvdnaian0"; depends=[BH Rcpp]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.22.1"; sha256="0dg35d0m1lvrqbq3v406qagjdpwi2kfsfvnby3mcj9lpn7vahg0x"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; - Cardinal = derive2 { name="Cardinal"; version="2.14.0"; sha256="07048rzp4x6593836a9iag8xjq93a94z9zvj6cbp0bj15w3p62r6"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; - Category = derive2 { name="Category"; version="2.62.0"; sha256="07js03cfdd6gzbzw14iavlqxynfcqszh988v6k1a3h074wxiivqd"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.28.0"; sha256="1ij6z12a6irbd1hd8nzd01xipmrgrpj7gqm6gp5r3hd7gfdpsway"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.8.0"; sha256="0hs5jk6x6kamajs61122vr39n7x65rx5qk3sfj2lil9r4wlmmc13"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; - CellBarcode = derive2 { name="CellBarcode"; version="1.2.0"; sha256="1xan4ha7aiasch2h1lk7adj2dc3prpmiily1s6pfy0chwj0bi76n"; depends=[Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors ShortRead stringr]; }; - CellBench = derive2 { name="CellBench"; version="1.12.0"; sha256="1sw3z3n7vdvw2352amc7biz35dmyzx7fhxdmz1jr0gdf0fhwhr1s"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.22.0"; sha256="1sz81czvam86am9mrzs3kn4qn0qz6402i7n2bdic7hcchl00qbbd"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.12.0"; sha256="06xjxdgmgndc06xvgg1kylnh8248j780r4jbc27hga6jha9jbh1f"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.42.1"; sha256="0hacmjg02hz9qjk0dj95pwg3670gkvy22hs1wlvkrkicmwk4746r"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.16.0"; sha256="11iqs9isggfp5l1sh9ndsrb5f57lhgpspsb5mmzd1vn182bsj3n8"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.14.0"; sha256="11xrkib9ajwsyz608d221r2z0nb67063ssmwd6i2zd4i7vhci5b0"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.6.0"; sha256="0ccx0698rircn5csd56il1v4s0707fhp2b7yidadrn6apv0jyd7b"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.4.0"; sha256="0697cfm9mlxk12acxxz68rng8niavmf42qlrkd8063k9kkzzh01q"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - Cepo = derive2 { name="Cepo"; version="1.2.0"; sha256="08bpddpkagp9yzb65j3caf740vndnk399rm21f32qvbq803y0lp5"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.34.0"; sha256="1sph506rwc4p25ar6km7yvg11aj7clk4bjncnlb75fynrv9zsarw"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.26.0"; sha256="1ck4pn24q222k4bhv4ngimzwyzgkf7a0nw9svhcmv91ys5h4lhhj"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.16.0"; sha256="17az2nhccji8qjllvr5adzb8sqr15rhc4lg0iq52gmn6w7f7vrlz"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.26.0"; sha256="06q34y59gf1iz0rs7y5x8ndy1wa95j65rfmz37aym5c46ijqsnq0"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.32.2"; sha256="1c7yi0ga6fbw7903aakgkvm9048a9yndmlg7sn15i2pjrvwql8ms"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.40.0"; sha256="1w8kvpvvwh7bjpk4672060vz0nn6ya0lm40k97grss1i4kmv7zna"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.18.0"; sha256="0vi7qngbyss7h6zzbqv5x31x09pnwkrhxgfsbmhazz6wczmwkcix"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.20.0"; sha256="1r4s8awvwwj1g33jpnzfxji23mfy0chkhi14i0ml5sh090xijpaz"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.30.1"; sha256="0a26glldxczcfymjvd45gv5m4hympziivm6wwx4ab9wld7n43l8y"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.32.1"; sha256="0l2514wvlc8q7n1zjzfrghdg372sp73z39204bkif3g6pdkcvbcf"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggVennDiagram gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.50.0"; sha256="09z03ym6iqllj007558pijksjz6bqizrq8r5y1s9f12919szydsv"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.50.0"; sha256="1rjh61721pxm3r0zh1jpk65f2ll7yyhk7d92hvp4hjmq8283xwsh"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.34.0"; sha256="1cxblrisvqmrng5zvsm2x9g2rjl088s9jmrxxapgbf5zxdv1h1lb"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.48.0"; sha256="1nri4zkc9lp1mqgsi0h58486vixwiv2989b6pmx2aj5c3575i0ma"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; - Chicago = derive2 { name="Chicago"; version="1.24.0"; sha256="13vzxmvxpc3r9gii37zvhhr5nbnaggrva97g6m2n02qn9daf6vmm"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.50.0"; sha256="1k7w5dlq5wa87rnqizvpr1pj3dx4l1ja6fls0691793ag337av0l"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.6.0"; sha256="0hvk0lpslmlbim3dlr8rngp6ggr8chn2wbx344mf71hy48qyvarh"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment tibble tidyr umap viridis]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.8.0"; sha256="19l1splp6364wfmddxxpj2zlq30frglzcrfs3xhkrai2yfx2cnmy"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="3.0.3"; sha256="1a24i413v2cvmcf9f20gdvdkvwjx2yvlhbiasiwnmflb0p95n48m"; depends=[BiocParallel dplyr MultiAssayExperiment randomForest rlang S4Vectors survival tidyr]; }; - Clomial = derive2 { name="Clomial"; version="1.32.0"; sha256="0l1z45yp02hqjrrbyggk78fcm8g25sgdqsy4z2s4b2phrjh8nlc2"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.44.0"; sha256="08z691r97krlzxwzcfhqkcpjwiacdxlfds1g4nzzi680zmvrdb4n"; depends=[DNAcopy]; }; - CluMSID = derive2 { name="CluMSID"; version="1.12.0"; sha256="0g9ml6dw5flcjlqjr4y33dy17hz2g9r7kavhywzgzh4167ppi0vh"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.18.0"; sha256="0aw6dpqb8ky6in6a7is6fjjhng74vzqfirrvx4f7pvhj3hcmq22i"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.24.0"; sha256="1njqcwlbxfb0xc9jyxli3hyq5fjivvhklhvxqcr4aqg9as577qad"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.68.0"; sha256="1agaxkxzgxfz7ycyjdmkfm1r21lhamkm7y7k7nxqkwpdz8rxg45y"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.16.0"; sha256="0ssq59pz0jfdpzj5dhh5bri6iffalhrgvl330v0q0zbj854fagm3"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.34.0"; sha256="16vqv6nc59jwyprhbwvlcmzya3837kimaplj0h09qmch9dr50yrb"; depends=[arules igraph shiny]; }; - Cogito = derive2 { name="Cogito"; version="1.2.0"; sha256="0sahx7cdqqnpzwb0164c84xwr246aiv4jdv9b07mw3k4s45z3h37"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.4.0"; sha256="0wwx025sv07h4xf3nvvqijvyca5mwdb8vsb8kvp4g0rxngc6jm30"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.12.1"; sha256="0b4p3ijhdcydfp0j58xlb5dn7d3m2x420n91rl9diqpg4r2gl0s8"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - CompoundDb = derive2 { name="CompoundDb"; version="1.0.2"; sha256="1lwl4n9zm196l8dc5wdp4xl1h5dncbswqsninzzdqjrdwbpflkfz"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.60.0"; sha256="1021cix4mr9qsafskw4kk1l3wdzx9pk2gcwjifz6f4zqxss9v07p"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.12.0"; sha256="01sxmgsjrwhg8j7gckmcjwjy0yfbhw2rnww8z4hk0ig5vcb8g778"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.28.0"; sha256="1k11kvam96hpg71hz2n9cfzizmb7d1bmq5zfvm34s7fn09is60xb"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CoreGx = derive2 { name="CoreGx"; version="2.0.2"; sha256="06wd9z8bgccxxxyipv30sgc2cxqnr1fmlpr3c11bqzaxp2g42y0a"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.42.0"; sha256="0ww39z987ig23sn9w2m7jd6rv3njiyslnzcxxzi6gbqy0dax8n93"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.34.0"; sha256="0mh66l4yh6rpd1r7qbqwh5jkklqyvpfiap0zcqhz9kimssm2pbbp"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.24.0"; sha256="05hb0z6zmi6vxn11l5cih7ja92362v6idzwiwjk67dk4rrk273va"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CyTOFpower = derive2 { name="CyTOFpower"; version="1.2.0"; sha256="0dkz6wihnlvmrbjvw1rigcm5mff9vds0izqhcr4507cmvclw6984"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; - CytoDx = derive2 { name="CytoDx"; version="1.16.0"; sha256="0rk3ksgycwxagkyvl3qm0sbcrzjwlmll9mrhiwyj6n3divw2qg81"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.4.0"; sha256="04k9gz1rbz2rkkdcn1g1ya6dcjslk4h8427dmy9mkz58nvyjg1ya"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.8.1"; sha256="01yzdljpyq92bv318b5qs29f190226zwbqjnckvxmbb0k8m7s5hw"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; - CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.8.0"; sha256="123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.28.5"; sha256="1z7p6h1j76k5dhqd1fs1swy2iyjh79h50nlagkdbxfpcc9vcfa3z"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; - DART = derive2 { name="DART"; version="1.44.0"; sha256="105f3awf9dxkmrqgxjqzsragvhavfnygzgggi0mgq330ybmmp1as"; depends=[igraph]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.24.0"; sha256="045q2bfzgq1yzhyrzvrhrnmlpka4gikrajxxwv05szksy5nvp7q5"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.16.0"; sha256="09a967x1rnv7byjwh29ngjhs67rgg27zblmlzx6pyqlwy5jsp89d"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; - DEFormats = derive2 { name="DEFormats"; version="1.24.0"; sha256="1y6z5zvqmcrsl184skmlryi27s6511xas0nr117mz1g7skd5j2f4"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.48.0"; sha256="0jdz7snssfiq9rv48irqsxzsgw9j0276wgvp61fpp37av4hp1dh2"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.32.0"; sha256="0lgz1zyy3dn1nhjkn9sp0bs6psrnvkli74y1aixrmq8wmq8dq526"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.50.0"; sha256="1pjyxhfbm03dmq2hlh2ndr9hr9q8mc5skyraywnhk7spa59vz11f"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.18.0"; sha256="019brs6jspc32ax6gj0l9kqi2ih79jsgwin4akfl80pyz83rr7j6"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.16.0"; sha256="0hqj9vp8pqfn75yzn3njfns4ls5fvryk483fn2qfmh30cf38flsn"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.36.0"; sha256="06mvb0jqn2fg96wfwspv0kzpa8xpimzaldrcy8m2d4yk76xwsdr7"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.10.0"; sha256="138j21nph0nzn69qs1gqpwqv6hx3a75rbm5k8p5xaaii3jr5jf1w"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.42.0"; sha256="1dzx9mvm8pvcrwr88rin3flnpmzp3vq8mvspx9s8virqhv1102am"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.14.0"; sha256="04b35mhsz87dfj53clgxrb7igkyv41hqmblb4429l68l55wsxhp6"; depends=[ggplot2 limma matrixStats]; }; - DEsingle = derive2 { name="DEsingle"; version="1.16.0"; sha256="0gw2zbq910jnn1pdpc5sgvvfmvg06hximz1qnvvmv9pb8g68r0zk"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.22.0"; sha256="06vjby0wpaczaw9bj2g2inylfnw92acrqgpadr70q458v1kpshs5"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.4.5"; sha256="08pxd01x829v6a20y2lvdsbmhq2as1c5pnsyzcjbpmb3d73aad70"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.54.0"; sha256="19xjvfymjclnd0ck7n7al3f54s7f8z3aszi35i0cavr7xj3cgrj5"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.4.0"; sha256="0mh27n8vsnsv10mq8jcslspyq86sfvwwgn8iib5w3f7qb47w5d7r"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.10.0"; sha256="0wka5s820k0vfw87dfycnkbr3c41wm4rmylwnkm8c0azjda8n126"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.18.0"; sha256="146b7568ckgcwg1r7gh6802vbfnha8a2b0kssxa4hf8vfd61a7mj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.18.0"; sha256="0gmfmmg7hs4qkinkypcxnk5ixylz47hb0z5x9pyd7jx3pldpld3m"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.28.0"; sha256="12rdw3l2vjms6z9n7nlljnaf91hkfcvyv3f1vjsxkdvl91kj6arn"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.10.0"; sha256="0l0fz89x1nxjszsdz9zdqrdz8jn9w22c3fasz3ach75fawfdznjv"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.32.0"; sha256="14z01pnvg3v15cmdgrb216hc7yz2wkpb6dqj7a4bsrfqpbjy021s"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.12.0"; sha256="07q6grnzpb5mmqidkd6dv95jflvxzzzvdyw5591is05px7if96q4"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.26.0"; sha256="0n2qlvpcjhrxr3br27gz9vhwcpf7sn6g4xdjazvvi3gqcgk90xc6"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.70.0"; sha256="10bh4p8nbl84rfngsm3bi9w542m159kff95f8c2hvjcxv5yw7iwc"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.24.0"; sha256="0qayysdkifa7dpin6a64zqp0mfvfxj2z0g1vcp757jci2w903b6g"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.22.1"; sha256="1mch26kddrhhzgi4bssnyy7bvdhprrncmvxl6zn1cq7g07p5765i"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.24.0"; sha256="1dph483ij43ayw0z5dbnp6gwp53ka7k5si1hp3miac7z8dqzv94l"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.44.0"; sha256="12l5b3h9jd2ld6g4vncxy70a8vfi37byl5k85ix61ir0rbcqf6jn"; depends=[Biobase BiocParallel bsseq matrixStats]; }; - DTA = derive2 { name="DTA"; version="2.42.0"; sha256="13x7z2zgxcnz8lpgdnsm5rp6j8yj6fkm03amymlnzihrqjdjpzw4"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.8.0"; sha256="1lyj8ic87bh8bwwm64rc5wj6sargf81x4x8bilff0gisq35w981g"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.26.0"; sha256="0dwn6p24gc4ix8258w8xvc32ldhh6w3q4drzmm7nwacfk9rjqi93"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.12.0"; sha256="11x6s6dsnh05l853218b2528adjdy4pbgf95jclibz9gx5nf4hnf"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.38.0"; sha256="10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.22.0"; sha256="19mxag9pzaa4bsh9plq4zrky3fpai6rangi01p6yrkxpjnnhrwqq"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.4.0"; sha256="06kxdw1cl2i3jqyfsk3cxppdhqcdmqqfisqn7pyidacjwjm16rvg"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.6.1"; sha256="0332mw9b0qvrnsvshjpcznglz406dqk44l7mjcrb1995ddld3221"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.22.0"; sha256="11id63qza9dxl1364gllqafxmx25a0q22jv5q8h709bgc3f0grqy"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.12.0"; sha256="1nja5h0vxl2i34dhag7gyjdhyaisqagn11004i65pwbx5fmwq58d"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.18.2"; sha256="0zc7560d5lizkfai7yf4is246mjw8n5j2wrrikrrv3fabby44h7x"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.4.0"; sha256="13g4dfsv4d5fdp8flxy7p7sc5l9jiby97zixpkda8q1smg2ggr93"; depends=[BH DelayedArray dqrng Rcpp]; }; - DelayedTensor = derive2 { name="DelayedTensor"; version="1.2.0"; sha256="1paciar5cm61gx894awwxb7gzqnyiwmsfinfijff2qx210l0yz51"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; - DepInfeR = derive2 { name="DepInfeR"; version="1.0.0"; sha256="03qvgk20dgxa95gkv2ya2dibiwshda3ssl5f95x5nn06lfgzk6m0"; depends=[BiocParallel glmnet matrixStats]; }; - DepecheR = derive2 { name="DepecheR"; version="1.12.0"; sha256="0rixczdds5gpac50wap6s68kmpdj4208l38gcihkrysz5frbvqjp"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.6.5"; sha256="1c82szcbbai9yldzby90p0q7qi4n9g1wd2wl7h4imyqyj2n4yagx"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.20.0"; sha256="08dr3ah0gakdkv133ipw1ib2w1p84hild0s4y9kp8z51qg0zk7mn"; depends=[cba]; }; - DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.0.7"; sha256="1q33zyhqc0dxfip5pcn4m5rvr4nivzic4wshdh8sk1hwpviwd90r"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; - Dino = derive2 { name="Dino"; version="1.2.0"; sha256="1rcll2y034v1n183v819brazr6crr73klp8qmkq51p7jpsvx1450"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; - Director = derive2 { name="Director"; version="1.22.0"; sha256="1s6yg90ai37cvkqq7gs394bxd70l85mgz36y6gyjv1bzbc298am8"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.38.0"; sha256="15l0h2qz80lmrm5rva3v7lkgddn42igyxxwims57zwpwyhrk9bmx"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.12.0"; sha256="1ld3515clkmxnwyn3z44n7h1bsk3qyxlf0v0fybv5k78rmkrjamv"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.16.0"; sha256="0iyd3my4kqs2cj284gym59ldq49jhga67z95qwsh1kyjapqiqjz9"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.18.0"; sha256="116s7s81yxkc0igfy79fqbn6wn1mvd73c5qx1g86vc1mss3nw7k0"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.36.0"; sha256="0lpcmx02xnmxrnkwssjgb9pd7jmshkpqslama920d905lrxydp9c"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.16.0"; sha256="1zq8yhix70a63piffia228zbia9nrzv85lga77flix4p836qmcww"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.38.0"; sha256="0q1k4pjfl7nvb1g97iraqfan59idwwp0775ndk99qv8lcmnn032h"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.8.0"; sha256="0xbhbjjhh82k7vblb3b2afxyiqqi17l225zwsycjqpvb2bqpybpc"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.74.0"; sha256="0yqidldl1n93wcdr7n6k18hy602r04b2plkblcvbvi0rlpwcggxi"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.38.0"; sha256="1vcx45bw36k9daw9dywj5bz77jmqk4gjfwsym8ajjnc1jmlq20si"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.24.0"; sha256="104534fl41p9qwi2md78prw4wdzd0c309j3pvq225z4n38fzs8gp"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="1.36.0"; sha256="192xl9fwsh04w563yk33mfl303d1kqby2ssbqkckqsdr4jb7d57y"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.30.0"; sha256="0530imykm1lpisa1ksmw5kdndjxcnj2nyvca6zpjfqw3wdj0s24q"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.60.0"; sha256="027zarnpxpdnyl877swp5ypxj7zvq0cjp2q2xs6g6yn5dpqjvxxk"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.40.0"; sha256="07rkar9yh06z3i7v4din5bwpy34a01xdj78sm3r4k64z4xh4zglp"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.30.0"; sha256="1qnpbmhxvqsma7ihi6yp3ad962xcanlxald84k2szh011ipxj7ws"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EGAD = derive2 { name="EGAD"; version="1.24.0"; sha256="1w8pfkb9capppb3m2fhhy84s1aghf5vp90zlmlnb0mmvxcs6i7im"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.24.0"; sha256="09z5247djg4yif8kvkzqady85r7k7xnls7n3hmpjld6rxb00qyrn"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.20.0"; sha256="1zffwm9m7mixnfc912f0g4qvnzljr9d13zrfg7c38p35qlkdi2wp"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.26.0"; sha256="14mn3p3mq0hcgr5ynf2jq09y7y1sykcq86hpsnbhgq56gf2v3gzg"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.32.0"; sha256="09lznn1ajlpn3rr9gcs9v8c370cdk1gcfjpb1cmp68gc22333ql7"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.14.0"; sha256="0g06svlww704z65jk9w747gs8jv6h75b9d096an0qi5zqp2s1lh4"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.4.0"; sha256="19mq43s0rfzgy793cf7l5a4vgss3s2l0nhnsfgdsrxv4gy6nfgnq"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.24.0"; sha256="04r9fcxaqajhzdbjhi9dhv8pppqlprc0g5h2spf0d798if51f2ck"; depends=[]; }; - EnMCB = derive2 { name="EnMCB"; version="1.8.2"; sha256="1kna7s4rz5mlaj7vwc0mrzaziadvai7zq8ajiy4jya8xw78llyw4"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.14.0"; sha256="1ghsmfyhb2wa6vm5zhpjxcbmlnwhccahjajgpccbn85lq2203lz2"; depends=[ggplot2 ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.26.0"; sha256="1960amh4pwnim6didgjqp6f3456ddndcsz2ghvpc0pv8v832phnl"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.26.0"; sha256="1bqq2jhlqm1vykrlr65z7yrvai406wymhrz0kallyhvgqwjbzwl3"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiCompare = derive2 { name="EpiCompare"; version="1.0.0"; sha256="0ca4xh0slzhdbji5ffqgjvd9vgaypmgl412vksc8n1jg6q7zx0xm"; depends=[AnnotationHub BRGenomics ChIPseeker clusterProfiler dplyr genomation GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db plotly plyranges reshape2 rmarkdown rtracklayer S4Vectors stringr tidyr UpSetR]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.12.0"; sha256="020jimk1qy6r62z6pibsi9nyjxpfw0ikn1h136pn13b42rrrmjk4"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.8.0"; sha256="12xa3h1j7jp1h27dz7hqfsbx3h4p76r5fm1bvspf52w8823qwpds"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.4.1"; sha256="0fykvpbi4jr9j5xkbia7gj7yq3xf2nfahasa44i4yswqr7d82bbl"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.14.0"; sha256="1vxkhll9zmv4w13xhazhmpbfjsc47g4sz2hizci491hyh41yq4jx"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.38.0"; sha256="06k8f62c9ssbmqgx2gyxhy5cx8mryx3d5mzrwjlq35jbnnvdqn8c"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.4.0"; sha256="11hna8vrm1az1zk7pw2dv0wh84sd0hw2bi55w40hqvs36csb7lkl"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.22.0"; sha256="07n2igb5sva2l323d7p1xqd7520a4fpfan4y5q0l2nr8f3azgfdy"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.6.0"; sha256="0j4qhqpgh925yjgc2cbrqh0vfc0wih4hvva4645cwmrd3hb09hzf"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.8.0"; sha256="152m93d0z4z5wksfbizly7dsr7v9a6c4qar540swcr4qba39p6mm"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.24.0"; sha256="0m9hjxdlndr00zqv8xh817n9bnf49smgdw0jc48i6rlmpnr3namx"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - FCBF = derive2 { name="FCBF"; version="2.4.0"; sha256="0kymmx151f0n42h6b8m07y3fir95a29bf76hskkbix18x62ak570"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; - FEAST = derive2 { name="FEAST"; version="1.4.0"; sha256="050m7l8wm5c9gzj5m9pd472l29affj5zzwgnjscb4gi9albhbs1r"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.16.0"; sha256="0j7h8xaxa0wkpbfwq17qgsp3rn45fkjv4fc3ca01y1kvj219a3vw"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.30.0"; sha256="10v82y7gmxxq1drw1w51r175ada5igy1ixj2m6y6kk8xldiy1ngr"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.30.0"; sha256="12qrqh9xm3zd2wlkda4n3h4v057hq3bgqzz8z25wnhxil6qyqb43"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="1.2.2"; sha256="1dk1pc3vhk2jgmmhkq9q0jy1s1ad5zxzgmnr6nx3x7wbaibb5rp2"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph magrittr Matrix RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; - FRASER = derive2 { name="FRASER"; version="1.8.1"; sha256="1bixarfx0ykzns4w5c556l8q2lscnxmmdbl292g9q7k9qiw39p03"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.32.0"; sha256="14wskfc350zrna1ng8wkyb91y3h01jhk93ajw3if04nkghav193a"; depends=[fda MASS]; }; - FScanR = derive2 { name="FScanR"; version="1.6.0"; sha256="0117fgbmig6zaik5j7axcw33rx2pjwhgla751sr4zi990a9p6igb"; depends=[]; }; - FamAgg = derive2 { name="FamAgg"; version="1.24.0"; sha256="0pzqy8rx7hyz93v8gh4qf861axwidxwiv3w9i8j7g796mdmy66my"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.14.2"; sha256="0vna7kmfgn6m0irrp7aqgvswvfmxcd8bjpl6l35mwqq2rm8h25gf"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.6.0"; sha256="0x76a382lw0j06h8hlq2vrawnydjngn9w0dhymyrx94jkmsl15wl"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.2.3"; sha256="0fj6csbxx6dfcd8fhsiff04cagb2yyg79h8wklqqm0dr7agbfaj9"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FitHiC = derive2 { name="FitHiC"; version="1.22.0"; sha256="0iv14yx3g7shzl8qrjknyxbmiylj51sbd1wzr1ff9lc5shgl55kq"; depends=[data_table fdrtool Rcpp]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.4.0"; sha256="0balsds5mm981cqamdjv3ndq1y9arharisd6f2lrpkzgvwawa645"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.14.0"; sha256="1dwdppgawgc22qryc98p3ibamcn90871hgix1ad0p3zyhpvza9z5"; depends=[ggplot2 tidyr topGO]; }; - FunChIP = derive2 { name="FunChIP"; version="1.22.0"; sha256="1cc6yxizb8jxfin1pl0lxf6x0yxwvi0lr1pyg1v8a0842dv3zh1d"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.20.0"; sha256="0mg6c1ygj732dpcqbv3ndh58z66msy7bp1rq95d3inj57ccw5fpf"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.18.0"; sha256="1gpls1wpd4rdhkwwmm81pv06sj2w6ravcsns2rgqaa4sp2pdsb8a"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; - GARS = derive2 { name="GARS"; version="1.16.0"; sha256="1v3ps3v2zsr4p2q5wvxa1wm9mnxkhc2d9sgsz841ld0rbqzw7fjl"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.22.0"; sha256="08xhky97f5x6kakdavzpqdxp053nrjfjr51r4gkfvcv4xj4dypk0"; depends=[glmnet Matrix]; }; - GBScleanR = derive2 { name="GBScleanR"; version="1.0.6"; sha256="01wk8d1kbs7x26i2anxh8pjsvc9arr6b64qy4zzr32kwmlj0yvg7"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; - GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; - GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; }; - GCSscore = derive2 { name="GCSscore"; version="1.10.0"; sha256="0cdhv2awcyg95cjwq088r9rsbmdi3vqnlnh0c74h7k2gjldl9r24"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.16.6"; sha256="0zkw0g711g1w0dp75qwa3cfk3d8dfsp6v4f122j88xc1cjf5rarv"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.16.0"; sha256="1j6a0xlrx4cjqsfcm1k1vapddi5v2q5h05b617i839l9cp0ggd1s"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.22.0"; sha256="0vxpncvnqhgggy0is4lvgf29lgh307jkgz4zjjspdq9ds6y40l1i"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.26.0"; sha256="1qn3x6j9lvyx130sx9wg7bxvacwbwp87x75inpxx9llc00p7sl9c"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.18.0"; sha256="0h3vnpnznb9rda8gfwp4cnd2mqsvs1vzmfx90dchn5pqaphz1k2l"; depends=[dplyr reshape2]; }; - GEOexplorer = derive2 { name="GEOexplorer"; version="1.2.0"; sha256="00lnrp07nv8hia77riy3p10iq5rsyjzlrq93l4ql6m2cxv2p4qdg"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.4.0"; sha256="05s35fbzi2w3c4y11h144mf70i0rhbx1jwdz70ldyfa0ld3hbh89"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.58.0"; sha256="12x2aabm2m1rv4s91h6vyq5q36i4i15lgh3bya3bjm80bfmxkfm3"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.64.2"; sha256="1cvkvq2haz831qi8w0gd3ayvxfxsl0z5klhki4gkfi9xqdv1gi9x"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.48.0"; sha256="0ml72djmli9qvq2c75nqq00q31lqcb64v8532vw4fk57cclmf76d"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.40.0"; sha256="0df1jm69krsr8y315mx93hjnmf4qpvnhbm0iz4j4920ra7g8wdp7"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.8.0"; sha256="08p3k5dfkc2la5j99wbwswd7zhc4i4aynkmr3x561h6p59n31hnk"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.14.0"; sha256="1v8f3slcx08kcba13aq68y4lmdprz71h33cm7masrcxs2iz839c9"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.20.0"; sha256="1qpw6fwa15p6ccylb4hjfwjypy0waywp1yiwq3fwhdazg0pbzr9h"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.60.0"; sha256="02amcicn07ywgmd4dkinw0wq6vi0yx45m0naycfgc6bszh78a05z"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.24.0"; sha256="0bkz9pj07gn5a2gfci0zl1932mkzcmm5cv9axaa0f8yavn4vy4i5"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.12.0"; sha256="1s09cyhhfbi5p9bnp1wgpl94js65sp63z33bf795mm6jv460ibyy"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.22.0"; sha256="1hp15pzd0m0g9f8kglyfsgjqxnvxcmm9022xnsrkzfvmj2yw14vd"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.34.0"; sha256="0nl5fk7nxmha9sp7phmj9r6mxvg5v0p8l7pblrb34m40h3f27d96"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.32.0"; sha256="0hnwqsa7pgxnmqrcrbn78mr647rzjs004xx2x5bbi9nbpirr04j9"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.30.0"; sha256="164vr6hff42gym2rak37xnpz23d4ga20p67jxzw96bnynnzgaaxw"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.16.0"; sha256="02vdfsjrqp0m06mfbspwkxjyqxfca0w1idgygpi1a9i5m4fqhwpk"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.22.0"; sha256="04xgfmazi557r5qr9ginbfsqwvccpw7kds7kyvh6xxcy5kgnlbf0"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.62.0"; sha256="121ly9vifarg8y7mc468571bbs0xv4sx6sflm5zcdqf0p83yvjrm"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.32.0"; sha256="0wkal7hsfz9msf8j7975vkqqzv5x681c891zj1b4mfk6dvn5xffa"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.8.0"; sha256="0z4qh88x7gvm02186mnl6bkhg1f5swqci30gzj27lj1kx700jsf3"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.48.0"; sha256="09c6d8hcawc6ky0pjhvc5yvd7fj1a1bl8n4hcw72nyfgbf20hygi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRaNIE = derive2 { name="GRaNIE"; version="1.0.7"; sha256="1lvc78fbhbp4i6ix4bdmmlnzwma2n5w0v3099p1nghzwcl0jx7z2"; depends=[BiocFileCache BiocManager BiocParallel Biostrings checkmate circlize colorspace ComplexHeatmap csaw data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges limma magrittr Matrix matrixStats patchwork progress purrr RColorBrewer readr reshape2 rlang robust S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect tidyverse topGO viridis]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.22.0"; sha256="1qz2bj8wnp14mw5zm2207xk3zj98s2gk16fvhdzpy21y07irrx3j"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.20.0"; sha256="16bra2nz4i4f40x2gfcky7ggz3alpvhwcbilv48r7nv4p6b31j8i"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.24.0"; sha256="0p2k8k05283h7ls1aj5457ycqq46mxjjx7pmjijmj0kfzcmnqyv2"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.30.0"; sha256="0b71l3hlg5zxf6y3yffbl785pprh66z89xx9gz9s2vb5rqkbqydb"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.26.0"; sha256="0vrgzp4rc8y0amzjgqv3l77jqpbjgc5qdpijpqfm870fcjp1iqvi"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.58.0"; sha256="1qhvgyg392fd98h2qnmfmhg7mil5hp9cy3qmkqs4x1bhpv1m978g"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.16.0"; sha256="19yvv82c2fvmjzv4rrfv19svsj2dm3pkvg78zjk7vs64y81ph5d7"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.56.0"; sha256="1ybfd6b79bqv3rk986456y9hqmjkgibmpv43q9ivxqz1acyvj6v0"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.6.0"; sha256="19r923086qr400f4p2kfn4ii09q2k2pqg9k4r035b9afqgd0x91a"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.44.0"; sha256="0z79l6m3z0ib9iy24hpiscmxasrx33y6swrdg0k1z48sdhy0gsf1"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.30.0"; sha256="0g0j4bh9h8qvki84gcp2s6yn2hhc38219jzihmf9jpjl66k74gs0"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.44.5"; sha256="09szzrgyjcx33yh2327s8w4xaarvavajsb19jfdgdxc1bs5yhzl9"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.6.0"; sha256="1wi6ww5rycc2zxhnm83amzrh7ffripmiqklcmxisv6jqgr64adp3"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.26.0"; sha256="1ar20zr3mjfqs7fvd323mdrxylvsjazn6si4d8ilgbpq4xhdv58a"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.6.0"; sha256="01bj6gh95p95imyvvzjylnw42rcrzw3x8z0q8x2cx42zqf45dqc1"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; - GWASTools = derive2 { name="GWASTools"; version="1.42.1"; sha256="0a9k2dsaxp5szqm71qd3l5jq0aqnbgp7w5n8d7qiywlkfw4l8lwm"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.6.0"; sha256="10cs5csg6dwqajsk461flq55siz6jfd90w5cyqdhyq4mcbv6zp1x"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.16.0"; sha256="1wrx3rp1r4fjq8c56dk40izawzpsrmkrrdvivi67arx5pdjhjz30"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenProSeq = derive2 { name="GenProSeq"; version="1.0.0"; sha256="0vmsjpdkfvq28bihmf47a2ihlfxzadjr5vm6clh25016rz0086pp"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; - GenVisR = derive2 { name="GenVisR"; version="1.28.0"; sha256="1cr9f044vj4qfb050nsbnnr9bvz12p3fzvnag54na3j2yinvsq6c"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAccord = derive2 { name="GeneAccord"; version="1.14.0"; sha256="0lpw3fxfwfhnymivvjh6na9ssqs7268543kpf5wximfcm7wy9mzm"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.26.0"; sha256="0dw5r5zaxp0y2g626gsvwcqcaqf7lz8ajnca6n6k6krbng7nqpf2"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.42.0"; sha256="0jyxvsqm8gswbv2aky18hz2lc75l2l12yidhkqhv0c0rr3kxqvsv"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.46.0"; sha256="1xb7m5rzgycbp1w1wa022ksn5fskkvyh38ndg7a11nfk0lq1mxiw"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.22.0"; sha256="1ccxwdjyk567i78xda40ycnpa9lnln9zc8r9k5njwizj9wma1fzy"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.68.0"; sha256="1y0d65h40s68gmnw680a2ac1g6kmfh4zbgzff1dblh1k4lvgzir2"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.38.0"; sha256="0yz0p9q3km71lji12p0bqa7zz6rcbrmw2c62im0bnrxmraw1l498"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.32.0"; sha256="0nqwa3x9q1hl9nm06hqzzrn00rirc9kj6s320csjlf7x6rcidr93"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.52.0"; sha256="0qgfjlahc93ijsz7m2i11xmkkkwnzddf4mi17l2cq6a14ykdlww5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.40.0"; sha256="19q88wy0gmyyvc9ddq7dm6mqy5zh8kqpad1dz5ymvzq8663cldqa"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.16.0"; sha256="1ciflsp0i96ljh4xz1b1bbf6za4hd2swnykmp0wvgayxxcwxdwjv"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="2.0.2"; sha256="08mq482px35a1b3cz64h8hlw2s4cabyddb1ly5hzbbgcqq9h18p3"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.58.0"; sha256="0vbkbjyb9r5gsbkn3c28y3bicmn82r1bfsah6ww6pf539xzipbzj"; depends=[gdata genetics MASS]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.32.4"; sha256="0z2bqr0zrl3r2kcqs72ny8p1psf8w1sgbr7qjjknxdv1qp8m2j7v"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.32.1"; sha256="09pg7822camyav5zvlpv360sj5gz8q1bhk528qa2da2qsz74a3cz"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.20.3"; sha256="09qjy79wvbahwyb2avvagp3pp4d2v3qr2balsjvg75g8j5fsy50f"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.4.6"; sha256="05q36bbcg2acr93bzcmd6vfxl442ig7rk0d0kmzhp33fbrrz8k3a"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.48.4"; sha256="15kn5lmdqp7rsh2zlixj7ashsqnv50bs36hapw36qbaz9vgvim4v"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.32.1"; sha256="06ycfna26klx27vvsnlpgv46bymfrc8z0zkpag7nm4m23153ivkz"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.0.0"; sha256="064mvbgrhf098pyqabqdi70yskri5pa3fd1yylzwmabx3g7wvsw8"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.30.0"; sha256="0aph1hja5vfprxs3jl4zd1inhvih6m3v1p3jkm6w7xpj3jzvmgbx"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.10.0"; sha256="1dhrlibbs41rl97rspnn4sc77ic5rv7l23vgm4qmgq37lv1crpdk"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.48.0"; sha256="088rv1aclwq265pdg4hmks73nl0125vk0vigyi44n3djkrdx48yn"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.8.2"; sha256="12rcxw69an1d5q7ar58xy8s871l47imw2nm08j054ivxslx8597j"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.4.0"; sha256="09hfb3j1v4b2as4vwy87h5jqi4kzz179k4lzvw4csr0yvs80f3ks"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.30.0"; sha256="0mjw7vvw28lgb7yrsymnixambnwasq79hfbcc3rw24c0srad6hsw"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeoDiff = derive2 { name="GeoDiff"; version="1.2.0"; sha256="0s0bcx6j7varibkv5gwf29kld8znzz0dlbsrip6qxg5w23wwdhcz"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; - GeomxTools = derive2 { name="GeomxTools"; version="3.0.1"; sha256="1jj4jsh4z514lkdzd7isfhsg54lr6fkvqacdmizyvbcpiiccgw6v"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.12.0"; sha256="15s1qm5519ijr4h2krbfgix1768yb4jjhx9py57px6v6mwg7ahks"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.6.0"; sha256="1k17ay09vhb2hakg1vrgvpp1zliavlj7cdkxaal162bc3v8pyvyz"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.14.0"; sha256="01w50kl0cfif8d773i4xx70p8wp337fkx6kclxgvrgd7bmv286v4"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.10.0"; sha256="02h92xlziqjva283crbgjlffii00bsmbldknzsj38fksjp43dih9"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.68.0"; sha256="1s5qcykfprqwqbhmlp64yxmjaxskwrxgh93j4idzgp71md1k5sf1"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.60.0"; sha256="0spjsqb8rx6si5lshk0drlq1h4h5jgb6bmcwdh0wz9755npz0p8m"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.38.0"; sha256="1qrcxcb68bx1kzpilrd61m14902wl490kmzkjj9bv35w20ln1f3h"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.28.1"; sha256="0w52vwvjarql19bsv40b80yn701qx8c9d0clsjhj85wmzj2p6dhg"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.12.0"; sha256="09grsasnnk7rmlzjh4lhas9r5spzcsrvmdqj6fx1dk22sckcqahh"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.40.1"; sha256="0as3sxhv21bqqrpvafcqim7798hhkzj3q40hy1rqyhv2lhj4rbvi"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.24.2"; sha256="1dzx5463ig3ag72a47slc4jbq5id11w77cj0zgzr85h0dbxklrr9"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.30.0"; sha256="084bx1qwlibpd6xna29sb9nfksxa3z4jiz4l3fhkl8n5ww6k33pq"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.54.0"; sha256="1sk3433d90msi6g0rpvsj8fdvr7isqs7gna409fcya2n4dlgmbs1"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.68.0"; sha256="1hq6i9rjrlis4fmi6zc06d37562vvv0sbsm4mihyrfmmn87k06wq"; depends=[Biobase]; }; - HGC = derive2 { name="HGC"; version="1.4.0"; sha256="1mm6drdslj7f23p9mzy0nlmyvmqafad9hm7nvskm6fv4jwbpg4wv"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.32.0"; sha256="0a9gm7r2f1rfqzc5bviz3z4bfgl5lfzdwjlrc1dca2s6qsb5z01l"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.8.0"; sha256="0y69bc5557sijzczh2viflxg6wgy380a8jk7d1cqgmqcaqabwzbv"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.14.0"; sha256="0gxaki4si2brjjns1fmhkgbrxv6kr5wcrhxx3083cnhdvllpqmzi"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.38.0"; sha256="0hpb42wxsxyvl2p7l9ml2fnr30fvba54hc8zrl6rqaf9qdhw4c3x"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.6.0"; sha256="1hp5y6ws0zg3qckd2bhhbpcqpzrlggljphqi2xc9fmjpbk2h0hbg"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.14.0"; sha256="0w69qs669l36n287n3dqz3ym81m5ww3191xd6ixrxz4c4jph16d5"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HPiP = derive2 { name="HPiP"; version="1.2.0"; sha256="19pay1091q5w0kmcx1f2843dm1lk3f7p2nd9ffvgynxg84k873i8"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.36.0"; sha256="0s47sd83ih69r8m7q4llnscwpljbiraam16mwz29jwij5nqlaa1q"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.25.1"; sha256="0g1qkp8h4cmsisvjkv8qgm6aq4yifkr9bs1rxzlva0hlxlllg5k8"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.50.0"; sha256="0am98rzwpi3kybq1l27c5qn3n1pg5aqwmh6jq9q0lzbjjin3haqc"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.24.0"; sha256="1rcn9i6mav40c1awxpnrn7lqxqmxhsm1mdgawcvx10xflyy7gqik"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.68.0"; sha256="152gxcngniw14kmminf9fcc0jkvi4dab1j88mp13nv05nmkd7c7l"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.4.0"; sha256="0b1mzxysmrqinp93p587apna8p0llmawblwj93icydqxxm2jkhb1"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.22.0"; sha256="1mmp19gpmpgn3kw9wjgsdc25hf4jfgg9bkjplg2qaf8rvm0mj8ih"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.14.0"; sha256="0zf4mpq1bv7hhylrwnz3ia26mxwjyfx6rr9l9hxcjvm6zxh856dc"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.4.2"; sha256="0psww4sl4m5ynkv53xzyrigxzbypjdhqivg4r64993dlgcdsyi48"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.18.0"; sha256="0bgfa085x3w8g005iwnydv1c5i2sz12h5pksmki3427im6khycmr"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; - HiLDA = derive2 { name="HiLDA"; version="1.10.0"; sha256="0rf96isx2qwy7fs8y43bamfcdypiwbh5gggxqmdwdgkk0zhcpnls"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.40.0"; sha256="1pkshlrra26cad0hf8a54brlkazni6rsvrplh36azxapx5rpps4s"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.26.0"; sha256="0ay05dh8n98v1fasj9dw195vi24wry40xnzzcf57wfvxrn18ps34"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.54.0"; sha256="0vci86nzwynzv95v90c48nkrwnf55z3a8ah2k6q5d17v8jd9p9b5"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.54.0"; sha256="19x99ah99a7fh1h7lhpxjs0ibnh7bcy6ri250clvv54pv2znindi"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.4.0"; sha256="1xixk2vm9ipm9rpdhcvs66gar2f7wlnx72pwfmlr0s75v6d5y0a5"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.12.0"; sha256="0b76awzcz8nf6hpipfiylz2rn40zi443wld4v087baljb7y41wyr"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.40.0"; sha256="0wf002nrfr5ndkr2am555ifnx39iwygd5i2294z84vbfpxdi39rs"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.24.0"; sha256="1gsfy75dz7xh16z844llcmjnp0a0ridszmrbbv2bdaa43na5msmf"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.6.0"; sha256="091z51j8whfg02g2lbfrjm53vcyncrc8v6g2agkr7p8ji2ms09la"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.20.0"; sha256="07gb5k0xjwpq74ziknl3y9448591z6cxc7yza16x3vaz3927y7nz"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.16.0"; sha256="1fg0vcckibrn59lcjvp3bjx1bzzvgl8wvbwj65zs22bkaw0g14h5"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.32.0"; sha256="09x3bnwdjrs3p3mkafln4fxxf1v4yglffwsj7bypfl04d4nqvsn6"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.10.0"; sha256="09d694i2rjgaw4f3jsm41x0b1jhzxizbnvi9vvr8sd535cgzgczz"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.32.0"; sha256="0zszizdpb4b3lwp9561a1rq415vxns3w5dky2g1121p7b0pn3wdq"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.26.0"; sha256="0jx887vhxwd8zlqajr9czvn9nx88ryyxlnl58hxrlajjpcjkz9ax"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - IONiseR = derive2 { name="IONiseR"; version="2.20.0"; sha256="0cgx1dcfh617l9vr4r3ky8w7f0snl0vpavfd9n1h5n68p0p42dwi"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.22.1"; sha256="00wzavqw8qldwqsj46z97wi32yxacwf64xjywr2ck6kjicz4d245"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRISFGM = derive2 { name="IRISFGM"; version="1.4.0"; sha256="13c9xk3gmqg0chzhmd6kj9fwmc11mc2j3wqin5202dkkn7x9b170"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; - IRanges = derive2 { name="IRanges"; version="2.30.1"; sha256="1r01c9lczkchgd9hbxxd6wrd5avhy52mfqjck7l9avjq1jimvzv3"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.6.2"; sha256="10arh47m7pg81rry1hb4pdfd0b5rdcj81lz9i32xlxanh3sp8kjv"; depends=[BiocParallel bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.24.0"; sha256="13cgy5hr4y6l3fkq2fx43wm4aypn5k3wp159kdqgp00lywd7pzxp"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.56.0"; sha256="150kfwhf47ipr2aql5cxli2hhs3cmgcya9aag0il41xy0wgc96k5"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.16.0"; sha256="1flsha57b7p2rnnrg4vs9dpghr9kf6g92r0xng3rrmxzb9i88kzw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.20.0"; sha256="0yqgvyybfqpp4s44if323ipvxl8mpnjbsfvibbmhq108radzv488"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.68.0"; sha256="0jnbfv7js8bw0ginql90krrpk0p54whj9igw0zk3jc45jqvj2vyc"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.32.0"; sha256="1wwh3ifdijhpm58lw7cmnx084xwfxnc7i0206w8rhrjnvnq6ljh3"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.10.0"; sha256="08rm56fniyg6lp8psmh0z6f2hvngvpy0q8fzcxxsizff87mqf0hq"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.24.0"; sha256="12hk0bq0fgna8dbahgc04lm9bgv2jp8lh1qirjs5x45gjz896mbz"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.4.0"; sha256="17ndjhf0kngpp7l48xbzc4p10h8zrmk76kjf05dw6ifpg50plqip"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.16.0"; sha256="1xjzml66a1sfqi0lai2jflfxwfc4k6n4cbram50sn21h7lkq330k"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.6.0"; sha256="0rna7pgsgq4amjmq91y40gxrqv0rw3vc1rfk5g5bq2ki3lqqvi0s"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.20.0"; sha256="10rnm2va657zqcmbrd2f19ypmm0s8kyljy0b22kx8qn0zr7zcis3"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="2.2.0"; sha256="136hcjhn1mgvmvxqfmmwrclqm4qrfkhwfkkcn008ga9i01s94yvp"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.18.0"; sha256="09qsh1ha2f5lipm3hnjpq7ra5xx2fqll9jkkq20w9xqn2b8a59mr"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.24.0"; sha256="0qjimx25jvm8siq8hmlbf2z6mknzpbq945p06fsj826k57bpcsm5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.4.0"; sha256="13pij41vhafipf96069hv6qkja75vkdxj5iicpbq409d8sdghbj2"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.18.0"; sha256="0w8zvlx4il5fh9fczfabac9mvzvxbrskn7pf0cc49s5ja8267vpq"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.14.0"; sha256="1g4xv5x9g5ijjq80k8jswil7crhmwqv2j29rialx9z980nvkphyr"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.12.0"; sha256="10ysfzhycawlhm6zxxk1flwgz9si09vxv4hjygmjp2nn23py4ivm"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.18.0"; sha256="0n1gb9azxa1mxpsqvw3i3kf72f45nyjj1kgwwrzhd88n3g63lvkd"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.4.0"; sha256="03rlkz6sblc6x2g1qy2n3di4gpribhxyivm2ddqsxzlm74f24mc1"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.54.0"; sha256="1qw4ag113rkg6lv556m0wv5c89r86f9sw1jzdg6mx4vrprnl64lv"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.36.3"; sha256="0lzb3z6pzm323q70931b7220ygml7jb4g81dybwa79wqiqz15pni"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.56.0"; sha256="15pq040pcg8hr18xixmjp59xb7mgvygjv6kisqk8yv99l1611ndx"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.22.0"; sha256="1lrs6nqsfsafnvkyj46851r7m6b10dq8f6jfikqyhbv4cisw4kln"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.14.0"; sha256="1703kfmgp52v6yd5pjj8d7s8j725xq4xgrzsi015jgrka76q1860"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.10.2"; sha256="0lvxkn2jcyyfwiz9l670dpb6fiyffp0dgsyy9dl5ja7vwrphkv45"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="2.0.0"; sha256="0msm6hw4jkhgi4idz8xd8xjnywhz9sp5bh9xkwamc7854nfq5bqw"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes sortable stringi stringr SummarizedExperiment tidyr]; }; - LBE = derive2 { name="LBE"; version="1.64.0"; sha256="1zlz3z9pin4aikdqwzs8p1y4mmkmjaj28hghv55lp2ygfy3z63y5"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.8.0"; sha256="0x5pwlk24f3mksd1wzgb09majsln4v10j54np1jlvydgcrd5pzf0"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.22.0"; sha256="0scjl3g6bw3mh3ba7p4wa88vpa91msb6sridx0dn7v1vyi4c46q9"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.26.0"; sha256="142xwvx7bz5c8qg2kyi336bhrvvvmz8p5jjccciay59ywrwj6glq"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.70.0"; sha256="03h2ipcj8zndj5rz1b9cwrdlxkxy0n7jalxmd75bwv3fyw82zdyq"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.56.0"; sha256="0w33bk7f0cbs8s7ay0q5h7khkxrg3i3h6cbpdz80r7p175rzn430"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.6.0"; sha256="03h7dp2s2salrydvdwf323bhipfalhz8y59da44cjqbccmvq6l7r"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.4.0"; sha256="0yl32x1rx195csgv2sr3skw1089l5sb1k2da4x4shjjyljcvbj3y"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.30.0"; sha256="17yqi84qmcwyg01swqzilinrjnlk8fq5x673nvz0l9cjbkq8nya3"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LinTInd = derive2 { name="LinTInd"; version="1.0.0"; sha256="1bj2j8hgs8rdk304i1i16xf6qwglyhxpcbw63zsmhqp4d1yw490g"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.16.0"; sha256="0h5s52iyfqnv6wrwb13qzv18dr2nrvxp359vxs8yrvynwl2ffhz5"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.10.0"; sha256="0f2qqvas1nvj5j22ihclxiv4sb0k7jyyygcn4bfrxv3pd29nhq47"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.20.0"; sha256="1002lllgns5klv3q2wsikkbypa2bafpka7a8mri0y5bfxncfr2zb"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.50.0"; sha256="123qlv58y4vhsjnqgxs0w8zylnvib0hjb3jlg5cl74xzdb2gfl0f"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.14.0"; sha256="1rnnvnbpxlvy85fdyz9zxsn4r6j4x8fydblz00jjl3mk9943538j"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LowMACA = derive2 { name="LowMACA"; version="1.26.2"; sha256="0inx7lgywi6687i5kdifmfx8b4q3gbbiz9vn0mlfp8kwhjirb551"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.24.0"; sha256="12habp9qw5pi6ylfwraqayxfhmrxx2334gcj0k3c8awgxnb20hc1"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.18.0"; sha256="120gd7gkgc98d1l6hl2ij799b3jksdnga5iyb44ps9mbc79hl012"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.22.0"; sha256="0h8qj7hwkm007717yv2j6bx5ri0zi71yd2bdl45rh68j30qv62ab"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.10.0"; sha256="060ja4q3nh8vl2gmdhdi028kqbk108mgmzmlvi68v3ndlhn535fq"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.4.0"; sha256="1m35zsd20cfj715hxdn0sglr3k6yc18danhi422wx9mqnrig9grh"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.22.0"; sha256="0wv6c1hmpsmzlxbx4vxvb7259ywy15knwkw3k6cdn15sxfkyviaf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.4.0"; sha256="1kgbs5ym43sdgqg1424s7pgz0jchqn19i73srsrl4icbizdig9c7"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.0.0"; sha256="0vcf7p585mw6avvs7rh2ffdhw2j5v9fcppdcp3a8lc99gxz2302m"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; - MAI = derive2 { name="MAI"; version="1.2.0"; sha256="1p2rimkrpg3r0pdd37wcr21lsbysmpvs318r477s0amvnbcqi9ni"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; - MAIT = derive2 { name="MAIT"; version="1.30.0"; sha256="0bhvhnxkhwjs0ilfa4y9a4wpiqg77hfpydfdx7v95fhgnwwcayii"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.68.0"; sha256="1z0222fb2xkyi0wylcvlpzz8gdlh1174jxyv5ihz0wxxa2w07kdf"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.22.0"; sha256="1kmrqxcfzzcs8l33n9qn0vahc6wxq6ks3cjx95vg96maf2qzhzzi"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.30.0"; sha256="1hg8jg898zr0ighg64jzkb513vbjr1a76mc203pgh6h3gmdn56px"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.30.0"; sha256="0kz8brk08d32b1iqp6lrwksfpwwiqbmdgni54pwy36n0n7biir9k"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.50.0"; sha256="1qslgqivsg8hjvyyw59d192jramla88lnx22zixm8jnjs7r4w4fi"; depends=[preprocessCore tcltk2]; }; - MBECS = derive2 { name="MBECS"; version="1.0.0"; sha256="0z9mhqg6f6gylw5q6hi0ll4nv0b5crzwp217i1n05psg8dg7wzi3"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; - MBQN = derive2 { name="MBQN"; version="2.8.0"; sha256="0dml5ysapdmcf6qlv33v69007zj9bgz0gqdj4ywfwcsmjyvscdp6"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.24.0"; sha256="0ydlbn2rh7b83l6fg2qrcr6a2vx2h29mv2ifi59dnybczwx8krx1"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.20.0"; sha256="12j1ghn3gccm6nsjp1faki2ncbxhpirp8bchm42mmqava5j7rgym"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.16.0"; sha256="0hsbw98i88pls8744nj6z6lar4m649jdjgqrh6k692zmh5d8n52a"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.26.0"; sha256="1d1daf2xj3bwvcgwd2dbf27vmw6n5rk1kk4crc61v0dra8j9dsqf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.8.0"; sha256="0s0mbfl1p6w3xpv27wjy6i8gddkr8prc6fhglfmklci791gxmjja"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.10.0"; sha256="02zp4zk2986xajp91rak4pg8vwxp1f78wv3qwjmc8pig5m65a22j"; depends=[e1071 SummarizedExperiment]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.48.0"; sha256="1qxg2a7jqhnbn7zvlvn4i4kjg010ab34afds2sgcsvl4qpqcj9d0"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.56.0"; sha256="0jfqr2bc8v45j38nmk9k03p02imvmrhfbd7b2gj9zcnbj4j3z6rz"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.30.0"; sha256="1qfb969jjm6xyrnq1l108mhjrgzm886aiakiacagsbivjcq7ianf"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.30.0"; sha256="0f0flpv2i6531k4vdkwljpzzljpdsyj32arf56q362vq0zpaf0k9"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.22.0"; sha256="1v9aljss454kjqzrwzgfirqfpi59f36l9jgmfd8zwkljwgi8i6fn"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.20.0"; sha256="0ijf33z9xgqb67zhym0zn7jjfyh8kr7bvhm341b517r5igb311fb"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.34.0"; sha256="0j2bf365ycs5z7vprm247g22cjfsq9g9z7x4h5g90nvkzz7cbx4r"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; - MIRA = derive2 { name="MIRA"; version="1.18.0"; sha256="17wxks9hbyy8hxmv0sfnd3wn1zfq33yy1p3lvbzsgzh1r2sgc2x1"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.76.0"; sha256="179d19kxjipfkc40z15337x1vzqd7vz3gbmr2lw5w7x9l857ngs5"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.44.0"; sha256="169ck10y0md887x0agigbrzsdncd50sxxwrm17iz6qais9adikqa"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.14.0"; sha256="0ajkxa6wm215df6i8y7z9ha68m25p5kg5hzk2ni4v07w6mn3cikj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.10.0"; sha256="1w8ajra7ip9yfmzinvdgxcm1n808saj0shfx0irflmz54a829kfr"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.24.0"; sha256="031d3j2d6rqj5adaflbhq1q40h1573mg44vxk07hg3ky6w55mv82"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.10.3"; sha256="0kg4zwwwbxzzl4cddbcn2ww93z5z17n6d2imw2gfr8jcpzxysd3n"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; - MODA = derive2 { name="MODA"; version="1.22.0"; sha256="1aa5g2zy251q3rpy83c4siyvdnrzw5cb3a136qrxd69z6pfpnkx3"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.6.0"; sha256="1cdx2zgmicn5qa59x794mjcnz9csgmsscl21qd9yhwc5n9fj0zqw"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.6.0"; sha256="1wgpr6ci1hmzl1racszxfvgk95q5x4ca21rxhimimgag1gkk472b"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.8.0"; sha256="1fkmjaja97lnicxd6inwas5hfvpl0nz3my1cryidkc2ycsmslk8s"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.10.0"; sha256="0vvigfn830z4cqgywglk6fd8vxakf68l9k076l5a7c52zq5l2vsl"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.32.0"; sha256="10s0lyga44c1xnpv269sifhir1r208gf5p5ww41y6wp42rnr9shl"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.14.0"; sha256="0pxp5k38fqxx8ncr8v1qv4mnckjyypq8s49h2vb64x7hrdiygvbx"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.4.0"; sha256="0fyh9pqrfjav3ygvjvg90jv3vw81ngsxpgmkdwvdwpzrmqn2ngp9"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSA2dist = derive2 { name="MSA2dist"; version="1.0.0"; sha256="075zq2rdxdjs7a777nxwqm0jm7g6qfvnijfrdrk3pckqg34z83bn"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; - MSPrep = derive2 { name="MSPrep"; version="1.6.0"; sha256="1g0kd405iypvl0vkc190a1mm4gf17pdvk32ij3m23d03pz6qsdpg"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.30.0"; sha256="1yiw95p40nz0pvq7s4i0xg02r9yqmnknak00z4lkw8jij3w3rkkq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.22.0"; sha256="1xzn0k3c2wn6c6gv90hddy3c201sg927342zrw9ig2xap0r053x3"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.4.1"; sha256="0n03spd9a57wqsl3hmz5flsh8ijzgykg2iv7f05n0a7iwrq75ms4"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.6.0"; sha256="01rh07a5ibk3fn7dvmmj4665xki03jvlybv40sa0fzf25z07nsfg"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.4.0"; sha256="177fz522fx2bph66gm945jrg5wvr7cz98n0wbn7ndym85v6dql32"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.2.1"; sha256="1yx686wk5ykl31qq3fxcsvh8bw5hrv3yiqrkc1jngxjph1xzx2bg"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.6.0"; sha256="1zpgisvnnqnp9x1ylzfkhdw2z3d9vfgig560xjl5vwmj3vhix7i3"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.14.0"; sha256="0bgkwgcghdmccza7f4fkza3drjarl3b3prbzq7kf88k7k7zvknzr"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.16.0"; sha256="0nrhqznkg61vmv9g3zly0p26dvkbcf4lqx48yj9k8rbrfkg06bdk"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.10.0"; sha256="09cclwrf2s0ld3cvvs0drkfk8xgq6la9cc9mqn4kjw355zqwb7lp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.4.1"; sha256="1g3vljkfddq95m31r53vcjnk785ikw8ml1clmfii10s66y852c4j"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MVCClass = derive2 { name="MVCClass"; version="1.70.0"; sha256="0apcjlq4i2mg8mlfqgvlcsqkiy51whzid3nd0m830jff0ywgh47g"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.20.0"; sha256="17j82k7nrw8lsvvzlzaq6134gckkrxgff3yi8s4jwlzi1grzgjc7"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.10.0"; sha256="1qw2vmxg5z8lirj2pknfsybn9vhrifqh3j7p2xyhnjsbsfw5ix70"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; - Macarron = derive2 { name="Macarron"; version="1.0.0"; sha256="03mkvs3wwhs3xbyqm62db6x3r8djw57bkmrv1sxvz437khn12szp"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.66.0"; sha256="1gkf6i63933ip5w41ba146d9sa3zxrq212cvk5pbma7mcflb4hdc"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.48.0"; sha256="1pa4mavjbd015cjmjy5kzzzkv60268a5yifzxhrdskjjigg6jd0k"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.62.0"; sha256="0g9izdy3f7h1zmsfbq45ahdz0ak5013rp3vxc4ijb1mpqx8ldd39"; depends=[]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.8.1"; sha256="1liblnpziyyjxzrhdd5d89ilvfqqhbl87h3hsmdm0kwnmc73r37f"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.4.0"; sha256="11d8w1w2vy4wwvyd7wxg65j0jlfwk19ys5q1cfwmizlr048mhnv5"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.28.0"; sha256="1x35yjmgrnp327na3wnj7m42v71kgjhja3c80535042vgj6rilqp"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.32.0"; sha256="07mcs3hj8z8bij09l58805rjff54d5599b12gxli56v2b5lk2ksw"; depends=[AnnotationDbi Biobase RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.68.0"; sha256="165chxcqbklamrrx6c2dmvxf4gj0mbmxy4wa3yxkn8kx9rxazn3f"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.12.0"; sha256="1acf89vy246gzs3xpnl1khc0jp8i7gh503r6f64a5452jpmwmbbh"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.24.0"; sha256="1r2bx5w3xxamdzgnijffqn6rfw69320hk0glrsm9abssnfh1aygc"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.6.0"; sha256="1484x2sbbliiyjfmdx0kl11h24rgjd5xyzl34d3d2q56dgpf8plr"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.26.0"; sha256="09skarxg69c3h0cgabm5rib10w6bkhxb8bjwdr6vsq1snzrw2p0n"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; - MetID = derive2 { name="MetID"; version="1.14.0"; sha256="02i4n39zar5ybzz0l051ik835q4yf4cps7hsv2yyna3misp22gpa"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.14.0"; sha256="01vm4km6xs55nkw7gbvf73c55x0izi4kfc58ppcd5bjgsmwvzw0k"; depends=[BiocParallel bnlearn dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.18.0"; sha256="0l5q6hiz9hjjpd8y255v34487yv7ianfq8rd7py76686l9l82rya"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.16.0"; sha256="1fjggizwmm2db4plqqcfk49rvsm6jy116lb2sbyzvhs3bmp8nrx7"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.10.0"; sha256="0mdjl3vvf4ymc7rg9r08dgq0n0n7wc4lgz6ayjhp049ar0ry8yhr"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; - Metab = derive2 { name="Metab"; version="1.30.0"; sha256="1hy9h8q61did3j3md72gdjsnxv6x7vgkqidaffn8c66xcbc98pw5"; depends=[pander svDialogs xcms]; }; - MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.0.0"; sha256="08xdp7s5c4xb9qhg91mgyb07d21l327bjyqzvrnwbn8ynkqyv3wh"; depends=[BiocGenerics BiocParallel MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.4.0"; sha256="0lvc8hzn0czzrz01hwkkhrsshq5k5nikc5irn6hbi3sv93r2bzka"; depends=[MsCoreUtils]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.26.2"; sha256="1cvzm0dgk09angkdmp27f0nfh0glz8zlljz2zg4gs2ng15virp4n"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.24.0"; sha256="145pm17h164qqj4vhdrgrqqj5j1axls0841c6ikz5yp0l13065ij"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.6.0"; sha256="1133ndj4q6ddmq6rjjljj8f01zrh5rn09pgj6g0yp4yfpymbkj04"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.28.0"; sha256="06cvyic6y1g6j397j9xvsqhjhwlarldxqfg28i00ym6l6hzcad4l"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.30.0"; sha256="02m1f64734akq7fjklxlckxh0jvw6qvkwkcy86fnn4kp06z28vcq"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.26.0"; sha256="1fdsia49km7rha9m05zn37arjdxhvji4hb5zf6s1fapfy9nvlfyy"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.36.0"; sha256="141ms4dy49pvfkvhrkvpffx3wcn68zz2c99cxajhymv7346qi9sz"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.56.0"; sha256="0rz5gpw3p2qcghi1gd3sdxcbwm0f2b4hqdr461wlz0r0dbnnwhh4"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.50.0"; sha256="10z06f0i41yckxvs32hnd6k1q5l4fvdvr27rgjrkk817k14shn59"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.68.0"; sha256="080cc1y32yi046xsj05vppp1l3c2sdyjclw8p439kmakcrf0sigf"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.38.0"; sha256="0w4c41izigparfaddj5ffccxw7v33gc11zh0b1cdyz2hacmw03ly"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.2.0"; sha256="0czli81lqbx1xkhj5yqlixjgszk4whvckhjpw9k70ggcx9svc249"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.8.2"; sha256="1v7drwwn1qflrxi25nllk84xr7v24qypdnq7pz7nkxganfdnw7xh"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.36.1"; sha256="0552rxj4blisxyzrjm59qxmqnrfg9x1kygr6d2knhnzyasprwl5p"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.40.0"; sha256="0409nqlhjnx0l8zcy71zrawjbml1rmjkgch9a87zcc1j2phnpdch"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.0.0"; sha256="0x3xxh54sdlb6dan9rrrg116vfr1q4b0z9fdjaqh52qbwchy1x82"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; - ModCon = derive2 { name="ModCon"; version="1.4.0"; sha256="1av9ragz32ss6y0hh36hc8zldg5qmgz4kxjkgi649v2l2fb5yn8h"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.12.1"; sha256="1854yzhr3k4x72d5ix5c14m6b3hhxlg2pvmyifvqx3j65rbinq37"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.22.0"; sha256="1yigaiychilz0v847vvqwxdgn5gcfxih1nxf7586g0w9g147srd9"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - Motif2Site = derive2 { name="Motif2Site"; version="1.0.0"; sha256="1lrzl082gb2l2y5skmra9kl2rns19xdbxaw5cki3n7831s476kq2"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.38.0"; sha256="1cyfz0l0yvdii3idaiq5w39yzxlzfpifa4v5pv7hdjfjj83a8rbi"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.6.0"; sha256="1z5qlkcgjrj2hhjqh5zirp940brsc92c9ss28f4fq35j2x4zhmx5"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.4.0"; sha256="1jabh2xr27c12628bfsn6jywbygmisaggvkvazaf8qx14xdi5d7c"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.4.0"; sha256="1m06akw50rrpj5h3r78a5c4cbq52j8ni5kkk1fw7221z8j65sy8c"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.0.0"; sha256="0p6df64w9d79i7xzwg19pqwn074slfp2izh7hiflncdxffp412i1"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.2.0"; sha256="1zlgdj7ycf3is9wv5w0fbrzf4w7fh3k21id1s6gwr5zdws9zbhs6"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.8.0"; sha256="077x1zcy27x8akmagjn75j97082cgnahrbfw0qx08q455m5x3xzh"; depends=[clue MASS Rcpp S4Vectors]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.4.0"; sha256="111iqcq4q315pb4j8z427shin9b00p179m2s9h6dd7imvbd68yq3"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - MuData = derive2 { name="MuData"; version="1.0.0"; sha256="11plrz8mfaj1nrw6igxxk6hmrhnxyfs7cw3bmj3f1fg6sa9nr76j"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.46.0"; sha256="1fs3wl9x7ww6q15ichi3jxfjvafsa2vdghds948vwwn9jpv79bhc"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.22.0"; sha256="1wnp52l9vifxn1wzqgndzp9b6ih0s1cflxx1fhw32k32d05cw9q1"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.6.0"; sha256="028jc5kr84qi9m38g6xqf7cizif2qzg2j4ypvyav7syqb9n0927s"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.24.0"; sha256="0rfs6jkzh1i4mj1pgfk4lwzmcl8pcwizra3q3282x3d8h2g98qnf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.18.0"; sha256="1cdkkspmwn67d685kgna8fr9w3mqrzg6qbv6vzr81knrwmhgxp1z"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.4.5"; sha256="14c8gx5pjppf7z0dcwdrg6cmbwg7k7k4782a13v47xiwhpxszxd2"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.6.0"; sha256="113b2hrc0n47qz144xhky93jcm6qh6flzadq5y0plga5jrz0rnwg"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.20.0"; sha256="0ynwf5ij694a46qa2fl4xvvxalh8a9mh6k0gxd3dfbi692lm6ihv"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.12.0"; sha256="0rgyhijlv7knnb5z2zswxdicyblrxrnyliw1hlppdwsjwjyd3ixj"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NBSplice = derive2 { name="NBSplice"; version="1.14.0"; sha256="1hkcjn1icc6rmg13gnkya6xsmxa71pggdc9fzg8i47bs4cw0y6fb"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.44.0"; sha256="15srh42yrax35kkxiansx9aabraifyh70dxv17fg0vkf9pdndxic"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.40.0"; sha256="0ah6adlhv4254jkssinn2ik8n811hd1nw85bnzqk2kwhl49nrk27"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.8.0"; sha256="1c9zi2a3jki589brg09hzmlzqxzlnq2xwd1674v0vrc70d99ybs9"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.46.0"; sha256="1nqf9nm86lirwrzn6mipj9y7j9zi2jl4675y66k92pvdh0cvcyxx"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="2.2.0"; sha256="0qxk3zhpd5axyzh5sa1dvvls386dzjmas2xkf0gpkgjyq4c7p2l1"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 glue limma patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.26.0"; sha256="0kqhdcqaikvrnfnw24m0sk569674zv3rvq345ysnmgyhj7xw3vpv"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.4.0"; sha256="19ah6rlqahkrb02zm2hrbdkz4z7rdpgzg6rm77q5pras9q6r75c7"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.28.0"; sha256="1vjhxzi4d66kmsm22dwbzq9w5i7y7ldfh41krb2755q23f7pd4rs"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NanoTube = derive2 { name="NanoTube"; version="1.2.0"; sha256="0f50xb155dwxkzvirqhz1l4iqbs8m6qp6klihjlww12yhv967b67"; depends=[Biobase fgsea ggplot2 limma reshape]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.6.0"; sha256="0i37bsvppfn2djivg7hnvpjxnw0h42cxa31590w18c0mjgy7a553"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.14.0"; sha256="0s0aqnd91jylkkcrwm00dmvfd25fyfzdb7n0y0kbnc8d5m8njqkq"; depends=[graph]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.32.0"; sha256="10rgiy57ifmvz0m7z35q0xighxj4wnb0gvak45s249wagishppji"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.36.0"; sha256="1vc4qnjr1qwcws3z5a665y790f5nw4ipv6ld5lzr5vdq09sxd5gr"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NeuCA = derive2 { name="NeuCA"; version="1.2.0"; sha256="0x2q7la9b3nfwlca0vnrkgankwpsrch2jhglrjn7qvnmc1zlk99p"; depends=[e1071 keras limma SingleCellExperiment]; }; - NewWave = derive2 { name="NewWave"; version="1.6.0"; sha256="1k4zyvylkidnkkqgjcqk1w43sx93ss86h6bsa62h7qa9186wxivb"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.8.0"; sha256="17awsr3l50p4isfpmvw1v6mk8lygc8xrhwdxgqp1icbng5i620j2"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.14.0"; sha256="13z5vgnmx6d85ygb1hj3s24mq4jcnfhx6pgigi9ha73p8rimixs8"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.42.0"; sha256="1jrif7cqippczyzf3nszbwxn0a58fvlmkcwb9as0ymv9qvh372vx"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.4.0"; sha256="0gxanqk1xarjgnczll3fj48hx0b7iizkixy8z94d3q28y5zcqvfz"; depends=[]; }; - NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.2.1"; sha256="1mjd09ywdsmzn46qgh3gzalvid3d9b6wajwkj8siibx7rpmc0rwz"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - OCplus = derive2 { name="OCplus"; version="1.70.0"; sha256="0smrb7k510x19pgpk53xl6c8gc8bccasg6d461jwzblx01mm4l2x"; depends=[akima multtest]; }; - ODER = derive2 { name="ODER"; version="1.2.0"; sha256="1vj3l4032sbjmbi508lzhl41gr3wpyma2ch8fm7arv5csksnn20s"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; - OGRE = derive2 { name="OGRE"; version="1.0.0"; sha256="1lm6hqi9lc5xpdgbvwcjzhcjw7qp2ympi7w17s90mmki0g36rf6x"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; - OLIN = derive2 { name="OLIN"; version="1.74.1"; sha256="0yv767qf9h6d9hyzlpwq2y5l874gyfn9mvrs8m5kjvzspnm6sisk"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.70.0"; sha256="0pdnxp9i08faljafy91kxg7xiv9b2fh3k5c3gqdfrvwggx3d839x"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.14.0"; sha256="0fldppwhjijw53s6q44g92n59pfmlz5049qsmna7nzqdh06l8wh6"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.18.0"; sha256="1k4qfbg29lll9hpkzbcbhfipyjn4rdpfyhm2wmr8a9jcp04fpl43"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.4.0"; sha256="1381knb35njc4dvbdr9jbkmyfyc87aacvham3ljmdq7llis0zz7b"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.16.6"; sha256="0yiby6z7bx5n7p32nz8yhv630m3laawq07ck11lp6vw0sn9dg6s1"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.44.0"; sha256="1hd1qmxbsqr1x1k8iihji48n5dqqg0zpk0ccvgaq2qkdkf9ayp06"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.46.0"; sha256="1s41amahlqpb5gffmxd4rgdc1wwdjfzsr3jikv7flbb48965rjin"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.14.0"; sha256="0app3h20d76nrrrm2yc856fsz6wvjm3rl0irlr8vfb85qws7zrfi"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.12.0"; sha256="19z51p11g7a3bdr8ipq1pq7006z69n5qbfpj6xg50jbqv6vl7j6i"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.12.0"; sha256="1ydpfdfa6gx2ca5damy5l806i9wjvpphz8wjzfbb3ijgza0dwl15"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.34.0"; sha256="0644xcyk0li39xcyldqy927k06q6p6b8y07s3wl75dmd8gqwgvdp"; depends=[GenomicRanges]; }; - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.12.0"; sha256="125ijszmi6igsxhdg4kmgkc1sbsvsqk6ybqab73d1ly17w612z5q"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; - Omixer = derive2 { name="Omixer"; version="1.6.0"; sha256="12avwqrb27ljish8xk4gryjisa6zslx8b977k2dmgp19wm7f2f9x"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.4.7"; sha256="1042hif90kcq8vf0qmqkkhmx014ammg5m7j96mxkd139nrdc6hzs"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown stringr tibble tidyr tidyselect withr xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.24.0"; sha256="02s6y5p1ncmlbaqf4fmgkvkbf913d6czz3gd9dqfwblsycxy2cxp"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="3.4.0"; sha256="0ixlyrj7112rn2dnrfx226kqxfsisi2rccan9rxfcz1l1slkjvwk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.8.0"; sha256="08r2id3f6gx5s1va4gr6m191c9y44m2c6s5lbxr8xhrnpi4c61p0"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.68.0"; sha256="15085hiyqn5ci5ahc674hp1j2lszdm6gm8acs1b87rg6pp5zjl4q"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.24.0"; sha256="0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.38.1"; sha256="0mxnxj8x4hc21psz39mf7qwvh1fsn6qyjgl5qffk1xxmasf69619"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.26.0"; sha256="0rbz82k96k7d8nrbcr8mnz24kq8x95yw7m55vg64i66gm5gks168"; depends=[BiocParallel cluster EBSeq testthat]; }; - PAA = derive2 { name="PAA"; version="1.30.0"; sha256="0nq79hwinz95f0rifpk18r26vfvymns8dvib0mx4jjd13k75xgzz"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.38.0"; sha256="156w598w39gf1mc4jm0p7c7hip4vlsms7jvb3dj5h789bgr0whnq"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.12.0"; sha256="1p0wyxdbhcv88x0yrg03z1ml4qx6j7544z1xpgmz1i6sxp8k18mk"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.42.0"; sha256="1g3165x4zgrw0x3yacq25k9jvfnad0yi1zbkmqxccivgnxh572ah"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.12.0"; sha256="14kv16nwgpdb7sqx6ba41pkdxqv2vpsfn6d8fwv24c7iihl8vac9"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.24.0"; sha256="1c4rwima7jzk18ib370rnyxraknzhkpil2jh2q22qhj5sgrnkpcx"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.8.0"; sha256="03s4dh008fys2rrcpzanc0892p63f6jyyvzc9m42jbi1dlkyx26v"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.4.0"; sha256="1psnpjii3a2hv6nrlzxn4xb5180n6wwylv0csx5akgbn3mdqwm8n"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.32.0"; sha256="17lhbcq9pn9zi86vpv4b6ywj91aas4cyj17qv161jb093yfx8vwq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PERFect = derive2 { name="PERFect"; version="1.10.0"; sha256="036bvk3bbrpvg8dzikw2di76k9vmdd7i1x0hfdr24l4wdq81jaa6"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; - PFP = derive2 { name="PFP"; version="1.4.0"; sha256="1dglmiq24gmnw5lhi509d1f5w7iabgiyndr36cz7j9wzqrxnzf09"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; - PICS = derive2 { name="PICS"; version="2.40.0"; sha256="04hysyaikw0dl2visnhyzvj21k6gamzsh5awlrgczaqcpxh5j7gf"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.40.0"; sha256="0x75lq8igf5ppdbr7vs672cs6qi15wxrh4v5ir3qsyfv96n3i9dl"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.56.0"; sha256="07s2xgz733zr3a7z3nzvb3iimb2pb1xpixp8xwmyzi624ndms0v3"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.6.0"; sha256="1jd1k0kvxkinnd74kcm6yhihfal4d1b17zpwjg3m3492x2hg79dd"; depends=[broom caret ComplexHeatmap dplyr e1071 ggplot2 ggrepel glasso glmnet impute knitr limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.4.0"; sha256="071bvywmnjc08yrs912m7cfb0s9rf8rvsqyg0dnqsyh16cyc4nxw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.22.0"; sha256="0y7wagkskw8m22bq7sd99hqc1zn583lljqddncz2kcd8x57pims2"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.42.0"; sha256="10vl8d57x3hyn3145nyi2jg3fyb8xjhbgiica8fy90x6759avaqg"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.48.0"; sha256="0pic8mvlv87hz9cmscr74vaxg4wnlsgmxlybhy4xnyzidg2cadyi"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.28.0"; sha256="01frrjg3rwg2vwsg7hq27kp4k7in1y0fckz9xdfv0b0737ps7j1y"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.18.0"; sha256="1y2n16gnmqfp187sylh7v0fvsd4p9ij773ngviv57idwg9nrb8a1"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.72.0"; sha256="03ppx9zm9mvqb5r1mkrr3pxids8nllw2phqzpsb3bmz1x0yab4nh"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.30.0"; sha256="0wdljlx7jvq78g9qp330ccqld4n9ilaaykqh527lljzc8p5vvbjx"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PSMatch = derive2 { name="PSMatch"; version="1.0.0"; sha256="027r2r70n9v54m6kww6bzaqvf7ahn42vh7fdbbb4m6xzbl62frmq"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.32.0"; sha256="031j563jcaakiasx1r8aflhqm0vq7j5628f9bv4kkyi5rhr3aix9"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanomiR = derive2 { name="PanomiR"; version="1.0.2"; sha256="14cmhsns15620ggqp41hl1dahanvqdlydxgr1aysq0h1145yhw31"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.26.0"; sha256="0csqciqavnamyhsf7hx5c6x3ranr1h8wskzz09hf7rw65gxbn6jp"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.36.0"; sha256="1xbwzvbnjgxby7xwgpl20qnx172lpzhm5z8rm3q1n3ww0n4z7pfk"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.22.0"; sha256="1f01vrncrw50jcvaivgqpjyc6h0ccphzifcw1aq03w39nrw55mz9"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.6.0"; sha256="1b2jhph8nhx9iqia6cbs84aaz7srm7fchn7r0d55fmfnzg5cdr7z"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.14.0"; sha256="04q4xminxkqzc88dqyrpddzdmcnj1n4ssspk3wnraplwrxhg1kcx"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.4.0"; sha256="06fc0h2jn2v6n921rmxb37rdkk60v9il9x32w1ky2n5xaiqhx3yl"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="3.0.2"; sha256="16mpqz4amzydwihniwz7ivj8z9lb0z9rmldk3j4f2f8gy49l63pi"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.32.0"; sha256="1g8g7452vkl06vphmmb7vv090dng58cx9v3d1vhsxsf6bzqny4ql"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.4.0"; sha256="0wzf9c3iimcq8hc78ai188slbhkgzq94nmzcd4gxzlgmk44524ap"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.6.0"; sha256="0rgqr458m5hbai1jmcxv73ay74bgd44iwjz98b848qgx4imz8jp2"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.10.5"; sha256="1ij0mjz9arpfp67vjv6mp3h2w1marwqqdbvb2sc7vmqd0wj8bnvg"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; - Pi = derive2 { name="Pi"; version="2.8.0"; sha256="0vpvpq7ss4x6qcz525zl71ysfh65zcqp13qym03s0v6r491gndnv"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.22.0"; sha256="11bx3ivzfzh0bnmz77psz4vah0gm0vaa7pwbbkwjcra85sbzyxiz"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.8.2"; sha256="0icflih4wkddj87zvq1f188v0rqb57cw9l9vygmz7vvlxis2x9ny"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.4.0"; sha256="1k47igncvcz4sqpv59148nqcinabz5ifpl6xkcrry20gvbngnrca"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PoTRA = derive2 { name="PoTRA"; version="1.12.0"; sha256="0k93zj0mfs8pkr5cnf2y7bg9ynnwwr1acylsav8dcyz8vkc9r25k"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; - PrInCE = derive2 { name="PrInCE"; version="1.12.0"; sha256="02vnpdmns14g0qhizpify2p4mzkacj31ar31jmbxzg3bcbq2nz84"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; - PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; - Prostar = derive2 { name="Prostar"; version="1.28.6"; sha256="1kjwzb94g91g9nw2kx8dcqq7iwld3flkaxaisvjg5rzi3306s96g"; depends=[DAPAR data_table highcharter htmlwidgets later MSnbase RColorBrewer rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyWidgets]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.28.0"; sha256="04hcgj4q8dbzp1a29rbww2bxxrg679pgys3m09p0ydkpsx76rq05"; depends=[]; }; - ProteoDisco = derive2 { name="ProteoDisco"; version="1.2.0"; sha256="1929aarf9al6di1r6z2n2ggdzblmfidikwswfg53nqanwwms31wa"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.14.0"; sha256="0l5h4s77bv5wj6kj0zyj517acydqvd2sbxgl2fd22c1igwj9iqyl"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; - PureCN = derive2 { name="PureCN"; version="2.2.0"; sha256="1rd6a9x2jsha5l1nw2xn57q7nr7jxjg1wylnv7iib77nwrb0sjfv"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.30.0"; sha256="0ipsf10h9qbpmc4jj04x5gvxkbihicza8fw3qlh5qmwj83xyw5py"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.32.0"; sha256="0s360s72lfn9vjml88gg1m40n61s0dc66ilzgfjdcp65djdxxfvm"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.6.0"; sha256="1yz1wh81v4d7y109kbr51gial69l0g6mv7n28askbzpn5dl4gvwp"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.14.0"; sha256="0bbyk568z0bd2pmlw28hdibbwvfhs6wgcjdvyr8az6kqpz3yg326"; depends=[ape BiocGenerics Biostrings psych]; }; - QUBIC = derive2 { name="QUBIC"; version="1.24.0"; sha256="00annp5savi5z4f7m7kwsnijmhg7z4pwfj4lapr2wpsl51kga4fj"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.10.0"; sha256="023yr1szcsz8x78k2209242c21drszcmiyb7bs1n39qd2vi8ilhg"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.28.0"; sha256="1xfnnk896kng4m694rablk8gxq254d7nf5y8iz1gb0s688b20lyh"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.36.0"; sha256="1m0c0rdakkdn4rr6dh51c6rs40cbxkvz93n6s0m2kc6fqjv9zplf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.30.0"; sha256="0cq79377z73hhcvhzv5l8frss6wz6hmf7zvjh4v9jvrk8n0p3h7g"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.28.0"; sha256="1igxbx8wvf7jgzss2zv9w8bq7pdqr8g64dqm4j9nv20gagz6sh9m"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.46.0"; sha256="1vxgkhigmsk4f1cdn83rr8ysw3mj1lp0h7wjmxmm9pj97ig31v9b"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.24.0"; sha256="12861114yw3dx2acqk2if5h11agfsdzl23pxzqy23gymxc1wm0z1"; depends=[Biostrings]; }; - RAREsim = derive2 { name="RAREsim"; version="1.0.0"; sha256="1q2cvjikisxzpiz9zqgldlyrz0ah19vnapn4c2p4yc1k5fqhc02f"; depends=[nloptr]; }; - RBGL = derive2 { name="RBGL"; version="1.72.0"; sha256="0ph089vxla49sng0pdwiyh9rpk9i96cbsx5q2jn46jj4x51ijc7y"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.28.0"; sha256="1yiyd78nkjh24dvj3vj86mc44bw9bb9maarji0w307bw71s94mgk"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.56.0"; sha256="1mm3i5fqvqal2y0lq2cdngy445dp8yv8rzvi59bjviwqzxp44m63"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.22.0"; sha256="05sj2ab7bxgf41gkmjaskhqm0198xlir1sw3f73x8rjg14rssmqf"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.42.0"; sha256="0zzg0gsg6hcinskdj3625vk1pbzaxsfxf2m9d17gzc2jydjysfbz"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.12.0"; sha256="0v1dv69qlv0knaf96imi94mbpr8qz2a46hjn6rw7yfzfgsprnx7s"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCSL = derive2 { name="RCSL"; version="1.4.0"; sha256="1b15jjd6v2slw94fd54y2xf638yrzqaw6qs4vzwan5ima6yl0bhk"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCX = derive2 { name="RCX"; version="1.0.1"; sha256="1xrarll3fh8a3zgv507944klyq7kym87rpn7rk1kfsxs3zd94fsq"; depends=[igraph jsonlite plyr]; }; - RCy3 = derive2 { name="RCy3"; version="2.16.0"; sha256="0xbvi9k4lvva4njmgcjz2yjbhjp7n6if5622swnkyb01s178a7vi"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.18.0"; sha256="105spxlmmr23h43hrym10h5jgizq3m5g1kmxzf42q8jzns042dqs"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.46.0"; sha256="13c7701g9n6irqpfc1bcamg2pys8vsryq1y6q9mw28im73wf0caw"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.14.0"; sha256="03v6qdc9hz2p74s64v0vk4wxc4nkl4g465ygdnnyxk2qz99q79qa"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.42.0"; sha256="16iqqzk7jlwb3yzsamxmpm0424a7hphv5ajbfw9fzmsshll3q18p"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.20.1"; sha256="0176p0bjlmyp95ssiqkziyasm247n2jgv2ijcl34zy1d5jndv4gj"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RGMQL = derive2 { name="RGMQL"; version="1.16.0"; sha256="1bwcqh6hmxjwzszd2747yc9wadh1jj0dm04d9752vyf1hz5nnhkv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.30.0"; sha256="0p03fxf725c9ayk29ah48jd96ry3i0360mxphzmsdycc3sna6mrq"; depends=[BiocGenerics]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.24.0"; sha256="14ffqx419vd5qz1fbbdszvzvx4m8mqmd7sh4d0dyxy37k19l60q3"; depends=[digest graph rjson whisker]; }; - RIPAT = derive2 { name="RIPAT"; version="1.6.0"; sha256="0xqj14lgvgs2mms0khxvjl5pkacvv5b6vg5acn01dhg3bs83lbr6"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.20.0"; sha256="0scn410jri1a1zr1j9kbk9884js6ps1v9a873fpzfdrrvb31dksd"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.20.0"; sha256="1x02pkb7ff9zxlmwcdc8ck841bikhm8rpsn4jlkywy22s4mb074w"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.24.0"; sha256="0ay2604wdksppbhgrd9zig380r7392zjaypfv6gd011wjh8gh05f"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.20.0"; sha256="0m8rsvlyicp2bk6ax5sfssw6378z42d9bdp22v3j33vii3mla1fi"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.58.0"; sha256="0rmir7ab8bs45c1q49yf6apx9i4sr673b33zw12hmp76zlgabwsi"; depends=[MASS]; }; - RLSeq = derive2 { name="RLSeq"; version="1.2.0"; sha256="0lka8q9hpv3kx8xlx6glsdhc1z7y0ihfdi2qglsggy4iyzdnav0d"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.4.0"; sha256="19kvnhxwvw652cng9ngq2d9dnfaqxxd9qjsvhaqv8kb4kz2r9bfb"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.6.1"; sha256="013j46ypgvr99j2grcxp251q8178a0x0xcsn9spdwba0cis2p836"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.8.0"; sha256="10d320bcdmn6mzcvivbphygnirs1znf1rnmirhzl1f978m50jp9j"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.36.0"; sha256="0bv9xkkg30vr9lmybiialh0mimcvmcrsf0wm23r6jsmm8pqgv7wd"; depends=[]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.16.0"; sha256="0skv7hx83yq9c426am81555imdbbkysckv8py5ng3q56r67cgy45"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.44.0"; sha256="1f0kvpmkq6djfr6qx95fhmb2wblzz0iaffwwrqi6ibwbp4s3dmzv"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.10.0"; sha256="0nih7ix5bw9zc7grlw8a0yipx15r6n9ias1y30i6gr0z612whv6g"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.10.0"; sha256="0qdh9h4vw0fc3dnsm1mb232pladp5hc0k8irxdmrs5akfqfcfc29"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.10.0"; sha256="17br1v3v36h11b3hc3qnxdic9zk2q5g8p99h2350nhq54z54g9j3"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.10.0"; sha256="1g4ds43xaw6rzj5jxnahkbgpgarfjp4mygh8q5a80b7zi8z4w948"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.10.0"; sha256="19r4vvz9mj1jw5cw1afs4sx010vd2ssz2c4qspi2y6x12gnbhmnf"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - ROC = derive2 { name="ROC"; version="1.72.0"; sha256="0yfq0d0j2bzqdnjs6l2h6p48kmv9wfphlqym3brgndlnadipq1v2"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.8.0"; sha256="0vakvv2n5pzsfyy0iryafysrwrpzl15mg1wq1qs8y7hrrpc18cry"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.8.0"; sha256="00cp1293359s3h73xwjfnhdvl04h61f5jjbkzqan2q59j8bc5n92"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.24.0"; sha256="021a578p8kcl5yd9myiy0h2qp10r30ggnip2kp6xs7dx8nzic96r"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.24.0"; sha256="1p84vx25lgynsbb7ng62wmbhjhk2qippfpar9nsbv7vhdl6yriyy"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.52.0"; sha256="0kwipm60h3g02xm0v8x8c18az4zqm2fqsn9m3n2wvy59lyzgd4cp"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.8.0"; sha256="1mvqwrm1y0vij66gdwgpf5l1h660wsi9jzjfs4ihw3zm4cb0q5pp"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.36.0"; sha256="1ryfalc6h465w5zv03jq8cgbslvzk70l83bfj5cy2fcxsjgzi1z9"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.36.0"; sha256="1x72ksb9r7850xpmi5qhw6fnmz6p831mdf1s9s9bgn67kz7940d5"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.16.0"; sha256="0i16z4vqp7mqjjkn8xzzxadh88r3ikl04h7jkjnn777cn4596svm"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.48.0"; sha256="06bcy13i6j2y4fxizhg9k6yv2grvb2fi4w98f3q4pf8b6w6hcczb"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.26.0"; sha256="1r8ivxgqi9c33rzg0bx699grgzpikiqhbdznnck1daj66ab78shs"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.26.1"; sha256="12h5lj1a6v8cbmxvg8cw0iqzci3sl6ixv49qzzyz5srq4kidh40j"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.20.0"; sha256="06gxc3qpvkd488m4wsy0xqwgdpfakas934k3pqs8knq5ivc5hy2a"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.20.0"; sha256="0lglzmd4hsc4nlf6j7c5ixgkvs5dxgb1jmr3b5080flcn24s5a3p"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.20.0"; sha256="1vw185sskn59b647gfk1hqdmbm4kkb856wmv8dqlnw88mj5pls14"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.42.0"; sha256="01rn7ak7h7q9clwkbgal8n9ivb27ppzqq9s3sxp44s3dz6x07835"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.30.0"; sha256="001h07b074hvj16bjdp9llb9psphw7r6kpwhq61bj4519y6lpg7x"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.28.0"; sha256="1fwmghmzyjfbifb4mchp64v3n9fwzdc0bzlcvb96q6d1vwb9vs9k"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.30.0"; sha256="02jphy9y90jcl1i2pmsai188whb7ivb4zq0l2whzsz8hyanqgbwv"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.18.0"; sha256="0yzzbj31gb86gvcchs6bbi69hbd39f2y4d3zv1g4lmyhbxzqw6zb"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="2.0.0"; sha256="0biajaa10skv55r7g8gfa1gkz9cav1g9rr9bj6zfqdcyg4i9a9hi"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.20.1"; sha256="0j784nixky7rzfzwzmgfv7cd7x3lv1dkhnqg9j8g7jxgc8prha2v"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.16.0"; sha256="1cy4c1gw7gmz15hvl2bx6r4r1hjslymw74gmqir068qgbnn9jz86"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.22.0"; sha256="0rq14h9kjj84krgvfa09jbc5s8yks37fjbcv8z88daaib0j3fq2d"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.24.0"; sha256="0m6r8ldilv8hl3qhvbxafv928f7xma7w1rj7nv0hzi21hg741kp1"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.64.0"; sha256="1ivk4hjx1jzjg46cwwjmk7anqxwa9ddr34zf0xgbyfrbg25ilf44"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.4.0"; sha256="0870yy8j77yw67y3ihyb10w8a6py33h4p27bgikqq2b9830f5cpw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.36.0"; sha256="1ya1irwshsyy9l1fj51b04nv1ahq7a47ck7q19h2cly6yskc4x1q"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="2.2.0"; sha256="0dhdx27vrkhd4fak0qb5q9amlcpi97xhf3ry39zk0ifx5zpjynkg"; depends=[magrittr Rsamtools]; }; - Rbwa = derive2 { name="Rbwa"; version="1.0.0"; sha256="1rf43p87p5397cbh9znl0qvrplid102qd3bgf310kk3kpkjdw56q"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.37.0"; sha256="1x8a4kas3bd4dzlwwiw781l9j2xa4sqmwbzblmsc23cp7kfbvffg"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.16.0"; sha256="17fnjkg6rjqj33v7slg81skqag10y6dc14g5iv69gqshjal4w4im"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; - Rcpi = derive2 { name="Rcpi"; version="1.32.2"; sha256="0rnwnybsllq2lh5c3v3pz5c010522wmhq2q8nlqws1yl4vyq82c2"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; - Rcwl = derive2 { name="Rcwl"; version="1.12.0"; sha256="1q10gzh3m46jaac1w5hhfv166vrh23q3fwn377cy0p0cq6mhqk9j"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.12.0"; sha256="1lcx926y437jkphldnydw71k64mibgh5k0cwxzsf8f9b0lwmhl02"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.56.0"; sha256="0cy1m1mch6d7csvlaacb5c54nz3f4caddjyfwbxq74qbzgx8mq07"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.42.0"; sha256="1f5pplm8fy3wvl0b6n18gph4dq9i9x5qiyjrj0bk0kwlkbpba74r"; depends=[rJava Rsamtools seqbias]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.4.0"; sha256="1v4r1jybffjjz45ya2a8vx81i5fm911vqrba5qc846c5mikwxifp"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.10.0"; sha256="1al69vrxsc3yw7d7vi8zvx6s5cac9dm0dzhkd96gqixjfr8lbsiq"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.4.0"; sha256="07psjmygwvjkrz4dsgsa6hbw15dn97lkl5h1hk386yj94d5aplbk"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.40.0"; sha256="1fd72m2afxbbvbgwy8knp6fiq1h561plmsh4r8a08w21ngmkz2s5"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.42.0"; sha256="1999bn50w4sm8lr8ly6n773kswffcyrj3l6if37z1c17krfp58vl"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="2.0.1"; sha256="163rxsnj00nyxy96jx36z08wahbxr5lgh5r7rlk2kc1r5mv9hypn"; depends=[igraph]; }; - RefPlus = derive2 { name="RefPlus"; version="1.66.0"; sha256="0q0jklcbf7przhaxdb4w2qalin7ypds8s6v1yjlriqj62zkvd9bk"; depends=[affy affyPLM Biobase preprocessCore]; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.6.0"; sha256="0nfdnbw69dl6zba3mrvjb1v4h8avgn30kzpfwl5fi5n07x6s7xpb"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; - RepViz = derive2 { name="RepViz"; version="1.12.0"; sha256="1y60br7rk1834izrsi74cnmw90klxdxgbwhlxcqsmvr3r1nblgwq"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.42.0"; sha256="1jasydq3wai7zxkgjph7fgy77i65qrsf520chaq474xf1j9hr9j8"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.36.0"; sha256="0r8cdqzfh1jxkghhk3j8x3y9kkmdyg9ibfhsic15jqkmp1im6khh"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.6.1"; sha256="1530706c7b53h9m8smgnaj63rgdbm3hd09n7jwy6zc0y6qcffckd"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.6.0"; sha256="06zzmdym2x72a99853qvh1a4snbmgysnmi6yckakdg6isizxm14p"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.40.0"; sha256="1r6ff7w2bmyfl1vzjvpgnhb8f5arwjlpab8fw5ph8fgyiqbcx94l"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.18.2"; sha256="1jpb8h7c724yz51zjfqs90bsqxgmy1rry2ra9qamsgqpr2j9764g"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.12.0"; sha256="0hzair41l47kzykymd169a34pfhb98vrjgkgdf15m17csyz7pnv7"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.28.0"; sha256="07kws6afkxbmxq4w357mwwl712pdd16alvz7iqijjd2x7rjchj2f"; depends=[zlibbioc]; }; - RiboCrypt = derive2 { name="RiboCrypt"; version="1.2.0"; sha256="071y96ilsb9l5jfdsyhjpm69aqz8v8hjis2izvqwvds4ia2j1mhh"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.4.1"; sha256="1qr7505kvgabxmr5mp4smvz0x7pwp6n64s60iynsz08r2p3cf77c"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.26.0"; sha256="08m4rc530bkzcc43iwzg2fw9cjlf4wc2d8akv5vblsb42xdn8sqp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.60.0"; sha256="1znmxzp1g1jim5za2gi7mk0r2ac4q3wd609xncvq23s0jww0nzpc"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.38.0"; sha256="0l3k04s0wh82bfhy561m2j7zj2ckx1rdgvlbdnbkx3qr6d905cj9"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.52.0"; sha256="1i9cs3jxg9izskq2n2f4n5k9dkivnm64knmzgmdl9xhsqdabih2v"; depends=[Biobase e1071 kernlab pamr]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.14.0"; sha256="1s2sb2f4kc20anmhcrgy988yam1iyk383ia7mci0gb32dsblrpfk"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.14.0"; sha256="1r5njn90893j3p0sz335w8xq0fkf6q7ai2w23qacnm2zfhh6k345"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.6.0"; sha256="1v5bjdwzv0kram0q0cyghjn8cc2zd58qbbz6s8xa12avl0cbnxhn"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; - Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - RolDE = derive2 { name="RolDE"; version="1.0.0"; sha256="0jynxvwrz8f40sj2iha3g25znv4z097hm3snhzm36bs0h7nvv8sq"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.30.0"; sha256="11j8m69zdcmpjb3xzr4s8sqmv8aqgl8q7k81gnd09l3nyjzy0h1k"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.12.0"; sha256="1wll703if12qrn0d11ljwf7rqhs4lb27fzyyz1hqwvzn3v361s10"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.10.5"; sha256="0n9qqbkj2lgxkia6kfpfz06wbc1lvw24qyvn88f48zw5nh0rsrs2"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.6.0"; sha256="1cv0yj3j2cndyb0827raw3x7gi3li0nj2q0s71apj2bvl74y2h27"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.58.0"; sha256="0n9pmmn0mzj6zi303zzkmcww8f23xydgvw6bz5cx7sswlqvsixvm"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.34.0"; sha256="0j3ybhzdhlhw8527nks3mjja28asjya2n0m0rjkh4bw66rkfys4k"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="1.10.0"; sha256="0qvwyaiqkgdi9aqhx7w3cv1rrap5c6zcnprac6lixp5ib9a5nc7i"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; - SANTA = derive2 { name="SANTA"; version="2.32.0"; sha256="0d501mb84a95n3r8zirrhkm6l7kl47rfkzcrag3cpmd2zl0nppq0"; depends=[igraph Matrix]; }; - SBGNview = derive2 { name="SBGNview"; version="1.10.0"; sha256="0d4phx2bc77cvvy7lkn2mvkwwy5mld73rpis8q88c85sda07yakl"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.92.0"; sha256="05qs42b8ssxqlapcy9cn99hkgr3yak0bb97zbc548wp1yfhwmdqb"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.24.0"; sha256="179x0x9zr5ffqhr33va3x7ph5r1mzhy1j9xdmmf8qga0jw80alz2"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.38.0"; sha256="0riz6fmq9rsdkpfwyzva15xrfhdpab42yn2zklv6663pwha64wjj"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.10.0"; sha256="136kzmgpyn3jxnsc60x6x93zb5c65ji5221z89178yfvr7h48v17"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCATE = derive2 { name="SCATE"; version="1.6.0"; sha256="14zm5y3m03wxjd8fbl0hn5fvmyv5hlwcfh38hzzv68jfmhyyasfh"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; - SCArray = derive2 { name="SCArray"; version="1.4.0"; sha256="1yd251b5wdgjg9g2xjj0b4h5bbfj9mhpsll5kzq5cmw31qz6q6b9"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.14.0"; sha256="1hg2rwaag0vnh8wq2lwi62qjk13apdwhhbxnp93sry4h7gvkpxaa"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.6.0"; sha256="0kqwjhrjqj8q9zijajyyw7yy9dbzacard8imgc0p3p9iyssa9g9n"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; - SCOPE = derive2 { name="SCOPE"; version="1.8.0"; sha256="1vif96msq93j0rmz5ak898wbjbw6l649n0jhbd5jqjyg9h47rm8s"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.18.0"; sha256="0bd1y7nakacc1hl6dn8g47wx1z132qpi459626szc2ahmi62bq5d"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.16.0"; sha256="1gqyzd3dmb3ba9ymjk4x9kbj10cx7iggbp3iv2a3nl2il7h3kkq1"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.28.0"; sha256="0kf81k9r5rsihx7w5rh0hb7b6pwmn0qxikwy443q6j30m2b26rbw"; depends=[Biostrings rJava]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.16.0"; sha256="0dz7d0vvzg9ak2gs2pgciqabpjgqwhs236gfa48m71cy13khsdpz"; depends=[corpcor limma]; }; - SEtools = derive2 { name="SEtools"; version="1.10.0"; sha256="0s382ph3v3ynx5j90rzsh6ix9h8776m7dmn0pr8shc9gy5ixv54z"; depends=[BiocParallel data_table DESeq2 edgeR Matrix openxlsx S4Vectors sechm SummarizedExperiment sva]; }; - SGSeq = derive2 { name="SGSeq"; version="1.30.0"; sha256="0hz45367i70wl97silnimicdvs3g41zyf8syc6igz6471wbwkxwp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="2.0.1"; sha256="05r9sv41l812hnz6dq2hzgk29y25raqqzn0mcw4lcqv6zlm60k0s"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.26.0"; sha256="1vj5y3xysvf113f2iy2n10yzm3xy30m7g3brirydrj9vk73ssdcs"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.66.0"; sha256="0kvayxf4h7l9410v0gafbg31xkc8xcl1cbilfgln4l5pv42wnrl4"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.28.0"; sha256="06f4py4gk2gqdas1gwz43by1m4k5b617l58a36rm294w9hvwi03b"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.14.0"; sha256="1sbqfrawrh2yndzwl0c0dlpsj5zy264r725r4awzzawnxac3c0k7"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.22.0"; sha256="1y26296n42w18ra9c35qfqlxgxk16hz051139g82ki9aydh6b0mm"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.26.0"; sha256="17zljr5vr9zh5cwah6dya3nyzv1266wlfm558r8j1zccirahjvf7"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.62.0"; sha256="1336jfm13yhn1anzl7kjgqhvvk6gy8h0ikzi9iqrrm0sxhjyyb74"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.12.0"; sha256="1qwdwslb5sx07sgjafv7yd69isbn7sf60yisfry64bkc3h8rrmmb"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.60.0"; sha256="11c0br8kv93bzdn4y4xrkl6pkqdpn4zzyx31dqkq5bz4vvjfmz47"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.24.0"; sha256="0klqxzaypidfzgcxfa1lnrlsv08zkqwf5y82ldac7bpnnyr91z1b"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.36.0"; sha256="0zjn0qjyhpnfzabgi5rv1zhblfwz4rdldp7pa18zkayflhfhql5i"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.30.1"; sha256="1j3cz45g0bm48hqm6zm8zyfsmjb08cb7p52yw8r4jmld3jci33cr"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.22.0"; sha256="1qg1arrf9pv59hzmncmfhw9w2npk6mm068c6ghx527vja7g3lcxd"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.26.0"; sha256="186qcscxgpjxc3c875yvnc75xv4dmmjpy7ci2glabw9sy5p2vz2a"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.4.0"; sha256="0xjrn2anfsw6d48lb2kp1zxj2d4cn6gr6wb6cfllwxiwdq635lyc"; depends=[Matrix mgcv VGAM]; }; - SPEM = derive2 { name="SPEM"; version="1.36.0"; sha256="1nnyx7jaqz2cj7zmm4dfv5n9m4willwv411q0wiqsjbgm60j37ak"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.48.0"; sha256="1s6mx463xgy8hdifksb824brmrr07k38yksdrbk38v0zniyns97w"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.22.0"; sha256="1kvin1kma85p4q3jasm0q631dalndq021r4wx4vls34mhglhrrzx"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.18.1"; sha256="071w946cdvc8x277893ji74l336j99j73k3cxawi64k39c1qqsnd"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; - SPOTlight = derive2 { name="SPOTlight"; version="1.0.0"; sha256="1h6w02ya3fcg13rb0phzfx6qdw4mhbgsq6jai1h2jab8whcggfpn"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.6.0"; sha256="11symjnpyp6yb26071gnzgp3immhjyyzirwb6j7gnh8hmgzmcpz9"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.10.3"; sha256="0fxl2if1bnw79md4lkz8lq51j7hi05bhf2k66605xwgfmz5q9lyf"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.46.0"; sha256="13g381j3xbzdh6xwmgf3d1jsr39zd523q1kldpw3cmp01asykcwm"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.58.1"; sha256="11590a9zayqy4h1f9mfq9mdfj0d4i3amlb4q5vpc5ibir7l9a4bk"; depends=[GEOquery graph RCurl RSQLite]; }; - STAN = derive2 { name="STAN"; version="2.24.0"; sha256="18qa8fa6n9n965h0rwbsyfd14snh2n96rwfi1l1dg7wdrksyr8wx"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.32.0"; sha256="157jm77mh12p5wdik1xm00p8r7x692gw5sb2dphkjf6fkc53sxk0"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.8.4"; sha256="1jn6080v6097zpqsr4gfbx31gqqdhpzjrk63avk3v3xwawmf2379"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.20.0"; sha256="14qz7napk9kmga7gvhp34zh0kdkwzqx57q79famz1lyanzvibcij"; depends=[Biobase BiocParallel cluster matrixStats]; }; - STdeconvolve = derive2 { name="STdeconvolve"; version="1.0.0"; sha256="092gsmnp70wqpw21yxicpm29qwp27zxz60d026i6mfszhd48abxx"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.26.0"; sha256="0n6ap58lbn3rbaqb50244byam2fc62q85zl2a5bws5bsfccnvzk3"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.50.0"; sha256="0p4a9f4aa714jn1z4r9177jqin11qi3ln3pdjb0vblcj435yhpdm"; depends=[]; }; - Scale4C = derive2 { name="Scale4C"; version="1.18.0"; sha256="0n63sp8jalm8il1vyl1ls9cbbzs3jb227kq6rdw436mmnk5d7hik"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.4.1"; sha256="05gxr41nb1jqhv357rfha4062kszvrmkr36mhkjsf7kgnzf0p8hz"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.16.0"; sha256="0nm6z5dmnqd1bw1xpw7ljjlrbccqjmpcb1ds83yjy5wc9i0m2jdb"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - SemDist = derive2 { name="SemDist"; version="1.30.0"; sha256="01pjcxhbyhbdcfw8jrjq04n4xi659ah3mx176rf0x7dll732y161"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.36.3"; sha256="0b1zcays48s23k3z7p0k7l6sb89a8zn73xpdg38hbna016g92wjx"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.36.0"; sha256="0jpj0hksbbgzfr0k5f4zwm2ivdwrm00mcz8n8q0m35k44bj311b0"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.6.0"; sha256="0fa5spf66d1x0747ikgk822mpcjbvb0y4slmq636njxgi6n739wk"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.18.0"; sha256="1687klbjypwhd6qg7s965s7n47wf0kyfsn734wg27zv6mvfhck9r"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.34.0"; sha256="1giabkg0q9fyqqm1fqw05h6dhvs58w3x1d8jp7xddh5dqisk4b3a"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.10.0"; sha256="0z33jp0vlx2d9wn8zi28hd5ilzp1rql5zvylx1vm71bfsjpy7nlc"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.54.0"; sha256="0303198b4v2wjah9kc829kn01030996l6di4jpf8q5ccd212rjhq"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.28.0"; sha256="0xagj5zfm25d8ld497pvbx23pwbds1pkg68zlk908zwhy7g26512"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.34.0"; sha256="1kqpkl6b742z9jldnxkji7ng4w9yaj76s86njkw94qyzrvkn6xcg"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.10.0"; sha256="1c3xnk90gy60jzjgydg0vr1xmlcad4dkk45skyh42abzqxlwj5yd"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.34.0"; sha256="1ndim53fhx0naj1r5zwq4d655nbdvclfi40m3fqg891hzz370sd6"; depends=[Biobase limma mclust Ringo]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.8.0"; sha256="0i2ah49bajhjf0yjjhm84vpc8brs8y3c016l4sbwhpb2nhcqgvgj"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.18.1"; sha256="13iq480xbgqriyjrlknamym1wspdh54i9jahgvk726ksfzf19vx0"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.8.0"; sha256="0c0fsr1b0mc5a7qfa7cjipx50fscb120747c9xjp5n55jv5hwd9c"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.4.0"; sha256="0kayi1cahn57ysdhykk4h3a93ajnr41p7xbf1v04mvbz9gq9piqf"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="1.10.0"; sha256="0qbyc6ygw2xv3li9187i3axsw6ihwpa7pkvxvy9cagv7xck45c5y"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.32.0"; sha256="1ydnp54laznzpi08s403kxhnr5nqhvm3iilaxlcdlz0ngxhm6vx6"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.34.0"; sha256="0i0bl55cbrhj9zvlvh3wbxgjaq5g1xvxdd6gpnj0barr5p8bx7x2"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.10.0"; sha256="19280ardr91mk0l60nxprq9405drwmnc4jlbrzx1lz6951k07zj0"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.6.0"; sha256="1ks4279slgyn2fnwmafgcmmhq69fx6jpvafjahpvnvh6jlf9dxy9"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.12.0"; sha256="06axh7wnf19hs7y6skik2yff3xyd06y4x9jrx1996hjliyhdv88v"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.6.0"; sha256="12fyzsrgz76wndxk59p8aknxvj62g4b9k21hla4m2zj1cav46lhc"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.6.1"; sha256="1ddsdh6c1hwyaqf664ih0midfgc6crh17g2kx2glnzl29vhidr9i"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpeCond = derive2 { name="SpeCond"; version="1.50.0"; sha256="051p6npzjpwagd0bnzpbdjcmgkasr8d74a42ppmlc9hsfg8pzqcw"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.6.0"; sha256="0kzz7par5zwk4qypicmz39d6bc4aqmflzzxfrpng2y3id7f15jks"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.12.0"; sha256="0svv4mp6qk2k3clz8qdigzhawh4cglzwrb8frh5c6mgrgdbf53g5"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.26.1"; sha256="0zwnl1pyclg994l8ikp13zlzh13daph113d8brg37cjmrvag4abm"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.4.0"; sha256="11kkr4c2ilwbr2h80aqiphxihwzs4sr23hq3q6w22w3wqqp7w24k"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.36.0"; sha256="1c8m8ab5jrwa8fryrdww4r41svkv864l2pr1hy1kil3njyaam0ml"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.22.0"; sha256="10wf96rn0d1srwkp980www7w5jjxzrq1li8d7n7069z3ja01p4ca"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Streamer = derive2 { name="Streamer"; version="1.42.0"; sha256="0v2cgi38blr8ydsnkyf50raqh7kcjzz0bpw27sl4ayprxbqg8nda"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.12.0"; sha256="175g2wpsvmh8vj3pqv55mczhfzxip64rilynprywll9njk72ayb0"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.12.0"; sha256="0f3x74ic3blg8nm5xlv79k0n8j3fpl98mmhfanqfzmdl0g3j6wx6"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.12.0"; sha256="1gj49s99sfcnvpd04h9y4mil1x4d4s33jadljfpwwavhqnbqbp0w"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.14.0"; sha256="04w3mb5f3wj8n82fzhfvhaq986k1nfji8v4w7pnrbprizq6a5clf"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.26.1"; sha256="02vlqzmslyijs09jl0gdjxqjjnnl4yqbqqqlb4vb7nr0fspmyz39"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; - Summix = derive2 { name="Summix"; version="2.2.0"; sha256="08f7dr3ni2dkd55m7rgfc9s6xxn1na9xp9vpnmr3rcimp9w6lhwb"; depends=[nloptr]; }; - Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.18.0"; sha256="02lkh200pvzps2vp0i4fjm96zi1fy8x21kvd0sa599yks7vimzp4"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SynExtend = derive2 { name="SynExtend"; version="1.8.0"; sha256="0z30izc2wnbbhv19xf5dnnls8j42v38771yv78im75li88zxl91m"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.12.1"; sha256="0smrqh2gk1cy8aqqrfx7whwdcsn5s57w6crkah2v50p1q9xbvgjm"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.6.0"; sha256="0ramji5pn5w7ch83slflsw1wxhy451zw99rkhzb4slvgqi8v7bk8"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.8.0"; sha256="0ls9l12fp04j2asr25cbz6xs38y3znhgcphfglbc13li3aa77gx0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.8.0"; sha256="1npcdr3grm6qq4lqan6z9czkiwyz74pi741jwahzr0q93ah25kks"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCC = derive2 { name="TCC"; version="1.36.0"; sha256="077gj5f1iwb3xwy29p5q5fr3459nq9swybn7504dyxb93259qxzi"; depends=[baySeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.24.3"; sha256="0visvfhzaf0p1rb5vjkmw1c91zfxpks8nl9nbl9xlnpm8lkmmkms"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.22.0"; sha256="1rav6nmbq8sn60x6cdc5zmvwwpiyfjc6n8hlzyjsg2yy3h3ij0qp"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.16.1"; sha256="0lsnqxv0zbx4b3dfm3x5bf7i88y9wpq39faff84lrqk4nz9v4svn"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.20.0"; sha256="0wqkbvg41xbkfc0xs44ckpzagwyfmqrdr69fj7am51khzv7gznrk"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.46.0"; sha256="1ryrnaaq15sgji2j4js5vgsr2j7dl4dd0shmz7qayyq0k7ai2yaq"; depends=[Biobase Rgraphviz]; }; - TEKRABber = derive2 { name="TEKRABber"; version="1.0.1"; sha256="0pilrjrvd43jr8h6s2zcc6rk0p4q2l3bhz6lm344a7y5wyvccly6"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; }; - TEQC = derive2 { name="TEQC"; version="4.18.0"; sha256="1n0ifh86z4635x8hk4yv8n1ay35725i7y0n8j2gdp7si5y3nsfnv"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.18.0"; sha256="0rmw7r6k8mb5672aap26liqblrmasxvccxd4fjw2sdb449wbd9dl"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.34.0"; sha256="0l6j1r2cx7jfd39qzbyynk4jvzd81ys6yypzxjc97js4kkyrx29w"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.16.0"; sha256="0ckc4azfd9li5qd07ylprmds8qyq78bf8blbqgrkrgig9jpzn92s"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.18.4"; sha256="07vfy39fa0nx685wj248q19h0733p773vhad893ds4ikbylmy6mg"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.16.0"; sha256="1awzxj668ldh44fl0izvbm73cgm60rw93rfqfbhsflsx984rhzj9"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.28.0"; sha256="1kgs45dif5fdmxlzhd6971mlhg0y1a41srnrx7irm4s4wckrpg4n"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.18.0"; sha256="11ypr523hzbrynr1l68l7grn32499bl3j5wb7ic5i265r2kjcz4w"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.12.0"; sha256="12w43p3fpcn98h3p9brkc9fdsn0wn73bzyrz63gm43q1jw0zpizd"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.10.1"; sha256="08pqriz9x32ixkjajh2wlh1cb7y8xmxna7by2qm5pjrrzblq96bh"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; - TPP = derive2 { name="TPP"; version="3.24.0"; sha256="0w0gwhvc2mra0jd81pskhqsdayikz3fpbcx0sf45iac918dd2m4l"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.12.0"; sha256="1567r1v92skhlvjysh5v32h6c50grm8qm7wbwdvr52pjqc7kvfb4"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TREG = derive2 { name="TREG"; version="1.0.1"; sha256="1d0ynkj1iiirigrzbnfclzcvvz1yx8c0ykqhz5vg8bhaw1h0ry3j"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; - TRESS = derive2 { name="TRESS"; version="1.2.0"; sha256="17g37g8kbis42iv980002py225cxy0gvjfnjda760am387gb9hqm"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; - TRONCO = derive2 { name="TRONCO"; version="2.28.0"; sha256="1ynf41bpc0v51sv6mig84n778kpfq0l9g50xff1bwz7zl1iab4al"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.34.0"; sha256="0a8f38jbb2lhqavqgbvm0d9xfy1cgjq4l7vs5h6kr45ij09wr6pm"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TTMap = derive2 { name="TTMap"; version="1.18.0"; sha256="01kj5snbf435d073xdh0pya2rmd1h3cxsagn0mqq5vvf46246258"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.22.0"; sha256="006xyify2vy8jblzwi1hayn4yvvqpyz9is2z1z0lrcy7krhdmx8s"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.25.1"; sha256="0g6zpbyn7ysvlply9sqbw3pw504nk5g342vv5n59czrr9nyymics"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetDecoy = derive2 { name="TargetDecoy"; version="1.2.0"; sha256="15z2nzaikgbp0y56v0cifbk2w1c1akgqb5d5zgbcbpih0kawhfjd"; depends=[ggplot2 ggpubr mzID mzR]; }; - TargetScore = derive2 { name="TargetScore"; version="1.34.0"; sha256="1yrcjdv5g3nx8m95wf1nilrmi1sppii4i4da19sm5ys4idl60213"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.52.0"; sha256="0pgj9h5sfwgx1rrlxd9zrvmbj0z26jxmhdx6f2khbgk7i2c1hxpd"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.6.0"; sha256="0n600170qabrswjch922skfsbwr7hnyxzmg015bxm5kfmwhab9pd"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.6.0"; sha256="1x8s0k938vfdadf6b33ha7ffvd2sn16scxii0wlzzm9s4v65vsvy"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.16.0"; sha256="1l8qza4dmacp2rgx0z9nmya6jhidymx14wnz0vza0bm9409kaw41"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.34.0"; sha256="14mxskynm6rjh8c7nzkp06c7a3a5rlcj88s9c6brzgx7gm3k7j3x"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.18.0"; sha256="01c4lhy9k2wiy7m7685qy4bj5q9bys7xqxfy9x3kpcn7by3dix83"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="2.0.0"; sha256="0d331md9cq2h44zq8wvj2167994i097drfgljhwj1nnfsx9agqn1"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TraRe = derive2 { name="TraRe"; version="1.4.0"; sha256="1vrafzf8qk6nnav1m4ym26n8f0nfbsxqnmymv9a7k8yfxry3jnn8"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.4.0"; sha256="13dxsk2dq5bsf9bwq4618kr6wsbmvzqnqh8i8zqrx4i818wd571s"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.4.0"; sha256="07hcr3zplxlzlwc13wh9006m5kaqm57cm1b2x74bpp857f2q93dj"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.40.0"; sha256="1k3fs0wxh2m2mp7i6hqnpgf60jikgjn7cdv2mmnz77ignp37xr4f"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - Travel = derive2 { name="Travel"; version="1.4.0"; sha256="1k3wv2a38cfmyxci8pi8i6vqj0q3prqdh1hid2sa40slapk6h30z"; depends=[Rcpp]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.8.0"; sha256="0wxgwcf2g2siz3kv19an1qv45xap8cdi4gblc9kssg0pjbxyhqnh"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.4.0"; sha256="0bqqnx89bcknlrpxm5n3wbmfw99gfrpaxi5n6fv4pmqyrd0rwcx7"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.18.0"; sha256="06rjim93kqrf7l2m16vgi567fi9cdblgbf9khnmmbg73kaa346zz"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.44.0"; sha256="00rggbdsk7xprkry8bi17mf143kqgw63cb315d9dc1qrc9vyz568"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.62.0"; sha256="17cj4yd6lpckidzh5f3jb3vbwyimlnmsb3v5as4f91h2vnymwpax"; depends=[]; }; - UCell = derive2 { name="UCell"; version="2.0.1"; sha256="08wh5fch4sb1ijjz8rr8jkz3vvskb7k7948fd2b7bb104qmyhv41"; depends=[BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.6.0"; sha256="0216qwriwjm0m7rzq8qjrvhnmn0fyqsv13cx24is53wqkqbqnavm"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.38.0"; sha256="0fasad2y0cnrdlfarqxlmgn30hjfqksddnvq5yia3ps50wzj7xyr"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.14.0"; sha256="0pqinw35vd94gk78i45rdyl4gyp6q8dmzc5kz72mcfg702wh7g8h"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.36.5"; sha256="1q5wdfww4pdsqyxjvv2dw88b3kwddvj94p17yxbnnrs4ra6jcfdn"; depends=[AnnotationDbi BiocFileCache BiocGenerics cellxgenedp httpcache httr jsonlite progress RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.16.0"; sha256="0hf2gs0aw0jw9qw1bqhsvxvw5grppbi3wxbfiynkbvza11aglifw"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VAExprs = derive2 { name="VAExprs"; version="1.2.1"; sha256="19jhjayyaga1lyswhbibgva32mdmfvkdidcvxgl22728c6ppkg61"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; - VCFArray = derive2 { name="VCFArray"; version="1.12.0"; sha256="17zgwv8nc192jyzlym09zyqppbg6zlid60xzh921mvp41sprf2j9"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VERSO = derive2 { name="VERSO"; version="1.6.0"; sha256="13s91s03l15sha9sqcwazhhzph7s7ivbijlq1cz6c04x54bsdncn"; depends=[ape Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.8.0"; sha256="10fvdlxj4flv4zssaprhzg76l0jlin015pha7dmvfmjda4xm2zrl"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.58.0"; sha256="1m3fi8snnf5rklhnwj2wndk86ry27anpa9pkk43v35qx5cvm1q9p"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.4.0"; sha256="0l0vgs2hmykkxp2s14pzwjzg3xbhcj5md3hfz85n0cn4j8qgf4hz"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.42.1"; sha256="12d5hkx6pby6l2asyg4jp4jb2x17ybwhqd55rl64h37mwcndbdg1"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.10.0"; sha256="17xrlmr25iilrnmsicf42qc7alh8qfqg6v7sd5mpw4lzwxim1mqv"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.32.0"; sha256="1bjqn8qik221x0bqvgd99p87v45iihwp6cxckh4ks964pd0c1xk8"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.38.0"; sha256="18nxcamfgnw4n2ab0czxglw0sqc9wzdqzpjv43lcyyal23lzzsix"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.34.0"; sha256="172sa4zy4azyq50gxz9p4w23ac2xczwbq3nyp95q9zw9q6k7zcsk"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.12.0"; sha256="0z98xhc636c291n76x9zxfcplgd3gc83fdvfbm8hjsmbp0fwca83"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.10.0"; sha256="0s5x81cd7az9bx74rpfqy1lcf4p494mcj5bgvb0ky7fgnfcn6b6d"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - VplotR = derive2 { name="VplotR"; version="1.6.0"; sha256="0k2gg4kjkhlha95yxknp16sj6idz7jsqimna7grcfabclqilypms"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.14.0"; sha256="1zx65s4m71wj85s2sq8ip54pq12r4sxfv8b2rxc41gfc5aj0zzca"; depends=[limma locfit matrixStats]; }; - XDE = derive2 { name="XDE"; version="2.42.0"; sha256="02nvrkj2pjc8jv57zilmx39bn9vxpj95f68gvf3sp6g3gffblv0d"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.14.0"; sha256="03gf7mqpnwx12kny9fsaskgrw83b0wi2cf1j4dbq46pfxjx34v1g"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.4.0"; sha256="07y0n21i83izlnavwbxlhmrsa074k73d9p2cl19bj704sylw0g1j"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.36.0"; sha256="1f3sbqy279gb9k13l73j00ixywa1havlqy81zx766r1xkz15nvhk"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.12.0"; sha256="1ajgaf00bik6dfk3zj0m211g38lxqdg99r99rz1n21nms6a4qzia"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.22.0"; sha256="1klqfif4sadkxw7agywk2ncvcdqsnfb1d6adnacdfdasr8abvhid"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.44.0"; sha256="1zs8fs6mdd7fhsmx4k824mid0jk400cm6dwfhl8z5lg85y8y2n0r"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.44.0"; sha256="15zqirz16gpks9f5d3d76h85b936za2jih74vfr55l5arqrrvvsn"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.44.0"; sha256="1v61vgpqrf7bhk44n2gkxb8dm5d0rr8c9rd6fdcjs50nhij0lbiw"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.44.0"; sha256="1ky1lphq6bqxj6h12pg06cvs451fziqam8gd56wmpk6r5pbg4390"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.44.0"; sha256="098yzy7x5536bj76iavismdsdn7x6x07aw0j3knj6i9www9y8yz9"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.44.0"; sha256="03sypayh187gqc6hykkqr1g0vb3zxc2c3xyp00jfbn12b35acnb0"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.74.0"; sha256="00ni0kwy68v33ggfi8g5vffirhmbhaxg4l54hcqhx75m535z1x7d"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.14.0"; sha256="0jh3rj6ag07vpw6fymqm6m4jkrm9mgf50zkjncahxdf52mna8a9b"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.26.0"; sha256="0lgq546y4qklfzbc6fjr3d656hn76p6dn4694qfiafql2nlsjbj2"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.66.0"; sha256="1wl2gd0b7krf485clw67cxayp0g9argklkzn8nw1vrkil0vvr4jm"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.12.0"; sha256="0623qf06xgdsyz0in2wnxwvpdw8kj6cnwf8vlqmgp7g0n3w701ys"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - affxparser = derive2 { name="affxparser"; version="1.68.1"; sha256="16x92gwsy7zdyz4md4cw847xn2ymqd6gqsn0rlr2nnf3qmnjnils"; depends=[]; }; - affy = derive2 { name="affy"; version="1.74.0"; sha256="02l77y4d4m4jwgkb3jdaskv6shmba5292whp0i29mg9asxv4rdc7"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.54.0"; sha256="1pyd4rj6pp139kvhh97whi4afvx029w5lglr4mnscw7m3f618v0p"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.48.0"; sha256="1rk68bhz2pyca4saiwd0kcw7sh2gs6d4c482jj4kx9r216mpb4q6"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.72.0"; sha256="1m3n5mvpg9g46rrglhdh94pppf71xp344yrcnw1i60vwv41vhbck"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affycomp = derive2 { name="affycomp"; version="1.72.0"; sha256="0aq5p56sqpvba0yhgd75302s9bazchh1izgymng6cpb78y5wfpj0"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.68.1"; sha256="05x64hy5jpmg973biwq4q9gzy1n0iqc0pxrix1f6bri1w6vil3ww"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.66.0"; sha256="19cw82qvzkz6vh2gm302y7digsf6xif7c9l2q9s6lkx2yflqpgfp"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.70.0"; sha256="0ic8cmssjpjkblrblfdpqqcaxn1izxk1hmcfdk1sphm7wfiw8l2n"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.6.0"; sha256="0ngg12bgr95m4wm12scmrb55dgy4909c6qrg169l6dkng99v4nx1"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.28.0"; sha256="1pm329y2nfcnx98ggxq0prdd5pxfcl5iylvsjjnhw5lyz1awg1yf"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.4.0"; sha256="0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alevinQC = derive2 { name="alevinQC"; version="1.12.1"; sha256="0g75qnz7ah0widdjn99lhvnacz38vgl9j86n65wyswsf413hz3bb"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; - alpine = derive2 { name="alpine"; version="1.22.0"; sha256="1nl1hxwakh5m9rqm3ksn2jzknsj9xnwl51bmc30knknm4q35wdv9"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.58.0"; sha256="0caw9h0gw3qfrg4iqrydjdbagm059if513qjp1869cb0cq1w45r6"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.18.0"; sha256="0q1c0g93xl0s2i6b1g21s11dngh7fbz63sn48yfiasvpxxlbag5q"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.12.0"; sha256="144949zlamwh0ykkw2n0qr019cn5pml95s3g59k5xkb85q6wykqc"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.68.0"; sha256="1fbqknwbl4534h66xrhcryg9pavm9fkja47gqbsxf8bd5yhk5mgq"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.38.0"; sha256="0ywqbb8jia7rrkzcsf6a11kqf8dnx96z8n8xw7067mahycykbixv"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.74.0"; sha256="0x6vddpiw2g713vicf70198x8dlrwf36p8jjygdsfnl56ls5bh2g"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.70.0"; sha256="122b424zida3j0vqkn8d06sg3jpc3ngsgidr8kgg00n4cjngkc51"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.22.0"; sha256="1fbax9v3d486c8lwf3yfjbf4w7zf53wmdpxk2clwm8ngm7w0pqm0"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.44.0"; sha256="1x75r5znl8jllqsgzpxsqj62ch11bpwhmyzmbjmb8sz8f8ww923c"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.18.0"; sha256="0mjgw1ncdl2pqqbkgsj8ws9nkj6zfh1dlygmh535jck6gg2rh454"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.36.0"; sha256="1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.62.0"; sha256="1h5xn9wm75rphikyjdnamyvlvqvy3hlgf4qgx540va9w7v9gfhqc"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.18.0"; sha256="1ppwk4g66x46hpqsfsvhl12398d1srqr47nmp0y2gz212kff0rby"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.14.0"; sha256="0r7x9dhy1bivcpqrcq43w2awg7y2ql92rarbvylxbzch8x07f70h"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.26.0"; sha256="1240v9wvsf205g998ms19hncki8g6shidg09dy5np9pqpiix4vys"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.54.0"; sha256="1wh4hhd9qq14137yp0zi39wh9m458vfcfff7dsfdzpra565sdrjn"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.74.0"; sha256="0bqxnny60sx474kk5cxd0id6gm1slypp8sqah1m80wd0vpwmp575"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.52.0"; sha256="0dqfl9agfr11mn38ibrf4jrfbhy4vcvn7ajd2mp7w2nmrfr0720i"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.14.0"; sha256="0mdcvlpnjkkgp08kh3smx49pw1bav5zsynp4vak6m937ngccnzsr"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.12.0"; sha256="0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.2.2"; sha256="0b89wb7cc44c8jd6868dn8pwgid768bprkncsi87qkdz0abbhzhp"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; }; - attract = derive2 { name="attract"; version="1.48.0"; sha256="0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.4.0"; sha256="00k04pp81s6s3dyzykh0cqn27gxyk2brkl0k8g40b8rh13s1w8qy"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.4.0"; sha256="0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.24.0"; sha256="1zvcxdj3r892898ik5gq3jdbfig1438qws4bwd465ik8vi7g39v8"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.28.0"; sha256="0l8q3fymskxmsi5jcikzjz5xi66lpzgv7bjymir4izah2v68z708"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="2.2.0"; sha256="0dc2hpnykr575jbrq9whmdabknl70s2hcs6gkmkl4kpv7xfqdq6w"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; - bamsignals = derive2 { name="bamsignals"; version="1.28.0"; sha256="0ywbxq829hclhr5bb6p77rspxvfs580zlwd2f5kr3an6rdgyx9ky"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - bandle = derive2 { name="bandle"; version="1.0.0"; sha256="1f18k23hdjasbds37dsmd31ns4p1jm6bqfllw5za64z0mzd3dd29"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; - banocc = derive2 { name="banocc"; version="1.20.0"; sha256="10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.4.0"; sha256="0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.20.0"; sha256="07mcg0bs13apabhsip997nj6riqdrv9247azg379z6anaa0b0vpd"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.8.1"; sha256="134xix2iq5l7783dng2jjklxd3m5lh4snb7bjhslrs2r1j3p8jpk"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.8.0"; sha256="1jnqv0rlljkq27rd4ixl763v335f2aanm4fzr386yc81fj4vnmhk"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.12.3"; sha256="00ix3hvhgalxg63qnynv2waa273jk336lg47k72qwxfzimsxfjxc"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.14.0"; sha256="12896sryq5bfbqglpk3dg9cdsq6rk3jhzdqcpyasvk6w7v1w8bin"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.30.0"; sha256="1yqykndyv32s2rk7x86qf410qr0pigc8z4gdkl8vhj4dgyr47n2j"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.18.0"; sha256="0bn3maqxayprrd73gwvxgqkk0zqc0nanw29wsnmvw7z1bd15zqy0"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.12.0"; sha256="0fc6vvjjq1mfjfj2zqkap3rwvinnfqjs0cpk1447sspvd1rjya8c"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; - beadarray = derive2 { name="beadarray"; version="2.46.0"; sha256="09n38fmckc0zbsv150x8k7l0xqbbjjkxnyqx84lfxqjxs592dvjy"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.62.0"; sha256="0f07mjxm3d5636rd668i5710r57zkhn1j642ivghs61bjgmb3a01"; depends=[Biobase quantsmooth]; }; - beer = derive2 { name="beer"; version="1.0.0"; sha256="15s7ygx63by28hjks3b5w5ig72zvlzb8lxp1mv9vzzxjhp8jq33p"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; - benchdamic = derive2 { name="benchdamic"; version="1.2.5"; sha256="16mrc5mybi8sz0v7xh5z4i5vd7p9wg8cry83gj62ka3vznd7y9qk"; depends=[ALDEx2 ANCOMBC BiocParallel cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; - bgx = derive2 { name="bgx"; version="1.62.0"; sha256="0q2y4n6bcc9pvz5sgfkw1lrb00rrp7q29i1vh7srdfmfhgpyz6bk"; depends=[affy Biobase gcrma Rcpp]; }; - bigPint = derive2 { name="bigPint"; version="1.12.0"; sha256="1hp69j2qcidrxqs3dxjjngb09nbzp5x2yy4jz1rjmv6ghif9ccfj"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; - bigmelon = derive2 { name="bigmelon"; version="1.22.0"; sha256="1msch4qbifkdqv0bbw03xj6d9w28z91mf4ki41rqg6048cq17h2k"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.24.01"; sha256="0dyxwms1s19bmj5691fqk51ig2b0s5yf62j12gpd0xv1arcc2zy1"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.68.0"; sha256="04nrvrcvpj0sn8p2i8n3ggsl2s7r4na576174i7bn1sj21vr0yb0"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.34.0"; sha256="0zbrci0vgk4qca28i0qb2izhyrz3r95l1w54h9h3zj9f3vd61wrz"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.28.0"; sha256="04x1z9nchm4mbhqr31011zdprc4md156j4zf003s7xx0n278xsgh"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.8.0"; sha256="0cx46hdqqm6mbj0vp4y86axv0qccd4sgk2jwwjvnqp5pynq9bbqa"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.58.0"; sha256="1y59a7c4ahhn1g2wz2hkx83izfn8i85mmxxp63jdd0rg7zwhr6nn"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.64.1"; sha256="0ixcx9qqpmwmnhml3klk5z075km8g2l4q0iqc1dbniga87qgyl38"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.6.0"; sha256="1hdgjp00d2si3mr7m1d289i9wn7g927z6n8n27d5sm94lb91qln0"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.4.2"; sha256="0f3clqmrpaawhjjyb4x5mnbhsam56r0av05b5cl5p4waylp8qbs1"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biodbChebi = derive2 { name="biodbChebi"; version="1.2.0"; sha256="14sgjlklrvdz6wrsk8qbfmv98q8wcr229w1ra1kif7agvdqdw0ad"; depends=[biodb R6]; }; - biodbExpasy = derive2 { name="biodbExpasy"; version="1.0.0"; sha256="1a2g0i5jb6i3qvldiy1msdcpv3w65jpay2iavzmzsp228jp49v5f"; depends=[biodb chk R6 stringr]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.2.0"; sha256="16vmp1z1b0jsap7xd7wcr0fbpl75srrswmqhcq26biy23w1r93kj"; depends=[biodb R6 Rcpp testthat]; }; - biodbKegg = derive2 { name="biodbKegg"; version="1.2.1"; sha256="0227nnqfyylghn3gb5ps26ak18hvbjhplxrnwg2lcccd5mi67hwh"; depends=[biodb chk lifecycle R6]; }; - biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.2.0"; sha256="0zbw7jmkq3zaf2mp86yizsfm4nyamgi2fnlhn5bl0wvd01jrjlc0"; depends=[biodb lifecycle R6]; }; - biodbMirbase = derive2 { name="biodbMirbase"; version="1.0.0"; sha256="1ci7wf0wkqvrwqw04z57i0l9ldgzgmhwfwv69yrrz1a9yjfq82q6"; depends=[biodb chk R6 stringr]; }; - biodbNcbi = derive2 { name="biodbNcbi"; version="1.0.0"; sha256="1ymngw0wy2jr853v0r1gf3nb1q596f03gjhxxf0x2pkblpp85mqz"; depends=[biodb chk R6 XML]; }; - biodbNci = derive2 { name="biodbNci"; version="1.0.0"; sha256="19gv91mqscdzpxcia32hc03v62icjd79c8bkkmi2nmvaa4zsyjii"; depends=[biodb chk R6 Rcpp testthat]; }; - biodbUniprot = derive2 { name="biodbUniprot"; version="1.2.1"; sha256="1cxmjq5f92is9ckqm61fj6syb2yw9i1pxj54yr268l2l67kz89vn"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.52.0"; sha256="0yn3kanyrplc89a900xiz33nw1v23mkljvd5isizgs8gzvwzf8xg"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.24.0"; sha256="12wqjipxhngmlnrdmx329dqmkmy2wa4nkkrhwaqv2nwy90dncs9n"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.36.0"; sha256="0i576g7pkivqaxff1pkb760mdpx8v9fh071aic1mwfnlfa7k87ln"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.24.2"; sha256="0vdv2by3qv7y8vzr8qgg7apwwgsa0fhlfrhzns7g3nas7883c89m"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; - biotmle = derive2 { name="biotmle"; version="1.20.0"; sha256="1frig90krvfdk6nwpmslpj0pvligyzwzfwwci7hzwcmbglk5jj22"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.44.0"; sha256="1ffzf7yvl47l8v8a50m8g9q33hgwvxg4fcm8ld2yy8hd2zl86zyd"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.10.0"; sha256="0y7vbdaafiga16yr0d22w1v4p0jmczndcar0r0km06f5y1b74amr"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.10.0"; sha256="1b3ij0rzri4xxldinpk632m2px228xl1fy6vgj4f8mawymlfl6h7"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.30.0"; sha256="1h3bnwlsi14l1f4kdmv6qqypfa09gml812k6fdni0i6m9g79yylv"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.6.0"; sha256="1g496yc7mdhshf6r0n8xhj7ax936ia5z2cx72lqyk2vzzzl5c4v8"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.18.0"; sha256="1d2m98vpjl2ibzx61rr9a95v7wa5zz2s2bnymwmm08445dv33sy2"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.4.0"; sha256="1qh3kxy09q29s9sg17gg3yhvcq3p99mnvr6zm91izf8fgyivz912"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - borealis = derive2 { name="borealis"; version="1.0.1"; sha256="0glldfg1h480fpm5wpsqq6mffnkwvfknpl2hdvxvwnarqv0qiz7s"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.10.0"; sha256="0vyzw4i28bz15z06rz57h1ipcxs5lqlwcpf58a1wz0gzn5na11js"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.22.0"; sha256="0rsfx60l6972nz4kpjly0h4sm48flfrwskgh1shl3hbq3bnli18b"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.14.0"; sha256="0mx8lk8q69jq5wqwhp7qvqv1zvm3hj6z53z3sil0470ri7jdyh6l"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.10.0"; sha256="0wg52zq664zdv8lh4s6662wrwwxf9blrpag7b89ywz8p8rsnnmvm"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; - bridge = derive2 { name="bridge"; version="1.60.0"; sha256="0w8l5fzid3iz7pb8wdggx2xli2jgcgyxvgnij2jl5blkg1dfzhc5"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.32.0"; sha256="1jpfib2vb6hd7pgh3d33jgch24lba175zmbalwsbgvlmmyyf1ki5"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.2.2"; sha256="0jrvxlpc18gr5ba5r4pqrwzy9q6v03q26v150b2cb5b5nz4k8mbk"; depends=[BiocFileCache vroom]; }; - bumphunter = derive2 { name="bumphunter"; version="1.38.0"; sha256="0k92ps9chqsimbc7vsr8swg679zfv8nfn5zahbqq4nknhhy7hwxw"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.8.2"; sha256="09bjlyr4l7iifgk39kkn3bq9lddvsgg2qj362xxy6z8igzblm05x"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.14.1"; sha256="1dsn2g0qnvv2qvkd9c1la20585z7pvhzzbr30y45sh271s27pa12"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; }; - cageminer = derive2 { name="cageminer"; version="1.2.5"; sha256="1aq9q9cl75zscddmr3ijzyr9cn9cjdirvi0rl4jlnrpqkyh60x1i"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; - calm = derive2 { name="calm"; version="1.10.0"; sha256="0fmi5s7g9xcbznd4g4hngp1rgy4anwdqxi1isp40anyhgmn3i3kj"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.30.01"; sha256="1fv3dl7r67xhzzdrcwqyhr3g5pz8im0ll2rnyixskp1w55b98kjg"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.40.0"; sha256="1s80w8ksf735ps677c7dcwkkpq1ynjqmp2r4biqav4j1y50nbi57"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.30.0"; sha256="0rx23ppj78m7dinvrim3hdh330xdlv2yw5405akd32dxr5dhp0wh"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.40.0"; sha256="1bidg957kjfg16w07gdbb8ygzipg2c47by9wilj4ijm32czv2ls7"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.18.4"; sha256="1iqjqigb24qkj4wyci2q9f5nrgz1fnm0fl9xfjpjw1sx2csqgirz"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.4.0"; sha256="0h60a4cx3cgzbs9mchdasy7vgh6rm8vqp5w770328jwq9wyj3xkr"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccfindR = derive2 { name="ccfindR"; version="1.16.0"; sha256="1gg5508qxhv0g4k3m1iy3bzs53wlqbvnx3lsm77zmxhng38zzniv"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.22.0"; sha256="03rw2k0ln1lr4c0sz06x1b8wyriq659bvngbb9wyr4mkcbjz5jy7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.32.0"; sha256="04dmka519ppp6c68wdw98qfi897jad5wr9az0j09kyzk92mkcl10"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.8.0"; sha256="1bl7nasll5p18b0g8q1d0wfx2min8897pkkw0hfp6ir6d85fkj4f"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.14.0"; sha256="0pnnk7rq4yrl33ycxsxak3zz104350rzldi7hdnrp5aghr0jxjl6"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.12.0"; sha256="1qqm4pags5bp08w70419qlaghfr3r3pmb870k8ax9snbiqx32sp3"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.60.0"; sha256="1mrf7mdhcbvvcizc8nr8mr6xp6k9zv6v97p3zz173iqhlwf0mvvn"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.26.0"; sha256="0zpf05w4bcnjfzb8jqq936rs5ji84gpn72bndsk6ipg8s4lh0bav"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.20.1"; sha256="15y11jykxm3c681lr277zvzwsfbz0rxfzmdwanlmh0akafyl6nr6"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.24.0"; sha256="0ywghrfj6m6hcz9yvpq0ww3p05rxdrfjna7il9faa76va5m8ssly"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.4.0"; sha256="09c6rmraajiqx7hgxmjyx4h32gdjy849ymyid0zvxqq4cfrx0pbs"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.20.0"; sha256="1k0z7sw4d3wxy4sz42b6aplq2njm673sfqgzzyf6m8iax2rvgvhs"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - cellxgenedp = derive2 { name="cellxgenedp"; version="1.0.1"; sha256="1p2ajvsnrsz3kl1xkpvja5pxk3qycx0dvmnrwxwij3z15kgbcm2b"; depends=[cpp11 curl dplyr DT httr jsonlite shiny]; }; - censcyt = derive2 { name="censcyt"; version="1.4.0"; sha256="03cr3l893b6250339d60xpf5mqcjl38fa9cpihy5gl83iy3dz9x4"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cfDNAPro = derive2 { name="cfDNAPro"; version="1.2.0"; sha256="1bbmp324nl2ijbifhqyw074s2na391c359iyq03w73yd86w8fcc0"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; - cghMCR = derive2 { name="cghMCR"; version="1.54.0"; sha256="0761pjajxgavxmrljzwksw0awdqrqxbi9cadqgixc0sj94rz82rd"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.22.0"; sha256="06m60db90fnhm3r82n5zdbnwqlqnnc93cacaidizm5c29f7f3h40"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.20.0"; sha256="0nfxhghkygn16j21031kdwh27vmwzlvsj6cn7a9bcd2vr34kq31g"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.46.0"; sha256="1vh0hvgnw7ykj401v1q807sl14s4nixp1d8xbm41n01q6w8x834i"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.62.0"; sha256="0zhf3s8pbgvk1g2qkp1hs1yhsg87hpf71pf9v9sczcggnwcrgj8r"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.26.0"; sha256="0x6znw33r7791cs7504kih12r9alcvsvk2z8in98nhndzlfr99qh"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.24.0"; sha256="02k7l22hjvmkvnva28plbrxv87v7krbjivs2bxrl5jw6ksc5m4mj"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.18.0"; sha256="0vhsvkm4kvln0002f13ayk57f9fmiz1kw9vwpsm1vds1vahd656m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.22.0"; sha256="1xjwmnr4hk8v3nwvhqd6ixk5qr2dv0n4mb9wd6nl7cgjfhjsdgj7"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.18.0"; sha256="1sdgmigr89kbbm2rcbjkjv9z8ig332a1lnk3mqpa15bkpapw7abm"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.14.0"; sha256="1ip12ijazlmcfbym078slxykpkz7d1zwvs8l8aqdnqpxjfk1ipx5"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.10.0"; sha256="1gwm416shhv2p3gh1n6kv1rvx0n0imy25b7z62z4s8b3gs3nfp5j"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.36.0"; sha256="07h948mxn2zjylv2y5q5w6rwqqmmha21xgwqpckzhgjh310jj674"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.34.0"; sha256="1n1j9cz2v5bd0dbmpbb7pggixjsvyx3dfqjkmmqxir3dddbp6d0c"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.34.1"; sha256="1ycrx0n2ignhmgb87is4qm6sv1z0m6a5c8sg3xn0cw9y4abjkgdf"; depends=[Biostrings IRanges S4Vectors]; }; - cliProfiler = derive2 { name="cliProfiler"; version="1.2.0"; sha256="08hvj9zk42hf4r0cdd5pqxm2mk15salhk031fqbbks048hnqs42v"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.46.0"; sha256="1nhkf1nchxf26b05bdi4qz1asyrbxgi80irx80w1scijn33yv3d7"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.36.1"; sha256="0c58kwrlfbrnzwgh3amjby1bbk519rx4l6767b2ivx6qrpxcng6p"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.10.0"; sha256="1fp5222wi91wk1fnw29gaiv02asidhrxzaq3da9isgjjvvr1gx63"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; }; - clst = derive2 { name="clst"; version="1.44.0"; sha256="0smr6kh6rk10zd2k8si79l3wdl2gdk6h3fh345a8m19rkv6sy455"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.44.0"; sha256="0w2gki24xf9m8qh1289hns8bkr7gj6big21lyb4p2mp652z1daw7"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.24.0"; sha256="1svj1xvg8cn1hm5snw8yv764382vc41m7q2qjwv7cfyv7ri3ai42"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.16.0"; sha256="1xd2kxmdg51hhj0zvz7pxmpdvb1sya7prsf9ny2wj2y8ivrqgn4f"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.4.4"; sha256="0k5jhry0j6wa7779n3hrw4ld4bvyahpgpbwi2a0g704m3dd3mqp5"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.20.0"; sha256="0rh9ql3f1z79hxwlnsv5r8l0cpqyr6jxlz38f1aakshdlwdxlkiq"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.68.0"; sha256="0p5dk9s3zrd5d2ap5i445jlkhjp7f8vh3dj3h59wya2n4phpigb4"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.8.0"; sha256="1c1lbgsmwafg9aa8j95x235270axp1g7mq41hmidc9mf4f6vclxc"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.8.0"; sha256="0hh9if8zhb4nfh2l76fjj364kcp0km78qlb0i67xlhj8py27bhij"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.44.0"; sha256="1dy0hd55h8ly4j4n713wal655j6p1sfpnhswczhn3k2xkzykb974"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.42.0"; sha256="152l9nnncyyz182cnafw8ipy94jf7mizhr6xmvp3l4qj9yixr0y5"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.40.0"; sha256="0wvkn62i4g3r5fg7am6mmwri01gr5g5dil5mp5w4na57h1svsksc"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.40.0"; sha256="1211fvcf6li32575p8638a6hf4a6bqqkx4jyfb8hpymhj5d4z5lx"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.28.0"; sha256="03b7a1b0g3zrh34ifjrylqdd1yi033lda6q71mir6plqr9y7fva1"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coMethDMR = derive2 { name="coMethDMR"; version="1.0.0"; sha256="0n89jv29mqrc2qjn7fv7zcn1ycsfrlsfs5ps1yiw5p77mq2rapp4"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; - coRdon = derive2 { name="coRdon"; version="1.14.0"; sha256="1kiw6kbbwqmr89mzppmgral0zxd5shmp53xyvbcr26fxs0xn1np2"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.64.0"; sha256="0r1srzx7z2833yvbnmdmbpkhy7irs4hdy2901bzqcwp91b4n6q75"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.30.0"; sha256="0xibcmnbaxsgq06wmh45263gp2f8m9llk2v5m2n1qlvcykyr7vwr"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cogeqc = derive2 { name="cogeqc"; version="1.0.7"; sha256="1dxywmwn0wsfvhpsyvrrav33bf4d0lszrll1f83514ycc9xvzqby"; depends=[Biostrings ggplot2 ggtree igraph patchwork reshape2]; }; - cola = derive2 { name="cola"; version="2.2.0"; sha256="1940aqpqnb31kkypnhrrp7lbsv70bxcqkcrjgjmc1ag58148mnka"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - comapr = derive2 { name="comapr"; version="1.0.0"; sha256="1m8jzgnkghwn7ci8jqr7zs4sj6lisnxri0wiw92m1vz9zibz3w5q"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; - combi = derive2 { name="combi"; version="1.8.0"; sha256="12rv2ic1y4ab4mj5jlrfgph9fbm44sqla8kqsjn2fwfw2zfzyfq4"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.30.0"; sha256="1b7aasmm56ckfhb8b6im0p6yvlbn6njmn2jyvc8n1x0bxrpy3nv3"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.14.0"; sha256="0iq19ca8jmdviacrm5aw6bicgnrkc84s1ywva8mc7lgwnc2fjrnw"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.32.1"; sha256="09jc7h0i5821piga3prqkhzk8zp29iac7r9z9m2rxlsv7lk2ynnk"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; - conclus = derive2 { name="conclus"; version="1.3.3"; sha256="1lgr0k1wf6a0dn4zvb6hpknr3dh10r3v81l3zlwnyfii5bnpi4a6"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; - condiments = derive2 { name="condiments"; version="1.4.0"; sha256="15b6zpj9ivj8i2rykd39ywmb8gyllgfkbmswrjb5jhkinqcj53lf"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consensus = derive2 { name="consensus"; version="1.14.0"; sha256="0hw9z5mqgnb0zy9sx5w96zsnnzywmlg7pqvvbs6lk33wyi7q42k6"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.14.0"; sha256="1vgkvqxybpnw0sifp3lxvg9fd0y93p5x5xx7acay0mlg1vnbs3hp"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.18.0"; sha256="0m1jw434b6pn7ymx9829nrvy1viqpl50d4mhvkpkx37qnv45qdfa"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.24.0"; sha256="1nc1ylr7mkj6bgxhyccxrvp3ybndr185c7ah9d3msvzp17497r13"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.24.0"; sha256="19spydvgkypf695lb8pvhslf8sv340ancz5hdhvmfdb1ghhb62lk"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.30.0"; sha256="1pzg6vvzskxdfkwwshqa0vi498vi9341bkc5dinihm8qvjn2h268"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.72.0"; sha256="0xj4k82q9547cls3dcs2wnlk6ssvcgawynsbmry9kqmjrl44ng20"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.64.0"; sha256="09g05jy46mq570dm0hs65j5axqswkyf0an68aqhl8g8kw0nq888j"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.36.0"; sha256="1gr8q9ri49x8qlmbsi6k6wcak1w9v48wr1qy7axc86brzx6z6mhd"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - corral = derive2 { name="corral"; version="1.6.0"; sha256="028av863qqqgvkcsnl5180h7ryxx0xs5ya0zpj04a80vlcb0ikbz"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.20.0"; sha256="02w3s64d186qhivd2a6adxi8jwdxd5cs0mpbfrijiyxd37allhpx"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.30.0"; sha256="1a0lqd4lgn2qx4p8d77dcn9gnymv42iv6jyz61rzawh6vkmj6f4m"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.4.0"; sha256="1i2a5xajxzkk7m50vavygsnb4wadmf9qkfip90554l69ylvvafj7"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.14.0"; sha256="0a5i0mb19ck65mqr4l695ngwj1qjapb3s7h52pn128qyywr02gla"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.22.0"; sha256="0l04bsqcdb8m61mwrvq0d2gx2iz1kn2fbryxvhj5rsjrf72r6slk"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.22.0"; sha256="031vxazqss5mi5clc15iw38xgc079vd17wf53fik1fynr84g5xpi"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.28.0"; sha256="0npggmics5lng86zsg132khak4hn15sb8w8qhxl19kdxiayf9dpa"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.42.0"; sha256="1qipaskv2bqgc733sssalzygcbhdlnh6cxvk3w7nz3wlmjar2yqp"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprBase = derive2 { name="crisprBase"; version="1.0.0"; sha256="0bcdnp56qyw2a4qmc5jkmq8cvn2n4kbmz0yavi8692myfdr35vlq"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; - crisprBowtie = derive2 { name="crisprBowtie"; version="1.0.0"; sha256="1gdkpx81gg7m1s956n57r6bk5vi3f9qypl93762x1hr0pd03xy01"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; - crisprBwa = derive2 { name="crisprBwa"; version="1.0.0"; sha256="157nxk2ymjikw2madbyjxbihcdjav3gg5xmr6i5jp8jsm0m4hpjc"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; - crisprScore = derive2 { name="crisprScore"; version="1.0.0"; sha256="19vwvjq7pw6m813saldns38y3rhg7a63f5cd5sly3qiai8qfa3bb"; depends=[basilisk BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.22.0"; sha256="18xiwjbssyz7dphiafqza5awxb6b4g023r3lq51mggbqczhrqwfp"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.54.0"; sha256="0znspkc8mvfq94687dzmzix1dnnz32nvv2pdhv9cay2q6sv3d6z5"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.22.1"; sha256="1qqbs11b5srm063igwddgnkmk65fsi7zy3ncl80q0bikn9d9dbcs"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.30.1"; sha256="12fyrg251g0c25vff3badi3mrw6lwhlxnq1xc9q5m1mq9p6151d3"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - csdR = derive2 { name="csdR"; version="1.2.0"; sha256="02r3waqvv4v7pjbw2xv41y46ammlm5s04hg0pwpb327ia6pz9c1v"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; - ctc = derive2 { name="ctc"; version="1.70.0"; sha256="0c9pgp25dqx12fmi4cqm7xyxjmy6g7wv9vbljgdjghaij2lrc4pb"; depends=[amap]; }; - ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; - ctsGE = derive2 { name="ctsGE"; version="1.22.0"; sha256="0scqb397cx61sn9xsclg80wwjh3fvlc8a7l3fakmdmy3jc667ny8"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.38.0"; sha256="1p4anmi436zykp0ir307g75g23kj8b7shxg4r65qq6zdwflphm0q"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.6.0"; sha256="1h5zpxlvnywafbssf8pk143xw5b8n7ixl1dq76msvvhgharqhl87"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.36.0"; sha256="0bypa4xww5hsby7hs7l4p1lz790d8sk0qvjvciq0ai4f7nb4gwjr"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.4.0"; sha256="0r30q9lxc3nwz90sv6ra7y2fdj04k0q1dz2hhw979v1yjndjqr6q"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; - cycle = derive2 { name="cycle"; version="1.50.0"; sha256="0kwn6wbxc5zd0cp9wpb7x9yaf3zcrrs1bjq83y5wp9xxj2cbmn4k"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.20.0"; sha256="07lz3smlc4lsl3r2dnjjfvpymcw8msh2695v41vnrpabij489srl"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytoKernel = derive2 { name="cytoKernel"; version="1.2.0"; sha256="1h49gmldw3bwwqsn05shsqxfwysxq5v06awn4v0dwnrxqgra0qym"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytoMEM = derive2 { name="cytoMEM"; version="1.0.0"; sha256="0p822gg2r1842csyyyrxwh8pr8qa452zij8h0n5wi52wwmgdli6l"; depends=[flowCore gplots matrixStats]; }; - cytolib = derive2 { name="cytolib"; version="2.8.0"; sha256="18b532sicca5l8sn334prrm7g1z1cakiwydccz4i833168pnsjyg"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.8.0"; sha256="1svr120n0a7mphi1nr6qds7iqj9dgdi2q0l6lfkx37dc89wd3nwr"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - dStruct = derive2 { name="dStruct"; version="1.2.0"; sha256="1wxvqs09aflwfrka8aij0sxwqwzm8ma2ab06wcs778l2gki230dv"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; - daMA = derive2 { name="daMA"; version="1.68.0"; sha256="1mpjvl24wsdmpgra3iasgfvy29m71318gj6j1gg6081w0n4cq72m"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.24.0"; sha256="0nvjnmcjh0i660y8s3rh9b3zl163wxdx7qm2n36m6vf0iy987l4x"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.34.0"; sha256="1k7a750gf0ww0s3pzxbd6ff5725321bq787z2r2lg6ysxh387f1l"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.6.0"; sha256="0cv51fkmi29cnba750fkayycfgsn93wh5xll0m5rjpqz7lxzc83s"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; - dcGSA = derive2 { name="dcGSA"; version="1.24.0"; sha256="1p0i81bh6knkyy0d86icsa4dcdx0mahhdgcg3fyqnzn6bhwhk3bg"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.12.0"; sha256="0c4x3b8azcrqlkhbs7db4qh7828yx311bx1bng6wy7121asni4kz"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.4.99"; sha256="140w6zf3vzi40n1gvlln88b0fk2dgyqfnjznizhsk9wnapqq3540"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.52.0"; sha256="03vgihxh8k33vdd1g96iwy69lf9zl3rg2bn0zdnbhrj7rfiqvj3q"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.16.0"; sha256="0pfscgbc241if2bj1xsj56nxcd31qq0wm39daznnjk155j5bfmx4"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.8.4"; sha256="1zsqsgf243gq1k57mw11d6apzccnq531mwg2wzw9mjrs1m0jsfzl"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang statmod survey tibble viridisLite]; }; - debCAM = derive2 { name="debCAM"; version="1.14.0"; sha256="1ynz57kkxl8nx80zhh1vhhydqb5n6r9d7p69f0k9nj8rp4hdgng7"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.24.1"; sha256="064dsvy5p9dibnk77iyq9ha4dqpbnr5gfmfykzhwgnkcxli9anhd"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - deco = derive2 { name="deco"; version="1.12.0"; sha256="18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.12.0"; sha256="04hg9bbga2s8scjxfd8wjlmr45nzzvh8d6gr0w929sybx4nj2qz6"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontam = derive2 { name="decontam"; version="1.16.0"; sha256="1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"; depends=[ggplot2 reshape2]; }; - deconvR = derive2 { name="deconvR"; version="1.2.0"; sha256="091z3lncamscsvzj63zzbw7dr7vnkn0jwfkm5ljq4112w4rxgrm3"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.2.2"; sha256="0q1w8yw3bwx8ai5z8rw8lz97w4cplxijq93634hza2vgkig1ck9m"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.42.1"; sha256="0bgj1grv3a5bqhcdsw445x49kl3pz367svy6fnrzfsk9bmj46kgn"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.10.0"; sha256="1v15v7lhxaymj2940k11z5bg5zpqsgncdpc4sxw8ff89m1ilwrlk"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.36.0"; sha256="1a2p4mx88n2hrg30gkilhisjf1hbnjqqv86hcji2ypz54axx7jdv"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - densvis = derive2 { name="densvis"; version="1.6.1"; sha256="0is5gxdd2m9qhdzkr8cs22f3kp5qjy45x9hcws01189px637pk64"; depends=[assertthat basilisk Rcpp reticulate]; }; - derfinder = derive2 { name="derfinder"; version="1.30.0"; sha256="1zyrfz26k8mscssfk7f0sjqgaf3xbp6ns89b4sfj2mpmf7m4m7rv"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.30.0"; sha256="0r7zbx5bfmh5cjs12y8d9qwz53nz340gdy3sx7zcn4rzn7rpslp5"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.30.0"; sha256="0wp4bj9fccqccyz6nal2y52j88sb9llli65psnvnz2kv2m30j23p"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="3.10.0"; sha256="1c85ky5ggdsi0ab1l4ipl85gc1kj1zv3wp08qrvslax3z0yw0ljy"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.78.0"; sha256="17m2m4srjafdj2c16lrh9kp82il5pnbcfhzn3kcyb1am2yyr6whi"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.28.0"; sha256="1gj3691ngsxkbh9n985jnm387xgcwy943fnjwfd03ycgpl5lv5js"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.4.0"; sha256="018bpkg39mgw0y67d9b2n1h0i4p0383wj1kk4jfldvh9qa3hl3n5"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.16.0"; sha256="0l9gx1bvr0s9nys8qicw04s6kp5h7dg377bmlnjylygxn4znkjdf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.16.0"; sha256="0mysylzmg24g7lm1xan4yklzqmskfgh53j6vjcz2gzakz5rq3rdb"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="1.16.0"; sha256="0pkr77x48p3k5ahn7jfshd1zrzwqy57ynp8crh1ji0288hzrw78n"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.28.0"; sha256="084nbx8sgdk3madsqgpia6jcl4fw20dzwbvphhbkws5yghf49pg8"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.4.0"; sha256="098wzm8hlpy70c99k2sl4k8z2dllhw7rwdj8dhcskr7kaw71k3sq"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.20.0"; sha256="0896ch07zpbwif48nz9n91gzsdkf7ax68vylhlfvz5mbgdd1cc3f"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; - distinct = derive2 { name="distinct"; version="1.8.0"; sha256="0g7591km80zz1jhy5d8ys9snmva79prx2v4sdm57whn93mxqyp0l"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.8.1"; sha256="0vi0hcyffaxp6yxsrq95bdlrhr85dvbqm9c7rg6a6blkfgwhlzb4"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.12.0"; sha256="0zh38cl5rsi7mx9nijhz8qrbjgfzrc4hgkcyywxady315zxfbl7y"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.42.0"; sha256="1ljxin1c36glri7cq5mgw929gaivdakqhssdyblciy4y8qpkxa3s"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.16.0"; sha256="1c99l62fi26bnbvpzrlsvvs722za0l5vfhddcrhzzzasabhccb4n"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.24.0"; sha256="01n0xkd0fkdwiwrnd28pk08yf2n0004q7n2w87wirw65g04f56zd"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.12.0"; sha256="1g793np07a9npv7vl8fwr9ijd7hbka6k101py3m99rw4wnp6dv0w"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - dpeak = derive2 { name="dpeak"; version="1.8.0"; sha256="07cv8yd95diwz9aw4d4wqhb5v75rjh8rcii62x0dqb0nf6x47gcn"; depends=[BSgenome IRanges MASS Rcpp]; }; - drawProteins = derive2 { name="drawProteins"; version="1.16.0"; sha256="1rg0kji5rn4zp111cl09dkdd6bichrgd87kqa1623mcxa9xcn7np"; depends=[dplyr ggplot2 httr readr tidyr]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.4.1"; sha256="1i9c9c7c83z3i3ldm7qz4wmf4p8aaafakcfyfgzdafhaacxgz4y9"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dupRadar = derive2 { name="dupRadar"; version="1.26.1"; sha256="0lffngmhbld8w2j1njbrk1y41iwbigm1ssac23hlq3p0djad4fxn"; depends=[KernSmooth Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.56.0"; sha256="0xciqggk4vm31y9zq05iirkrhb9wy5m8pzzdjkzd4k80dvsiny30"; depends=[Biobase marray]; }; - easier = derive2 { name="easier"; version="1.2.2"; sha256="1l2245qcbji1cv2rzvl3sf8xailr4rr0hiw0lqafk885qdqlxg7v"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.32.0"; sha256="1dy1prn7qjvw7kjmq5cgdd0yvpw167f9m2azg1wxn2xfrdyb5ipr"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easyreporting = derive2 { name="easyreporting"; version="1.8.0"; sha256="1jpgaa55zqnhqla0kid200c63ghwv0apm7p1g1z5ybrfxdlfrrkv"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.68.0"; sha256="07dax788x8p5dxwkw24hnlzkcpy72swzxl4ynhivjwixwy248diz"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.28.1"; sha256="1yp80qc6ji11ln8zxs3g3rm6k0jh2v20sqfm5h2pqlfw3nn5yqal"; depends=[Biobase MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.38.4"; sha256="1ww69xrg9qrmq7dix2k48j6akgn58ss3340hm7pjvzx508x1j6n6"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.22.0"; sha256="16ixc3bn5qkqy5w38428avzrd078xq5h2r8g0csms9b09hxmj65z"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.36.0"; sha256="0pnv2cfdkagq31v2q7x9yfzi1q79nj76k1i0d92wzkxh8j2rnmhh"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.8.0"; sha256="1c1nmrc6xvmxk40wiwrqysvnslrfr318lypd6qbgh7h3z5n70s0w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.2.0"; sha256="06wycza921fqycwff7fbyjxp64p7lyqinjglvwgv9jk85pxm1dxp"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; - enrichTF = derive2 { name="enrichTF"; version="1.12.0"; sha256="0fv50ma7jaqqbrzaznzvk6vza76if40f5vbxvl22s1ymk5chwk50"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.16.2"; sha256="0qh7bci3rn6y2fl45izrdb62jcm6j0zxxg4pyp4mvvgjvka5lnss"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.38.0"; sha256="1xllmsdxz0v0fg62piwxh2r96k1s4fykkznpn6dzqg749x1nzb68"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.20.2"; sha256="12n21dcimdhgyjzk33m6xbv0m9ihgyzcf66vr1jr5ycv3rq2s7xc"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.20.0"; sha256="1bi0pjmdvlvfjvl6m6r7hd3bd6jdh18i3bnk3s6vpnb52hi35a07"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.4.0"; sha256="0qw2wvrbfin2l80id06pr779l1mkvlafadkl3ja4s4nmn2ip5yfn"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.4.0"; sha256="1fingfn0rbygvlhkgva6999sw4xc8g7k6w8nm86vw3dz5c77mq5f"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.36.0"; sha256="15drlib696rylc4952rjnxrc0hfn5nskap93sz6f98b9v1g9gsmk"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.4.0"; sha256="13cfc86yz7wvjm3mqnmmcqq0q01w35s4vwzjhvrkwck1yn4kkpf4"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epihet = derive2 { name="epihet"; version="1.12.0"; sha256="0v002h96b4p2sb30iszcvfvnzqm5dnw8klypmd0496zcr7dqk8jk"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; - epimutacions = derive2 { name="epimutacions"; version="1.0.3"; sha256="1ga5z7w5gimzzf0zhqv3ina7vhjkas0pngjmjxpgmpk4c5z6v76j"; depends=[BiocGenerics BiocParallel biomaRt bumphunter epimutacionsData GenomicFeatures GenomicRanges ggplot2 IRanges isotree matrixStats minfi robustbase S4Vectors SummarizedExperiment]; }; - epistack = derive2 { name="epistack"; version="1.2.0"; sha256="0vlxdl99y1hl6pzsc55khgw5r102vvlfqlm2d7z21vnvxr4dwijr"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; }; - epivizr = derive2 { name="epivizr"; version="2.26.0"; sha256="1hzhx062qwfzg2fr61zzsnfzzkyn3z0i5b1pdxc99ba32qx1bphz"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.18.0"; sha256="0pyyypp75nbbxqcsid50r16qdhj280snl4jwbxqfjnqiyjh7wsrm"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.24.0"; sha256="0givnx3if0jrxaflrz89g0qfzd9vnbm4dxc9mkyi06z8nbnhvwd0"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.24.0"; sha256="0qs9l270pbpgrc1fim1spylbncgjkjrkd2mv2xvq7bvfc2h52wqk"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.24.0"; sha256="1i8s27sw7dpsd6cmpfchc4qby34jbyqabdm0xplva89jfjn40gda"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.30.0"; sha256="1nnxp34cj9zgk0bspq92jx9hi33777wdcvw3acykq9vy536ndi80"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.12.0"; sha256="1ilq01cr2ipxpmp422fikiz6nj4nasjhj0ikcagjn2zmmarpgi1b"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.18.0"; sha256="043r0mh4m26bx1r07alvidhl4bs8hxz5cmpkj6inl3q7xcv5wx0b"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.6.0"; sha256="0llvja5aaqybr3ksyl7f1qjga0ax920y5mgnc5qbqbgzn02zh1fg"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; - esetVis = derive2 { name="esetVis"; version="1.22.0"; sha256="1nsh1hybcjf8gc79zzsbjjfr6l40l4n5jrnhrx6my35fmfn1c482"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.26.0"; sha256="1pmk1x221hpds68yq2izwrfmvwd6v0gi0r40ggnlc9zrpx2s9fpm"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.12.0"; sha256="0wvha5ppx937b6qhxf95j0bwav07gq1bs2hw2q487mssksd7s1r2"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.42.0"; sha256="0wfigjicbz22dijibbcz38j7javlj891q2f9mgwjpg6pwb0xi178"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.8.1"; sha256="1vr5sijfddzss96zw560i46dgjw5jwrmi5dbgqjvbrrrr371sbk2"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; - extraChIPs = derive2 { name="extraChIPs"; version="1.0.4"; sha256="1b6kfs0lngvl6wy6a5d5qavls8jakbkjhyq7acrjgqnd94cqndr5"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; - fCCAC = derive2 { name="fCCAC"; version="1.22.0"; sha256="1dn8srjg505725l3arx3cajd2zf0lipq9sqhqrym7km4vlpj58qn"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.26.0"; sha256="17gdknml04m18ds0yjik8h8c778r0jqpd182yhzfzq2gldngnaya"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.42.0"; sha256="04apwymadah5vidbyg0ayp1lx6955c2626zgb6lhj6jhkhzqqxdv"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.72.0"; sha256="0q6bd3fv6s3br19wivaf2qpcxafw244nvipxixp8ss7a4zgn4qf7"; depends=[Biobase]; }; - famat = derive2 { name="famat"; version="1.6.6"; sha256="1fj4j3i632dysj5mj03dlbhjs7zmyrh485z5sqdxkj5cr3gjiw24"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - farms = derive2 { name="farms"; version="1.48.0"; sha256="1mnmgd846ayjx1g31pwk186pq6pv0sdq114axpq41728ai3v347c"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.32.0"; sha256="0q6zx6kwgv3lzl2gi8f6c9yzc6vl7kafjfbqnaa7q3a2h26dw9y4"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastreeR = derive2 { name="fastreeR"; version="1.0.0"; sha256="1skqg527nfpwknyj9k369l4qkzdm02dn262g8v3m4y75i9dw9s58"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; - fastseg = derive2 { name="fastseg"; version="1.42.0"; sha256="1cr1b1jbgp1z1zpf71kl7mljbm2jpi6b97bf3bll3gnagfm489hy"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.10.0"; sha256="0yv7ifw0xxx1v9z8dxszv0cb72q3frd74dyxfbvrcs6x9y9v3jzp"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fcoex = derive2 { name="fcoex"; version="1.10.0"; sha256="0rkxxf71c5w4pfbzndp7mvq5aqz6qab4msb8xafhf1qakm4gc66m"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; - fdrame = derive2 { name="fdrame"; version="1.68.0"; sha256="0a0vlji2knqkqa6waf6jcvvkhddn3gni0nnzwyhl1b48spqsim5l"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.4.0"; sha256="1qf9mf9zzli1l8m47slzxpb6j5gwn5khjgvw0abmw5y3m82r2fiq"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - ffpe = derive2 { name="ffpe"; version="1.40.0"; sha256="034w4q9rgzad5mhk1vjpsgdzcp3snh9bk322gc581sls17502wdb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.4.0"; sha256="0m2vr8ny5m635ycsk819l65ppfwlyymb5vkzma0w0f25z328cg2b"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.22.0"; sha256="0innyggai6l4fpl4qrblzdc52vqw9jaszmip0yr1lv7rzwyl6mpg"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; - fishpond = derive2 { name="fishpond"; version="2.2.0"; sha256="0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.52.0"; sha256="147m79v00gfk4fqjy9skacscnfyslxz0i9y4g7a5vwxz3mrrzidc"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.26.0"; sha256="19964p0gni9x61fx24alb713dqyqd816l8s6azm6q0v89y15rqzl"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.34.0"; sha256="1nn19kv3z0pv3hbvazp1x1lmm8rjw392q4d74rsz1hfwz0vj9j97"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.32.0"; sha256="10h7jhadmr1l8qw94fsxcrq581ir9136w91ah84c95m7297nr5r8"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.30.0"; sha256="0zj76ymr6cs27pg0k9gwzr67y5c3iav40fs4rjcjsi26bv5vxpsy"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.34.0"; sha256="05dcxl99sw6d1ngq3wl61y1knmyrf4l9b7nrfmcbigb1isxgjy26"; depends=[graph Rgraphviz]; }; - flowClean = derive2 { name="flowClean"; version="1.34.1"; sha256="0zqgccbfqm6hpi07i5nq5gd626imb6w5xkfb6q8pc0nkkz48mrfh"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.34.0"; sha256="055vm9s8aha92znhpjqkipzprw8bkrinwjaik4ygmhym7w6vbblk"; depends=[Biobase BiocGenerics flowCore graph]; }; - flowCore = derive2 { name="flowCore"; version="2.8.0"; sha256="17nci6rc4i0vs0ibw5q8zy30ap7q4550qpq4ifkbblqbyzxlzkhr"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.6.0"; sha256="0p8mgx1q3hw9pfhg41mv9pigx0rakvhsdx5f3dlsqdv2ll85gi98"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.32.0"; sha256="0hrccry4a5m3gg9zkawvhhlr4a3062vrq50gg5c48s0jvdng03hx"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.30.0"; sha256="0g8h43w9cb8l8dz14lahxqgy7ras48dl06c38b8j9bpissav68f3"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.54.0"; sha256="0hmlajm6vdzrx3vmhi4wv4l0qszqc7z18ls361zrk1679nyxa4ms"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGraph = derive2 { name="flowGraph"; version="1.4.0"; sha256="0im9mjyynfl7yda6xcwbzai42p2q0q3g0f0j82hh044lidhpc14d"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMap = derive2 { name="flowMap"; version="1.34.0"; sha256="1yiw3fs850yi712bcx5j1v8sh0yavqzr0hnlxjbx6rpfp9wnrs5a"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.32.0"; sha256="095azgkvjc5h4ycjgdw846gn4qizw29xmk4l5mqir4yvnlhxzaw9"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.56.0"; sha256="1n4li43ydwwf5gvgmdml4ba28cxymybg5wnz6jvp35n959fwxv6y"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.44.0"; sha256="00sypimyhjgy44jh0ba200by79kgypm7yyqy7hr7y80rzxgkn55s"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.42.0"; sha256="1a35ss0szgscfkvqvpdvvb9vgclhml27ggj7rpw4ndkl0m61565f"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.22.0"; sha256="0v5yci4zlf94wf0zgzdbmmlx0hcx5rz2d1dzmb0w8b6sckfvi3b6"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.44.0"; sha256="0z38qvn2hd4ar17g8vp8fyj595nsys3yhb0m3fvv24mh48vasp4y"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.10.0"; sha256="1kjcphza5prrzc52aavshyshs2ck0spayp5jvrgk26a2dpk6xqhk"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 hexbin reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.8.2"; sha256="1x01gg5ifxh3wp0cp5a23lr9v6l9q5qg8145q2pgn904jkx5wldc"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.20.0"; sha256="1vv6s87brnfrs52s8rspq1xrs6ymq6gcb78ci7dvjj26y3p8pkfn"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.48.0"; sha256="03amxbhfi3fkk9ip16bvdfnlqzi1by2xywcm8bd9ndimpqq12y8s"; depends=[flowClust flowCore flowViz]; }; - flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.28.0"; sha256="1fhfmwh7ji3n823zl410zcgz0nmjmbc0awl3149vvl2s0p93jj2d"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.60.2"; sha256="08rwzc26jns0wwjsqqmf60bpxsckr5x8skdn9iwl8grp81npcc95"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.8.0"; sha256="0riyi9628cx1j5x6hmdd28yq75xh25j8ckcdz8dnb94dpvnhaqss"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.30.0"; sha256="1ixq18rmarg4kr6l747699b48zz6cj131zyfbmj5i28sdmbwjk1d"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.38.0"; sha256="1mblmk21dxc9v2fikhvfg2njwgl190gkysppl6msxizwcmxsmh30"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.6.0"; sha256="1jds04azfjdpn9pmmh0ghc274h4iqz5334gv6aq30w2m7gws35nz"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.4.0"; sha256="1y50xyiy02zpnvvxfp0sskgrp515m2d54nn6gqjsdv0vv8wlkvcs"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.8.0"; sha256="12nixzdqkaxfv3jwcbf20npc9hpzkxpsm4a5znivg8ac60cw286p"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.48.0"; sha256="1w0q34jkmzqwdjxl4xrvg5nmv11n4l2qf180fwrknvp8am6nf6yx"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.48.0"; sha256="0paas86hfqkvcgv00bbgidcaps8p3gvmfy8prq4rcda4lv8i67bl"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.20.0"; sha256="02wkjj2nbghwa0ybmh58hl7r2863h9nw95rsd42xzvcp9vxkpfzz"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="2.2.2"; sha256="023csgiik16k72jnb3322qvbrz0vl6pkmdmki29jlj1wmdfz7x6j"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.42.0"; sha256="17a2a73lgmgmrkznysd23c1qbddxcsnjdma7xa0pfjwrwskcisxb"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.46.1"; sha256="01y04jcy7a9fksyhj0nq37n1inkrpqf4qv117lflvipbx0dsw4gl"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.64.0"; sha256="1w2819cx7s2hazifhv8iw54jjcvzacjwcpix045ay4fa98ryg7fz"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.24.0"; sha256="1dp8z778ca4pj8da9nlhm80845mv4k7njnz5q4cdy7w1bhlfcjb7"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.20.0"; sha256="18y1xs8zy76j9vbxmx7d6g3rd2mw8diib083948l4sr2ipnb9rvl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.26.0"; sha256="1b6iscydh2c70dv2m5qdjf6zc3wbmk2jk18x00rbcxl10ckc451a"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.68.0"; sha256="13a8igr2b02gsa6n3437kb33wg6h7si82fmqi35dzpfzhvx0qf6d"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.32.0"; sha256="1cdwyivgfc6yw5hj9b3j57wx55gckwhx6fwx2lvqynrjzjyzf3q0"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.36.0"; sha256="1kh7mp5h0n7yd1klcd7w4v7i3fh9pkmvgf7189wangfzbcsr4f70"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.10.0"; sha256="0kx38b5xaksn9ikk98b60hnalnxlcb9xs3vwbwsn90cg9h94cdar"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - genArise = derive2 { name="genArise"; version="1.72.0"; sha256="0jmk7ddwvh8hy9ri6a6rfhmbaglpqq43qxh1hjdw5k4ci87l7kd3"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.24.0"; sha256="141adiac75vn232cn8bp1skzn2h4ns85k3g5wq179b6y6mr4zcv6"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.22.0"; sha256="0f0nralfhzv59q9ia3mjdhdsrvi34z5mafgxb6gsb3ilbvx0yvz7"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.20.0"; sha256="10kb03lkac3cc1pagl6az0phhw8nhmrckarshf9xqncj99rslbcw"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.68.0"; sha256="1sl8mlz7nzskixjh5358wx4jvamzp5792dj2irjbfab2cr3kj8lc"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.32.0"; sha256="1q9l7734n2w23945x5sfi5yrvs09fq9b62y1li240amajpdqws1z"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.22.0"; sha256="0qbhgarlr71fpg1ggxbqnj4h5n2wywl2zm95vdqr6vypplg6hjfa"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.78.0"; sha256="1lp3alnljhsil8zylf8rvf8ik4wmsyciy3ij4rr9l4191dkkp4aq"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.28.0"; sha256="1a3q0qh5z5zva0d4jz521pcmig12h1hib3prbnnw1a74jxryan1i"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.22.0"; sha256="1k3s6ic2bawa690s641bqa3s412rk628cc55dwd3i43064ff25rc"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.74.0"; sha256="13230mzrdralnvf9jp032s16a8mk3kx5476nnvpa4pvcgp1i1ijc"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.48.0"; sha256="0646y4y2wv367gdj0cy78hddyy0h964zz5ij8v9lzs0w63a72497"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.28.0"; sha256="0rvay7gs4g2wi6h42kln8xwy9b05axj1x8mkfayl6pnnlva6xj79"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.52.0"; sha256="1b2i1bdl9n1a7c9v8757w76s1aahhph6y0a7z9axanb8g8gx7bdp"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.26.0"; sha256="1a8cla2k3x5x3pvxahzl5vfym5dxcffggk1jwzp91qqkp6dss0jf"; depends=[curl readr]; }; - genomicInstability = derive2 { name="genomicInstability"; version="1.2.0"; sha256="1lx4ln867wxc2bhn24s7b4xsrb1lymq48lw6dkc4s9dm98h49y4z"; depends=[checkmate mixtools SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.28.0"; sha256="13pyr82xcwzmch9w0rlzlwzis5qs9fqsy0dknn7n79jj5ws6snr6"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; - gep2pep = derive2 { name="gep2pep"; version="1.16.0"; sha256="1ry5h095gg1kq9idsq94dz843ldf6jz1pyg9sryfkszzyi7ddfhh"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.28.0"; sha256="0i2r79k77rkw7yhwvpzif1m0llfxv42i9inad7i46630dxpwa1bf"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.6.0"; sha256="0c2air5mra7g80y7r7qpy2hplrh2k38jj5zn4sa5a4fcpniifx7v"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.4.0"; sha256="0zc9zxw2bifkkiqivmg8bf8xn9sff13bih55k9nxdabsgkkwhyad"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.44.1"; sha256="0iyhjalwq1jmldpn20iv8l2kmz6sm20ddry2yz2zn7yq0wszp3vg"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.24.1"; sha256="1cw60x78vqzjmgb5xd3sxyz6zwdaffp3byk34z8d4b3wkh530325"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggmanh = derive2 { name="ggmanh"; version="1.0.0"; sha256="0bcdjvhablnxvakin5a4yhdpv5y5n9rqm21yz51mwjdfgz00p2mb"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; - ggmsa = derive2 { name="ggmsa"; version="1.2.3"; sha256="12s6bs8b8lgcllc540dn4mjdvij2cx28l7zgnz8yzcb05dqnisbr"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; - ggspavis = derive2 { name="ggspavis"; version="1.2.0"; sha256="0m0wfswz1jn7zhq527qa7q1x028zzrhg1zkw781w5p5i7ky0qzqf"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.4.4"; sha256="0h1qlhn4rj7jgd9vrja7lykaglyfvnzwkghvsqj1mvp4niwli7y5"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.6.1"; sha256="0jhk2wqw8mi99n9063wllbl4ajrz1lzqdn7b827316q7ynh8z6ma"; depends=[ggnewscale ggplot2 ggtree rlang tidytree]; }; - girafe = derive2 { name="girafe"; version="1.48.0"; sha256="0633w8dyzrwqgnzj7zhr1hwqh617qpcp7cvs33pgsyxmdh52i32p"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.8.0"; sha256="0k1qyljg89jvc4g3ixv8n50a1fmw3yfa7xjdvrfhbk3xsm6n1lh9"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.14.1"; sha256="0xpbxgrfrgysnfcj757a0i9235pivwpga5xz052izyw2p5nfrlr2"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.24.0"; sha256="03fb4cd4nbyik7qjblq1fr94gn2xv6jvnb0jzxksdfb7lj8b0axi"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.50.0"; sha256="0mdh9xm9l70i5y4783xv76arx0601w6sz3l8h5bmpsavsz8kc9s5"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.38.0"; sha256="0xmc9js5wpnaggf3ldplyxw5w4f2abavlsfzirr2qpik0ha8f7v8"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.8.0"; sha256="110pdblqnr2flmb2gvba6l22p6mrkrqzd1fi3c6pr80hshs7gc95"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.58.0"; sha256="1cdnqsb00gbf9ff9bl19inkh20vmppnda2ib85alvwdbzmhsgflw"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.20.0"; sha256="12ks45lglc23ipkbn89vdlf8l441g9kd2xh49qwinsj6c8zvmd75"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goTools = derive2 { name="goTools"; version="1.70.0"; sha256="1bxxwrn420vlwkc9jn8jjrvykzzsr7j11lb6mv0i1zrkwpmcmcgp"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.48.0"; sha256="1w0rwzhqkvp2x7y5v0qcyjbss0p95gb1jrnx5sdkqginbvrmrd48"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - gpls = derive2 { name="gpls"; version="1.68.0"; sha256="0ai49lk7pba7k42p9wb67sp744gvkkb2rgfqzdpdwnjmndfxqyib"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.12.0"; sha256="1g6zxs0wjj6fh23iv65iagyc8lrnzdjkbjv1yf8fq57brzhdl8zl"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.4.0"; sha256="0bw07kcrg3cwd73crfgm71hdjrp9pprrg5mzx55rmabymn78915s"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.12.0"; sha256="18dfk4d9cxgzmgb8wbagd1qlvlpwgs6nzdz6nzif6n4l6jg8x4b7"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.74.0"; sha256="1b8hrjwjg82kicls1496fxfzv75xjvq2k6r9apzsd3qlbyg3ilg4"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.42.0"; sha256="0nl5mkgrvf7vsqjy48ij9b1dmxfvp9lf8cpay55h93c4qz4x606g"; depends=[AnnotationDbi graph httr rappdirs rlang]; }; - groHMM = derive2 { name="groHMM"; version="1.30.1"; sha256="0v2mk7xcy483w2nygpmyjp73kj3v5pkk1kf1wr41n33dxqlddqai"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.10.0"; sha256="1dymj9s11nqjv25a3adnhllkgi5dw5lvhgxkg6sd7qpkh1bvbmrx"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.16.1"; sha256="1wmz760qyg281i62xmizy3p2ajfb4s99wnss9h9yys2skmqcl1vg"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.28.0"; sha256="1s4xczzv6hz2kyv32xgcq84540w75qr3f644w1s4c3kwxgyq2gff"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.28.1"; sha256="19ymdxj8966i4yk0zalfw23938cpv4q7pywg4qb242p44na5y9sl"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.14.0"; sha256="1cdknh3ib417ni76wcbns54syqycslj0nzip4pw3sqnsif361ak0"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.30.0"; sha256="01vvf4bf4a5sfj5rz1b3bc8smvw3j260q4q11bqbq2xaw5lg64q7"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.38.0"; sha256="1l50p1hnym8amvdfazp36zp3ijbfsgd8sddbcqivd3rp01898mmr"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.4.3"; sha256="1ryac7jcv17lcns8fja24iwayq4sl76yh4xcyv12pp5f5jgpsv1y"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.20.0"; sha256="137cblqfn3w2nrlkffrxhpv1fd0ygy8njqf3n09gf2qw4vgzyz0g"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hermes = derive2 { name="hermes"; version="1.0.1"; sha256="0l4rynsz03s4rrdf6pn7sq6x9ra11lal9w65fwxvg1qk83b1gcx4"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.30.0"; sha256="0f1imlql09dgckcvf3dr7knr26yjs0r1ryrq54r1lwz57s3rn152"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.32.0"; sha256="0cf0ris5c2xbbmsjnww9lwmmlhya21gmhxfsmcid4bi9gs94qpci"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.26.0"; sha256="0n8rbk3whs6ysjkdz6zwvdbw5gqrriyzdmyz2b09h6w1dl61cy43"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.14.0"; sha256="0vls36kpz72vahjgx9ghb6aql2f9r5ny9nyg161jjfs1k4s2pr6d"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="2.12.0"; sha256="15ggym814jkcbx4kn2d9zi430vcgr50wbzvzj2f1d5qbdhbci9sh"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.16.0"; sha256="0njxxbm58r6ikdh8j3765zy15paips94qyfhbbpb0xpqz7i1idcf"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.56.0"; sha256="0c2dx9l2dvhx74z4g2wvbz7m1h77jr257snlqsv2fkdv32m623k4"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.38.0"; sha256="07c6r703d5xp7y9bqmqalxgna2qrbk1h5s0d992m7360k259mgrj"; depends=[]; }; - hummingbird = derive2 { name="hummingbird"; version="1.6.0"; sha256="1zy35sayjclwcvv6agnvshxhr6l7nd9l0pxyxcfhj1hrqnw5xn14"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hypeR = derive2 { name="hypeR"; version="1.12.0"; sha256="1yk5119jv523kdh3sb85sdkbvrjj4xml8697l3d3f1n84qkicks4"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.48.0"; sha256="0ndw4y6b15jy4w86vfkahmdc81d3ycjsvqy1mxi55dwvd8xq0ap6"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.68.0"; sha256="0xmryqj5yw1ns6wbhjqbb6h14jlj89zrznzvqnvd4n03ci20kzzp"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.40.0"; sha256="1cwx3pc17lrrskzrq2ghj1vgjc2gmnwbkid531qpvdw0ixqb9jhr"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.40.0"; sha256="10p9iky61ym8bj1mpyjpslg2ixb3abic5bpfp4yqaqg4vq7a7wip"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.36.0"; sha256="0715hr72wvm14f6vb3j4ns94ii8g7kp6fgb7zjdjmqab92hqm1rd"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.24.0"; sha256="1b09q6z240rc4cx9mz61f1l65khwxlq03f2sal0cf1y2584p4hxl"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.16.0"; sha256="12fyj9nxsfzckyb7qjwg8a4v335hzg0d0fgav3g00i30c7ldqlam"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.24.1"; sha256="1gvra5bgsf6lvs4f2md3xx7xxsx4j8079c2nr8vz9lvy2sfyl6s9"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.26.0"; sha256="0phc4xr9vclmd2xkcjaa5l8w6v1748hs63asfbl0xl6xgj5475mc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.50.0"; sha256="0p5n20yjr94l76ibmlcvbq48zw9a14dpdza0k0mg16vq17lqz2rf"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.32.0"; sha256="0xzx3vly3p99zc5a69pra4jjp8d3bdhx7dl1l76w459cs58zy0sm"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.26.0"; sha256="1brdkdclmydj44485irzwva375zp13mf9vjw5xd5lhdq88ishnsc"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.40.0"; sha256="1h7dxq6isc5zbpi01zj4xsncs9a5l4x5lflqv0lfi2n11y8y4x40"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iPath = derive2 { name="iPath"; version="1.2.0"; sha256="1gkw3j3fc5rydxzm3dhv10wwvnhgfb8hic1842irmnb3rqwg0khw"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; - iSEE = derive2 { name="iSEE"; version="2.8.0"; sha256="1smpd3hfs415g4qiz3s9d8qsy5n84ppy23q0vwhfg8gh2lypikzh"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEu = derive2 { name="iSEEu"; version="1.8.0"; sha256="1j0ksx6sdk0g44yi3dccgnqhf9jqfzmax131d52q2s6yfn1m1dhw"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.48.0"; sha256="09zba3mr55n42kyw89r4vbykczq3y97hsy2a55a2b8zmsh27w2dc"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.14.0"; sha256="070bda8fxm1gby2jq5zpbd85l10kxhsy7a8jac3s6rpf1saz70m1"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.44.0"; sha256="0l7436yk3hv73zljg00mxa5nyilsxphhwliy5h3a4ci02pdfa92k"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.14.0"; sha256="1n642pa32yr6lmz4362875p5f6z1zdxdg96ljxfc1fsfkvdhjv0c"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.20.0"; sha256="0bgc7f2c1m777acmfx1lcsiga8kf4db6wx0rb56hwhq2yw2h1x7r"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.72.0"; sha256="1w749dmbmgwrbxdpcakd48l6sfcshafqhlkrq5gzb6bhq1ll3xwy"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.6.0"; sha256="1xl73m1lwy0336r5aan8sam8ac61h2flapj7m1ag0acpy0bhvg23"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.10.0"; sha256="0la044qyjnic6cbnvsas1dx7xgiz64qp4ygpsb1g6qhk2m0ybzj1"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.16.0"; sha256="0jaj600dcis1xd4hp6zw3j92zqi476zxlnb3lhcsszx7rg6lqnfp"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.38.0"; sha256="1xk057a9w4ps8xi8jyw8imkjcicfmzns8g92grn4af7yiip68h62"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.45.1"; sha256="18cv1mss1vgm4zwx37nijc1riw2n9lwl73l2cfiqglblgdmyq2sm"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - imcRtools = derive2 { name="imcRtools"; version="1.2.3"; sha256="1a2gapm9642x7a4m9cl95fpl6qq3zrhgvib8rqzx465d0p47szfw"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; - immunoClust = derive2 { name="immunoClust"; version="1.28.0"; sha256="10dwlg91wg38s97hivd8fm4wkmv0nv7xcw8dwdh2g7m5pip7nchp"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.4.0"; sha256="06yknvqz65x3vgc9xykdwhsgqhz75jr038fwnjjr2ir8x9h6fri5"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.70.0"; sha256="11b0z7py0im6y43k55xpzz5jnvc0ram9rk3n1n4mwhvs0vhy39r2"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.12.0"; sha256="01f021fdxm058733rky46dlvqg7dmf5mn5x9lnq0fspp5665w3bl"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix parallelDist phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.6.0"; sha256="14qdamv4ydbqwxw7gfm1yqzgihb7zxpi9irji0a5mnvvyrkzrfpz"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.36.0"; sha256="1x7386g0f1amjhvpb75ma86ifagh73d3yqmh1aq25r3cwgkgi9lc"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.6.0"; sha256="1jk2mr271dabwjxz3a0habpy0cs6gh4wcdkl9yfb17g41qr3gd1s"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.34.0"; sha256="0flfn30q4qd0dp39qqswvg83vs568spbyiplqnsrp85nprnrxk9g"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.34.0"; sha256="0fdwx5ch0ch8axdkfiq7zzhhq5hwcvd6kf8fggw9nd3ah1yjwbdg"; depends=[BiocGenerics DT shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; }; - ipdDb = derive2 { name="ipdDb"; version="1.14.0"; sha256="12wnl8gpkwvp3lvdw5qfjy8n2wpwgm7hgp0cx4lysyr7hchfjzi1"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.42.0"; sha256="1z8qxdd4kqdi55g84lb8268nd270y4knzrpcm3b1gvxd91pynbq4"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.24.1"; sha256="14a9a5k435yn4csbhmh9yplyn2k889jhrav31bsaiixfms16v3k8"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.18.0"; sha256="11j6ssy88v0wxqkx9b4skqi8jww8b4nh1gjl8smlnw98lvf5vwl4"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.54.0"; sha256="1ykn4cac33w85gxh1bbqcg06xx0jsx1ivq4477h0057y3vf09cck"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.54.0"; sha256="0fll6aqmh4dbrn4pv8nwp5cnsc2jd40clfnb76zzgi6qka5h2kms"; depends=[BMA leaps survival]; }; - iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.18.0"; sha256="04ril40rs4y4j8b8pbxxgj3qzxy5n7vcd9wfdmfr10c9j489sixw"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.22.0"; sha256="0hawq9wi3ikvlcdgnjfy5fiiwfq22zwx1p8xf5h4bpypp96pknsk"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.30.0"; sha256="04ipdf3vcmg2817i314vkxw8yy358iwq9i23f1bwa86qq0a1q6f0"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.48.0"; sha256="1a5cjsp610pvr7s27schr3hi06i47v73f0f6n5wzf6062cjvrrbh"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.16.0"; sha256="16gx3cpmi1xb78g12aiajm6k93fx5wk0j82kv682dd2j8qzfxq1n"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; - lapmix = derive2 { name="lapmix"; version="1.62.0"; sha256="15ydcqvawmwradx20x5jz0lrvfrgfjxgnfcnrxxknv5iqh2d035y"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.26.0"; sha256="08ss03b93czwb4x60hsi30ad4lmamvq5mxa8nj0g18z68qcraijm"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; - lefser = derive2 { name="lefser"; version="1.6.0"; sha256="0n3gf60c4r1p81ifn4xklmm3npp790p8vw7mdi1f6bb5vm373rj0"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; - les = derive2 { name="les"; version="1.46.0"; sha256="07c805gcyc7b462hbkvkkjajk8sn735j1js452lz67ixf03pwcaq"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.14.0"; sha256="1dh314yd0zpnmi2vfnf41fhzpg76cgwgzkbm93vcxwrszj53cljc"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="1.26.0"; sha256="044866h4fnxmzb3sh9vmrd2smgsbcqgvd19dgwxisi418cad577l"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.52.4"; sha256="14xy3qyra2crz31sxgz768mhnhhvcpfhfcigf4xsii643lqcz75h"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.72.0"; sha256="1sq20bdnc9j93iink9cs1p50alzgqfjcxikr8p0dfvd96c4js5b7"; depends=[limma R2HTML tkrplot xtable]; }; - lineagespot = derive2 { name="lineagespot"; version="1.0.0"; sha256="0bn0rr7c8x576p53d7p7q0hs7dh5y7dm4z5dgcrp9m8pqgdq3n9h"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; - lionessR = derive2 { name="lionessR"; version="1.10.0"; sha256="182hyz7acnlmprfn3555d1li73abahkylznrnqzizyi20r3nwczq"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.10.0"; sha256="053q300caqn2a5rjxxc6c9b5drrk1y6bllm96rb7nxlwxzkkjlpg"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.4.0"; sha256="0411vkzz5rh937qcamrsmyvrjbncjgj961lmvd9vqpbf2srvd902"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.38.0"; sha256="1x56d40v9v0jz9dmxqkvpc756fqwh31119qx1bsamrz03263fhw8"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.16.0"; sha256="03gqzjn619fz7c53lcj3p7kycdl7minmv81zszf0jw5m8xgab7a5"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.16.0"; sha256="06y064fkns71m4h7w7mmf75myd22zv000g7drkxwx25x6jqghcgg"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.54.0"; sha256="0z8yphvca5glhwbrzdd5vz07243akm0fyyx8x9004frsyqrsyyva"; depends=[affy]; }; - lpNet = derive2 { name="lpNet"; version="2.28.0"; sha256="17l7k07vf21y4yw5s640xp4lh686y74sd773ij92r2spc3vk4bnm"; depends=[lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.24.0"; sha256="0kc708ss5byzw8qh439mb4nq6hsfmz73gfamiznw3lv352brd33g"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.48.0"; sha256="06zmll5j1yymsm3byarhllrz4q1w5mzv267a9g6visn73wan8y9d"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - m6Aboost = derive2 { name="m6Aboost"; version="1.2.0"; sha256="0qi7l52c3m08i4c4vj44azycb5qj99qnjmkpl5j9j13scpancnpw"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; - mAPKL = derive2 { name="mAPKL"; version="1.26.0"; sha256="0zzfdwjssig6km1c630jx8pl0q20c5y16z6jrms43zhbk52h2p1s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.50.0"; sha256="1gdd5jj0dpimp0ix2i7dspkkggn0m5d36cvhsvyr0y5k3gq5cail"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.16.0"; sha256="10g46k9ryg183dhaakmbjnpqhx4a4q9r1fjf9gfnpaycspmh7hx8"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.66.0"; sha256="018hc5sqp23cmfdr0k4dgx9rwl3f6f9fgab99h5hlg8rrqhy2abm"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.34.0"; sha256="0rn3s0lpbrdkhbqsg94x4b2fwybrpfyys0ih2dkdscdc9h9dapyw"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.68.0"; sha256="1l478qjx3cx6xc9j5gl3hv3dbrglrd2dgsifvpmw64y6a00zz09g"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.66.0"; sha256="0nh2wn8zyipm2sxxqlj0nnghybnxc2y77h031c3maab1c6kjmjiq"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.70.0"; sha256="1w3a0s5p93zhx8vrf0qmspisnm3gf0j1z8l38wgc86k0d9zjcbs8"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.70.0"; sha256="1wrv9d2mp799qzy1bsaj4w7wx12gdhfv9qvklz7z41vfz59d6bq5"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.12.0"; sha256="1gqfi95v4fs64n4walij0g2kds3fbbwp6lih5yakmgf6kj8fpkk6"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; - maigesPack = derive2 { name="maigesPack"; version="1.60.0"; sha256="1imqs7jr3hnib90dclwfxx5cagf0in8zd0hz3jqw5x2xyfq2mzbp"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.72.0"; sha256="03lqcrbyasqychzay8iflkdfqsbsncvaxmn3g3nwr9p7l726gsik"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.20.0"; sha256="1x9446fakxmnpkzfk541kihc95y2ilnvq7v9icky4175s70492w4"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marr = derive2 { name="marr"; version="1.6.0"; sha256="1y7s30wxk75qk2w19irs77kkg7kghs247h6n4abxvnv3wq4ygwmd"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.74.0"; sha256="0awfz0akz3sylyw1jxhxgadv1rqdzvy9v11933yxkl9a8m9ngm8i"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.16.0"; sha256="043pl5r2ahnv6i7x1yd9pvs0v4xpajyxick1liivp4zrgxskpfs4"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.14.0"; sha256="0zl390lcahk9ipadi8jj25jf50dv6sxsmi54qj1nzq0q6qh0hyay"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.40.0"; sha256="05aznwh5jmv4bd5s2gb6kjwz0zn7523qkpygdlrb5pxhh1vw1b5j"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.32.0"; sha256="179f1fd6xxaq7hwk6pixp3pbqmlx06mb7kin4ajwl5gch7kkr2qn"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.38.0"; sha256="14jhbfvi6rwal693zbmb00pkzhpzmhib5ihr63m2y1ccmisnfqkp"; depends=[]; }; - matter = derive2 { name="matter"; version="1.22.0"; sha256="0pgi7vq1arrdhqyc34dkylbz6s4f1wx8j38ddk9yfi8m45nbhqig"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbOmic = derive2 { name="mbOmic"; version="1.0.0"; sha256="13lb639g3cg5k6y215r40hxn2g5i4flz0cyxgs3nfn7wf3y2cfyi"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.12.0"; sha256="1f5krzlyqljz763vkp1a50danjn78xhn35s8qqdvzrmwyx0fzphg"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.16.0"; sha256="1r7w7mzq6a31rjfnpbanvvk95nai189bggw4kj8y08k8kf44hsji"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.58.0"; sha256="132spf0yhc864f8adsavyljcnmq28p1cpw8clb0rsi1v3hrj6kn5"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.6.0"; sha256="0qq82dmd3drr2bhn51bgbc6ml40klfmmhj6wdj72n9ya6n60lwy8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.4.1"; sha256="1s0mdfhvq52vg3494wgh4ar8vax5bc99gqsaism3d7vi4h9wnhzn"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.22.0"; sha256="1affs7w2rwzkl2gh895ixwpvmp158acx1i4vcjg25gvak3wnwapq"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; - meshr = derive2 { name="meshr"; version="2.2.0"; sha256="1gaxjz5day6xipfh8dy0nxf7vxnvdy9b9hfdp83ysyhxszb36fdl"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.32.0"; sha256="1avfj9xdx1mi7f1sdl9j1xf1jhj5cibkiwwy7aa1w7chz1mz8hr4"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.24.0"; sha256="1shpb8p7rxf101k8vy4nd6fllgfm3jazv87h5qk5mhfcfrja0819"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.32.0"; sha256="00mdv3k3qndjznxixvnb7v764wz8c6zh2jzm0h948ra3ap345fga"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.36.0"; sha256="0775xgvmcaqf6pgm8651pcnlkd3adwpdzac295g1xmcwfj3r7sav"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.6.0"; sha256="1vnh0bqfzknpflk0j5y9jxggmc3m4irxyfbkm9jf6k5a30fnmmxb"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.6.0"; sha256="0mg7wrg8qgv11w7179nrw5w7209qjqbirm9niz2ygw1pidg0slc8"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.30.0"; sha256="0z02b91gd71b5ksfk2ql5jldicsqh66z2yvv5yyws98xl0qqrrxw"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.28.1"; sha256="1r6kjwbwhksmk9kpvpmn9zwlfllznpam880ma4imsz6pgzfxsskw"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; - metagene2 = derive2 { name="metagene2"; version="1.12.0"; sha256="1606i1kw8i4q1m07x2yax2mfmj9knzd7jiqgzq3fn792z1yj1bsb"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.38.0"; sha256="0v8h8ld4gzq0v90hfprw3v8j2hlac44wxyj2m6qmz0y5hml97k02"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.54.0"; sha256="1y8pr873jy1ax8n8qp8kihagddk5j03pjwmxff03amnqrnxyphlv"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.4.0"; sha256="19g9c08alg4qqr710si465wlb5dy759m5d8wn91zwj24077dds7b"; depends=[Rcpp]; }; - metapone = derive2 { name="metapone"; version="1.2.0"; sha256="11q90c6qif030xffhfr8ii7vffbg2q2y6n2w8fj0x39yis6qcgf9"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.8.2"; sha256="1zrbn45r62nzb1rq8xlksl6dr1zlvy6zg3dgqg7ks9aqv5grd7w4"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; - metavizr = derive2 { name="metavizr"; version="1.20.0"; sha256="0sjz94a46a3frij3vx7dp4xhxn0snhrr219hg53v5ypnfbqyyxin"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.18.0"; sha256="1g7wygaqhn1fsxaijzcil7inby25c1m85ph3xrkjn12m9lhxzzxv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.18.0"; sha256="1d197yf3hfnag6s2pr7vy69vmrh1v8bdxwfylb7v7xsjkhjb1nv7"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.10.0"; sha256="0717pazv7yakj3b0c8p7rzb4iykyiv8vh02c4357qc3kwarkpncj"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; - methylCC = derive2 { name="methylCC"; version="1.10.0"; sha256="0sigx62cy47cmpirr6nqcdik5dxkn79j2xjap36jmipaa2i914s2"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.14.0"; sha256="0lmzipk9mn3m0nv9fmfc5q53w7f1pz37cyj18n501p3p6ljqhz3r"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.20.0"; sha256="0a0rgi396jghxpsq44ybn518r8qkz329kpnpfb0jggwc8ygg56id"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.22.0"; sha256="00asjzv05avfg0rrkmfbdqd6xx8d18zi72n3b1kf9wj81z2d2a35"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.34.0"; sha256="1mxkxs06j8mi44rqnzz52dnarhh1x120qqxwkdlggl8ll36zkhrm"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.30.0"; sha256="15wssa2mp3rx4ccgnmq8bb4b7h0g6vccy2i18vc45v79gq3bn3if"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylSig = derive2 { name="methylSig"; version="1.8.0"; sha256="1qmd2hkinr7d4dd026r3ah0k5hrdpv1zazr8vqvx7rvxmkzz55g5"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.2.1"; sha256="08a4yapgdryz410b8s42f1wiy1zzkk6xmvsqmbmb2gsxsfiv48a7"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; - methylscaper = derive2 { name="methylscaper"; version="1.4.0"; sha256="19vp4hp67qvjxhbkhhhsgxa91hq5p19qsk5rjmksd5xqvgs1g4gw"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.42.0"; sha256="0klkinq55lfj1d4z8gkrv98849079x1l5gd15habw7jq9xxvhjww"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.18.0"; sha256="0xwrwaldj78rmr1zyvz8mw9rxqdp8vr4s9k2776ijx7s71zklh8z"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.44.0"; sha256="1g6chz14q0vpfr6x7pcv3icx3c50lppwcv231j1a3iirz30n8d6w"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.4.0"; sha256="056sy6qk04gaqzcxvxpxskq7wzbgbfa8yclp2r0ry6i9qh7f8imm"; depends=[flexmix ggplot2 SingleCellExperiment]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.20.0"; sha256="0z2rjf95maqalqbdw2v5vhwhj7fjaijp74rmmxfkciwrja25xq57"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.26.0"; sha256="0dhdzmv02vg0wj32bs0rqpax1k1m9vvyn31i95c40nbh245hfjyk"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.24.0"; sha256="10v192wykdgbjbdbg5jc4y8zkyknqi35zx0gb39nby2ss5sh01k8"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.56.0"; sha256="0993zpv9zl31r3x6ifi44syw8w6f6rcwrambvhfy7f22bifz66cl"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.30.0"; sha256="171c1zvc8z2hdzfkdm19w4qbi2pqsis0pjqyca4w1fr3gkrx519n"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.14.0"; sha256="0h13ig1mvciagyifzgi2paag2ypw5kwpjn7k2a1am6fgabywp5b5"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.26.0"; sha256="1vf3q3132bn0qxs047yh7bi3cq5rfirmyhs2f4m05kiwc3ipmc3a"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.18.0"; sha256="089r950x369z3a47jxcankvq0aqv6jkpjqkssfmzg5cp55hxzrhc"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="2.0.0"; sha256="0ri5afvazrq1zq5f8ddma3qx34ifr4bd3858g14rq28fia9khl1s"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; - mia = derive2 { name="mia"; version="1.4.0"; sha256="15pa9q6s9bq0xachfk122p7nz0bad438rfa0zx7zsm99kaygacmk"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaSim = derive2 { name="miaSim"; version="1.2.0"; sha256="0dc6nqmnj4phqqvs04hzcrl4w0w80j7cbmhlzdxp01rszzzr1yzw"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - miaViz = derive2 { name="miaViz"; version="1.4.0"; sha256="1bdbvbh8mkl1gk10zf11b8wqwwr1ybbd6r7dpgh4y35ayscpvdqn"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.54.0"; sha256="1bd38qxcd0lb44wgnns5jsn65b3mvgxfalfz7wpysv6sikmlagx4"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.18.0"; sha256="1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.10.0"; sha256="05lj8ihx8cpx2casxbpyn7n3zwia0bmj0lyn9prqial56s0zmsaj"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.6.1"; sha256="0sccij5f0h6gg3gi3qsirqc3v17qc6wv6rvh601rgn0zhbdf6hl7"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.2.2"; sha256="0bd5a92na9hk2hpmqphpdhn24pk1p2gk5nsbslp8yk5c4161qxmk"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; - midasHLA = derive2 { name="midasHLA"; version="1.4.0"; sha256="1xvqrsp6rkcnr8fnjr9g62krwwshiy3xapxlmbi4bhm6605b0ccy"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.4.0"; sha256="1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.20.0"; sha256="1iy1bghz3wqn80444h9aq81mz1pw7wcx0m6bjj33qxdzcr66jbgl"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.4.0"; sha256="0csvsfld45cqcsnpprviggbb4lsqjsyz00iy02zmzi6kz2djhwil"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.54.0"; sha256="0q6jw2jqkl9qynjpzaygz45c7dmx1l5y2d8s1illpcf87siawcam"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.42.0"; sha256="0255z7w5i5k01w8wn7jkb37h3q7m7vg0szqgk76h330yydnmkrq6"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.26.0"; sha256="1qgz9l4bpkgvahdm2vi0s9amakxw4zhjndc5k8d598vmwa35zjvf"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.4.0"; sha256="10w0y3dflyyaaz8wk2p0pzv62pa2pq28aw0l5q8bvw8as0h6bpy1"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; }; - missMethyl = derive2 { name="missMethyl"; version="1.30.0"; sha256="0ini4a6brxsmd1k73g7q671g0ddrbajz5gcgxk1dbny33fcixyl1"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.16.0"; sha256="17hfm5jvdxb3hlv7hvq7m2a1s4bxzzxv1gakxk9nb26mcw01b29z"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.4.0"; sha256="1b8ndp5wrzy37gspw15s8xv78nk493xwi9wvjav8k4m6cyspgr0q"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr withr]; }; - mitch = derive2 { name="mitch"; version="1.8.0"; sha256="0wxgrfnih9ygpyznlr6c8sgpy8ca6k9a5jcniiwy1c43cxarvx3p"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; - mitoClone2 = derive2 { name="mitoClone2"; version="1.2.0"; sha256="1w5083f5g9dz3lwhfminz4l6yrn7zjysbwlib75n53grkhgwkivz"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.20.0"; sha256="0fwc2w7frj0bjijzfckkxf7ipx1z13gw7907q4zr5qfl9mh127w7"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.12.0"; sha256="04wc6za7vxq2sbspn69lszn6k83s7q0yfgns1052c2jqhfmxgp80"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.4.0"; sha256="0k3k554ncm4j3zkz67dlzdvii9m6k117gryj7lk9wrbsv1a0y7if"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.30.0"; sha256="1yxnkwf6f356nm999b2ng54zb4cdi94pxhpwzj3f3rnr31jawvlp"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monaLisa = derive2 { name="monaLisa"; version="1.2.0"; sha256="0rqqkry54cz7id87znc59d8x49z8cwckmx30nxr6razmyl5bqmx6"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; - monocle = derive2 { name="monocle"; version="2.24.1"; sha256="11g1wx0f1yzhg3x1aa3d5l7pqlzxj16s0gha21skxkgld8k2x8xn"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.34.0"; sha256="196wz422a284akariq5iicknaqqcm50v63b57gsi2pzmv6qfmf5y"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.2.0"; sha256="00l9kykr9n8ys3riw4pjqsdskf8klv9j62v0nr66z66646c1a7vp"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; - motifStack = derive2 { name="motifStack"; version="1.40.0"; sha256="0d2ihx73chczbv6f91n04qb372plrdv7k4qws8shyw1fmvb1rq0z"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.10.2"; sha256="0xmakbas2hhp0lknnfkdh73pm5z2dm4mrzixkx1sf69q7gq2g8gg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.20.0"; sha256="06yy1ngf703ba6m9vs2jk3w1bds1s8hd4nlr3xrxfj3h7gs9dlak"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.18.0"; sha256="1ssn00mxwk23zr5na0vcmxvm69i68f0ga0wqlv1nk2isg0wpv878"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.18.0"; sha256="0hbsaw39k7yryl1bf45kzsnwv479minydvxc6kd0sr9qsvlhn6dc"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.6.0"; sha256="11sqb0sj3g224fnx1kkxy9j4r5ggnp09wm902dlgkgyqj7fywlnv"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; - msPurity = derive2 { name="msPurity"; version="1.22.0"; sha256="0ag1x4smva0zn377s29ff16xpwhcwb7c4yhhl1wx5fvgg9p4kn0i"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.28.0"; sha256="0vlhpv4hh3m2wb8bfr0hn0xfycd6x80zyjf275swx46mssdqwzyp"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.20.0"; sha256="00r3kfimcjy02bb0i8przj45rfkdv3ddaxfjnmi1bb6j5l5sp17b"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.34.0"; sha256="0jnaq9ar4mnf3pfhka9hvk61p51ny9jws49xi8z29dq288b42b42"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.34.0"; sha256="1wzdz0p9wmr243xkmymx9fwskafkyxgmlip4sd1fy2s06px7r0xi"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.4.0"; sha256="0023mippnmmpz0r4f2h5r8g7z3yvhm6vfvkwp9ndsl1r1rpv801w"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.26.0"; sha256="0dkj479id0kz8afmaskgn5dnfg26q47qf7gwm9qq3r9n51hbglsb"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.6.0"; sha256="0nsab0ip3qnic5q15kmv42d4wf0vys5n4d539x0jq1i3mi3zpfbb"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.14.0"; sha256="0mff46n168bxrg8y5dj38p2dfb0mhxf6z55fnmpfc2kahfa5bkk7"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.18.0"; sha256="1wlr21v8brl20cphbvr5vcfy3ilamb7a1sd261i7lkdj4if8bxfx"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.20.0"; sha256="0cbz32ma935ci4aq83dq55ks66v7pz9rpaqfjvkd9gz3c5s88p16"; depends=[doParallel foreach SummarizedExperiment]; }; - multiSight = derive2 { name="multiSight"; version="1.4.0"; sha256="1nkx92kyyimgz2jm4dl2izir0z3qbf9fibgxr5r9j3l3zjwbbd08"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; - multicrispr = derive2 { name="multicrispr"; version="1.6.0"; sha256="0smljmmwlkawbd4hdwgzvl25zynij4ssn4fjdhkgrmszsq79wscy"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.56.0"; sha256="0wxpm0np4721nw2gz4db4a1wdi06pnnziyj0mwkwpsll7mgz337p"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.52.0"; sha256="037wcmwk1wvhjxgmlvnk289pkwishi1753ajkmy9x14xlmldix82"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.4.0"; sha256="1zrbajjfjq8mp6qq10xfrq2m2yrnda37s2aba32dwdk1gpkxx9g4"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.10.1"; sha256="1j3zkhqgza92vdykb1yia1jjwsdqra6q9c0jk6p5p2x0778xqgfd"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.38.0"; sha256="16qfnf02lmfk1cwwql5airkpv7c90lvpyjjrwicid55gqhajfzhx"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.6.0"; sha256="1j3402ywcma83zxbhwlazr0s57c8b11xzg41qfxc6k2dngv3h06z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; - mygene = derive2 { name="mygene"; version="1.32.0"; sha256="0j1cwz95hx2wl6mf6kycrw0xlsi4j6s7y4jjm87dq52dnwnh8svy"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.26.0"; sha256="096zkpmllf58x3pz571h0y2v1klpw82xs6ffgg78hz3kayxbyqr9"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.34.0"; sha256="1q1aqyya9nd494s7m3rdaf3kixipdrwbj825g40kdljwrg85y961"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.30.0"; sha256="1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.12.0"; sha256="13r462fn6mfqknvizfbsim9dic6zw2wznmdhzwfwiax4b1ccjkk0"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; - ncGTW = derive2 { name="ncGTW"; version="1.10.0"; sha256="1xcwh6xd0jhiq40rvswzngddndmvday0c8rni0sq43y9ng901jnd"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.6.0"; sha256="10ajjvhaagvgjcjfjkgviwdrk4962gb35lknwpab9mzdvgkwjb95"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.42.1"; sha256="0759xvkp22dnbhq5wpgvpk8p61w0d50r5jrbh9n7sj8sga4lvvv7"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.18.0"; sha256="0l6bfzkrd8n719fqll4v202dm19hgdn9l8n56l8bykfsa3sff0lj"; depends=[httr igraph jsonlite plyr RCX tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.6.0"; sha256="0gf0gm9aqxxhblhfjab61j0bmyh2lij9bcpk2jvb55gmdaqc1vxg"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.4.0"; sha256="1hl1znxwdhsixv1cxq04nzsj982hjhpd5jc3pl6xdcivr0jbb405"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.8.0"; sha256="0v6760mghq6ynmzfll16gc2q7c4l7gqlxilx6np6aha2qcwgr4cl"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; - netOmics = derive2 { name="netOmics"; version="1.2.0"; sha256="11yjlp1siq80492sywpkwghcsnqmwvmx0rbw9wm58j61qdlywcb5"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; - netSmooth = derive2 { name="netSmooth"; version="1.16.0"; sha256="0jzid8svq21i5kbc3c908dqmf0i4mlsnfa4bq7avp9ynv195nc4q"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netZooR = derive2 { name="netZooR"; version="1.0.0"; sha256="03a1i508hm8i86nnlj1i4hz83fz1krp3qfbiyv2yhrdq3f5ra1yr"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; - netbiov = derive2 { name="netbiov"; version="1.30.0"; sha256="1c63ywyp7zcszrrkyx3q4xnkzij17km675825gcmfgk3h0g96lx7"; depends=[igraph]; }; - netboost = derive2 { name="netboost"; version="2.4.1"; sha256="11rayvp15ysk2fkpsw3w3ivkxfk8dznz6zdrnbmfhv1814mbfvk7"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - netboxr = derive2 { name="netboxr"; version="1.7.1"; sha256="06pc0qw275r1ksj07hvkfvcvxl9dg539wja07j7lbqvnp6hzl0xd"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; - nethet = derive2 { name="nethet"; version="1.28.0"; sha256="1c6is3w1saw5i2akmxf6272qlbxpf40ayfh19jialmmqsdhik01z"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.22.0"; sha256="0wbhcr0qkcsnakfpx49hkjhwbmrc9n76rbs75pc3da4z9wv89qg3"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.56.1"; sha256="0vzvmbb01f4dqy6g9yvwl078zmrnvzgdx12d91k43cw289z3ykvz"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; - networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; - ngsReports = derive2 { name="ngsReports"; version="1.12.4"; sha256="16nc7yl9gaxj7j3dggnd02jn157nndjgxpbvjwa78gxag1lp5fld"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nnNorm = derive2 { name="nnNorm"; version="2.60.0"; sha256="09xr73xpfzj0w9wx23bqzkcnxlvgc50lazbfpd5phl0ravsl5spl"; depends=[marray nnet]; }; - nnSVG = derive2 { name="nnSVG"; version="1.0.4"; sha256="033210n4i52kdm2qv6m3f6pkmb0ll7lwanwn2nz9kzig55mgmn23"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - nondetects = derive2 { name="nondetects"; version="2.26.0"; sha256="1y31pzsihqmlhprdgl9xwspbfj2k9zgp15d905v6y9zjzjdxfdhf"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.24.0"; sha256="03cmxljvcfmzkvsrzhc4si17g68fcb8877pzf6960cvbhv00d4ys"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.22.0"; sha256="1v1x54k8kphq3xrnv5m2ya4viyg22msgviv6hg6qg8fb4hqp9ich"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.32.0"; sha256="05l9dd4w013k9m6yckidal2q2b991nkir78543rzjh81x9kqz229"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.14.0"; sha256="1lx3d1iadhah35hc30wmmki8yxqqw5qs0h0h1wjd6qyg0hyxskq7"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.28.0"; sha256="1878hzdffsz4hsghk9y9m8bdqcy75z5hipj264dawvp89lm57sfg"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.24.0"; sha256="0s81vjca93afz9ysjz16pkdsn7x206lr7mbj9lnrllffhy4n4n59"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.2.0"; sha256="00zx8xq8hz2pz3x6x5lmq78nvrzpzmkjwm364d9qswjvcxdgmcvb"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; - occugene = derive2 { name="occugene"; version="1.56.0"; sha256="1cbi3h0m48vdy1jd5zqmwvrxgc7dn9jxadg1drc3sfbba5y85bsh"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.24.0"; sha256="1j8fv35z3wlc6y5ms34fd0z1r7w9hkr6fzb5rxx2ylc6nfgcsymv"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.60.0"; sha256="0y7j96rafm9b85sxq2483i73685i3j67lk33fn8nfcav6lmsv5vy"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.58.0"; sha256="1m4x50gl1fm5waa531v7ml0q229q65qn9cgiwnvjg721fvra7mdk"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.18.0"; sha256="0gpd1hqniz6m0q1r6ijbr9kj7j9k4lzxqw9r906hlrh3jkwdyw21"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.36.0"; sha256="1l7w3sczsimg640klq8navgdcwjj090wjqd40n4mw76pny2xj2lj"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.16.0"; sha256="0sqh8nympgrig01x4j302xsya10sbrpn75sjwy16srxxiagkrlzk"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.16.0"; sha256="08gv2qzv7a1jsyqqm802w3awymnnyyy84ic56wzhcdimhqgs0an3"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - omicsViewer = derive2 { name="omicsViewer"; version="1.0.1"; sha256="1dndhjwi7n0syp6dq84008df12f628pr0h880qvgfgzfy63g0vnz"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; - ompBAM = derive2 { name="ompBAM"; version="1.0.0"; sha256="0pjkp6vhnnbdflgg15f9cvlx8cdmbd3y09d7i1dk421z28jlwzrs"; depends=[Rcpp zlibbioc]; }; - oncomix = derive2 { name="oncomix"; version="1.18.0"; sha256="0yj0p2vkph8qy1hhfv8nc15ac0z506xazzsmq6a7pvz5yqw7hxqc"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.18.0"; sha256="189zhz5glffh0q368mj8z7q7kvdpx2yl7xvwz5q20ckqj3xyyf10"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.4.0"; sha256="0l2sc6kzwg1y68b4hh8xq075kkb1iz6l5ns417z36hwzb5sl0jxr"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; - ontoProc = derive2 { name="ontoProc"; version="1.18.0"; sha256="01wc7yk44zkylkx1blh7a299696pvf2smya728v3f8axvk8n5hyp"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="2.8.4"; sha256="0fa3hbbrjw458dhmxdjypcjgyxmphp9kdr3r62qqf803i4wsxfk0"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.18.0"; sha256="1lxs08x6xw80rw6q15qda1668yil53pwcwcm1kryibjx78rng3mf"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.18.0"; sha256="1gkqka5i3advring4ajhkad183j27lik605hhnww0fm8n7qmgz7l"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.14.0"; sha256="0fglnzab8p2za8d3d3cpia2rai64jyra1yazkfk718bin6nx2bpg"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.24.0"; sha256="0p5r98v5f969hllm0ywqfi67gaxlgxba506qvlq2rd870bv5bgmk"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.10.0"; sha256="0rwgyq4qx4bgz1rl6z93yiadpslnj8v1aj84pdhjdd7gcn0xyc4g"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.8.0"; sha256="0h6a1cv7gc9pbahn3jpxayxqn9gl9qdygvmppz0za4bmi7jsc03i"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - orthogene = derive2 { name="orthogene"; version="1.2.1"; sha256="1ckzzqglidwb8kmmd93aq2fm8ip95ac3hrf7f8kq27v2z62ykmjk"; depends=[babelgene data_table DelayedArray DelayedMatrixStats dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; - pRoloc = derive2 { name="pRoloc"; version="1.36.0"; sha256="11nznxcw06v9z5l9zlkqqpqzb5iaabvfbww0d0y1blgzhf06mfpz"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.6.0"; sha256="0j48nky1gl1jggpikq60zxcnd4l3ka7l7wwsg0mn3i99ak1x55xh"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.8.0"; sha256="0swvwh8wx871yppzi5mail4hrm8cvfyic4yqnwr32sihipsr9sgq"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.6.0"; sha256="1rp0l035dcqb3vr6rh2q8x9169abcv02g71a6gvbzrs6zipp1183"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.6.0"; sha256="0ad9c6zrfajlkw0d1xhk2b4lggaj37iw92n2lj9qmw9jcdbpqlnq"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.34.0"; sha256="00fqwm8f2aw8lif3hpf7lh68b1gyffi18c97q2y4nh97zf94da0i"; depends=[Rgraphviz]; }; - pairkat = derive2 { name="pairkat"; version="1.2.0"; sha256="05ci3mbbfri30xxhi7ssj1wc35qbl1q5aaybqvfk9s8l14ax0izy"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; - pandaR = derive2 { name="pandaR"; version="1.28.0"; sha256="1l0iz2pyw728vi6smc1gk1sxjczfgdfv805fdc8bby0qapl7v85r"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.18.0"; sha256="1pi6xva3s7avcdayqhh5xyrv00dv2gkv4pwxp3f5k8biz2i5qn0x"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.66.0"; sha256="0bvl3jrsqvf0955mjzqn4nzj3anhhhhn6id57icsmjq15gviajzl"; depends=[affy Biobase]; }; - pareg = derive2 { name="pareg"; version="1.0.0"; sha256="1kzs349cbz81ba1jm7vjqypn1041l5p8qrg9r596b9d902hiqfjg"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; }; - parglms = derive2 { name="parglms"; version="1.28.0"; sha256="0h9bd3rv2cbn8rfv4d1c2ah0pp7bsiziyj7zwslgwa2ycqrarpqa"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.54.0"; sha256="0g974q140byiniixgsq717vz66wrsfwhrv76w0c4by23kvmkyrz7"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.64.0"; sha256="07mad39y9l4c1mb66psi5d9vqd7lwkin3psrszqhl5kd6fi6z3in"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.26.0"; sha256="1q7dryn1h98cfr03xc7bm84rc0xsdhpc1mizd169cyck0jj70siq"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.34.0"; sha256="0aanvd9sgicnbl87wwfr7sdh6bjy6knhcx1x1d5g34pqbzkwfzwq"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.36.1"; sha256="11g4zhy4qfq0gmy588334f7s2w1acs2dz9kimax5ya2b8jjibk71"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.12.0"; sha256="13ny1z0i7zywpk8lk8qpbj2zpgznq3l4q1vyg1r0rc265p8c3031"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.30.0"; sha256="0kzszgk69078kg5v6blnr1bbhhin8rx62s40xx1abm6pm0k87kli"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.22.0"; sha256="0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.88.0"; sha256="1087sl7y707zld7zpf3ly51gnmdp93vn90dwa5440v7qawvg2h9b"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.18.0"; sha256="08w3b8ngbrv7nhc6ybmzwkahk89ixxq67f9zjwinajw3svfi7yw8"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.60.0"; sha256="14lhkhkgslwls86p7y04k0vjg5yqd2js9j4hnvkn89zydv7r29r0"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.10.0"; sha256="0ais6q8vl16x9prf8xsairrhjaaq246zw5n90g2zmh0nnb6674hw"; depends=[bslib doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; - peco = derive2 { name="peco"; version="1.8.0"; sha256="12mq87cyndl7zgwn155vbd8lh3yil9l6slmyjin971hlw53qvikn"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pengls = derive2 { name="pengls"; version="1.2.0"; sha256="0zk8f9yzxc1mnyyv1g2rfjlcc0hz2dgavjrlgfqajzss4m5dilqs"; depends=[BiocParallel glmnet nlme]; }; - pepStat = derive2 { name="pepStat"; version="1.30.0"; sha256="1fj32n61zxm7ls7qk0ncpmm1g2xpf60i0310axniyxlxcbyds0b3"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.30.0"; sha256="11fnm35cbnwy9l09mci9846xcv2mxvknv9hb1bs1i8381q8ysvws"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.6.0"; sha256="0ak5i5pqhjyz99lhbiqxjymsars3pajfwd2snzlyc7xd1fjxg06s"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - pgca = derive2 { name="pgca"; version="1.20.0"; sha256="1mrn054flab2v18za40fhfxn691g3gq93p1ciyxfakbyb89ryi5x"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.16.2"; sha256="0r860hs25higr4crq1jf0s9a8pzrxbswdmz2zyx5bx0p1b78m6si"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.12.0"; sha256="0nn0qgb0rz4j2xsjq0wydjhg5pmf2ra67rm9fdm4m1izmzwa0nhs"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.44.0"; sha256="0dm3h7ax83j3izcij7cdf8wg9cl4409vwnmzfbymf33y2l2z8csx"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenopath = derive2 { name="phenopath"; version="1.20.0"; sha256="114v90my05q89bgyjgl2ix62h3l4xcy96j2fncmpa89l7zax9fr2"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.22.0"; sha256="1mj6mzl74dbpdhc5laiax5h20i0rh9n2rkip7vgwr5qc26a16kcw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.20.0"; sha256="0mcgxwg3igji0a3nwhjby10yy6p1hlh1pfcx973vi7fy3w5inm19"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.40.0"; sha256="0hcyv4ziyaw74mc9vf7bad3q9izi9p0whg3hspbs6w8b3hp34y2k"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.12.1"; sha256="0my7pkd565mkx8b8v008yayh5a0wkp25hwy7fpslygs5ycmr872h"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.68.0"; sha256="1zdiaw0n72sc98qz5fl5xq34s1sqjmp45p2m8m882cv17d81fdgm"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.6.0"; sha256="0m3kp996x248jvcy3d2d8hfw53vzj24k1jkcdw02lcc8p0rcy0zm"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.12.0"; sha256="13xxkk7ja7f7kzn5pxcikdczc5y8f42l4xx3qbw837jxl5sxk2fy"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.62.0"; sha256="1fpdlvivarilkbd5zanqpss1irr3a1y10qqj2k8zmh3rxw6gd99g"; depends=[graph RBGL]; }; - planet = derive2 { name="planet"; version="1.4.0"; sha256="0gqcflfn3l4dia6bi9jbadmhhp1flh3fss8glnlqxwgh4znlgj2x"; depends=[dplyr magrittr tibble]; }; - plethy = derive2 { name="plethy"; version="1.34.0"; sha256="1lj31iizb042zxqr5hma25p0clwc5d034bdbrwcpsfi6gq50ca42"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.68.0"; sha256="07zxflxcay17hxjw3wh5kfdwl2x8537csb18p1qzmyrkvscnja77"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.66.0"; sha256="0zs053ih93klbdwz4gg8m5kizn9ifdccvgm21ddphv9jyn0sic4b"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.14.0"; sha256="1v8yjpavyz6gkm9wpv1ja3ifgdm25x7yw3rsb40py3bfz6wq50pr"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.2.10"; sha256="1azl98gnr6019hzl8c6j3cs7wnq8wicwydxc7wga0882l4jaiv5c"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; - plyranges = derive2 { name="plyranges"; version="1.16.0"; sha256="16af5v9k40sc152bgywkhzxbwx3gyljmn4whx0idfr58q5lafk90"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.28.0"; sha256="1s2b4n91chjsplcmk8zj1sc8fm834vq1rygj10fvap9cnacc53pr"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.8.0"; sha256="12bfbcvsxvlrv4znb7sy5ysmqr3rgpf24axcd5clhbw4xxsasak9"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.28.0"; sha256="1fv0xpir46hfm85lcp3r0wwwf95w3frxn869m41qqqd20l45dbv7"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.16.0"; sha256="1yqz6zayjpgbjfv2b2xy1hrriyjp9p62sgz0m3wzc036ki6hdgj5"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.32.0"; sha256="1l25aggq6yx00rcbqqmpn9w48lj28z1m4s52ngmd2yxvr1kfwz7y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.16.0"; sha256="0wdaxhhsr0zap3mmcfsky5qxka38q86qm3fwdpxq3dprq87i4gyi"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.4.0"; sha256="0m5cw7xjzway21ys1ihyp6s1ni05hxzswhixzig5w375m4qq32zp"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.12.0"; sha256="1mzl1n5vag59m0i30p839dba400pl41kzqk6mqlysysrbhy55mq4"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.12.0"; sha256="1shri7kc33wfliv6bjgcx9xxgblz6kg791r2zpbmj0mc1dwzvqz4"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.36.0"; sha256="0v72wxmv790bbwx5fblp90a3rxqg7g19ryv6xbi23753jd4l6290"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.6.0"; sha256="0zj90y364yfdg6sws32b71n9wdjbw5rhygihcimnwszfhqkfm7hg"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.58.0"; sha256="1sqpp00hhv6gypflrjw8qpqyqgdcp29m86gmi1di1574x8casdkf"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.14.0"; sha256="19m448jiww7z5jf54k625fqljh34nnaxrs9pz2by24kb1iwq9bml"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.6.0"; sha256="1m3rcd6qffd27kdrac5zvriy04p22pky2ldb70069vlhykh979hm"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.30.0"; sha256="06k52jjii9mmy6nyq49f42j8z15snhq58zjj35piyj9vb8x5nl3n"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proBatch = derive2 { name="proBatch"; version="1.11.0"; sha256="1296zlqpkf6pcdxn42sfb8sr8yml7fx97i6iw3ivq98fbgikrad6"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; - proDA = derive2 { name="proDA"; version="1.10.0"; sha256="13an4g1m671if0jvnxvcbvidlaycfyva6bipairjakzvisc3v7df"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - proFIA = derive2 { name="proFIA"; version="1.22.0"; sha256="0cprrdb3mqx9vfqfhx64s0ix22piqy1g2vqjwzxsh5330rg9x4jd"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.24.0"; sha256="1yw59sjljwa4minnlf8w2cbasyf0xyfm3y7r7nw2cl9pkil7q8lh"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.24.0"; sha256="04kvrw09zacvl9cxycw691vhijmhm9whb56iw19jh9w6910bd8g6"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.12.0"; sha256="0i4nrq3n122hz6y6fxnx9crv4k9dk1q75b0f38lclblm897vxhnw"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.18.0"; sha256="1rhy2l2yf9ndxlvff8756s6n8qyi42nz7a75lgygj5aqqckkj21b"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; - projectR = derive2 { name="projectR"; version="1.12.0"; sha256="06xnygqzs4pbdilrm482dxv700bwwy94fkcqgzg1y93bg2pc9jcx"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; - protGear = derive2 { name="protGear"; version="1.0.0"; sha256="19kzjlm7d9yc8zr38cda9c8ijrakiv795av59gvi2h6hkbawh3z1"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.36.0"; sha256="0d229pa4drqpmx8557rc9ic4hck6p0b4kjrvcql97zxbawd42p9l"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.22.1"; sha256="01dgp09219abcvy1kc8hwkpx40rqsyl5g2i5x99c31zsnm4bmhrg"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.28.0"; sha256="1yak827sma4l90k7hvsknkiacbvz3q4rfbxc3v5m5hk0xdwh26fi"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.4.1"; sha256="0pdsb98gf11hh93h9ml546s36vsn9x2vq2fkq3zgyj708prpp7s7"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; }; - puma = derive2 { name="puma"; version="3.38.0"; sha256="0nvyn5j3j5054ifwc9mngf37hq40qdhrhfih195qalpkj6il2b1b"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.44.0"; sha256="0vmfnc5cb1xxbhjaxz8rdvdx2w3dg0i8jnc4i9wa67x6rb3g19ba"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.36.0"; sha256="1356hc5zvfhkn7xgnxs1qm6w0fadb1nqsclgc5mlr15ckf1pr8gr"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.28.0"; sha256="0viy8k7dcx1cgq23mq2779d8hfn4wffq4xi483fjizihs11hr6yy"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - pwrEWAS = derive2 { name="pwrEWAS"; version="1.10.0"; sha256="1xfb9sqz6r21qgdqfs2jzlgky9myzdcqpv4vavh2g33bbnqbkknf"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.14.0"; sha256="18ma0calaywm4jdlr2v1vzhr4xiswqih9r72ggj9h0vvwwc7gfjw"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.12.0"; sha256="1xj882jm4fi7cy8lixzyliaxa617k7wx70bjkzwhd5k9hww28ld1"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.34.0"; sha256="1xr2j7d7k8fi4bfvgzmi100zhln7a7jq0jw0vn0b1jjs5zwlcikc"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qmtools = derive2 { name="qmtools"; version="1.0.0"; sha256="17absfbzih3jam158byykpywlphvzjp3f59dzkjzx7x0wfps4mlz"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.54.0"; sha256="06k1ymzylfsrfbs9cz6m8snrl841fbrrklymfxyrqd20kgfw13xi"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.30.2"; sha256="095d3qbi7852islcr30h5s5pny0ci8k60isbczajnfrf79zgad15"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.50.0"; sha256="0dv6x2g5xkncvzrh37mxlf6hin46qdbj0hrnm83fapw2jb5bfy05"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.22.0"; sha256="0ir752k7is9ns6jxvdsxpjw6byxywl8kakvvfpya763rck014rw0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.12.0"; sha256="0fvmb4dd6hfh0m0zssisd3fgd2j93js45gqklpvldpcm76g0dnw7"; depends=[Hmisc SummarizedExperiment sva]; }; - qsvaR = derive2 { name="qsvaR"; version="1.0.0"; sha256="1gm2n5085jvz615lcd5qdpqlpk1wmrr395hgaixqgzxagwr5v6ll"; depends=[ggplot2 SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.4.1"; sha256="0yvrgqnf3n5fb49sqcmi34hcvzbnkhndd5i9jq5haw23ns9czmva"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.30.0"; sha256="1zfrz7lxyrbf0c8d277npzj1h4six9whkqplvcjmn3li0xj5qng3"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.62.0"; sha256="027am11ilisdn82k0f62dj0csninfxph1bsv5ff71hsjd9wghars"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.30.0"; sha256="0ljch8y7985c0q9mfkl0sxdacwyqflszi34qm8gc9lrjf67p0q21"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.28.0"; sha256="0cvhm5cldcnnxwa293dig1pj9lvj2hnz9zh4gfr25sw0xlcjzmyw"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.42.0"; sha256="1dzckmciyx985zc23im5dp8jrirscdrcwyacsck8w68i37aasrl1"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.36.0"; sha256="05yh4zcqjwra301xala6b3wjx3i8dliifg1kydpy36gxm2qiy5l2"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.26.0"; sha256="1a0dwqcs4mpwqqqxw07vphmvbqwh6989ifd7jkls0jcpn2zxsk9g"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.22.0"; sha256="11zqkxvbha38riah0j25crg9lwmwp9017a37ap95bh65cvxr9870"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.44.1"; sha256="052z9iavnmkaz9jzz7ycpb8z7qqq3s5k6a04icrwl00wff7zqa2q"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.28.0"; sha256="0px72r8mjimf5mxfwb9qz46kqpgjw5gaqq41hy0212ymjd8whaky"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.2.0"; sha256="06fgw2sfnpbnaaa1clj4ahvx19pqkylyka62mdhh34sq9majxisq"; depends=[imager reticulate rGenomeTracksData]; }; - rRDP = derive2 { name="rRDP"; version="1.30.0"; sha256="091picbs0cmvn1a0pmgpxg5j2gxcdj24d1vm1gz6dch8x9sl2ly2"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.8.0"; sha256="063assf7vhf62ygd58bwhixbglhjvjd9qg9vxgzid3yhjdpn2rry"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.12.0"; sha256="08yn4biv5cadby0pvg1zhy14yc9y90z203hm7wv329x217ccm90m"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.34.0"; sha256="17kgipd3nr9l20x5nak24zjfpfslcm8cbj7bhmq8ch9w2ysimpw9"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.34.0"; sha256="1gzw30kcnrnmjx5pn7xr1kgkgwyyjl138nsiqly5xh7h9b1is0sm"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.16.0"; sha256="05nxgjc119yhkckykjzribawjxlg95qy9pb7yq1m7rv2j44izmfk"; depends=[data_table httr RCurl rjson tidyr XML]; }; - rain = derive2 { name="rain"; version="1.30.0"; sha256="1fn62w0d86lc1iilmi11cwqg2sk7fkhg9asdxnglsyiq8hz512ci"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.70.0"; sha256="1l10yq28d3qswcbza9f9jk1vx2cqzqn7r1ixwkvhj87yiqz99rhc"; depends=[]; }; - ramr = derive2 { name="ramr"; version="1.4.0"; sha256="06davx5rkcgms5423aksrcg07y4gg9xsaabhzy6adf7058xbl6dn"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.20.0"; sha256="1an7ppyhnxcg2px9ydc9x623wi8vwbhxdxvvsvlna383j402r1xn"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.42.0"; sha256="1mn1hwdmcvsijf5dvxvgj0pyg12m1ca4b6n0myjk5pva6xykwvhg"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.8.0"; sha256="0s92pvy6vw3jd2brvgnjdh3wacy3m0702qrn6wv5scsrn2b1kwxn"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.4.0"; sha256="0828fmxn0bz0s01fjpripc1jg5jsdnq5l8m4c9bfwx5xnvcgsml4"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.54.0"; sha256="0dvf7nvafap2k5f3ap38zp0m4c12ih1jzg05c2n3l0wivimyp10s"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.18.0"; sha256="0spjill74i15j6l0ckg9yvans07fsxvim5gpq7rfxv2zblfvhaqb"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.6.0"; sha256="02bg0gmxlcg3wj628wda41q58qjb3swqnf67nyyczjv17f4cpd8j"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.8.0"; sha256="0lymq3im87k8qv1f1aga08y45zssnb4f3z3hjzmk1ndzfkqb7ds2"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.8.0"; sha256="0vpx9a9bwwnsgaxazmdggqvw1ap34xj30rshkq0imwfw8s1hagsq"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.22.0"; sha256="1mipj8nrihn7gmxn81l9bxv0rbr9zly7s3vfrbzimvg56iq8wrly"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.6.0"; sha256="0322vplaz77dmvkb7f2ybfgm5bidfq97zrprhvyn28zw2qllr8vg"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.6.1"; sha256="1k582mnq0vdjsz1jyb7h45p6klz9lc35law4x6ydjiv6z0wld55i"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.24.0"; sha256="1qrlhfrg991x0w5p4jlyra6wdvnqljiicckw0iqzybwp5xha8wkp"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.30.0"; sha256="1qqii65xvmj7fgsx45n6szpr0l3z6q2c9s76mx4977wq5rhx8w09"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.28.0"; sha256="11whi2v211xiz9s7cjl14d8vavlry2fmhvx12rma25wkjmhrpa3f"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.22.0"; sha256="0lfgihf3v2ipw13nshwk6nzqv8qajry45zi30qhibpjdi6d3fsjd"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.8.0"; sha256="1r8qxl5md44vvywfvfpkqg5jqb8zkw7hwdh2qpii20jxfd8nf77c"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.18.0"; sha256="09alrj7q373w01vylnymna8hjsgs5gg9ngadglasncnk3yswjg3d"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.18.2"; sha256="07vmprnv5rg42ddq3bwh3d9m488rnfsn82wpkd3l5lx4mlzp81g5"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.34.2"; sha256="1ccicwvsfb0b4cmiykswmrhjzpycbfwvfpwz3n23yq594i7658v7"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.8.0"; sha256="1brzplaw5nrwmayfjdqbwyd6xqq2h8421njpi63w6njjc41j9mhh"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; - rgoslin = derive2 { name="rgoslin"; version="1.0.99"; sha256="01gkgpqz5xb785par8xrx8mf8icbazxcskn9x2ailk5laaxd73sp"; depends=[dplyr Rcpp]; }; - rgsepd = derive2 { name="rgsepd"; version="1.28.0"; sha256="08b11x5qhkq5q17mbr4a2q5r6hz8rrd2xgssclm0flwp2czvnldx"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.40.0"; sha256="00cp90mnb8p83jiflm6x4x0qf4p7gvgh47jk9jry6j3qyvfqaiff"; depends=[rhdf5filters Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.18.0"; sha256="1mxbpnyqhzvxqc34fyd31pai242ivzs0l28z2zssj8ja463fif9f"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.8.0"; sha256="1ipg0v8nqz1imj63scqmpiswcxbl4ankg3knfq4p06ic6ypbbmvs"; depends=[Rhdf5lib]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.30.0"; sha256="1zs3y0icsqrndjp9wwqz3jxysvyc9pch45y49j6g9b5b2l44ma26"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - ribor = derive2 { name="ribor"; version="1.8.0"; sha256="1jwzxcn2civ5g2wcdzi8a10lc0y96b7xpgdb2z3yq4s9sipmbw0j"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.8.0"; sha256="1f57r81g1gvfs84si4mz8r7058ga525hwdf71991z58hiyxbr7xd"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rifi = derive2 { name="rifi"; version="1.0.0"; sha256="15rqmlx3cnl9n8y821v42ganfyazqg85jd757mwrkmvi4xwnbmpw"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; - rmelting = derive2 { name="rmelting"; version="1.12.0"; sha256="1ag2cr4mlb824la0yywjrjkjsnxxmjp5svg2jv4017syl1l5dj2x"; depends=[Rdpack rJava]; }; - rmspc = derive2 { name="rmspc"; version="1.2.0"; sha256="1hj93l3l4maigqd9b4vhsa24x3fjqgqw0d81gm6rjv09pyn4zclh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.6.0"; sha256="1js6a0y5hmkilsq1vgnkjk798z6dnz0acphgfq40p7i6182w1bx8"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.26.0"; sha256="1gpdlv980nid6nsjg1prahdxwp1a8ij00xgzf08ir4ywpvy61ilz"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.32.0"; sha256="0zq1praf5h9294cvmrb06l3chx8v40xw2sfvhlnh1516x9sjkwfc"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.24.4"; sha256="1hgd4zl8r3xxl5jc8yqyxdqsqpvn9dkmkf79ndqzldq8hmgrpdn9"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.28.2"; sha256="07gpx15r8c3wljiwxnff2zp7wxbhzz9r7njk8zg8hpy2q5qm3i6c"; depends=[Biobase MultiAssayExperiment MultiDataSet SummarizedExperiment]; }; - rprimer = derive2 { name="rprimer"; version="1.0.0"; sha256="040fy6zjvjjgz9syczvy8dpv02jnl3pv8vb75n40622z0c2hl1nx"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; - rpx = derive2 { name="rpx"; version="2.4.1"; sha256="169yyyjvr46kis18yxlsznbdb5mdxnlxi6l9nrq5z49wnwx69vav"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.22.0"; sha256="0039sk0dx4d7fqc9yl0grwlv5k18sv08piqyc3fyp66302p38wrj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.42.0"; sha256="108mw7xx04lgkj38k017mw7na1jglsbw0rx1ixb1d7hcgaqjcs63"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.8.0"; sha256="1r90q18nhmzh45djbi1i5x3bcyzbybkp9d5j8i8yqxphs29sr5vx"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.54.0"; sha256="1v11pspkml6xdsacgwxw8r4qdhbnn2h2sqgpm9aidaq9p2085b0v"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.6.0"; sha256="0dw607kxcwv5dig5y3gja5916bpjki3bkphc7jxs79y9sl22zg4p"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.56.1"; sha256="10qy9s6253mgj871qfqn03i8yw10mz7id4cxfyf67qxczz2xmjls"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.18.0"; sha256="04a12w2hnybw5h27b7szd4v4r4p3z359xkrpqpqp9hmvbrx6apa6"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.12.0"; sha256="0q749j2pqhnmlx8d6vak3ig4ggqqwv74sfapfysbfg4n1v6cpkhp"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSNAPPY = derive2 { name="sSNAPPY"; version="1.0.2"; sha256="0in95n2nwqg63i0a8zi8hh0gp3m78qxrf4qp94xnxihiry8h1dam"; depends=[BiocParallel dplyr edgeR ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db plyr purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; }; - sSeq = derive2 { name="sSeq"; version="1.34.0"; sha256="0cc1kz4fqf87xiq00vli8fcp4lix723vsa9ax4g55l5lqxp3k8pv"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.36.0"; sha256="19hxp2zg48dmw1j5jsp2i9n6ccw4613i5bhi5wg6kld4wy8k496v"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.66.0"; sha256="0czbjc83df4xgavkqf4qvypcy0wzlzpdysjmyd189jqinagifzjy"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.20.0"; sha256="1gx76wcln8nxfm4h9klndi7rpzqpcci4h0fxqqhpsd0x19yw6rz2"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.6.1"; sha256="0qp36w1mfwj0kzx055sc3gfyi0b86zahlsjvdiiclpwxh7wizkc4"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.32.0"; sha256="12rh6y38j66l21dlb1199imp4jwkpv19l306lj7qi7prcfwzhmmy"; depends=[Biostrings shiny]; }; - sarks = derive2 { name="sarks"; version="1.8.0"; sha256="1da5vxbf7r2yla1l1m5gcbqbka33c2ry7gwnmjixr6xlv9vs4209"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.4.2"; sha256="1iyym6hakzwd6vcgmkgvgk593ikbjzcwh16r2j9zb2z4bf7y9wwz"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - savR = derive2 { name="savR"; version="1.34.0"; sha256="04zlf3lyr6vnpj80m6fd2is2f7302sxwih8nzzjnc4ss972jid2k"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scAlign = derive2 { name="scAlign"; version="1.9.0"; sha256="0g209c1m06wn66n4zm0gyy1pg41y39d9a14dlpahni7f5zs0zmvd"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; - scAnnotatR = derive2 { name="scAnnotatR"; version="1.2.0"; sha256="067q57kabhqd1z8l3d91fw74aaw89nb48gm6fll4hv00nqza3n5b"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scBFA = derive2 { name="scBFA"; version="1.10.0"; sha256="1w9jy37626ap1lfg7lg672nmbwq8w277mdk7b8xwif4hrjdzkl2f"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scCB2 = derive2 { name="scCB2"; version="1.6.0"; sha256="0mlkm43piaw2krbh7sh7q26lzj0zvwnwhiw37i59va0kp1zg43h5"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.8.0"; sha256="0c4nrgwr7mzb888g27ak0gfz6hvm02n6y0y37z3c7xch71l0lqx0"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.20.0"; sha256="0bjww338z5qf2g97kbh85h9kpagjr59ff9f4alm33h16xz5mb7k0"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.6.0"; sha256="0h7jb0pwff7vq5yarab1c242g1gx21y6h6a8pj7v9yi0i62j3p6n"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.10.0"; sha256="0y14dvdm16b3bvlrnz03adfylm1kj6jrp2fwciyldij2lfal90y0"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.16.0"; sha256="0nnw9di62r68ih25l11755aikgh2p577dnla1yb0q9gdxcvbyxai"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scGPS = derive2 { name="scGPS"; version="1.10.0"; sha256="0z5my7x2yigl024nl0vx1261amf66q7vdgpam2wxqrsvw4f7ylvz"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.8.0"; sha256="05qkq5bg351rpx01q1c1hs7y1zygp6m6r7javia67j8r5w7iir3p"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMAGeCK = derive2 { name="scMAGeCK"; version="1.8.0"; sha256="0qmqn2w16wzgyrbfgh16xaw2kccm6nhdib9nva6w6mg29xa5ifkb"; depends=[ggplot2 Seurat]; }; - scMerge = derive2 { name="scMerge"; version="1.12.0"; sha256="0p55zp02zkdn7g6hdv7ilv7h4ii4988gkd6kf2naq83xs201m2k3"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.10.0"; sha256="1ia5z1qf2jvilamkw3vgxshw14bzl4xk19s1bm9f4p08ghvx6px0"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.18.0"; sha256="13wam3qbp9c8qgsp7hm7jq7q0a1ala6mw2xnp3nfbyz39aiwbix9"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; - scReClassify = derive2 { name="scReClassify"; version="1.2.0"; sha256="1afwxnvn17a5awcggifas7zaiw2r556l9iq1yl4kq06s73c1dfws"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; - scRecover = derive2 { name="scRecover"; version="1.12.0"; sha256="0p3j54ii9assvhpyy8x8zwibv56h7mf4clvahgp0shp0qg4x7zjv"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.6.0"; sha256="0an485i5myfiv2zzwd3ql7ckawid894md3k2603mz2yz6qfsl8yj"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; - scShapes = derive2 { name="scShapes"; version="1.2.0"; sha256="1ammb3a7ddys5zl2maggx3xqvdycy9dn9fl4kffrnqv4abfkvs9c"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; - scTGIF = derive2 { name="scTGIF"; version="1.10.0"; sha256="0vmr6fginvs1zdzzqmvw8yz25s3w58fwb9ifk8rca922af4m72jx"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.8.0"; sha256="1izl8fk4p1ihxb42d4vi5pnxwi2v2j1630sbw70yajxav6i7riav"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.6.0"; sha256="0g3qjxq48aq1kx3b7ma1faxyqvz1qxphvin5byhbird9hn36fljw"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scTreeViz = derive2 { name="scTreeViz"; version="1.2.0"; sha256="005pin0wvq4vws436jqjnpxrgqy0c5pbfg1g3j6mwfpn970frawp"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; - scanMiR = derive2 { name="scanMiR"; version="1.2.0"; sha256="177v72kgzkh2mvbj1sz2c833w51dgknx23h04awi5kh1gxfbhshk"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; - scanMiRApp = derive2 { name="scanMiRApp"; version="1.2.0"; sha256="1m24vq9cq8n912hx6l0q2miwz8ln235j74514lf97jc9srm60scm"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; - scater = derive2 { name="scater"; version="1.24.0"; sha256="0dqirggw7my5nq4ln9q0ya18ciqplkz9gx318ffias9ag3yii5rw"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrepel gridExtra Matrix RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - scatterHatch = derive2 { name="scatterHatch"; version="1.2.0"; sha256="0a35xbd9ziph7h0dc6qc8816frkjqiawxwdyiac80s0r7r8x8mpx"; depends=[ggplot2 plyr spatstat_geom]; }; - sccomp = derive2 { name="sccomp"; version="1.0.0"; sha256="0acch9aa6w5lqkcvjcpzmaii65r1zb0hssndmjbbwn3zhm8ryirc"; depends=[BH boot dplyr forcats ggplot2 ggrepel lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; - scde = derive2 { name="scde"; version="2.24.0"; sha256="074rhfxv80hg4sfl4ksyqz6wz108zwp5bfi602p81i0zfprvkg3g"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.12.0"; sha256="0zmqhsfdx60g1caxbf4vh356wf06v7fgfv7lng5y13vqlf5d875h"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.10.0"; sha256="0kv0sagxkdqj5jd58hj7w7v0swrvnd162wqg31zb32iwxb8y012w"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; - scmap = derive2 { name="scmap"; version="1.18.0"; sha256="0pfwaa9pgml11b84rpf7afdkmg8kxb4srgpc56571vaz388xrv7l"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.16.0"; sha256="15v1f641zdk70l5ss08kgvvq5h7b213f6zc5bg8jakqx2cj99xx9"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.20.0"; sha256="05id34n6min03ha1chg5mrvx399qm2mby9kxkaz5w8fbidp97851"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.18.0"; sha256="10ipfhmp93jjw5ijqiv34vkl79i0wmc9mwwrz2j641qlbkyxziaq"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.6.0"; sha256="09gjq6n7rp4wngfq1yplcrkjrc7yw9w6rg7d2jr6lfj1x74p8syn"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.24.1"; sha256="1a6vlq8i5gh7zxm6igmy75187pkx42z28qjag50m49xy5valw3ni"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.14.0"; sha256="0y5p27ih1v4qz47i83zvwwk1d4qkw6i9hwkfpdma3fw87ffxdy0q"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.8.0"; sha256="16mj21r91jy8ircdz8rfrdli9gjy0hrx90kf6ghs305d3d4dl193"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.6.3"; sha256="1w1jy5fqkp2d03lp84d49fsksnl0pcg0wgqyd49d5k1mipdw4671"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.4.1"; sha256="1rimldsflmaa0ljrhi4am91hvkx6k8xvx5b0q3yl5ndblv2i6rvc"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.30.0"; sha256="16ijs06ccm36z634qyrs3pjcnv0ssdzbvd4r76n55qq0mb10fgcq"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - segmenter = derive2 { name="segmenter"; version="1.2.0"; sha256="1q3dx6j3d85f94ki67lga81d7nk0swy5y8ip3fab186i3amdlwjk"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.8.0"; sha256="00wbbakdd5jggd1wrv7cra1mrzs6r5jg21b760ym056wcmqggn09"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.20.0"; sha256="0676sb39kz3aw70s87snj38kcdc3dhxq4i9wlbmafj4qxrly0l01"; depends=[VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.28.0"; sha256="0258fck970ryg3k5ilp5nhxpr3q6hgj3rgjnbxcmvmyclp3bfn8f"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqArchR = derive2 { name="seqArchR"; version="1.0.0"; sha256="1qivaakafyr080a1r544hfkn109y6ahjpjprkr5qjcb89q5yi0pn"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; - seqCAT = derive2 { name="seqCAT"; version="1.18.0"; sha256="0fjx1rl4jm2jil126iy594la13ai8yf4j2axyxhhs69v5wss2d8s"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.42.0"; sha256="0jkg85ymhz0m7s910x9fp0jxq054j972ljzhvxah9b3y4q4nmxi1"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.62.0"; sha256="1lk3238m17acmd6lgjjbpscyxw8fm63wv34kbbr478wcih1wbwxr"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.28.0"; sha256="0nrrlr1nl9zxmp88qq8jn7wgmda6jh0xvp4nph94w4nwjsyb7xqn"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.30.0"; sha256="0cbikjgg6b5mpr8p8d3mfnyzz917qcvc3bsn3z2c3qq5kllp0qmd"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.44.0"; sha256="085nq6pf0bdn17wsbr5jnyy512v7rf67xff9rp5wz47mcifbv6rg"; depends=[Biostrings GenomicRanges Rhtslib]; }; - seqcombo = derive2 { name="seqcombo"; version="1.18.0"; sha256="1y8pv1zl0vv5ng9nl0rgsgig6k6n6v9jhmax7wgrplz056x1ha8p"; depends=[ggplot2 igraph yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.16.0"; sha256="0yzr1xcyhmziajj8c0v6gxsy5hz01i2ld0m4dvgx51f91gdv4q3p"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.14.2"; sha256="1lpx2w21993i7jzwphf4hwl3d1da9qq6wcn8nr6rglfc23h0cj0i"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.16.0"; sha256="0gv319qrm37yrzvrv9ns0vsar18i0b94mgqbsnkw3122mzrlhfy1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.26.0"; sha256="170msiz4n1n16m3cddnw6jpwvh2j7y6gi6cvbzr4psqabynlvn7x"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.32.0"; sha256="1636y3f9653l5dn4pyrq7kz54vjy2fmg4qrr9pav0215rfilgzyy"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.4.2"; sha256="1pq6kmsq3b965vqc0y2aqniimwpv8i11af22qypcv0mhqk1xlx1m"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.14.0"; sha256="0770hqhq7y1q3mknsfjh0x2rwlmm85wqhi7375bpj612npaqdc7m"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - sigPathway = derive2 { name="sigPathway"; version="1.64.0"; sha256="1c2kwhbxgf66az7ssm2mab9n5x59zy4kxq8vblz5r9636xqaysif"; depends=[]; }; - siggenes = derive2 { name="siggenes"; version="1.70.0"; sha256="0amjqm2c8p1vjzx109p7n81wbsbx8rljwn6mbkl7dpi834im9d7l"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.22.0"; sha256="040qm341bk62pqdl58dninh8mbh7spn8m21vp2nhnmgdqy1v4kqp"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.10.0"; sha256="1kjxbfvbhhxlxg4ms74pz03vmpn39315rw2p0gq2amr94dqv6yd5"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; - signeR = derive2 { name="signeR"; version="1.22.0"; sha256="13jv0f90p462clwncp2ggky0n1xx4vaicak8712dnqzfzch04pzm"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; - sigsquared = derive2 { name="sigsquared"; version="1.28.0"; sha256="13dvbl3s345yqmdxcrk19ql1asspgcc08p9sfyx1n6caamwg90a9"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.28.0"; sha256="14bkmfwwx0x8gz78bzyhfgy5rpvvafxq5z9r8knv4qj6hp1kalsh"; depends=[R6]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.6.1"; sha256="0qblgdxmr7zc981529cca3ykakql618q1im6gaxw8pwws5jgpyk6"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.28.0"; sha256="152hlryc3xhkyp2v7fq20f0d04b2wvr09fl5p8fhiw1r0465vyab"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - single = derive2 { name="single"; version="1.0.0"; sha256="1nx6cglidcmxznmvpkydj1lhgb2wyisl3yqqj0kfzbng2mxv6g0r"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.6.0"; sha256="06hvxxdd8sdx8idgfqpnlxap7mq80asqgl5iq2paa1p6zvjk0w1b"; depends=[ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond generics ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.16.0"; sha256="0jnncpv9bjpp8xlzpx6ks78pil87cg0a3i5ihsp0yrs676dmhhhr"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.4.0"; sha256="162y2xfnv3bpgcmzrr9mhbgns3q1sfpsiif163r3p667iic80ffv"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.12.0"; sha256="0kxg6zpljzqbvz00k2akv3fl5kwf90lldmgjzr429gwcip5ggzdf"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.66.0"; sha256="0f5y2b4zx978js5y3vm77dcc1lvn9lqyjnpi5mdqxcmp6n5sbwgl"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.28.0"; sha256="0b800yjyfdqwzaxrkair1dgd54l5bdw72ppln464fppqq3lmr9l3"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.18.0"; sha256="04yy7h4d9jm44alg4w0yzslk4h8qrlz1ij9d5i40hlbra79nsy69"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.4.0"; sha256="0xapi66l5z2qdqns3fcjqcjal6npqj7rxra60lwjvbrq49pq69p2"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - snapCGH = derive2 { name="snapCGH"; version="1.66.0"; sha256="03mz36ghpj4fvl9klhjgkqnxds6ickva2azq3hnxmb7jnak3rnlq"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.8.0"; sha256="0dh7havwzl1fhypf5aygi56agf6hqps714viq9rjzk4bd9shmcna"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.6.0"; sha256="09hp1lchzhm8iilc34lnyaxr5002zcg3ihcfv4fv07vc5i52ydmw"; depends=[assertthat basilisk irlba reticulate]; }; - snm = derive2 { name="snm"; version="1.44.0"; sha256="08vpzp7xr2w2qg1zcxqqj4wayik661cv2s5niivb7r82jxf6rm6i"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.46.0"; sha256="0a5b5nqc7n965jk45ijwkzbn416ib4gfhp8xl39z8f2bdskip4a2"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.28.0"; sha256="0hdqikcisva4blak5znwwv4xxvxxkg5n3jx0q4mhbqk7sp28p8vp"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sojourner = derive2 { name="sojourner"; version="1.10.0"; sha256="19gg70hjydxqj46ll6hanl3yvcpc9kmy65i1hh1w6yqph05xralb"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; }; - sparrow = derive2 { name="sparrow"; version="1.2.0"; sha256="0asmqfadqjc99dvrcdsz6jcvqkkqd5d3cf822jpf93ywk75a7gww"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.20.0"; sha256="16wgj99i05s4gvv8i7k8ycdmyjs2bp6n61ahab0x10qhw823yy4s"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.8.0"; sha256="0p12kay7p5zbfm2589wdx0n9jhgpf5fb2fsmkhn3p4ck4xcy13x2"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.14.0"; sha256="0818i5hk62gynb3f5slrw5b86n9gj14p9kabk1lhmdhqpbynpar5"; depends=[glmnet huge MASS Matrix]; }; - spatialDE = derive2 { name="spatialDE"; version="1.2.0"; sha256="1hbs8z8hfgmnj4zzjppg5zpkv6i4baaqargiwf8gqdv1abzi3dbn"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.2.0"; sha256="1jl9p53k7sxjg4nn5qkfcsf0p1warg26j488x5nkpnqhng59pg0q"; depends=[av BiocFileCache BiocParallel data_table DESeq2 distinct dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph limma magick Matrix plotly pROC rappdirs reshape2 rols rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment UpSetR visNetwork WGCNA xml2 yaml]; }; - spatzie = derive2 { name="spatzie"; version="1.2.0"; sha256="0zgy1m4ljsr51mdd8bqv64gx08yqk9r3cgbszyq4k0sjk136xg2m"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; - specL = derive2 { name="specL"; version="1.30.0"; sha256="0xrjbwsjc02amgmmsj5s63fdlimf4726d9s22jmm243b6s16nbh6"; depends=[DBI protViz RSQLite seqinr]; }; - spicyR = derive2 { name="spicyR"; version="1.8.0"; sha256="1znndd64nz9jgw2paj5qb9wr7zrdl905q7kz0g159syl8lzlixg7"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam spatstat_core spatstat_geom tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.56.0"; sha256="1sjy783ab394x3f3wqsh1slcq6i2xdns25w1pkp7hvjwsrmmq8f4"; depends=[]; }; - spiky = derive2 { name="spiky"; version="1.2.0"; sha256="0nfazdrlzgh1p3rsfmaibkyag5h0mmbbmnhaqg6nxnv92yddqfyr"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; - spkTools = derive2 { name="spkTools"; version="1.52.0"; sha256="006v158b9397r1w64ah7rqxdzj4sxha5cb82rdcxssbwkz7zmghl"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.20.0"; sha256="1bh5w1jsxaizs0n9f9pv2s84l6j4k3fgdbyxwvzzva602kwhxbqf"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.24.0"; sha256="1b0mlfmy237s4pw8ycf4z9qjq41kk1ayky6ga211bik35x0k6yzs"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.62.0"; sha256="08mrk44v90zs7hj7k809d6ay88rj7cpx3ijmnshp7fmf998l3pfm"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.8.0"; sha256="02dd1irl15nb9ydwsjbdx1n01xiav0aylnmyipv1rjajciyg0xsq"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - srnadiff = derive2 { name="srnadiff"; version="1.16.0"; sha256="1g2g6y2mlqq7p79q5xm11i963gjxbzzxvggz5lzpl55kaz8bxxlr"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.10.0"; sha256="0zf9mpjsrcvp4mj41dz9r8q0r94b5rsgm9f17qv2pyl7a33daivv"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.68.0"; sha256="10zvpqjg19l1jwcvbz5bc2gm0gr25apnzl19y7d886bkd9xc68wl"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.26.0"; sha256="1dd1kf6h062d2billx632ykbjyzygsmjlkvy7cfqq690bi54kqpj"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.70.0"; sha256="08bdw9x6dj52fv3jhp27pkbpri81mpn8rggawb5lp1si4fwaxzgk"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.12.0"; sha256="0l9rhi66knb9d9v93qbxf9vwz9wpz82vlfs39i5bwd3mprlzp6kx"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.30.0"; sha256="0hnbcxn4m1q2yffi3xrxk4mbjxjn5axl5p8ffli145jjr00n0mq5"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.38.0"; sha256="0jbyg1b2gc9snnqnybapqmp5mwyhh9b3l4dswfxbx3jdl514wamr"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.18.0"; sha256="0ns3ih6l4na6irshrc5iy4d9qf7hrnqq3ndnlcjb2i1cn38l2w9y"; depends=[SummarizedExperiment]; }; - standR = derive2 { name="standR"; version="1.0.0"; sha256="0cqsvnm4ffg0gq5qlx81hmhz8cjpsc451jmwlvfzrhhxy3i9d1v5"; depends=[Biobase BiocGenerics dplyr edgeR ggplot2 limma mclustcomp patchwork readr rlang ruv S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; - statTarget = derive2 { name="statTarget"; version="1.26.0"; sha256="0k182sp8vzrwn3zxxqyi11bq0ca90w5ly0pdc03kflgr4z186fs8"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.68.0"; sha256="1czlhb9cqhacl4g87ydgsb8i9ilcxr9gb64kx7vxk49dv6ffyszi"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.14.0"; sha256="15r5ng9z9zyijm7w562dml56lxjvj290cxbjm8r59dvb7g9br07b"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.8.0"; sha256="03cd2v72m0p0k99qhvpsbhvdlvx608a7765h6zcawbys35h7k020"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.8.0"; sha256="015iabqbjy4zar42dnrnj3602y89rc0ln2y3chrwfk3bd00317dj"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.26.0"; sha256="1fwnjw0bqjqwb39i4cy34ipa6nw6jmk01d4la7r3fmf57xz73sp7"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.4.0"; sha256="0llhk099ql7xv5wcb710pgz6r5ljiac5g9bjwwvzvg3rnjnsq9im"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.34.0"; sha256="1677sffcndrymh8dlahl7qh35zs9k5h0h4x040a7lal1iaqzgxdi"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - surfaltr = derive2 { name="surfaltr"; version="1.2.2"; sha256="1dx8nfvyknqahszg94064mkvb45b79biibagqz6w24lmymdvxv0v"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; - survcomp = derive2 { name="survcomp"; version="1.46.0"; sha256="1b39s6v0awmznfs2gkklps1x3pnk0b4420vhrhgfv5lakz89f1zi"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.12.0"; sha256="0ihq2js9j2wkbqpgvpk8mzd0rrjvwmmdph84nhm20z04mfbsl4k5"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.44.0"; sha256="0ka259rn0la0hjslj7w24q1dyyh79h84nw6mxp7armqbfjb207a4"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - svaNUMT = derive2 { name="svaNUMT"; version="1.2.0"; sha256="13kk77bqsm8pk8kwjk8ag4mg7f8fqgpypwkdv5zhqds51zb14pkm"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - svaRetro = derive2 { name="svaRetro"; version="1.2.0"; sha256="15q7k9rjds0qzyighfp1bn6j8jr36h9wckvb1sfg0zk3lhzr04sz"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - swfdr = derive2 { name="swfdr"; version="1.22.0"; sha256="1gkam38fcn0i5vrkngapf2wbbixbr059xi1xl04iwnllz1xg0sny"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.32.0"; sha256="0fyysinxa14fx2lwmpishyva7jn4m4k9cipxmbhinf2v5z5h3qj5"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.22.0"; sha256="0mgif3d6pkhivk8yrjdp4xm6kad5vm9g18mvn617zd71zfqd902y"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapsis = derive2 { name="synapsis"; version="1.2.0"; sha256="1m8js52l8spp3w40pypbha1ydgbjz0ypylk08gjxclw3jp9abwjy"; depends=[EBImage]; }; - synapter = derive2 { name="synapter"; version="2.20.1"; sha256="193j8r44msr0hhb9hvpk5yl0i2ns1lpzbfb585jfiji6w37lskrp"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.4.5"; sha256="01m56wbb9qlyv4fj939h68g31vm0c1rfj0xammc5g2lwwwnnascz"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="1.26.0"; sha256="0zygs6gskgddb68as4yh3bw1kjlsxk60rym1f6yxj5vzln0ka53c"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.2.2"; sha256="1yybbff29gwv6rm0nw4yjw73bbl5prfj8gj4zky917smjfd459im"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.6.1"; sha256="1b0x9vy7mkppf20c0i5p65wjicz12njx7in9w4vjqggvixbc9cjn"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.4.0"; sha256="0zandgmzwj5b3hk8w60rmmc40hkpsvg9vynpix50hi81s8vwj26j"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.4.0"; sha256="03ap5c7pznmflnlx7q9bwl8d64x68vz849ld6lxhm7j6wsva2c9m"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.14.0"; sha256="140lpja0brw898is5xazxdz1h1agfzwwx9w63fhxacyx1ll43h41"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.14.0"; sha256="1c3jmx3ddr7yiijpv08lzgk52r49g2ir4xayf65fzqb90ni6k04q"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.16.0"; sha256="1zfk4a4qm76ah2z0bmkl0h0xpbqfjlkgmiy478gi7xvnd5rm0gwy"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.34.0"; sha256="0pv11lrg0fsfpv933k7zjlqswb5zqqxx12cwrfkz91v3x3ivsbza"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - tanggle = derive2 { name="tanggle"; version="1.2.0"; sha256="1r04qmxq9ww0ly4mzpkxqv7xyva3mqy02lh3vw13v4dp9d9zaf7c"; depends=[ape ggplot2 ggtree phangorn]; }; - target = derive2 { name="target"; version="1.10.0"; sha256="00dwbwzv6y9nfs1cc2jv39b0fcjcbzwfnqmv3zicwfq1lsa4z9mv"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.18.1"; sha256="0abybqmmn5ah189c38j7l1msm985vdzk42a1cw0pkskvan62hw50"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.40.0"; sha256="02r53h6224f8jwwvnv1n09s8i8akhq2qf562crq14m8qk5xw4scf"; depends=[BiocParallel igraph]; }; - terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.0.0"; sha256="16sc6n1cgrxr425024k37vzy1n2pij8n7lzxq383r73wyp5z3zkc"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.6.3"; sha256="1b90n9sirpff8dh8kh8m2p4lnpfpqfh0zwvhpk5ymnw7j7x1vw7n"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.6.1"; sha256="0y30479w9nim6yap55fcg99qi4599rnliacqaiq693qwnrglksmg"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; - tidybulk = derive2 { name="tidybulk"; version="1.8.2"; sha256="0ma28j78hcmhwzz6fcc9gp0rpwd1j2wf5nwhnc1xq66sm0wn299g"; depends=[dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tigre = derive2 { name="tigre"; version="1.50.0"; sha256="0a4nn8q6iz20xfpwjvdp387cc3w0wdd9rpn6p8gh3dkqh8wsnggd"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.74.0"; sha256="17n30c0nybsqvmm920zfxfx82yz0afnv1p14jcrnhf3qi9ipdjna"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.7.1"; sha256="0s3h8rk7k2s6fnac3v5m8hc2mmdnb4dvbld6ad1as9ac0nvz3521"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.68.0"; sha256="10gin2dmg955ksg5s81kahracf889vdzjkj1f5nk59bpdyps2ga0"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.20.0"; sha256="0w7jbk49647hzx1ny8xa8mf5q8nyfdn92xmw4k4lm8d7w1xbjx75"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.74.0"; sha256="0b7ic4sz8d93b4cp4idhcywc9j9y8dvamz5y4mm9p0xhn404s4k0"; depends=[DynDoc widgetTools]; }; - tomoda = derive2 { name="tomoda"; version="1.6.0"; sha256="032h10674vyp017jww0rfpgs8jn7kl5m9w36j3azzvjh5p04n9s7"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - tomoseqr = derive2 { name="tomoseqr"; version="1.0.0"; sha256="0afxzfqllr1l8mhkv75wismhsb1ipsspws18x3gyx2cvwi3yz5mw"; depends=[animation BiocFileCache dplyr purrr readr shiny stringr tibble]; }; - topGO = derive2 { name="topGO"; version="2.48.0"; sha256="125r42ymk1irjmwk4sywjkcshs71s26p3zsvryfdvf56k5w162v6"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.12.0"; sha256="0v1cq7gvbwdqxczmy5vrw8yqk7h1bvx3rils4pkv7w9nhqps5g4k"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.18.0"; sha256="1qrjgbs2lh851d22bcl75574jnyc554aqqxb34zdnpvpwavaqaya"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.32.1"; sha256="0hifh15z5d83qmrvh3kpi8i18dfqqfj6kn4kqkkcyxbfm1yx62h1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.30.0"; sha256="0xv4n8avwls10dk2kn2mhjq69cfqkackdn1jdz85xq5z42qnkl10"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.10.0"; sha256="0v9nqxrwa69qhmyaicn2vvs8haha4kzs93iqim306331vadp9qm0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.24.0"; sha256="1zc6aasd5nzwl9jxr0rdriiq85adqdbfi5b9m3jyf69pa71sgy03"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.18.0"; sha256="1zwyiabw3iagbp95q16pzwdx1i8w77ibqi5wawn1j046q9qi20fh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transformGamPoi = derive2 { name="transformGamPoi"; version="1.2.0"; sha256="0nc2524yfq44zlfiv8nawaj83i04kpmrmr18jg81gjcya6n0xayq"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.14.0"; sha256="0h6d9akl1amz0b0k6f39pfg8szd7z85lxicw2bzy74pfmcdig3an"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.6.1"; sha256="15a75mzbdzd8fm65mp7qpzwhgl0hy1r9ny02m97c4cm7qq0rl2hm"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; - traseR = derive2 { name="traseR"; version="1.26.0"; sha256="1saas8qiiir4hafshs8i8pbpj3rfnsngrfg9a4ryalnwnbqyh519"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - traviz = derive2 { name="traviz"; version="1.2.0"; sha256="1y2gckk7nm1yb8qv1llkal3mzmdk11kgmdagflymhla4nx2gdgay"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.20.2"; sha256="1jymbyl82n88ckw0nkbj72rvlxbk5m7xmcmq3fyi885z7aasc0x1"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.4.0"; sha256="0sd1vk1hzvma0644p8wz4037gmm5wpf1d8n22fa0d5m7c97qijrl"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; - trena = derive2 { name="trena"; version="1.18.1"; sha256="1d8rf8403by7bfqckhv25qz8bhx4ph0hq48w17d255awb1i8z6ly"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.4.0"; sha256="0bjkajcz6xcfak6071d0ihakrvgf7s0pmkn6vqkjd6yxbfld7zln"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.42.0"; sha256="09gbchwpifx5dkmw3irshb63jl22fn2sxsj450krqjjq1gjq1xhx"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.34.0"; sha256="1d6gwzx99np8yrsmqnn23s94ib6k41290sv2h4nmzblsidsimlbs"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.36.0"; sha256="07yfm0vvrvw21hvdrprsw8crjb07hvz36w83avrqq16v3l64xgq8"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tripr = derive2 { name="tripr"; version="1.2.0"; sha256="0v5yqzh20ha7zbl3d8xl04gw3qq9mfpnggk4aw3k8ckqasii10q7"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; - tscR = derive2 { name="tscR"; version="1.8.0"; sha256="0i8d739xd39bvj05bx4x98nhpdl1mjsdsci1vdw6ri2kh7hrihji"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; - tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; }; - ttgsea = derive2 { name="ttgsea"; version="1.4.0"; sha256="15kzy6ah7yz1ldx79g3z3n2ipfc842hg1l72ijcrsni47l6gs8ss"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.42.0"; sha256="152alh46baz6kjfqsawyh74if4jnyqq4axxw7ihj4b4c79r5bq9g"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.72.0"; sha256="1s0xv8kh5mfwa9z3f5096bq99g8ncnygcih7xb0fpvj6knpp0w5k"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.20.0"; sha256="0gjsbn47a8rid73krlip1nczhwnfi85a7023pchc9j98y85lv8w9"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - txcutr = derive2 { name="txcutr"; version="1.2.0"; sha256="016y2g0n1394n3ynfxszxsnh9874r1f1jy4yh9c48c3ivkp36nk1"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.14.1"; sha256="0hxq5lkrdiz0a3xpl88adrv4m55jr6g46a5m9pamc0w4bxddirr8"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.24.0"; sha256="1cnra82pvwz79a1hkw0phc6aa3v43r5p4nx8xyx5wzmkd7rjkc8x"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.22.0"; sha256="1fq9zqa0kgdzvc0bhr60kqkl27b5y525czfm0w7qmbv3a832mhhd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.6.0"; sha256="0r0vgi7pq93vpw7mcqw96ixfgkhwllw16v20jsk3v27jx5gvr31c"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.32.0"; sha256="1skfs94a6bv05c844zf5vfqw1fbgxyppgdnckdbhxg2a2470a4wh"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.14.1"; sha256="1sm54z8aq3534qjsa19wychhwcvwnjlkydmiqqvidiiwcxwqpjsr"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; - updateObject = derive2 { name="updateObject"; version="1.0.0"; sha256="0ng927m9hrmwlnx02pm35b5173a0wx1b2k54gww9xc1pz9b5zp24"; depends=[BiocGenerics digest S4Vectors]; }; - variancePartition = derive2 { name="variancePartition"; version="1.26.0"; sha256="0wk1xql8b0gxyrqz9hs54xvmp7qdw9b8jnv88p4vgv061iwyk7wv"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack reshape2 RhpcBLASctl rlang scales]; }; - vbmp = derive2 { name="vbmp"; version="1.64.0"; sha256="02xxvam2dmhhqvm30gxh2v16894qbqha1mc7bl78gq5sc067yr0n"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.6.0"; sha256="07hbrjqwlxpjrznd9jbv3psqgrsadpa626acgzc02wkl9vfgg5bc"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - veloviz = derive2 { name="veloviz"; version="1.2.1"; sha256="0k84ghg5c0qlkmd1ck3k1gly8gyd7l1qysm2jmw60nf1b8w8lxxz"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; - vidger = derive2 { name="vidger"; version="1.16.0"; sha256="0kn06i2kb6drq4g5y1xx8wrw4fp5q9147d5mnfj0jvi5db7cmsav"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.30.0"; sha256="0ii6fg0bzgnwfrhlvkh34c17xg2wpyqvb1hg1qsh7prv8dij4q0x"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.4.0"; sha256="01gw1cjm9nz804hw64vsk2jicb86p0dl1qrgkadnixxzcksgb3gz"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; - vsn = derive2 { name="vsn"; version="3.64.0"; sha256="1ja7vdjvgx671l57f9fzfn4vc6q7xzfmqs4krg2rdyfaaf531gqf"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.36.0"; sha256="10sr9rpq5bb1a76wa4r80w01cm5wmijc83f0aq2idbw8qbvxn39c"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.18.0"; sha256="0f9gmypm1n3g0a7k76kkzyxa3pm3jsqyb75d1xf148gr1n0qqf2w"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.10.0"; sha256="15sg5912vvl3bhw1cfrk22r5azisp18dawipybj78rgzbqvrzga3"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="2.2.0"; sha256="0adqyfabrvfcaj3mwp0rbqlcgpj92yb205cyhibbrs5gdr5ri4pv"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.30.0"; sha256="04di095i9i19j9ppx8gdsk7n18vd02d4rjdi9d4a3p0xv05ihnb6"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.62.0"; sha256="10d3pnrs26xmk2dpnfvkd5ngl9l5xcfcsch4za8jkissfs3w9y24"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.68.0"; sha256="1g3srxsa2fqcn3r4wz4y19fwjmw3vawlcvdw6lbjdnvbgcafq1ah"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.8.0"; sha256="0xkmh3k174jywrvaqanbbw4xinymx1fgds1n4i2qnv6bkdpcjfi1"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.74.0"; sha256="10w1s5h4za6ibmphvj145ir3lp22qgah2z8fvmipmf8ciq1jf86d"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.20.0"; sha256="0s128mm5w8n072k6j0fv1mxnxjpwisjp5lpz8a9z96cnn69bnr0i"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.6.0"; sha256="12b3sf1xzxynv7c7r24rgzfzgznw3s00rwyg26f9c2agk8pz1cjq"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.4.0"; sha256="1008s39bb7sd261cy1vfgdah7bmhfw9qq322fh7g4wvpfw63ii9f"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.18.0"; sha256="0p2zd2728lj5q8y24gdfvsjijd6zl2i73hrcf017n32jq7vn71xm"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; - xcore = derive2 { name="xcore"; version="1.0.0"; sha256="1czys3nbw1hzy0p6bblqa6qvp68xd7iifi2isw9dhsn2k4nkr0xf"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.54.0"; sha256="1n3nxc4jwxf5z32i70sza52nyk29adhp8vc3hac7r5b8mbi6gg10"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.22.0"; sha256="1lcfxw73cxvpy3bnq28pxdy5128mpq5xklsa0mzxdjyqc4g55hy8"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.22.0"; sha256="0z5202pqq02fwm8qf1g36004k7sv668s1xacbpr1cvw5sl452lbg"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.18.0"; sha256="1h7g553rgb5mkmmsp8dyqqs9n9x17xmmcg3iijhb54nyrr2j1mji"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.6.5"; sha256="0rxpjkisjj1xjchjjm72k8za5hn48wbdahmbllljvxm5ii6k36k6"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zinbwave = derive2 { name="zinbwave"; version="1.18.0"; sha256="0vpz721sciw5b4ypxj5lj8p53gwkpfwlwkn6k3y8i65zg80p1g6i"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.42.0"; sha256="0w0y9jixdk6akmasn55g9g0nhlh93hbca5bwx5w1fypnvqrqpxzv"; depends=[]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.52.0"; sha256="1ypd0wg3k2zzl0zf15c16dc38hfpsm5vv4x0x0yf90x0f8b6jpaz"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.66.0"; sha256="02rjxzbrzphl28z8zpgw3gavzlzlx71n5ld8sb3im6xpn81ykvfh"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.16.0"; sha256="12gmdkzm9wnrq793xqvw3mzwmmsm1vkh36llapr7m7q4dmcfgxr0"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.54.0"; sha256="0prcaxqmzm4hhpv228xh0glhm166gs17sa9h4lqrm03pwrjrdqdw"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.14.0"; sha256="1s1mzjxqld8gllfh6z9kg30klb4y1jrkrif7vwr18c0mhamf47a6"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.14.0"; sha256="1ks799kgdmlxn5iyj6rzj04cm28klivclz3bg6bc4wad2q7h4ra9"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.8.0"; sha256="0wrprxd91vi4wwh9wixhx1ppbjsb56r4kcxgqz8w6ahr3z2387im"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.38.0"; sha256="0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.46.0"; sha256="0yvdx32yr4mv7dl5ycpbxhrkm6csrr7k3398ggjavdcfhz54dgr8"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.30.0"; sha256="1civ4a14ynccv6xs27fm95fw6254l1z0q37546ivyv2mhbz0d2i1"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.30.0"; sha256="0585s5pb8zr9il1vhxw9vjzzajmdcjmf9zz3zlc5vpczd3fnzfkf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.13.0"; sha256="18w65sf3h4yzw9v5xgkalxnkmgzgsx100v7qc7z4ifx10lgpji5n"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.24.0"; sha256="0zzl5dv64yhdivsm2pgsfjikygib9pkfiv34h1lnmqrj6yivvvw8"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="2.0.1"; sha256="1bwzvi6j3s66dcll1lb4xy25j4nfn1ln6mc3flh0wgy13l26x8m6"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + ANF = derive2 { name="ANF"; version="1.20.0"; sha256="0yfwvgx7144r894fr13sx4gyyq6ljh7y734wx74sb7q80cl2gs1j"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.12.0"; sha256="1iaz9ircfh5x3z5pibn5vnd4lbbr7m5ypk97xnizn22z41aqrxn3"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + APL = derive2 { name="APL"; version="1.2.0"; sha256="1i02m70aa67m1h81q9lz3qmc52sc6cjicgxd9krqm9r6fpgcf22g"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.38.0"; sha256="14mffjsy7cwpa2xf8zdqwdk6mnfj3lf06y8s59ndh531b45nw5wc"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.24.0"; sha256="1q4i33rw1qb8bnvkl06izl4nyl9lzgwy8rwrmvbrz1c384pmy8yj"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.42.0"; sha256="1kr6l2ma7wzy8i9dn86zx927yvx1l4bnkxhv97ra3sh5vr6m8ywa"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.32.0"; sha256="12wap8xbq6xl7p430yd9yy5kdhs15n7nmv2h3k9bsi0f4m6md02i"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.14.0"; sha256="0c2b3gdza58vqhharhw8967p2w2knnrm5s2svvnnjbf67qbg45b7"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.16.0"; sha256="13zwnjap4y0s3qqv10mv2i4mqan9nmkm2l29i448h1j3wwfq18j2"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.34.0"; sha256="0y1j9j9g8mlrrxz8ggi45lb9gvdsmcq94c0pzj8y8lm7hmsmixwg"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASURAT = derive2 { name="ASURAT"; version="1.2.0"; sha256="1n5wvdyf80c0yhw8mxzkawxk0bkvy3qysxb9vgw1pj75nrp7ml7i"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.8.0"; sha256="0gwp5ijpxjy6hd1090cmwbfrfac1qqrzxc06n1j89c0va7wm9l4k"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; + ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.0.0"; sha256="1n389l4b17j6q36irpd3gbdn5hlfk47315rx30jmsiwyid17qm4j"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.22.0"; sha256="12ggi2dzf8qyzjrxprvk099f61yrabg2d84iqnjxzrn77v6z19b2"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.0.1"; sha256="0p7cs8a6ywh4k80q3hjbh8gd3599209li8igzkilaa4z7gvhj0fi"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + AUCell = derive2 { name="AUCell"; version="1.20.2"; sha256="1qb13qd5xzgrpx6jlg3ll0ff5spz3y06ji31vvqzm759almg2w3s"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.12.0"; sha256="1psbxxrwb6mk2jwjw963vwdczb3i5590rcm7hk43kpiw45i1q1j9"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.16.0"; sha256="1jsdl477qhsq3rpqvgdm7navr4izpppfkiw0fvlhxwspgp3fjs6c"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.58.0"; sha256="1bg7iqasvfsgd9x3ykgpblqnz1q06g3ifmzj4jf2kn8kxj63wfbl"; depends=[Biostrings RCurl XML]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.44.0"; sha256="1n6x2c0h6xmcll7mxq4n1y8ahqfmba8ppdcrjk9hf3nh5wngprkz"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.48.0"; sha256="0q3hynyd4dhhh1a2b27y3rrshgvxfwv17k7yabh6g4pc12c33mf7"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.36.0"; sha256="0zn8pp4pl5wr957mf6agjpn61f9qpnjx0nbxb5wnbr40672x0263"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.12.0"; sha256="000apg879li9wkbyrl8cm73z6h0xasqp41h9ir9hywy2v38rmc5b"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="4.0.2"; sha256="1y4qqc6l8flv5ns4qwzjwmcykm6zcm4jg097mn8xyp7mnxymy7pl"; depends=[baseline BiocParallel dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; + AnVIL = derive2 { name="AnVIL"; version="1.10.1"; sha256="0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.8.0"; sha256="13qcp2s012ai44dkddk71ga44y87jnl0vljyd93lj1dlh8nw7c00"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.8.0"; sha256="1i5zf7pyrzi6v13gpscmdb5qdb5gknicc8fk9s9nmsl1wpj6wlsw"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; + Anaquin = derive2 { name="Anaquin"; version="2.22.0"; sha256="08y2syaacy15rxcf3x2r3906kfm58fkx7ainaqvy5inlc9f670j5"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.26.0"; sha256="154cg63n7h9h5jkj00aqf0hzbmmjg16bzvvk50fyixwq0a4q1j00"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.60.0"; sha256="1srv0jizmwgmsmgb9cfgy5nbgd3jsgxgzzax6wfsahckb5zihrqp"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.22.0"; sha256="0m16kfssxbblf03ykawkmqa038cl90prhb23k6y88g2hwm00wynk"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.40.0"; sha256="15shh8rmcx69g3zd256720vh0c3qbly5zrvwm463dws41cjla48x"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.6.0"; sha256="1hk02q6mwx49khbhydndfa1qry8ylhmwz2dff8845a510hm0di7n"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.28.0"; sha256="0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.57.0"; sha256="1fzi951mjc4kbkkvlfvwlfrpfnjckkmw4xz4m5dapy1z2jkgp8w6"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.47.0"; sha256="0fndc7xifzj2wq8si8q8zjjkly5ckgr28jrm3m887s7kivbvjzvv"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + AssessORF = derive2 { name="AssessORF"; version="1.16.0"; sha256="125qkjsjyxp6zk3nzfamakyfgm7wd7w9vv1vn7xyyylpqpa8rpml"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.36.0"; sha256="1hkvmfik4m2yw5xg4k2g551l27i64blbsdvp1kmvvyix66p53hsr"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.38.0"; sha256="0rnaahbdqpgl666w9xlm6prrrnks2k6p83r625j1lcj2v533232r"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.14.0"; sha256="18xq8gg1j07gbbxy7r0cc34zwn40mh4fr39zzi8l3z0cymw73qs8"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.10.2"; sha256="06mp74kchxj2gq0n4rgxfvsm2p92hwd0zy05zq5fnig8mkqkq8sq"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BASiCStan = derive2 { name="BASiCStan"; version="1.0.0"; sha256="1an4kiipb3y1xixynpka0k2pdsi7a4s6h2mw2yfnwab1q6qf97kj"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.28.0"; sha256="01n9msbnr4x6hjlvz9z43lyrbxnmhi6bc655ir4cq0vizm1mk84m"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.60.0"; sha256="01ibjaym2kyv4x0fwv8mk5mq550lm1pqgrq40spmyrgb4vnwkh0h"; depends=[Biostrings]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.16.0"; sha256="0d73w5pcca6d4dscw12hwy823ls4xhvdyi2xbiixm9n0rx23wls1"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.18.0"; sha256="1j430ijy2b2j5x1y276vya25pw0qrcl2q11smr394jf4b9hm60qr"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.36.0"; sha256="0b48ravaaqbqvw35bamalrjnp77gqf13rp11wpd86m9ghpjl4gr0"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.14.0"; sha256="05znaj2fialxi937mhj2dlrm3v4j2wgqafcy78qrkz7xxn13pr01"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; + BGmix = derive2 { name="BGmix"; version="1.58.0"; sha256="0r4cxrjvf3qr5514lsw1s53h4by3djb9ipkz7bi979w343dn9xfx"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.50.0"; sha256="0ryd9lg8pywqlxj802y9jad5nxy40ivnzdq2ldldypwyalgk9ahm"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.22.0"; sha256="0jxxf4g0j5prarjq18ab435h963h1d7mlb4ssj2919lf98rhxl0r"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BOBaFIT = derive2 { name="BOBaFIT"; version="1.2.0"; sha256="0shv241jkzcyp1mydxpg6sjf74zxmc8dpsxdniw7c6arjfv4b39z"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.24.0"; sha256="0w97b34d6i0n4bvq8a63da1bnkmhhd2sclwhsixlacisgy5hdfls"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.44.0"; sha256="1rp2aa7jigi8h3qa55a1pf5zj06a5fpyqxwpc92w8gb0flmmdbn8"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.10.0"; sha256="1mdf8v2768vm1wfrcia9cs0biv51hybwa6nraddhccx25cnz1prj"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.66.1"; sha256="1gzpvajw5n3qmym3312qaks450sq3w456kj4gqwaabgpjxbq7frm"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.22.0"; sha256="1llxj25bjq68963nvr4b1n84400w6qb2gaa8jv7if4w8kslv5wvf"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.54.0"; sha256="1bv50vx4dyb1cz502nqknyss5vfh9cwnms65gcyrii5xydjxr1ch"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.16.0"; sha256="05a8sn7rd4d3qx46gr742aqgf0968ni2s238z0gxbg8sifjphii7"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.12.0"; sha256="1hnlgqd6igcpq6kfmj82v1m07ndq3nsx4iiv3j37gxy5pi367026"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.4.0"; sha256="0ydryxgas192fsyvivwjjrghz9jgxnvaq3igchmwvl50yxnggmzb"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.24.0"; sha256="16s67v6mkv14dkk1r7c50brm7198b84h87h1wrahmrrcnzq8pi0n"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.26.0"; sha256="0bsgdjchwsfc8aiwiacr454kw97dbymq6v450m1fx7hxmmpqz1sm"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.42.0"; sha256="07pqs0jkwcbxavc65sanvhvzc9spkk46bqnwz162f3pvrz15b5h7"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.34.0"; sha256="1zzh7d9c319lfncz73i1mcldiinqfss0b2jl0nhm836ygksykc3x"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.26.0"; sha256="1yk4zpgwy5dcgimqp9w7hscvg2irgr281f8zv8rp576c8xbzqgqz"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.26.0"; sha256="1rjqldr9vp8ppcwbclm8cvkpsncss31n449s6nsczmv517mjna1q"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.24.0"; sha256="1r4d3h6fvn946czpf81prqwycvkgmzlcypy8dl54diagvdp3dr9y"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.8.0"; sha256="1hqlr82fribkw9vs7fjwqr0impz7f5wfdm7q19ny17k8ald6mh21"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.50.0"; sha256="0309cvc9aq4nb06zysb7jvzd844pvw6jbjiqwhar6fg01cx255j0"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.14.0"; sha256="05w6b10vc4mmwdqnkcj7vnfigk03f03n776vqhlb38k0lx8k4hk3"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.24.0"; sha256="14fja1dikzq60zjx1arcv1q16qd0hmibqjy0nbaivmk3zh16spkc"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.18.0"; sha256="0awzq3i7ga6jsh7xgmrpzz8klx69p8cxj73p6h7ya43bgcr0iff0"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.34.0"; sha256="07b80qpkbas3x2yhndcm6vdkba0cpricyvnjf18dxklj5j612wfy"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.30.0"; sha256="0nr40nm87qzbni3w0cik887csc899jh7j8z82i94v15fc30vfilh"; depends=[igraph Matrix Rtsne slam]; }; + BiSeq = derive2 { name="BiSeq"; version="1.38.0"; sha256="0k9s0l2whvlhb2zmp7119drb8nlv8nlmipvws42vb87xb9hg4a4g"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.56.0"; sha256="1z7x30705a4ww9vdam2668pk064na5ispigqnaqy8zqvlfvp3c8d"; depends=[Biobase GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.4.0"; sha256="01gazqcvw9z112wlcljmb83vxz3bns9wgbfsccr54h8c957ynpbq"; depends=[dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 Gviz matrixStats plyr rtracklayer S4Vectors tibble tidyr]; }; + BioCor = derive2 { name="BioCor"; version="1.22.0"; sha256="0a8xyrmarb2ja5zyvx5sndd67hylmwi29gpr5lwrzinww8w8b8w6"; depends=[BiocParallel GSEABase Matrix]; }; + BioMM = derive2 { name="BioMM"; version="1.14.0"; sha256="06c36lpbmcz0s8v6dsjbmlmisab3h02jx67ycwlnymfwzw1hq1cb"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.66.0"; sha256="1xclmwxps7yvqnaw8kn6z4mlpx6v8xfzyly4cadsjaj2qm535xxk"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNAR = derive2 { name="BioNAR"; version="1.0.0"; sha256="1z0ln7j4ack0pv8bzxjfrq6ncsnd0jif5s42njm94c7j408fj9kz"; depends=[AnnotationDbi clusterCons dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr synaptome_db WGCNA]; }; + BioNERO = derive2 { name="BioNERO"; version="1.6.0"; sha256="10nwgp8a9chn33p5k7cdp920rraiw187xfrylyd9bq010c7vp7xh"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.58.0"; sha256="12c6m7dzwkdh4bk1c5xmzm5ajrsba7v62mag1f3rrpmrapdh6s0j"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.18.0"; sha256="1h99d6gnqw5v9ha2169zfhw9cvxhyjgkf4zm8qj1i03h2cywapgv"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; + BioQC = derive2 { name="BioQC"; version="1.26.0"; sha256="1ssxsxdm8vmlrmvvdz5p98apd3xsal1h3ss8556g83kgw830zsxf"; depends=[Biobase edgeR Rcpp]; }; + BioTIP = derive2 { name="BioTIP"; version="1.12.0"; sha256="1n90n4vz0cwz8irwpmrkm9qcyvk5rssl2v6wrzny4zwhzjkmvlni"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.58.0"; sha256="0rp541nphbcya6kbk1nzrrb05g5m6pxb3yqz5cj873di9vsqlyfv"; depends=[BiocGenerics]; }; + BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.0.0"; sha256="0p6siidrx8q6qr36fc67hzi091m2zwik3zngj27yllbfz6sn5k69"; depends=[]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.34.2"; sha256="1zj43kbzvi2ws8c182fp6vn5r6iiqsr6p2iyy3k8n3ifm2acqw2h"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.10.0"; sha256="13l5shmiiv4wl9m5xnwzagjxqrchjg9znvcgf7hv8f263l2yc8qm"; depends=[dplyr httr memoise readr whisker]; }; + BiocFHIR = derive2 { name="BiocFHIR"; version="1.0.0"; sha256="1b0mychyv778cf2jmib15jpjmh83s4sjr69qrjgmv0c7kvv4msf7"; depends=[BiocBaseUtils DT graph igraph jsonlite shiny tidyr visNetwork]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.6.0"; sha256="0skrvmkm6ch8gbpdi4wr59zk5vxzxs7cyqvz3jhki9d8w492wylg"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.44.0"; sha256="17dhr7vaph8dnvyklszyas7y8i64mxqxhnfhb6q3l47gq5if8645"; depends=[]; }; + BiocIO = derive2 { name="BiocIO"; version="1.8.0"; sha256="15d4xsn3k32q7lzcyxvs70f0jbh9fgwl3vi7xd6sqpggar12hh9f"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.16.0"; sha256="09f00rf5gwwlxxaycsciq4l53gjg5kjayx8xzhns2yf1fv297j9p"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.18.0"; sha256="1x4mzzjvjgcxg5xyxjib8r2n55hpf2vzcci0xkb7d8frakfncn9s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.32.4"; sha256="1m4i27zx3ajwygwp38lrxf36rs575dkaxxc6jawpj1kzn7whi5ym"; depends=[BH codetools cpp11 futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.16.0"; sha256="1av7vnw6z9cw7j4d3vpi8mfs5h4pn4yr2wc8ybg7ad1d686ah845"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.12.0"; sha256="197cy5gdlvac7jqwb4dm4dbqfms2nvc3paqs75nsg9mpp1h5z8l8"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.14.0"; sha256="041izymcifvi0pa97fh5000bwlyl0mdk9003i5bbvlld6mbbv2kk"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.20.0"; sha256="049j8rq17k84mw4pa9zgcn6814bdq4m5xcrxp730j183h8wly742"; depends=[basilisk basilisk_utils reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.26.0"; sha256="092hpmyhra755j32vc8w2l6xqwg09jm8apnk5rvxi1cm5034yvsl"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.16.0"; sha256="1djp23y131dyx4g22f9r7an177bq0mky94bvpqvc8b14166g0ynw"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.24.0"; sha256="00cy5lqmfap57bm2s00bis9ddci2lv1lrp0mk5ydgx061p4ym29i"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.66.0"; sha256="1z86s8ncl91pxcjnv8fwvgwjjnd384dn5paylwyymrigph4ca4kk"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.6.0"; sha256="01hxz2y906lx848pw64j78bwzm5yx9cjw0yshicnv0n2kbw1w53g"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.8.0"; sha256="03zpgd836c4qdbp8fmz0yb20pdyszs2pra9ih3b68pv4b6rx25jz"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.20.0"; sha256="010hmaba81swqsv0nqzs3ybg31n0b9zyjgxgp270az4bkrw59gjs"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.28.0"; sha256="0rw7127hgpzw7akga8daw6gzlqfamx347l53v6sx05xdgn451097"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.62.0"; sha256="08b8pm1vkwvkbv3dqldb9h1n7aiwih7dw66w8ag1xjp0sn9v9d7d"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.62.0"; sha256="1b0c0dick3gxdlrfjgx4dpgaqry5rd9gmpvdinfs94f9bfp89xyf"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.6.0"; sha256="1w7vfmpjhm2jdykzfqkfwz0hg52c3h1d3kq3j0mh340l0pc0bdzx"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.6.0"; sha256="04zdsvkdb532l9bnm14p5ycq4wjqgvvjsr9cq6gwsa87ly1wf72l"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.34.0"; sha256="03riynxr0gqf5qapplr78sffbdv52x3vp6x5yjzai09xhky9qa7s"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.18.0"; sha256="1iw8bf7dcgg3vd5l29pcrvbrx3ksc3dlp5nbhcfcqp5mgr65j4ny"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.4.0"; sha256="1lcajai32pnnjv4yp6flblv37a0f54mz4sxv6jljpgw6iyfy49p0"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.54.0"; sha256="17ygir00xjjxwlgmlxm0sw5sf645fxabjdziw4ja1ia641cpd6mm"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.8.0"; sha256="0qdydrrdim99aggm001380r8g6vny4wxb6kx2dbhk7b283whx0q3"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.22.0"; sha256="0n3x5w074x5hhgdf2qa0pkma4vrjwrcgjna7hx0az6ixkgpbkrpv"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CBEA = derive2 { name="CBEA"; version="1.2.0"; sha256="0nycc7xql3f589pwdzw19pmvbhz3zxa88dkdq0746di9agn6wfdd"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.24.0"; sha256="1iwvmw7k64n41qggxjxk3jbhrhpdnwfgn6vbm3cy467kpfzbzrzg"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.22.0"; sha256="15dm4ajhnf7wv1cs6kfpp4sxfqyl0x11d1bzjagwxk7c911p4a8x"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.32.0"; sha256="0lm7281d7gvdlkk35195zi2kjs0xj7jnr3gwkjgrvn6qhi0dk2vr"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.34.1"; sha256="12xnnnllpkgxi7vl8x97ib5mldh2b2kh66klhm1hkk0yfj3nrax8"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.58.0"; sha256="01n1z525h4h6yr3jfalgjg2g6lhd77sc3n33q0485x7l6xqv1dvp"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.60.0"; sha256="0860w2vf662qqii09pjdx85yl346jcldxiikhbwv0vg86blwb2g2"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.52.0"; sha256="08s3mdsaqv92f6mjj4mg1m7b13zpfm7c144mv754pnpfay2slw88"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.56.0"; sha256="1r6zi99jfq14jgw4v7nvad2fans0nd08xyg03qmc1j37hsnac769"; depends=[Biobase CGHbase]; }; + CHETAH = derive2 { name="CHETAH"; version="1.14.0"; sha256="0cizc0i5gqbn12kd4l5ym35w3k2ydqf0nmdhn7p3486ivp81f5rq"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.26.0"; sha256="0akw9l0l23kc18d9m5sgfcsnc22py07k77l0wqikpsyjzvvj94aw"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.6.0"; sha256="0w3rx643ing2i1b71fhcmqm9pbrw7q206lk7ncml3gaaw13lf6hc"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.26.0"; sha256="186akmq5s81849pa56f3cqdacrmip2h9i0n67qkv9jnxk1l3h2x3"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.56.0"; sha256="13qdhg5w1yga5sb4vack2srx5ly126g740wbxb55cg1kyqnzs1pd"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.44.1"; sha256="1f7y609q007mrjjwrs2q26yfgafaydim0van3v6p42x20k0n30y8"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.34.0"; sha256="15y27ca14fdhn2prqgkyikff7p7490xn0bp2c7cnwhw173mm1syw"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.40.0"; sha256="0ybxps1dnl7v7p68vkxqjr7f7zbmaqnh9x2gq1vzhcgzv767p1jz"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.38.0"; sha256="0y8wmm4sb28k4hk9cc59wqk1im79z13ahm232dcqh78772cw5w0h"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.40.0"; sha256="1d5ckcmj9dzxi5qxny0yqb6ygh0aqxfm31ccnr38awr9y2ysp9n1"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.40.0"; sha256="1f1699gwfvwsqmv7154h44jli5i49y8skha7p8mvawxm1cr86mg0"; depends=[CellNOptR genalg knitr]; }; + CNTools = derive2 { name="CNTools"; version="1.54.0"; sha256="18rl79i66z8d3addinp76krnyp9hzvprrihrksvcjkvrrl14adaz"; depends=[genefilter]; }; + CNVMetrics = derive2 { name="CNVMetrics"; version="1.2.0"; sha256="11i47ml2y5s8adh3qysasjl8b3w4xhg5h7v9rcdmd1hysjl4d4hi"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.30.0"; sha256="02k6bbzaj7q87nsg9zqda8dz44q3wshsps5pzm2764gxcwn4sz0z"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.14.0"; sha256="1if6k9iakrvq0fw6j2xpd26l13ikkpni8px3w76c9z0wsvbjf0cc"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.12.1"; sha256="0jkd65ncsbgwrrg0xs8ycj2lm9ailrayqqd6a453sbhx74gjsnyy"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNVgears = derive2 { name="CNVgears"; version="1.6.0"; sha256="0gqw8l7pswamjm4j1jr8ri1rpf31szlx9ba6b99j3iypisxq1r1r"; depends=[data_table ggplot2]; }; + CNViz = derive2 { name="CNViz"; version="1.6.0"; sha256="1nm8k4ry8p6k8cb6bqi6dyffi48fyhv1gq1277cz1nys31y0pdnv"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.36.0"; sha256="0jr9m08ip17l9w9i62nqdv13p5f3s7n0zyj4y3vy671s6c1syfiv"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.12.0"; sha256="01879lxdzxbg77sd5r8rw59kaa9s5jrsfnd2na68hsv41vhs64xf"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.30.0"; sha256="1wrxzdk0ldkb2svgi84gvmkg97m3fv71937harzhmwhfwbk2mlc6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.44.0"; sha256="0nmnvnz8qli5xxzdnps0ndyjniixd4qpm8kbigmyqi0zviha588i"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.36.0"; sha256="16wc5cipsl37707v1ffqpr55dks0m9ygv5a8v2llgdjd176dz1pd"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.26.0"; sha256="10yz0nwssgak0gndw9py5yksdq1syb7dfa33kvkhf5ljwyxf955c"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.6.0"; sha256="1mkzmjqsm9kqlabw50d8jn0jqx2iad1wn10il4j473bhamanwqg4"; depends=[]; }; + CORREP = derive2 { name="CORREP"; version="1.64.0"; sha256="07pr5v8sqzlvag1yapaz01pl54c8ab1gdq2hinhwv2kiyyxpkq11"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.32.0"; sha256="1w1rh8c7nwxwi9szkij1k675dp0rg0li2ppzskkwpxm6vddyspm8"; depends=[]; }; + COTAN = derive2 { name="COTAN"; version="1.2.0"; sha256="1i19p2a3c1z7j4fc88k2ynvk7siwbl320jhlnm2b3giim7rs9xp9"; depends=[circlize ComplexHeatmap dplyr ggplot2 ggrepel irlba Matrix Rfast rlang scales tibble tidyr]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.38.0"; sha256="1658awsdc1qqm3qss3h8cbnapahn9rd476rhfsrckcq7gdqqg69h"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.46.0"; sha256="0m097an8v06nx3alyj1gxz6i6g33ryrk1wc6pxia9kdb11rwzwkq"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.50.0"; sha256="09js7lh1ga8l3kfkqc2vzrg83r3jckhcr5fdx1078sp2rc1dpv2y"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.36.0"; sha256="1hnpg6ba73h5r83g8ziiwcai8blan5piir8n1r7rnf6ixr20f352"; depends=[]; }; + CSSQ = derive2 { name="CSSQ"; version="1.10.0"; sha256="11msiwpk2swb5ijs59adp794fa50c42v6sb2i4hgpiayqfbmiiig"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.6.0"; sha256="15p4fb3p1i3i2fy0n3qz8p9psikhdfk59wdypn0rivmp0g35rvdi"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CTSV = derive2 { name="CTSV"; version="1.0.0"; sha256="11simigbrqlmr4b3ywi83zb6jc4f21ava9vyyk5y4qfndn16lijh"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.24.0"; sha256="1dp7h2bgpiy9ywv4l9gii1pkm1z7zsilpadb3l2piyd3r747dwy1"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; + Cardinal = derive2 { name="Cardinal"; version="3.0.1"; sha256="0n8760dfwc5qna6v4b7sxwr20rk10pj2alp259ypgmpb2ryk01sl"; depends=[Biobase BiocGenerics BiocParallel EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; + Category = derive2 { name="Category"; version="2.64.0"; sha256="1j62b3ycvb27p80k1a1qj4pdf8cjynf5fkj65v74c3l1hgl9qxnh"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.30.0"; sha256="0nxiwnln696v3hw1m19whpajzqfb6y0c9dn3v154l7n84v0j5wd2"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.9.0"; sha256="07hzw8ynywfyvac3xm7llvs67mnlixjw5y9rz3sfvbfssnz5ihh2"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.4.0"; sha256="0kiariwn252ri27gsdy7924i98akx8bmpgr76f7s395hrhlrc36d"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; }; + CellBench = derive2 { name="CellBench"; version="1.14.0"; sha256="0p5bs7v5ya31z0hxaw52ccx8qv8yq86q6k0qcd2z20fia0f9471v"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.24.0"; sha256="172bmzk5g18slvym5w557c9wy7irb0mp81kanwn1csk0va3cl9pc"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.14.0"; sha256="1nl39wrrfp7kfxmm0m2n1x9rgwyykxpkmbpgvipgs5rp818ghalg"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.44.0"; sha256="1ym74v3kq6656vvd02y1m2czil9mgdr1bay3q6zlgcygmllq8n14"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.18.0"; sha256="1790p98zhjl3lpm4xcn3rjwizmzgpylzk7c0ndn5hlrz5ck3qmbm"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="1.16.0"; sha256="02jwp5ypp32hs8sxgi8ifv62sadlpgd8g8i6i03yahwz7pd8d3ry"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.8.0"; sha256="144d1h73x4gbymjka5a4i5nvqj7fmmhw9kdq1a9qmf0bah2xwcv0"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; + CelliD = derive2 { name="CelliD"; version="1.6.0"; sha256="1qg14d4fv2wbwcs0gsw0vvn3lny9sdk3k1ybxci8sd847r7jrahm"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + Cepo = derive2 { name="Cepo"; version="1.4.0"; sha256="07ymk3kw0r8sdk3fyssh93ap3fx2xq5mhznksdvi2i1k4rv2pc07"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.36.0"; sha256="0bd3kd3d67h3wbp7wbccwqppm3pfmvb45k4k13w772mawzr2k6ja"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.28.0"; sha256="10ss0a3miqrx92vy1r1h5rv3mnjn4iyl32q86s0x59d3fvqp2cx1"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.18.0"; sha256="1z00d2952qwscx5ljr7zvxm6kydmk188iiky0zprxl9hzp69iv17"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.28.0"; sha256="1wnc7zrnnxk3nlk2l9y4il75dzirndp4vs5ivxn5rzqr6p7h4bhw"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.34.0"; sha256="1kkrr0i30m1mnp274db2q9rwrgsrc4659smck62r07k8dympdhk8"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.42.0"; sha256="06yg5fvq0z63iz9jfpjl4bd5bzppz8ai9j3am1m5h1632xdlp3bh"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.20.0"; sha256="04gdhzvhqnq2w0dcx2153bkg2ywrmz2zjg323sajl1gm32dn036g"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.22.0"; sha256="0k4vbdwpp7z06fzjgqnmrx2yllayc0z2baj26bh4vji5vb48k9ik"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.32.0"; sha256="13syh3mvqpaqgfndcrwdmn7815f4myxhzjga9a9q3lspci25rvy6"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.34.1"; sha256="0jr9mc79di0r3xrc7m27vwk85qa4fpcwp4nb77pr9s6jbv23773r"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.52.0"; sha256="0h4bb676s8xz57pcwp421563fxapqpkxisikrjk6z5vb8c5az7vi"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.52.0"; sha256="1g0i15lijpl0wrzcr9difblh6zi4ba1p2c5kvdgqjjnw5gc7c09i"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.36.0"; sha256="0jm2igxkxzyfl6phxa1305cddfgslbrydbr26ngwy5403vhnfg1w"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.50.0"; sha256="0rk4ydanqxjh5yj0m9qlj06a12j7rkx9gxv6x7zpiyvnscahw63i"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.26.0"; sha256="1b24iiy6d5kzpixgpdkg4s1cb50jdrmgn9sjgvwr1qinckwz6zdn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.52.0"; sha256="1kfm73kma072g2hd4r65d7nq0ydnar7c63j658vjxi2r05yr6iaw"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.8.0"; sha256="0zvvc826zqi88gr2m4lzgmc2mgh83f9vc6f033l77a367v7p5cnk"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; + CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.0.0"; sha256="0jc63nmlkvx829h85fk8wh9sma200hv0g3a94slxhdiidnjph7l6"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.10.0"; sha256="04zf5bvwqgr8rk4mzdglrbys62qsqgm4d5yzn2gpyk74qb8jcbir"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="3.2.6"; sha256="0rbb0z1xixbgiig56n67cjqcnwgg3yj82bwg6zla5zm7i2mi72dc"; depends=[BiocParallel dplyr genefilter generics MultiAssayExperiment ranger rlang S4Vectors survival tidyr]; }; + Clomial = derive2 { name="Clomial"; version="1.34.0"; sha256="03xbkszrp760d7qzfflzrcj9hq42r1w2692nzsdzs7c5d4pcavss"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.46.0"; sha256="13fnw8l11gzvsn95kcskd0q064nay04x9q12h7wb2n9wbmi7s4av"; depends=[DNAcopy]; }; + CluMSID = derive2 { name="CluMSID"; version="1.14.0"; sha256="0lgajn2zyanz8fjq9rmhc6pmg3f32zsb6n9b4n60kx2wva3jmna9"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.20.0"; sha256="0qbd2hq6phs6vkvz63xdr3xmil9fngaphh3a5s452p0sk8ijzrj2"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.26.0"; sha256="1sa5nddssny2nhylm0560nm4bddn8irckanr0fj0s0klsmssrsl2"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.70.0"; sha256="11p7gz6bzc8znjqhpa0wj8fyh2f1xi0f53vfihivl7ladyml19lz"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.18.0"; sha256="0cc9anznijn3klfkp6hiqzwxwq3la9k5k6c88h37x9zh9r7sdp4a"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.36.0"; sha256="0z9b7azardbfqkwdn5bd2wnja6xzxm9qfhpcaar9xp45mz0a34h7"; depends=[arules igraph shiny]; }; + Cogito = derive2 { name="Cogito"; version="1.4.0"; sha256="14xaf6kfxj46fp4v1d35am700r5isn1h026ai3y85l5ilrhb4kky"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.6.0"; sha256="1zn93iwmayrqwsk94bcswm295ihn0v3yksliq7w92y6abb4vx4yh"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.14.0"; sha256="1mf0h2j31m57jd3s1sj8ijn9wdgbg452d79drdkxypxqvpm7b927"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + CompoundDb = derive2 { name="CompoundDb"; version="1.2.1"; sha256="0f7jj0bphgjjba7dgrmgar6l3zv8ln3dsaq2adcy22hkryfidm55"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.62.0"; sha256="15cz3bbl21vzf5xn5xb791sy2yvzir7h4fdqm0a5anhbh8jg0iaq"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.14.0"; sha256="1pbi17z8fmyr0n8yvvpa5lw36pqb4mv6apcakdq39s7wzzczgpms"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CoreGx = derive2 { name="CoreGx"; version="2.2.0"; sha256="0j10crmgsi0sm3cx27qbnl8d9yfn9w4wpkqaqdizpj3g5bby3knd"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.44.0"; sha256="1wbqycmmi307z61fwi2smaavh9rwjd65ifbrwkb2wlhffnnp0852"; depends=[affy limma]; }; + CoverageView = derive2 { name="CoverageView"; version="1.36.0"; sha256="0cqvwp0ybxgnk9kif3ly780v23pwv4cyh46kk47gxcxqqkjv36ld"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.26.0"; sha256="184bn5gyjj0s7wpnyrqxrsh47f7f9w020p5fbhbi48nnks38j7ca"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.4.0"; sha256="0g3629xi5hvkds2ixibr9p2ipjyr341nksafh38ap2w870whc31j"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.18.0"; sha256="1w5xy40wpyw6fj42zj2zf79r0kkdhn6h7wxzilh1dhnqkd0k8ay1"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.6.0"; sha256="1vvzw440blicfmdidr1sh8wiyfwmgrhmvazikm4f7g8jcw0cn9dm"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; + CytoML = derive2 { name="CytoML"; version="2.10.0"; sha256="105vdmwwglknwk7x7cb6b2jf6bngbxsly0ymjf8175p2lfv98jsa"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.10.1"; sha256="1cgykb70mxnhilwwp1jr4dr523zvjxpix173s4ldfh49064gzwc1"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.30.2"; sha256="13lhckx9nk1av23y0agkscdsqbb46q64h1s4mwm6846kd88w6rvv"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; + DART = derive2 { name="DART"; version="1.46.0"; sha256="08nmnnvz4iy70jsd0cnp41mzh2l9mccxnf62lbrhm95kxpsyaxvj"; depends=[igraph]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.26.0"; sha256="01hzxd5f5v2kspx5jd7l21bn87cfgm9aah3zd4d6kyxv98h5a3n1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DEFormats = derive2 { name="DEFormats"; version="1.26.0"; sha256="1mcjwck06akl8zm6bkrcjqvqrfdzrcd59qvnxw5iri46i8vd7jac"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.50.0"; sha256="1g0hbkwr0fwgy9zryn3bmp1lfqpplqh3489bb1z7w12sydphi5ik"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.34.0"; sha256="0i75hdainn9sppvix2j2m0faprq1ajdkjm8bl2h1hxq8s7djmq6c"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.52.0"; sha256="15x3hb767j1s9snx3zk2vbyz3nvb33gsilpkidcncswj140h9cr6"; depends=[qvalue]; }; + DEP = derive2 { name="DEP"; version="1.20.0"; sha256="13c1g4dqbrvw1cjfgxjgc5rwp5zvfrh5sghjlpzssc0l5m5y5c7s"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.18.0"; sha256="0an41nr2xy3c2f5fnh6krkbyvs8w7dx1828yv1anb6d23lnqbz66"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.38.1"; sha256="0xp3rfhwn8k1bqzqnjzjqlaq8lqyad7kqjhb29vkbxgzjvafvxmk"; depends=[Biobase BiocGenerics BiocParallel geneplotter GenomicRanges ggplot2 IRanges locfit matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.12.0"; sha256="0y3v46ib9g581mkmhjr8avqj1lw2kgn9wdgylpggfvbv9wfyjkwc"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.44.0"; sha256="01728hag1c5fh4n0v57k1p9ss5rqgckab4cnj5flp750myi1fbps"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.16.0"; sha256="0v0jaynssmf8pyyjkdr3yg5p7y6zpjikwl5hdv2k7i52lnimr2r0"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.18.0"; sha256="1644cq4ryzjw2q8y8jz4pyzs4wd0nsm5kny6s5spfg7xx543qaap"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.24.0"; sha256="0z2ghrmnr4cmzw5vrqjf351p09vprir9kwwish65byifw4s65rv9"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.6.0"; sha256="04j5h3ijmhzkgs02r0vsq3p00i4ydcnnis4kn1a69bp3x1bnv0n9"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.56.0"; sha256="1pkg4461ib1iplcrlwkwrqzdzqixj2rhwwfkhjw87z4rx04hz3gf"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.6.0"; sha256="04kpdab8h0krxqzsxl3sb1gsxqwrrdpsn7irgdpns8qqjlzcbzv5"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.12.0"; sha256="00j362frx70vj326xjppkzfd36mvfq3ym58dnckz3c0jb2dxv3wr"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.20.0"; sha256="1cf5i3ikn81qw0s3kbx2yl15fmgwal22yqpys8wya8pd2agbi4lj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.20.0"; sha256="1mx0kk1rbn0mkk94mm1a7mk64ia315fvwwb34adyslmyq5gq93i5"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.30.0"; sha256="03d7rl5z1pxdwxya53mkf8a8n9jzp8rb8awhfhfd22dgdf2l327h"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.12.0"; sha256="0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.34.0"; sha256="1amrbmijqv0w96qc813abl12xr3sz8a92gfjwg7zm7l7dz2gjss9"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.14.0"; sha256="1kjfpysf70lxc2sw0ggrnir91d6kl9gvc6vhx3ivzxah92zvp643"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.28.0"; sha256="18sivwzl8gk52dnhwls0i4imw78rkjlwbfrcaas1i53q0bmw15i5"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.72.1"; sha256="1y2qnagjrbjxn4xglv2sxr6fallkbmbms8fq9icv27pm5030y4xz"; depends=[]; }; + DNAfusion = derive2 { name="DNAfusion"; version="1.0.0"; sha256="1b1k5gs1rfk02p9j7xl186ynvsxax8sc2l9r8vwr53w37x3fzh43"; depends=[bamsignals BiocBaseUtils GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.26.0"; sha256="0cj1nff3kn0d5djddapn37gi47739c69r61wp9v3bcvwcvq6nlqa"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.24.2"; sha256="0scp6sgb1iwwfh7gdak4dxf1hb870745km9nc9hga8pnsnqi5v3g"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.26.0"; sha256="0cj3fyb99fh30f35ra1gpvzwplszbwvwk33ppgyh1zx2axsx164w"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.46.0"; sha256="1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf"; depends=[Biobase BiocParallel bsseq]; }; + DTA = derive2 { name="DTA"; version="2.44.0"; sha256="0s7z24ka29ki3gvx0831k4cxlnismk6gh92rqg3sx4qk4srlplhx"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.10.0"; sha256="10qpr9p6sqljq05rc2gkh45yh5rsmkh51prqq349b3733d1ld03y"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.28.0"; sha256="1x0hyna6qgz5w9y7j95wyyrvg7rx8pdpyp9dzmic7q0hycjmg33n"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.14.0"; sha256="02hkkxkj6fv4jxlq3mj1hxd1zi42pvis8ffcwxf25jk8j19j124c"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.40.0"; sha256="05rwqchfspy8i9fcj9526rl5vvk0rrgr95nvxzdj0sa2136my8y4"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.24.0"; sha256="1as3jjsk77aczikd7lniiqih5x20f0wgf5biy4rlnhr0mlr05di6"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.6.0"; sha256="1n81lsllbbdkl97dlw7lnpg815siiwk3xsivdfy166dh5jm104yl"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegNorm = derive2 { name="DegNorm"; version="1.8.0"; sha256="077mi8986l1f9nzjxijwwvbwlzj840y4wc3qh2kvfvk9k5a81pi9"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.24.0"; sha256="0nl1v0mxb759wiia2rsxay0cv0q631gqyzgaa10s175lhzsb8r6p"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.14.0"; sha256="1r2fgww105433nk2r9sakqszh39l1zhh377wl5q9vnf00iasm2cr"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.20.0"; sha256="0qcn7rlq0bsj11sc31wzks2xv900fpmbsblxp9cng5lj5cn2djk3"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.6.0"; sha256="15g6agzfcp64dqs0mi0fjggkn8cqi9d116j8i0kjpb9sjh9882i3"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.4.0"; sha256="1lahwbgwnkiw98ij2vjvf81baas3s35i357392jz3ps8sw7m7vs8"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepInfeR = derive2 { name="DepInfeR"; version="1.2.0"; sha256="0887lyqq6sc12c9rzida2r56mnbrw313wyysy7g5cf18bcd2xcmx"; depends=[BiocParallel glmnet matrixStats]; }; + DepecheR = derive2 { name="DepecheR"; version="1.14.0"; sha256="1j4gxgw1s3a0nm888k02qi1smxqsplc42827ks666md025h9bxcj"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.8.3"; sha256="039gy9ll6ingh3y5h2hp3rhbh2imaryjxzgf8ysk87irlbpnx1qs"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.22.0"; sha256="0n6nyw0vb0hvi9awpx6igdgdsfd91fs520aspbxlb33jcd3x0aaz"; depends=[cba]; }; + DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.2.0"; sha256="0qhbnac9726ywci7bbmgvjbyyxzqjp0rxynfha4769lmgl6fi1s0"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; + Dino = derive2 { name="Dino"; version="1.4.0"; sha256="1jvhcs24bi0g0hzi3dk6ny6wq8h2950whkqimdqyyglwy7lcbz1f"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.24.0"; sha256="0bnvagsqm5cm8l2g18fyavaf7s93hwfi75zmggxiy46xqn7s1718"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.40.0"; sha256="009nnl3zwcsg6mh7wl3j856dpi7awkyxdy660rqmiskn7m2ah4l1"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.14.0"; sha256="1fky7w82zx1ynmzfrslsih2639ihhzlj0pa14bwzj1g7xr5p49bi"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.18.0"; sha256="15k62maqj4kbv2184h5j0j8rkmbcskvmjjn8z26kw296ihifis6w"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.20.0"; sha256="0y0lxbjd1kqds3rx77sb4agk8j35xh8k698assrbjjhwg5gjfgid"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.38.0"; sha256="0sryp2w0lzalqhk2aizj0lrbxj60illfzg6vzg8isqzv9ic4gnqd"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.18.1"; sha256="0rshaskx9nwd57aliwhk9gc0h6ccrvzbaikyjpbdz1i1zf4fsf77"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.40.0"; sha256="13xry8cdcidc7g2hl30pwyi9gg1kx2zw7w504fncmjk9niz5m95w"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.10.0"; sha256="03kjhck5ypydzz23cp5avah9kpz74i61v9mi89rr7wqdsad3zyif"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.76.0"; sha256="0w8x997npnphd91s3nc9f0s4vb94ikszw5mrpf5lfv3n25sqgvhb"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.40.0"; sha256="1k6gbivwlai451whq2vr3c0shzs9p4g188jn5waw7973gdzdi00q"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.26.0"; sha256="1pfcpawbax3ld4wwn98b13aqrwzdgz8k4x63ncckd2jdanq1l01r"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="1.38.0"; sha256="1gh1cyb76gv2h0knh780648gsbgpn76adfj6x3pjzily5m5bmin0"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.32.0"; sha256="1k6c2qc7xvv3f094zddjdbjj4hlfxsv04gf5b0zdphmrhbhb8r9m"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.62.0"; sha256="0kg22appd9sd6knm129hchkamzilwr3h8wi4ibrvllbfmx31v9q8"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.42.0"; sha256="0was3sjr5q420inj42bl0ifyd55b2brzbv2nskswskar7myad3yn"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.32.0"; sha256="0hx4als33lvdchz5s6cv2axvjyp0k8p3v0lm51jayhjcjpmihqzp"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EGAD = derive2 { name="EGAD"; version="1.26.0"; sha256="01wxhrfbmhabh8ci95c3drll7g9lc9zpgmlac5b5blp1ar60a2if"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.26.0"; sha256="1cjld33vrnlm6l8ssg6x4w7b4ack2xa1lpy924phx64zv44fi3s9"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELMER = derive2 { name="ELMER"; version="2.22.0"; sha256="1cyyl3596dqs3qyz2ngdlbz8pl8hr5y2gnh5yby8pab4z1sxpr79"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.28.0"; sha256="0fz8p3g9cb25v25cmmkwldxijplcm1wn99aa9i7s0zi3i8426vv5"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.34.0"; sha256="0zg64c18ag11yqxayir9s5xgmani5pkpv074c95vnf0pysi7v6s4"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.16.0"; sha256="03ns14cbi1c9jcmxf4fhv5f7r7hvql33wz9n9ddcrn43xki8r6vw"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.6.0"; sha256="1d2sw63i5jy1fa1q3cwdvd05xd8bb0k66zjdvpgsds9m7mvw75vb"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; + EasyCellType = derive2 { name="EasyCellType"; version="1.0.0"; sha256="1xry2kgb7ha2hg82jap88px9xxcq609il85xi0k0gilla1swvjc1"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.26.0"; sha256="1vws49a204xkwixdvp5l62in7vxbpf4qsfcnm34zkc4kx5hval9j"; depends=[]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.16.0"; sha256="1nbg2r097rz24ybzh9ww6myd6kc2rz02vbg6g0rb3dlng0002xsm"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.27.2"; sha256="1il5cj5zmjwp3drw9psj1nsp94yxd421kd7jqrv34p4r1v0zw5z5"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.28.0"; sha256="0sjm4myq5nqrkk10z8k3i4az46zwcrr20rrs4vrvlmvz7fzspamx"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiCompare = derive2 { name="EpiCompare"; version="1.2.0"; sha256="0h0ap1xa0g57zh4djr263d97firklsvb6nwq0dk1h39j8wyp5j54"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.14.1"; sha256="02pf0y8sj1j48qfmfjckr4vx9rz3aypb6iydlpfvhcm829jr51cl"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiMix = derive2 { name="EpiMix"; version="0.99.16"; sha256="1lqjfi8q3fbqqbd3ykpb68php1iwy93n59dgjj14z1xb56hfwjna"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges GEOquery ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.10.0"; sha256="152snn75nixdas9n3g80f32hmdrqdyv71cl8fkax5jl4mqrp6px5"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.6.0"; sha256="0z9bcqfwi8mym1pwywmvdmiszw0whpz4svh7jgwjvza94z5w5ly5"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.16.0"; sha256="0m635as5xigkjqlmwh32afbbxffjf6ahrr83gr8z886z365h4m81"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.40.0"; sha256="02aw2kjpg2xfmx0xjphsalw81gixwd2yrw73rcbcxyz7fpq98c5h"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.6.0"; sha256="1j71zmxwiz82gg6kii2bmynzwll1r6fmsq972kmvxvm6crpvi15s"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.24.0"; sha256="0jkbp0pc6zjjwmklrd23grxrk200rw1wbd78w3qcicgzfnz90gar"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.8.0"; sha256="1jfzxca82cyd4hh4jk9nmwjwq608i8zs2nfjiclkpk0hh0bf6j22"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.10.0"; sha256="18dbcalpk4m8ziqksgp6kxd4gm8ip0l5sydnqfd7mjzymhvxsbv9"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.26.0"; sha256="0z9x1j9wrqqzqdg8c1vy20lgd9dfq9z74af813nkag8qph2nhnm9"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; + FCBF = derive2 { name="FCBF"; version="2.6.0"; sha256="124c25x18xkhyrizfzchj4xkg5hwdw3935gyibbvgxj6b3l1ph97"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; + FEAST = derive2 { name="FEAST"; version="1.6.0"; sha256="1yk2k0n6nafzh594rydnnpwmznv64iqan9p7137n72vpbcav9ql4"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.18.0"; sha256="09rl9zna99rydqk8vfdlmfx0g4cg0zaw27r153ll7hpcnnkx18z1"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.32.0"; sha256="1jg7qiq7fdlw2fg362sjhalrdbvqxxrzb0q7l6ih4vq6qxjlyyyz"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.32.0"; sha256="18sj688bm80zldj6d6w1ic66pk2qzp7liwp9vjmh8a80i6xxlnkm"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="1.4.1"; sha256="0fbf8v1daw77a7cy03hfhd7rj70wld6rbphgvp095i3xgw9j0p1v"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="1.10.0"; sha256="1ql4h8j4yzd408w1frvzyf90ksddy6jgg6gcqhfx0qh114b12r7c"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.34.0"; sha256="0xnrrrhxdgcn6033kj1v780s7m58j2krc8hj1y554ddilf90jwy5"; depends=[fda MASS]; }; + FScanR = derive2 { name="FScanR"; version="1.8.0"; sha256="1i0w5ai5si9a4m3s96grm75wwdx5g2ah4vg0q95sgjj68gx4ln2c"; depends=[]; }; + FamAgg = derive2 { name="FamAgg"; version="1.26.0"; sha256="17avlg6x7kan3lq5ffvzq7lmrscnm0h5vj29hhspf6zn8gwpi86f"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.16.1"; sha256="1xy4b1ppm9jlrxzzr18f0vcj91wpai328c1l49jkrz3cc6s0hap2"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.8.0"; sha256="0i7737mzg557yg23h730pvxz1gx37blbh7krla4p4nqmic2qdrcy"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.4.0"; sha256="0cid8lvh5zck421ajfca320n4lxr7jafmipgcvk86zd89izz72pa"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FitHiC = derive2 { name="FitHiC"; version="1.24.0"; sha256="1c7jscl82knbh5ha1i1hlm46nnhz6aw5h0j5xnl4hlgx8mnn05fl"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.6.0"; sha256="1s7xilhhc55igq0zmvpfzhnh5df8bzmm3daknz75xhzhhg5b7z1c"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; + FoldGO = derive2 { name="FoldGO"; version="1.16.0"; sha256="1b4h4gggxfv12lvxsjk1c8rn9rrlcl63p8p61i7wfbh3nkzx62r0"; depends=[ggplot2 tidyr topGO]; }; + FunChIP = derive2 { name="FunChIP"; version="1.24.0"; sha256="1wjbjmppizpgdxlkq19wa5v1yvkgh6cal2cqiby90267djq9m8y5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + FuseSOM = derive2 { name="FuseSOM"; version="1.0.1"; sha256="0wx7f7y81sr0qmz8sza1rpg3v8d9z6rc2z6df83ws1rwsaz5zn0f"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.22.0"; sha256="09kfjrsbz6sk3g304kqk0zy39v10sb758alyvajvjj7pfkdv67ak"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.20.0"; sha256="0zal12pb48hwam9zan1a865i5njrvzg9dc7mpd9jiffp7q9rrwi9"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GARS = derive2 { name="GARS"; version="1.18.0"; sha256="12mfqv9ag1rrig8wcpl5zwvb68j7g1cdrw5ynlkbrgxcwnibpmnq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.24.0"; sha256="0x2mkm6fq7772fql2whjp1xcf5pqi06ywzj8prb51yz8s8zqvzl2"; depends=[glmnet Matrix]; }; + GBScleanR = derive2 { name="GBScleanR"; version="1.2.4"; sha256="1jdldghw6kmck732bn38ix66ys7l2dx0nj0136m8rvsxab980kxv"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; + GCSscore = derive2 { name="GCSscore"; version="1.12.0"; sha256="11d8ygc8lfyzz7vmwvi6yy3lf6pd8fsichg6ki0lkp459nivbdi8"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.18.0"; sha256="0f2nqdcygpmcwjngadqxri3y87ylrg0f67ihg7gwd4afqsbckd62"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.18.0"; sha256="1knaqi5pslqkkx7fd93vmkwcxii7rbyj13s89iy54snlw29lbchj"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.24.0"; sha256="0lbs7igiq8v0y66pbr0jvxcadp7ni47mjynag7m352k87633nann"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.28.0"; sha256="0lca67dxnwpignglimc67hpyhjg6ybwqz9sqhg4yqg6m05ym15fa"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.20.0"; sha256="096crx7n75x60s9sx3l7nld3yvrsqs0clvjsdarxc6bbn2qxk81i"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.4.0"; sha256="1gjb0xsfg745sckzwz0v4g1jh6ikwkbvb5k9cw15g3cnqc5xlqjl"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.6.0"; sha256="1k62g3k60rzddg6k7f88pkb19ip6zshm2ymi1gz10kf9xrfj0d97"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.60.0"; sha256="09xfacrfdnnm43pi0a96zmw1awqgffq1izdyzpnjd23ks4hjw9hk"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.66.0"; sha256="0ck2aml1kxdahwcszi3j7hcikwi8fdnzphlrsn3h2q4dkk5x00kn"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.50.0"; sha256="1vqdh9nbib40xcwc2j239ijjdrlgyx20qb5ji99639v6ibia02wm"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.42.0"; sha256="1hkqv11apwhvg89ky792m6y0aml6hmxbqkk622r4zr1snkc6ggxw"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.10.0"; sha256="16yz5vjf76bj3jkds32fxbk3032ni57aafz2crp2rzrq0rlvk1bq"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.16.0"; sha256="1gf4zzxcbh4g54div9ckjcx6yha74ilzqbmjzifjg1ybixy9d2mw"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.22.0"; sha256="0j448iqr71hqbfv9r9f4rccy4phfhcgy7w8kij0idw2mjpvkpyvr"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.62.0"; sha256="0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.26.0"; sha256="1q79q958wpfrl6q4g1yl6kxcw38817rpbdnjl4k4xzk3hf5jmd7h"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.14.0"; sha256="0vhdn8nrp9fj2g1qdng0zdw5crmzcck3rwvvzcswh2p9pwg1cfzb"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.24.0"; sha256="14wc7qgk1psknld05246cn0nqxpbjprax7j75h5yyd0w7hjyly2s"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.36.0"; sha256="0hxy1x1mkygd0r7n38plpb3wj443kak413ml813zzmhvrs39zvnf"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.34.0"; sha256="117vbz1yasav1p92x2wylmsc9kc5z0qv4jsvd1nf9b2ndxcrgxd5"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.32.0"; sha256="1wccyfy8wkgns12r2mh7w6zfwjqiqhv1riyk0s4ivax2vyqmhb65"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.18.0"; sha256="0d0xis4nns5icsr16w4ik2d95n3p2h93c47jvlp22crv7f4rlaa5"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.24.0"; sha256="04kr02whakm65gqy1h4vxl9m6s9zl6hgwd3dfdk8106npyrjqlsb"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.64.0"; sha256="07chyfkq8nwxjgnlrrwza8jw996dq0ki4bzdfalj9yl1iac1pnys"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.34.0"; sha256="1fgalk4gs1vajax7zngq9caqdw0r9ryjz0vydjr4n21ypjbc9476"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.10.0"; sha256="0gd7ln4xiagibzdzhfqy8m7v35yp6vm07xhbp7ky5ipq1j2nzpcc"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.50.0"; sha256="0bfi8y0ps4flir7yvl9wgdpy9hiii79awc20rp8qw5d5j3wbb9by"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRaNIE = derive2 { name="GRaNIE"; version="1.2.0"; sha256="1qxfjgv2z7b97m9mcs6h0qfg7pwkai0bhv8mprgl3j1cra9zl9li"; depends=[biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect viridis]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.24.0"; sha256="08jjmlr1xiilfji6c42bcaf22vjvizhj1vgxxxzmda349cxyc1fv"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GSALightning = derive2 { name="GSALightning"; version="1.26.0"; sha256="08zkd2vganx424g8kkp2ny9dzpggcvj53avsjk7gx2fr1l8zxhmd"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.32.0"; sha256="17i6v0wmcl7qz96aqaf596zrdfndja9nvrzy298vsz3xgb9x0jx2"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.28.0"; sha256="0svf5cz8dq6ghv6qvpzrhziks9nchkg3izw3ivqnqgc9b7h54cds"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.60.0"; sha256="0i8fliln3v9sw9x34pqafdx1z6jkys8b11fkz4ihmw8lc8lfd0x5"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.18.0"; sha256="11j46g9knb7da3xh5fq68w3d3z2h73w08dc7ml35a3336f52604w"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.58.0"; sha256="0xzywh8824xiggwgw88x2x83z75wwrajiv7qk7hgp1zw2mg2k15y"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.8.0"; sha256="0dlj9s2070bms5ih896sffniygcnwbvbq6wphiwsljgcs4fb94sf"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.46.0"; sha256="13nhiz25h66c8ql2mcdx9zvlvqyxvhvy2xcsh2z42jggrnbq026p"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.32.0"; sha256="0zz1xlf3n0bwlvpn8r8bi5q54rjaj2clnzg773ksnc59nw1bkxzq"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.46.0"; sha256="1vpnxcjd9npbmqpffdr6gl89b17jcjykkr725z9144xkaqclbw65"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.8.0"; sha256="176qh1cfmy1cv3773fhy5x0g7qx9rnawmkk7n77mikbp45c8yvi9"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.28.0"; sha256="0bvns0sqwmqybfjcy9cbdwm3gglf7fisllxmvqxk9ky270jc31zg"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.8.0"; sha256="1h481k2sz3mbj5wq8xfi78gc97p2370yadj37pb0hw1mi460xx4c"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; + GWASTools = derive2 { name="GWASTools"; version="1.44.0"; sha256="02fi0vqk554l3akh841lam4wfknzi31rpbgj560vjfgpwvhz5r9q"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.8.0"; sha256="1w27nwgs6087a5s0vh70365ikv60ahp3jvhridsqy9n038wp2yhq"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.18.0"; sha256="1s37haxmdh84fxqjvvb3dvaha8ds2khhnfk8z7jpsx1arzzlm9r0"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenProSeq = derive2 { name="GenProSeq"; version="1.2.0"; sha256="1fmmyb2lhnnvr8s9l8pljrkpzlzhbchy0sv6q72lgqbnxr5p2a5f"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; + GenVisR = derive2 { name="GenVisR"; version="1.29.3"; sha256="0qqcdxjpkj8dlwq0najlbvp6lqby6x812w0h3ds9n8b06mxddzp2"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.28.0"; sha256="1rq7zw6d6i4qrich9g00pshily56y704q6llwgb39609m1h9828c"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.44.0"; sha256="16cgfw2fdggkzklb13qf7mravbjymg6yazl7q6iqdrkwlhpxl0f7"; depends=[Biobase]; }; + GeneGA = derive2 { name="GeneGA"; version="1.48.0"; sha256="136z3sxjps1k63ivr0cmqg7xkvbzf7j69vwkfbc1n00yfapiprm2"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.24.0"; sha256="1j8jkg5cfkizd62rqmagwnmbi5f3c9bix7q5si115wxnc1nfc8cd"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.70.0"; sha256="1ggjnbsmjnprdmbpcb0ghqaydr95d7vf9q27z0kg1mb6djd92n26"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.40.0"; sha256="023ibp69gb322csc8g7yz2l1khhsh20zdqxf1apcv0mr5ils6nga"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.34.0"; sha256="0ii3ymysqkhyvj204zigpgjny0cglggqmvw311gvgkdi16dib1qs"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.54.0"; sha256="1q7fgxgak5fahmxy17ys3g3k1mqihinyhnm0f7dfvydmd25cfx84"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.42.1"; sha256="0cg5zkkg1bd3nxaxpvw46xbi4b7k1wnl0zb40qh2xizvsmrkw8n2"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.18.0"; sha256="0kn3qgdzi6wdr6r34s646j082lv11hng71l8waqiip2xn7xqnjww"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="2.2.0"; sha256="113h6s9xak7qpc6wgkr33sqr7s62xnx78ciz0jhhw4ya5vbh90pj"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.60.1"; sha256="1haqy46wfkgwbv86k5fw6q0hxd98i75z5rxjkzpl2dhara0zmkna"; depends=[gdata genetics MASS]; }; + GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.0.2"; sha256="1qcc6k6nnx6p4g8pzzdvpqg3wc8b26ml3l6c24mjki7630xvgxy5"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.34.4"; sha256="1nskqmlar85zg96c1fbacl7dqg6r0gl814rc7yh482y4wgmwyg0r"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.34.0"; sha256="0y9yjyzch0cn2j4yrwfp0z8qw3yqvl8h1dlrl7ylzy9mwsqc6wg5"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.22.0"; sha256="0wzkhbv1zalx05l3vwr9qjr8335iwyp47pjnapcn5if49a55m8c1"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.6.0"; sha256="0kknl7ras2wir8775m0spl8dya6pf68l1br14wzjrxxwsdlbfx7c"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.50.3"; sha256="14pn7lngayascj5k84g2g748assbivpiakss247cdj9ngzx5sfwz"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.34.0"; sha256="0k64m9f5y88p90wd87hy0ixj5ly5yi413al9p2bn10b1fjx2c451"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.2.0"; sha256="12mrnc2wpsj87qkff5kxz58058wzvr8s94pc98lvf8csha6sf6rc"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.32.0"; sha256="0l14hz5pr0wlin46y8ycpvk5hp2ld9ajx11y85rw5hlwv50byfbb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.12.0"; sha256="0jq8llksadhls1174g22kjr0k5vdsz99k9h2ypwfji2j05c4843a"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.50.1"; sha256="14m4pvvd9m8kpc7k905km9vib7giq0i9g11bxc1ygw30ifi96966"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.10.0"; sha256="1sz0gmwc5iam83pxnc702pd5h6nsa46kb0wsqs8ysb1ximbkfh5h"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.6.0"; sha256="0mzwn9fchaxkpd4f85bj63gnwnrxba47slrcxmgv7a39b1yjh46y"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.32.0"; sha256="1wahzm5vk1l5gcj8y8ngkp9w1yzk0b5hsvx53mpcis08np9x64bk"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.4.0"; sha256="0ycfzy05kr638a4hydhxl36n9qmdjb2gp8njbc49xgq5qby6qpgc"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeomxTools = derive2 { name="GeomxTools"; version="3.2.0"; sha256="1rhld2s6ixq8djnqpmxjbibkrksxgvn4giyrqm8pmmkqy3awczs6"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.14.0"; sha256="02svr9mnqzp3gy8gd5b5d53mc0gdw8vkdzyhxarq52bp711q8g03"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.8.0"; sha256="1fskabpd3xlrbhqvzam9ibpxmbdys7y1b265np8hz4k704ww1g22"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.16.0"; sha256="0z3c9kcd17chsnypl5kbrdaz1pdlaq687aq9y9yqasqp8bb8lqwv"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.12.0"; sha256="08a296vyl3bcrak3bpgb7il1r8w1mf7hwhc1qvrxfjlj7w1v1yfm"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.70.0"; sha256="1y4fbxvcrb6gndz69g17ya1ad11anbxbiymdvxp9rs363kg563ll"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.62.0"; sha256="004ivwdz8xdpvdakc9i32skh9f7rj8d5mf3r1ap2n1al53ymbjlj"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.40.0"; sha256="08kpnqpmicm3jydnx4p9yxmqf7rj4br8jsi6zv04qq4f3mz1l1ii"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.30.0"; sha256="02qzvs8fmh79g4cc5j2gxj1wazpmly7vjr527qlsgi3jmc3swxgz"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.14.0"; sha256="0lrw1v82amr54bkfh98953b16fhlgd1i6kz1g7zy8gj0hd417ms1"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.42.0"; sha256="09j94kk3dd3bbfw6a2l14i7vd4rh11g9lxhw4zsm15vg71cm1lv9"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.26.0"; sha256="1y25mlsqf2inij6w2825xxl30bdba971az6rjf7j9bnya3gpvi6h"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.32.0"; sha256="1x3j104sa69qcymxzsda460fcwphk2kfy9hbh4jj92jqglqv6npp"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.56.0"; sha256="1j5wa3w32rsj4pzvx4dyg43m2kqmnxxyrd2gaplnq9riwgmqgs0j"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.70.0"; sha256="03m1ciknphvh6vf0jl2n53jjqdggjaakvfpyx6ba0zspa88pw2lk"; depends=[Biobase]; }; + HGC = derive2 { name="HGC"; version="1.6.0"; sha256="0lxjfzwcmksfrfgs49ad7idv93z7y7g35vir2sxacnmprs451nar"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.34.0"; sha256="11ybx1r91r6m8hflmj5bl0531yfqpcjclkm38xjq51g4q5kjypbx"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.10.0"; sha256="136wsy70p87yva1ipdxg27gsz9mran9q9050frrx91d0fl1q7d94"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.16.0"; sha256="1mrymcipll2rj8xkh0h7ggvkazdlrhw16px6kc4xfwkr65vs4p7g"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.40.0"; sha256="0p1jn2lyvwy9kx83kmpxjma0fcar8gngp3hmv35qc2qa0ns6ji5v"; depends=[data_table]; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.8.0"; sha256="0h2i5aihrwhka4qq5xka1l1k5kwx1sn2j0xccgiwkm27743y1l68"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.16.0"; sha256="0kfmlsar5a8ypq412fzm473phadqy9s1icn1idwbk9hrv6a9h0ch"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.4.0"; sha256="0rpfkkicc1bhzwxfkh29wz154vn651aydjvri9m8py0fw5lwjc21"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.38.0"; sha256="15fxsdh2zaz42i3zrpk8yrvgwg8f1jk8f184wjdrkw3jlxh46k55"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.27.0"; sha256="14w7fmxmcs81m9nkq33nrsk98pb55zprnzhrg6whzkid9g7fg4y0"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.52.0"; sha256="1kclvh8f2sf534cjw07ry9nx74n6p7r0vmc3mk2nr37yvpf26b3q"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.26.0"; sha256="1gfdmcjgr3vnafyddcg8kvw0ls7303r2z7ql2lls31x4cz9las3w"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.70.0"; sha256="0asjgcnwawg8x7ql0srhb2011rvb4kr2cpsa1cy28nfmjfvdf0qm"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.6.0"; sha256="0zbjw9f616dz1fpp6q6whbmlrf2gypq8pp9i66c376cs2aifp1si"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.24.0"; sha256="049841bzm0mbj3vhy70yp1r4kc95lqn1yz52ld24b9m2svwzwzhc"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Herper = derive2 { name="Herper"; version="1.8.1"; sha256="18jmxkw6j7y10958q48phs5hanw3aqdnjx64r9qymg8jbf4z5gnr"; depends=[reticulate rjson withr]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.16.0"; sha256="03m80snh7k7gmkjj19rxgch2bhwlwiibrpg3wc2gyqiv0007c6nl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.6.0"; sha256="0kq6p1v4d29f9x1b1bfad4gqmi61cjv8h10lzlfkybiqvqgv717d"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCDOC = derive2 { name="HiCDOC"; version="1.0.0"; sha256="06814r4nmznixr9iq7kkfr5cj8wpgyfykscz454pvz3fzflfxvr1"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicRanges ggExtra ggplot2 ggpubr gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp rhdf5 S4Vectors SummarizedExperiment zlibbioc]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.20.0"; sha256="0hvv3bp0fk03bg7ndnr7j4p1a56xavbpl84941fngc45xybdqjmf"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; + HiContacts = derive2 { name="HiContacts"; version="1.0.0"; sha256="1sbvlfldfbill61vih6ankmqz63r9ym6p3l3j7fy8pl4q1bwv5xf"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicInteractions GenomicRanges ggplot2 ggrastr glue HiContactsData InteractionSet IRanges Matrix reticulate rhdf5 S4Vectors scales stringr tibble tidyr vroom]; }; + HiLDA = derive2 { name="HiLDA"; version="1.12.0"; sha256="0jlx7x06lrxh86sbkcnyabbv1g1jyf06dwj0wmlx9q1q7n0wn08d"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.42.0"; sha256="10m3pq22a8m8bbfkmq5r44ydg2668g6dxmxp7km47jxgf9hlqhcl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.28.0"; sha256="09l6lllp0sqb1m7fgdxmq05ng4qr6817l360s7ly6cigkaylq6s1"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.56.0"; sha256="15xql3rq1g2p0ih1ahjv2y9rwfrzrhj9f4sp7qrrhha9izas4v6d"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.56.0"; sha256="1x4clsjdg95wn4n65jyh1fyhnamma1897mq9jg16akvg7d48q60m"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.6.0"; sha256="014alfgyrqk8l74jsnz9lkjfiracrrdg7xv757qawvkwzl4phs89"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.14.0"; sha256="1jlq5np9sxdznxmbqjxlasx8ksy2lzhx98sf6svkxjw9p5qxpxlk"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.42.0"; sha256="0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.26.0"; sha256="04vbf42bzqydf5mi4mqmcyh0xdx4phs4cjhsm6fimhmjhxm8jyry"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + ILoReg = derive2 { name="ILoReg"; version="1.8.0"; sha256="1zqlj87p641xi77vgdskxyspg2pnwmva3a4sn62w7r8blik4j3z1"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; + IMAS = derive2 { name="IMAS"; version="1.22.0"; sha256="1kc30iq5myxqx81kl9pkwm2lydg0n8prch7f4nvm175myyni0950"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.18.0"; sha256="1kmpg3zlhdg9b4dgj2r1v67kdpj17383v85ycik35lvpa2dh9xa6"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.34.0"; sha256="1gasv2i11sfdsinpg46b1lmjc8g864wzjg3791zx43ls1qnslgdh"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.12.0"; sha256="14ivj70sdzii9cqm5qh76r92i7pscr4scix7pn6s5zfs7g2z5sri"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.34.0"; sha256="07sjr0z3m1jchlxc1pqp97l4mydskbkh1xw41cwsw39r9ssimpni"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.28.0"; sha256="126cbanan2fr916spacw6lm8hzkys56k7z3gq0r351zd7q13gky3"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + IONiseR = derive2 { name="IONiseR"; version="2.22.0"; sha256="1xkxqavhcw22lhij87cpd5ps1ldkzzi0pp93d38pxbbhj15gc3d3"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.24.0"; sha256="0hj1kprkkv9ab0akblb89ww0iwsqlnr0r6d8i079fif197ikfr08"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRISFGM = derive2 { name="IRISFGM"; version="1.6.0"; sha256="1dhnv62p9crdrqi4kla33hykl4ag7agcb298ycgszc4h8mmslgrc"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; + IRanges = derive2 { name="IRanges"; version="2.32.0"; sha256="0jvavhl6p2di0n5176gg7shfmpg79rngl2gaw423icswdf8kay89"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.8.1"; sha256="0lshyr3mg3w3h4annx0ssjv9njlyz3z79gl3sw2dq0g7viipd6pv"; depends=[bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; + ISLET = derive2 { name="ISLET"; version="1.0.0"; sha256="0iwcdvq5dzvdsiwchlmlzfay10x5ci35i905xkiil6a77l9s57iq"; depends=[BiocGenerics BiocParallel Matrix SummarizedExperiment]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.26.0"; sha256="07xw0cg121xcv85d4ah67a38x3y8h6gxx8zwrwqffp86vfzqwcgl"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.58.0"; sha256="0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.18.0"; sha256="0nhmxxj0gdbsx18a2cn2905ylf1m6h514ak51fxfrl3krcjz3flr"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.22.0"; sha256="18mdhld2m3pjfmnaryfvdaa0z6h87hjcy0dkx5vkpjn9ph0cc7pq"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.70.0"; sha256="13ygc467nqh0235sf1ags1ihv7pg2yriva6qi7z46c534vxv6b8n"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.34.0"; sha256="0jpj8bkfm3jcb5fj0xhh13vqh2dcgdgi4i1qk3wx1301irkk7fgf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.12.0"; sha256="1bzj6ckkwj430pwzy4nysk0k0vbjpa9mgibgabl03m7n33irxvza"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.26.0"; sha256="16nf2m2vij7vx8nxmwk6pc1im5mia1x1y7kbwn0jcfm5ac57mzpd"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + InPAS = derive2 { name="InPAS"; version="2.6.0"; sha256="1xbkz7g8yw43dbqkck42ikgrwi7yym39kbj65gpc4fyjyg5wkhln"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.18.0"; sha256="1fgrais14665nz0cbsmzgzawp6vzlv5v4qdbn56lvwfr4svd39ly"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + Informeasure = derive2 { name="Informeasure"; version="1.8.0"; sha256="0ywffwxl3nx7w7p54ixlr058l92s2d17mrnfj9ngqxl7w3g16vfp"; depends=[entropy]; }; + IntEREst = derive2 { name="IntEREst"; version="1.22.2"; sha256="0cb3bwjcjh8ixqiys7279w12mwcx3fz5k31qpakc1mgj2nvgqsnf"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterCellar = derive2 { name="InterCellar"; version="2.4.0"; sha256="1aqx98w4nnmb2xmrs70wqpywvq39qdmsna021ywxnyapd27w27l1"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.20.0"; sha256="0rp6fyhlk3dp22z5anfzx2fjw23azm4hajv67spayh8j8q9fsmkm"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.26.0"; sha256="14fb780f2g24ay28dy9xkmfziavbkj75v4vc2cmqbxfdsfp4yn0w"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.6.0"; sha256="14slb0g72d8ikfl7f2ir6gmxdkry6gsjgh3irxgkkjy9q880zpqi"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.20.0"; sha256="1l6bf5v1mvsmj4zqv19zfji52d6w1y08p1grqlzh6j01xjhvpz5a"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.16.0"; sha256="1a298xaf8ricx09bv8hxy4d67ii57vz53rbac2kqszdg2pkfayzp"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.14.0"; sha256="1rm1vspgfd2733y1y828awz4hwn3qqhmfsx8lld6814iqrv63mxh"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.20.0"; sha256="06kcx0a7xxzqhf4y8l69my5chh06sfahsaz6anhana7shym3yif5"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.6.0"; sha256="1w7m30dpjwbkgvvhvllgycnrzalah4lnan08xpr3cyx7nbr0pbsb"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.56.0"; sha256="1v7hl0lwr407fap71q8wsdz3d3ac2nq1blaz9wn8jb5j3yqkdwy3"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.38.0"; sha256="0623p6px259v000pp14c2rknjgivx9c90b626q9bln0qw6wy97zc"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.58.0"; sha256="0hpsb009qmhy9p67d5wd0cl60smhgjlhxsz5f52i1c6qy4jk1niq"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.24.0"; sha256="1xq10x5cirp2x3amrvprggsf8mvibfh40wa7fdnmkj8y2igf2r4z"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.16.0"; sha256="051z4fcwis14ic4mz36d4aiixx3m6nndi2kj3yzykf1p1hwksq3g"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.12.0"; sha256="0cxr3f67654h3nyjm4yaghw22wdb67jqg37685haffv1dkvfkcwl"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="2.2.0"; sha256="16z28avyljma30kpp4ygw76yc7h3brz4sldpr6zailnrqaxkrzmd"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment tidyr]; }; + LBE = derive2 { name="LBE"; version="1.66.0"; sha256="00460w36ayf0b9ln7v42i3wwmxyfy1hdm0snc01gaxf5276mvrai"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.10.0"; sha256="0an9m4qca9slcp847zqxxc5mk26lmmlrd755r1pfircgaaixda3f"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.24.0"; sha256="0xhrdq5s5cn6vvp2h1pp871vncmxjkr9dmzb9hrykpc8pfvbj9w7"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.28.0"; sha256="00fk1drjwc7smbykq3qcl382qqd7kcjpcamklq48pqgy2mbjyk9d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.72.0"; sha256="06wmkwx633a3jjqhcp586x9jqic51sxyy11l8zhipzvj07fcsy70"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.58.0"; sha256="0cm8hdwfs0nrxyf6z1xwfjkpxawlh9mszmng4jakppcr9rl843ir"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.8.0"; sha256="1fgvck20w1gix7slszgsjnss4b85mp0nkb9x4sl3a0nl9qfsjz1a"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.6.0"; sha256="0n5z47b4gdfyrzqrjc7dw0ja2526k71axjr3001gdfm7mx09gvmv"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.32.0"; sha256="11rjnc9l88hlfwz7ppmliisx3m55nllmnikxiwjr6a6fx7rbhnk4"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LinTInd = derive2 { name="LinTInd"; version="1.2.0"; sha256="0nxjy9lrfid73dspmxdpc7davcnckl63s9bl796r6vmwkkcqfy76"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.18.0"; sha256="197ki29dbnm5lidlp45nidvskxpa7mdhihmlfz6qkvnbfr8c3rhg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.12.0"; sha256="02yr5lmqxkpsgqfb1jjzy1cd9mfcg2q50szjji3mdadyg2c8i8rg"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.22.0"; sha256="0ndhvdd9gkqyayxqgj5320sgj15di7ji945lpdi3rj5lwldh7na0"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.52.0"; sha256="0jf0njw4xib0wf24k2g64jg3agglf0jc9fymcjvagc70z9pm18k3"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.16.0"; sha256="1bjqg5krzxm3v1mcy208ccbs2d1aljkbpav6qz6zgwmwpsci99dz"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.26.0"; sha256="1wlyk3gpy7j5ml3n3xs6mmxi9bv1ixs6gw7i2rkb513wnrxb9bg7"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.20.0"; sha256="1djgbnxsdp1w9hhc6346gmvad3x8avy8nc85gpvg9i4x52wcrn4j"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.24.0"; sha256="1h8y27d0dnmg4k31wl2k556r4h7n7iq2536770z7ci0ir0i0y4b6"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.12.0"; sha256="1lxq7fanfypbzrh2il4ib9fplz6hmr0y3cdg9waplvrf1scqc8pp"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.6.0"; sha256="0ksbmj8jh87nb60h1lfwz4gx40lpryc125dh554wsy48i0kv82cs"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.24.0"; sha256="025ny68gcsd5pbj9g8vrnzymgq52nq72zbwsvgjl7f2b6jnbd6w9"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.6.0"; sha256="145xnlnkpqmb18jawwizr53y4lw9d1nxc4k60lpvl2z2fn8hm3v5"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.2.0"; sha256="1p58hcsmhgia1rlr064nfbd3kf0rlmnvabxlr2hpkw8b1hmcvrz0"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; + MAI = derive2 { name="MAI"; version="1.4.0"; sha256="01cpiiwzxkar8zr4q6bs2mbkh1hqszr71gzmbbp9z0b88805arm8"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.32.0"; sha256="0i5n1bjc8bn4cx5b17d57m6fhk4m486cqnj6cn1zyyw0zy8z5sg4"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.70.0"; sha256="16b30bmyzml97cjdbh6h9ky5c4h5ws2a3g2xkxnd55sd3jg64jgx"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.24.0"; sha256="133ijkw5sd0gl38dfr7qfqvvp2df7lg6j8vkvy54zlpamkg6l2x1"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.32.0"; sha256="09v229vgxwhf3vx8nx2zb0g6rzqgfs91w44ly5y5r8rq2n9qa0lz"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.32.0"; sha256="06jhcv8nw21qnzbf9law4dvrgga47di02q3124sf5v365zasnzr5"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.52.0"; sha256="1376537z1hzc3wb791nr13icp1h04z4jmfga2kszxsza4iw01hnr"; depends=[preprocessCore tcltk2]; }; + MBECS = derive2 { name="MBECS"; version="1.2.0"; sha256="10pyc41h3r2z5f0r7l7cg0cdyaxc2psm4q2d08dsddh8lpyc4v85"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; + MBQN = derive2 { name="MBQN"; version="2.10.0"; sha256="138a7qfqcy904vlycbaif3wn9k1iwjafwvadbm3nscpz4k9x7phb"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.26.0"; sha256="0jgyigd60bbqrkg640i6lv2lx6k52il0k9lnrcg67v5z0xrhrrqx"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.22.0"; sha256="09sl5bk56wgs0hih492n4qscdc6nx68w6nx0cxr0pjhdvgrybli0"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.18.0"; sha256="1jbkv7fpqla3l9hpr1g6yn152653agvmnpcljgnl01mx392xnblf"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.28.0"; sha256="17wy534ir65vjv69m55pd6vvfdhyl5w170wbm91r5l7ri1y0r9sl"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.10.0"; sha256="150cs39xf0fnvwh76vvhf6f6ill5gqmh7cf2svhi19lldg4a569n"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.12.0"; sha256="0axd2kahwy5sc6pp2bxdi4ahb6mwfsgbhbcm51l3g5jr898z8xia"; depends=[e1071 SummarizedExperiment]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.50.0"; sha256="1zb0w4d6qvzrb5xp0bfcc2mfxyj618ghw3ifhx9yhl7pqp8c8ny1"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.58.0"; sha256="0qli5ipyv3q5qvpmp1cdqvgzl6giarg458apqyspzapwvvnn9967"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.31.0"; sha256="134253lygmwszxq2bj38iydd44rkas10cbjnz3dikn90gg0xhada"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.32.0"; sha256="0ih7hkziajyf9flxg0grfydqylvk0qr7v1wrbp1wyfh2d1bkl8l9"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.24.0"; sha256="0r7gka30g17v22rsc059p6fwdcdpyb7n2pl93prpbkpv39lzcik3"; depends=[annotate biomaRt]; }; + MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.36.0"; sha256="10c07s0l2hshcvy4ym3mgq7k9569l5am2k4mx83wxwicidv607hi"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; + MIRA = derive2 { name="MIRA"; version="1.20.0"; sha256="0709kl7m1nj5jbvlsr4hfk5pr268vgvig8wq353wc7wqwq0j1yhn"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.78.0"; sha256="0xnaghm65ydk01gzx5g38jyq7vfdw206c2w59k0qg8lhy9fqky9x"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; + MLP = derive2 { name="MLP"; version="1.46.0"; sha256="024h8mrwpfp6nkdzk6y6v0jhng1z78h47mxb36gy1mbklhknllbv"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.16.0"; sha256="040gm8bnp110mhj05whkdrfl46lrm82fkyh6zba50aap8s2mp2b4"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.12.0"; sha256="0rvhvsyg2g1i8kipvg83c19nyr7xj061fnda9j771mbgagcbwma5"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.26.0"; sha256="0rhnlzci5zs2if3lzzn2nif3x72a42fpxkm6v83d3krw9kb9jvvd"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.12.0"; sha256="0swazk8zh6s88994w5jd3n8s6mfhsis4i9hahihdxqah9i21ihwg"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; + MODA = derive2 { name="MODA"; version="1.24.0"; sha256="17bfazy4wxb8idrn8frf43nrggn5n0w4bsxzmlhxjq0jm0c9ki25"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.8.0"; sha256="1i8i7n9iki16nmwmh5fs9afj0vqls38sj7vgxjacdsldcdwxz6h0"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.8.0"; sha256="0rpz06rvxxxsgwb6xnk65mp2kz4jvhsr06qvkkknmyxc7q66ycb0"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.10.0"; sha256="048lvnqa3wpi4bg7j8kh8dl358zppzrb3xg5ghdgk99xbanwmkqy"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.12.0"; sha256="0x49p6f9q6vc8yn5nql9ryjd85zcimw3hy8n5wklwpx4bc3xadjs"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.34.0"; sha256="0xr4cpvr83c7mmcbm99bbgg05qd20y5vha73m4if4d8ba1l7k2mv"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.16.0"; sha256="1pgl0q4il2ywnbdb8pmhrwqlmjk4i5xkv8va933748fijy194pw8"; depends=[BiocParallel progress SummarizedExperiment]; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.6.0"; sha256="0ch0qcgdzdz0035b2nm468q0vsvk9blws6szq7261znfvwmqpzxw"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; + MSA2dist = derive2 { name="MSA2dist"; version="1.2.0"; sha256="1248xchv7nk47w1lp61nqyhmmrfnm9vgjiiwn7ikb417hxcryay7"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; + MSPrep = derive2 { name="MSPrep"; version="1.8.0"; sha256="05bq27v2iwmrf92y6fyzczvnrwmpqy5b7faa3z4si68fhpa81p2s"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.32.0"; sha256="1ljhxbyq5pa32sh44f06cwcdq79xh5nm51bpx1i8xig3bvwyg7p9"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.24.0"; sha256="16apm4qn7sbv06pk2i8k5z7qgkv0yq0h8ri32vikdplqxxh7h0cz"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="4.6.0"; sha256="1zgzqrwmgwc68xdkwfaxpgsiqmypq03skn3ks83nfy1i4dfh3ni9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.8.0"; sha256="1nnfjlxd3g69kscs0k1pywk4m9v1ixf6wwd909sl16gjb81ipmn9"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.6.0"; sha256="1hg9bjx9rwsdpj65mzd931lbyj4gb26x32mly4n1gkk1rf6iplry"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.4.1"; sha256="0hj10r3x1pql0497x3clk9wlv8xvbcvbv35q45x1ki8hfc5b3ifc"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.0.0"; sha256="1mawiphdv4syh6ch4fa4jin7dfyqy3klxl4yla4vv25sal9byn3j"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.16.0"; sha256="1x55d2saf8y45pp4rsln6km8iqzv14pzrsw3bjc2x6z67v837f5i"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.18.0"; sha256="0mbflhwlvrq18k6gavsj2d32ihxgnaww8zdncadxwnlgv6p083kd"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.12.0"; sha256="1xwb8bm92jlm2q1047v02x9v69h305l940s2a8dxjqpb42bhg1nf"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; + MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.0.5"; sha256="01v9gnplf30jpycqkfssa5pi2fwv20shfqp1cd29m05canj1ni36"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT shiny shinyBS shinybusy shinyjs tidyr uuid]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.6.0"; sha256="01kbdkxdgy3rj04ihzr11ljr6mrwdlks97ygwdmdn3lf1jcsb49k"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; + MVCClass = derive2 { name="MVCClass"; version="1.72.0"; sha256="1yzb7m7vk50f9x1g8yb95wlmpccj3n4qgczz46lvhsk7hkifybzq"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.22.0"; sha256="1j6ixgir3mjx8xdclh2wisp82xx6ardm4rm6cz6ihdss2y34w6wi"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.12.0"; sha256="0ncvsywn9f8766gjb8nxzg82p3w30g8pjs85sy8s0bz9ilanpy89"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; + Macarron = derive2 { name="Macarron"; version="1.2.0"; sha256="14fbijbjs73piprh6irlclr4yv87waiw6wv91sz5iw1pxrhp7pli"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.68.0"; sha256="0d42m4zbc6pzfph2ydb11rcxq7h64fvv286zx1vh2scvi8j9655a"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.50.0"; sha256="0jxlnl466dgbn0817h5vk5h52cblyq1r48pvk9v76dzdc86llskx"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.64.0"; sha256="0l86gwq073nbx973v99b0lr9cz0pb72c4asmgj5w16jykicrnxn9"; depends=[]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.10.0"; sha256="05a83gh5bvgadi2msgql5nmcgr8zp398rhdbmiqna608hqbymyq9"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.6.1"; sha256="1l0wnfyg3wgjr35qrqdh1916bklbvf7s43nsc05vqfsccs9a9a7k"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.30.0"; sha256="1y4h57n7bg6hmaszq1bzf1qlyl2p378928inca7s68ygigibsh6l"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.34.0"; sha256="1lg13vqlw3ibjpssbgwg1mpy778v22xnrr92wjfqpn8s4h057z9f"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.70.0"; sha256="1j6scmghs6mmi0wyfxy6hsf363r90wy7njq1334xaq4crbj3kag9"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.14.0"; sha256="005am6j14nxp0qwyvg870349szpybx3p0fmyiwjl3zghzma41xfa"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.26.0"; sha256="1svw7jk4xv0xm66qr5w2m2fz9k4ifd8dv52b5157p5apv45jdd45"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.8.0"; sha256="04c6y9hv49db4dy8iv122lvawhc9f8vj66ipzh6qfvgbhqm8lgc0"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.28.0"; sha256="1vpn9mpn6fyrvnp4rfc37s5z80bamb73d2w8484x1aim3vl467ly"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; + MetID = derive2 { name="MetID"; version="1.16.0"; sha256="1zxhqvx6zhy8zxckih3pnafzqyivygq2iw5scvv0cv01hhkj1ac5"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.16.0"; sha256="0d52ib51j44ic8zy0x1hmmi0q1l71n03qcra7sza0d46dpna6k8g"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.20.0"; sha256="007lwh9yxvvdr5xhnrz3krh6v9vfi386jh1040x2cnw2x5p2hjjd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.18.0"; sha256="1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaPhOR = derive2 { name="MetaPhOR"; version="1.0.0"; sha256="12imh3zwgrcaqc6gb0p6jhhb37km8j7n6cfp3d5s1rhcg2c180kx"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.12.0"; sha256="08m1a3gpl2zx8yw60h3y430jflagcl7c5gn9wljl043vr84rnxpi"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; + Metab = derive2 { name="Metab"; version="1.32.0"; sha256="0qllncdvvab093gns9jb39kqvb4v8mm61aiva4hmy5hc2sk32blv"; depends=[pander svDialogs xcms]; }; + MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.2.0"; sha256="03731wq7vx52l986fg32mw42f95mvzmrarppnrjfg80dwsnj9qgp"; depends=[BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.6.0"; sha256="14y53snkyis1njx0vr7hy9jmn4lbw72k14x74spmsslcik2zadav"; depends=[MsCoreUtils]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.28.0"; sha256="1771mmdlk1i17lx51fcjv0lifc11rkk6x6qv5k03bq1fka5nfnnl"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; + MethPed = derive2 { name="MethPed"; version="1.26.0"; sha256="02vjnxzl72np2skgr6kj2vfkpf9i1ll0sdicfajr5rgsjzlnjpjh"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.8.0"; sha256="09vzarsmjm06fvgay0ysmi5f81g921dx513i1w2s6k97d8zv7z3f"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.30.0"; sha256="1rz12vh0j96wh7chzbk88f97fbg49g433ahb0c55lkgqn6ql7r1g"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.32.0"; sha256="1kzfwvjb8rzv5jghvzgfc9p85727b0v13lc8dibn4016mgap06vk"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.28.0"; sha256="0687kfbcj11x5idbdkkhymqxjl2f2k877wqzx506djmxlbqgac60"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.38.0"; sha256="0db4fxli829x3na4adzmk41rf3zwp33xzmj49w9n9c8s8k5bhagj"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.58.0"; sha256="01kdccfjs01a2ya22g9zig78pjvi96aq9d14js8jvf8h868wmffz"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.52.0"; sha256="1ichljymsal8mnanqck89243lwpf184r47jknd56ksvpn2s6a0ja"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.70.0"; sha256="08ini3nj077k7knp3zsmw33yc0wpsnszd75dnp9vdn141d1kvsmx"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.40.0"; sha256="19jgv2sgqiqqyqcbfivj8a4qrb18ryyl74rpp3805iisx44rnbkl"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.4.0"; sha256="1pl2kd24h88xs0asby3zz2agx64carkd0sjm5l3mj1340b77qk5l"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.10.2"; sha256="0p74n2nkh341bknlkjsff4cm8hlbdnaxj4n35bhp07q6vlaclxf9"; depends=[ape Biostrings coin data_table dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.38.0"; sha256="0qfk61qfw94r3ynzzvqxr9flswxbrfriw3n3yv499gk33cswb459"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.42.0"; sha256="0r59a27nl6l28ck3mm4icpahplgxqpqzibiahw265fsl8yzx2zk7"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.2.0"; sha256="0i8ljpjhvvfa1wg8ycm9pl0l0v3zwr4q7yr4n99nb88d54z89a5q"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; + ModCon = derive2 { name="ModCon"; version="1.6.0"; sha256="1whwmf7qma0xz8bjqww6vr2idazgqlykd5mmf0xzryr1xdfbk54h"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.14.0"; sha256="0r9smk5026pv6487xna1qsv9a6lc044xpzslbrddxyhgv0d8dz2m"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.24.0"; sha256="17xff4sp4raqwcqgl2fc1j0k2s299cd3g0d5kdmmily7wvjnfrgz"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + Motif2Site = derive2 { name="Motif2Site"; version="1.2.0"; sha256="19qjkcqrsag2gycwqmmn19d2vnkn2graa8sidhi1vl0nna5ycm36"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.40.0"; sha256="122ifxmbi0v3192cd9chq265i3dyw3hzwsndq3w97f4d68vll7gl"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.8.0"; sha256="0cp0y793d4mvz5kh7rl7ysl969qvwg7dvrvqjh2i9hax47s865jg"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.6.0"; sha256="1n5mbd8mmsci8pvn3884i2vvr4dydw083kc851y4cx4ldbbfsfnk"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.6.0"; sha256="0r02fl6fq0g7l7mdlza89x1zkm3c16sf4wr1yrqygfmxf47q58xa"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.2.0"; sha256="122s5agwac8wzsdj1igjyk8dgi5vgxd2bhymcp61sx5l1x7c0678"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.4.0"; sha256="13bkjbk5h4dr719942bghiqprrkgwg7z82vh88cn8jf8vg2bd43d"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.10.0"; sha256="1shrvb2vmvk1m6xk59jqpvrxi8vzcr978aalbx1gjcmaqf6abzcq"; depends=[clue MASS Rcpp S4Vectors]; }; + MsExperiment = derive2 { name="MsExperiment"; version="1.0.0"; sha256="031j106yaf1nal7nf5avg6kg216w3fplcnici8j45dwfd31kjis9"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.6.0"; sha256="1q1224w31wdaagfv8ysc1w0d0n34y547c0jzkff1vxri9pb0w1j1"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + MuData = derive2 { name="MuData"; version="1.2.0"; sha256="0xi8ldjv7nij11fggaqk91wdyf1nbv66hzqxy3y67hj0rkqxakv5"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.48.0"; sha256="0r900mhq2yi7gv1y9vh9lvaz97mk785ih8lvndncg0q6xg0mfq4v"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.24.0"; sha256="00lhnqa4yz3lm5kl79bghad93iijihnassy2caf87czc540why09"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.8.0"; sha256="0a3snl5djp9z0ggd39dmz0qgr0cvapsd2zs3xbwqah3dxafwsh2k"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.26.0"; sha256="1qja5xd42wh8qbcil4hhnmh9zlby2gfglax2qbf5bzg3h6yzpy4g"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.20.0"; sha256="09snrrgifz5wl9a0av87rccq8fh1d03h38i6x2lfmpak5m1vc270"; depends=[]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.6.0"; sha256="1sng3gra750pa0nm1jfpri2pha9n8rs1ncn42ddjfm330w45wqpg"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.8.0"; sha256="071s1hfxln8zdr303g0ifmajd3kcfxxb6dds0pz67chc2gmgnd9q"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.22.0"; sha256="0gbcfyda6liqimd4rcjbmfcjj4zymibfm94g46xv75ahypf5rm6z"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.14.0"; sha256="12axvrs0zbp82n4lv89299vm6v696352d0jzm398vpbkdk3jn6y2"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.46.0"; sha256="06y04lbp1wn1w9xy3lsqcdsycp4cdlrcyhga5kn1a4skb48bc6rc"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.42.0"; sha256="1j0yafl5r1vsn99zkhvaz2mrwv37l4p8ldgiq09d9hxpjq9ls7i2"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.10.0"; sha256="0zph5lxw7ysra897jkbrmxjvb4zd5q2knl07xw8q5dyphjw8bbr3"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.48.0"; sha256="0vx5swxmw76vba5wwl1qjyyb2dm7vg9wa7jsky93knhdl0s2fli9"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="2.4.0"; sha256="1ybbpc6v6al0vdgcbsyj921hpcyaaghdaf4cfwrd8wmlha75c2y3"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue limma patchwork purrr R_utils Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.28.0"; sha256="1fjmp78q3hsnslarb7w39r3kcvf8m9jrzcw4na6k55dqp5917lys"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.6.0"; sha256="09g94vksn5zmwxj25q00ja3zk259psrj0vvn95hx4k5ldjby10ys"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.30.0"; sha256="1wfqrnbz2wcgxf2hz67z39zgy41m0ygf8a7gk1x22ry8y2irkipm"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NanoTube = derive2 { name="NanoTube"; version="1.4.0"; sha256="0gyjlj15bymib12b8j5ng66h6ixqj9w2arcd3x042djfqnx2crj9"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.8.0"; sha256="1irjgvvycw1kx2nisqn7982hn843v4jncld7j712hv0kn2py3hn6"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.16.0"; sha256="04yxkrc2qscx9ckday90b6hmar4zfqjdan0phmpgv622spnk16f3"; depends=[graph]; }; + NetActivity = derive2 { name="NetActivity"; version="1.0.0"; sha256="0jf406i34n4j3mx3x9543h5a8pngbj5hsl62kx38f387bvki6zb3"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.34.0"; sha256="19pybhh43a9bzfgq7j4pk7w1flqx1mpz8pyqazgzichpgc5wbzx0"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.38.0"; sha256="0d3b2h0d8d9zdqa1wjn3a6r55aa978gma4ajf7pgbp1p0y81smm8"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NeuCA = derive2 { name="NeuCA"; version="1.4.0"; sha256="0v6m022y7xb70f5z5hzsdg2rv5gdsldjd34bni8k9r8fd04d2q18"; depends=[e1071 keras limma SingleCellExperiment]; }; + NewWave = derive2 { name="NewWave"; version="1.8.0"; sha256="13zwn5qzh9mjhp6d72yndymwbmi4hb7s8qg6ji0nmqp53gj30lc8"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.10.0"; sha256="0bmqgpiwm65wqr5wr6il131kllzpxc0mgx38adrncggcgxx3risg"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.16.0"; sha256="0fhm924r32sw5kjnpj9s79c6s6davb97whi2g8m62aii3c9di2zc"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.44.0"; sha256="09cj78p7d11sichaxh5cgvd44i7mv8fs71j4sjianzky9y19474y"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.6.1"; sha256="0gn1nbri1jpa0sf751fgyk4x80930g9dcw5cxim7i4n6isb33xaz"; depends=[]; }; + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.4.0"; sha256="1k923fqfjqfhlp648bs09xm1nb23gmh8n4y9jkdrdf05czyl73az"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + OCplus = derive2 { name="OCplus"; version="1.72.0"; sha256="0517ib36cppxwf8kpyxcrm5hnvzd2z1gpahslfr7cns1r3si0byr"; depends=[interp multtest]; }; + ODER = derive2 { name="ODER"; version="1.4.0"; sha256="09zvr01cgwc3rbqlbj8dr6yh4ghv1yha6ygl222458iq8vcwf6cv"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; + OGRE = derive2 { name="OGRE"; version="1.2.0"; sha256="0rnrg6xwi9xgxyzzk1qkyqh4k9yzq4q6wpliwgp8myf37yb8sjcy"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; + OLIN = derive2 { name="OLIN"; version="1.76.0"; sha256="060d4hflnrk17vs651cfh2dazyc6avp3gjvp9w52y8jbfnnwyvqg"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.72.0"; sha256="0rqrzaz052kggi970whqiaf6sjs66dfcys1jrmx3909fz65cz9mg"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.16.0"; sha256="0kirg4xnj19igyyxzybdjl3y833zniki2s20lcg6ygsr7kmrc1g4"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.20.0"; sha256="17lhz1sf158y5adsw9ibww6jdmrsqihm6g9nhk673wvd8i9kg3s4"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.6.0"; sha256="0220mwfpxals7p03l11banpg7i593bxmk3dqp63jfx40m7v1x6v6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.18.0"; sha256="1pgp4g6jf1rmfgfk3ggms7fs5r81hygbcp3z4hj5l665sl5n22kz"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.46.0"; sha256="1w86yf0bxrrfmmqknw59z2p2a0gfpnf54r139isd3irk0jhwwk50"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.48.0"; sha256="029f1hjvl5wzydn6k7436hhmgvhf7wgnmacf9wvar6gfj09n9n7d"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.16.0"; sha256="14784178jlf7sddm9vkqvhpjsy4ppblacassna7bsx46xszx53jn"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.14.0"; sha256="1lbv1p3pwggn1i75w4xkf4nfd4ff1fd9qkm65l7g7d98jinwa1wm"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.14.0"; sha256="0hvsang8qlddd8andinl6p5ip823bg08c146p72glfa87bkf8xh6"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.36.0"; sha256="0lqv04hjc2z3qnq4ijd9iym3mlbvxrhrxpaxdhs6w9dd32b8n8mh"; depends=[GenomicRanges]; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.14.0"; sha256="0wax0bplaibb27cvvqab3lpjb7qzy66dc5fs10mxadcbihl48fsb"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; + Omixer = derive2 { name="Omixer"; version="1.8.0"; sha256="080x94lhqml1fwvs0n8j6kvy2v2x3ij64960lhwjf8k1r8vyq4d5"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.5.25"; sha256="1a0d4vf8i45h1fifswx9lhk6fk0z8sxfnav35psz9kvmxxab9698"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringr tibble tidyr tidyselect withr xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.26.0"; sha256="01qrlifbhfnq5liyiqa05pwjcr659v2i32ns2g6hc2crcf7nf5zz"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="4.0.0"; sha256="1zxzl78l1vs1s4njs99mb5f97sxgffh6nycy0b5yhzw317kj1rdn"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.10.0"; sha256="1jr0yshp4qy1869kv2cncy77kqnb2vi3m4cdh0v79w062qxbi7p7"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.70.0"; sha256="06vl8miwzwl2i0ik3p50fs9z65d65bd793z5kvnn80dk2zbnj6qk"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.26.0"; sha256="1hawn8pp63kal5ml0sm3h1j1wnkq02z64sliyaf6apv7vl60ja9g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.40.0"; sha256="11l1xqwbqs129vxd6lxdaizpp6j08spyh6799rv5wqmlymap1ykw"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.28.0"; sha256="0454f9yc0jmg3mcq9264wb5v2n8n0kaf801hlvsiy1xa3baj3h29"; depends=[BiocParallel cluster EBSeq testthat]; }; + PAA = derive2 { name="PAA"; version="1.32.0"; sha256="1zyms2s98bhjjl8bx86yznn87k8sv7dgadpgfall279q7av3vkgb"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.40.0"; sha256="1irx2cv9k0wcx4aq1liyka9badgf4f20rxis7y4jz9wd9hhakilx"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.14.0"; sha256="1mpz4afz6mx7a696pylzlar2jspkflkp15g4kzvk1sjkmwb6k9pj"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.44.0"; sha256="0ma44mv7v0bcdzgzg575ky8h1mdffk426r18gjcg3v5xbjjargw5"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.14.0"; sha256="0mbqw5kffv7jfz37ydfmbwgcxf7baxghsbs163fpi9qksn37d1v7"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.26.0"; sha256="0ya9s06dxrwzw0d4r08h5nddklyw3qbgwffbinwy84vgipkki0cz"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.10.0"; sha256="1r32ajjmrhlwl0ylwavlfzph6m01mq3y7r87x8mbkmqw9ld1y2fd"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.6.0"; sha256="1s6j4j4s5vq2zfiz0axzmxcvfypwhn6wr1f0pm6f6kfaymkpp1xb"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.34.0"; sha256="1yp4nw6agcrcy0ib4c293hd4j2waw5x7zjn2x175n3dq02hplpvq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PERFect = derive2 { name="PERFect"; version="1.12.0"; sha256="1l9p2cs8hypihrl57bsyszzk9kwlp03pl3pskhgwsn5vzjmfgymg"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; + PFP = derive2 { name="PFP"; version="1.6.0"; sha256="06fg96phldv4rlkq4zrmvkkc19r57f7c9vrq51g8p54byj58rjbp"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; + PICS = derive2 { name="PICS"; version="2.42.0"; sha256="0snl32fk5vglww4rh3nmai86kxc55qwnhvbad2gqk821xh1idl70"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.42.0"; sha256="1j4jx9lr1kia7880xvv87mv72ish490sn4kirkpp4jzcz3n99bh6"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.58.0"; sha256="1v30v0i3awq8vfid77hgcwxallq0swarvrsszs1jff9wq9gnr6vi"; depends=[Biobase LPE MASS]; }; + POMA = derive2 { name="POMA"; version="1.8.0"; sha256="0ll61s9ylymsha2mvys36hr3ximx91ldbzb4k34gmy8rxjgb2ima"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.6.0"; sha256="08cahszklxj42cpaklzil7q3jkmrigsqkbbklfkq74q8sa65ry3j"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.24.2"; sha256="16nkqn6d8pakkbl3r2rvxzfjcsx5calyjcxnysy3g84lflv4lfid"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.44.0"; sha256="1j2v7h7xajdlmbvi397qrn61w6zvrckql7hzzk0bhly3lcfsr5ij"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.50.0"; sha256="0981l0yssnfjlxdqjv4r0a7a4gp01v1zqrpk9c19c1hpklzjzn9s"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.30.0"; sha256="1fx832vinc5rfb52g2f62480sga3lh6hslz19v6whjadrqaxi1kv"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.20.0"; sha256="1arz8wq4k3dzsqzq39g95pyl934h3kdyqh2hahjpb2qpz0dnr1mk"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.74.0"; sha256="1vnj82yhc949hbn6crbqq6jk919b7fc43vrr4bbqls0czdajs42l"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.32.0"; sha256="1rx7p8k6rwdx5lclz85h5qabkl0lvjprk6cx8xaaabg2g1i4d99y"; depends=[Biobase MASS]; }; + PSMatch = derive2 { name="PSMatch"; version="1.2.0"; sha256="03nkkx0chmz4ms9zkhjdjylzk4i3s1r51h955nn2qr236vi5h60p"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.34.0"; sha256="02rjdq4sbbb3w91p2k8bbbwwgb4caipbkj338lx0alc58ax0c0fh"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanViz = derive2 { name="PanViz"; version="1.0.0"; sha256="19av4p7v215yb8scp6v161j1wj9ib98yxw7xkrryn7ad3j361a92"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; + PanomiR = derive2 { name="PanomiR"; version="1.2.0"; sha256="02kmlv258cvg7zqzb1wh48zxgbhpxqf3avfhlg2w0cf5kwmbxb2w"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.28.0"; sha256="1psnkgi565gyv7jskpfjcsyvnlgarmqpa1ywzg9z6cfplfly550c"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.38.0"; sha256="02371m21xh684hcrbhfdk9hg1jgcdgrnbn1h6vv7avaz6rc07iki"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.24.0"; sha256="17d3csjf8xxl3xq8kqyzkjlcd1xyq1wx5rln45nmancd3qsff9l4"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.8.0"; sha256="06n9clc7bngw1fmbl0n25765svvc1r3n923ai50r9xpc75wygh0a"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.16.0"; sha256="02i29jinawssqlb33wvj0h9w6cfcvamlyfxdynd38jmwx23l15l5"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.6.0"; sha256="1gm1zr532vzz605sah2b2qmp95mnh68lqyp0kjb8l4qjz06vgawd"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="3.2.0"; sha256="1wd6s9qsfhgc7krkhq26bmdgrcqz8w7nnl580hy0b0lqwnfrd86a"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.34.0"; sha256="1gjji1l1a39bbmq0dm533f9y10yg455zh8syz4ymp21ipshmh8x9"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.6.0"; sha256="0y6nay90b50b0cgg532vqk4cfdgvhcw4ianqxh3l4y8gz85136dz"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.8.0"; sha256="1g8ia2f1di5qd7rkgirgpzwmhxx1j2pmid8cqqpb3gmqv39dj5r7"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.12.2"; sha256="007zr6fgrdrjg3g1zypcvh3966xzfwz4aghhivkcslyvl25smygv"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; + Pi = derive2 { name="Pi"; version="2.10.0"; sha256="09rv07k7sj6l5h00wm5z7hsq1nr084i4xdpy6sgc1kb7hksihcs0"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.24.0"; sha256="0djknlcwhwfswi3wvy9zmi11ldv97zfq2p5rh5xv3ma4zfhrbh9d"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.10.0"; sha256="0sq2x68bcslzldrh367hh9r1vrnk56mkc6iqiq3zy7rzgxhjigpl"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoDCall = derive2 { name="PoDCall"; version="1.6.0"; sha256="1x368wc96nn4k17kbbwavriqfp6qywxivdas6sp069c053xkjxrq"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; + PrInCE = derive2 { name="PrInCE"; version="1.14.0"; sha256="07q3x6rx3raz187akwfdd01x57hxbf6njbrydnl9r6a8q0b0gb0b"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + Prostar = derive2 { name="Prostar"; version="1.30.2"; sha256="17aljj7r41cmgvf2xfvjglglf4zrcajdm0zm2vifvlmkr2bs95pi"; depends=[DAPAR DAPARdata data_table future ggplot2 gplots highcharter htmlwidgets later promises rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes tibble vioplot webshot]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.30.0"; sha256="1k5pg0zbhz9mjsl5i3j33p7qv2adax2lf7yqv6qz229fxxaxs5li"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.4.0"; sha256="0df39hwg5kmc900b57dxw76mz11a7h4nb9kq1z1wl6ampx27w0ks"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.16.0"; sha256="00hivafxnk9kcji6k4r0ajrdlnlmpmaij6jqiaj9ghfcdqza2fjz"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + PureCN = derive2 { name="PureCN"; version="2.4.0"; sha256="0x69n8v5fadx3my9s68j9wadicd8q07gmh40drrcd99n8xfrp41b"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.32.0"; sha256="12j3piy8c0d3vd6kqn0i65g96xj8x8p5px4rprw2mw9jnaydavwj"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.34.0"; sha256="1qv3vmc6i7r35pqhi45hmvg8h7v3bl82lv7yifs59k250zsdls59"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.8.0"; sha256="00f2j2kmvap9h7xxayy83g91zm41jd52vi9iyxhfk1lvmzpipa7h"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; + QSutils = derive2 { name="QSutils"; version="1.16.0"; sha256="09zfjc1m8h7v18mccp3krk732ls3z64q21179r0dy4snb0xighln"; depends=[ape BiocGenerics Biostrings psych]; }; + QUBIC = derive2 { name="QUBIC"; version="1.26.0"; sha256="0cq98y7gl1ifx45j0ilwf70h873hwfdv3y4n2yxalk1rqbvwg5dg"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.12.0"; sha256="1mqf7cbm9x0jvz52cmks6kyv8i3ccc80m5pn7z4mrmip782ddjav"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.30.0"; sha256="19r8h639iyc32p2yxz2j89igwl2286jv08hw5a05k4532qdkygj5"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.38.0"; sha256="1pp94368aj5wx0zcnbbm6zrxrfhixmbcdzpj2lka3blvq5j7sncj"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.32.0"; sha256="1ij17xccnz4m9wvvrwql4ha790qj0x155286rkr9ybwww0ipr20i"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.30.0"; sha256="0xhb514qnxswsv58ycsfibi4yxbwfpxn6yp5mv891y7sdb6hkniz"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.48.0"; sha256="1xx4ssqw5x9y87hmb9h2xkqyvxl41nqfkarwzdlgfd3sqni808s9"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.26.0"; sha256="13zscbrarxma3p49yfgvpj4rrycra4cnnlcxw8032g4y5v75jzpd"; depends=[Biostrings]; }; + RAREsim = derive2 { name="RAREsim"; version="1.2.0"; sha256="1r4am6k9q922wxxjdq84lbhvxql6padrgh811s73r99lfsxwfxg9"; depends=[nloptr]; }; + RBGL = derive2 { name="RBGL"; version="1.74.0"; sha256="0dccxsynfnhjzjk22hr5kg068zbg33g6kyhlhlhqh78582181j9m"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.30.0"; sha256="01842vqv2zl3n5y3xhzr07kclm5rhjv3i0cb315kzssbvrvgsfp2"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.58.0"; sha256="11sfsbbkz482m8jiz21czmhp2ha06ii9h1b6ww8gaka9y0pm8pgc"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.24.0"; sha256="0wja7m3b3zr0m8nwcq5m5appsr09jdwkvvvxzh2r5mhksn0abs6p"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.44.0"; sha256="0v233p8lfgscqsi9d5sszbqhihqd44gs1rnvf8g8nh3090rc8asn"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.14.0"; sha256="1iaxkj8cm0f7vx2ypicls016kwfkqvarr3xway0n3brvzirmcv9m"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCSL = derive2 { name="RCSL"; version="1.6.0"; sha256="0j2kcdkjpdlqg1ix0v2yq75w7phmhlrzzbaj3zwrljwzdr70wvh1"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; + RCX = derive2 { name="RCX"; version="1.2.0"; sha256="14fcipa1w7xpmvnq67lsk0xq03s9rc747jpx4w76xfwc1jy75799"; depends=[igraph jsonlite plyr]; }; + RCy3 = derive2 { name="RCy3"; version="2.18.0"; sha256="09rikpi8bkh3p7vpwip865vyw9gdr1n28y5azid6ja1wav315s3n"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.20.0"; sha256="0bkjyzphxn62hfmz2hpk9lbxikgv0gp56smss79abi3yx0841dpg"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.48.0"; sha256="1i9ma3pi9b425jrgv0pry03id9dc3k0yjr7spfnvbz4xz8ifgllm"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.16.0"; sha256="18a201k2zdin3k5g5vpwlq8n6z2h6z7849zcz8rf3yzlfmbs2mx1"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.44.0"; sha256="13r04w1alpjs11kfm6cfqa4rf54z6yhhn8q754jxn8v2ivp7cwgy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.22.0"; sha256="1rqkvm1s7wb2cbkr8c8dxb8qaydspz83q03xdfgc656jd7431i70"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RESOLVE = derive2 { name="RESOLVE"; version="1.0.0"; sha256="1r91nmzw7ll22qxazaagxi0zv8l5kh6rf54alfy9nqx5w10ni78y"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 cluster data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa NMF nnls reshape2]; }; + RGMQL = derive2 { name="RGMQL"; version="1.18.0"; sha256="1yl0rpah721z0h8r5bsqhrj4nmyqn23sfn3zld59wc9pn8azsqsv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.32.0"; sha256="1psrm5qd7kk1h01rb73mf0zi159lpd59awfhslkxaq8b1ifck7ny"; depends=[BiocGenerics]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.26.0"; sha256="0yvjp8hzbiivmkb2bbwkgznmkgwxr31sr76hjh25cqgfwgj0rrzr"; depends=[digest graph rjson whisker]; }; + RIPAT = derive2 { name="RIPAT"; version="1.8.0"; sha256="0z0g9k09g4g0i2h0lq2f651q0336q6x3rzli6xh7a4pj4gqcbnsw"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; + RITAN = derive2 { name="RITAN"; version="1.22.0"; sha256="0ha5qn1l4518ks8bghsb4lmj1ch3ak4gwq8m29xq5wcyg932np7m"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.22.0"; sha256="0ycb97npqrhavm6i8idhdaah3h4i7m73zmqnlki2spg49j6qkh1p"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.26.0"; sha256="0hwwkdzzh118vw4k3pxxmd7yzxdbjwp5z0vzss1pvmkgidf4sy94"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.22.0"; sha256="13k01nclhl82kjyh16r5g2xx6f6inp5m7fkkd45pvahalx1cq0lm"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.60.0"; sha256="1kqxvrjfqf0l98nlj5fx36gh3n5gnxsks0gxpg9b5civjnmaxilv"; depends=[MASS]; }; + RLSeq = derive2 { name="RLSeq"; version="1.4.1"; sha256="12dbvvh7vg9bzyj64jans0p165lz2ca26d9ilg3nka4qii37q23m"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.6.0"; sha256="0hh84631r6rm5sxpp40v8blrf142rlm4sfyww933yw9khvyxvbnc"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.8.0"; sha256="1zlv2vyarj0przwdn39iybk9fkghqbiic5y24i603jzajv9hqxz0"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.10.0"; sha256="0zj6ham16bjycdh1qids0pfq6xdbp8y1hdjm966ba6cwl9xxwl5d"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.38.0"; sha256="1f8jiljxacqjj0vf2v01fclhl3i0w7xddxcs6ajxzlmmpqs19b8a"; depends=[]; }; + RNASeqR = derive2 { name="RNASeqR"; version="1.15.1"; sha256="0rkn98mp6d9lzm82r37mixfq7vka71c9nwkzkixajpsba2915sh6"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.18.0"; sha256="1zf5gg25lyn4z8yq8mmysxzpm7jkpspawyv7siwzb0m80h59rpiy"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.46.0"; sha256="18yhkkwq4gvwvph8pz53cl7id644vv1n2d3jngwrfk918jay5d0s"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.12.0"; sha256="0xhz2fz0lw2yw14cw8fcnghk9y9q0v75b4bkf7bg5v0jrcgg6bc4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.12.0"; sha256="1ckd5n79psinpvw45ysnkw8n3r8g0njbd9f1a555dwl29vb7ay83"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.12.0"; sha256="08nkscr9164gpdyp3g3ypm7l7gn5lj034nj7hwmgjp4qihsnfliy"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.12.0"; sha256="14zkhq86sz7sj9nacfcsqb9g5w3nx9318aaqfqhkckk17nvrzhcg"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.12.0"; sha256="130hbqhsvqm0sb39051b7s2asmvxv3pij0a5d03g7v828cbc96fh"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + ROC = derive2 { name="ROC"; version="1.74.0"; sha256="00pw6xmxjzprbx8wskq6gbyqkfak764vic5yxrzs6wpram352vmv"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.10.0"; sha256="0inil870ingad37gv6bc0hakizwb7lpg8s9disz888314f3xqmwz"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.10.0"; sha256="09jx7m25y7c0ihsv9a6cj002395kg3whrvzphgwbcipwdly1ag8f"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.26.0"; sha256="1wirblji4ckiwrvnh14cfwc9cjypazbaqr00ka5ndyz39cc31shn"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.26.0"; sha256="0x0icx2r3vdn2a3615hfaqgp95p0d4cwz64231hqg1xji63b0q0s"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.54.0"; sha256="1981822904nc6slkqs8mhcm82ys3s8l0yjcbg0n7ki7pibfyd87g"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.10.0"; sha256="07d5skr8cp0hyjbs7whw4h8scrf2w4hyn0wzj3khqdss53zmmr2m"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.38.0"; sha256="1fng44mhqxjq4xczw7hj32v09l1dl58azfd8cgc9jg1j2d5whjs6"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.38.0"; sha256="1zby1b7zic28x32m7w39lnp4cc1ksip08k5xq30wa7radlafagfn"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.18.0"; sha256="0fjcwm3fw13yv3vdawwdbmbqws3n47f5s10rcvllm3wrbb1zrwb6"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.50.0"; sha256="1jd5rknlbhdi650xg1isqxmgvi797c4jimn53x4nzaq88b8rabsc"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.28.0"; sha256="1h7x1hb7lnjaq842k72l76j7l4d9130vfh8flvsjvzyc3l98cywq"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.28.0"; sha256="0w02191nj94wapywy43r33f04ck92mww49lg1gik38pbafaahv68"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.22.1"; sha256="0ga96f1qmbq5a8nxb94b60ml2fwynnz590xjbzcx1g5vhrblkj42"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.22.0"; sha256="0m3h0rkix48pr4jywvm0h1pbqlv62gdzq3safwgqpgb7m0pg6d08"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.22.0"; sha256="00naywzamklldsvipyg3q2c16s84y8cw1bngdw2l1d8yra4qpq9r"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.44.1"; sha256="0g31606wsd8z2rpriad2fk9v8n27vp6gyk02nmq46s9c0jpf3s7p"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.32.0"; sha256="1qb4k7pm8w86d2p9q2r4n63iyi34wdib5x9rsjx4vhcxrnzyyygm"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.30.0"; sha256="1g4krs3d7sr56chapaxxkr4bxyays8lv6kkdds8b3q89acwzq66l"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.32.0"; sha256="0cn38bdc72qw5g9qwwpaql72684501nrk562xpvymw5nkgw28v6i"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.20.0"; sha256="0cm8j9j1s77lklgadgbb1i774l2b2s62dsjg8y1i1w4mnb9a1sn9"; depends=[GENLIB gRain kinship2 snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="2.2.0"; sha256="1n11dkbqrlxgv6asl0qdd9d4xwbbciyh6ag5dhgkzv7fyp1kxd12"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.22.0"; sha256="0gclfng9rhw32r3z22nc3bna87z45jq83y5czd3865g6lwvpp04l"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.18.0"; sha256="0s13jgk4si3a2bnqavk2n420kh3iggap7kbrjfawadnjdj2ic34c"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.24.0"; sha256="1dyjm4wwjq8aqx7sbr4jqxjw1d55w2jzdl6f8cxslc63q2sjnpa3"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.26.0"; sha256="1bkww57sv3jim07cawhfkm856p3ylyv0a89k7mr3lrnxfgxgnll9"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.66.0"; sha256="06ddf30kpdmv7zs4n4q0jnnk0fsp0vb5263haw9bky45v56v4ghl"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.6.0"; sha256="1n6cl79lvd4h249mvm6bzgcdgdpnw2683imlqxi74wd5aviw5shw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.38.0"; sha256="1kbpqhidj2bwhp9gxqx2qjaby6fc2dfrnnyjkciswgxckis6h2pc"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.4.0"; sha256="05cczwkhv7kfnhlr0qznk6vdjncaj907895923f8mwx4j4cy5gcz"; depends=[magrittr Rsamtools]; }; + Rbwa = derive2 { name="Rbwa"; version="1.2.0"; sha256="0s6a4miawnsicysq9g8k0c5aycrq5bnx8pq07hsd86pbbmw57nhx"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.18.2"; sha256="02lz2m2zhwy1dvmjvlss6qg0dh574qhnvn7al3wx7ck1hkz0dgi2"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; + Rcpi = derive2 { name="Rcpi"; version="1.34.0"; sha256="0y64c3z7g8vsziphq39wypcncd3alvakd3ndwv7fgijpxf1rq4hf"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; + Rcwl = derive2 { name="Rcwl"; version="1.14.0"; sha256="17g2k748n4p7v7xvw5lrl5sw31w363hiqj8iaq6mclil7pyi90d7"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.14.0"; sha256="0b5v4x4v0ygkbfc8f8310bw2q8zsmqf9f8f2rynqmd5r7r5c8518"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.58.0"; sha256="0109isvqjf18y5nryw98kvc4m5jq63jvlxlvdm7sqqikcq6irraj"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.44.0"; sha256="1r4dzwnqv6a4zy5q9l3axqq23sbk9pjfb2y3fmwxjvdwq6c1qnp0"; depends=[rJava Rsamtools seqbias]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.6.0"; sha256="0dwzamd82n598bj80cjp49mzjdfwrf4ajkb42fcp67j1w6zh6g73"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.12.0"; sha256="09sd33dji4bz6ym9hf1gpiamqm0cz45120p2k9rq70pwvra1ipcn"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.6.0"; sha256="0by0k2gj48y3ng0ckn46g2nfxn4jkh6qdd49w07bqvx8bmap1k3m"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.42.0"; sha256="06994hk9nrzlgz8sby61656rdbf1r954v71djl1i7141dgw5rif2"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.44.0"; sha256="1ss2mz31v2hps9hs34iz6cswynizw2qy64jzy72fgk4zi7a37wkv"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="2.2.0"; sha256="0icnd1cbmi410grzy0gxn7d8wp7avxffvzr8hk4qj6n2j46pd1y0"; depends=[igraph]; }; + RedisParam = derive2 { name="RedisParam"; version="1.0.0"; sha256="0jlkgkgfi7y5mmsqphp18qg1vnmrryq6xl6hdmafnh1skpn01mzn"; depends=[BiocParallel futile_logger redux withr]; }; + RefPlus = derive2 { name="RefPlus"; version="1.68.0"; sha256="1gi3z78g5z85sawqc4g056m8wgnbddyc0x9pdr0kjxr80kmm8jm3"; depends=[affy affyPLM Biobase preprocessCore]; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.8.0"; sha256="0pjscj7zsd7kcmv23pndwasy4nf80ji8ynprl1xv1gxy0wbazxd4"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; + RepViz = derive2 { name="RepViz"; version="1.14.0"; sha256="0pbnca9srv6r5h5bin80xx95b9vx25y2kgfznydl6h6dp8vrxjdm"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.44.0"; sha256="148m0pnp40bc8hnq72gxivyhylnzjwh5bwpsv6yvjjc5d9b4h003"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.38.0"; sha256="1nrgnb002qv0yzmrvg59i9b5wzxda0fdkrmdi6vr15g0g7j3yry0"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.8.0"; sha256="0zqifr1zhsfhrkjlp0ajqiqc9f96yz8zr13yhl19lvw30pwg9rj9"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.8.0"; sha256="0vc03bch0j2zv468sb7prnc4ppxj45c21sgzkxx22gx019889qf2"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + RgnTX = derive2 { name="RgnTX"; version="1.0.0"; sha256="1a70hwc1268qf0z2wyan1zgkgjc1z4fgbb8xlrbmv8nq0hblxfs7"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.42.0"; sha256="0blymdax10zzg2lpj4hgvyh9c01b1qaivrc0gx95swji37zkqnwm"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.20.0"; sha256="0zxgpc2krfwqzm8c05cdlfs3dyyf5ll43ff9mw8xzj89wcmlcfx7"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.14.0"; sha256="19dc9fadgl55icqc5xv834kigicxxr6cny83247jjbgf5zp16piv"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="2.0.0"; sha256="1ri76wwv44hgxji2bmlqi6v8gbvhr72q0d6nlgpfgfwb9sgvz62h"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.4.0"; sha256="0656cgcb5k2ky3850pf7il61dr5nb3i2cdk93x3xllcacp64h4mm"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.6.0"; sha256="16i271hdibwv29883wxrzjhcilri4ydnyq5znl0dcqj2fbfr3y46"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.28.0"; sha256="0wmmpcabi1ngwmvfhxkp44kj1wvzyrcckkrzpjlzcq016lr67iwn"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.62.0"; sha256="0l9lpf6a2cj88hm75f8qy7h13lvwc1ldykvqkd0zxzdwx1s64gzr"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.40.0"; sha256="1id6xgm74zj1h1kig2apg119ms8n6z9pnjfwyxlbkdzyyn040rl0"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.54.0"; sha256="00ys66bbj8c61dr23zj1r0gn5lkmih15b2cbcvxxllzyy9smcdpa"; depends=[Biobase e1071 kernlab pamr]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.16.0"; sha256="0x8s2whkg9x3r1hk973zwkaby2d616cvfzkg3qp77nqn0sip91r8"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.16.0"; sha256="1cjzdwfjcb4wqwm5kwzyvf7f6c3glxjvhi4w9f26n1g9ifli9725"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.8.0"; sha256="0v120ckw1b4j3fm80amm7qihrrczh3s291n2snrpai34xhpfbrva"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; + RolDE = derive2 { name="RolDE"; version="1.2.0"; sha256="0agxqynb58ky0z0dzhz3j7c2n1yz4njwk651jjikb9z3c4k67kiv"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; + Rqc = derive2 { name="Rqc"; version="1.32.0"; sha256="02k64pjd1dlz5sksdbkbii9z4ihf1833ws7wwj81w3757zzabx0x"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.14.0"; sha256="0wd4hsn19msz0fkwfq7gvi97vlfpsbzzw3rjj4b6z7s5a83zir2z"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.12.2"; sha256="1gvd8vmglvzc3bixqxrm4k7yikl2as5l4x6bvvvnwsgx2i7vz7dm"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.8.0"; sha256="0n2k1pqba4fnf0mpkxywd93yzv9dk37c134pna3f25mgzgd84qj3"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.60.0"; sha256="0pkc4xsqqfdvszbb0xwx3hbxl1f7kcx3vm9bhjd7zkwls1jvv2n8"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.36.1"; sha256="16lssnmhy3klqp4sw1328f38cixkjh9317gdyikcrmsbcwg2ak6v"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="1.12.0"; sha256="1dlkljzm0ji3hkck3w5p69x5ld1pw2yaz3j3v34az1v9xdkzq1j1"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; + SANTA = derive2 { name="SANTA"; version="2.34.0"; sha256="1i99s33id75srjr0x3yfz1gdyxw6766pr9w4afs8varfq8gxyc48"; depends=[igraph Matrix]; }; + SBGNview = derive2 { name="SBGNview"; version="1.12.0"; sha256="0644hd9m4d1s9y000yh831pwyx7q1dzr69fjqf15bby78xkn70yn"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.94.0"; sha256="1x7p27abv9yc9mxbnprlwh5ph50jkycmlb90qib0mj361g4sr72d"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.26.0"; sha256="0f1k27czkccgpgrmlr6bk5ajcbfr99iv9dyjxrmd0l86dm1afab9"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.40.0"; sha256="1hrfwkn1gd1r2clk09a2i4sqc92bmw1c7h5ddrdnlcpgfdlsdnxp"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.12.0"; sha256="0hs065lsfwjdz8b6kic1gjpak8xd5p08k957f9zsz32shp0gp976"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCATE = derive2 { name="SCATE"; version="1.8.0"; sha256="1zxliw0q979jps5lrmwks5m39qjd827jbvax1ndkd8p6lp1pcm2h"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; + SCArray = derive2 { name="SCArray"; version="1.6.0"; sha256="0crh2ddh87j5qbxnslr1f94nsf24rzqz61ng6v3g8zpsldkrw09b"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.16.0"; sha256="1lan5anf451dmb19sra79d4w2qi9kk7xw3zijswlbhfnd4fv9kgz"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.8.0"; sha256="02g7hzgg68y8ckwhdwlp86574x0ffjp86nwg11whyira80v5y97y"; depends=[BiocParallel cluster clusterCrit coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; + SCOPE = derive2 { name="SCOPE"; version="1.10.0"; sha256="1z9v27l8bs7gkbgp1kd1q9nyq77x46anc0x0c1as0m04qq7c5xbj"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.20.0"; sha256="0zv4pf650crwliby34cjv7kxkrbqhc7xvz15n39hz5d0fk7ablgd"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.18.0"; sha256="0i9i9w24qb66rbvkpjn2fin8x0mxd7g767i4ly0s75v9kbbp3ca6"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.30.0"; sha256="0b5dcx9djh9d0zi12bnzq81jjzcqam1i59a05d3p917gf0n058ms"; depends=[Biostrings rJava]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.18.0"; sha256="1vm4zy6a0hff6j6ysbnrxa51irc4mh98rxs2f253f50rwsbasxlv"; depends=[corpcor limma]; }; + SEtools = derive2 { name="SEtools"; version="1.12.0"; sha256="0q47pw3yvk13ld9zwpc6lihf9y4z2dq81y81zyz5b8mxnlkhwixa"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; + SGSeq = derive2 { name="SGSeq"; version="1.32.0"; sha256="03ddz0mpgqqb52r7wa46bcr1ybf40126pg0n0n0pv6fnbq0ifwyc"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="2.2.0"; sha256="1fx355rwaqg057f6qyynmnhqvf74c818irfaii6y3s46g455nvwk"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.28.0"; sha256="1zjwph09shvjzzhsnh8mfzqypj2s66r6irq1bms2zw1mqpjcb2fx"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.68.0"; sha256="0vrz9cmzjy20h02gsi79svrh9ffrxkkzbnfa0azcgycz6h5ywggs"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.30.0"; sha256="1zwmwblzr9r66a5d9xrjb43id9fl5m4fbzgn04yx9bmvxywa4xfw"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.16.0"; sha256="18wwn76kd826jgqqdrdmsjq5m6mfn3kp3w2h2p5qwb4w5zqdw2ir"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.24.0"; sha256="1v5ias6m7p7bww4kslp61nzd6aqcgwwqjb9sxi0arizl5ddwnn0j"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.28.0"; sha256="08ks8nlc200yz8r3qr45g03k4bpi4dfvdd7sin1yadazfil1s6kr"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.64.0"; sha256="0s3gs5q5h4vrjaqwdr6gjfsl1pj286sim2cx9abvjj9hpcjk08vx"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.14.1"; sha256="1scmpagh86s9f8qsa89vi8l221asbygpv4mkg7bsv5943aqbknpm"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.62.0"; sha256="152lrwn5rr9vlkgj22sgzg0winnhzvvlg6nvzd717bjngjjfj8nq"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.26.0"; sha256="0jkxchbwjjid2r8z1dipjp6rzmj0qs9afrvd4jamvx1gg9xwr6b3"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.38.0"; sha256="1hbcibv4yhk7hw4w41nq85szk41vrfyfv7cv4qzn0xhv3cacivj1"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.32.0"; sha256="00b45rfsandmp6bc458lz7w3vkgc0vsr8wd7xbjq8rnzxpj3bzdj"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.24.0"; sha256="1afz3d8vbldd5q38nsqwblap4rgxhjqq6yixh5vgk0qbcmhhhb8g"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.28.0"; sha256="0kn0ini79lp2c3mav1hf54jg3lw2ggdbi03nrxxp9iinzs83q9d2"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.6.0"; sha256="04lkkhq3im7cyi0ibm8i53092hjlwaz0v32chp487pwdpz87c650"; depends=[Matrix mgcv VGAM]; }; + SPEM = derive2 { name="SPEM"; version="1.38.0"; sha256="1763qcs36vsvbd7rv3s40lgq6yq7b2dcjadgcqmh081hc4zz63cb"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.50.0"; sha256="1zrjjlji7whpvgpznslswxs6nj29n40x02z0v62j1x7r0y4rkn7b"; depends=[KEGGgraph]; }; + SPIAT = derive2 { name="SPIAT"; version="1.0.2"; sha256="1lajmcg75nypl3ms1dsjxj5fiwi0ncc4405makkczm0gs6d06qch"; depends=[alphahull apcluster ComplexHeatmap dbscan dittoSeq dplyr elsa ggplot2 gridExtra gtools mmand plotly pracma RANN raster reshape2 rlang Rtsne sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble umap vroom xROI]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.24.0"; sha256="01rq0x3v5byqwj0mlxv207hkf2zhadyq28qnr49mx25xanb714ah"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.20.0"; sha256="0wlm7xbnz50avlyx0gpxqbwsascwg777sc39h01a3qxbfz91ia4w"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; + SPOTlight = derive2 { name="SPOTlight"; version="1.2.0"; sha256="03zvbhr1k4zwnzkza99295fp7j1pihjfz8gs1v0kgksj340nwfvf"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.8.0"; sha256="1rhvxqldzv7if8r8x7xnszb68r6qcbysazddbbil0drvi1dxsl0z"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.12.0"; sha256="06sppcwx5xm1z2dyqfxl9ml3wpyblvcvy0jsc4dqyw5d8np87m5d"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.48.0"; sha256="174gbzjjvyz0m4ldr0blg82xd7r3av7frzw199ignhflyxy6brsx"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.60.0"; sha256="1j88gk2dr2anh61acvdyqf2gvy3d1dzdssfj1fwpwppy2p0gy0xr"; depends=[GEOquery graph RCurl RSQLite]; }; + STAN = derive2 { name="STAN"; version="2.26.0"; sha256="0lmgplv4fffcq6vp5083hz0y1di7m5zm9dpbkcbm2aq85idyswyr"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.34.0"; sha256="1l9xzkd1hwiah7bwm23clwc62gs1jks9hgkympwyr5in33fy6z61"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.10.0"; sha256="1md79vx4270wgh07g3m1mypdki1b9d4a558zxplcalwppqh0dsmp"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.22.0"; sha256="0cyyjly4wpzjyf130shcpy9q734l32wk3a3c2wymbvxxlphk9353"; depends=[Biobase BiocParallel cluster matrixStats]; }; + STdeconvolve = derive2 { name="STdeconvolve"; version="1.2.0"; sha256="1f5b3vnswpj6sja05g9lnx3lygzkh162kynja0xfjd0rksp4n0h5"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; + SUITOR = derive2 { name="SUITOR"; version="1.0.0"; sha256="0ms36d1ay3w1ynrj6672yhvdv0fsvrlwx6fqrp56f5ibvmh3nchd"; depends=[BiocParallel ggplot2]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.28.0"; sha256="1mab1q9xv0pzm97lpsnvn3hhybqrmy29gcdcdxd4myf6zqg1j0a3"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.52.0"; sha256="1sphi1y61abx428624nrk8srlcp405ssqzzxwrpjrd325gj5ry5q"; depends=[]; }; + Scale4C = derive2 { name="Scale4C"; version="1.20.0"; sha256="1fqzfq782xb378p3f8cyd2pd81iwpw5vf9ssq9349vwz1qzycm8a"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.6.0"; sha256="0lxr6z9zdrgvm06inc1d8gl2agqmbjvgs8f5ryn5x68hqlnchnl1"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.18.0"; sha256="09jhbvqrwkwp0lg8ixxja9hg88virvpj7bglcmws4z6ch98g42cy"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + ScreenR = derive2 { name="ScreenR"; version="1.0.0"; sha256="1907v37z3lrqmlghx4kja5pfii1hbifdxka32yqqrnb5zzw4lgxz"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; + SemDist = derive2 { name="SemDist"; version="1.32.0"; sha256="1w8jbzz5b9ggc696hbj7vy4n6j2h047raw3x9k6y3vf7b4g83nl6"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.38.0"; sha256="12q4n2whcnp011xqlb6hfagk5d6yl24w5i68iz3j7m9cbcxwv6cn"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.38.0"; sha256="1d88glq8k5bv76s3iq39s5vzzzpcg61r5rfbgw7kdcawing485fq"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.8.0"; sha256="0j515d63xmy1p7d7f8cbg0dz5d61vznsfdw8id8cr32jz7ciz1y4"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.20.0"; sha256="12czsf0nphqqrwh5iyragjmms4srjklqdzv3232p39vm5zy5p6c0"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.36.0"; sha256="0cy85fzrbd646yc774y0v8qiccjhx7f6ysk399zgdfrkq6r458yd"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + SharedObject = derive2 { name="SharedObject"; version="1.12.0"; sha256="11rrnm7kjm6z8j4ga88s4cafcdj83pvhnybp7ns5pn7s2ln8044d"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.56.1"; sha256="1dvnjjc6cwn9wicki3ff3w3zx7i0szj0lnfw4n6lbmipg4ia5bkb"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.30.0"; sha256="0j8m04csgyz3ph6xp1qd5fzsqh83717366f136vgqr6y4msv6jyj"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.36.0"; sha256="1bqj490afai01bkkxkc3pph2vix0hjvkixrndks57bwh94r9k876"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.12.0"; sha256="0bwhpaj1wr67nhljslpvr25yz1y1zxnha2w58g8bmbxxfp8353zc"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.36.0"; sha256="12383rvcq7l2b3ik2gi741d33shrijj09gqpkbvbksj046j90swm"; depends=[Biobase limma mclust Ringo]; }; + SimBu = derive2 { name="SimBu"; version="1.0.0"; sha256="0hnvhl15jp3kdzijczii8z18533as496f17566kqjz9zrkahlldj"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.10.0"; sha256="1mlmlbnqqzxmjmir9lnqnqqb6hmj6wfxhy6wpmf6sv9y2vi2cvjz"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.20.0"; sha256="1y9c9wf3009w4qh03zpsmc0ff0nkzal673a4nql5c11cn55sza2g"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.10.0"; sha256="194gnss397wv3pxh1vf8gfikbz519l8hx3w4fm2hxvjs6q8k2234"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.6.0"; sha256="0dqyx3w8mxhf04xczzdv49lc2jkyamv1vlbdvfj0556y54z45cgg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="2.0.0"; sha256="05rw6l0d4n9m1dd7dp55zfripx036x1riwy83sx3aj5mw4r1awb6"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.34.0"; sha256="0xyh4pwwbpa1bmamqdhp84qhjdc2qsxc43xgknjrrja24d06ji2j"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.36.0"; sha256="0pbbqadais7lvkiz1cj1gpx35l28nb5mm53nmkif4jbd9a2p7lh5"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.12.0"; sha256="1sxjdcc31dl7ljbayrykjr0pq6yywxcysiiclziv62msyk9v4hfx"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.8.0"; sha256="05zsmm8s23wms8arf2hrjx8vzklkq5py9wbqvvnp7989kb2r0bfn"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.14.0"; sha256="07pl9wnn5b1ia71npvcfbm8virydj3fjrpr33gmk081yzvkqr52q"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.8.0"; sha256="0an0wkblfv5bzsvlq7bz01hcc1vaj16l28yk621jpyb4bjva795z"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.8.0"; sha256="1cjrgcn4cbflbfllrfjvn0nzz9xvyflr2pd8zjqgdqxyj7rxpng7"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.0.2"; sha256="0jd4d1djrcqydyy182zd28fffvzkph4krlsk7sk1avk1nj5x2jg2"; depends=[BiocGenerics BiocParallel rjson S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment]; }; + SpeCond = derive2 { name="SpeCond"; version="1.52.0"; sha256="09f5nz799ai7y4ig6y24xnldd37qvv7yd1k258z3s9ckc76cdgd4"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.8.1"; sha256="13vm0szpsac29sys1wmqi9mjxgmascn00vr01wdlg22789hvnzkd"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.14.0"; sha256="1sfbbwl9i0615rapmlycr2c41vlw5yvip1qkkwjq3hmyvj4bs0rd"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.28.0"; sha256="13dbz24g7l25d26piq00cpyll4cf8ss5l1kih7nvp8lrb540h6df"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; + SpliceWiz = derive2 { name="SpliceWiz"; version="1.0.1"; sha256="0sncnp8csvz1vg5b74mqfsf3bmscqjzk1nzd66pz4vf5dm1px3qj"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply IRanges magrittr matrixStats NxtIRFdata ompBAM pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer S4Vectors shiny shinydashboard shinyFiles shinyWidgets SummarizedExperiment XML zlibbioc]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.6.0"; sha256="1l92i96n7pgwrrl4ywwmbpl1al5x3lamn9wrplclkh0l8yx8c033"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.38.0"; sha256="0bqgn2lcmf6n188mj70cczwaps97dghmsililviq9sll91dj1gn8"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + SpotClean = derive2 { name="SpotClean"; version="1.0.1"; sha256="1sxmj1zgx7xf3f29l9qws4sf9k6v1wwh94brawqd6qq1plv79g51"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.24.0"; sha256="02j6l2dmygwmsg1kyb3wpd9qsph5a9wim6gzaljzfa3y2gcv7sx3"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Statial = derive2 { name="Statial"; version="1.0.1"; sha256="1d9crknbxrdpdvmjkm0y2im3har486dlgy5k40njiff7wcm9g4ms"; depends=[BiocParallel concaveman data_table dplyr ggplot2 SingleCellExperiment spatstat_explore spatstat_geom stringr tibble tidyr tidyselect tidyverse]; }; + Streamer = derive2 { name="Streamer"; version="1.44.0"; sha256="14wr5q5dkc5b8hb1zkh03hk7bx51hicshwjvwvy01yxfyi1jkszq"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.14.0"; sha256="0sw8jv3qhfr0r13dpyhml3xrmvf35cnqai20mk123iq160zjq74s"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.13.0"; sha256="11z3acsbaifrxkghd7i8503ki9s1lc6c22880yna6qcfprlzb44g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.14.0"; sha256="192yj32aj012ww5yz3v5x4xplrkr5k8zp9yvmfq86hzn4jwcpdxx"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.16.0"; sha256="1q63aqxrk3s944kld2ji0ghng7yyy8a2d4bwar3wpp1plhkiirrq"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.28.0"; sha256="0897v6x1ki4m7kajnd60yv5qj6xa1293sj572b4dhcnfjvsf9rcn"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.4.0"; sha256="0da94002spi4hv6a42aahdcazq66lf2nf4r6l2zg3hqxw0v6kph9"; depends=[nloptr]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.20.0"; sha256="0bki0cl034zlccqg59dmvr9g57fz6qm57kr28arsl2w1bwjmng8d"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.10.2"; sha256="1cbbhyqyhwdzcsphaqirm2mas8yb6mgs2pmm1x2krfypq200sji1"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.14.0"; sha256="0dq5cy79pdi4ibkyvac315f14xxwahpyznpgzjybksr8xqsa5lsc"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.8.0"; sha256="197cbbi7wnw0j6i8fvl051zhmjl9cgiy45pq7fcjc48vnrv5vw6y"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.10.0"; sha256="0ilpziqzbk4qlka4dmvbkv8dr3w86hpsxm0nlakkps895z8x59sz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.10.0"; sha256="0v4xi6hbzw2x0ipg49xn41fdn6mksfnmsikg9nqvq28m55hkxxmc"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.38.0"; sha256="17kkn8xfkf7g8y51nnzsrgn8v65qlh8a4jysn03phk7pnfrmj7jl"; depends=[baySeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.25.3"; sha256="0daq7093yipry8pp6fj6pj8x1njxs8j6cz7875qkfmzqkbis4vql"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.18.0"; sha256="0vhpamn5ak3b7dr3f4a4z6f7xfsprryjw8nax4f4p3flifim9kmx"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.22.0"; sha256="07zk4c8d9jf8d8f71jbd57c4dhi8g23avwhr2smzi7xqhy12zfp5"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; }; + TEKRABber = derive2 { name="TEKRABber"; version="1.2.0"; sha256="139lblpf5vcpr2mni4x2l5ba4dcixnzbvav8cb90586myrwxkxf3"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; }; + TENxIO = derive2 { name="TENxIO"; version="1.0.0"; sha256="0qva89qpb8zhshq0b77js1m3hc81jpk53yi6vygwfmassg0s7wyz"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TEQC = derive2 { name="TEQC"; version="4.20.0"; sha256="124y6kmwk1cx3k5rjr36lx1ii6fr5xllxniggd59a8k5gdrfizg2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.20.0"; sha256="189h3cc113ikk7ixwrww7ahd20l4dnsnppylphkmxp2p1zhg8ny8"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.36.0"; sha256="05kgkwmh5mcrm0xd81rzicysgknb8wrf71y2llikvma1b9c1g789"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.18.0"; sha256="0ylcr59zxyka3yngf419gzc6jqcg5yrvwsaclvaiz8fcnw0rymmv"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.20.0"; sha256="16b3m09kn6kq8fhl873dg4h00mdnazk7kz5aipqn6nl3n5pxdpb7"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.18.0"; sha256="1spfa75rxfkss8fipyq9bfdm3p71y2kabwcgjpq97q1b5wnfqazd"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.30.0"; sha256="01cpi05y1x9d0i97w1bifi43spa9rkblqpvdx8vvbkzhxbmzkhi8"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.20.0"; sha256="1l06mlz9fsxn552b28japiw4h5h4wjf4jcrqbpcisbrxnnp6480i"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.14.0"; sha256="0i17bikrsh408n75msli2h291iypi2higr4gr1lf76rg98lf5l4i"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.12.0"; sha256="1v9nsbgwp5476ddn3irqiq4cxnpqs49w70l3qbhkm5ydg2ym3cvs"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TPP = derive2 { name="TPP"; version="3.26.0"; sha256="1vgvsf94rqabh6bpl73ml10ka91ky4xd0fk7l74vkxrshv02qk6f"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.14.0"; sha256="1hba901gfm1saqyh8yf18nn4r5s6i1bpxsync0hcsy46lwx7gbwg"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TREG = derive2 { name="TREG"; version="1.2.0"; sha256="1skk9hqc5kyhj2jfy0lwywc3lwf6d15mfz05j57bx9z27gjkbkj4"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; + TRESS = derive2 { name="TRESS"; version="1.4.0"; sha256="0ybyjkcj4xpha5c0afyx7ps13kdl45v9mbgpb75j15f76dw64162"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.30.0"; sha256="0xr3vbs239zs5fgdkka4a51vf3q35w7h811qlix9kg549vabi5ir"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.36.0"; sha256="0aqn1rxzbil9m9mpcdfc0k75s5k6ljy0k4bjrn0zq3492zz4x1qi"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TTMap = derive2 { name="TTMap"; version="1.20.0"; sha256="1vfj2zq4k4fzjnq48pckxkl3bwxwghhfwq8cz14hhwf10f735pq7"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.24.0"; sha256="16lhbbisgxmvp86qfkp0cdd8akjld0ryklw41hi3k4ndimzax6hf"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.27.0"; sha256="0iiv7c3jd1iw7i5nn65370zbvi11s9qn72zig9rw1gz8nvnmdgpq"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.4.0"; sha256="1xx9y5faf5ic14h7cnxpb83nr34mqzz0c846g1z28f3x9d0kg9kz"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; + TargetScore = derive2 { name="TargetScore"; version="1.36.0"; sha256="00z2zv5yhxriagvcz3bwkpr9ii0r9lw4vcf7kjp7x5pjzcc6q6wq"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="2.0.0"; sha256="1m5v2d67w0hi3x1b6nlsq97z197djnr23d6lj9krib1im70cclwy"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.8.0"; sha256="0xmf28h7bsbdr6kds7a99y1y2j52wppxsd1zrhbsipssdhxyir15"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.8.0"; sha256="1jy700y81jjh03y7j66c2m150wl5l31mfd4xpm5jffq4361pwnjj"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.18.0"; sha256="0mkxkmc7pmyqs7nayhhxqpi3a7vwydadzzb6gizliv0w9ic3fznv"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.36.0"; sha256="135l414wk4mh3hbb17djh8pw5lvhl9yf28azc6g95djrahyhgi2g"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.20.0"; sha256="0mn6n5cbpivf1d8n5ili4fnc663xkn90g3jbhdzk1pgi8lkk40fl"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="2.2.0"; sha256="0bi7hf05a2nyd1yqz7sl961s7b5v4lx1p68xiyk91qnxm3ipcxn0"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TraRe = derive2 { name="TraRe"; version="1.5.0"; sha256="06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.6.0"; sha256="02di1ijfv4rfjc1qn6zkg3bkxdc1y96dkbzhl8b4qzj23wzjy9x9"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.6.0"; sha256="130w4vpsmrkg458n3wbhvlchg171gjqybvs2w14bxa608f3fzw03"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.42.0"; sha256="0447jwij6bamx91gm92mjf5xc3pb4jlzsqnyragwr8wy9a3k5w2d"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.10.0"; sha256="0ykcngj7mf1hs6i801ivzncsd99qhmcwm9s3yr8j3qsy2d1nzki6"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.6.0"; sha256="136zgpn1l059i64gj6iappr6nz42z4wbxlg3zpc5npwkqrz3val2"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.20.0"; sha256="0wn0alaqrcakz1rycyvr6ya7cvx28an9haa1azcfcr17ajlhdy2b"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.46.0"; sha256="1dr1nvajgk5y695y2zjzaz57qxcb24zbcv82k953hha6hzmbknyq"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.64.0"; sha256="0f5jm3pgrq3qawd42295n5x6qm5j2kl4xgj2l7jxwy6pd1hlnwmw"; depends=[]; }; + UCell = derive2 { name="UCell"; version="2.2.0"; sha256="1g7lgpcl9p0369q9mlvpax44fk3522y6ks2k112sk057fwnjpjp3"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.8.0"; sha256="19ixkpr20n5gzml3yj4vrxzbvfzwc9n14a5w9zi39hxy6f0fcyp8"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.40.0"; sha256="0yjxa0dv4j369m4hrvx163x0c9f8y68fnsq3zab9k8idfxbim500"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.16.0"; sha256="1z10y0ix10fb4v3yf11vgh9zwbqnczrb7s0jsdn8jpkjq5nijrdy"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.38.0"; sha256="0qhww6sjjdrxbjn2gx886dnk4qr8d20a8gnvcqfg4i5i232icz1f"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.18.0"; sha256="1b9cfyxszdxc7ja6g3nyn7dg4zk45mhn6l9jglhwcl6v1xnc8jay"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.4.0"; sha256="10scvyn6m0aaygg0xy7j5978kfi3rm1yjdmas7b3l1cx58356s9k"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.14.0"; sha256="1zcd7lx9vypym4svpg47lgnmrczgrswzpr5dwcfm6h7c3jwnbnhs"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VDJdive = derive2 { name="VDJdive"; version="1.0.0"; sha256="0qc95d6b3gy4rh90xp1iib88yjhr9v3jgja805an3rqr3c6r7a0m"; depends=[basilisk BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + VERSO = derive2 { name="VERSO"; version="1.8.0"; sha256="1535si34m13w7z2k6ys2xvj73kdwik618iy8swvb44z73vg2xkp8"; depends=[ape Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.10.0"; sha256="1zvva74lwhng0j4k1kya6q07xgrav2f9pzxsdzgm1rrmnqcihdyb"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.60.0"; sha256="148xbymfn3za74z5ml4csj6q875r7hk3iafgcifc797gnw203sl8"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.6.0"; sha256="0y0arfjx5v6b4fc26xyv8ycvy5a2k77dkxgn7if7svjwkk39sgwk"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.44.0"; sha256="08rm27jcx6amawqdh59291r0qzkr5cdhbhm0xbjbd5mvdpp1icl8"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.12.0"; sha256="129a0ya2jq600r0dfx3n70kqchh9a8d23xvc1ym2zlm407hi0bnj"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.34.0"; sha256="110db9gcla796mbll3pin0hv2qp8r6khx0zzqfgzkp4mcyjxi62y"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.40.0"; sha256="181igcmlyx3ddmhml9wqcgw6ffdrqpmg4imd6ipf68c90agdgaz0"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.36.0"; sha256="07lpzzkwx9g2gcyqg33xxshwylmyzgbf2p63ck3kkyqv64ylkhw0"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.14.0"; sha256="0976zqbp3xgxlq0b28r0z7shhmn7nrphhxqv8j3wdk3xxbgy4mzg"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.12.0"; sha256="0y177yjw9bnsnfqnylwv8zhk7fyspx9qv94yw7jmfhxsh7azpafk"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + Voyager = derive2 { name="Voyager"; version="1.0.6"; sha256="09kq47b7n1sqpsiypp2iiq9agq2b9n8w160245pq4pqlp5xix5dy"; depends=[BiocParallel bluster ggnewscale ggplot2 Matrix patchwork rlang S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment]; }; + VplotR = derive2 { name="VplotR"; version="1.8.0"; sha256="0v9qbz9vg3cd7jjb0bhl2qp8dbwi4f98l4wmppzkz3il624w8ny5"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.16.0"; sha256="0n7mvj9jdp8w5w64i49kkqzbrvpv2vzx6y6fb7g2sqp24wqrn39x"; depends=[limma locfit matrixStats]; }; + XDE = derive2 { name="XDE"; version="2.44.0"; sha256="1djsr92zyh4739ra8v36nylxr3z7rx9lll25mm06vc3l77jxlfzp"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.16.0"; sha256="1c97lsb5shixh4n4mi9kh4gz4qnia9vq736rnzxbs03n5bvlmwlq"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.6.0"; sha256="05bs972b132mccf7k0v6rmacbck0ydi5x06fgzs05m48ykkbx988"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.38.0"; sha256="0ygdyh3s4qsaay930a5lbnmgh6a4gqp5ck9ww466yk0jyk1hxfp9"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.14.0"; sha256="1qy3hj0dijb859q7a2ygb6il4mn2m3f9chy8lkj6lkq64xlayjxg"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.24.0"; sha256="17yxzqvyaa423k0rskahlgqxcsi70flgsxniry3f4m8yvmghxxkz"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.46.0"; sha256="1sis4hwrxyn2x96yysz82gffl2kkj68ry945y15zwikwk80s31hb"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.46.0"; sha256="14diri7gswd6h5p3bdhh20fy7i54d270mq985qcdvdyhx4kpw6g6"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.46.0"; sha256="0lirj0qzzrm996g8yh30x61cg1qkh436qd8xzgv3y3y3n5jj5d3w"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.46.0"; sha256="0plgfzsvg220v6k6p0g7izsfw2lj78331lqyvz0p9vd91ynwp41k"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.46.0"; sha256="00xs1vayl8v6in79iv7lwbn52yyyq4lv6k3k727g7il8x17mi8i0"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.46.0"; sha256="09q8ng5kp47bqpj7m2y2112fkjxcnhzxk9v80hqksm8h1df46riv"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.76.0"; sha256="05q303bf8acvhbdzqxqk2gf12vg0fdqknlxryn2cs8nijx40zp46"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.16.0"; sha256="1z5an4vsm55a0qr46qmp8562vc3xdam5f3840r8hcdnn5dvzw414"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.28.0"; sha256="1d47hbna68qm517afk1wb0w9gb8j52p7nqh5axcc6h76zppsc1sp"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.68.0"; sha256="0a05j1g42wnw5lcn6g6vp2z3mnjz185b2hvdg362ln270r19gch6"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.14.0"; sha256="0h180k4r1lrij1smpibbqgiki1hb2q87n5ay6habig4bxzbx773x"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + affxparser = derive2 { name="affxparser"; version="1.70.0"; sha256="0p42rpyh96aph9jr8kiyjvv860jn7m7ji2nrib2vr2nl0jyaxqjs"; depends=[]; }; + affy = derive2 { name="affy"; version="1.76.0"; sha256="1iix9mq4aph6avs2qr64a7hip461cif56k6npvs5g69nj3rn50gj"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.56.0"; sha256="0phf9rvxr45zq9m5rcjsiixmj9ilz518l628l8cd1hzfdk240ffy"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.50.0"; sha256="0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.74.0"; sha256="1dvkjj0fm3wlkvm8w7cmhdhchpm3sai305gpihrnhxdvr57lv27a"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.74.0"; sha256="18bxnjcl7cbgwm3yf58608ghwnpci94xgil11zmbpgzgrpv9pkrs"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.70.0"; sha256="17slls8dihjnpm6bynic8cm2fbnfl5iqwimz0wz7c9x44d1bxi4l"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.68.0"; sha256="1bdcz9sz4khs7p4ddryc4ir0fwcjrkwqka8y0c9n36ykiv4myfib"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.72.0"; sha256="0jds73pxqf522wcg8qd4b4k1qbhn51av5md1nhgcdnb6is0lzvxi"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.8.0"; sha256="1snsc2430cc7cd0k01n1rwa6vympd79g1mcch0paxxkq7msvfn42"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.30.0"; sha256="15cw004g1vxfwvf939018vmlv9gym4r473jissamkygqdv78hcr0"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.6.0"; sha256="07zxv0sjhlajaw4gxpjni14qyyqn70ar8ph5cpibzcky1lx6pmkl"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alevinQC = derive2 { name="alevinQC"; version="1.14.0"; sha256="0rd64j4hkdk2d6mlld6qkv2m96lqc93807xjdf05xm8qkyx8g8y2"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; + alpine = derive2 { name="alpine"; version="1.24.0"; sha256="0rjnwljh4c2f7ml0m14pllns4pvyjwwf23qsn6zjygm5x04bapf0"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.60.0"; sha256="0fm4l93j6nm1w1w57zzryc1hkzapp8l16pkwjzdzllvwvsnsg8r0"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.20.0"; sha256="1c990i6gxbarcpbdpkz017x94spwzap95l95synlizbkyif4z8ij"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.14.0"; sha256="1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.70.0"; sha256="0qxihlhx7ijspvgzdp8zxzrc44y9pwkygvsllh4v47p85ham49fg"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.40.0"; sha256="18ia189qgsbcivpfsfss05dnd3kdc6gmswq8i1whwf9n227b2cv3"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.76.0"; sha256="06jmnv36y3n6pl1vs6mp14sgyzl4l37g13diaa49k7qwp1kdpl3a"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.72.0"; sha256="1z5vgblhi1kj2n9d4kbqgvwnm48372q0szgjshch8g39dypijvhd"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.24.0"; sha256="08f3xikgb0z1j7n8i04yn1dlfj8rxc76nmf5b7i5ljcp0jqiv07n"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.46.0"; sha256="1a9xgcp48zjql6an3kiv8li4saw10k1dl7qzyyw84xvx856ilv97"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.20.0"; sha256="14ggggfa6mdqcb2hfvann9mb66s7a9nxlnh31zblb3mrrjizg1x3"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.38.0"; sha256="0f32373ncfjbvy05yngmfhhdgyc99a4idz3ry2xlabdmrbs5yac3"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.64.0"; sha256="0ycchrdhx7zh62f0p0gxm7g58m2w3c2lfkaasrwydspd3jx0rsna"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.20.0"; sha256="1hk2y7r734wdd56f18l03kyq9p35kv653a5f7z2cjkq37gvcqrd1"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.16.0"; sha256="1ssldnz4k21i4zpa6r9ja9wvzdlgbrr53pmivwjj7kbvy02906p7"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.28.0"; sha256="01g9vfkmpfkn9nv71jyybq93lid6x93jbadjahngy98w67n3sin4"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.56.0"; sha256="0g66s64n4qlvhkanp33bbvpi93rsdx5xq0mjr96d0195qbf6k156"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.76.0"; sha256="0b5q71bpl9ln26622jvchd4f9i4kwayqkm9b75yj0a69imbfcn4s"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.54.0"; sha256="0jz9b3f8x1aal4sskq1a09jpavhm8alggwbj3ka42fb89xymrz33"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.16.0"; sha256="17pb8ba2p8kk72b1p9x46h7xw3z2js5612388d4lsm4gl2flczyd"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.14.0"; sha256="12za1agpbjjg4i94mikbkdbwqnkzzwz07v0gwdc7lpa9899q2ycb"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.4.0"; sha256="1a3qv66caz2pg67ff9c5424pygsgqnfx67ybzc3zkzaw4fj8cp54"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.50.0"; sha256="0r5vykjqq33gchqv0wp2i6wpnk95cv26w5j4yqxcnw0bnqfhrgkm"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.6.0"; sha256="1nbfp2p33ana2dpadf5m7s1xl1z0ccxhxkrmd5ya5n44rvk1drrq"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; + awst = derive2 { name="awst"; version="1.6.0"; sha256="0dvzkqpjv7whns9q8zj6n2nyvnaw2ib7i53vf049n94x52vh9x15"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.26.0"; sha256="1v5kvvbc5fwvs84d2aq6gq6f6z0l68n7626gcnc8mh3sc27lxz53"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.30.0"; sha256="0iy24vj4lg1k4fzdxf9blc47xsp4dmplajgabsb2s925l7jpxfvw"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="3.0.4"; sha256="174ww8fz8hzybc005w6jbxx4dzgn3samwwfmgl6ais4vyvp9hkf1"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.30.0"; sha256="059pkm5pg9ssd0l8xrm13d0hscqnmlqcb4qb5p4fbzgx6088zg05"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + bandle = derive2 { name="bandle"; version="1.2.0"; sha256="0xam7d7d43k5n4k855if0j21z4vk5igm0vldg31jh4pm3h4j7i1n"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; + banocc = derive2 { name="banocc"; version="1.22.0"; sha256="0d7ss3df6zcfsh8kgy35ghxa6f27ynjhdbi6mdypgk9q24f64r78"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.6.0"; sha256="1b3z83nkl8csxs88rcbmkkfjps71mwnylvpy3kjzyi02xw0kh0c1"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.22.0"; sha256="0zaqgijazcii983agdhav2kn64kpdlmnmw54ipdgcbza6ky26hvh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.10.2"; sha256="14sgm3ia7jj5jckysqkljrffafg6rl8i7fgzsxv8ycnrwbd05d09"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.10.0"; sha256="0gh29w8arg0glawprwshaixv07y756c4lx21h8jjbqlsrbspp8fw"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.14.0"; sha256="1cdpq8zfn718qmsqjp79siddh3kzag4a90p276v261xbjvrxavjv"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.16.0"; sha256="02kkp7c7d57pj51vs7sxi7gpjip7dspd72m4hpvjs5s7bjfxi0f3"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.31.0"; sha256="0lq2wfm3ibrpha9mqhhp6dgsx4jm2kwxvvrj0b62dzqspvg743wh"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.20.0"; sha256="1dynr37kqs0p0as3psa7bw3lxnqwy7aj58mxk8xjsfm8xf7v4733"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.14.0"; sha256="0sa1wh997jfiz2y0dr7v12b7pvlf7icgv6arlyqy57winbnqa96m"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; + beadarray = derive2 { name="beadarray"; version="2.48.0"; sha256="0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.64.0"; sha256="06hy89pclbyxjw5yf5i9bc3wr789b9pmhd9sdchgljlijs9vcj6g"; depends=[Biobase quantsmooth]; }; + beer = derive2 { name="beer"; version="1.2.0"; sha256="0njilbdgrv59ny4vks4xamf00qp3xagkks0sszwqq49lpzdicglj"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; + benchdamic = derive2 { name="benchdamic"; version="1.4.0"; sha256="1f4rnbxxjbd3jyvl6m94hyl15bzxs1zbwyxqkypfmxa7gmj2vcrq"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; + bgx = derive2 { name="bgx"; version="1.64.0"; sha256="1ylg9bnq8iwax0ap4c19v4mkbq673s8dfv49d94znsryg3fp93dl"; depends=[affy Biobase gcrma Rcpp]; }; + bigPint = derive2 { name="bigPint"; version="1.14.0"; sha256="1smf3w5a60jc0bpip5131ad9ykmnrcd33qi3pc3m50g6kn023wz2"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; + bigmelon = derive2 { name="bigmelon"; version="1.24.0"; sha256="094d43yv8af8sijp43ndcaincnsf3ng32vgwh6bfazlq5d601r6y"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.26.0"; sha256="17bwd313dnlmb2h78b4ymlih024v9bkmadcaqjdkhai45wbqzwgy"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.70.0"; sha256="1fnx3q5arsilrvnhndplap8h4ydi9bvmlpfllj1li124hn5n2w3d"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.36.0"; sha256="0r56r4qxibgblriyfbd46i8jhc2bfr9ndr8i30920v9kc3n83cav"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.30.0"; sha256="02gdc26bs0yx7hb53b8ncipsaw6ynfvjcx64qxkxxq1c4awjkhzy"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.10.0"; sha256="1j6w19k124x46gj2p8f1z0i2c03yhiiy1w0fqf504b2r7wy90jxc"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.60.0"; sha256="0ysdmv2hyl8jnmr42lkyvgfqb0z89f5p649ahx0ygs6fw0z226xa"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.66.0"; sha256="1rgn0agw5m4y8838lxzq1r658h1pblaidmm444yfimjffa8znj23"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocthis = derive2 { name="biocthis"; version="1.8.1"; sha256="0zmiaixknwxv72l4fygrn0qr3mvl7kqfbqgflnavs0wxx6xdjqgn"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.6.1"; sha256="0mbqsias2ajw29d1wgl10y2cjqv3slrsgifccz0kh9l5r6bk28vz"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.4.0"; sha256="02c0zvchkd9xf2gakd2ksa4mk8hd8bvg80paq2hx96xqdznhsh49"; depends=[biodb R6]; }; + biodbExpasy = derive2 { name="biodbExpasy"; version="1.2.0"; sha256="16g7xy6r8ggbvjxjl4frfsvsar8hcwgla7q4mmpr01gv9xjvn059"; depends=[biodb chk R6 stringr]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.4.0"; sha256="0zhwf313wilwmxxyibxx62bp9h6rp9jc7c9l46sbdgbcfkk3zdws"; depends=[biodb R6 Rcpp testthat]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.4.0"; sha256="1027jxyhz1spc9wk41xscnbhzimfji0xa6zfgld9gzpjms48gp49"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.4.1"; sha256="0n5c5h0jq8hkmf9hw1phz46qz66jagd5waaf8mi14qnll532xhwx"; depends=[biodb lifecycle R6]; }; + biodbMirbase = derive2 { name="biodbMirbase"; version="1.2.0"; sha256="1mx95sfga6x5cwd9x4ql7r14rm7s26d2vvdkwhhia1m8qwinzvl7"; depends=[biodb chk R6 stringr]; }; + biodbNcbi = derive2 { name="biodbNcbi"; version="1.2.0"; sha256="0bjw5q9ls7p5pi13rzmax4iqfi5l7b0inga9b96bz18mcq071pqp"; depends=[biodb chk R6 XML]; }; + biodbNci = derive2 { name="biodbNci"; version="1.2.0"; sha256="18kjpc71gis82hkg6h7jn0qqwc3m2dlc6ddmyr9cfmm1wvr3fdc6"; depends=[biodb chk R6 Rcpp testthat]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.4.0"; sha256="1xg4f72maczqm2srscnzj3fhibnsya49d9a00d5r6qg1avc3g33v"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.54.0"; sha256="0c6agi652kbffqwd1r3c22ncisqaiy3gqbc9fz13767rr71im6lq"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.26.0"; sha256="0728fpj05bvna5lpm29pdbn4slfmq16nz35as086ddbl2hhc9ni1"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.38.0"; sha256="0n026b744ah5kcnipsyiqqs7vlz5n5im1kgv35i2pgxyzvf7a8sn"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.26.0"; sha256="11ncmxy4wqdg30w8a6dgcsywyzda49f9al435fz3pfj5rmlbbrlj"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; + biotmle = derive2 { name="biotmle"; version="1.22.0"; sha256="1sbwbz0xdws31lsh46mfcijqmi6rm050r1d6vwii65q686x5j43w"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.46.0"; sha256="0k56bq3g5vwnd0vkqg7x7v7i9bakwb8s1yl7k5nwj26k4aw96lw6"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.12.0"; sha256="1fq2nj0vclpxavqj5qx7jc3ympg00izxn9fpy4mlhyp9l921z13m"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.12.0"; sha256="0a30w7n4rcsq4h7ggji8nbk1zx4h9ci7di01xnhks898f59w9ii0"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.32.0"; sha256="1myq7giagr5bhkk96w9dijl01pcqkv288hakv7xbawv5wf5mcima"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.8.0"; sha256="1xi9vl09nm95l35kb9n3pn3j9qxw8976lss3cx0ppwnxd2mjr6vy"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.20.0"; sha256="18wwic1d13ywn85p415pwg2bh32qiri0kzwsa9yk7m415l87i123"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.6.0"; sha256="0v7xn2hj8q53vjhzjrc0vvqvw13waf3mkf4zs0nakiwrdhbr0117"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + borealis = derive2 { name="borealis"; version="1.2.0"; sha256="0ld4q8i8v0q1cjn5kpjxs8f69jrzjrkdp9smdmzqsa9qngl75syx"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.12.0"; sha256="17fdig1ja8mqx6jhpplqmyq8314gk2fid8dd2bfbwj61421gqp4d"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.24.0"; sha256="1900czfg3a9x8fqqqs3x7saph7k4ky6wk0f41d8fjdj88fyxkgsk"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.16.0"; sha256="0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.11.0"; sha256="1xardg6ysz9jijsd9rwbcr7dgks61kdlknpvx10r675hsvy4laz6"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; + bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.34.0"; sha256="0rd0ihr1ai1kvly2zf5y2qx3qyhk3ag2mdsrwqnzs67xkv99glsf"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.4.1"; sha256="17pkpnyxfdbff3yiqh04fdpr6953vcllm0wa2sqafy817kz3vrpy"; depends=[BiocFileCache vroom]; }; + bumphunter = derive2 { name="bumphunter"; version="1.40.0"; sha256="0jwbhd2fhm1w5slwhz8krnw835a8qb4akm3n3pv867bvi0xnp3g2"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.10.1"; sha256="13vvlv2qbrir8582w4p6rq1xkwb0px5sr0k9pk5426vdq7nsw1q1"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.16.0"; sha256="1k2zd67x5j1w4ra87y3w1zkn7ssld6f7siq6ibx3bks3h54rvj1x"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + cageminer = derive2 { name="cageminer"; version="1.4.0"; sha256="0nwphmmg0ylw9v9mx88ygv37qaq02n2ypgbvnqx08hb15bk4cr5b"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; + calm = derive2 { name="calm"; version="1.12.0"; sha256="16ab0hxfk9m3jplwrf5ybxikz7ai54l7xmgv2kcc98ima8lbaml6"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.32.0"; sha256="1w5nsbw2m3dbzj5nph5p5rzl0476j2zacd735f1yzl0y2241vrjx"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.42.0"; sha256="1px53j601a17gslyla7msq6cvxghjqpy818cqdxp4ffq13wsrydr"; depends=[binom Biobase]; }; + cardelino = derive2 { name="cardelino"; version="1.0.0"; sha256="1ma4clkrkrjvy12ln2d2smyzzsz9y9554f5wgwmh9kv6s4xc66qs"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; + casper = derive2 { name="casper"; version="2.32.0"; sha256="0ibdfx7fb99zp5p94f5aga6kpnwg19500pg4nlf2yiqddpsc864s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.42.0"; sha256="1m9kj5ks35wklb30zamzk450sgf01mc1k7a4wi8y1jrp7i32d5ci"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.20.0"; sha256="1r34z9v82i5m2mmdrgi6wid2yyys655qp6bi4j637ljh79c1f80s"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.6.0"; sha256="0qvlyy5m00nxzyaap8lwc9l5mdgr5pya7x7p56cwcwfhlji1d0wm"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccImpute = derive2 { name="ccImpute"; version="1.0.0"; sha256="1w5fwmf619y8ywzi3ksbssqcfkq1hr0jjjl7bcylbvckm3p4bfa6"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; + ccfindR = derive2 { name="ccfindR"; version="1.18.0"; sha256="0snxm5zqa93q9hmqlkbij8saw2q0hhh95d12jmffp5yf1n1d8r9s"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.24.0"; sha256="1cb6z30vx3r2d1qdvrjb9qa6m5dglar8yji9dg9mz5yiygdbvwf7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.34.0"; sha256="1xnlsf0gird9ya0gd2xqjy6c85q5yrbaxv2kg31cn0wdlg55dgfh"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.10.0"; sha256="1phrn8aisjnbzqh7npvngrnk9m1bxwv6d0as1sf1gy8ks4piy4r7"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.16.0"; sha256="13a0hb72i9vnslsmidgwzdsma6qfxq1syfbij726viwaxl6zmxp7"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.14.0"; sha256="1ygp9qz5cs190w3758f0h369rg1ngqsrgyp1nw13jxqz9cig47dx"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.62.0"; sha256="0gkdvdda90m9qq2j5svmrip0kc601zbg7kca4m71qymwvvrdj4nl"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.22.0"; sha256="0i1b5lavzd0jqa5r1l1b3c22ana5vrk7f68385n7g1l8i5fl5ldr"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.26.0"; sha256="0f1d83q3nbvjsk3077793i234yqy71yq6plvvya93vxq32b7ppsh"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.6.0"; sha256="0aj7px50vy27ijx1sgszsxpv13rzsjlsa14m11hwmxdnz1yiihyf"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellscape = derive2 { name="cellscape"; version="1.22.0"; sha256="0bbsq5hqhsv5zs79256iv2w6pid3fdg6yjv86n4fc7qzh9lgkxf5"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cellxgenedp = derive2 { name="cellxgenedp"; version="1.2.1"; sha256="1cgbgv6kx6wkqml4pc9ik9n8gb8q1j8nrdbl6kwl77gx97zn1shg"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; + censcyt = derive2 { name="censcyt"; version="1.6.0"; sha256="0di9d50ak07d8svcq8zhb3bbbr8hjycgh5rhiv4vsi86plj4r7iw"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.4.0"; sha256="0441gyjfbi35444hng16zwjmyj74yfnq6m4l1wlcz8bpss57axkj"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; + cghMCR = derive2 { name="cghMCR"; version="1.56.0"; sha256="1c1h987c61camgz8wjlfg7jlkvfgz3xxkjflrnn97dx8kqzd20ll"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.24.0"; sha256="05yg31s2jqdpk8rc1jkb7ah6hws4m11jz5chg5mmxadq78qxngzp"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.22.0"; sha256="02cy0lk2gllrizmk8fwnzk07k2kd4ha3xiynqvp9zgg0hr6wjyd3"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.48.0"; sha256="1gmspbf5bmlqgbq280lnh4m9bmhzv6d0aj15dmggizsgb9d34vp5"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.64.0"; sha256="1kc9a0ir7wz338c5y0lrrn74ik3i4fnh2m3ag5z2kx2xaxp4w90i"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.28.0"; sha256="0lc782v1m5rm6a0mr8fzhvnv9dw5z3q1rdq6g4yd8vv70579g0ir"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.26.0"; sha256="0s9x125mnfxsznbsyylgnax4529zvqdqszmgghgin213dx6jhfcm"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.20.0"; sha256="1rwgbicbmszdkr05ksxfsisyhk0a4pvc3jrxbzjyc13jj5h6m5kp"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.24.0"; sha256="17p22vsmb9h8ap0f2rzyg2r71srj3sxiapzyaz1csad2vfjxfi2r"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.20.0"; sha256="0ch4jcyr4f130d6cmqqkcvnwq3xfisnns3266m3sf62ng4w1akq5"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="1.16.0"; sha256="0grzp9k06dz04bw07nf9qka19mara1kplyd24y8mg8208wk949f6"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.12.0"; sha256="07l8vaqbw36hvs8pyn1gk6dglnmkcmbafvd4rdrhg2wqwnlpsf40"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.38.0"; sha256="0g3sl12hrh9asghm3ylz1l1v4hlcrsz47jpihqgkh829w0dz67rf"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.36.0"; sha256="0bklip44ls8i8baq8cqh4wm5y4jxn0dyg035iszm209qgkxk8n17"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.36.0"; sha256="0pmgnw807wn22zxz3z3f2gfjqfqi555858anhp125n2hf8pj6k16"; depends=[Biostrings IRanges S4Vectors]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.4.0"; sha256="1m7iwmhwlf9xmbmjnlgrxdd5fhawx76sz5lskrphskj0g2xasajc"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.48.0"; sha256="16wcnc0pnxj50bzwlkfsh56g0cdagfk2yjvaz5yqsrh4p609l0y3"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.38.0"; sha256="0isjvpndqgn615vw75kzhy3nr34q18w096y5s3536y8zrdj0ibag"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.12.0"; sha256="1z92mdm5xcnzql63il3pyj6ak31l8phd3qp7scpkbmzcd2311jhm"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; + clst = derive2 { name="clst"; version="1.46.0"; sha256="0ff9mp78jslqw7b240h84s4n4vii5ga2bam9416fzgs0q8pz1whg"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.46.0"; sha256="02x8z1z0h4j6qrv4pyskfbkylzgnzhfyvb31d3jd6gyarazadzrs"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.26.0"; sha256="0zpyxy7zba8j8zx3zr3ph4xvn6q6jp8lv3x99760aw98ccjm6l3h"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.18.0"; sha256="04kdiwz8qzr7cr1an1c7a684wqv9pkca0iaym5f069pdjhqvvq0a"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.6.0"; sha256="0fm2cz2464xh075p4yl6bha9m6didc41ng4a3flkw1f1cvvpi4g0"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.22.0"; sha256="05ap73pyax6nfb474d2xda5279c8z84pvkshzxwp1q3rb8fn4s6d"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.70.0"; sha256="0kmmb33mq0rgzp83rih8hb7gv51djfn6iak0b2b9806jx3c1cw5y"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.10.0"; sha256="1y7ndmc6mjs841a6nk4b4njpkjaanardpkh0bzacfj288znpx7dg"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.10.0"; sha256="1cgjwnn7w944id42qhnh5xw45hjijl4w26j50fcdiwwl18fdpdxf"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.46.0"; sha256="1l1y1974bibqymibz7smmn8rgn27y3wh5kqkbshh1rd6b9xml0zj"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.44.0"; sha256="1nvh23v63fj5l53bdipkqh1nvr307n4hsr2qi5ba4qs2hpf94wcz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.42.0"; sha256="11xlk9ljwn5zzjawf3gj7715rxxsh67gxrn2agrfzdhxickf8x4k"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.42.0"; sha256="12dxim7dd6nh3pgyn5yg4xkmvv5wpxy202qnarliv2smgs5f9w30"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.30.0"; sha256="0i9r9gs7s8ami9hpfkmw4hshgly6107ib91n7l7l8dkpljndicfa"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coMethDMR = derive2 { name="coMethDMR"; version="1.2.0"; sha256="1d602pg9aaqvjwpdjnn67fb98n6sy557lkqfg8rybybjzx705g4h"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; + coRdon = derive2 { name="coRdon"; version="1.16.0"; sha256="095vk28v1a62cqz0vavvbvjij3azr5sr2n1px31zpx91m9jy616v"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.66.0"; sha256="0w3ddmz22dw7nvgl1wxahlqjw2qsjyh0p001mq5kyqsk0b7zdx0y"; depends=[annotate Biobase BiocGenerics limma]; }; + coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; + cogena = derive2 { name="cogena"; version="1.32.0"; sha256="0hxxk7ijrbji40v5y4y5r6zv6j6z1vn5dwxfxqz4x91igmv8p3qc"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cogeqc = derive2 { name="cogeqc"; version="1.2.0"; sha256="1wjybj2aq84c2lrmfpqcawy6gsvb16vz4qkfwicfbff7bq0nd9qs"; depends=[Biostrings ggplot2 ggtree igraph patchwork reshape2]; }; + cola = derive2 { name="cola"; version="2.4.0"; sha256="0hwkcpbxnh3n4iik492dsxzh1kimg6cwsdlgdjqrzid61rbg5zax"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + comapr = derive2 { name="comapr"; version="1.2.0"; sha256="1b2727fr7fczcy420rg64xhls63pyw7lqzcv8rjcbazjl6673rkb"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; + combi = derive2 { name="combi"; version="1.10.0"; sha256="1522np734gbk4g6m64832f32fsq9fsv0gjgk0qf3axny8l7g3pxy"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.32.0"; sha256="0v5rwcahqz77dcg57agllbvrnfk4cfngzgzib2c2xkjdvyz8bd72"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compartmap = derive2 { name="compartmap"; version="1.16.0"; sha256="0vm5ip7gxs2s0lij3qf3fjgfd4b08f5c8visq9dhjx87bc9dgbcz"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.34.0"; sha256="1cavvgi6gfd06krsabd5amvjlyclnc5lzpy1jl37a5ssppfmymzr"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; + conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; + condiments = derive2 { name="condiments"; version="1.6.0"; sha256="0wf1nrwp4inzwnw29s7ig2601hi3ppwq50vp1vfd65krfkj5ww3w"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consICA = derive2 { name="consICA"; version="1.0.0"; sha256="0rfy6v601sxdpsjkli21927w56jjw0dcav1vnp2sibbb7r2ymrwc"; depends=[BiocParallel fastICA GO_db graph org_Hs_eg_db pheatmap sm SummarizedExperiment survival topGO]; }; + consensus = derive2 { name="consensus"; version="1.16.0"; sha256="180klz7minp2i4v50nkk2svjkhsl5mbv025d2a0h6klmlsmnvyi0"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.16.0"; sha256="0v093plal029m3gvn6ng7i130c6dflwjvjvqipfq37cchkqpibf4"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.20.0"; sha256="0lixy4qg618vqv1i9mjz0v12rnzlakpdbv9wjkbxfc8l5yybqpmh"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.26.0"; sha256="1cn556l4s498sa5immf310ljf7vfwd1vkxk16nsjcf29m91823ms"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.26.0"; sha256="0yw06870jvgzyangyf8sz5sa07zmb7iq1vhlw96gq2jlxzq4s32h"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.32.0"; sha256="0w4g0ybcxzbbnzdywm0n9ycmbb11jxjgr7fiwmb60483p25hx6z2"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.74.0"; sha256="14cnr2b8ijnyk8syz211pnr5246hnsj0qia6b07gz372llv0mk2w"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.66.0"; sha256="1jznqf2n8c2w9d36xp2qwbyfap7kyp4qs3d8bpb8s75hi9yzr04z"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + corral = derive2 { name="corral"; version="1.8.0"; sha256="1xzajapql5dx4chbbcz47qgfm21k82fsd3d0q8626rpgi8lfc5wl"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.22.0"; sha256="1fw10gqzxjn8j8109ahcz8a6yyfpxlifwfmj78m5q72nba0vi4aq"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.32.0"; sha256="0yy6q8b4il7khwar9rbjn9g2jb10ck4lm6znh2lajblsr3zfgl9w"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.6.0"; sha256="17mjjm3mri34m1ksck8dj7bf8ym10kzinq6zn8plns15zljy4cxp"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.16.0"; sha256="0jzxss3lh4jcl8ly3n5jd7xb1zfkg4wwj84q07l0dpnnj0zp3sj0"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.24.0"; sha256="19km0q0nmgfvsz5w8k74f735j9sa8s90nvz77lv8afjq04spznxy"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.24.0"; sha256="1p3kl3qwriab2c6f8qxl65ssys759fwvcp7jvsc3bbpbkldirz59"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.30.0"; sha256="0hkrf1488jj8wzzbsxsc71winrmckcql449jawvxsz9ps92r3314"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.44.0"; sha256="1y8g4dx86s95w0h1y98r2hfyphzw648jz5lhrs6xbrnhz6ficzvn"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprBase = derive2 { name="crisprBase"; version="1.2.0"; sha256="1ym9hm6q124mzjf7a0fky4qray8ylkjga17lbfr083prnb9jkgi8"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; + crisprBowtie = derive2 { name="crisprBowtie"; version="1.2.0"; sha256="1gzil30hnbrv95y4pr8mzvm5xq8xn19c8lh4kk93480ki8j5ll5s"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; + crisprBwa = derive2 { name="crisprBwa"; version="1.2.0"; sha256="1qyi4vpmharkv8h94rqnm85bg56ks16ba5pcbrcmiwm1mr5v33lp"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; + crisprDesign = derive2 { name="crisprDesign"; version="1.0.0"; sha256="15icrrg5ha16g3pbbsxck8zl7x8j433jif7l4l6vf3z67x9pyz75"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; + crisprScore = derive2 { name="crisprScore"; version="1.2.0"; sha256="01zz9hffns2papwczckfhcq7nq832l0hc621k1hx5r2mzrdzsa8g"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; + crisprVerse = derive2 { name="crisprVerse"; version="1.0.0"; sha256="0l1iv9kwwwncav9y2zpkfk937r9bwni6k2ca0c3yafqwpyljn94f"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprViz rlang]; }; + crisprViz = derive2 { name="crisprViz"; version="1.0.0"; sha256="1f4iv2iy751dvik2awwlk46fqnfgqwn9r2kv2iypiyysk1bgwq8d"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.24.0"; sha256="1hmyla7qppbd81jans5kxd6z11vrqhgza7gvibyih4czria5sb05"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.56.0"; sha256="0nhvwdzl71z3c01vlazrarbrz77c8rf5qmsfc9w9fr054dc9r71i"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.24.0"; sha256="0b8l44j9jnn1d79m718cyrggfhy5bq59rws2fjvcal0p8mlsl2n8"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.32.0"; sha256="1nv8mch67mhzwj793w2lcf98x6iz7kin7xp6ipn6p06a4fxzglz7"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.4.0"; sha256="1xyskzy5khbsn1q0fa1824asm2ib8jdaz324dqr6vg7kngqn8sf3"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.72.0"; sha256="098a65fk9la639sqihhsghhgb3hyzv35j6akph908zwq5grsv0c5"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.24.0"; sha256="18rnpxm55w4gr78a64i20yg7jz04cyjr4rgd88czkkwhkj73q465"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.40.0"; sha256="1fzkhnlgv4zd0slr12d5aichyxsca86p82fyjymiz7f5fqdvqmd9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.8.0"; sha256="1jqr80qgnhvsxaagpg7ww115wq0m8jh8sf5pg09xmwh3909y48cr"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.38.0"; sha256="0qc3as0cmhjw9gv5akb35x8vq8ksn14ycs8yajfaczg8g7216x1i"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.6.0"; sha256="0c440ryv56r7ck2l9i93nzaj5wkmnahhkig3l8nvbq0iq22qccir"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.52.0"; sha256="1lahh78i8qv7xfm0k2qkh4chpjl9jp51z4n9q1xks0y5v2934mvs"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.22.0"; sha256="02ci2kl4pq47n0bsd19514g8f098249lqldq2ywhrrql0wibggh3"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.4.0"; sha256="1mq3b6fjns0q5pr2vc37lnviy2jq02lsx0bhpc43yna5gv45qv6p"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytoMEM = derive2 { name="cytoMEM"; version="1.2.0"; sha256="1pz4sfp43d85xd8dkbdpr9kzl6w6g7lm98zqf3cmiz4mnb7rzjwp"; depends=[flowCore gplots matrixStats]; }; + cytolib = derive2 { name="cytolib"; version="2.10.0"; sha256="1y06x7z3p938kfvjx6zqab9hh1xzlrlhdxczyprx7lsd34ylz46n"; depends=[BH Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.10.0"; sha256="1rh0nfvj97x4p0sx9yiqaxc6c4c4xqaapacjj55d93y3k46d0ii5"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.4.0"; sha256="0f83w1fgjrlp91ibcb3xxqvbi27rj3a7fxlg5bwlzaq8lg1yrwdn"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.70.0"; sha256="062nxfry9w674ja3q9zs4df2hvf4wws9jdqpy84g6nb0309vbhqf"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.26.0"; sha256="1cdfq4qa4kkfkqnkyxyr109hbvj5li396rm3p2b11qm2pxmfd7kc"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.36.0"; sha256="0kr61rpw54gjp16nimpj42anr5xn77lnz4bn1dr4d42z7l4ar0zg"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; + dasper = derive2 { name="dasper"; version="1.7.0"; sha256="0r7pv3cv48w3kx89x59yjcfxa9p7sc3aac09vm3g2xm9zhfjny81"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dcGSA = derive2 { name="dcGSA"; version="1.26.0"; sha256="05vs7lbdgh1sh7l30ypm86gs2p9a8485qcpdl27y3rqsn4vb97al"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.14.0"; sha256="0vy6ahav3p8vxj3i9sixdpjz40lgvsp5cz9y62xx1kg641406xpy"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.6.0"; sha256="1r3dwp0s4hsfzpqa8k0mjffgay5hvz9snsb2ym21n2654k1bg071"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.54.0"; sha256="1q98qqxh13ibfxc9cclf3cqawax2qbysg193p0bdh878iyrsvc1y"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.18.0"; sha256="0b1pp1njpm8c48kagy7c1qa82bc8wsfxysgjljh4j7fi4alhcxy2"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.10.0"; sha256="1f9hz4jp862jm1grf4qzdvnzp17ri0n1rhfafgkc1j73z6whw1b0"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.16.0"; sha256="09dm861adbxdy3ncfdxq46wjr4hpn56c66n64xm9gwzkzsrxyc2a"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.26.0"; sha256="0iq7j09xgvhkf671b0f0mpv60mwxpg5yg8b173q54zkcqcsww1ck"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + deco = derive2 { name="deco"; version="1.13.0"; sha256="0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.14.0"; sha256="0agvmgwyk458lhhhspd8243n4897f0q7jf9yqhwsl5wi8011vmqd"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontam = derive2 { name="decontam"; version="1.18.0"; sha256="0bk7ia2flnxwa99b8mf3xdvap3xqa4pvpsrgbnyapxbaqxr5zf82"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.4.3"; sha256="1jz7q4rv3m85bcvarjhqsyc2330fynb0wr5ajd2qffznczk846xb"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.4.0"; sha256="1872pi2v9gymdpqdhab10ash4b2w8sbk1p635lf0p6s4679syhdi"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.44.0"; sha256="051xcg9lx8plbfhiacrv1wsxfac0qqspysq960ppibkf4m8crk81"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.12.0"; sha256="1ygsnhrqsr1pa61s7pq7wmyk1i4hcxyylpinnhbav04zjs8rhg1b"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.38.0"; sha256="1m4jdps2x3qx8mal4ryjffi0ph2kzkpqspfz4dq08mn46qn8nxfi"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + demuxmix = derive2 { name="demuxmix"; version="1.0.0"; sha256="0glqwysbz5vx272s38g4zk0d4zzdnhlsc57yv52g2bxi1vij70an"; depends=[ggplot2 gridExtra MASS Matrix]; }; + densvis = derive2 { name="densvis"; version="1.8.0"; sha256="0fn9m7yykcrxfa7r7hkkh617k3q1xrpwh31dyd0ldwy84cwrldg0"; depends=[assertthat basilisk irlba Rcpp reticulate]; }; + derfinder = derive2 { name="derfinder"; version="1.32.0"; sha256="0v9h3hyfvk72r0d0fx2avmm65dvzb2i06vdx1c3jld8b676ss87r"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.32.0"; sha256="118rjmqy53viczdwj70kaszkpg2r2zbq60k49jg7fqb81prdwy04"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.32.0"; sha256="1pdfjppzg3l2mh7d29gn22hgkm48bznpalks2jd89wajxkhb6cd2"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.12.0"; sha256="0rgd723azjrdxv441k96vircqb18w31q0ljhksbdrvcp9qb85r6i"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.80.0"; sha256="0k0zd15jlffphg6m3c5jfnn5iilmb1g9sdgjzar4m6yyfzl1m51w"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.30.0"; sha256="1rffxh74bfzzi6dm90b7q0hv50pzb1mrmdicz1jrnksjk5hphfap"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.6.0"; sha256="104pfcrnkya4pra7ch2dlb2218f1vkp4xk3l8xn8k726kil56z4s"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.18.0"; sha256="1p7ksn9ly9if8yf4p9x6kya1vh5z68fjgv7acd417k6c1pznzcqf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.18.0"; sha256="10xhvksnnn4m1hly16fwmbr28xgym6a9zkqj8y476jph4wpnhc2s"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffuStats = derive2 { name="diffuStats"; version="1.18.0"; sha256="1p8v2358kkdj50cbw5vvwkcc1dv470ifcggb5cmq2cqxx2ipf3z5"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.30.0"; sha256="0w3m7azy7r2bf9z8sdf7lz7jhnzg9hks4zxrjn30yq6hh8qs53gs"; depends=[Biobase ks viper]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.6.0"; sha256="1ix31jcfi3dg12pa0sz4k4izwc9rsydy6krl7f949lkam2g7s5f8"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.22.0"; sha256="1zhnfah6md93d7ksq94xq0462vmcs5gfk1fcs18wwqw3bq967pgb"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; + distinct = derive2 { name="distinct"; version="1.10.0"; sha256="09cwkbgvbjbxl7z138fmiyssr8c5sdhlvnn99ga3xm27ma5jj5xv"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.10.0"; sha256="0sxpwg2cjw70pzdxbdw68nic521w65ryn83mj0pb2m1ncpimin4b"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.14.0"; sha256="1khxmngdqsvn77hfiyz732q4z268qwk0r9ydmipz25lnddb25p7m"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.44.0"; sha256="1vg6xlw5ia6r1xycd5hrh6s2nxrkrgi34dsd1kfzhkf11d40ydfh"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.18.0"; sha256="1zx62lbj0am85p0c1vk06s7qf8294vk8yyh67nkiqc7xgqqwybyk"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.26.0"; sha256="1qfgfvxj44zyqfcj57lphrqgh7yb3lv807bl9xhg7k2gc3rmy5n1"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.14.0"; sha256="0cpjy8whi7nhpyhyz8k2g70l7rhfpg2xcgclxdasbrj695qy79f0"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + dpeak = derive2 { name="dpeak"; version="1.10.0"; sha256="1cnbvi8x3zjfvbsc71gz8pk7x7fglydhnc8msp6c10sd06blpibs"; depends=[BSgenome IRanges MASS Rcpp]; }; + drawProteins = derive2 { name="drawProteins"; version="1.18.0"; sha256="1gsa1gkpawg5w869syd1anf9j1xz3vd9fxhs170x0jmplvnykgqc"; depends=[dplyr ggplot2 httr readr tidyr]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.6.0"; sha256="04y6kh1nw8rlinv33pyavwrvz900283kigjakv5az95fwchc7zap"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dupRadar = derive2 { name="dupRadar"; version="1.28.0"; sha256="107m3y9d123cvh5cxlpd6xibi569jzpj4whn8rsbrmgbrj6qghcr"; depends=[KernSmooth Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.58.0"; sha256="1jjy1z4f5yg63ds43nrf9gdsq7vsjblfnqc6c12q63l4qgxvbsw5"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.4.0"; sha256="1fdfn9bs8676l87jhbpm24c1gz6i272syfp00qwzj2491vibnndp"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.34.0"; sha256="0851zpqhks96l0bqbay15nglycg3l354av77crmbdjgii5573f53"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyreporting = derive2 { name="easyreporting"; version="1.10.0"; sha256="1aaymshvz3pcpqzjv57f55w8jzvm905w1v7q6kfp4phd79zdvba8"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.70.0"; sha256="0xvlqfb061a53vqfalz1byrrmc24mdqasm3img1i35izqvxz90bi"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.30.0"; sha256="0sqkzmfxnh4zf2lijaizdv4l07qa0fj75axsw76zzsi1pr91yrbn"; depends=[Biobase MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.40.0"; sha256="18vap3qp9blncr4sdl9q1szb4qhm46gldhxy3k3abw9fckcvggwg"; depends=[limma locfit Rcpp]; }; + eds = derive2 { name="eds"; version="1.0.0"; sha256="1jfv281pwr3ibr9rnnf41jj1sfj25k0yaln1h175flxkvvhnisba"; depends=[Matrix Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.24.0"; sha256="1rla8x3w4r7da79kxaijgz804ma3s71xs7hm4xj5ccrvg4rvsr61"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.38.0"; sha256="0f9s20b219scx6al1rb8hzq79d40amvc7rg31kvdknfadqsjv5v1"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.10.0"; sha256="0ilm97h7rwiz7za9n4dwsvk1r7q0fbb5dbb1z13dwal7c367c2a7"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.4.0"; sha256="1mn3v88w465779zjbz2csdx0n9fjb39wnbc0s5004f8q54jsw0k5"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enrichTF = derive2 { name="enrichTF"; version="1.14.0"; sha256="17jzm9x86rdqn59gr79kl9af9l0scaz20xnv7b273xpscwrxi139"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichplot = derive2 { name="enrichplot"; version="1.18.3"; sha256="0nzcr23m58z3h0n0frxf26z14j7ilcl4fjy7rqm7f2i1wyld70zl"; depends=[aplot DOSE ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.40.0"; sha256="1g7574d813p43qcl82vqw8vd3rn485wi3ckb8b6bkjhw09wikb9r"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.22.0"; sha256="1v1in3imqbwak3v9w99l6hq8kihai5xvpgxvg7imna7jn1w8kmji"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.22.0"; sha256="1j41l2qm83cdhm56bnzx0wp31yph7shfxr0kav7wc6dqxkjjhjjf"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.6.0"; sha256="01g58msm7dnnxgjl2q3c3dfrcw7zvivhvbyxlk3z14y6qcyhn5gq"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.6.0"; sha256="0qfb912xsyp4cvblhpwpa22iziwqz39hfnf8x68d23pnfwnb1v74"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.38.0"; sha256="0vdrnn2qmcy3znz534m5iynvzw208whcyypw7mhdqvrfzkzb4m4a"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.6.0"; sha256="1pi1mm0m9pzsjm84na046gl4xr9f0jn95mwq8zpg239yj4wa6898"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; + epimutacions = derive2 { name="epimutacions"; version="1.2.0"; sha256="1anpx122fcrwldkv5bz5c1cmf6a7y1ai8pc5wjpch7c0nim4a8xg"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + epistack = derive2 { name="epistack"; version="1.4.0"; sha256="06z380js0hgnps8nkfrk2ay7s8fyqbndipavk5ipihbp80yzmgpx"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; }; + epistasisGA = derive2 { name="epistasisGA"; version="1.0.0"; sha256="1qgq3j71sr0rlbp0h9xniy4nhsi9dhlxqky78fk2dwly27fqlrni"; depends=[batchtools BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; + epivizr = derive2 { name="epivizr"; version="2.28.0"; sha256="13y9wc28fkn2zvl68qf1jwxcd3kph98iyfw6p7i7c3ghsphmml56"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.20.0"; sha256="1yr03i5da7nwyg750ikm6m10x9w4pi34s19xszg87qh2hd15h2ll"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.26.0"; sha256="0g68ncr2gxzb6s98aal7fb64bpbyzfya9bv6b6n0kqv6xvvm88yb"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.26.0"; sha256="1db4hgnal7lrzp8b3dmsqv8z4ddw0lsgjmivl1s5dihvnmpsj1k8"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.26.0"; sha256="0g5qpw9kcsrrqi86h0pz4jlz82h3czs34hpxzz0b2bnqrx44ys5m"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.32.0"; sha256="12wvbikm11kyvy81gyw513q2mjh4vai0l8lwdnaazan1x1k8pgr8"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.14.0"; sha256="06zxqzbzb0jrk357900gv1r2n81i49rbmrxla02f879kq2ik9cyd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.20.0"; sha256="1ndv5102aycv5swi08c9gvy66cpx2p2k18bncbl134y1c9ss86fk"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="1.8.0"; sha256="1wb8876506m5bprzbkp6zfa3mv87qyadkffv6ph5m207ixwx502d"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; + esetVis = derive2 { name="esetVis"; version="1.24.0"; sha256="1vnld99li8a5391k185q0xf5fl00q0k76dk9k95b4nx2zmajs7sv"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.28.0"; sha256="0q6x3nlvarhgc1fq5j4h7hxq5dcmfm0fgm3lmgz63bcbpsf60n5g"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.14.0"; sha256="0wjmm2wzqprn0v0vn90cc3b3wsa274b305p661fdpsql4714jmrq"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.44.0"; sha256="11a95rpqzc5502s75ar703bv9hisgfx7yqdf03n0q1qh6ykil35g"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.10.0"; sha256="1j8l3q5bq3yb1889vjpk8l9qzrmg7lv38m7jb57cb9q67sflqjzs"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; + extraChIPs = derive2 { name="extraChIPs"; version="1.2.2"; sha256="1cshpsbabzhz36c9vvzlpmbqlaqgy7x1sah2ikgdh8rzgqny65gk"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; + fCCAC = derive2 { name="fCCAC"; version="1.24.0"; sha256="1r4rdbv1xv8rwsna8w89fzd76hzspf825fxzcn475ll31gmsxsrv"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.28.0"; sha256="1jiws5q3ppq0z0s71nhb6fs63470v2di45y0gdf7anjnpxgjcjq9"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.44.0"; sha256="1fjysjnanjpaywcb4jk8n66mjc3ffn4jscvwqfkpjh7d757xc716"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.74.0"; sha256="1wimcf0xnrpfahda9lj90xqcnq76yw7swbgasrdinay37a3dv0ki"; depends=[Biobase]; }; + factR = derive2 { name="factR"; version="1.0.0"; sha256="1ql328w2g6ds74vby36h4d9c7drwby2ah82mqgkjbqw01qr6gk75"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; + famat = derive2 { name="famat"; version="1.8.0"; sha256="1l54ggmqbwj0p3zwln237pggalykmkd46jddaz85gvfhv664bvfn"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + farms = derive2 { name="farms"; version="1.50.0"; sha256="1zd5f6prz2g00nvchfx4zaw3v722dn9149y205n3c0zv5q6p4w70"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.34.0"; sha256="0c85gwdbkw6z8xli3c7q6smwpalllr3ad4x5j40mjndnqrl0pzmm"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastreeR = derive2 { name="fastreeR"; version="1.2.0"; sha256="04srd57vv4hhrqbysjh0v9cdhchixif4rkl10aqfjflyw72q5his"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; + fastseg = derive2 { name="fastseg"; version="1.44.0"; sha256="1m1x7xmbxwa15vzd45h16pnib944f20pwinx1pyhba5hcngkikfi"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.12.0"; sha256="0z83ncjxw9x8nvc6pncrvpf6lmamvgrv56j96s1f0x9jydk18chy"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fcoex = derive2 { name="fcoex"; version="1.12.0"; sha256="01k8v41yqrlcq8x9aaxjfxd477g219jlawnjm2c6k34028ybsc52"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; + fdrame = derive2 { name="fdrame"; version="1.70.0"; sha256="1p382fak15w2ny5kbvlwdl8iyi28y1avrsl0xk0ds4a0njljxp06"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.6.0"; sha256="0x0y32zr2h0x8ziv6z0q3dyalpbc4xbd3axqgdqf70mapf8wa5gc"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + ffpe = derive2 { name="ffpe"; version="1.42.0"; sha256="0r0xw11c14bkzwis8ppfm8s6mw6k9fx14bnp4r02bcjgq5ih1jvq"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.6.0"; sha256="18c2klg52kmnx0rrb3n0y12l1xq9yl0krjpzifb3i1gl7k66clcf"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.24.0"; sha256="1frl5mchbrgqyxxdlw76qqq5i8vv2fdmy8xl8h8c8cvvmlz393qk"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp]; }; + fishpond = derive2 { name="fishpond"; version="2.4.0"; sha256="112jd53wbiv1w0n8dc4qn6257wbbbg5i20s9wlvaw98jma94afa6"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.54.0"; sha256="112vib2g3cvniqn800pn2ifalp5q2l1l7mvqfq8zhwp64i6qxivm"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.28.0"; sha256="18zrlnjw89iglxhw65ys8x4r44pdzp5chrgwx7w44sh7yd8576g9"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.36.0"; sha256="1ng2c0vm2qldipzjnks2qyv9ngwc489jwqfsa4kfiyvhm5dwm1hw"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.34.0"; sha256="1d6bkidvxw76jj8c64d2r0bggxss3xyy97w3qrhix8613w63adcs"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.32.0"; sha256="18mcywl4857wmka63rcnvp2xvh8wj5r8gvbsri9a3f4190wg8yn9"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; }; + flowClean = derive2 { name="flowClean"; version="1.36.0"; sha256="1wqwq8fw0dk78l43p4cjzll3psc0d4mg7gjckddvpmzlg6w4ha3k"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.36.0"; sha256="1l1lfgm6x06gyzda36m6gvqmb91zbrz8m83b1fnfzpxkhqha20yq"; depends=[Biobase BiocGenerics flowCore graph]; }; + flowCore = derive2 { name="flowCore"; version="2.10.0"; sha256="0j0ryyz3vcih964is5gdm2jp39ssdli9q6r03q6rj9nwzplq5asj"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.8.0"; sha256="0p66wcr940m5nvl024izqn3w0x6zmp0n7j43xj70arfcxrxp9gxd"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.34.0"; sha256="1nbg49s18mxvr5pzv4lx4hvdrwxn5spagxn71zid5kgk13f142a6"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.32.0"; sha256="1gflq7s7akfjha7ijddgh9qshzwi1yhgp2s5p6gll0rsfaicaxs9"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.56.3"; sha256="04f67vnn2ccxp8mw2sk2riqh0v4hk46fz1i66jsdp6j1vd650r7y"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGraph = derive2 { name="flowGraph"; version="1.6.0"; sha256="1srpzkvk69v90bqxz9mivfp69zvn45x6jbgvfnxwq0yz3s6x95is"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMap = derive2 { name="flowMap"; version="1.36.0"; sha256="11dvjmbyv46l55cp4jklqwx4000xhc3pxmwrpa1z2sbladmd9hiq"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.34.0"; sha256="1c0qxypv5814m9fwrpzl44hii8fcn35xmj6wyimclnar3q0r4rs6"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.58.0"; sha256="1hmr2i5svg1wvdgqhnp25k1c21p2pdd0ia9py5kp9sm5qvc9vngw"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.46.0"; sha256="1sr1icmkd27k7zzykwml44aqkk6fk1p697ndw9qsw6vvv0zp4d1n"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.44.0"; sha256="0n3sbb9acvj5srrlxv58n858s9nns62y0pj46pplx5gv7i8hxbcp"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.24.0"; sha256="0x6cd0ng39jgwd3hxwfwqkk3grqb3dalv84yyp7cfc0y64nkpv64"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.46.0"; sha256="1vqx2qww5y5p1mcv99qlm1k077gnd4dwmi83ax31rz5kqip2g7b0"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.12.0"; sha256="1xf0mf9s0srn7ch5hkl37d5igp20pi8jl52b06azdblqsgv3h0cr"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.10.0"; sha256="10xq0rfnshvam2yh34566ywmsby44aa1fg8wqwmllm202rhcgl2p"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.22.2"; sha256="0qmd2a50qy1fldqhp25nzafxi0jv7x2v2fhpmfckwn0qwkg3splp"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.50.0"; sha256="0adhha052by515v43z5kvcr4hzv6z1mhx3jry1x4x75zj51wj8pm"; depends=[flowClust flowCore flowViz]; }; + flowVS = derive2 { name="flowVS"; version="1.30.0"; sha256="0sv05dzcik2qqvja0ag3ag3qpg5r89rzynil81z5m3b62xq1i6nz"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.62.0"; sha256="0yz2b3l0bv5i7vrr893wrs3jl215i17m2hr92iisdc6mh9i0lpz8"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.10.0"; sha256="07w2pnnzmivfc621c8pvndqrn1k245cwjrb0nnk2i85i3si4j9c3"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.32.0"; sha256="1flq3n3j57yxq00dqqwl45xxacw7qgn2raqmnczgnsflihyysldz"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.40.0"; sha256="00xi01wz61ip8pnbrpnpp8hncb8gyiw69qkbg0cl425rv6qjb3mr"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.8.0"; sha256="1nw7ibbqw30p9mj3vi7pd3ixry6fwai02mg3rys48bld0aipw21l"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.6.0"; sha256="0i3bdg22750hf9l3hkgz5vjq0ysvr99571zrdabmq7m54788fl9w"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.10.0"; sha256="1iylq196bl7ysypvcfqpp5gz5c8ax79p3icbyl31cxmj9ssf486a"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.50.0"; sha256="0pn8b7fgz1ys3pm603ya6nkngbc9q8dsx3zxijdzf1v0b1sm1fi1"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.50.0"; sha256="0j6z94icgs9j1ryxr1a2fv9p14nzl3zy695fbc6d87gm0ccjy745"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.22.0"; sha256="0qf2c28r6jv4cf8qpag4zi8k64b5x3mqs9jc6g8iy9v6323vdcpy"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.4.0"; sha256="0rmxrvb97844qjis945drmk3z63ks89c587ysxc1ldka503za7rj"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.44.0"; sha256="19sjqlrjxcphs5a3mzwr0a7a504ap2zpwnzlrzmhad7v1dgicn5g"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.48.0"; sha256="08qvg1cmrln7w5z33r81kz1zjs8fcj3qbxm1crbsazvb6gdpqyyi"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.66.0"; sha256="16w40jkaz1nhvzwg3q62mzigh9kpvhhyky1bnz2bwjbl49fspvqg"; depends=[graph rJava RUnit]; }; + garfield = derive2 { name="garfield"; version="1.26.0"; sha256="0cm2lg9qsnlp60i3rc2c4d6xc73r285rznkgdkw646c62s48lhs8"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.22.0"; sha256="1n3g6fvj86q9n6q3ccmj6ns0gdd4sqfdm43sh1hpxkid9v88209y"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="1.28.0"; sha256="0c92g636x8kcsypw8slmnib472prh7mqbkn1wn5silprs6akfg9g"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.70.0"; sha256="0a3wjwjgjkpmfvgg0b4jc1rkwzsqrjbaziydjfnkll4rw9xcavy1"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.34.0"; sha256="1ck3qq4vhjp6vvicpldr7d2rkpspp5albjkbqjbshnbq11fhrk06"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.38.0"; sha256="1ahlml1ssjmg126ki1phdprq4v0nawzbbfq8jray5ypaj32qx3r2"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.12.0"; sha256="12p44p3nzn32am2m609k64iy4lfj42dygdxmb770ld8lpihhrkmz"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + gemma_R = derive2 { name="gemma.R"; version="1.0.0"; sha256="1xgjms6hk4b0ilm769abqkvqs3zs6za1kbg2banl1z99b5ksvyqf"; depends=[Biobase bit64 data_table glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + genArise = derive2 { name="genArise"; version="1.74.0"; sha256="19yrrmqb83zg075cbwfb2k3s96fvhl19bhjc5v9xva12k3n14dxh"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.26.0"; sha256="06nkwpsaqrmja9731d3i420f1i8v3vzq20ih44cwxnd7a0zja288"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.24.0"; sha256="00imcb2slqfflcm3jalcjspqv8m9kyfvv1m1nxlxbdaa4qgrn9yx"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.22.0"; sha256="03ccb749frf3pp2rqcyf1jly7rpld3nrg61507xvk3x841nxnas4"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.70.0"; sha256="0iki40fg9mdkj131sc3f4wj6b4mz0jidpbzyxskcdm4l81ar8amv"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.34.0"; sha256="0amxn2gw2k4hvhxy446v7f4s4jcgm5mrv1l1afv3svmlpq57llrb"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.24.0"; sha256="0b0p0p00261g296a0bwzl9fnmd5gky8l3dd33l8a4v5p08kfciz9"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.80.1"; sha256="0zi53qi0qxcndf4305vknywgclbz7fm96sgl9vr4gf7725ji4j0i"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.30.0"; sha256="0s10bz0iis6kwbb9ss9m0bz7al52yq9r0i9gcn8zvzb3533zr5mk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.24.0"; sha256="161bgb6b4bq923zpjla4z8c0xw4q754igimpf7kv8kqnbpnmncx1"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.76.0"; sha256="094v4skdvsnc7bp3acj801ih022w9k96f2b857326vd19khz0ava"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.50.0"; sha256="1m53f6yd692rsrhhr1kq4mwv13kmjlkq8cvcbkn736vbpq07j743"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.30.0"; sha256="098ldnh45f48145jfsbdw5dqv5yiqkfci1fy6h6gjz7nh3dvnil5"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.54.0"; sha256="0kl280hdqiqkzb21l4z49jkidvr8s5bzdxpl38ci8ljia5imi38y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.28.0"; sha256="1lsmcz2l4mv62q7w2rncb0m92jwhz4p05yfqqk0apjv1hffc3y9j"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.4.0"; sha256="0553wd872zlfwqily7pww9frpn40jqp8i0hgg8sf1qmjn9apj24f"; depends=[checkmate mixtools SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + gep2pep = derive2 { name="gep2pep"; version="1.18.0"; sha256="1bijky1qjp5nw3w27nsl9w4bq41zqx98ki7w2s3mz0qz6hwahnw1"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.30.0"; sha256="0mrfc7mfb7q2vlw4bppjgpgna4h7s3sidiv5lpjqxbi6cmva6ka0"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.8.0"; sha256="1yclldn6hfjdbb5gc6q2kdfz65hxx2ija3apramvhwcbq2h1ygpp"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.6.0"; sha256="00vkg5gil1jr1hv1swccxhs9iyrn2vjrggrf04y6svfqcs3h9hh8"; depends=[dbscan fastcluster matrixStats]; }; + ggbio = derive2 { name="ggbio"; version="1.46.0"; sha256="1gm3y1nx0ah8wcrg2dh1xd688izm2sijz7bhgsasxckmmkmkp60g"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.26.3"; sha256="0ml07pj1pimr7gd0hv814aarg0g8xndq1j4yn3p8x01c2drrrlzw"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggmanh = derive2 { name="ggmanh"; version="1.2.0"; sha256="1igvm20k3y0kfa5ia45ynyp9d90c5czjbdz95dvj1gzjy7ql5c4j"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; + ggmsa = derive2 { name="ggmsa"; version="1.4.0"; sha256="0pqxf7dlb403xj4d5s683k5zdakwgq3ic98lk43dl0ib19mg3dih"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; + ggspavis = derive2 { name="ggspavis"; version="1.4.0"; sha256="00s1xadh164adziszqjfzcznjjpbcf805xshp0c8qr24g0d86jim"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.6.2"; sha256="177nq6arhxp0x6zsf2c6cn3xxwfk65dihbpni6mb9ifgnmfqdjmx"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.0.0"; sha256="1i562x3f28wm5ac5izzpriwh9ywqq40zbbv5g70vjyqcwsh35wh4"; depends=[ggplot2 ggtree tidytree]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.8.1"; sha256="0sbjkljv8zj5plr4az5hiz2m0bjnqfgrwcd02rmlrnxhbzj2kcj6"; depends=[cli ggnewscale ggplot2 ggtree rlang tidytree]; }; + girafe = derive2 { name="girafe"; version="1.50.0"; sha256="0kv6s77fs6rgrrv5hcr8qc86ida0qrwcfzby2xcyris0fk56k5sc"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.10.0"; sha256="12jbqigg4k2ngrk2anbrrxrwkp57bbzdz492lg8lc6w1gygp5yip"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.16.0"; sha256="1573cclc2qn4mhw24k7ab75a9inc7z205b0j85favmvv1zcyqal4"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.26.0"; sha256="0l4n755v8gxxrxqgzhks4yz06rr3m703zaaavh0fyryk2mnijpip"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.52.0"; sha256="1qcrs7dasb1aaws3zkiipznlc1z6i7zijhcsfv6hw3d9wpb0np9k"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.40.0"; sha256="03fi4ld4f102xch75z6s67kb27mvyg5zik5n59ni4zdiipi9i2cl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.10.0"; sha256="0vafsa3i8z08bfl4x0adlg3bf0jdw4a7zb459cw7bfdkkw8g4850"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.60.0"; sha256="0wkvb79lb309ff6iv8p23z9rwrrv7qha86ngs0ag670mpm9yra5j"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.22.0"; sha256="06wp18i25c35w651gz9xl9x4yklx52vrz6r5pr5z15pgwjc0n5hy"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goSorensen = derive2 { name="goSorensen"; version="1.0.0"; sha256="0vv8wx6213wawr9zvy0x8nlr4cj6ccpgfasynn7qi85hmsx3ygfm"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db]; }; + goTools = derive2 { name="goTools"; version="1.72.0"; sha256="1h9aj2n8w7z04jjhd8gabmsvr4ib0vhms3iiry00g3xp68yc8zdg"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.50.0"; sha256="0x89lv84l3qcahca54njcza326553zij2xyagy18mwlprdrq4iy8"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.70.0"; sha256="0kxk22l9rm4kxlf0mr4zb01nr2vlia1g4xq9fsd6fdn6d535k1ci"; depends=[]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.14.0"; sha256="02ksc7cls7q8yrcsr0i15i6rb3nyzxapafg0zkwgj55x28gy0q9x"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.6.0"; sha256="0im7xhvdxm97hda6zwj22xlcinyjqi2jfykw7mi091z2d0by7rln"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.14.0"; sha256="12r1h17w9fcjn18kijb40a1hrpxd8acagva5hhzxsfj67q76chnn"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.76.0"; sha256="1hdbxjvgkxb9m341i9qbskb41g2z8qifkhgkpj2xb20s2dnxn3cc"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.44.0"; sha256="0gkjab12ncag1vslc5bwlr0m5ac3ifq9ka5nfq7ckrpns98s7k0w"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; + groHMM = derive2 { name="groHMM"; version="1.32.0"; sha256="1as3k6avyc4l7saw02x0ql68c06msvs1s824vc1xg6lkdsi4lsyc"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.12.0"; sha256="0d8ffg4mis6hy4xx6f8ry5vxd2cilzxws56jqpv8diw0dnvfv1dz"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.18.0"; sha256="0gvir3pdshsv22v2q619lzsi2wwyb5bql3vsgmzc3z1nj6jij0zr"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.30.0"; sha256="09f20qam59iwr48g854b7ydbsbqy90mdy83i2i0am4gybv5isgqg"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.30.0"; sha256="0sj51cli1p8k7z1nl5rfswjlzrk9cqnpr1a1pr618gk74kfwqf5a"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.16.0"; sha256="0rrcykwn922wwqrz6gayvwid8hpfqms14cgzvnqh9gcwgcjjrica"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.32.0"; sha256="09dczq9yl28zy2jih24blxlpsmkphwaks0hlp3yl5ibfwdnihnk9"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.40.0"; sha256="09c5ra1smy38w75dqzsamynp8xny6hzb75vn1207hq7z5km8lb9c"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.6.0"; sha256="1z20rlyc4920hdx0npqhbpmplawlwz8d5gyy5rf95g84d6klxs7c"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.22.0"; sha256="01jvfjfh3ji0f6wf3xwmz0abpm23x1aan7dw0nycm5cm0bxjwgh4"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hermes = derive2 { name="hermes"; version="1.2.0"; sha256="1akh46jvhl63lva8jfpqzckczvdw0yjpkw5c0qnvgxl3sajvbw0n"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.32.0"; sha256="05l07ycm72i2qv7wlbssk1wh3ly961x444hwbpaii8fm65x5a0k2"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.34.0"; sha256="00m0vkdb552nw0yn6wx01wdvf6g8i33q0wl4ishscmvcwld803vj"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.28.0"; sha256="04jbrin7jyj72bfxp3rgmmr796gy2v3mvnb593w9ldq5620az20b"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.16.0"; sha256="0f8m0wbghwjlavkj4r089z7xix27jnc57d0sddw4hamv9hi6zm95"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="2.14.0"; sha256="0ghav95b2cv0y61m14yq332yzrjhipm01dnc9qvb9zqdnwwqhdj1"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.18.0"; sha256="12q6cr8fwl298vd2v3cdzm6cjkmwfssn4h1cy3f7ky1n7dkpnw30"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.58.0"; sha256="06qpg76d8ycpgvxfblz4va7i2f705rv3bi19c2lw84vnkmhzdcf6"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.40.0"; sha256="1dls59d2ysk8ngk5c6nx7xqgc2iygbdlzf88gccf2wm8zhy8m3f4"; depends=[]; }; + hummingbird = derive2 { name="hummingbird"; version="1.8.0"; sha256="1glnxhqvdxb1n8xk3pjh68nyg5vqvxszd7q24qir380x8d9ncrpg"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hypeR = derive2 { name="hypeR"; version="1.14.0"; sha256="0vni4s1rvdjm4l5jaa2kq0i1z87jw09vd1pw63aa0v6qk1vr96vc"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.50.0"; sha256="1fl4ia2jskvmbwk0y1wd0x4dgqph0av7bx2zffrvd1a5ppcjmsra"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.70.0"; sha256="1jvnvzjivjwqxh19c3g37kpyl6i6mxw99ma3ypjjgxzx898nsg45"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.42.0"; sha256="1v7ax7847ygdy6mxwbg6awy52dms0nirbyn1z0cwsjssvi4q4hd5"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.42.0"; sha256="0yhvp522s23y6239v340ilbyaii5qfj7vc76x0j6c56yd807zmhb"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.38.0"; sha256="1k08dslcyfyzyb9zn1r0ddnvrrp2370n4w3762xz1zdsfs7h551k"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.26.0"; sha256="1x47wy0spsfv58b96ys2ym0f3ivs6b68a2h82wyp5viyq7imphbn"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.18.0"; sha256="1j1cvk42l9p2r6n6zhijw26ydwki6fpj8d70592mqhv9m38ms9i3"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.26.0"; sha256="0mh7arn5rv26picz05ywil5ynras91xv6diwh47s9ip75vp9s3cy"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.28.0"; sha256="0aa76j1vlrhyfppqa91dfzrh5ljxx7zylycrmjy35hx0ja0zck00"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.52.0"; sha256="1c3l24v0hm2dnidg8l9v6gqwrm51pqhw3mjg4x1a4vy1rq3j6jrj"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.34.1"; sha256="0k0vl7ddkpdv9y8whkv512jc7a4wxyi00jf393bjdppgjj4yk79s"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.28.0"; sha256="1knvx7b4h85ldqxq3a54fm05axb8zcvqm5by98wsdz4h6dzikxjh"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.42.0"; sha256="0dsmjqipj871ygjzc8js5xvy5xpfj22853c4a3wdf2qhriw1c0ms"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.4.0"; sha256="0df426fjw00wawl5an91l59i6k811pi9069ayxv6ysq4vhjk4dwq"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.10.0"; sha256="1l2bwqk7ivj79xxjzc0hc3x5v5h19zpk9pa0vbpb5p64z1pshnjn"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEhex = derive2 { name="iSEEhex"; version="1.0.0"; sha256="06n9ls71rg2kilr3kjlwwk5rnj8v68svjmzcr2hg0gwwyaxcyk9w"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; + iSEEhub = derive2 { name="iSEEhub"; version="1.0.0"; sha256="1ggkm7931axcl0464h0d5cnf5lbd6nx3fbac1zrlkwyb2lym7wi8"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; + iSEEu = derive2 { name="iSEEu"; version="1.10.0"; sha256="0040k9p1bmlg2065s3a124qvx5qgqqs4kgbkkz0k9vsdvr3z87zs"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.50.0"; sha256="1h0da0298g2lvvqbys3jh2acjjzh1dvivfpl07g319nafxkfsi1q"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.16.0"; sha256="192cpnpyyjf16pqnzj70nsqkzv6wp4acia7fciz1zvz5jhncrsva"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.46.0"; sha256="0kxqpb9711yxg5xz2mhpwjw9nwixmfzzy6qql1sifi4mp6bh2fzf"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.16.0"; sha256="03v3ymmzj8dbpayjjpxm3cm8c2ysyd2p7yq0hp7lmv8pyq9x05xy"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.22.0"; sha256="19byvmqv5bx2s4jsjr317xwpd96miz83gdamw9xx1byzka6wz29m"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.74.0"; sha256="094n43lv6v1l1hcrfvgyx8a5dp7sk154f25dwrxb0b2k4g2kxdn0"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.8.0"; sha256="06apnwy114hbjmfvyc47zajchhi9l7zmnxbdqx13d9gazj2sigbf"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.12.0"; sha256="1qrrjb67wymak2nl8jisjv5xrp3sjmyx19rr7wrp7ffh84y8dm1b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.18.0"; sha256="06rnq6miqy5s4fcmlblwsvl0limynsr73s2lzbxd4dly7ypp4d32"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.40.0"; sha256="1cw526mbhh0czkwk99qnr6hfwi4k4xi2bm5p14kw9sr00if59x12"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + imcRtools = derive2 { name="imcRtools"; version="1.4.2"; sha256="0d3gcqq1jc7h9mvhvmyf5b524pyd9cqnwx2ci2y75l81jqyqb0hb"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.30.0"; sha256="0isqbgg5bmxlcw4nhhsz2dgpzhjkyz690kgj4qbrx00k0xq1wkn4"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.5.0"; sha256="09fahcn8jcf7xdjhqjiaphnkn8v303ancb0ixc03frhqk1k8srqv"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.72.1"; sha256="0862mpbmznizcq5bgnp85dl9q0bip76jkga45gssdrv90wsi2192"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.14.0"; sha256="11hgw6c67gd3ih5q14a520sjmnlv56qw19z0i6s5pz2slmgflpry"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.8.0"; sha256="03kmx5hsqzcjc1vw84ylnahq8ys42lanbir7a20lrhb3r7380swa"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.38.0"; sha256="15nrx15jpm4dpv249vxvgkvz2hh8980hqlr3vv4m24a2gcrn6sn1"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.8.0"; sha256="0yx7am1w9facdj7i1kcrhh65saq2bll7q6vh0i39dhw6fwciih17"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.36.0"; sha256="0zh6l2qdl4hvplc3d1p6y0fvr5wv7nijagj4laf2jb0y2jrs8c00"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.36.0"; sha256="1j2cz929q9hwkchnzcs3mnbmhg68mm06r9bgylnbll4j5ibqicrz"; depends=[BiocGenerics DT shiny]; }; + ipdDb = derive2 { name="ipdDb"; version="1.16.0"; sha256="0kza7156a4b79jswxwj7knc4sgknpv9sm4l41lgjrzzm0vipczn0"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.44.0"; sha256="1p9kwkj0yr8in4hxhvy85wvgf5zc9m57b8skgwb2331fmbq8iipn"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.26.0"; sha256="0ybnr5y3ji3v7b7wn6762v92xvy6y6zl0vq4z8mz6mnqr3245zc6"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.20.0"; sha256="1rdn88c65ybalr6sv7vlcmw3272l59gvnrv8xc81phlszzv1nqd5"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.56.0"; sha256="0pplkj731v94aq9jkwcxcr5ddd88qssnvl8r03vwll3c003pp3yk"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.56.0"; sha256="02zcwrb9kj9q444rg3qqsms80qapxfx9mpwam6gbbz6ziqp3pzcb"; depends=[BMA leaps survival]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.20.0"; sha256="0axxj9i83djpms8xhgw2ishac1p9866v4dbsy9fgs3plym7jzm8g"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.24.0"; sha256="1dcxq3651903wwzr7bww8c4wd8h5h7rklnqfgklqpss0psx59d2w"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + katdetectr = derive2 { name="katdetectr"; version="1.0.0"; sha256="15mbn0n2g58jfmvwaczd34fhhd1bj9sd7kd9bnvb0y89i8f7k1d7"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.32.0"; sha256="0cry6mb4k128afl7r2jld1g7nl12qvihn59j7867v4k70ia33lxz"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.50.0"; sha256="1znc7lw6dh5yb94fcx46l2lvbnxki0pilcamzmjc5x8r2bhvjrrr"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kissDE = derive2 { name="kissDE"; version="1.18.0"; sha256="0yrpz3sq6acx2200malb05b4wcw4p1vf8wlyc3dgswnqi61wgpnl"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; + lapmix = derive2 { name="lapmix"; version="1.64.0"; sha256="0rhdzvbhsvnhlqd1bkbi9p8fqpc0lvm6jw4923dlmv68lxlfy9sb"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.28.0"; sha256="0i8v4wfp207f5dpf3y2n8fqn7mc4khj92gb209vzc3y3kbwp2c6n"; depends=[BiocGenerics httr Matrix rlang]; }; + lefser = derive2 { name="lefser"; version="1.8.0"; sha256="07bymf3gzb74d8m9ddsz1vjdg1f1a1j41nqpn6iz7mqkf83dh46c"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; + les = derive2 { name="les"; version="1.48.0"; sha256="0rsg0q437sm33byg3ksvckmparym9k168vm9jicf0q92g4cq146m"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.16.0"; sha256="13adc39arg071hjw84lawr8rabfz1v7c6cjcbidsw6mz470x0v8h"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="1.28.0"; sha256="1l3ip0bsvbz9nagzv47qjh5hf7qf8ffk4hlnkwagngiwyq84vyp1"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.54.0"; sha256="1jy75nbkhl0kgv4gw88acx58r9f1kywrd36405x6g05xy05bprma"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.74.0"; sha256="0ff4k88szb4bfjgcflq9jls4wlchw0izr0ibjb8hrmz877w6370f"; depends=[limma R2HTML tkrplot xtable]; }; + lineagespot = derive2 { name="lineagespot"; version="1.2.0"; sha256="13h6xxdmsgb6gxqdwzr544758y8plsm934rk81p1fzw94xs4hk1d"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; + lionessR = derive2 { name="lionessR"; version="1.12.0"; sha256="1gih08dd35rmmynwwr86szfb5ygcsf1jh077nsf048x6xfaq4wp1"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.12.0"; sha256="1kr7s5lq8l25c7c1qarpj879l2l93bc9677yjkb0xgwi8h8zkwnn"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.6.1"; sha256="1p0q6bfkw53qhqw9zqh1avcw0yf3pskqr0iqzcyhwq4vnf59clw2"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spicyR SummarizedExperiment tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.40.0"; sha256="13nyndbmxmyyrs84fpgnak6zxikrhzbmkaykiffr7khpknszx388"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.18.0"; sha256="1l9mv3cg08wqi81m4clz3y7yr4l38s44s384gl2hcw64xp55ar3g"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.18.0"; sha256="17sy0bkcwxqlxrl44i5ncf203ds5a25d6p23vkkj64fiszkyq8p0"; depends=[LogicReg mcbiopi survival]; }; + logitT = derive2 { name="logitT"; version="1.56.0"; sha256="1mi2psbmz1cd5ms084wpljiv8kh1fdpwkaasj1j4axcw5wds7bqd"; depends=[affy]; }; + lpNet = derive2 { name="lpNet"; version="2.30.0"; sha256="148kvxav3mqxa7z6m8wp8qxlv1w7ladw7za1d7qaly7hbpll21yy"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.26.1"; sha256="02lyi2ijzd204rnd4xm3jh3d2a7d634abivjz3p7l5in8phx1mpw"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.50.0"; sha256="1091458is69dxnjrcd11czqy55c68sdnkrmpvlm6hw2cbghs2bjq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.4.0"; sha256="093fz8yh5hd478q4hvgmpi5kbjbh820mmjvx108n2lic6pp3j285"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.52.0"; sha256="18nzcglzh97g7hxbphn0gl1k8q1fp0055djrw10vq9rxc5sqx9s0"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.18.0"; sha256="1j5kyjm2llwqvf63ah65hjci56xhjhsvjw77ra9k6fiyz7phfli2"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.68.0"; sha256="07z6amr19dg2i5zvz86xs7f5nk82b5qj9slv69r9pbiifn6pci9d"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.36.0"; sha256="0kbpckkm29x6n29a4jgb3l7bip5smrkl2jrqv5iix8d6lm21pq1s"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.70.0"; sha256="048h2n50fjr1sxm6ls4d7g5jwhdlb65admnvwvdrzhs788vi0hx0"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.68.0"; sha256="0i2nx81m8q4561w240i36cg80l0x2ag0ivz1qw6anj6z4rbxx7ih"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.72.0"; sha256="11sjkk5d0r9fhxjmv4m078dyy4zb7nn7zbasn7fa16g37xyhrbb6"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.72.0"; sha256="0ylcigzbahic99afqk1q29d4wczmsqmp2hasvihcykybb440a6f2"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.14.0"; sha256="1f1r0frikaj6aw137dk523gagkxdygg7gzc3pd303ds5cqynwiqx"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; + magrene = derive2 { name="magrene"; version="1.0.0"; sha256="1r7pri63lwr7hkqn2wkz782sgnx1v7z0fkd5x6yim141hm1y9xii"; depends=[BiocParallel]; }; + maigesPack = derive2 { name="maigesPack"; version="1.62.0"; sha256="0bl6g2aqyq1yh6v42y8jyqxz6lprkizaxm423ll5cmmw77lh82x0"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.74.0"; sha256="0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.22.0"; sha256="0an5ylv1pjgqfaj8ic35l1f4bp12lbr1h7rx2n0qwgms2wkc80zg"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + marr = derive2 { name="marr"; version="1.8.0"; sha256="1v1mpqvhivirsy1f6zhb0n69zjvad5saw892psh8v5n8nyywi0kr"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.76.0"; sha256="1bad4cjxv22h6vxxn86mxp7xvxhhzj81pikxq3h3hc2a858qfkgs"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.18.0"; sha256="0ix29f7qx3lxg338jb5sc6kdil4cpd6i9a77n4zjk87n8xp6dhbs"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.16.0"; sha256="1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.42.0"; sha256="0mp0wcpki7nh0i5vgzv9fvqmxwb2bn9rjszk4swg4zhgh37iids5"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.34.0"; sha256="1dxhp4pykq9ghqsnm1ylz3j3rvyglkjpbam9ngcsqa2jj0jh5cym"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.40.0"; sha256="0s7pmrbbzy87xf2596m6ix14p02dfr8db0jgx5vzidfvplh7rwsx"; depends=[]; }; + matter = derive2 { name="matter"; version="2.0.1"; sha256="0vbc6fj3is3iv2w5fdd2vdw6lr6kz3fq5d4mpg3skfcnndnb7l2j"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbOmic = derive2 { name="mbOmic"; version="1.2.0"; sha256="01zn60gqbzq3c4nzfdk2dhj515qlill9cs5n8lba9553j0sg739q"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.14.0"; sha256="1ghv2j88p3sppqph3wxpm8z84nw7bi4idkn11wf806d8h1krfjm7"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.18.0"; sha256="0z7d08kzqxabmd1anqa8k5rljz0mhwy1wzk5cghr770492ax9yap"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.60.0"; sha256="1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.8.0"; sha256="1krk5iqqzkkkxfgsvi9j6mj14i2rzisrrq0xmxjsrkgfh19awhr8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.6.0"; sha256="0480pq3n99r6h7gvhw30j4ql259q8jq88lzjb6ik69g5xlgdrg68"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.24.0"; sha256="1qdzjyh6jj8jr74xjpqdfyak0alx6n7bi3zp0sjblmlzd5mydk53"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.4.0"; sha256="14kdb9wa99pb9jbsnhz86a5ajp6vwaqkkkj3x63ng0wl4pyh90lx"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.34.0"; sha256="1pa8xl98xzadzh2q8y4j446947lapxyz2aijx8xp3dv62i5cbv0p"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.26.0"; sha256="1jvzp9fzggvavg4jbmmyb6cibgll0yglmc3nsfgygsh7z20yss36"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.34.0"; sha256="113w3zk32xg0f8ik09w8wl5zr02wmfkp05nqgp8615j7kqrnr91d"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.38.0"; sha256="0bfsmsy1zpzrmah6y52yb3g2qy8c30s74l9w98rrisq0jfhldvdp"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.8.0"; sha256="1s9vccbd2abaz2dsg7gm0amdvwb5iildz0pavfhhssl0np07h9rf"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabinR = derive2 { name="metabinR"; version="1.0.0"; sha256="1qyy2l5y18v1jg54lk7sv9f1wcmrzbff4yk921m9gn4jcxdn59l9"; depends=[rJava]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.8.0"; sha256="02azijq6hq4141zh8nls1xg5h1hlgyb130b6l47966pn1drm5q9l"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.32.0"; sha256="0b01h0dd1hnlnx89i347rca032lk48d49xfb03r15di1gcwwrw5q"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.30.0"; sha256="09z4hgcp7lnybv4hq2dybc8zq6mwndls7p8y30lzb6rw2fryhkhq"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; + metagene2 = derive2 { name="metagene2"; version="1.14.0"; sha256="12knh4bri4j5sf12wf129kg484xbc37hkfkyw39rkz2arx465giw"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.40.0"; sha256="01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.56.0"; sha256="1fyphlk6v5va7yr7ihb4yman0sd3jywscqx6an6zv1jkwvp9hpd1"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.6.0"; sha256="06ala1qz9bfq7nnj92m0c5r85kk7h4zrljjh0hgrap5sjlsm09bb"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.4.0"; sha256="13fnh1n2ydykkvpj9s9xvikfgahsi827rmwzb4zyk9h2g4dx5jk2"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.10.0"; sha256="0m5dyg0gsvif02mgz0mcdk8annmqy4a6s5ldk3d9hjjzcgchpkpv"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; + metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.20.0"; sha256="1mkh8j1kccc95r1xj77hkpal0zdj0g923p8xr7vm1rxz98fpw30n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.20.0"; sha256="0pksjz8i42wvg830rlwyfk5wv0mymnxpv65swjgbkxhd1hx0s1nf"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.12.0"; sha256="08p6zq9pbqa21awgm7qfxwb81600i9c1af536zwp4a8fqn7vphhs"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.12.0"; sha256="0m0zs1nj2xmslfj35khmyy5nzrq49q5mpyv9ymq07wja54qpxx5l"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.16.0"; sha256="1xzgv5r62pbn9y7bc2rih5073n4qzx9fhkvja2pr0irlx2jr4arm"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.22.0"; sha256="0rf6gw8b4v20q9lhzgxskyxga9iszfgdvgdhs53x0xkfa2sagddr"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.24.0"; sha256="0w6wv8x1jggbvymb07b2z47myf239mwpwbgz5p5yi60qb0k7p2q9"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.36.0"; sha256="0mj34ch1k216k42qj9wyf5yshl1qjb6hvpxs5y2rk21w6dwziklk"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.32.0"; sha256="1za6f3y5mfgk8pfsv487q1xbigrv85vs0q1j71zcbc3lminsfzyp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.10.0"; sha256="1yg9lkgqgdlb5d8wiprnilw4nmwgq1nsz2p8v5zm09sfyvkl05gx"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylclock = derive2 { name="methylclock"; version="1.4.0"; sha256="0pzpxdm3z6payp5mh45a939zk4kqg08rkm4c96ryd2j7a4yvk55q"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.6.0"; sha256="08lrc54safmb9ygg4vpqjfn5ycps19j7gbgi3rjcjzc7qv6zgjwp"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.44.0"; sha256="07kfyv3kkayzh0akxfl3p9gckw8qiplkxbyxw8npc7cb03ihgmc4"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.20.0"; sha256="0xrgl1nzyvwm34249ijw0ld4dkz0001ck8cv780yx2dk92lp9ky2"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.46.0"; sha256="1h559i80hd8ajvimj3qs9c2yayl4cz8kr7irn4184wcql61dq5md"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.6.0"; sha256="1fy4iqm5frmnrlmcpikhrvr59hv2cbsrgrn6xkcq9jxcwnm7zxnz"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.22.0"; sha256="1srx066gsqcngngjpac29wnqf4n5r297h5wbbgjdvkkvyc7fhvwy"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.28.0"; sha256="1fj8vgwym7w65z84w043v75j0cn6nb882sk91mdmp1q0xwmn4jq0"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.26.0"; sha256="0wvz9gz7zh5qzf146hz788rc289mb22bi78ffjh8xmyfhc3jxmpj"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.58.0"; sha256="0h6q3p29pvzfk8ggb97akbh0lmawypwp9rs4bmnj52599ws4x3n1"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.32.0"; sha256="05pxcqaw7hkfchmy8m6ywrblh3kj2zwargrw1v969af24lgaa3fa"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="1.16.0"; sha256="153bdgwkqkcidvracjwxa249j6nl2fbsdg9wabnjd67qph8sa8rn"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.28.0"; sha256="1xnw6gv6h0b7fzmcirwdkp6hn33wc8k1dify5xy6r17sgfy51xm9"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.20.0"; sha256="1mn9cjx6hqgqsmjg3rjkdyfs0d4ji12k5s2mw2rc87bwcl3d0rai"; depends=[SummarizedExperiment]; }; + miRspongeR = derive2 { name="miRspongeR"; version="2.2.0"; sha256="0nm4zzwpl4xzrc2v3br7963w2mfmlsg32pr4j4qqf090gjqj2k3k"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; + mia = derive2 { name="mia"; version="1.6.0"; sha256="0yz88ggv6d5rccdwzixwg9y1bc4xysazlmv1ph88wxs8r6fcmync"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.4.0"; sha256="01rvvjm6q1b7pdi89jvlhiqv70rms128f08frhvfxj6m4wr432hj"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.6.0"; sha256="18gp77islzfy1ll7yxk3l8l1q8kj4hxj0qns6mk9i0pb1vqs1lk7"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.56.0"; sha256="002wagng2zqa2cl8140im2fzbic6mqr2mp6qbaqk5ary5m8c0bkq"; depends=[Biostrings]; }; + microbiome = derive2 { name="microbiome"; version="1.20.0"; sha256="1j3lrrz6yxfzsr037c0bbdhrs0ll7jg0mpcvk3iqdryi5rysnx0x"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.12.0"; sha256="0gfldxhrz70drr9g4g1bpk0ncazldyc32z9by0ri881hyqah3d9x"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.8.0"; sha256="1y9n12vmqr1l7c33smfl0wm33nzww84593y6azbhyj0sl50gk4a2"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.4.0"; sha256="022hzblxs2b3vlj3d9xicqyap8gr5r0dk29wz2n09d759aawc0nr"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.6.0"; sha256="0j4sw8vbkksgm4g2wlzyanvmin7izv7209kqk3nnyx1g2crgh5ki"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="1.6.0"; sha256="07p9rs1jmgxqaahjbrnvvs94c142n2qfw8ip3qqkr6mhzwr19ly3"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.22.0"; sha256="1q11i2k78nk8nga0sy4zps86i5n650km8v9h4yz12k12akwwp156"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.6.0"; sha256="0w2m191lxy34c22qbds00g4advczzic4rvq6g78lmbpmf8xzj5sx"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.56.0"; sha256="1xknyc2m03dyqrnx6np2y2lr41w06arl114f6cncl6wsnanqxzrz"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.44.0"; sha256="15989zilgy2j4k4nw046qg8wli7ynjh2b1yzfv7cwgn87mp618lc"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.28.0"; sha256="0662jsrw745973kf3f95l3n6i5s9h2nk2ap6alv8sb5rkykva2in"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.6.0"; sha256="07lfh8c7ks9lbnskvqjhjrssp0wk1kpp7mbh7c7cg6q1kxcxpqyx"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; }; + missMethyl = derive2 { name="missMethyl"; version="1.32.0"; sha256="10r3yvamkd1h291lmbas66mshrmy7djkz6pldh8lpqngm0rpgdr6"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.18.0"; sha256="0kwbmhz80an07fcp6skv4bik0ncszxcllfi7jv9h0k814qciij0y"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.6.0"; sha256="1fyzxswad1naa86647szqwsf0m929l3l3c00v5y28cpfz20qzlr5"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; + mitch = derive2 { name="mitch"; version="1.10.0"; sha256="174hiq8xzbvdkfxdgm742sjs7qcmnkb9shcid1p8x8ci6fk9vs61"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.4.0"; sha256="07yi1pz05na7w4ppp0kcrylny4p1ca9w1rxwmph70i81paf5kpfn"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.22.0"; sha256="0w6shihvnvkjycba1hy8drd8wcxxcl2rimkrb4vdl8aygdifrarx"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.14.0"; sha256="1midn7hqi037fwk3pxrzlc0a7fgs0ylxpd312ghjb45g1anxdc0s"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.6.0"; sha256="0cj9ym1iw4xpc9nmswhv9pnd2yr5mqmjzs43y7dd0c6x5nq90l13"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mogsa = derive2 { name="mogsa"; version="1.32.0"; sha256="1qr8ncs2993pz80idbz2paappn0pw0akjv25zkqc084bm74q0qb9"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.4.0"; sha256="1hljdgb7cjhcjvjl4ffwjsn0har7p7rhg07320575s738pzm3wj3"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.26.0"; sha256="1d3xgh9xgqa28bgyd06zkjmg75lq7hdah3d140l1bqq2ii1bv62g"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.36.0"; sha256="146fwpzmri7rlz1rq92xh70wrvmbfa5ysa6gv1akajbchgnrmikq"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.4.0"; sha256="04fdphz8jcmpxql9v496r7xikqhcbm1kn8a9j6hav9z4w8slg31l"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + motifStack = derive2 { name="motifStack"; version="1.42.0"; sha256="18gfx5dq83s2ny39a7cgg4r3b05gg9l0kfg83brwrm1cby08jdhm"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.12.0"; sha256="0lq79as9gb48hf3v2xj895s0nsjr37fqah4p405kdybzry56gvrq"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.22.0"; sha256="0vsjnp19c8wscb3n2wkqvmssx052fr8wcfb6y67393mq1pqa719m"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.20.0"; sha256="01k2ngf4nj2cazb3a2c96by86xwdkdngzwhb73n2wadibamnqnfv"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.20.0"; sha256="04pqnpsdak6yqmd99bfkild15s6szlwy86dxlnbd1fxvpyarfnf9"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.8.0"; sha256="0mlybbrs6k5z41lhd3pvmvakqd1d1pkrvf0jkrbdwzs9grb5d4nn"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.24.0"; sha256="1w998i5lv1c2485cmdzk31inykhl64s7njaj725cs1r3gzi4l7h4"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.30.1"; sha256="064hmry0zhmpchxgjsw0krsybr9v9gbsz26zmj2a39pg1nggwbq4"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.22.0"; sha256="0g6d0gx5af61svxjdzx438vz24sd81qml7f755kq8nrr89pacvh0"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + mslp = derive2 { name="mslp"; version="1.0.1"; sha256="01w9lzfl1vci4z63yzcjk9fn7yzkcxiw6ms528qbg3nmfq08kx5a"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.36.0"; sha256="17xklsg483zd205q5hyxy6b3cgrb53pplb1wc7pmv5638y7nsq2v"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.36.0"; sha256="10frsvqhi3i0v2w4q4q9xz1ykyf6s3nrjlmn94x3kd06p3s839k3"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.6.0"; sha256="1namy5kjxw963aywynyqqg0d0fzjdx5hxszah7765d10r3hhk0l7"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.28.0"; sha256="0mw48jm154c0k9nhal56xc4jv0n3ms0s1770g2i2lxkr37905swq"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.8.0"; sha256="0ynjagm3djfvg69lwbhsl896wv46mkr6x7m8f28c8a9v42xrw4pk"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.16.0"; sha256="0mwb61c6yqq1frnsgp3nafmlrl1zi8sxckp5yw7z083805y3fbyr"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.20.0"; sha256="1zfjr1cw1qpi70wxrkw32y3dmwhbsdzd2522cgkj4x97g4d5cn99"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.22.0"; sha256="0g28ksb9vf2lpv15s9s64nnz6smhxrf9cbsw4kba0dlyrrzzha4a"; depends=[doParallel foreach SummarizedExperiment]; }; + multiSight = derive2 { name="multiSight"; version="1.6.0"; sha256="1rpikqpg6y2dzgfb3wz92cf45kbvcd4izybkil54gls7wvq0a79i"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; + multicrispr = derive2 { name="multicrispr"; version="1.8.0"; sha256="17b2c387f7xb8gcsbxqks9j7jr2yi1hysrjdl1vqxzwlzzz7v4az"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.58.0"; sha256="1fj9fap9nz3cr9hvdhjnw4qbv684vsqjaf29sjcjvsay5f919gfy"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.54.0"; sha256="0ciz0fl0pzm4hjqw8af32s540lwjbkwvwnzgbfwadax40hgjs0g7"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.6.0"; sha256="0g0597dlzc1z4giq3qn9cy9hm1fywf5qv33lnac4zwb2hvg4qc42"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.12.0"; sha256="07b1z8rd0zibmv3rm4zggjf49lh37p2bp1h919zcw3n0fy2hax1k"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.40.0"; sha256="14dqhmvfdcm8fn27ih5q654rla4qgikj4761lhhnhzyvhqvnmglk"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.8.0"; sha256="1l45jkhjciwvpy86c5ql3j6s8cm4d8crwdp45gj01xl23x1gkdgf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; + mygene = derive2 { name="mygene"; version="1.34.0"; sha256="1aldf0x5vivjbhp169chg5k3fq5r41fiykxii8f7z580h3spmapm"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.28.0"; sha256="14p8x89ff9j4qzq4mghnxiwk6hac22hrq0zsvj2918srmwx18cjr"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.36.0"; sha256="0h5w5ykbziaif6m61pa5x92f2rblfgldvj9vajfhkmxj1b2ks9za"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.32.0"; sha256="0p7mkvvaf25si95lpwpr65jm3dzxmgs9i0wilyb2mbxkdcz9vm71"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.14.0"; sha256="1lb9jn0wi1rn3dcgc5b5fg3xvpm8dcws3ryxb29nvxjhiy7ry90z"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; + ncGTW = derive2 { name="ncGTW"; version="1.12.0"; sha256="0jxchaq442kmprz65pv43xjj4cwv29aq28jz8l3ih70k873g8ap9"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.8.0"; sha256="0mbf3x2bf1qk2y7a0xjyvlj591b5dcl51f21vvkb0ikdm3bjiqz5"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.44.0"; sha256="0ak1rrd0r899nz4zdg9v3pkvlp94sbcc3q6xl249krgbx0a3sizm"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.20.1"; sha256="0m6p9h431xdb0r6q1xsqkdmm7cwrpdizlcisz30dl6f7nlm5pjyv"; depends=[httr jsonlite plyr RCX tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.8.0"; sha256="17fwk2863jb0y980y7f1in04x8529is6bvr2bymnsg7kkk1spvv6"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.6.0"; sha256="0x15n5k9jbimg6rljj028dnmnymj9g8ylrds58sa7yxpp0aa9gyl"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.9.0"; sha256="1k6grq4gxr507m43x1srszbic4chvj9qba52h6gdgmpmimfyg5bm"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netOmics = derive2 { name="netOmics"; version="1.4.0"; sha256="0fpnydck4vqly14y718bm823b5lxn71k1df60vjfcg9ymxk8qz5z"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; + netSmooth = derive2 { name="netSmooth"; version="1.18.0"; sha256="1vivvzv4bl0i5y7mg1dm1rp87vch3k6byrapif3nwzj02f2fwriq"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netZooR = derive2 { name="netZooR"; version="1.2.0"; sha256="00drgnk8fvjfsbmlj8nh20yvly4z0a0xfsxxcany2kygi8r1yq7h"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; + netbiov = derive2 { name="netbiov"; version="1.31.0"; sha256="0ldpbq8d7hq6sa5qcc5qh23plczg35170v3fifyz6a47vghr5ff9"; depends=[igraph]; }; + netboost = derive2 { name="netboost"; version="2.6.0"; sha256="16af13gzzgs9250jxs4w6vnv79fvqgh5v8db6skfccnnq6x2v1md"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; + nethet = derive2 { name="nethet"; version="1.30.0"; sha256="0dhyjphj0134kx91ny94g0yd6kbjxb5qlbrds2z31bgxcxpms9gb"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.24.0"; sha256="18cmg460hqygxxdsq3d4ns9aqbvj5knh9lv1d45fd3k1k9fhvsql"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.58.0"; sha256="1d1285sgk86yi4sc93dhyizzs1a6333z6kcmpk3a7ki6z27a3jjk"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + ngsReports = derive2 { name="ngsReports"; version="2.0.2"; sha256="0yyqbrykzww68s7f5n7nswfj8lsif5gv6jl1i9fmlklslp9sk997"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nnNorm = derive2 { name="nnNorm"; version="2.62.0"; sha256="0n01vsqhr9pgsyijvlp9k89l7yzs99f4xi1p7i5zmiffd39p013d"; depends=[marray nnet]; }; + nnSVG = derive2 { name="nnSVG"; version="1.2.0"; sha256="1mxsii17msqww37q5zgfmdyd6sv00mn1yz44lqkaa7pbldyhhixk"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + nondetects = derive2 { name="nondetects"; version="2.28.0"; sha256="0n1ikrxz6gr27i86vv0j7x8m63rwl07wn72jzn4p4h1j46fzqdvp"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.26.0"; sha256="1a9q6dwkqg2s5q29rpx9lvhws8hnzdjc8dk6c56mh1q02gpxz8v3"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.24.0"; sha256="1vx9v22am8vc5r9fml1nblm2x64zrifsqxlav9y0af4mbpd76d34"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.34.0"; sha256="014w7f95h44da6c7kwsddzp3wjbfyy3f697wykgz659hv86zdx0h"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.16.1"; sha256="07870x1c6r05difar1vkk92vgkp2d30k29rgf3l8zqc7fbx11mca"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.30.0"; sha256="0j8g0lf6pzqzak259fp6xckgcjrabqgd28bwy9fbx3pd1qj5yrh0"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.26.0"; sha256="0cgljwk9car3s5ncslx0j0bya6hchfv1zk09q8r0y6258mim4qy6"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.4.0"; sha256="01f7x99nzgi0si02p5bsjvf0mybl52kxnkm2j1f1s2rai5srkca4"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; + occugene = derive2 { name="occugene"; version="1.58.0"; sha256="13hv71w25jzlf0fs5wx400m1zh4l4vxlvv42vidiyggj894ky5a3"; depends=[]; }; + octad = derive2 { name="octad"; version="1.0.0"; sha256="0qa407rhi9z1n2hif40j27vbfsy222wi2hh26qn4s0s7f2fnfyfl"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; + odseq = derive2 { name="odseq"; version="1.26.0"; sha256="0p51lay3xasqg55j99gdx1gpk93p4m2czvbw912h559v2s4hnzqq"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.62.0"; sha256="0l6yb58frh4c080k6h8wyipc5kiz4qi7jimnr62jg8d737rrvnk2"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.60.0"; sha256="1ik9xfx6g4gf54hm5f5prip1iz6694czpbhlgwd3p9qh8ddndgp8"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omada = derive2 { name="omada"; version="1.0.0"; sha256="1p9nywbh81d91cah8in5aa4say3zd9159f266k8qbk1psy93zz07"; depends=[clusterCrit clValid diceR dplyr fpc ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.20.0"; sha256="13xgp6hnn9py8400k1411fyzlxskdlams2x0p7skn44219iqpqwj"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.38.0"; sha256="1w9fsg0r6ir9nmmpf08b1mh8mnrzxk3f398y1w5dg34fdz4phgpg"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.18.0"; sha256="1h3r0lhkaqhl6cc05m4qjwl3hyz8ayig6xmj1jqi1kcm291js54c"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.18.0"; sha256="0zjidzy0nd9pb8f704xasm2nindaz953pmmv86c9fq0dmcv63wz4"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicsViewer = derive2 { name="omicsViewer"; version="1.2.0"; sha256="1di3wyf6nzl39shbqmcxjr2kxmn7gghh0z977ax6lfzzwmqvqgzr"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; + ompBAM = derive2 { name="ompBAM"; version="1.2.0"; sha256="0kfym9xlhjqrlcdzpvl0533f7pgyffgb4adwda6wiyq3mbyag5l6"; depends=[Rcpp zlibbioc]; }; + oncomix = derive2 { name="oncomix"; version="1.20.0"; sha256="0mdjyq2awrvh0r5sivb5zk0zg13100am8dd6r2bvw8nhn1ns5xby"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oncoscanR = derive2 { name="oncoscanR"; version="1.0.0"; sha256="05rnw08rc9x65rgkw553szjjwqx0b9i6brg7hc0x8r180il22z9k"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.6.0"; sha256="0a66qyhd22vkn58m844fm8y22pv5s52r2hivvq0d9sqns7f8q286"; depends=[progress Rcpp RcppProgress]; }; + ontoProc = derive2 { name="ontoProc"; version="1.20.0"; sha256="1p7849msd9181f3y20n67rac5dbbq5a7z9cggw8y4yh4a9zjz4r0"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; + openCyto = derive2 { name="openCyto"; version="2.10.1"; sha256="16wsa9dhnz8gz1siyhfxvnbfg142g7fmhxiqxr7n69qpq9w8yhr0"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.20.0"; sha256="0vc9fj4qz741px820m4yzl0nmfszb9pp8jz0mgm0bn8rypibhs1c"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.20.0"; sha256="0m98qwpb84bs0qfk17ibbxkjnknnqlkb21hmhqkjnd3hxrk615zc"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.16.0"; sha256="0czk9bgi381vxa4n8hqamsq7aih26xi8wg3j8c1f2wlxhg6ha5ka"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.26.0"; sha256="1ikivqi8dw8dsfbv115g79j7pkk37dxw2bwfdk0bmn0y1qnwr60l"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.12.0"; sha256="0v3fahv6miy3zgaypmnp1f1b84l5zz3s3spimhxl1jbm26safj13"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.10.0"; sha256="1g47mw0i2gn08f4j7fb190jgb5ap02vaxgs615wnihrnljsihiky"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.4.1"; sha256="1bg73n1z0v5py2w5rdvy49793v4l820fwrjd7gsdi8vf5z06hq52"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; + pRoloc = derive2 { name="pRoloc"; version="1.38.0"; sha256="1rcvqcvvsp0ml6w86n794yw31sxqcwypjr5fb6slkm7bpql1gzij"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.8.0"; sha256="0s6pyim5b3qm12ig8amkrf0r5clpk6021b08iw9jfc60qg68hmr2"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.10.0"; sha256="1vg5pmra6l75qx8q4pcvfxiz8rcagh9syca5r5xbzi1gwrj4mgvs"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.8.0"; sha256="02i67ck4wnb7jp88bwnx763ijk7ayk69jrr0n0vzfgr408zvv4ir"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.8.0"; sha256="00irmzaj7d2hdyc3lf1n2rpl7adsff4hjxxxc0ln1h2lbwhzbm90"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.36.0"; sha256="1nrxn494is198j1yc3janhf8d1vh772k5k5x3qfs75wcz1vwcihh"; depends=[Rgraphviz]; }; + pairkat = derive2 { name="pairkat"; version="1.4.0"; sha256="19z3ymlm93rl9fqcax9m4l7hayqp4vm38lcw9kk3k9pya2yrv8ry"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.30.0"; sha256="057hcmgzcp15l8ylgw1rjh5vldsdz6wvf78q3j2m32iw2xrma262"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.20.0"; sha256="1wr6sxky839plyshd4yqfsj08v1vqfk0g1z0wbb645n8cn43zawn"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.68.0"; sha256="17jci5fikyjwkd9h9rysiag8zkzckw3w0z3rxkv6gvazlmiqnyrn"; depends=[affy Biobase]; }; + pareg = derive2 { name="pareg"; version="1.2.0"; sha256="1b5ymhnznjx00vf4y09y2fw75czsd6g75bin4f6h33lpidl8z38x"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; }; + parglms = derive2 { name="parglms"; version="1.30.0"; sha256="1c4lhc1ixb765rqkshzlnjqbfx9smqgn40lnizhg84624jcbfmxc"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.56.0"; sha256="12i5g4ai7a0p81kvqvz1qw099cy3g71n69pij8w760r3jn0c9ilw"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.66.0"; sha256="08g645cjzm4ayj7bxsdlh776h4yg761iqbqs1xzh7ifim6ibzh6f"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.28.0"; sha256="1ygydyynfj5bqjkrrikxxqhj4bvnrif1hy0csfhm9dj19rwb891n"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.36.0"; sha256="158dblhgx10wi78k8y48g9x7rw70pydc6bjrx65nzkl1h6i4km9s"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.38.0"; sha256="0p7cdq03863zpw009prs1yh3gps1kw135anjfq6wpdkwza7xy4py"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.14.0"; sha256="1ss71zs4jshvl3i2li0jfny5xr4lq9p25hbcm1kznpx3l9g9lklj"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.32.0"; sha256="02cwf2sypdf4fiyns1vfqy3djn6plq9w0zsisl2xlyrln7apmsl1"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.24.0"; sha256="0gs4az4h5mwnr3s8fq7im5p3mm4mhc0x5amjr2badqkw1fih3jp7"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.90.0"; sha256="1cjmkfpbbfzkx6bi3r9jjx54iwkm4gl8hqa1776hxicq2x2c83s4"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.20.0"; sha256="04h3nmm3xmzlgzqm6wnlw4mzhazy0ngbif9w35y9caazf2d0f7k8"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.62.0"; sha256="06gplxjpkv9hkcvf536hr3w5fj3gfdc3klfxf7d15ivy4szr0nm5"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.12.2"; sha256="0fdpg17m4dsq53nynbqw08i3qiplvsm0bzaj6bcslr5rc2psnpxy"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; + peco = derive2 { name="peco"; version="1.10.0"; sha256="1pmq3rag4qn62yicrafl5yrkhqb383iz5jv5d6v9fsf4jjs1048j"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.4.0"; sha256="1cmpwdq1b5sz1nwvzh25xmv5x37dcnhxz5i7fwjyqa9my2m0r6is"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.32.0"; sha256="06m1ny2wa41sfaz9inmj2wi58j6qd49ncd9yx79hkrh3zymz0fc4"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.32.0"; sha256="13bwyxlf8nx86ldzj01qlfba6yh75pzb1kjkpi7p7hs1b0yvb5xp"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.8.0"; sha256="03wdxbgsrj2c7j3fgxigjbq349y5c8cw80xvb5ja7lbi1isfb785"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + pgca = derive2 { name="pgca"; version="1.22.0"; sha256="0bcq1qks87jjgd2bwpds6xvcvidcvl9pq53mi0dafihgd0s2ycfn"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.18.2"; sha256="05js71pilnkkdycir1v46rf5l9vgkqnijavbm99csrqzr5dgwgrx"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phenoTest = derive2 { name="phenoTest"; version="1.46.0"; sha256="0rcgbnqglfs9asyrssnhy7h99kikmnr7s1827y8q2agq3pl96q13"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenomis = derive2 { name="phenomis"; version="1.0.2"; sha256="15lk3wapaaqqrlp02b2cvdlx8dgcvc3vjsfv8i70qh89rljialf8"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; + phenopath = derive2 { name="phenopath"; version="1.22.0"; sha256="0p2lh858ykhqz0zj4h1vmjd27szwkrlswanapz4shhmvb4plrlbv"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.24.0"; sha256="0k93rl2wm9hzp9bcq2v35hn1p4wy8xarb5rzl92wa5w3fj0j4nlw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.22.0"; sha256="1gap3ihi1xymfp3nymxss4fnhyrpzbva29ki6wdrsizr188d7b0k"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.42.0"; sha256="07zi059v6zwrm31qwc7fmg35fwqlqfb6c30wwj9q4m2y67srnskk"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.14.0"; sha256="10bq5k93gx35ysi7ja3821scrn455cyy8syc6aivaz00hcf7mzd8"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.70.0"; sha256="0f6p41ryssw50il1hys6nhm818yzm4ppbksqm0mm7v6knk0mywzi"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.8.0"; sha256="1nkfhza6nn0gzlfpg0c24rysz43vkx9syaccsrsn3a9i3vm76jh5"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.14.0"; sha256="1wa06z8q7cxjaaq6fjvs69hd1yrl8s0gjn0733drrwsvsclp43ay"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; }; + planet = derive2 { name="planet"; version="1.6.0"; sha256="0260kdkambx29bl449a8ydysw99gq5pydaj8dq9bpn7p9rqd29xs"; depends=[dplyr magrittr tibble]; }; + plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.70.0"; sha256="0hnhfdrlg4907dc4s17cy4kgmq5nr616f1wi7jn72acxwqfl4bk8"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.68.0"; sha256="116d55v0jwlb11imac8swi7l4prn829sq2jvr1iqsijb7vqlvqli"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.16.0"; sha256="19d4rgrvk96fm1w0iqx0nyfxgxkwh6xmvgw8bxj7rf8z5qmin9hm"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.4.2"; sha256="0c9n5hj3ib3nz3qc8jb2hvbl72c5pjpiny9hrygcw52aikj2wwjy"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plyranges = derive2 { name="plyranges"; version="1.18.0"; sha256="0lz43rwj7198s80lj2xk4r3dn3l1cpwxwvln5wz19l9131d8hclv"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.30.0"; sha256="1yma0zpas34wh8axmq3q8hv3gp5vq9zsjvkbmzqd8mnvmkd4pbkg"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.10.0"; sha256="10307945brcglm0c3ixbbn0icvb9aaclj0fvp1v56c9p2820j4ix"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.30.0"; sha256="0nd32qksdja1p1q7qcn87l4fyd7cqr8n6zgdqhhl811ag9pviizr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.18.0"; sha256="12z4nw4by4ms86m5n92p2a13b8pm88xrg34159pa4qpn874y4g91"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.34.0"; sha256="16wa4ylipkpk6a1vyaiic1vs73x0xif7ik1w5rrh9mkr16lbdixs"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.18.0"; sha256="1d4wcvhkzzvm4g6v70dfx29iwrlry44bymprwir77y2dbwwr142f"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.6.0"; sha256="1qywxjk2m8hxazw0238pdwzw2c6p7vhzx1m6bs3dkzn09jwpgav2"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.14.0"; sha256="116rzlhgyndnx9vylbiw2qgjns58gdzxc6bnxq0n6j81q3ny4a2k"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.14.0"; sha256="0jxsd9wydj0y5zyfdglh2ik8ba9mzc5y6qw4lpqqwsd0wc99bi94"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.38.0"; sha256="0s0ci8dn53b2h9z4vxbwaz58yj8w4s5kzjl5i516gzmhh6s1ss3g"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.8.0"; sha256="002pnnbllb4bnaf1h1giavs4fbwhc7bdf5202nk734c08si33fi8"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.60.0"; sha256="1l0m591scln024jdpib47fndhx2wfp9jgkj3mdmwd9nkc5y0qjda"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.16.0"; sha256="00h9m37ga3wsbcafg4c338457xqjlmgmhhkcrvm38x39h20kxrqy"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.8.0"; sha256="150n6nglbji1510g6kkq6b7i0nix70c6zahdrr4a6p1dpg15gfgv"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; + proBAMr = derive2 { name="proBAMr"; version="1.32.0"; sha256="1pn48pmiz6cgc3hjczhpzgld69my7xk37d1k7k37gm0dwzpd85c3"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proBatch = derive2 { name="proBatch"; version="1.13.0"; sha256="1z55rbgjzxkj0i9gwwbh3wa82w9xflnipkkx58bgnni1nfnbia9k"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; + proDA = derive2 { name="proDA"; version="1.12.0"; sha256="1b1p8sh80x5967rakyq75cj0sz01303w7p05b9irfr69yvfvlj45"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + proFIA = derive2 { name="proFIA"; version="1.23.0"; sha256="0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + procoil = derive2 { name="procoil"; version="2.26.0"; sha256="1ncls2bgdaaq1kc728p5ay95ypm5byyhpzjck34hfpq867lp7x7m"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.26.0"; sha256="0bc2y8xy4nfainz7s2phmhmdpii1ws7k4cylvqjmr52fnssnxyl3"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.14.0"; sha256="1gd231y73ms8n6vyqwwfxl1fm7428amay5lc8ws7ap6q0wlal03a"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.20.0"; sha256="0f5sfi9r9dr6w3xmspsbzby8dpza8x7djif7p2h6l99kwkf68jsb"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; + projectR = derive2 { name="projectR"; version="1.14.0"; sha256="08abn5ghixlj4sw8ibfnd9ngs0kvgyc8g7p54wm8q1k45vknvszm"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; + protGear = derive2 { name="protGear"; version="1.2.0"; sha256="0vk1h7zp9hvzilvwdq4346d55axcwbsvjp3vpzwnsjdidszs7q7r"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; + proteasy = derive2 { name="proteasy"; version="1.0.0"; sha256="186g1g5c4i1pdgqc1nwdxlm1nwzggvqswa0ny0195kgqd5ifw5j4"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.38.0"; sha256="0a4nwd9dabl3l8bx9fq4dfmqnvmhf8lj832kiswbdb0p8q3dhqvb"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.24.0"; sha256="16i4w3f31qj5n0hcqbli65c3hqf8wx8vdc3sa1axjazrdbjj02sd"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.30.0"; sha256="00isn3avis6j2hdpamy5ps8lvmv6h93cwaimnvhcvnanb5wwksxr"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.6.0"; sha256="0gmzmqqq9w3a9m3nkiv9j7bhqk7yx3vg9d5cqhr8n64yh97nq06f"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + puma = derive2 { name="puma"; version="3.40.0"; sha256="1wdn5mgfig1pa153j2z6xa1k7qvha84yyyjc5a7yisrfnfrc9lcx"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.46.0"; sha256="0ahcgw6kvkq0lrx4sbv902yz3gdkygxsqkd18kf45r0jzwd92k2s"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.38.0"; sha256="1cpyxgw1ynq3dms5yvcwaqd3s55ky80dgy811nl226mji278v9cl"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.30.0"; sha256="1mklwy9p6miwzvcjzin5q0qcg9625bmbj5hi9dvm6cq48r0x5gwp"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.12.0"; sha256="1y8knyl0axnbidkg1z9n1dmchdb79ixr7d6m1g2zhlzp10kmi4pk"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.16.0"; sha256="18hswwff9smiz9dr28mmh7fh58wknb8cfzxvg5xdw4fw09cb48m9"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.14.0"; sha256="0220r27adgm8mj348602hzgrbj8f94d0xbcrfg9r5sjaajqbmf8w"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.36.0"; sha256="1ab6w3ghalgjarkq91ci85dwpwp1dqdsj2m9adlmx05wpljg9qc4"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qmtools = derive2 { name="qmtools"; version="1.2.0"; sha256="19zn0q493vn45wllzbzqfgnazr5x6ik2hvh7pay3s95421vls1bd"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.56.0"; sha256="0am89s61dzzycnih78ywnp955yn2jw728i2r8f4qb37asjbaf8ah"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.32.0"; sha256="1rzf4r4dfsrcp0flphsd4dc2b2bplkcpnzs1rlvknbmkg2p3hw8j"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.24.0"; sha256="1x3xv6r4qf8c3swycrmh83cigblsg37wjgxlw86gd78a58q84sim"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.14.0"; sha256="0rgwvcydgmbj16bgxrs5yy1i4vikl9pakfdk6jxacr5p85v9ln07"; depends=[Hmisc SummarizedExperiment sva]; }; + qsvaR = derive2 { name="qsvaR"; version="1.2.0"; sha256="1g0ib16vflc3ncc8drq051r33cd0lavn7y7zw1xskmijxqxymkqh"; depends=[ggplot2 SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.6.0"; sha256="0nxr4h3zwbvi80b5snz6diqm68w7dix0zk5p0zqp28nh1l45cl4w"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.32.0"; sha256="0f274wh0w6nyipac05y6s2m2p60vkls5j4fwa5bc419j68h4znnz"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.64.0"; sha256="1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.32.0"; sha256="1k2437hpds42ps3qfj828qv3wxw7w3xkhi6zk7fp24sfbq959nf5"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.30.0"; sha256="1dsia1c9ir989aqrgl5j5v4bysm3pyw9225yrcajiwgl8fxymph4"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.44.0"; sha256="1w2brdw6w3fws6p92k6n9bivzrfwa06iwsdzkliy3z4dn13mc3rv"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.38.0"; sha256="01b5sbh1cdri7fj5ffhmpby3h4qg2lgfyn0jg4zdv8rcj6gagcvw"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.28.0"; sha256="0r4jj34p8qinfsl8yvcyijkrcap2ik5qfdyl43az1x13c57724mk"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.24.0"; sha256="0ghj9712f28y4afgdnpvf11kxi5nghis1rgppx3wfck566yi7s7h"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.46.0"; sha256="070i3jdq8b5w7k42xw2fc3vcmv312i19fa1am4fbk3g3ssnm61p3"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="2.0.2"; sha256="1vmm7s5p8wqz1r8g1hy1l3mra3kkf76qgy5jkf84jxz7pi0clbld"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.4.0"; sha256="0mj9md7cv1i206a0b3pqmkq9frg5k6k22hqjbsmvjvsql3ir9gcl"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.32.0"; sha256="1fpj6syb1k8kababm7bzgkr2qqqx83vnfm9dnr577yfxldbpfjb6"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.10.0"; sha256="16r6qfphaiwjvwmfxbaxdlfmc5bjyx2n7anlsavfgvh00jp31hm2"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.14.0"; sha256="1bk7w1rb87j6c3280r6bwnvfhfzdv0ck9g96y0a8k1g297gvyvcc"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.36.0"; sha256="11dp7vz1343hmaa7lly5m9h9fx94cpqqhsrvbb6vy57bh8nb6v4v"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.36.0"; sha256="1gindmnq5vkapmfjpy9hglbk79g0s1sgzdljmhn3m5925h2al4k0"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.18.0"; sha256="0vk6j07xxkpdaybsiip41xavsiwc8qr165sxab5fy1r13w3ya4d3"; depends=[data_table httr RCurl rjson tidyr XML]; }; + rain = derive2 { name="rain"; version="1.32.0"; sha256="0zlb52z0wk6057ph12lj7313bfkpbn502568cgdwify8s6q9g8ms"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; }; + ramr = derive2 { name="ramr"; version="1.6.0"; sha256="1rn5jvrcl3823124iwwbrjx89yyp3yflhlvjwnf6jldvm5bwqwpz"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.22.0"; sha256="1qrsv88q18aqfgznli3y54n3ml3f3fc888kipdqj1akxj70fxlsm"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.44.0"; sha256="15afb49v7fjhlmnm9g2vnjcql288qsxlc0vyyki4m9w24kn8pvsa"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.10.0"; sha256="1siw6y3izcaw84pccxa1lklcl9y16hay4vn1nippqv47bd1ynawv"; depends=[Rdpack]; }; + rawrr = derive2 { name="rawrr"; version="1.6.0"; sha256="11n29nniqwbbfac05nw72rp6fm2309vwyll0lga6mkpjy71lq9zl"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.56.0"; sha256="0icqp84ppmj67vx0w69b7lh437fhydp6y8fi50qj6j8m6la4xr5k"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.20.0"; sha256="02nxyqr90izpzmvwi3pighnpf82m5b8rma1l2y24cnrymhrijmji"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.8.0"; sha256="0albrc12i00xwwk7ck1f07vxn0i53pzdhvwgx2x64clz4z2pqhxv"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.10.0"; sha256="0vzikln11ychk9sx7wi8mpb2vqdh98by308jj4773qnk5flyg7b1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.10.0"; sha256="1hzwjmnbkdb4v8nvsk06vmyh5hm1snjn1a2q21jingppjs0dzvik"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.24.0"; sha256="1fgqrkgqdn03c32xlhry7ma638l42mnqqvci27j6pa1c5d1l8gva"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.8.0"; sha256="1syfy713ybsl8vlvfag6i85icv34k1y0f6g6v168snc2z1xq4yrd"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.8.0"; sha256="03zaphvsd61m707czcb02za2brsas51l6l7nidpq9iisiy58fwzk"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.26.0"; sha256="00ia9a9kqmcn329pvipaz15xfci6rw4377hpf7gnxhjkxx4b1rna"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; + regionReport = derive2 { name="regionReport"; version="1.32.0"; sha256="0ilqm51dnhv5bhda7ljdn1x4hwr4infpngsvwn7wvssvsgp1pcz0"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.30.0"; sha256="01anwhz0axdl0g2zsaqz1qdxswxrryarbw6pmn5kmlpz4ipiq049"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regioneReloaded = derive2 { name="regioneReloaded"; version="1.0.0"; sha256="1m04wsciqdqjsfqkyb9rpq44jlcwiq0chr441jprg5h905xwcyda"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; + regsplice = derive2 { name="regsplice"; version="1.24.0"; sha256="06pp0m5y7y7f6bbwrgln76kskffy1mhcz1546657bsaqr67iaxmz"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.10.0"; sha256="198pypw448vp3wa17xw5ygvpidw4fry3qyf5q0z5rv5aq7dwd0ay"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.20.0"; sha256="10v569icyhnqqmplx21na6jyv5ipf5fbgygpd05fbjy447p8fhay"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rexposome = derive2 { name="rexposome"; version="1.20.0"; sha256="19kmfwpqyjl40nny5y8wy9yjbsv798bmd6q08ayk95n8gn7vhpx5"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.36.0"; sha256="13nmym6qvfxp85n9qh597vz4w0c4cvpqi9jj68dqvc2z0dhlcij7"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.10.2"; sha256="0i7w6062dl9plf839ildynldgbc1gjis1hw3y2flvkj9q5b32iar"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; + rgoslin = derive2 { name="rgoslin"; version="1.2.0"; sha256="0zcxd91qsz0p8z10cm1d2y81cj5ga7002p5sxzrzay33zcaa0f59"; depends=[dplyr Rcpp]; }; + rgsepd = derive2 { name="rgsepd"; version="1.30.0"; sha256="1bk6i336x2ng1kvgywcs18v6sn47cndahfbpcagl17x77pcna7by"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.42.0"; sha256="1vxs227d1295fz8irr6fsv603cw96a801j8njhblvs0cry38d087"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.20.0"; sha256="0wf0mv1kc3gd7vpazdip9253c1727ns9xysqfipg9lf1ydjny1fq"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.10.0"; sha256="17x2a3122mm3z9qnalw25am2x08cfpm17nwhigabid3ha3d2mgz1"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.32.0"; sha256="0la8kmxxh5jnqsrmmvyhi313bjdbqkiq16hcxar6mgyjhxlsm610"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.10.0"; sha256="16ikb3815cmwagjjjcv8rmshybpjl0vfc20mpl5xr92dzbnn7jj2"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.10.0"; sha256="04r0nhjfm659i5n2351f67dghjm9jrfvcnzbf7ylqgnhym4ibzrn"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rifi = derive2 { name="rifi"; version="1.2.0"; sha256="0lfs8v0nk19ywj2qz3bws8cpw9z44x2rjcg48ffaj0dan3xazs44"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; + rmelting = derive2 { name="rmelting"; version="1.14.0"; sha256="0j3k68ms5iarqr7c0haijgxkqai5282awxbjg7cwsman5658l30y"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.4.0"; sha256="0lcygxazp137v9m3l7vkp4vpc9v0ahggvy4k53nx8sp84nljgpbh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.8.0"; sha256="1sk69a2cnnjfm2a9fdyj07zkgnjnzlpx2rdbz2lihck3pf3b63l3"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.28.0"; sha256="1znbydb4pdmchrwr94r87v3k6zmdh6f2d5vrs3wvs4ak343k86x4"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.34.0"; sha256="1bf3ii3zaxkzw5y1wc5c474bq4cgavb67df54czmd3zi1lbhzphd"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.26.0"; sha256="0y7r7anz68jl8f6q2v8f4gh32v946xkkk3kzgd38y8lklwdmrf0w"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.30.0"; sha256="0vjwci0z83b56q1wi1k00926f0vh3220a44m0zzfxg2cm5j3fwxb"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; + rprimer = derive2 { name="rprimer"; version="1.2.0"; sha256="0067jsxs627fmxm8zd5zpycgcyir7mkcph91nn2kawxkhjgxx9wk"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; + rpx = derive2 { name="rpx"; version="2.6.0"; sha256="1530qv4z17lilly3qnpibcw7la10giwbvzwfwz6bg4p4q3l2zl6q"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.24.0"; sha256="063prv68avs1nwjwvp3685v1n8xvcpg7zsiy613mqg2k3fp3hjcj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.44.0"; sha256="0cmwx499a3s6a336afzx0h2mkhbxsrh4gpd486y5wxsbq2bva7zh"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.10.0"; sha256="0zh621sgy56phjm6h5733845js56s33zrww8z62l31v2yg0ff3zq"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.56.0"; sha256="1syg49qz6vwzyw2zrxwrfb7kzgk0lim1q674f7mfvjah1fnv8bgc"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.8.0"; sha256="0y7np05hcq7rhr0c56yiv4y1xqk7kjrlbwad0rqgpnlfscxclcav"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.58.0"; sha256="1qxr0ffmmkbfkbijz7pbks3kvms9k4a5rmma4j9p7ar477fxvlmk"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.20.0"; sha256="0g7hqgsq7h0338fmlb4ipv1kwiijcrfajhgwchn5akhspvsch269"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.14.0"; sha256="079lmgi6az5ri05lvca58msh678r7k1xwk3xhq8iffqh87wy6cmj"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSNAPPY = derive2 { name="sSNAPPY"; version="1.2.2"; sha256="1bg14wwcix64jkl5gbdy3jy2k50q7799swsadj4c5a6hk7bjk6jc"; depends=[BiocParallel dplyr edgeR ggforce ggnewscale ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db pheatmap purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; }; + sSeq = derive2 { name="sSeq"; version="1.36.0"; sha256="1w0iq7pih9z8662wj2lj1xbg66n752mx4g2q33ck5vwdxg10ry4c"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.38.0"; sha256="1gza1liz0y2i6f5nnnwbwl99fjp3cr1aknxiy3rmbjydfq8yxbrw"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.68.0"; sha256="0hh9gkv07qrlnarrj7h579dhisyq01c5jjl3rvq5w086wfy9154m"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.22.0"; sha256="0yvqr3xvji7zj6cw6kdr64k4sr71kpw3vwdv1dgi10ws3ygls65m"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.8.0"; sha256="0b72lqn394l73ck857dfs7iyxidzcjcy9hfamfy72g4p7804xpan"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.34.0"; sha256="1i8zxqw48az743q1gziwp1ah7dkvy0gp26sfa2j20i7lard663mw"; depends=[Biostrings shiny]; }; + sarks = derive2 { name="sarks"; version="1.10.0"; sha256="1f3yypn7dzjq58jnkv3jc0330mddpapzn1wlvq2crjbh161mxaym"; depends=[binom Biostrings cluster IRanges rJava]; }; + satuRn = derive2 { name="satuRn"; version="1.6.0"; sha256="1gldcdnpbxc2bgi5sr3g0cgkfx8gx2jmyadnxzm07zcmi724nsyx"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + savR = derive2 { name="savR"; version="1.36.0"; sha256="1b7kjgj2r6lgkdnrq91wcwvwb5an0gfdsbyp7j0pvn2byfm4lply"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scAlign = derive2 { name="scAlign"; version="1.11.0"; sha256="01gy9p07nyx42i0phgc89yhjavpykzgh1mwr11358ddbwz41hxnr"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.4.0"; sha256="0rc035kzbzrxvlcpphzg0yg7q82jvlxpi9xjq8q59hvbpyg1sz93"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.12.0"; sha256="0884s9laa63yf2p9wf66a67ipkc2x075c432x8p96vr326p4h8nf"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scBubbletree = derive2 { name="scBubbletree"; version="1.0.0"; sha256="0ivyp3zf7clr4zbdv2srjv42dx2zvlaq4yprccxb3yimrnmihks6"; depends=[ape future future_apply ggplot2 ggtree patchwork reshape2 scales Seurat]; }; + scCB2 = derive2 { name="scCB2"; version="1.8.0"; sha256="1r1iyw7wyvapnzxclrm036jfjnvlgpjpcwg635g0mwa4wyahsxnl"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassify = derive2 { name="scClassify"; version="1.10.0"; sha256="0i7r9yiw13lzwvy2vxwkfkj3x7a54gv6r8syxib7qj8yr53nmyiy"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.22.0"; sha256="0kmnmlzww2xfd04lp9nsh0wkigab9ipgqlsn2jrd77fizpd0kvwg"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDDboost = derive2 { name="scDDboost"; version="1.0.0"; sha256="066cp50n7cxr7wbcgz0207gh5a6h3lwbpfkn5w17w06k24f3zjkb"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.8.0"; sha256="0spw9m2grza3n2ghsw6z534xsd786rmww66l2xz7i37wjfdpv26a"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.12.0"; sha256="0gslh28rycx0p6a6fmzbsqy1hg2sn3pp5blxgw01qk9f0ank7szi"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.18.0"; sha256="04q0132vdcpxkwma91j29pac82fcjgvhhx42ppmxkmdjc3q3adzq"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scGPS = derive2 { name="scGPS"; version="1.12.0"; sha256="1ymcrlwxjnq6l8k2dd90iv95ha1x6l29v33106wigiziaw5y1vxs"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.10.0"; sha256="0d065rg1942ynvzch3d34hjywgscp8wz1c4i71zmxm5rznkpzsxw"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; }; + scMET = derive2 { name="scMET"; version="1.0.0"; sha256="0j6zfb1qlqbvfgfr4nqn43lxwgslaxj3dqd2wbnnmmq7zv2hxmdl"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; + scMerge = derive2 { name="scMerge"; version="1.14.0"; sha256="0rwhii3ypvv0frbfmlkhyfzwgy2wcrd3kn09w9ikwi8pn8pivcjy"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scPCA = derive2 { name="scPCA"; version="1.12.0"; sha256="1r84lnhmmhvb4qfmi575gjb2nrd4izaz9f4dzb1k8bmy83fkyfmv"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.20.2"; sha256="1qy0chb4w30lpywmyd1a0xfa8r58n95pd9hnr2cx5y38vhz8x9b8"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scReClassify = derive2 { name="scReClassify"; version="1.4.0"; sha256="0jq5ygm9s2sxh7z7hdrjgzm7kvyba6lrxnva6nv8qvlhkcczfnl0"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.13.0"; sha256="1qwdgs4jf3xy4x9jdd0m4c9iawq3kdghdswicyf85wrw08hlggc2"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="1.8.0"; sha256="06807wfmj5gdjh55fx2fphalbms3a83mpyrhyigpb2whbr9yzmql"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; + scShapes = derive2 { name="scShapes"; version="1.4.0"; sha256="1n0y86kd5cf4wz035q1pflifd5c455l2x57vfsfixmn5inixg6g1"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.12.0"; sha256="0fx0n7ll5p3fxhd0v5366knpnisrbsadimpd9z0l3zw9818kr12p"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.10.0"; sha256="1x0yhqa7h1gfz1z1hm051b2ml1q8nlc9q0rm1mp38nc23hcjaj7n"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.8.0"; sha256="0i15w3vl1yydag30kk7q5w95gjksb9ashann73xlp7v3j8ap1apq"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.4.0"; sha256="19pccz1j8pdx9a155hcs7f28p34zk3m3jaiywsbmxaxxd93bg084"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.4.0"; sha256="009i4dkagv0mpmx8k8rdr1sl9n79kayfjj953h11b1x8i9gkshkj"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.4.0"; sha256="1cd77fij54iadbwlyl3l1w6fma85y2n9azmg5mbqr0sa977swgqr"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; + scater = derive2 { name="scater"; version="1.26.1"; sha256="1mjnf2y41lvni77g9hyw8qlvlsi5nxv5ha0fnch1kmw9814nycq3"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrastr ggrepel gridExtra Matrix pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.4.0"; sha256="0fig318c9njgl3ficp7fnriip3k9ig72g0r2jvp9q7aahjap586v"; depends=[ggplot2 plyr spatstat_geom]; }; + sccomp = derive2 { name="sccomp"; version="1.1.0"; sha256="1bx7zknpd377ailidgn0p6xl9bx0j7lpxkm4igjpy8lr6mya6fq3"; depends=[BH boot dplyr forcats ggplot2 ggrepel lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; + scde = derive2 { name="scde"; version="2.26.0"; sha256="0qwfhqph5nl45y68bb5083l5q9zjydhs3wv2i70mcfrzcayqqrhl"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.14.0"; sha256="0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.12.0"; sha256="08xfbf8yiwzhzi0p1cix5hdnshlib5mg42qpk7ir5667i5lp5l1h"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scifer = derive2 { name="scifer"; version="1.0.0"; sha256="12zd13awjvwpgyinrixr7ys9989m2zs0w009r0nk0mgy0fh8vwhp"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; + scmap = derive2 { name="scmap"; version="1.20.0"; sha256="14vyjvfs2n4h0xsy25xg4zdmc8dqbg5vyl3qns6f0rh4bsshqdlm"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.18.0"; sha256="1gqgq6ganjm8madimxbqyw3z2fxq8d3pjhrfjvmkwgd2fzk3wb4a"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.22.0"; sha256="0pg09r28xqjlvb6nbswglnmwi05q63fag6rp3sw41g6z8gm5wap7"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.20.0"; sha256="1y0vinj3si683z1d9hfaxfwgn6jshi7h689ixqygqciq63gac5wj"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.8.0"; sha256="0n238jfn97y3njgfjqjf0baqr1l5pv2jm5zamyxyrz86p2811flf"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.26.0"; sha256="11iwpw44600pfx01vqil97k728m1wf4dljr27k2ak4s7z75kxfih"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.16.0"; sha256="0hg0f8k3mxhz4mk5r6qdhkr5h8rd1zv0x54bm1fq9pfc9vp90b8b"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.10.0"; sha256="0vx6fi8hnxms6d3hm3qxkrdx1qpyd7vhwdk7ds98ads070miqr21"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.8.2"; sha256="0anzmrhm6480p7xqsvpbihrrsv2bvz8znnlf46drwf1bd8n2hc3l"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.6.0"; sha256="124dmcksw1yl7p0rwsp1ddlfv3ing56ggkaln421n9jnmj13fv0l"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.32.0"; sha256="059q1wr1sfpi7vh7lrkpfzjd8rz19ya837y7hack0i9icygwjmk3"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + segmenter = derive2 { name="segmenter"; version="1.4.0"; sha256="05ichsmjn3pklrknc95yz9ghhvwjg0y2jw6wcx2pf4d6iiwg7d5c"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.10.0"; sha256="1pnqywp3wabd586xhlvxkrjvc1fyl4b0b6945rpz3qbaw1475pa6"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.22.0"; sha256="1wn2a86rdvh8p37iifhmsq149j135dyp1h0xr86xfj88ffzj0y9n"; depends=[VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.30.0"; sha256="0g43693cqqi51fbfr28hbhcmnjam6vvf1llzn1wizbahcchgjvwx"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqArchR = derive2 { name="seqArchR"; version="1.2.0"; sha256="03j4vff2lp1zzikhfa5sflnc0bd63r72aqim3jdsyrk5ic6355d3"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; + seqCAT = derive2 { name="seqCAT"; version="1.20.0"; sha256="0hv0sabc82ak49di42xf7an9csgp9q0d9wkx7d1sjlfm9ayza88z"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.44.0"; sha256="08hhjp5prgnr3c2j2r69f5sl2wf5jd1mrdy43b1kmnlpnm3yz16i"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.64.0"; sha256="1xlxi1iaqj7iabzbx15j6pk4551dyj6pa6a6qf5ffr3v7k2pmznp"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.30.0"; sha256="17nvxy8kdc1k0kyf0qny6jp3gzr024q37mmh5x18jjr794hnf9s5"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.32.0"; sha256="0ya3y3zam68zyw7ky2k8nswk4zd8c0fhihyg6qdw43aicisykms2"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.46.0"; sha256="0mc6lv7vkch138n46gk1q1hfhv37mfxjij39q36wa0jy7s8cagfa"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; + seqcombo = derive2 { name="seqcombo"; version="1.20.0"; sha256="1q0yfcw30rgnz7l3miy1024vhjlqrhf2w0b3yvs4df6sb2w37q5m"; depends=[ggplot2 igraph yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.18.0"; sha256="07hsapdr1562jkf7xacpx97lq1rc3935smkxy22w4nzk7a6715sw"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.16.1"; sha256="01b2a06xz9cggr57m920dh1pylac30l5w8mxq5vcb4jbl1flh6py"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.18.0"; sha256="1xw0whm905zm644iadv7yiqid82pxw46mv0n6m24591hc7p0xjyf"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.28.0"; sha256="1sfwa4i3ak87wfj04y5gi4a5cw9by27xqv41gz29sgclh61gmpc0"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.34.0"; sha256="1xbadc4xszcqh211r8z0wp417f17aczz834icli17mcsl996ln3a"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.6.0"; sha256="00ma5la96w5djjcmz42jc6bzp8b9jk398y0s4sbqg6pkwcw235hd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.16.0"; sha256="0ivfi4cr2lw59cj0c3biqbbc1m3vnv480gmijfk9hx86g60wx5fp"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigPathway = derive2 { name="sigPathway"; version="1.66.0"; sha256="0vb6v61ak8z3hx7d65lr1hrxk89n36j0zi3x0pp828khdyh3zvag"; depends=[]; }; + siggenes = derive2 { name="siggenes"; version="1.72.0"; sha256="0gis34s56y4xa61a9gywjwgd6525ywasa6r4xxhj3rshh1dz5jkv"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.24.0"; sha256="1qwm470ysc4jlp6pazpmyb8wpcisv2397328f0x37g5a5vilzx7c"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.12.0"; sha256="1wzhli6da0x7126av9jx1qar04wlwx16krzspglfg0c1xagvm7sk"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; + signeR = derive2 { name="signeR"; version="2.0.0"; sha256="0pygcq7xc15xmab71dxqsw14rg50mnszlnmx39wz6gp75m3n41c5"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; + signifinder = derive2 { name="signifinder"; version="1.0.0"; sha256="0gbhi9sklknnc4hp2w5wp2bj2rq0hmfqzcx3nqqf78fh00gz5bk5"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; + sigsquared = derive2 { name="sigsquared"; version="1.30.0"; sha256="0xai7gk3kq669ngfdf7cpizaxv42sj50dzvc6xcqkzahn7l3y9pw"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.30.0"; sha256="0ncx8r62lvj0711f37szd9998cfpq5nsw6nq00xvkd781p3jf0gn"; depends=[R6]; }; + simpleSeg = derive2 { name="simpleSeg"; version="1.0.0"; sha256="1i4pzi66hlfmyd23mk3rck4zainaj3nsz2ksc3cvi2vrk0whm4ds"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.8.0"; sha256="130x5hy6jzglc6clwanh2kmhw567i802w620ffs3977kjfpjsjgy"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.30.0"; sha256="0dsl7p18nw7db7g7fx3l4x6mpj4krkxxacl8gddq91xiggjiib1l"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + single = derive2 { name="single"; version="1.2.0"; sha256="0dszp2w7qxx4cnlm1bsy89dfmwqmg2fr337wqdbv42cgniyscxwa"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.8.0"; sha256="03jiqf23f04cvzrrwq29kwd1x84dnv5nf41hbzmi3jd6rjzdnd5s"; depends=[AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ensembldb ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.18.0"; sha256="10hffcscysv8n1iijn2pqzkn9rhnh0xp07hl9b3688jzi1ydjj3k"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.6.0"; sha256="1vqs5vdj12dll199cmsx6l1brfk36cgmv89lqxgf6bl0570gl6ls"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + sitePath = derive2 { name="sitePath"; version="1.14.0"; sha256="06l55v7s8sh2gj687pdp93ffkaw57ad68sbkf616hdr199dfj1la"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.68.0"; sha256="10wsvs54qdvwhpy865dlpjwzq7l1cnsg8hq1vs1jp36vspwwxzrg"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.30.0"; sha256="1dwckg1i55dgz6r19gkvpa1k7j2xdhzr0g408q951npi1hzq1hmb"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.20.0"; sha256="02j7i5wkip4ybkc61alxq4fnlmmam4jilxbxzxnq9w5cwkaf776h"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.6.0"; sha256="00h9iid2z9r55l4hlaa1q0nkbcfq0f7k2afkw4ymjwhm1b8yqj33"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + snapCGH = derive2 { name="snapCGH"; version="1.68.0"; sha256="1zxvl8mkby7yb5kppddag6k9w78d1fm6adx52h4cgrfckn28w64q"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.10.0"; sha256="0y30ndqgld4c5ql8xp68xv3bi92njjqh9jcj2pxvkf7h9r3j8lad"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.8.0"; sha256="0n39vlfkljckh9hpjwfyxbxd2747ss7y9nxb0hb0188p75q2dfkl"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.46.0"; sha256="19gxs81i4ghwdjfi86xxsgxniha1wkmm2ivddcv5nhv90d3lai2j"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.48.0"; sha256="14rkrav4iydc85194skdy33sk365pjmmvxxvzaxxh0k9ds009qwx"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.30.0"; sha256="08prw50z7rdcys8gbc0sn55i8zkydijjpjcqpz5hw7bcdcqkbd37"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; }; + spaSim = derive2 { name="spaSim"; version="1.0.2"; sha256="0qp2qr2my4s8yxkzyhsajzvgy3w5zsx70z2kp44sfpgh52krijmx"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; + sparrow = derive2 { name="sparrow"; version="1.4.0"; sha256="04cshh2ilp5h5ls7zj018imgp1s8lw42i0x0vb171nrjnav7a8pl"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.22.0"; sha256="1c8dlfc1jmr3c4s1fnr31444mh92sn21bw8rjcr6andx4cmlryz2"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.10.0"; sha256="1rq23ra4nnz9dx0gsg9bh8zcbz6s0pyvjwq30xl6g4hbqz927xb0"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.16.0"; sha256="1d4gpf919rl50cbnk849bgp7wz3iiczzg94v856z2r7d52f4qx86"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.4.0"; sha256="0j6i3ky6i9hzib2zqszzjqm002k6ssy3c4nwk462l0bjy720whrk"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.4.0"; sha256="0swqmynvhr1vdmrr465aja6zln19psai5ymv07kpakb5dxhfpsgp"; depends=[BiocFileCache BiocParallel data_table dplyr dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport htmlwidgets igraph limma Matrix plotly rappdirs reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment tibble UpSetR visNetwork WGCNA xml2 yaml]; }; + spatzie = derive2 { name="spatzie"; version="1.4.0"; sha256="040s8nmg5hr6rjb7cn2jxjihr8m80v1bdbcynikqxn6vw1cqr3h2"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.32.1"; sha256="088fgp8lz6bnrx0ddn61x25vrp672q7cr0ky4x2vh31q4rd0j4zw"; depends=[DBI protViz RSQLite seqinr]; }; + spicyR = derive2 { name="spicyR"; version="1.10.5"; sha256="16rn43z6dih1ik7443b1pk1ccwfh0flncab6w6b1xvnn8p6nc8na"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggforce ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.58.0"; sha256="1wv6xybjf7m9rlylr2dbh5d9kx5vxc0l72y0581fj7l9352qgznh"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.4.0"; sha256="0pdsxidi0pwmwb94iv4l7346vsy9ccwqlr8l62c7ykgnvgn0v1ji"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spkTools = derive2 { name="spkTools"; version="1.54.0"; sha256="14nx30vhimx251w2fixbiis72wi2v8f9rcdbx18rkf6wg0iz2wbj"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.22.0"; sha256="179vyapbq9h25h2sv2ai3k94m8k8qn4winvic43dgw6wz15jcvab"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.26.0"; sha256="125g0sxlkj8f699f0arnq43inx9w4a05bb5jfn6nw9xiqv5pqgah"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.64.0"; sha256="0malaw94s55qh7x7x98s472vnr2rgylgfvkrf0113h2l1v92nhmy"; depends=[RColorBrewer]; }; + spqn = derive2 { name="spqn"; version="1.10.0"; sha256="024zjcf2wwj2i85zkwdcqxxr88066dsbw2i44mmihk121yhf6qg4"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.18.0"; sha256="1fkkbhdwrirq5z1435l3vi1xy324s5ywlg17npdk30k06xa9bpfr"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.12.0"; sha256="08wcv1jni9vhqnzvn41nsq9254px3qdf2wv60zkyrw8wpwkpyfy8"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.70.0"; sha256="07rzrac3v1lz4qas0zl6b9mjh5kvpd2wjgczc92dsl9x7ac4nn9i"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.28.0"; sha256="0c1g5220bk5rrhngbjdix6bj03vd9vx62z3hmjkx3dq88p1wfkq6"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.72.0"; sha256="1cgh2yniw4mlbmfcmawpv9kf8fkjw6w8b58vkndwcpf6pz7bznbk"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.14.0"; sha256="0w4b7xg0qxsn7sn9skqa1qvjrmicr8baxlasaza1gjxlqngvj95c"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.32.0"; sha256="1zplxlbd2f5h86dzgfw55q09jpd27fkaslswj6lrvavw9a89pmc8"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + stJoincount = derive2 { name="stJoincount"; version="1.0.0"; sha256="0lphq2dff2dpbjixwf83dazb2fkncfn8jbaqsnhbskd8ansmydid"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; + staRank = derive2 { name="staRank"; version="1.40.0"; sha256="1f92yc538dvyqyxswrqwf1c0r8kaj45wpcpikrs9vr1g0s072lv5"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.20.0"; sha256="1layvv9akzijw2br9jzw6cwxn2rimha4m48fm8wn465n1nqcns0m"; depends=[SummarizedExperiment]; }; + standR = derive2 { name="standR"; version="1.2.0"; sha256="177kk3kcydwhb2ha9jxw0zlfzv93ga20pv7mkd1m5x0nwf400q8d"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; + statTarget = derive2 { name="statTarget"; version="1.28.0"; sha256="1cd5rbwrf9ybh08zfb7wagr5p9172xrblf5k8kh9hd7v0qd8ax1j"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.70.0"; sha256="0b26habd4gs0iy8vrq6mfink8yy93sn5hgq5jlx6c65rba8cs1nq"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.16.0"; sha256="17ibvcff0qdjrwvbhjzphxc8xyk8hv0rn5kyfjnwzkqsqvippx9g"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.10.0"; sha256="0piz8kgxv1l78k5abvmzb42p0rc29j1r3iyj4izh2rpn0k8lpwpf"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.10.0"; sha256="0gncd3f86067j9c8cwfnqrkpwizjm5irvhlnc0ibb3vzp3ymbr83"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.28.0"; sha256="0q5snp5k3fdzp3bk125ix9ksnn5w81hp9bq7hx7vr5pkcr27y2jr"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.6.0"; sha256="1dy4l467xj77bragcshwyildnlybx3g4gf1sds005yf6766kmjr9"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.36.0"; sha256="060z35h4d48xq3pv3i00pa8m5vjg15qama8s2pd5vwgnyi0pv2l1"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.4.0"; sha256="0lbdcx88j3icrfg5py3iarmjrb3a6ybzkdvq25q51qzzlwixzll7"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.48.0"; sha256="0a6sqzgvxfgjr6yrpv1vaza6yni6n1gminr2g0912rhkaz1c7z6z"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.14.0"; sha256="0z3vgiryafqsqwxk5gzpkp7svkhxyqvl2sbh5vvfpdb5jil93dgg"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.46.0"; sha256="0c1b7w4rvyy8i0jygj8g9xgf46rmgx8bpdlp2x4fdjr9xsrsl23g"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.4.0"; sha256="0vhl1d8b4ys1nd44pf5z6kr4gl5cww9ml8pnf7fphzz6d0r8hg89"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.4.0"; sha256="04z604mkpzmbflf34338011dmbwzhws294jzc06akxg98220airv"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.24.0"; sha256="0svvmssp4jlhcs8agihpc4hlar83d5czrlp7l5xlzf4cagzx2nv9"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.34.0"; sha256="0mi9wwlv8rlcf4lsmingnb7d195ji19s264kfdsp5gpc7vg9arli"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.24.0"; sha256="0j1a1a1zg0f9xirbva42w48k06b9kbk340jygcj3gp18ii207wql"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.4.0"; sha256="127yx1a56r0fh8n9ir2zlhxs2fj47pfdxn8dssdmns0d77rhnnvc"; depends=[EBImage]; }; + synapter = derive2 { name="synapter"; version="2.22.0"; sha256="1zl8nqyaqrp424k0a06s4h7ffaxixhf1i39zx3kl3bhvayqmqviw"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.6.0"; sha256="1b07cqv3jqsz5xpins63maalwjljj21wps79d029r9xsppv1271y"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="1.28.0"; sha256="12hmzwfd31nhnxcjxcpyw5q5rsgky99q446qk52dy7vqy5achld3"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + syntenet = derive2 { name="syntenet"; version="1.0.3"; sha256="0pl0gxxjwxqv8gq6a0fkq32c4vq4cpp3aa77cmc1r4bqz0laykr0"; depends=[Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.4.0"; sha256="0lwc4d4k6qmnwsh8fpp5rmiaxhzwl2f0dhzs23ska5xy04466r49"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.8.1"; sha256="193c7si0jkkfz2p3sd8am4mga721mkxxf2wyv6b7yqarhvi5cdc2"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.6.0"; sha256="0qj8c652ms4ja4bjp57gx75xr4m3haj9bh3q337cqqr0wk02gn80"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.6.0"; sha256="1clpyiz04scsknvq5y1kk8ipx1a9ljrb1127wrsjvrgj6q4fjilj"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.16.0"; sha256="12vw3wj8gn827vc1hwfqsm4cp4qs2k3vy17y4i4k33z9iwkvlsxh"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.16.0"; sha256="1zmqdh9va0sxzf9jfngrhh5kdbkshz0n5x7fqf23anyhwwzr8z1p"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.18.0"; sha256="1hnd953pbhzx6b3hqn8mx5d6bv43pc6dw3n7a9z393rkydn21wdg"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.36.0"; sha256="1w2fii837md64pg4d79shxmk658vi0dkqggl6r6b11f6m2ja946v"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; + tanggle = derive2 { name="tanggle"; version="1.4.0"; sha256="11mhavfy1fscndz5yiihxb9davmwvxslwj6ph7251787h1sr337g"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.12.0"; sha256="135hphjpp8326gbsl2j115082pnazpr6n5rj9ppync6bbl1iisq1"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.20.0"; sha256="0di434q3xch7hb93cnaa7zac4s8jx0k7wbvf6rl0j0rk35zdp3lx"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.42.0"; sha256="01z262509vka2sfhzccwlmgi5frf56x07gbsan762hgvrcscg8jb"; depends=[BiocParallel igraph]; }; + terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.2.0"; sha256="1yfvqdsgd3apan43cbjin95mwnbym1m0f1c8x212k277cc3rm22r"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.8.0"; sha256="0kkxd64rlksw7l0hw53ckc9mhsvsb0yj8w078bh4rd16iqk3jnnc"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.8.0"; sha256="0y7k0svcjx0lvxn3jw8g7vkrvwhvj9b7mhb0igavad1rc5pc54f3"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; + tidybulk = derive2 { name="tidybulk"; version="1.10.0"; sha256="1n31wqad7wdfyfy1mcjsq68rlyyyd15srcrvz6ylp2pi8nbwxfly"; depends=[crayon dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tigre = derive2 { name="tigre"; version="1.52.0"; sha256="1cj4yqdad1xs8k682qx92b03nbyx51qdqsf7y90bll3z51xhwvdq"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.76.0"; sha256="19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.10.0"; sha256="1szhdd29gfa7ah7yf683d69s2w0w6r8nh3kc7fii3vnyqspspb19"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.70.0"; sha256="0lq5haikg76vbrf3jmyxx6s7kglwaabdbwza2sd6zg84lbpyw3nv"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.22.0"; sha256="0i0v10gaj47dw53am4z1rdhzbdfh8nybgdb204h928jfnc1ag20f"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.76.0"; sha256="09zhzm42h814srqzkzdswp4y450j24166r87szlimzcdjm38xnkj"; depends=[DynDoc widgetTools]; }; + tomoda = derive2 { name="tomoda"; version="1.8.0"; sha256="1sfn1l0bys7bmfglhn73jw7qzniabgv3ffbns4ci17d29zzf0akk"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + tomoseqr = derive2 { name="tomoseqr"; version="1.2.0"; sha256="1x583lzmf2dslvm2a103i7k5gkd6spavnrrxxp6v35dmj1g531fg"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; + topGO = derive2 { name="topGO"; version="2.50.0"; sha256="1ripdn7mcabh96bm4p807dbwj7jv05a54kss4snhz84svqq383m4"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.14.0"; sha256="00bpbkwafvcak847grg2ypmnagwr2imdg4vmsm3f5s3qd97ra69f"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.20.0"; sha256="1m5213k4drmicswjsphzz7m9d93275vlwy1fzp2iiaqjr7w12b6a"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.34.0"; sha256="1gd95f947lw4yp8l9azlfg5hylg6bxfc10dxw5cgpsacny9lnbkr"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.32.0"; sha256="1cp9n1sa028xh6265gn83xjy6bqc05gnghdr6lnwmb75pv7sliyg"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.12.0"; sha256="0wkbjhwqk094nd5h6sl2nw5jp5vmkh9why635l8qkqmxa2jm3gh0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.26.0"; sha256="03v8xn777vyma82ma5dzk07i1g7406cvsybdz4bf6hj8bgx5ynw7"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.20.0"; sha256="0m9kqshmvfyj30ssxp9qx15780zpmxsq7vgidmz66pqv36cn06vh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.4.0"; sha256="1ihk1bml8kjzhfx52zj8xxbrqb12p2jphymxi7rh0df038khj4sr"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.16.0"; sha256="0kgh4npxfkbmd525pmpf08247wrdary863qhvmkwc3z7i91973sj"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.8.0"; sha256="0r5cc3r2x1gjr5f6wkwk8jw812f6asfk6r5qr9wl5iad4h1i2d20"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; + traseR = derive2 { name="traseR"; version="1.28.0"; sha256="0pya0d9mng8lizc0x08pai6bjvaxj740h903p4y9b1fshl27r6mk"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.4.0"; sha256="17nazzn7h5hmmrb6dfxybnfj4yhc0qikn32q7ari7v5bg6fz6bky"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.22.0"; sha256="1xl8497ya79hlp3v3fihnz9grwni29v6860i273lrpcljv8868l9"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + treekoR = derive2 { name="treekoR"; version="1.6.0"; sha256="1ii65rd30zcwsi782wjklwhhg5frr0ajb1cfmfcpprrh9841fmin"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + trena = derive2 { name="trena"; version="1.20.0"; sha256="0c2m825p2fggr8y6zmqa2nlhvh28k6miga6812900fcc1r82fv2n"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; + tricycle = derive2 { name="tricycle"; version="1.6.0"; sha256="0b5agqhywg23zxf0f9s1vfbzs7s7ijf9c716s7hwjprxfdz5znvw"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.44.0"; sha256="0h9zv5ak3arp436ivxqz7xmfanqk6m8k7xs0y5c6586fjzrhz7y5"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.36.0"; sha256="1gccqcyrq5di7763q4mpl28fj64bpjm5s1vwjy5cwkhhkp90kr23"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.38.0"; sha256="1zd0r8xn8ri357x95cbd67vcsvjicq8fzqj0gp18v70vq22k331i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.4.0"; sha256="0kwmi1s9v0rwpf9qgdah8s5c93f17qcs8s5hhhd2z2rh9lm7sgx3"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + tscR = derive2 { name="tscR"; version="1.10.0"; sha256="1i372yw3rf1s1zr5dn7p2w9p0qgmghl1b1is8wq20g8zz3hf0aka"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; + ttgsea = derive2 { name="ttgsea"; version="1.6.3"; sha256="1c4ngsrczca10fnlrnr8n1h55j6g1xj3laklr8aahhgdq5isajr7"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.44.0"; sha256="09rdcax78vbcrl7q7i457n18jk298lxagxm0v89x3s6izvqr025p"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.74.0"; sha256="1lia4q637ngh47zlr5g18isp9acrb4d9g1fzck2akldqa0pnn66r"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.22.0"; sha256="01bfphc5hi8mk5j72f95pdqbi28bj4nfdvr0lzp9xs38qfnb80h7"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.4.0"; sha256="05skv6ks1gq2wbx9gm5c3gk5k77vy248brhcay43ni900xwn10zi"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; + tximeta = derive2 { name="tximeta"; version="1.16.0"; sha256="0v1s5ssinyrizpg2i88dn2ckzs4i16hjfg2pzxhal3ypsiw24qna"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.26.0"; sha256="1w1m6r85a5nvcfxbkq5dmczaar8vf3vbrgrmxqkjqhlpcq58z5ng"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.24.0"; sha256="1fhhl00qdj7ihvb3ia2nd215m1ylbaszpyq1w7bmgv89v5ghhsgf"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.7.0"; sha256="1fsn5wpknx1f6sj12x9q456iqi68kwgcqzkk3343hfg185rnn8sh"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.34.0"; sha256="0zkqr1s8gagwsh33kzp0n2n7ff5jhfn6a60gvab5spk7vr76j442"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.16.0"; sha256="1vfg703wxbgxw2cwqqz3kfyqj4za5n3skxxzi8c31azamg4hxs18"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; + updateObject = derive2 { name="updateObject"; version="1.2.0"; sha256="13rq1hv0rg8cj3z8d2b9mfih5sybicb4razv8vaic1i7c7sbypwf"; depends=[BiocGenerics digest S4Vectors]; }; + variancePartition = derive2 { name="variancePartition"; version="1.28.0"; sha256="1mn91r0yrhz08m3vs2h3i35rcbxyc7sdfknmk6vcw1z75znjsnpl"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack reshape2 RhpcBLASctl rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.66.0"; sha256="1gfvk1g9q73p9z91zasblya1w218yhzawp6dgyf0lnldx36kpvc9"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.8.0"; sha256="07nwx9cahia4a6g15xhccdlwxnhvwq46dy2hqcqqzydgpsapa6wv"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.4.0"; sha256="01f2d28h0gnh38g50yphmg3aqy1ya2ysj1xabs2a6y3wnqzrahzk"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.18.0"; sha256="086q79hf689hslsrxzzif9f7cwkm80djfl0vn75cd0xbhsqpsayf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.32.0"; sha256="11i2q9nakh534nx2l736id7k1yqhk7jpg32sbfl4vrnh398q86h6"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.6.0"; sha256="1wfdrqvsqxc3jllmqbrrcwy7737kifxzmgrlr220zfzhc5hf4888"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsclust = derive2 { name="vsclust"; version="1.0.0"; sha256="05lzdrjira4ck0b3jjfs3n7fhd8p65pvy4p96241j0lng1q9bwgm"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; + vsn = derive2 { name="vsn"; version="3.66.0"; sha256="1k77rg5jf646m1pn59qhlsbb9fzhlpnrj4dzxagknawcbpnnjl0z"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.38.0"; sha256="17b744wiknlgwq3c404ijnd3nqp1hran2v315gis0y20kb9xbjm3"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.20.0"; sha256="01cz2kv9ayb0819kqc65qhjs9ny3549a8af5c1lwrqxss8bg9s6b"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.12.0"; sha256="00yjkphzj7yfz57d6i64w75x4mc8i6sjvb0v0jjmkg2vpbmzbfnk"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.4.0"; sha256="0m8mra0jb6sgm13dagqn1pj81dha4dyj65xc6r2sh0yc3pyjb20h"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.32.0"; sha256="1z7y3wnrqr2xqrvs2xwmv419aqlizq0az17dpxmj1hg9knyls1bx"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.64.0"; sha256="1ykdr01sichl615m6m5dbaarsz4b3fg59fd9cg3gicp01nvba6mz"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.70.0"; sha256="1mgag0gjavpld4xxlpfafq6fhzjafxgqyf677xrm6ff26z6z1ja2"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.10.0"; sha256="1mh2847rxs35n1dmzpx0yjaszhqb67ff2qdzcn0k5ki2acm0f4l5"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.76.0"; sha256="1p93dzf7w9z1ria0f8n32aymam9abxyg50ngnh7s6a8n24mvvjy5"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.22.0"; sha256="1yp9siy4249wkwd0yy5lkwp79xir53f8mihiv4dkir8fscgampl3"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.8.0"; sha256="05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.6.0"; sha256="0kc3nkim8fhajhai5bwzwirsg74zbdib3dd7cfr75ddwd8myc913"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="3.20.0"; sha256="1gj0nd90c6ykwn1n7xndzrgfv5dzy0y2lh3bf8120nacccgxl2qx"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xcore = derive2 { name="xcore"; version="1.2.0"; sha256="195gcnpyqn2slvjnj0cvsc79csj505ky8g3pghhjijdjybpbqg4z"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.56.0"; sha256="0wxr3db2daj4xlr9df6iqwm00m71kln7rhqnq2ckdsricblanhs7"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.24.0"; sha256="0bh06mncjrkihz2j29hasbipfl50x7393wshdcnlxrs5rrq73r0n"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.24.0"; sha256="0sqbll7ja0qr8r28dqmydmkvg4ijfm7z8hbrsrz3xxdan70bmd2r"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.20.0"; sha256="1wsmv4fld4s7l0qh84ghizq8k388ybdz9hzzis2gn1nn57q1c7wi"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.8.0"; sha256="0b14v6lyhfapmfj8j729k5cmgxc4df6wsk2rds0q4y6z4hiwgmxy"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zenith = derive2 { name="zenith"; version="1.0.0"; sha256="19kwldj2wxpzyxdjh4ls86li2v477swl6zxkzr9rl7r183z4b5ha"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; + zinbwave = derive2 { name="zinbwave"; version="1.20.0"; sha256="1356ms5y6fg7ndn8hvs6zsyr0jg6ah7a56qxd2x4xgyjj3xcakbv"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.44.0"; sha256="0c75mf0iw6bgwrn3zxpz1dz03aw7p6a1mfhssk6i1mp24avic9lb"; depends=[]; }; ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; }; + BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; broken = true; }; + CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; broken = true; }; CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; }; + CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; + EnMCB = derive2 { name="EnMCB"; version="1.8.2"; sha256="1kna7s4rz5mlaj7vwc0mrzaziadvai7zq8ajiy4jya8xw78llyw4"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; broken = true; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; + GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; broken = true; }; + GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; broken = true; }; + GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; broken = true; }; GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; }; GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; - Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; broken = true; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; broken = true; }; + MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; }; MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; - MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; broken = true; }; PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; }; + PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; broken = true; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; }; + PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; broken = true; }; RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; }; - RNASeqR = derive2 { name="RNASeqR"; version="1.12.0"; sha256="1f2rrk4lb8mawgy6pzkpdmjp85pl23mb89b45ay54jp28j16dgr5"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; broken = true; }; + Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; broken = true; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; + Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; broken = true; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; broken = true; }; SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; }; ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; + Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; broken = true; }; XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; }; - coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; broken = true; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; broken = true; }; + ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; broken = true; }; + diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; broken = true; }; dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; + flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; broken = true; }; + gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; broken = true; }; + genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; broken = true; }; + gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; + gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; broken = true; }; + inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; broken = true; }; + iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; + networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; + phemd = derive2 { name="phemd"; version="1.12.0"; sha256="0nn0qgb0rz4j2xsjq0wydjhg5pmf2ra67rm9fdm4m1izmzwa0nhs"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; broken = true; }; + ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; broken = true; }; predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; broken = true; }; + pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; broken = true; }; scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; }; slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; }; tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; }; + tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index d9ae842f48a4e..24b97075ac273 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2022-10-30"; }; +let derive2 = derive { snapshot = "2022-12-13"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.2"; sha256="10adwxyqnbjw2a0pxrp4qbs68fn2bdxwcbaqmvx5xfgrj4skl68z"; depends=[doParallel dplyr foreach magrittr]; }; @@ -17,8 +17,8 @@ in with self; { ABPS = derive2 { name="ABPS"; version="0.3"; sha256="0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll"; depends=[kernlab]; }; ACA = derive2 { name="ACA"; version="1.1"; sha256="1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"; depends=[]; }; ACDC = derive2 { name="ACDC"; version="1.0.0"; sha256="11nlg6pcmfa8pl1f5fxxcig1z1j74yizllh5y9rcdbdfzcasvnzn"; depends=[colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork tibble tidyr]; }; - ACDm = derive2 { name="ACDm"; version="1.0.4.1"; sha256="129ykw0j8z30mr4c01qzx6qy6h4bl87zxvmps0vkh8cqb7akninq"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; - ACEP = derive2 { name="ACEP"; version="0.0.1"; sha256="1xpn3x89zdwkwvki4hij2r2fknn75qhjxhdcmlj8hk86fwhsqfm4"; depends=[]; }; + ACDm = derive2 { name="ACDm"; version="1.0.4.2"; sha256="00i33b76gqllyc6ywwwrgyjvxfspqb3jf52b9sjaazlfwgn5xyjf"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; + ACEP = derive2 { name="ACEP"; version="0.0.21"; sha256="1c3krdxfpdmpj8z3bwi6gqq621n1hvna593bhcmrzkyv2jkc0k7a"; depends=[httr]; }; ACEsearch = derive2 { name="ACEsearch"; version="1.0.0"; sha256="1ssq8avj20dk2mal0j5dvshf7qgk0as90sgl71cn91cq8lbiilpn"; depends=[httr testthat]; }; ACEsimFit = derive2 { name="ACEsimFit"; version="0.0.0.9"; sha256="0ifwgpnql14z1qzw8fmllgzl97bwd35f0558ymmcxz1mhgh6cb2v"; depends=[OpenMx]; }; ACEt = derive2 { name="ACEt"; version="1.8.2"; sha256="0583c9dg2yf01zf5p0bf24zipkm8yp7rwhn1dxyw2d0v881bbli6"; depends=[BH MASS Rcpp RcppArmadillo]; }; @@ -54,6 +54,7 @@ in with self; { AGSDest = derive2 { name="AGSDest"; version="2.3.4"; sha256="140bqzgaagdyzgxsn998jw2sxak448i47xyacn2psfnps440gfjr"; depends=[ldbounds]; }; AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; }; AHMbook = derive2 { name="AHMbook"; version="0.2.6"; sha256="055li8mj863icvcrp23wfsg7gf8zmi8zn0hck2yraygazv2xk97k"; depends=[coda fields mvtnorm plotrix raster sp spdep unmarked]; }; + AHPWR = derive2 { name="AHPWR"; version="0.1.0"; sha256="1g7d1vbjxb232fk6wjah73kjm6pj81acls8wqssphgnfiffgrrq6"; depends=[dplyr formattable ggplot2 igraph magrittr readxl tibble tidyr xlsx]; }; AHPhybrid = derive2 { name="AHPhybrid"; version="0.1.0"; sha256="1hf2ba52nim13jwkq857vnmnnb1yhgdz6kipqg3mmqrgz7kg52v1"; depends=[]; }; AHSurv = derive2 { name="AHSurv"; version="0.1.0"; sha256="051q6iamqhhkrq7bfhq40n9svd4wfqyxscgwfnsflqdmbgm6gghs"; depends=[flexsurv rootSolve]; }; AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-1"; sha256="1c2qqizssy7jvzkndlljazk28rjq5csgawzs43gv3s9qbahpslfh"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; @@ -67,12 +68,12 @@ in with self; { ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; }; ALTopt = derive2 { name="ALTopt"; version="0.1.2"; sha256="1nbbvniramajg6k83xqgx7r0abjrfja8zz0y3g3j8qmvbcqmjx13"; depends=[cubature lattice]; }; ALUES = derive2 { name="ALUES"; version="0.2.1"; sha256="12fayxz0cb8wibccgz62gzrbkwzw2y4xljixrh02i1lbfwgsky14"; depends=[Rcpp]; }; - ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.0"; sha256="0q02rz947bp6i7sbb5nzxq8ky74iprdnpbwnmnn7vg29vhca4b09"; depends=[Rcpp]; }; - AMAPVox = derive2 { name="AMAPVox"; version="0.12.0"; sha256="11achgmgh42q3m50ilxw7laa5v93nq254rl373z7zqk1hvpyy3xk"; depends=[curl data_table dplyr rappdirs rvest stringr]; }; + ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.1"; sha256="0asaip7mq1brahirm025d57gk1fgysbmhi6jypf2jihai7dl4jg2"; depends=[Rcpp]; }; + AMAPVox = derive2 { name="AMAPVox"; version="0.12.1"; sha256="0hn9c0kasyvmfavk8ppfasl3p171xi5p3qzydsk41szvkm9wx6qy"; depends=[curl data_table dplyr rappdirs rvest stringr]; }; AMCP = derive2 { name="AMCP"; version="1.0.1"; sha256="14fbb2p4dbgi7i31xxavrldw4wnd4cjjh56ys63rivkswi1hhzj2"; depends=[]; }; AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="1.0.0"; sha256="1vgncc61gmqhax2a7072jb36bzkycv80xqihkr5qs8jxnqqkndxd"; depends=[]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; - AMPLE = derive2 { name="AMPLE"; version="1.0.0"; sha256="1lcwwf41i0mkg2bv8z5mzrj6h3pa31h33mrmbxbndjgb3ivz2wf5"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; + AMPLE = derive2 { name="AMPLE"; version="1.0.1"; sha256="1bi39liky0lmv56rxcrf4m9vc3s4xi1z2wcigfkpvsap4gy67qph"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; AMR = derive2 { name="AMR"; version="1.8.2"; sha256="1d47akk1amf9x28a3ss0j2453hk9rdqkzdklxnv40b13hvjd8l0n"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.4"; sha256="1izljhz3rkzq05dkvg9q3fdyj7q871j8lsky67d5r8ffpzm1lk3z"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; @@ -82,8 +83,7 @@ in with self; { ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; ANTs = derive2 { name="ANTs"; version="0.0.16"; sha256="1bvbr9m5fbq3x5mfn4xhfm2x7a8zs616cf02gzv65r8k9q2348ll"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen rstudioapi]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; - APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; - APCI = derive2 { name="APCI"; version="1.0.5"; sha256="0wkpcjsgzk01x4qc395wwqr856fr096v8vhydcw84yrmp8w3clxx"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; + APCI = derive2 { name="APCI"; version="1.0.6"; sha256="0lfbx067vqh2yn15jmiicva8h38k0vgdr3s6m2jgswfbp11a8pjh"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; APCtools = derive2 { name="APCtools"; version="1.0.1"; sha256="1aq55a3glsqyp7gzly1nfaxxlyiq2ki6h9i5qwgz7dbni4vwggd4"; depends=[checkmate colorspace dplyr ggplot2 ggpubr knitr mgcv scales tidyr]; }; APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; @@ -98,7 +98,7 @@ in with self; { AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; ARCokrig = derive2 { name="ARCokrig"; version="0.1.2"; sha256="0pk0y0gsw681py0vwizxvh1jqjnapzqfr0mbdpli1sray55xbjr2"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo RcppEigen]; }; - ARDL = derive2 { name="ARDL"; version="0.2.0"; sha256="19ggs0ipqnivdwvx5ry7i7p2yvrrqj8bydcka44plh44kqa35kc8"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; + ARDL = derive2 { name="ARDL"; version="0.2.1"; sha256="151mw6z67ssa3pykmbcijgcw4msbrpn1l4b5qj3pz9v9k3j05idl"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; ARIMAANN = derive2 { name="ARIMAANN"; version="0.1.0"; sha256="0n4n9srl56s6pxjib43ksb9rahmsb509sfvpjk4py8m4r01ab2m2"; depends=[forecast tseries]; }; ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; @@ -113,12 +113,13 @@ in with self; { ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; }; + ASRgenomics = derive2 { name="ASRgenomics"; version="1.1.3"; sha256="1yl3q1fjfyl0v0wpbgnbh8zj5j8zi1imf19cj66fdvji3i4c4lsi"; depends=[AGHmatrix cowplot crayon data_table ellipse factoextra ggplot2 Matrix scattermore superheat]; }; ASSA = derive2 { name="ASSA"; version="2.0"; sha256="10r5406g6i0959k1zm5h9cbwqmnyf7zy80ahiqsyrapm3g5rphxg"; depends=[]; }; - ASSISTant = derive2 { name="ASSISTant"; version="1.4.2"; sha256="1vh1glk83lg010v2fc289gr6xy0dzbrqcjfva2mmaymk6v78a1w5"; depends=[dplyr knitr magrittr mvtnorm R6]; }; + ASSISTant = derive2 { name="ASSISTant"; version="1.4.3"; sha256="0apaj4lfkbg08xrw8mknf50s1vyd4j5mbwciwgblq7ydh3pyjxaj"; depends=[dplyr knitr magrittr mvtnorm R6]; }; AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; ASV = derive2 { name="ASV"; version="1.1.1"; sha256="1cwsfc5mylivg65mb93d0v8kalirq5vwjx78fjyylsdc4w33gzqb"; depends=[freqdom Rcpp RcppArmadillo RcppProgress]; }; ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.57"; sha256="15ih8jmgp20iskgbn8v5gbbh3d724gmv0943lc09yvja7b6wxvba"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; - ATNr = derive2 { name="ATNr"; version="1.0.1"; sha256="1ryh99yifldml6fpprz01lap1nzlifjb2w8wgnmx95byz7gayrm9"; depends=[deSolve Rcpp RcppArmadillo]; }; + ATNr = derive2 { name="ATNr"; version="1.0.2"; sha256="0p6pya91aklylig80xca68n5xx0ngzn8p0ba8sfrznqj53g8x4r5"; depends=[deSolve Rcpp RcppArmadillo]; }; ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; }; AUC = derive2 { name="AUC"; version="0.3.2"; sha256="07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3"; depends=[]; }; @@ -134,6 +135,7 @@ in with self; { AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; ActCR = derive2 { name="ActCR"; version="0.3.0"; sha256="1w3xkq3wanpa2j3rfzzdvad2r3vzzvp76kp56mh2s07p3xql6rv0"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; ActFrag = derive2 { name="ActFrag"; version="0.1.1"; sha256="08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1"; depends=[accelerometry dplyr ineq survival tidyr]; }; + ActiSleep = derive2 { name="ActiSleep"; version="0.2.1"; sha256="0nkfddfv0g1bvsg6811lrmy0cx7knmi225snyp22bh9ly9fnlqp8"; depends=[accelerometry DBI dplyr lazyeval lubridate RSQLite stringr tibble]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.2.0"; sha256="0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; ActivePathways = derive2 { name="ActivePathways"; version="1.1.1"; sha256="1crq164vyqhdq5y3q09k3m5zljqrhcd5ak0jrc0xqvzf0pasml2m"; depends=[data_table ggplot2]; }; @@ -142,7 +144,6 @@ in with self; { AdMit = derive2 { name="AdMit"; version="2.1.9"; sha256="0dlmqpwqfhhc4z2xr44f00xsg0hbmw2c5z2d4pbifv36jlrdxbip"; depends=[mvtnorm]; }; AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; - AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.5.6"; sha256="076jjnqp4ayq4kh95qns4kfzfvl6mjllhsq6hfp66bww7w976xxh"; depends=[DataVisualizations pracma Rcpp shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; @@ -155,7 +156,7 @@ in with self; { AeroSampleR = derive2 { name="AeroSampleR"; version="0.1.14"; sha256="027lf82kpllz8v0g2mbbjx1yc2nmw5i0pfhmnhay3ms0yc4p4sbm"; depends=[dplyr flextable ggplot2 ggthemes purrr stringr tidyr tidyselect]; }; AggregateR = derive2 { name="AggregateR"; version="0.1.1"; sha256="1s2q888bqx6ilisv5s4g8ryja97nz6cz4ycm4sw1i63l5wjrwljc"; depends=[data_table NCmisc tibble]; }; AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; - AgroR = derive2 { name="AgroR"; version="1.3.1"; sha256="1a08wm33rpnchxwy1pn298wwgg2zw5a9xih92i843ch43pw02dis"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel gridExtra gtools lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; + AgroR = derive2 { name="AgroR"; version="1.3.2"; sha256="098ichvfsx7v1mawwy4mcxw7llfxkp7iqhnkawqq5f4lsjhr376h"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel gridExtra gtools knitr lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; AgroReg = derive2 { name="AgroReg"; version="1.2.7"; sha256="0kn7prhd9fzp2ibj12nz5cj5lag6bn7bmgva2xl7cf2b6pwmfijl"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; AgroTech = derive2 { name="AgroTech"; version="1.0.2"; sha256="0pfw0sps9fbzzyy4d803j9fbg6a23nj18rks0bnrj9hms7a3vwfs"; depends=[crayon ggplot2 ggrepel gridExtra lmtest nortest readxl xlsx]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; @@ -166,10 +167,10 @@ in with self; { AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.1"; sha256="1cmmxwp3qq28hln6k9hfv61b53nwx08iidhcxj8bdwv7msyp9f8k"; depends=[adegenet BiodiversityR vegan]; }; Allspice = derive2 { name="Allspice"; version="1.0.5"; sha256="0a99iqb01snza0ad07lrzmn88vpq8wvx5vjr8fk0wbzihxzbzn4y"; depends=[]; }; - AlphaHull3D = derive2 { name="AlphaHull3D"; version="1.1.0"; sha256="131wcx5yagsl42qwwcx84shd4v1sh8g2381njcqq5lsa2y2rsarh"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; - AlphaPart = derive2 { name="AlphaPart"; version="0.9.7"; sha256="0v1ywxlx248v6nqxcfh0d1mgpzs08vxww807c60mq7d4hqdlar82"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; - AlphaSimR = derive2 { name="AlphaSimR"; version="1.3.1"; sha256="1i972xax6axrmxjqh5v217f3zwmdbfhm0zfjc6gkmhydddp0zn8k"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; - Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; + AlphaHull3D = derive2 { name="AlphaHull3D"; version="2.0.0"; sha256="1jp4m2yd9z8m4gz5hfa08qm02kalrzy6pbjf3rfcb0xjglk1lngr"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; + AlphaPart = derive2 { name="AlphaPart"; version="0.9.8"; sha256="1ih76v3kgnladqq3nvlqrz5sqkg1j97m778kchz6k05cjxhj8l4q"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; + AlphaSimR = derive2 { name="AlphaSimR"; version="1.3.4"; sha256="0b8qp3azia9sfl458y8zgxxxpzs7l2bwpkdnh1vza2ak61f4q85w"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; + Amelia = derive2 { name="Amelia"; version="1.8.1"; sha256="1r27zjlr8ld932lr6dn79cravss17gry6p0mxgdlbj6g58mfc30j"; depends=[foreign Rcpp RcppArmadillo rlang]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; AmesHousing = derive2 { name="AmesHousing"; version="0.0.4"; sha256="080r0fkmqsdrjgwbmdzacnkmd8py611z54i6r7nzj14r295d5qhk"; depends=[dplyr magrittr]; }; AmigaFFH = derive2 { name="AmigaFFH"; version="0.4.1"; sha256="1iv89nqlqc5lrnz9r56ajgmb54pkk1zafihh1m0528i0hg4l7qxm"; depends=[tuneR vctrs]; }; @@ -185,7 +186,7 @@ in with self; { Andromeda = derive2 { name="Andromeda"; version="0.6.1"; sha256="08n6ccx009mfnzmhgwzracwyf8ad40crmvb0wyg304dn2abgybn8"; depends=[cli DBI dbplyr dplyr hms pillar rlang RSQLite tidyselect zip]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; AnimalHabitatNetwork = derive2 { name="AnimalHabitatNetwork"; version="0.1.0"; sha256="1bhqypkiw5v9w26jbdmhndqj5hjfmf7zwivrq2hgs0zcjxwa8gfn"; depends=[ggplot2 igraph]; }; - AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.6"; sha256="182m711l5m037mfyvr6334pmv338fxb3007j6713abvylsh6x06q"; depends=[Biobase DT ggplot2 ggpubr pheatmap]; }; + AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.7"; sha256="0715bpifj8r4ji0m89wk4x7vd3pwx8kqy9vs8m0ivmq7bb56nx0b"; depends=[Biobase curl DT ggplot2 ggpubr httr pheatmap xml2]; }; AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.3.0"; sha256="1q5yxzzmzvw1r64r4y0xh1fiyhaqbx5q4lzpawqaggra4w9igdl8"; depends=[ape seqinr]; }; AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; @@ -193,6 +194,7 @@ in with self; { AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.17"; sha256="0vxjlzxv16bygw8n57f25msq5bd1dydg41my92ximah0nzzvbg41"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.24"; sha256="1400n46kmaa074m6yilmkvcn83dyxk2w76x8cny1dygfzsnhhjxl"; depends=[DescTools openxlsx]; }; + AnxietySleep = derive2 { name="AnxietySleep"; version="0.0.1"; sha256="07im2gjq62y3vgim9j0ar29qhmi7r79zbjdi024h04mxrwpic5z6"; depends=[data_table lifecycle]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; @@ -206,7 +208,7 @@ in with self; { ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.8"; sha256="00d8lpasz96l55v3982mqg85b237lxvsjl65p288yzj87860v2kj"; depends=[coda digest dplyr ggalt ggplot2 ggraph gplots gtools hdrcde magrittr readr reshape2 shiny toOrdinal]; }; ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; Arothron = derive2 { name="Arothron"; version="2.0.3"; sha256="0rb1n9pmp7q2wdihn26kbpyvyznlk8mrs8c26l1ar4q29jw44rw4"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; - AsioHeaders = derive2 { name="AsioHeaders"; version="1.22.1-1"; sha256="15cd85zkjzpz321pnnjwn0g2v4rza6cdqanx89p5j3nrfihjrh32"; depends=[]; }; + AsioHeaders = derive2 { name="AsioHeaders"; version="1.22.1-2"; sha256="192qxayrpvi02wrqq2h5cjc92aaxrsgw7z32r8qk5imqg3mc0a8n"; depends=[]; }; AssetAllocation = derive2 { name="AssetAllocation"; version="1.0.0"; sha256="02r9a21696y1gj5qw01jddnyda6hm962l1am7igrqyywh05canch"; depends=[NMOF PerformanceAnalytics quantmod riskParityPortfolio RiskPortfolios xts zoo]; }; AssetCorr = derive2 { name="AssetCorr"; version="1.0.4"; sha256="0r98li2lxhfap1hn6h0l78phpm9m1nlcqhwzpq0ahhw0b1rd4qkf"; depends=[boot ggplot2 knitr mvQuad mvtnorm numDeriv qpdf Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-3"; sha256="199ygwfddpzxnj388gxkn7xyhnvjr24f5jg4lnydh0z7pb96pm5r"; depends=[deSolve polynom]; }; @@ -253,13 +255,14 @@ in with self; { BAMBI = derive2 { name="BAMBI"; version="2.3.4"; sha256="0ksc4nccd89fsdmm70q9al0ww3y645navkvqmh7lb1imgnl5bwph"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.10"; sha256="1ng7pf08nk7y00146qvqr9099kpvbgn1swi3cawzr9zd55gv7qvr"; depends=[ape gplots Rcpp]; }; BANOVA = derive2 { name="BANOVA"; version="1.2.1"; sha256="07ghmzsb77vcd3snmg59spp60j603gawnqs847x1x44pnxs9l4wl"; depends=[coda rjags rstan runjags]; }; + BAR = derive2 { name="BAR"; version="0.1.1"; sha256="0bcq6lvijq1vxri2dbhnqcn46f799h3ag974zgcdpx4c5apph04w"; depends=[]; }; BARIS = derive2 { name="BARIS"; version="1.1.3"; sha256="1ccwxc7s1qk9zcs546kkpwzv26rxswrydnblvg4b8vbm5790n0gv"; depends=[checkmate data_table downloader dplyr glue httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; BART = derive2 { name="BART"; version="2.9"; sha256="1yzwiyjc2gq2vvw5z2psmyqbbb1kq0xvsb0zingcn8qikw45mm5m"; depends=[nlme nnet Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.6.3"; sha256="0l7x1zi1q1yjmaw0wwrp0aarlbjd6zxzi7brc5q4ipb52hw8xljr"; depends=[]; }; + BAS = derive2 { name="BAS"; version="1.6.4"; sha256="1w7y3cp6j1pak2wq6wf9wffas0yvsz716qbva2bx9nln72gr05z5"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.2.2"; sha256="14zimfdkpsil22n1z4ldpi9smmja5kf7qqlklr5sr7y5avnh0hd9"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.5"; sha256="09g2h38kz1g9kkjc69si5d6z6fkayys9hinjs3p6dn7sx7zn2bx1"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.5"; sha256="06nshxxcj9nqdvdhr9lb55p2hsnbcdcqhnp0r9hs8yp3d1h7cv08"; depends=[Biostrings igraph randomForest]; }; - BAT = derive2 { name="BAT"; version="2.9.0"; sha256="1i47yr0q9v4ryqwx0rlyp0kjjczgiprm7by4ykbwmgzyl9y0gkgp"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; + BAT = derive2 { name="BAT"; version="2.9.2"; sha256="1h90fqcnd6w4w0bjccz5zghqb05gddbiz3imfpbw14p23h11w3wq"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-10"; sha256="1yn79nkwi33d6qsiklay3ngk26dvi44lap59zp545gidvn9fbir6"; depends=[coda mvtnorm]; }; BAwiR = derive2 { name="BAwiR"; version="1.2.7"; sha256="1vvym7bbfbi1x91962nfcqql0fiyv4svdk5329rq43nnh188i456"; depends=[Anthropometry dplyr ggplot2 ggthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; @@ -285,13 +288,13 @@ in with self; { BDEsize = derive2 { name="BDEsize"; version="1.6"; sha256="0dyjd5f1cqmzqnrbxz06pbxrk6gjrmsh2x6p7qllczvlmm7jdm5i"; depends=[fpow ggplot2]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.70"; sha256="1s148fvvg1c0n4swsvcinlwckj86jys5nvwp4wlyzh3aw9siyqz7"; depends=[ggplot2 igraph pROC]; }; + BDgraph = derive2 { name="BDgraph"; version="2.71"; sha256="1lihsbliq7f91ywdq5cabzd5fbyhb10h62ss3n2l7i2fdglb77d1"; depends=[ggplot2 igraph pROC]; }; BE = derive2 { name="BE"; version="0.2.3"; sha256="1k2895w8jd0scd6nxh3jyxd7vz9hcapna9xkmis6i3byly5bvvan"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; - BED = derive2 { name="BED"; version="1.4.8"; sha256="0626v6qrj2rhjfq0pbk2js5asrc810hxq5169xq5armmg7hblg4r"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; + BED = derive2 { name="BED"; version="1.4.11"; sha256="0rhpy80fc5vm6zphcs34fxmy0jlpx3dsapcsksxagprm7ijjdmh0"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.6"; sha256="0zqqjyal9wjjl1aayp324wdrq3aaqr7s5j912yb3rrvq4gqcfy0d"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.3"; sha256="1pq333x1shxw3wcqgcb4gqg6rwa0hyc24rib235q4zg10r2gyrbm"; depends=[crochet]; }; - BEKKs = derive2 { name="BEKKs"; version="1.3.1"; sha256="0awlvd20gsrzbpnhkk7sqsxb4g13y6h42pxgj3isck9d0kdfs7i3"; depends=[forecast future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr moments numDeriv pbapply Rcpp RcppArmadillo reshape2 xts]; }; + BEKKs = derive2 { name="BEKKs"; version="1.4.0"; sha256="12amk1p99nrh747m832b8sd4lrm88s0dax6fphxcx9dm57r94av5"; depends=[forecast future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr moments numDeriv pbapply Rcpp RcppArmadillo reshape2 xts]; }; BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; @@ -310,7 +313,7 @@ in with self; { BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="2.1"; sha256="1wcsgzx69qrw1bnipb9ry6162mirk6miw62w8pcvazqj91aljfhd"; depends=[oro_nifti Rcpp RcppArmadillo wavethresh]; }; - BHSBVAR = derive2 { name="BHSBVAR"; version="3.0.1"; sha256="0k4iklbazw4fbwfd0nhg943ndwrhpxxlbzmfj3c10in84vz2p6v0"; depends=[Rcpp RcppArmadillo]; }; + BHSBVAR = derive2 { name="BHSBVAR"; version="3.1.1"; sha256="184dhaajjzplslbfjmdm9zyr7h39zi1h3p549lac2sy6mrkglrc0"; depends=[Rcpp RcppArmadillo]; }; BHTSpack = derive2 { name="BHTSpack"; version="0.6"; sha256="01y3ly83i70lkg2kgbw1r7r1g4k9rk41qyzzscbp8zgc9z63ll8z"; depends=[R2HTML xtable]; }; BI = derive2 { name="BI"; version="1.1.0"; sha256="1iv721wbh64qyij58llkxgz1s1rsc3x68h5gz69fxbf4x9cv2vlr"; depends=[]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; @@ -322,11 +325,12 @@ in with self; { BINtools = derive2 { name="BINtools"; version="0.2.0"; sha256="0x97h0b2krdgrd0x266fidj77an3dq8mf9lnbas9112p4mhkmk58"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringi tibble]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.8"; sha256="18ypdqh5fc9a7yq8y5insadmvamrzrd9yn00g1cj1lxii0jn4r43"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.9"; sha256="1j6fbrvhiaz04fpybdldjk2prg3n5ayzvxqbx0g0vbna54kd1vz6"; depends=[ecodist nlme]; }; - BISdata = derive2 { name="BISdata"; version="0.2-0"; sha256="0d5dxb0jmiazbkmjmm0babv3hxgx74b9v7j08yhy5w3zl1fvlyr2"; depends=[]; }; + BIS = derive2 { name="BIS"; version="0.3.1"; sha256="1nmbcdk4p34grss2bwwqw5zynp5c2xfhhqs9h9s85nhdm7ark78v"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; + BISdata = derive2 { name="BISdata"; version="0.2-1"; sha256="0xmm40d9ag2g5j0lsy46ig3plzcqrw2p3iaciimw2y0v4fa8n3gh"; depends=[]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; BLOQ = derive2 { name="BLOQ"; version="0.1-1"; sha256="0qs4pnzpfwkii6wpd8my34zw9k003b3is0y0aj1lhcm0qnn1p8h4"; depends=[maxLik mvtnorm]; }; - BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.3.2"; sha256="0prc2m3hixv8hmnyhr5549406ln509llkhpqra2ifpzif0waw704"; depends=[Formula Matrix mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; }; + BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.3.4"; sha256="07q5ifsvw1ccxys6y01ldh2n9v7chyv88rda1jbznb3nnwka2wh0"; depends=[Formula Matrix mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; }; BLR = derive2 { name="BLR"; version="1.6"; sha256="1wivqh19kxgr7nwa09s5ay6x1yidjk4hqanv0mzb1nbik98w9024"; depends=[]; }; BLRPM = derive2 { name="BLRPM"; version="1.0"; sha256="15q0jkw4swz35c58nv23k8g1dy1kkbqh5aydjck7pd0fmppqrhpx"; depends=[R6]; }; BLRShiny = derive2 { name="BLRShiny"; version="0.1.0"; sha256="0z3gr0bvjs7y0jkygh7h9habnk2807cwziajpgfmb7dxdrhccj68"; depends=[caret dplyr e1071 ggplot2 rhandsontable rmarkdown shiny]; }; @@ -343,18 +347,16 @@ in with self; { BMTAR = derive2 { name="BMTAR"; version="0.1.1"; sha256="0c70vkgv2sdci33yrk2n297k105wnlxj1qchskdparkiipf47xsh"; depends=[Brobdingnag doParallel expm ggplot2 ks MASS MCMCpack mvtnorm]; }; BMTME = derive2 { name="BMTME"; version="1.0.19"; sha256="07iw6aqcwn4a29b85cavfw6hp66csdzlaqwas40zr5ga3kp72j51"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; }; BMisc = derive2 { name="BMisc"; version="1.4.5"; sha256="0pdp8cnqj8cmyhppxrkqlckg3xlcswra9vsnjwwdlnvn8b00m5d1"; depends=[data_table Rcpp RcppArmadillo]; }; - BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.3"; sha256="1dnylvag24zqp93acdbn0ilbdzbn250pjjp6hjdd9d1zvla2ck85"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="2.0"; sha256="1ymvklv6d9684xzwdkvaxdjd1q20xmsf6kkfibn2wphlaqs2rh2n"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2021.5.4"; sha256="16hm81wn08fjdamikzrmhpbsz31phkqxdqhp23w0pbxczk9gll47"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; }; BNPmix = derive2 { name="BNPmix"; version="1.0.2"; sha256="114gn80b7yyl6hi5cdnc0rp2hzy7pp8z6q4is1h29yxlqa6acbq4"; depends=[coda ggplot2 ggpubr Rcpp RcppArmadillo RcppDist]; }; BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.1.6"; sha256="0ig531n9sj50wn5nwljc2x4wijv5i28jx73knzz2kshb56p8sl7l"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; + BNSP = derive2 { name="BNSP"; version="2.2.0"; sha256="105564bhknhrcv92fbzk4vka8jsvq75rdzvlzgxy8cgiraxqldv0"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; BOIN = derive2 { name="BOIN"; version="2.7.2"; sha256="03h6s1nn87xgkk830wls06mgflg0arq084k74gfp1k4wccwkjr5y"; depends=[Iso]; }; BOJ = derive2 { name="BOJ"; version="0.3"; sha256="1x9lz01fjdk0aybs6zsbbq2xfjvh99qiimmnrkbcd6sj880vn3a3"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; BOSO = derive2 { name="BOSO"; version="1.0.3"; sha256="0zax40x2d62vcn8zznmzmykk33mv4vbjfl88i3r1djbvalcdf5cf"; depends=[MASS Matrix]; }; BOSSreg = derive2 { name="BOSSreg"; version="0.2.0"; sha256="0ln4nx0jlvz5kqk9qkcl8a2cyhsdcqqfs5112qcaabjiwjnvla7w"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; - BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; @@ -365,11 +367,13 @@ in with self; { BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; }; BSBT = derive2 { name="BSBT"; version="1.2.1"; sha256="0ibqg3jr7l25aikz09s8v5w1z541dsw8pr30ixf6d1bly5bw5ahy"; depends=[expm igraph MASS]; }; BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; }; - BSL = derive2 { name="BSL"; version="3.2.4"; sha256="16w5lkzwq8b393cxga4cdcwk1f185g24k7lq0xr842g94cc8jdpl"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; + BSGW = derive2 { name="BSGW"; version="0.9.4"; sha256="05gr0p9fmj5560s083iss8j4gyh5rk0kdi3qhq5dzr9mfzy0n12q"; depends=[doParallel foreach MfUSampler survival]; }; + BSL = derive2 { name="BSL"; version="3.2.5"; sha256="12fksih33a4r6dd8flv7s1hidazhfqcbyvvnppp25rn6jb7p6344"; depends=[coda copula doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; BSPADATA = derive2 { name="BSPADATA"; version="1.1.0"; sha256="190zmjvw5q5gg47g21n2imclz1qg585cvjxl501mm910gx50rldb"; depends=[coda mvtnorm pbapply pscl spdep]; }; - BSPBSS = derive2 { name="BSPBSS"; version="1.0.4"; sha256="05wfcybcygwswm4syhcaa8fzbmk044lh7mm85m1fapgwgqviswkl"; depends=[BayesGPfit ggplot2 glmnet gplots gridExtra gtools ica movMF neurobase oro_nifti RandomFieldsUtils Rcpp RcppArmadillo rstiefel svd]; }; + BSPBSS = derive2 { name="BSPBSS"; version="1.0.5"; sha256="0ax92x657f8jm731wc1qry19mbi4d3xxcxh5zd07w3705va4k82y"; depends=[BayesGPfit ggplot2 glmnet gplots gridExtra gtools ica movMF neurobase oro_nifti Rcpp RcppArmadillo rstiefel svd]; }; BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-3"; sha256="1nqj8w8ilyhladjzhjp1rhi3ff7ik1m76pdhgs16ph7pzdw36w6i"; depends=[fICA JADE]; }; + BSSoverSpace = derive2 { name="BSSoverSpace"; version="0.1.0"; sha256="117av0y5bw44z6293fvbxmf1xqhar7c4lf5z09xrs78dn1xdsnbs"; depends=[expm rSPDE SpatialBSS]; }; BSSprep = derive2 { name="BSSprep"; version="0.1"; sha256="0dkhx8vx9kg902i6nzkzbighf2szq12l0p8iwinlpb2qdf526lk6"; depends=[Rcpp RcppArmadillo]; }; BSW = derive2 { name="BSW"; version="0.1.1"; sha256="0l6sw8lyk9mxfdw4s72hz6a0b30gi2a2vlcndkgahjlym6i5bz83"; depends=[Matrix matrixStats quadprog]; }; BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; @@ -386,10 +390,8 @@ in with self; { BWGS = derive2 { name="BWGS"; version="0.2.1"; sha256="1473lvkmpf2dsgnccwl5a8wp9yvddciqdql4naba4lwghimxy39w"; depends=[BGLR brnn e1071 glmnet randomForest rrBLUP stringi]; }; BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; }; BaM = derive2 { name="BaM"; version="1.0.3"; sha256="1mfbz8hp6cd170d5y6iva2dbd31rlg6z2dgnfvjp9myqa4cjy40y"; depends=[MASS mice]; }; - BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.5"; sha256="09wvfg44g9j3gq9arkm2ajm8l4y7gna4fh49ihvmjzqdvsl6gkq6"; depends=[snowfall]; }; BaSkePro = derive2 { name="BaSkePro"; version="0.1.0"; sha256="06wnl128anr0isq07qn2xr426c8iybmrbixz93hxx1pshcm64f37"; depends=[MASS]; }; - BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.2"; sha256="0aal641vfbjk3w6ipwbqqmm9nnxs962hjmpph9wnqaqk5r6s7brs"; depends=[ade4 mvtnorm]; }; BalancedSampling = derive2 { name="BalancedSampling"; version="1.6.3"; sha256="0sarc0xmlg7w4j125i1igbwrqdwfxxb5jcdl44b70q672y6z30vr"; depends=[Rcpp SamplingBigData]; }; Ball = derive2 { name="Ball"; version="1.3.12"; sha256="103lm9mlrqlqqn40bj4bsw0g9in5vka6q4kpqqzw6y3pbgd6596p"; depends=[gam mvtnorm survival]; }; @@ -406,6 +408,7 @@ in with self; { BatchJobs = derive2 { name="BatchJobs"; version="1.9"; sha256="0xsw25j2ks9bqgz189qdcyj8hzz93snknlik83nj04s6vy0w7aax"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BayLum = derive2 { name="BayLum"; version="0.2.1"; sha256="0h0x18al2rqs6wjf4jayc1qv8lkn7rvkbjmr5h1gcggn2c4byyjn"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; + BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.1"; sha256="1vlljv7xdfvbrbxqdi91xrz1aga04aa1pb23kvnmahm2s261map1"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; BayesCACE = derive2 { name="BayesCACE"; version="1.2.3"; sha256="12vw401d692x2692sykhngi5fk8l6z5724lym97zz9z2wyj29zyk"; depends=[coda forestplot lme4 metafor Rdpack rjags]; }; @@ -427,14 +430,15 @@ in with self; { BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; BayesMRA = derive2 { name="BayesMRA"; version="1.0.0"; sha256="005pygpa8bmr153naxnag7kn876lqwq34d8pzbj954nivlxl4zaw"; depends=[fields igraph Matrix mvnfast Rcpp RcppArmadillo spam]; }; - BayesMallows = derive2 { name="BayesMallows"; version="1.2.0"; sha256="1dgvrr6ihfxrvpp5s2fmbl4kp8sh0xvpjggv47gb2c917ppjpjrq"; depends=[cowplot ggplot2 HDInterval igraph PerMallows Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; + BayesMallows = derive2 { name="BayesMallows"; version="1.2.1"; sha256="100mfsar76yk8cqp55r6lwd973l8s7yg249vfssx327a31rh665m"; depends=[cowplot ggplot2 HDInterval igraph Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.1.0"; sha256="1cgcx8kvn0bmn8kmq8ri3k98yx085d2qndislbwhn833ws6vkl88"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesMultMeta = derive2 { name="BayesMultMeta"; version="0.1.1"; sha256="09x41r5lhr2dq56b05f0aj8v4s7084d4z90qjqwdkv8zgk664ki0"; depends=[assertthat Rdpack]; }; BayesMultiMode = derive2 { name="BayesMultiMode"; version="0.1.1"; sha256="0kjv9snqnpamb0ph6qdimn1zdyp961yfi98xmbdy5dcqd5jcy3jg"; depends=[dplyr ggh4x ggplot2 ggpubr gtools magrittr Rdpack stringr tidyr]; }; BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.2"; sha256="0va4gvyfwfdk3yvhdyxc49qlmzxfblwlmwqh79b93zkv8239kkk1"; depends=[FNN Matrix nimble StatMatch]; }; BayesNetBP = derive2 { name="BayesNetBP"; version="1.6.1"; sha256="1c6a82qlcrpbb2c4zp3gk24wcgw6x62lm8hm6n2l1r307dxm2rpb"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; - BayesPPD = derive2 { name="BayesPPD"; version="1.0.7"; sha256="1px8qkkranycj9q3ym7cj3g24y0wkayvp23175x1xp1i3k9k2ray"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.2"; sha256="1417zd1n5sip999n6q6bgs85c0000ksl73a4p94y0lmdn27i8pmj"; depends=[coda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag]; }; + BayesPPD = derive2 { name="BayesPPD"; version="1.1.0"; sha256="0nyzkg2lcvfk61xmxv7fjz626ik5bf9dbxfh6zyvjd9kjzw9kgdl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; @@ -454,9 +458,9 @@ in with self; { BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; - BayesVarSel = derive2 { name="BayesVarSel"; version="2.0.1"; sha256="1107amhj3bclc434qizffjfmsa2w36qkp6gq7vgl0hwv0ncc0vyn"; depends=[MASS mvtnorm]; }; + BayesVarSel = derive2 { name="BayesVarSel"; version="2.2.3"; sha256="0kdi1v7wi22p83fl7ldyzhc6gh4pn8ig339yz7a36wl5xr80cij0"; depends=[MASS mvtnorm]; }; BayesX = derive2 { name="BayesX"; version="0.3-1.1"; sha256="0630p904fba4ink1rkccarhlqkz73fxqiy255jc5vb1qi2awl5vd"; depends=[coda colorspace maptools shapefiles sp]; }; - BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-2"; sha256="04p17d87b2gg3p08jmdmg570ppdzci8r4qxcq115qs58bvqih47v"; depends=[]; }; + BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-3"; sha256="1c598sir81xpb35famip6lcfr4cnvm903f1vhajjz04yd13fbwh9"; depends=[]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.1"; sha256="1b8ndwnwsj2wzbjp3rivdsx5nsfg2rgv6mnlyp7jxaksxvf4ray7"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; BayesianMediationA = derive2 { name="BayesianMediationA"; version="1.0.1"; sha256="1ygc0xhk7mk7pkqn0v9n23j1m75rr1r2ar30r386c1av3jh7krnw"; depends=[car gplots lattice R2jags survival]; }; @@ -465,13 +469,13 @@ in with self; { BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.4.1"; sha256="0j8fzn6xza3vg7qbfxwhjncll9yx985660dr75y9qhhz84jis3dv"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; }; Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; }; Bayesiantreg = derive2 { name="Bayesiantreg"; version="1.0"; sha256="0m8snwhjskwxdm0a2wsmf1j7d0xxvg4sh0ix64zss71l610wica7"; depends=[MASS Matrix mvtnorm]; }; - Bayesrel = derive2 { name="Bayesrel"; version="0.7.4.4"; sha256="0i5kma649f2f079205kki05js0i1aw2j10aj6fgmg3mjj8q9cn0p"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; }; + Bayesrel = derive2 { name="Bayesrel"; version="0.7.5"; sha256="06y3f69hccpf92mrdw03alcmnn5r4rg9svcqyvz44x1hjn02l2ah"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; BeastJar = derive2 { name="BeastJar"; version="1.10.6"; sha256="0581q9m7lb681d12vld231vn6wqv5s2sqkvav4fd0xllvjighlx7"; depends=[rJava]; }; BeeGUTS = derive2 { name="BeeGUTS"; version="1.0.0"; sha256="0b0r8srh68m2kxdyvfx5kxrpchish5la7h44wkxfa59gcbsg96rc"; depends=[BH cowplot data_table dplyr ggplot2 gridExtra magrittr odeGUTS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; - Benchmarking = derive2 { name="Benchmarking"; version="0.30"; sha256="0jmdp8qkbg0vjxbvx7mjh3l0yfq2zs63g6bsm6ksi56yvx7l9rvi"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; + Benchmarking = derive2 { name="Benchmarking"; version="0.31"; sha256="0gg4yay098ga08ns5ybn7s467prwbq0a94a0nfah30jy36ggdfs2"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="5.0.5"; sha256="0plidwnyh38hrkbd3ild476f54bz6i70r0h3chxh3wp35rl04ikl"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network Rglpk statnet_common]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; @@ -493,7 +497,7 @@ in with self; { BiasedUrn = derive2 { name="BiasedUrn"; version="2.0.8"; sha256="0mmq8zf52p6y76nqm0fcvvg8bdlrfl12mlfr9fznz9zvm26pypi0"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; }; - BigQuic = derive2 { name="BigQuic"; version="1.1-11"; sha256="1dxzkj26hd05mi02i35k7dknlikjfbsgvjrqwf42k3kjpf501xh4"; depends=[Matrix Rcpp scalreg]; }; + BigQuic = derive2 { name="BigQuic"; version="1.1-13"; sha256="14mz9ry72zc4c0fhc59dima66qnksr1masvhzm1j8z8r11w7qjhd"; depends=[Matrix Rcpp scalreg]; }; BigVAR = derive2 { name="BigVAR"; version="1.1.1"; sha256="1pv2xc6j7szcaqqqjnriaxd17snls37b7nckmk97dan4zxc2vr6v"; depends=[abind lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.9"; sha256="1m1dcj0ryjicaqjlkch7aymsklmvjvn2dvnbssi1cpi54bzn8l7g"; depends=[mclust oompaBase]; }; BinGSD = derive2 { name="BinGSD"; version="0.0.1"; sha256="0ygr5na7s82xa6vv9f3j6ns5sfhdacyykl1fg422lpkwbss39dnn"; depends=[mvtnorm]; }; @@ -508,22 +512,19 @@ in with self; { BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.3"; sha256="0fydh3pp7y0glk2rhihcslzx10hgn5la922jbnqzg2nplvzv7ybj"; depends=[expm Formula lmtest numDeriv]; }; BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.4"; sha256="1gl57r47p5z1wzs94xzc26j2r8z5hpqr4163b01x6jwzvbrlfwhz"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; - BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioInsight = derive2 { name="BioInsight"; version="0.3.1"; sha256="129w9643l01y316hm0qcsmxzh5lsdmq6xmiz4rhmdh0dcnw2s93n"; depends=[edgeR knitr limma RColorBrewer wordcloud]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPETsurv = derive2 { name="BioPETsurv"; version="0.1.0"; sha256="0svwf8pzvlmlp8aacf70hzlg2h81m6lyhh4p73ixqw5v9bnyq6m0"; depends=[ggplot2 gridExtra survival]; }; BioProbability = derive2 { name="BioProbability"; version="1.0"; sha256="051m761zf079s0p4q0ambwqc22qjz2yajxrsmnjnxvqiaadaj1q7"; depends=[]; }; BioRssay = derive2 { name="BioRssay"; version="1.1.0"; sha256="0bs05vkidf7rfhb9s9vby7k4q9w7vwanlvk034kspqp4ydkhpm5n"; depends=[colorspace]; }; - BioStatR = derive2 { name="BioStatR"; version="3.1.2"; sha256="1fs5hzsb770ygcysmwl8dyfkrq3nwhsfw4jd73gbdw3x8dqxc6c4"; depends=[ggplot2]; }; + BioStatR = derive2 { name="BioStatR"; version="4.0.0"; sha256="0gfwjvxbgfaw7mrbac011x09lxcmsdbp3ljc36hpfa54gqj2ckkc"; depends=[ggplot2]; }; BioVenn = derive2 { name="BioVenn"; version="1.1.3"; sha256="0nwqfb65vhr2246w17nv27v186gzl5n3jxnqx7r9rq525qvyx0rg"; depends=[biomaRt plotrix svglite]; }; BiocManager = derive2 { name="BiocManager"; version="1.30.19"; sha256="1qhq1k1sr23bi2kmnd99mjs3ns0c2p20pmr2iq8a6bxbb0fap5v8"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.5"; sha256="1phnq6zq96i6z7jj196png3spjpbbx5p2s8iya0vvbfik12ivzkc"; depends=[]; }; BiodiversityR = derive2 { name="BiodiversityR"; version="2.14-4"; sha256="05080cfqcmhxnbd4fyxhdd2kxp4ps413mk44wdh7hijayk4df7q0"; depends=[ggplot2 Rcmdr vegan]; }; Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; - Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; }; - Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; }; Bios2cor = derive2 { name="Bios2cor"; version="2.2.1"; sha256="0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z"; depends=[bigmemory bio3d circular igraph]; }; Biostatistics = derive2 { name="Biostatistics"; version="1.0.4"; sha256="1fcrj53rqg7mdhrrsl95l0n6hycb0863isch2f6zzsqdqbxhq7dh"; depends=[learnr]; }; BipartiteModularityMaximization = derive2 { name="BipartiteModularityMaximization"; version="1.22.415.2"; sha256="05a00zwhdmh614m937mx6alarac5inrzp78xjhqhwf26gvg7lpb9"; depends=[Rcpp]; }; @@ -555,22 +556,23 @@ in with self; { BoneProfileR = derive2 { name="BoneProfileR"; version="2.4"; sha256="0mm2vjg43p9abfydaw7qw0q9cwpvzxic914rpdk2dshyva6dxyx5"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.7"; sha256="1b87ncwz1bsjym328qyjwhxqi7c6x05y6g1nc43y2fz5l5312nmv"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.9.10"; sha256="1w513z3bqr9fbvml1qycaaivsvwyx77wq11w76dzggddwgwisg20"; depends=[MASS]; }; + Boom = derive2 { name="Boom"; version="0.9.11"; sha256="17kp3vla2z9kgcqgwcslcp0wl7k1k2rbc8nr3b785hv23gww11bi"; depends=[MASS]; }; BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.2.5"; sha256="1y1bn9490g3qvvjvxk8sc0312hmzwj0n5rg9fsa7k4av0yasv25w"; depends=[Boom]; }; BoostMLR = derive2 { name="BoostMLR"; version="1.0.3"; sha256="0gk8jf04qda1qsc6987d8nfa453v9cqkjsvvrrg68yx3fd96m8aj"; depends=[nlme Rcpp RcppArmadillo]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.70"; sha256="1bhdmbg3i7r9v563v84sh4kcl7r036h6aqrwjwr9r3r56l3834bb"; depends=[]; }; BootWPTOS = derive2 { name="BootWPTOS"; version="1.2.1"; sha256="1s6qvc2nvkqfxl8d4cy7ckvn6l0svq85g274pvjjxg8f883hax0j"; depends=[tseries wavethresh]; }; BootstrapQTL = derive2 { name="BootstrapQTL"; version="1.0.5"; sha256="04lyr9x6lz4q5y70p92ffdil2i9f1fsykw5wh6wsv0qcqypdmawy"; depends=[data_table foreach MatrixEQTL]; }; + Boov = derive2 { name="Boov"; version="1.0.0"; sha256="0vj57rlgabgs08sxi8vghkij22av99mbihrqw69d99xy8vjaf277"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen]; }; Boptbd = derive2 { name="Boptbd"; version="1.0.5"; sha256="1p786avc37yq5g01zh6sqx7b1rvbxrh6gbxsad4bdvr12cjdsss6"; depends=[igraph MASS Matrix]; }; - Boruta = derive2 { name="Boruta"; version="7.0.0"; sha256="0y2w4wb45kfnzrxcrdsiwgal9fsnlr3wad1sqdc70qv8gp921xbg"; depends=[ranger]; }; + Boruta = derive2 { name="Boruta"; version="8.0.0"; sha256="1irx7qg1sw69ggsk4jgxfd3pp741kd944fipnda1qbcbphg5prrq"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.3"; sha256="0dxvjdvzv2b3763x4wrkw02q57l42286w9bg2xhcngmcpdhnkg51"; depends=[Rcpp RcppArmadillo]; }; BoundEdgeworth = derive2 { name="BoundEdgeworth"; version="0.1.1"; sha256="1lj98v3h0hlv22s76gcf5bbyq2qnl692hagrprxjsyd79slc6gk1"; depends=[expint mathjaxr]; }; BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.0.3"; sha256="07vfaxgxnzj3dlv116x32bndzqmdbpc5szpjw73a9km8f2fkkb2k"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.2.0"; sha256="0a95jlbll4smi32z7ykf64cyrkscnb7shzj10i1p1hsf90dwi7sv"; depends=[glmnet MASS]; }; - BranchGLM = derive2 { name="BranchGLM"; version="1.3.2"; sha256="0isxc8r6i9iiklm9kwvk7lp9yp9kbz2s3jsk4d4l50z2vrkkw9qd"; depends=[BH Rcpp RcppArmadillo]; }; + BranchGLM = derive2 { name="BranchGLM"; version="2.0.0"; sha256="16f1q3jrg07kd89syjngg844m8x5r4fk0j01w8iisbi7pk17x20v"; depends=[BH Rcpp RcppArmadillo]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.2.0"; sha256="0pcr665j4balmcm4sq6l19nmhpbs7ayw5dljsdxr91bn6srb33b3"; depends=[dplyr readxl stringr]; }; BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; @@ -588,16 +590,16 @@ in with self; { Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; BwQuant = derive2 { name="BwQuant"; version="0.1.0"; sha256="0pna0ppj9hkxpc2mbyy0ss7zrl5y736h5xsfkhmqr0389vmgibrj"; depends=[KernSmooth nleqslv quantreg]; }; C19dNUTS = derive2 { name="C19dNUTS"; version="1.0.1"; sha256="09iclbkgaxz946nj4ppdzyr5ssipcip4nscxs10j0209frjgjhap"; depends=[]; }; - C443 = derive2 { name="C443"; version="3.2.3"; sha256="0zjnwkn17213x2zhflmmrplp6kr8zg04pfynpkwsgmf4rqyfyjvx"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; - C50 = derive2 { name="C50"; version="0.1.6"; sha256="1d4cy6xps17c97r5hipa2ar9hrw17iq1ld7afv5fd1v2cpic086c"; depends=[Cubist partykit]; }; + C443 = derive2 { name="C443"; version="3.3"; sha256="1ngk95m67aplpvcva02y3njwv4gcdh4yf0jgkdjzw6prg4h70jla"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr randomForest ranger RColorBrewer rpart]; }; + C50 = derive2 { name="C50"; version="0.1.7"; sha256="1q76bnnw79i7q7afxdh2pdampbacbkvscc5q8r78jailx5cr18dy"; depends=[Cubist partykit]; }; CA3variants = derive2 { name="CA3variants"; version="3.3.1"; sha256="0nc82xw341bv01knr2ksyifl0bkriwg4dfkw0fdkzh0b6dw2wfzr"; depends=[ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; CACIMAR = derive2 { name="CACIMAR"; version="1.0.0"; sha256="0fdi2ls0j10fky3jygqx93h8m1957cdbn1vxdi69bq08xf2c5n5h"; depends=[dplyr pbapply pheatmap psych reshape2 ROCR Seurat viridisLite]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; - CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; + CAISEr = derive2 { name="CAISEr"; version="1.0.17"; sha256="01gxxq9bfrrishzawmqh47byhc3szfss9bmcsh1p2gi9ml6aqcay"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; CALANGO = derive2 { name="CALANGO"; version="1.0.12"; sha256="1v5dkcakphyzlan4byrxp5kyhaysrpi6bzivx814hhkwx08wfm02"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; - CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; }; + CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-7"; sha256="1fspn6wgr0kc7j4ixx24c706kzrgjhi1b1w28izpfxm4r89zk08s"; depends=[mice mvtnorm randomForest]; }; CAMAN = derive2 { name="CAMAN"; version="0.75"; sha256="1r6bxqg9wrllznrm5n5a5kcskcj6cd9l5lm5hkyq1v2vb751z6i2"; depends=[mvtnorm sp]; }; CAMML = derive2 { name="CAMML"; version="0.2.3"; sha256="0qzp5hmsrq89jvizsvjrp1q01f9nc3fbn7ka964xp75f6pvckph6"; depends=[AnnotationDbi BiocManager edgeR MASS Matrix org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; @@ -608,11 +610,12 @@ in with self; { CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASCORE = derive2 { name="CASCORE"; version="0.1.1"; sha256="19v0cki0hdnw5nakakpahc5yz32ih379kagpv2aygzgq9mfwnfam"; depends=[igraph pracma reshape2]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; + CASMI = derive2 { name="CASMI"; version="1.0.0"; sha256="0nhjkvaa27l8j390sl220ckkjbgqj3dm8pnvw58fnprjhi9203sc"; depends=[entropy EntropyEstimation]; }; CAST = derive2 { name="CAST"; version="0.7.0"; sha256="0kvipagrf7qsp6wjmh1vjzdjpj9px9xn8a8b32h9cxq6fpxzd14j"; depends=[caret data_table FNN ggplot2 lattice plyr reshape zoo]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; - CAvariants = derive2 { name="CAvariants"; version="5.6"; sha256="1rv3r27m43q8z9hiac5fj3kx77j0sfmcgxwcl6mdfgx0jwq7pi3s"; depends=[ggforce ggplot2 ggrepel gridExtra plotly]; }; + CAvariants = derive2 { name="CAvariants"; version="5.7"; sha256="0jxz0db034fhiqbfbpzqakrmlibay9rzyxavprvans93k45zigfs"; depends=[ggforce ggplot2 ggrepel gridExtra plotly]; }; CB2 = derive2 { name="CB2"; version="1.3.4"; sha256="0431bd956hmkrhs9x845vjwbzzwzd7n9nfx9y95mv6qv84zd4wv2"; depends=[dplyr ggplot2 glue magrittr metap pheatmap R_utils Rcpp RcppArmadillo readr stringr tibble tidyr]; }; CBCgrps = derive2 { name="CBCgrps"; version="2.8.2"; sha256="0z34vcdq5lp1l15l3a67lpvfla0g0qsb5ijbc9h575h7fpf28jqf"; depends=[nortest]; }; CBPS = derive2 { name="CBPS"; version="0.23"; sha256="0bdkx7phi58200jgijqmv5d7v2kiksj07sxx2sjmkd1dcjdy13zd"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; @@ -620,7 +623,7 @@ in with self; { CBT = derive2 { name="CBT"; version="1.0"; sha256="13h6sf7w03nfq2arqymwww13ywnv9xnqbqazlzn856mj3ggaqda7"; depends=[]; }; CC = derive2 { name="CC"; version="1.0"; sha256="189si37ggichqmzy8m686zw1cijix7yfy8ma5iqpnq1q9vm3pcvy"; depends=[]; }; CCA = derive2 { name="CCA"; version="1.2.1"; sha256="1l4vp8yd42rpsm40szjfzhvbb5c7kl7yf4346i0940s6gk7bzzi8"; depends=[fda fields]; }; - CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.1"; sha256="0jfk1ii6001xp2j13dwhb58dy1b7bq5rhmy9fdfyr3ss4kqdnqaq"; depends=[dplyr geosphere magrittr raster sf sp terra]; }; + CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.2"; sha256="1spjf6rjqqn90c9acdb0z7ysdkzia9fgnwbp4n0cycd3wc7pngf0"; depends=[dplyr geosphere magrittr raster sf sp stars terra]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; CCP = derive2 { name="CCP"; version="1.2"; sha256="067nf1gag3ya7v9vzcpvallga5dr243q0q07fd370k0zynmhcfby"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; @@ -628,11 +631,11 @@ in with self; { CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; CDM = derive2 { name="CDM"; version="8.2-6"; sha256="1lcq3i5rlyqkc12c26kj0x4fm2gh1jsisp6kbf59y3hjdkiqajhl"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; - CDMConnector = derive2 { name="CDMConnector"; version="0.1.0"; sha256="0872k9a2xm6y55qb17hjjsh7kygx0grfkf064i1f9cvmdyw9mw7a"; depends=[arrow checkmate cli DBI dbplyr dplyr glue magrittr pillar purrr readr rlang tidyselect waldo]; }; + CDMConnector = derive2 { name="CDMConnector"; version="0.3.1"; sha256="15nlx4db6pix17l657pacadvbgfll6ky3bczayyjd6jraww32k9q"; depends=[arrow checkmate cli DBI dbplyr dplyr glue jsonlite lifecycle magrittr pillar pkgfilecache purrr readr rlang SqlRender tibble tidyselect waldo withr]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; - CDatanet = derive2 { name="CDatanet"; version="2.0.1"; sha256="0slw0lz0k6706hww7msfkal1nwq1252cnxswpi9b9yjm9qnmj1hs"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; + CDatanet = derive2 { name="CDatanet"; version="2.0.3"; sha256="0736j23qnds21qsblwh08dj4ylcs70bpqw5pr0hxmnilkk6jgyj2"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; CEDA = derive2 { name="CEDA"; version="1.1.0"; sha256="1m03l552zql3cqra1r1zdjcw6abpfdhvn3dkbhdhmnmg59fb6bfb"; depends=[dplyr ggplot2 ggprism ggridges ggsci limma mixtools]; }; CEDARS = derive2 { name="CEDARS"; version="1.90"; sha256="1fngyc08kvilfd2d75gjg0s6c5zvjywym35sk568yzxnsz89b7yy"; depends=[fastmatch jsonlite mongolite readr shiny udpipe]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; @@ -641,12 +644,12 @@ in with self; { CERFIT = derive2 { name="CERFIT"; version="0.1.0"; sha256="1mhyn5iyvnqqx881jfvacyxaldvn5q9h1jpsfy14sgkdjf75274s"; depends=[CBPS glmnet partykit randomForest Rcpp RcppArmadillo twang]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; - CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; CFF = derive2 { name="CFF"; version="1.0"; sha256="04z3q0s4b1yns5l7lplw8qrcdjzsdy9crnhakyzd6r449hjfsvnz"; depends=[]; }; CFilt = derive2 { name="CFilt"; version="0.2.1"; sha256="1iah41s0pd8s4vmg7r6npsgmfr6mvyp5wfnyimx51fqr2f3narwf"; depends=[]; }; CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.3"; sha256="1g70hjpc33dnr6yw42kjhy9ngba05qzk5mr7md6pqhmbx0ykhr6g"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3"; sha256="1wmp5im18s447rjkj891skrm7558xkqlbx43n9hyxiqg49zq1ng9"; depends=[]; }; + CGNM = derive2 { name="CGNM"; version="0.5.1"; sha256="0li1cg0hxj5i9dxl2s06rwnssiyd2af90g34knmhlpn3f2pzb690"; depends=[ggplot2 MASS]; }; CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.3"; sha256="12l3ww9wfrk8i0a63wv5h4ayqj6fj5fz5yvkiskvaaida32vds2m"; depends=[BayesFactor DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; @@ -660,7 +663,6 @@ in with self; { CICA = derive2 { name="CICA"; version="0.1.0"; sha256="0f765c1sqvcg11071008vn6gnk0v0lwmlhnqxgqy0r8cw05s2ggq"; depends=[ica NMFN]; }; CIDER = derive2 { name="CIDER"; version="0.99.1"; sha256="0ag2gyrjjyq4r4xssmz05cg1sh8mmq54d5mynhwm5k53zcpk8i8r"; depends=[dbscan doParallel edgeR foreach ggplot2 igraph kernlab limma pheatmap Seurat viridis]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; - CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; CIMTx = derive2 { name="CIMTx"; version="1.2.0"; sha256="1jx99vh620zqwp7p4bjcxa3n0kg6w6q88kklv9f9x44894mrd56a"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; CINE = derive2 { name="CINE"; version="0.1.3"; sha256="0y5xadsvmciv9cqx6sa8qs1ss7zm55l3304gzdaadmqbsnsq75j8"; depends=[dplyr tidyr tidytext tm]; }; @@ -701,12 +703,12 @@ in with self; { COINr = derive2 { name="COINr"; version="1.1.0"; sha256="0vi89kfma2r8wkfxrfi8hb5m6pvhqbl5ja3kzqriwv4qpzg8syyg"; depends=[ggplot2 openxlsx readxl rlang]; }; COLP = derive2 { name="COLP"; version="1.0.0"; sha256="0259s058rn7fyprma5frx7sdjv4qk9hxijpi9xh7qyz5jzzsi660"; depends=[combinat MASS]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; - COMIX = derive2 { name="COMIX"; version="0.1.6"; sha256="0x3x09jvplap1wgg4y80gymxzh9mac8np7wmqldhjnmkqs9bwc42"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; - COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.7.0"; sha256="144vf3vfn5msc8p67q65frza8xyi9nqccjq47fnv33w5h0d9wlxj"; depends=[Rcpp]; }; + COMIX = derive2 { name="COMIX"; version="1.0.0"; sha256="0dhc3zb8jkfq8b9vj8m2a9jbd9fc7xxvhz16l8xhz9v5iffgk6hh"; depends=[coda dplyr ggplot2 Rcpp RcppArmadillo RcppEigen RcppNumerical rlang stringr tidyr]; }; + COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.8.0"; sha256="0yaq7mfqcdyp077xhmqd3rx0b77y2rg1yz89q4llgiwfg244y6mp"; depends=[numDeriv Rcpp]; }; CONCUR = derive2 { name="CONCUR"; version="1.4"; sha256="0455jmc8grcpmipcz2rr6zdhxjfi0gd5zj46lyvh75k6wn2p6265"; depends=[CompQuadForm dplyr mgcv]; }; COR = derive2 { name="COR"; version="0.0.1"; sha256="0flir1mwqqs418hwcwdg72a1r89hamf6zd8jaf8g7hm4lp3i1cgf"; depends=[]; }; CORE = derive2 { name="CORE"; version="3.2"; sha256="10y404xkd4pqlh9w5hcx6laxpqy0831v61nacih094m0q6af9brl"; depends=[]; }; - CORElearn = derive2 { name="CORElearn"; version="1.56.0"; sha256="0zdx9ljxjzkj4kbrv856l3jaiv2s7dqycr3b3x7k5g05iv1ic6lv"; depends=[cluster nnet plotrix rpart_plot]; }; + CORElearn = derive2 { name="CORElearn"; version="1.57.3"; sha256="1kgnjl8g2njrc4xnsvz76mjzp2z93klps6k1msni1fsjbg0vvl05"; depends=[cluster nnet plotrix rpart_plot]; }; COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COVID19 = derive2 { name="COVID19"; version="3.0.2"; sha256="0ljhvip944gv44b5nswcp59n0qjsyniynq2wiwcb03lv6pvvmz1x"; depends=[data_table R_utils]; }; @@ -714,8 +716,8 @@ in with self; { CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; - CPC = derive2 { name="CPC"; version="2.2.1"; sha256="0nb5ghcrzjncqwpk0x7k4l4mkhrra46dqbbk5clpld56r7j4cn0b"; depends=[cluster dbscan Rfast]; }; - CPGLIB = derive2 { name="CPGLIB"; version="1.1.0"; sha256="01klcg6ik7f9p2cy8m0j8qrmy4rah49pv2fyhqvqfbcxibmjbgxy"; depends=[Rcpp RcppArmadillo]; }; + CPC = derive2 { name="CPC"; version="2.3.0"; sha256="1lh6g2d2xk41nnafcx2qvcigb957ccwq19vp1fcmxq8gmzcg3yr4"; depends=[cluster dbscan Rfast]; }; + CPGLIB = derive2 { name="CPGLIB"; version="1.1.1"; sha256="10pv9f36cg4ahgcbl3agc6zvgh3bmv78rc2vl6xhm1jpijhxqk93"; depends=[Rcpp RcppArmadillo]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; CPNCoverageAnalysis = derive2 { name="CPNCoverageAnalysis"; version="1.1.0"; sha256="0w4yw6d41sgl1ypcmp3bxgz4p3cpnbqx73id17zklid4avr3y9yi"; depends=[]; }; CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; @@ -728,20 +730,21 @@ in with self; { CREDS = derive2 { name="CREDS"; version="0.1.0"; sha256="1llgxsmpk13gq75y2r3qiwwjcl87bknkryaw5dq0ndf17rj31mw8"; depends=[MASS]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; CRM = derive2 { name="CRM"; version="1.2.4"; sha256="0jv2z1y3zyj1m86p4pmqww58hj8pvid1ss6ym67y46n9srzxsmj5"; depends=[]; }; + CRMetrics = derive2 { name="CRMetrics"; version="0.2.2"; sha256="0q0d0g1iblwgm21kdrcj06ish9aif223rj9ykh0j9lvafgigc77f"; depends=[cowplot dplyr ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel magrittr Matrix R6 scales sccore sparseMatrixStats tibble tidyr]; }; CRTConjoint = derive2 { name="CRTConjoint"; version="0.1.0"; sha256="1lp3rxjd8pilin6kvl49vm11bjd6dzhalmwf99j3jsiiavxc6baq"; depends=[doSNOW foreach Rcpp snow]; }; CRTSize = derive2 { name="CRTSize"; version="1.1"; sha256="1hwvfzbicz8p452k3qyschpn7q8drnhbln6ny6nx4ncgrdr8lsd0"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0.1"; sha256="0sqsgs8qbc6gvzr3l2r8y83nbhz12q3jf2cjlb2xgif15r7sbnxx"; depends=[ggplot2 MASS Matrix]; }; CRWRM = derive2 { name="CRWRM"; version="0.0.1"; sha256="0w6lg5q2c0w5p9vg5qr32pycyl8d1zp0s55jlvf2xhmqx34677hd"; depends=[]; }; CSCDRNA = derive2 { name="CSCDRNA"; version="1.0.3"; sha256="0ym6bzk8n9kf0pvd3h4dv2hhxmmrr54hvs7vccmxrhxikr8ix5iy"; depends=[Biobase BisqueRNA limSolve MAST nlshrink plyr Seurat]; }; - CSCNet = derive2 { name="CSCNet"; version="0.1.1"; sha256="02kv2d0xjmkmzzys04r8jczc51kdrm77rk48q6j3cl73zpcv3z99"; depends=[caret dplyr furrr future glmnet magrittr prodlim purrr recipes riskRegression stringr survival tibble tidyverse]; }; + CSCNet = derive2 { name="CSCNet"; version="0.1.2"; sha256="0amsrjzpfga66mh6x589whz70xpl0sg10f80x87apxz312rb4r8m"; depends=[caret dplyr furrr future glmnet magrittr prodlim purrr recipes riskRegression stringr survival tibble tidyverse]; }; CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; }; - CSHShydRology = derive2 { name="CSHShydRology"; version="1.2.10"; sha256="1h3lcixsq19si1lbzzm8h9h0k4p01z2s8zzdw5az4vlsbg7wv1gl"; depends=[dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr plotrix raster sf stringr tidyhydat timeDate whitebox]; }; + CSHShydRology = derive2 { name="CSHShydRology"; version="1.3.0"; sha256="0jmc0d3lpnjf0srh3s3zy2d941xah4y7sq1zkw21a6gmxd82a3ww"; depends=[circular dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr plotrix raster sf stringr tidyhydat timeDate whitebox]; }; CSIndicators = derive2 { name="CSIndicators"; version="0.0.2"; sha256="12kbc289a3q1zjg19wcwng29hrjy76jmj3fd8c9064lj0xns5jjh"; depends=[ClimProjDiags multiApply s2dv]; }; CSMES = derive2 { name="CSMES"; version="1.0.0"; sha256="1ddr2b39d7nwan6dqf5xx9h6gzfxxk50r1d9vbpb9hc8a7d15vnp"; depends=[caTools data_table mco ROCR rpart zoo]; }; CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; - CSTools = derive2 { name="CSTools"; version="4.1.0"; sha256="0r7bbaaapk5f32b6qwmmanddk1gqs7vq6461vf29pi7qsr2jlq9y"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv verification]; }; + CSTools = derive2 { name="CSTools"; version="4.1.1"; sha256="1a05wv9isrlf7pzhychczvnpvsppnnriaz4jsm78ccg0m9y3wabj"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv verification]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTAShiny = derive2 { name="CTAShiny"; version="0.1.0"; sha256="18qw8nx1r4gwlxj9zxn4hllpn29fv3i4fgwyl5fh3qsv9hmbvi0x"; depends=[epitools rpivotTable shiny shinyMatrix]; }; @@ -762,7 +765,7 @@ in with self; { CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; CVST = derive2 { name="CVST"; version="0.2-3"; sha256="0bgk0d6w3dyhb5s30idnp6jpb3m8wf3b79wqlg127wwm0cird8pg"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.2"; sha256="14fgm5kzp1sscklv2pra800p12ga2hlqmm8s6zs5hdhlyvf0kj6v"; depends=[EbayesThresh wavethresh]; }; - CVXR = derive2 { name="CVXR"; version="1.0-10"; sha256="0cklfwsr3p4x4w7n6y3h3m4i3si8q0pwyp2vzv7kzawrmqc80484"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; + CVXR = derive2 { name="CVXR"; version="1.0-11"; sha256="0alp1g4bszxqcrjbn54bz1zswg8y10372fwwlbi0jjazycw9cap9"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CVrisk = derive2 { name="CVrisk"; version="1.1.0"; sha256="0xnpnjncdal2akdnkb52s7r82p2di0rc48h6nswbclkl5xf3snd6"; depends=[]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; @@ -780,8 +783,8 @@ in with self; { Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; Carlson = derive2 { name="Carlson"; version="1.1.0"; sha256="1ygsv2zdlm4yg35lqryb6hdn6wjm5yf1wdqbpd3vzmcag9m29nzq"; depends=[]; }; - Cascade = derive2 { name="Cascade"; version="2.0"; sha256="0zd9krlklmsy03kya5bdx2hj25fvfhwcx431q618ccw44c11b590"; depends=[abind animation cluster igraph lars lattice limma magic nnls survival tnet VGAM]; }; - CascadeData = derive2 { name="CascadeData"; version="1.3"; sha256="0vmr9gfmgrgan9q5hsavqfdd76dpm19a53m9s8jkj14rsd47bpll"; depends=[]; }; + Cascade = derive2 { name="Cascade"; version="2.1"; sha256="1hfbv9129rnrjqspjd8wnhw0qrp1m142bixlwddzr6j2sg7r8s20"; depends=[abind animation cluster igraph lars lattice limma magic nnls survival tnet VGAM]; }; + CascadeData = derive2 { name="CascadeData"; version="1.4"; sha256="0cbnp8mqv3alsz7b5fa8djg1yd46zkn1f3b0pqww2yn8zavd4fih"; depends=[]; }; CatDataAnalysis = derive2 { name="CatDataAnalysis"; version="0.1-5"; sha256="19bbilvz9h2bswpm5992c48cm4slc73kf0ny2mp78vhcfadri9cb"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-1"; sha256="0gkaxs7apqhq7mp3chjsyhrnk3qkk11f8p7smmyj6h73888ry8jn"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; @@ -792,10 +795,10 @@ in with self; { CausCor = derive2 { name="CausCor"; version="0.1.2"; sha256="1m41i4knqh4hddz3s3p62qhx2dmdypm8gfdwlczlja89llx9737b"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; CausalGPS = derive2 { name="CausalGPS"; version="0.2.8"; sha256="1frzxmnqfskvlpxy7byy96i1yw88h9vjxc54fhn523d4676k6bmj"; depends=[data_table earth gam ggplot2 gnm KernSmooth logger MASS polycor ranger Rcpp rlang SuperLearner tidyr wCorr xgboost]; }; - CausalImpact = derive2 { name="CausalImpact"; version="1.2.7"; sha256="1sbi58zs39cxyq4h8d9h9w2s2qbnj5jkpc68cibwxlzkyllaks52"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; + CausalImpact = derive2 { name="CausalImpact"; version="1.3.0"; sha256="0h3sh35962vdph72svfdvk6b1gl7wnj2kfkkpcjldbiszlfxp7wx"; depends=[assertthat Boom bsts ggplot2 zoo]; }; CausalKinetiX = derive2 { name="CausalKinetiX"; version="0.2.1"; sha256="0haxw4vvbw48hlvsl1d1y3xm48qm5vl0d3k5lj89ajwc618nk5jg"; depends=[cvTools deSolve fda glmnet pspline quadprog randomForest sundialr]; }; CausalMBSTS = derive2 { name="CausalMBSTS"; version="0.1.1"; sha256="1mjw2zyddkci6vkbyz3d94l5z1aj3rc2w6lag5igbfv4q0n5qcrp"; depends=[CholWishart forecast KFAS MASS Matrix MixMatrix]; }; - CausalModels = derive2 { name="CausalModels"; version="0.1.0"; sha256="0njvszf6b161lq8g94aawwb9pwbf0gdb2by8g8n6s67vbl7lyq0w"; depends=[boot causaldata multcomp]; }; + CausalModels = derive2 { name="CausalModels"; version="0.2.0"; sha256="19m1qfzssrwmsxiiyqiqby102qmxxcmbyxhggd9bb44z2iicf8cl"; depends=[boot causaldata geepack multcomp]; }; CausalQueries = derive2 { name="CausalQueries"; version="0.1.0"; sha256="1m7i5v4im85lzn9agf9nlf458y76k21h59avg4924bm4hn709lls"; depends=[BH dagitty dirmult dplyr ggdag ggplot2 latex2exp lifecycle Rcpp RcppEigen repr rlang rstan rstantools StanHeaders stringr]; }; CautiousLearning = derive2 { name="CautiousLearning"; version="1.0.1"; sha256="1m5x93l4bscrpcxk0pva6d6n2qnzhzxh0a6a81p97l8lqgs1qw2q"; depends=[BH Rcpp sitmo spc]; }; CePa = derive2 { name="CePa"; version="0.8.0"; sha256="1wjm6nyjaz3z0g2dxk1k82va86qxx2xsgx02y9ipyzf1ldxclm1s"; depends=[graph igraph Rgraphviz]; }; @@ -809,14 +812,14 @@ in with self; { ChainLadder = derive2 { name="ChainLadder"; version="0.2.16"; sha256="04ch0aimxc81i1isv6clpwx0bsbrpq5ncjww9dapa4v5rgxc4n2q"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.1"; sha256="0gasqf39hhrd2pg2rq4a2aaxwi3syjvmgdiss42wdwb47dww8wil"; depends=[]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.5"; sha256="09qdj93al6r7pg9s2xvwks7d73bgjsn1k7h8rcdzf245r89l8726"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.6"; sha256="174mv7b9jfw240i29b457994iza3wwqx0mjxbpl28af0fba1h4xl"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.3"; sha256="0n9g8wwvc8p5clypl7z23w8fs6d0c47bblijwd4pjwy26bcb4m8h"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; Chaos01 = derive2 { name="Chaos01"; version="1.2.1"; sha256="1wk70l1y0yzbjcjp0r334l1q3hzki0vzn6wbza97mq9pz8wp050r"; depends=[]; }; - ChaosGame = derive2 { name="ChaosGame"; version="1.3"; sha256="0xayap1gs36p9cvlyf5s562vy5pahqcwlwnr355i34zw616yg76l"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl]; }; + ChaosGame = derive2 { name="ChaosGame"; version="1.4"; sha256="06d2jm8b3l242yqgbfsr1cclph0l8xdxqfq7xvbghsavzk3lf367"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl]; }; CheckDigit = derive2 { name="CheckDigit"; version="1.0.0"; sha256="19apm7hr1k693w2ybv7vmaw5mxnhdjggpnr4m8phyvv8by345rxs"; depends=[]; }; ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.4"; sha256="0dnpwfx1p3p8qfxxiz1r6hipdpklhyz88sd2mq2ap24pn7xqdhf1"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.5.0"; sha256="05k46fn2i0ipn14zignxvykr8018wxql26x2r5b479hbkg1rk5s4"; depends=[ChemoSpecUtils colorspace ggplot2 readJDX]; }; - ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.0"; sha256="15w9v4g7myw0ygd9dvalz900yzgz5j2jnmw4j3zfp04fgm3wgbfq"; depends=[ggplot2 ggrepel magrittr plotly plyr]; }; + ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.2"; sha256="0px9aqkkpkhcnjjan22cr43d1qrgrkb2fgdam5cpmv1cfygckwvj"; depends=[data_table ggplot2 ggrepel magrittr plotly]; }; ChillModels = derive2 { name="ChillModels"; version="1.0.2"; sha256="06hgg893anh5z8an4l1xl4liz7d0m79n21h116vkdlymayccydbr"; depends=[]; }; ChineseNames = derive2 { name="ChineseNames"; version="1.1.1"; sha256="1vkf4573iq7fqxwig7sphsbfpa9jbx36dayywdjx3n8nx8lksdqa"; depends=[bruceR data_table]; }; ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; @@ -844,17 +847,17 @@ in with self; { ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; ClimMobTools = derive2 { name="ClimMobTools"; version="0.5"; sha256="14ysx7q92hgmkrwgnkdb3h38jz1zjsadzm8zwma63hhrrcmig2j1"; depends=[httr jsonlite Matrix RSpectra]; }; - ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.3"; sha256="1grhg0ajf5lfm7pi5mm0hgp0cmln1jwrgkrfb4ci85fpqn96ddji"; depends=[climdex_pcic multiApply PCICt plyr]; }; + ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.2.1"; sha256="1xb2vhv6haql1xqx9ic9hikshfi47lxv874mfwv1jll4fq95saia"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; ClinicalUtilityRecal = derive2 { name="ClinicalUtilityRecal"; version="0.1.0"; sha256="17xj9cmdkjrzx7mshka2hlkxh8887sprdqix7fd8jcr9bmc6ad9r"; depends=[caret cowplot ggplot2 lattice nloptr]; }; - CliquePercolation = derive2 { name="CliquePercolation"; version="0.3.0"; sha256="0wd8pbi0p19vyhnf6yjwhfzc4s95hhpp26hy97jwx9bg8ahcd4hj"; depends=[colorspace igraph magrittr Matrix pbapply Polychrome qgraph]; }; + CliquePercolation = derive2 { name="CliquePercolation"; version="0.4.0"; sha256="17m8pj8wg2ngzip1ag3jm5fqi083ilrsi0rvpcg5jmqflwlka8h3"; depends=[colorspace igraph lessR magrittr Matrix ohenery pbapply Polychrome qgraph]; }; CloneSeeker = derive2 { name="CloneSeeker"; version="1.0.11"; sha256="19aj4c2q3wp4vp08j72700wwyqmkqxwml2fwmz0wsxdam8vp1ydi"; depends=[combinat mc2d quantmod]; }; CluMP = derive2 { name="CluMP"; version="0.8.1"; sha256="1vpxl2rcknqx32b94b48iirkh7r7cdri9mcljrw29gsbvhrfc46k"; depends=[amap data_table dplyr ggplot2 MASS NbClust rlang tableone]; }; ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; }; ClusBoot = derive2 { name="ClusBoot"; version="1.0"; sha256="1wh9mv932zarl8w098lgv2jpanp6r8nzdkyayv8nxk7nddl0bn1k"; depends=[]; }; ClusPred = derive2 { name="ClusPred"; version="1.1.0"; sha256="12pm5vkfxpaincv9ajid0p07l0mjc2kfqqfg0ls2pcxmmkh8wwb4"; depends=[ald ALDqr quantreg Rcpp RcppArmadillo VGAM]; }; - ClusROC = derive2 { name="ClusROC"; version="1.0.1"; sha256="0nndzm5ap5fmvgc74kcx1h3jv4wpjg9rr4vj1lvxz8zyw3kacfrh"; depends=[car doSNOW foreach ggplot2 ggpubr nlme numDeriv rgl snow]; }; + ClusROC = derive2 { name="ClusROC"; version="1.0.2"; sha256="055ppcnzwkapnyf9xvld4bvkccwf494gqcb2qq0vnsa8n6bz5k46"; depends=[doParallel ellipse foreach ggplot2 ggpubr iterators nlme numDeriv Rcpp RcppArmadillo rgl]; }; ClusTorus = derive2 { name="ClusTorus"; version="0.2.2"; sha256="052jq96xr9qrc203ib11qsni50j0jzdpfwmbnd5rypfvff6w5kxc"; depends=[BAMBI cowplot ggplot2 igraph purrr rlang]; }; ClusVis = derive2 { name="ClusVis"; version="1.2.0"; sha256="06yckdl3gxjia1gjjqpc29lvy4f7qf47fncslng9ggjnks6il145"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; }; @@ -867,7 +870,7 @@ in with self; { ClustVarLV = derive2 { name="ClustVarLV"; version="2.1.1"; sha256="0maylgf6czlll5zn3xj68acmllxi4x2r4ri6bdx8vl9apzax1rgy"; depends=[doParallel foreach iterators plyr Rcpp RcppEigen]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.3"; sha256="10i7mnaq968my1c5hi8bdsj05m64wlmrf4n4m118is5h1q7zss8r"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.1.2"; sha256="1ha50yzc2arlz4c2g7r9w891fk775xfbhz0gky3zxawlsa02213s"; depends=[dplyr magrittr]; }; - ClusterR = derive2 { name="ClusterR"; version="1.2.7"; sha256="1sl218scrf5s02v54bmmk2sz1vrnlq16c14c0lcg1n7x8d76sgk6"; depends=[ggplot2 gmp gtools lifecycle Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.2.8"; sha256="04p0bjqi18b6qvvximad5yf5v5zalhjbl9j3m405g942kp0a48xh"; depends=[ggplot2 gmp gtools lifecycle Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; @@ -880,7 +883,7 @@ in with self; { CoOL = derive2 { name="CoOL"; version="1.1.2"; sha256="18z7s8bvnym4xj0hh5m6bwm86ddmsgivqv4g5zbd9m87l7khl9pn"; depends=[ClustGeo data_table ggplot2 mltools plyr pROC Rcpp RcppArmadillo wesanderson]; }; CoRpower = derive2 { name="CoRpower"; version="1.0.4"; sha256="08chsbbl74rskinp68pwzpvnxx5lkfqf71j7ryp1cwy7199h3jyw"; depends=[osDesign survival]; }; CoSMoS = derive2 { name="CoSMoS"; version="2.1.0"; sha256="149mybfxaqssawp8fqhjiv3xljzflc02y4pfvavz7rklfplidqkb"; depends=[animation cowplot data_table directlabels ggplot2 ggquiver mAr Matrix matrixcalc MBA mvtnorm nloptr plot3D pracma]; }; - CoTiMA = derive2 { name="CoTiMA"; version="0.5.4"; sha256="02bg0bckg5h8bk4plxjni5kya9rmqhz5d9dvfa19hmyd384hdxhv"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; + CoTiMA = derive2 { name="CoTiMA"; version="0.6.2"; sha256="0394a6m1hg9klcgpk4s51rql8k2084cbs6bzpgrsbk3gnvcxy8s3"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; CohensdpLibrary = derive2 { name="CohensdpLibrary"; version="0.5.8"; sha256="1kvg5wgzgscwqm9hbng92alka2jrar7yfx3s707gj11ck5ldhhmf"; depends=[Rdpack]; }; @@ -905,12 +908,11 @@ in with self; { Compack = derive2 { name="Compack"; version="0.1.0"; sha256="1bl1drbkak7r7scfiij6sf8fjzq01y3p05mjlkknhi9k1l6jq0mi"; depends=[fda MASS orthogonalsplinebasis plyr Rcpp RcppArmadillo]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.6.2"; sha256="0r8gdr834jqqwiq9h4yz19gcg92rbdd4fr3fwi083vfjml82f0v0"; depends=[data_table expm Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; - ComparisonCR = derive2 { name="ComparisonCR"; version="1.0.4"; sha256="10xw3ppkzpc3njc409ln7g6bg33csf2ilw3f11hn60ry5xbnn82y"; depends=[boot CIFsmry cmprsk]; }; ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.1.1"; sha256="0lidakxb1ab6bpb7sf2arjl1xpym1lzxbh63g0x4c2dm7h0kzkwi"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.6"; sha256="17gqjqpnq7925gx9p2q068zcrdjkkjjmm9zgn2rmpmgzsp7ww3j6"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; }; - Compositional = derive2 { name="Compositional"; version="5.9"; sha256="1w5ybdsbshlxd82zks2jiwbc2jnn5fjcj0pmdffq6n0z36myxgzd"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; - CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; + Compositional = derive2 { name="Compositional"; version="6.0"; sha256="0f17yj4zr69g70kayp0r25j6z2nqmhh06byp4vks8xiphah3jx4w"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; + CompoundEvents = derive2 { name="CompoundEvents"; version="0.2.0"; sha256="0dlkkr26f07g0q3kcg0byvvlnf2hd5i8h9p1mkba333wh6af21ic"; depends=[]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; ConNEcT = derive2 { name="ConNEcT"; version="0.7.27"; sha256="1j66qmvgm9yrgnrcg600s25haq9imcshmy6fv9vd84mhy21md85h"; depends=[qgraph]; }; ConR = derive2 { name="ConR"; version="1.3.0"; sha256="1q93x2b7a2jgkybazk24x8gvwvjjvkhi1gy5zx1sc2f4arm73myq"; depends=[doSNOW fields foreach geosphere raster rgdal rgeos rnaturalearth sf snow sp tibble writexl]; }; @@ -950,7 +952,7 @@ in with self; { CopulaCenR = derive2 { name="CopulaCenR"; version="1.2.1"; sha256="0dkjdzd720wnmfashvg3q0hl0dw9w99m972jwrjrzh24498rlq1m"; depends=[caret copula corpcor flexsurv icenReg magrittr plotly pracma survival]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5.1"; sha256="027007xrzd2m7pgv8ki901aaf2957ih1lqh881viyd8hbfcfaghy"; depends=[matlab mc2d statmod tensor]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; - CorMID = derive2 { name="CorMID"; version="0.1.6"; sha256="0grwaaj06clg27lssa9zhlv2siyrraxjc4sy5nj6mffncs10d52c"; depends=[plyr Rdisop]; }; + CorMID = derive2 { name="CorMID"; version="0.1.7"; sha256="1i51zn8m2lpdv3dqq4cqyvyzqv9wf1flw7g83j8dj8r6nlasfva5"; depends=[plyr Rdisop]; }; Corbi = derive2 { name="Corbi"; version="0.6-2"; sha256="13lbh6fcfrpgz459mjdnfkd8kys2350s8j0vv9ps18092264gh42"; depends=[CRF igraph MASS Matrix]; }; CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.2"; sha256="04dvryhcyi7f6bmm4067cn5vmy7kdqi3bys7ln8nnsc0kkdjxhi5"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CorrBin = derive2 { name="CorrBin"; version="1.6"; sha256="0iwad5qf7hqii02s5f85155c5s7v8ghnac4l6l3c45dshrpapp2m"; depends=[boot combinat dirmult geepack mvtnorm]; }; @@ -962,7 +964,7 @@ in with self; { CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; }; Counterfactual = derive2 { name="Counterfactual"; version="1.2"; sha256="1spryxvnkdz728rl4nb7zlqhynnh0b4m7lnhq4i1n13gfsz1m5j4"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; }; Counternull = derive2 { name="Counternull"; version="0.1.0"; sha256="1vnjhqif8ydnp6fb225hml1d2sincscs4q1vacbzxah628ac9yhp"; depends=[effsize]; }; - Countr = derive2 { name="Countr"; version="3.5.5"; sha256="0w2bdcr84zjcgcn2vrx2nib7dxq8vm12di3ni57z4yx4syskg3ik"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; + Countr = derive2 { name="Countr"; version="3.5.6"; sha256="0zmg0hy9h2rjj3a6h05q8xxg0q2q65agmpm0gxk0qjl97wrh1fcy"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; }; CovCombR = derive2 { name="CovCombR"; version="1.0"; sha256="07yd0zbvc9db2jw6xigfhxnbkxwb3gxlmywadz7fs3rva2if2ffx"; depends=[CholWishart Matrix nlme]; }; CovRegRF = derive2 { name="CovRegRF"; version="1.0.1"; sha256="0fldvdjxysg6r7p6vxnnfjih68j8igxva57fs5rygxmi51l2vl6n"; depends=[data_table data_tree DiagrammeR]; }; @@ -979,15 +981,15 @@ in with self; { Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; }; Cronbach = derive2 { name="Cronbach"; version="0.1"; sha256="1gkapi7pgf1mwidhgdf3y5cm4bz5igzb7mdflz560aa67asp1qyf"; depends=[boot]; }; CropDetectR = derive2 { name="CropDetectR"; version="0.0.1"; sha256="14sabqld94if7f2m39bh6652cb62hcwx53k8q5k23anzzsn93qlj"; depends=[dplyr EBImage imager reshape2]; }; - CropScapeR = derive2 { name="CropScapeR"; version="1.1.4"; sha256="0rs428sz2fd4ysz1k5i2zkjg4vga2rczlbdd042sdjq501nk2462"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; }; CrossVA = derive2 { name="CrossVA"; version="1.0.0"; sha256="16ahw8h27acvqqixmwmsyl6rbjzxbn4pfyh2ls9rq852mc7mdg9b"; depends=[stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.4"; sha256="1q5wnw2llvlw3hbjg0zccipk3ns31m2339x1aj6m526zhvgl2wvx"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-20"; sha256="1mm8zc845v077rnhijammpq72dsm9smwiixr0iygcadb5vbkfpib"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; + Crosstabs_Loglinear = derive2 { name="Crosstabs.Loglinear"; version="0.1.1"; sha256="0238652k1mv396wjxm058xvhp7rss0nkmn48bvkhq6pcryna2lzb"; depends=[]; }; CruzPlot = derive2 { name="CruzPlot"; version="1.4.8"; sha256="19dza13mdd67g7710bzzg1bi32nhgr3c5vcyh98igw3q8hfk7ac8"; depends=[dplyr DT geosphere mapdata maps marmap shiny shinydashboard shinyjs stringr swfscDAS]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.7"; sha256="0skk0mgnkfknlbdidfh2jca1wa8rzgd29ypwpa8kdh83l9jhdi5g"; depends=[gmp kSamples LambertW Rmpfr sfsmisc tseries]; }; CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-3"; sha256="1c7n020i9lxp0fam05k9v4az4rvx8fakhzi9fkma82smpl709x8q"; depends=[car chopsticks ellipse rJPSGCS]; }; CsChange = derive2 { name="CsChange"; version="0.1.6"; sha256="0ahgzir1rz5hh2jkgabp9vccg527vbvmkdyxf9lyz5yxkig3jv2s"; depends=[boot Hmisc rms survival]; }; - Cubist = derive2 { name="Cubist"; version="0.4.0"; sha256="0y2mjqg8285vprm42z1dsqhs5k6g3703ysg3225a7qq08ga787rs"; depends=[lattice reshape2]; }; + Cubist = derive2 { name="Cubist"; version="0.4.1"; sha256="0ab1zdc1ddc6x7j2y53ccvqwaap6v26i447hn8lwlnz6i7c3idlz"; depends=[lattice reshape2]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; @@ -1012,6 +1014,7 @@ in with self; { DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; DATAstudio = derive2 { name="DATAstudio"; version="1.1"; sha256="1gwm53pgab5qn0p46bxs0790n7bbfl7b66i84xsa6bb4zdw5jdzb"; depends=[data_table ggplot2 scales]; }; DArand = derive2 { name="DArand"; version="0.0.1.2"; sha256="1pwd5srrjy8mhs40k6g6x5j3vk9cr5hylk8sdyiiqalpq490nzqy"; depends=[]; }; + DBERlibR = derive2 { name="DBERlibR"; version="0.1.3"; sha256="19hqp0q7j6b7h9bamn3v2d1kdwzi0mlqvx7b618fkixpibqndzn7"; depends=[car dplyr emmeans ggplot2 ggpubr ggrepel psych readr reshape rstatix tibble]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBI = derive2 { name="DBI"; version="1.1.3"; sha256="13a2656w5j9shpcwa7gj2szy7nk9sajjhlisi5wdpgd57msk7frq"; depends=[]; }; DBIsqldf = derive2 { name="DBIsqldf"; version="0.9.9-2"; sha256="1yp9xqrf6dbq9478w0bd55rzhqf78anwrqzlkphbl7fk2d2ipy6i"; depends=[DBI]; }; @@ -1027,7 +1030,7 @@ in with self; { DCEtool = derive2 { name="DCEtool"; version="1.0.0"; sha256="0l6m0dpr83fi22sp8vwc7jxw598j91jhz55s51ihii0wfiwk26ym"; depends=[adjustedcranlogs bslib dfidx DT fastDummies ggplot2 htmltools idefix knitr magrittr matrixStats mlogit mvtnorm readxl remotes rlist rmarkdown shiny shinyBS shinycssloaders shinythemes shinyWidgets stringi survival tibble tidyr tidyverse writexl]; }; DCG = derive2 { name="DCG"; version="0.9.3"; sha256="08718x6v3g7kpfv0gpgm19cn3d3ynj7yagzs0jic1j5rwvn04pfb"; depends=[]; }; DCL = derive2 { name="DCL"; version="0.1.2"; sha256="0r9zigbxaa9w8501mishydyp47rpzfrx717m0ysly6nkxfm6g6d6"; depends=[lattice latticeExtra]; }; - DCLEAR = derive2 { name="DCLEAR"; version="1.0.8"; sha256="1riqsrzx9liq9fq9b4bfyfkixq879rzwa2yl202if8py42k1rnk5"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tidyr tidyverse]; }; + DCLEAR = derive2 { name="DCLEAR"; version="1.0.11"; sha256="0s56qyp9jrfkqf946w9hin2qfkmxcgg3ymcwj3v24gabvyqivjdm"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tensorflow tidyr tidyverse]; }; DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; DCPO = derive2 { name="DCPO"; version="0.5.3"; sha256="1h14xnii6kv6sc7pfxalif3bj0mifnxg46x4lwbixx9vzxxz96sq"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; DCSmooth = derive2 { name="DCSmooth"; version="1.1.2"; sha256="19pkj8z9wm4g8kxz1j3jw2n0bwldsyakipxvqpwnmlg2g5j8f5b1"; depends=[doParallel foreach fracdiff plotly Rcpp RcppArmadillo]; }; @@ -1036,7 +1039,7 @@ in with self; { DCluster = derive2 { name="DCluster"; version="0.2-8"; sha256="1ixn81jn0vmfi3hyqs1lq3dhpw2f5xkvq8r34pj8x3n664z2h8q4"; depends=[boot MASS spdep]; }; DClusterm = derive2 { name="DClusterm"; version="1.0-1"; sha256="04i9fyph2k3ffds0nv49371p8lw6dkzcf27pc98f99x0l6c8k5iq"; depends=[DCluster lme4 sp spacetime xts]; }; DDD = derive2 { name="DDD"; version="5.0"; sha256="13kqgj45afd0c5jkwi36j94v7l2bz60i3583z1jcvdxq913wwv5b"; depends=[ape BH deSolve expm Matrix phytools Rcpp SparseM subplex]; }; - DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; + DDHFm = derive2 { name="DDHFm"; version="1.1.3"; sha256="1xkjbhqipz6kqd6kw9682q5sbrvbpq4jn8nms3cv63b8x9nl1k55"; depends=[lokern wavethresh]; }; DDIwR = derive2 { name="DDIwR"; version="0.13"; sha256="0vczy1614k31s3skblzznpagwyf9qr3wdfrwvxdvck1c4albkmrp"; depends=[admisc declared haven readxl writexl xml2]; }; DDL = derive2 { name="DDL"; version="1.0.1"; sha256="176hvm3gl6dv9na3jjkqb27b8n4fwxsg8cazwkabv9jn12w4a93p"; depends=[glmnet Matrix]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; @@ -1047,12 +1050,13 @@ in with self; { DECIDE = derive2 { name="DECIDE"; version="1.3"; sha256="04hqr3r2ys6xni3a2mr2j45415wm3iix38xfxccrnx2wjk5w3b5b"; depends=[]; }; DEET = derive2 { name="DEET"; version="1.0.6"; sha256="0mx3v8bylckh808wdgbinnm9rl4jhgazfl8fh2xrlj4yxfwcsrd5"; depends=[ActivePathways downloader dplyr ggplot2 ggrepel glmnet pbapply]; }; DEEVD = derive2 { name="DEEVD"; version="1.2.3"; sha256="1wa3h0z5sk8zrwblzb8w7hgj9yqw56vqi3vsnpva53qynf42r2n7"; depends=[evd]; }; + DEGRE = derive2 { name="DEGRE"; version="0.2.0"; sha256="040hfpvqwl8r0iazwpnq7fmkydsxqc7mck7wbjqf6c19cw3zziz7"; depends=[car dplyr foreach ggplot2 ggpubr ggrepel glmmTMB parglm tibble]; }; DELTD = derive2 { name="DELTD"; version="2.6.8"; sha256="0s5qiy2cb6fcm9fnbzmqs2x39im5r1vb45avh9isc71f7xl3my36"; depends=[]; }; DEM = derive2 { name="DEM"; version="0.0.0.2"; sha256="17ibq5cavzkl2vfrmrkz77m28l4xpj97skad5pfvk1nhzyrg2k1l"; depends=[mvtnorm]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DEPONS2R = derive2 { name="DEPONS2R"; version="1.1.6"; sha256="1r37w7j46djpdcw1zw82c83r5ndqpdwham0g95qsqlhmvg709i9q"; depends=[jsonlite raster rgdal rgeos sp xml2]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; - DEoptim = derive2 { name="DEoptim"; version="2.2-6"; sha256="1qg2d4d076a99qdjfg0yyq5z1xc1zlwydwry00nj2rx0hdykjqwc"; depends=[]; }; + DEoptim = derive2 { name="DEoptim"; version="2.2-8"; sha256="0k7mvf7j8y1sqv8zpiwkw4xcmgki37drkxjijrsmmhkfybfan7k3"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-11"; sha256="0nqn12n5qlyk2zsgh57dvizy5z71xgqrhrcqj6lbzybm9c7v6x0q"; depends=[]; }; DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.5"; sha256="0c0590dzfvpmpjbgbnzpdgzmr3v97l136wzpjpbdw4c6pn3pyklw"; depends=[BayesFactor MVN]; }; @@ -1077,10 +1081,10 @@ in with self; { DIMORA = derive2 { name="DIMORA"; version="0.3.1"; sha256="11cq1fxlzs8m7hp6jchkz7fq7k50xm62aylv62m2ywyigk52hg84"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; - DIZtools = derive2 { name="DIZtools"; version="0.0.5"; sha256="1c66kpdaxbw4vnz3zwh5v35iy9ryb67pk34r1y9m1yvkwm0i8qaz"; depends=[cleaR config data_table logger magrittr parsedate]; }; + DIZtools = derive2 { name="DIZtools"; version="0.0.6"; sha256="1rc972cqdfx0pjj9g3k2ggfsf9mhs62d72zpn0r6m3i6b6aa64q9"; depends=[cleaR config data_table logger magrittr parsedate]; }; DIZutils = derive2 { name="DIZutils"; version="0.1.1"; sha256="0023zja8vsqsfndbi37ykr6838zakd5sz1w62kzaj9x05biqsi9v"; depends=[data_table DBI DIZtools Hmisc psych RJDBC RJSONIO RPostgres xml2]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; - DImodels = derive2 { name="DImodels"; version="1.1"; sha256="0767xanj4dck6hxx392fcavwsjz8d30wymxnabr5v8s7pcsmv18p"; depends=[hnp rootSolve]; }; + DImodels = derive2 { name="DImodels"; version="1.2"; sha256="0fylyadx7dph8iv5q25s86laxgwlsi399fj9l36g9dm3ngsffbsf"; depends=[hnp multcomp rootSolve]; }; DIscBIO = derive2 { name="DIscBIO"; version="1.2.0"; sha256="1m1c9ivblk3sir6lfq0msx2vlrx37dd5v7y6003k6fmsgrfpi9fs"; depends=[AnnotationDbi boot cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db philentropy png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne]; }; DJL = derive2 { name="DJL"; version="3.8"; sha256="0ry8zyr86qdb80fd9x2inrpdasfj13k2andm0wapd1k250018js8"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; @@ -1091,7 +1095,7 @@ in with self; { DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; - DMRnet = derive2 { name="DMRnet"; version="0.3.2"; sha256="0lk20addc4dwgcl39p1wahqj3ivx4qhv1s776blwvwwkig8mma68"; depends=[glmnet grpreg]; }; + DMRnet = derive2 { name="DMRnet"; version="0.3.3"; sha256="05d3qmz83p5nb5ib7fffn80g0qfvpnrz7s85fqa5ajfy72f4lmgc"; depends=[glmnet grpreg]; }; DMTL = derive2 { name="DMTL"; version="0.1.2"; sha256="0z6l1sylw4ib1mgqjnrmxh2q56vazg2i7xxiw1g4gm28iq44r2n0"; depends=[caret glmnet kernlab ks randomForest]; }; DMtest = derive2 { name="DMtest"; version="1.0.0"; sha256="1bziiyv63lcbmd79fykjj6b63igbbw0pwiq37k7q9l5vij6jfcj9"; depends=[doParallel foreach matrixStats]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; @@ -1111,18 +1115,18 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPQ = derive2 { name="DPQ"; version="0.5-2"; sha256="1x7rri6jh7832hka11wfm49qrxmk8kxbmcr79fq6flzmad64g5gv"; depends=[sfsmisc]; }; + DPQ = derive2 { name="DPQ"; version="0.5-3"; sha256="1jhvbyciqpbxsyi4zgn827nr3fywjc5q3ynji4i8x39i3lbwarw5"; depends=[sfsmisc]; }; DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; DPpack = derive2 { name="DPpack"; version="0.0.11"; sha256="1i2ic9w42pc1a5aqsy972rdk297q98vkqypj2vaxx0pav4m3l6lh"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DQAgui = derive2 { name="DQAgui"; version="0.2.1"; sha256="0k2nzkah8bjpipwaind5h1l7hpx4115kjwzncblwl5s63l7bg2gd"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; DQAstats = derive2 { name="DQAstats"; version="0.3.1"; sha256="1yyfab37rqfm77pb89vfkks5rz8il27h1kqlg6lq1q8sf2jqb2hn"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; - DR_SC = derive2 { name="DR.SC"; version="2.9"; sha256="0n2dv5ja7fyj54cd9y30mqyna3hdniwsk9xdjix6bgl1h0sj6phc"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; + DR_SC = derive2 { name="DR.SC"; version="3.0"; sha256="0mbq5mjgkn807zd5nkpd2j29v0kz4q6jw09cnzavgr1gqza1pbix"; depends=[CompQuadForm cowplot ggplot2 GiRaF irlba MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; DRDID = derive2 { name="DRDID"; version="1.0.4"; sha256="09dpl6fcl557vwhcr4zs5fdyfdd65jzj3hznkf1g138szpzqnphf"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; - DRHotNet = derive2 { name="DRHotNet"; version="2.0"; sha256="1hj321qy6jvdicxksnrkzwhdgzjs7pl1bxj6bm0135qjpfmj3v8m"; depends=[maptools PBSmapping raster sp spatstat spatstat_core spatstat_geom spatstat_linnet spdep]; }; + DRHotNet = derive2 { name="DRHotNet"; version="2.1"; sha256="0w1bi7amr0701m6gx9b4pm35qs4my9dgs1dwh2qklrk8b29jv2b3"; depends=[maptools PBSmapping raster sp spatstat spatstat_geom spatstat_linnet spdep]; }; DRIP = derive2 { name="DRIP"; version="1.7"; sha256="1926qmxxmmhbr6hwn4jkm553h5lj84g37rgvjy36kb4b8vpnlkd5"; depends=[]; }; DRR = derive2 { name="DRR"; version="0.0.4"; sha256="1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.3"; sha256="1pschc911zrcgy6vmh9aylz79qfifxvxrm5gxwah7xv50plpar78"; depends=[Matrix ROCR]; }; @@ -1151,7 +1155,7 @@ in with self; { DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; DTRreg = derive2 { name="DTRreg"; version="1.7"; sha256="0fr2c8fg1acs2kk0r67zml5fp71mvxw116ixqf7yq34n9ljd5yph"; depends=[dplyr MASS]; }; - DTSEA = derive2 { name="DTSEA"; version="0.0.2"; sha256="00jndqn4vyjymy6ys2rqxqd1fwf6bdqiv831g905k6nczxh8d7wv"; depends=[dplyr fgsea igraph magrittr tibble tidyr]; }; + DTSEA = derive2 { name="DTSEA"; version="0.0.3"; sha256="1f1di9ypq6f0929pq15xncf7zw16wlqap4rchbia27n39cv15dni"; depends=[BiocParallel dplyr fgsea igraph magrittr stringr tibble tidyr]; }; DTSg = derive2 { name="DTSg"; version="1.1.1"; sha256="1pg3xqkwv75pla3x3vdffmvzsjcaq5b91svykrr8q25p3ikfj6b6"; depends=[checkmate data_table R6]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; @@ -1184,18 +1188,18 @@ in with self; { DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; DatabaseConnector = derive2 { name="DatabaseConnector"; version="5.1.0"; sha256="0vc6rszv148qcjc8j4snskw9xlxb1mk3hbi3lnwllp9vxydqw1yf"; depends=[bit64 DBI readr rJava rlang SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; - DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.5"; sha256="1m5ydlyj54ybw38b6i78krrvqj29bp24x19xbqz9fgwpqimnv79y"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; + DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.6"; sha256="0i96664h4d6b76xk7c2vdma2am627acfzr79wyy8i17ciis452ph"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.8.2"; sha256="018733gm5z90qhbci6khxx27pn074si176mwnlq53bd6r722jiwm"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; Davies = derive2 { name="Davies"; version="1.2-0"; sha256="0n2pqipv0b1w2zjvycms0kyk7h8ps49f5jlzgyxhy9dlyr0ivaml"; depends=[mathjaxr]; }; DeCAFS = derive2 { name="DeCAFS"; version="3.3.1"; sha256="1508pl1jwp9ypfg31ygyrx1abckivv3xb69qd7hq6w1xvlkc83qr"; depends=[ggplot2 Rcpp robustbase]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; DeclareDesign = derive2 { name="DeclareDesign"; version="1.0.0"; sha256="151139zq0sx4mlskc054jn408j90l8603shrwx1qcgr2dljbwnfh"; depends=[estimatr fabricatr generics randomizr rlang]; }; - DecomposeR = derive2 { name="DecomposeR"; version="1.0.4"; sha256="0px999jzxnsl9mg4nch0zwzfjpm5mfj1yk5q42vbb7q42iv1ifbf"; depends=[colorRamps dplyr hexbin hht StratigrapheR tictoc usethis]; }; + DecomposeR = derive2 { name="DecomposeR"; version="1.0.5"; sha256="011j577gslh8nfykpxph4bprvv48nw9asy2j40dw016ai07h8n0s"; depends=[colorRamps dplyr hexbin StratigrapheR tictoc usethis]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.2"; sha256="1za2qvdq96f75rmnm421xmq8s01ny4666ghv14i72iy3s4ml2hq9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeductiveR = derive2 { name="DeductiveR"; version="1.0.0"; sha256="0bx1ad2gw0pf03z0im31mzaa26jxwws6fkbcj319kd8b4s4wp92y"; depends=[dplyr ggplot2 moments reshape2]; }; Delaporte = derive2 { name="Delaporte"; version="8.0.3"; sha256="1d1jkbxlwnqznh9pkjpkr7np2nmqzjvrdmlb210y1lb08mqmb73w"; depends=[]; }; - DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; + DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="1.1.2"; sha256="1qx82r04d0bnr8k961fgp4rmy62rw0xfzzdamyfc8f5r92lk18yr"; depends=[]; }; Delta = derive2 { name="Delta"; version="0.2.0.3"; sha256="0bi9qca4ky481zycp8r7ihvqfjkpvi7hb9wrjsw9avawqa6ck9bv"; depends=[]; }; DeltaMAN = derive2 { name="DeltaMAN"; version="0.5.0"; sha256="08barq4s7m3migjs80207n6l10pr3v2hb1dy72fi59j9x9xgnn4v"; depends=[knitr shiny shinyBS shinyMatrix xtable]; }; DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; }; @@ -1205,6 +1209,7 @@ in with self; { DendroSync = derive2 { name="DendroSync"; version="0.1.4"; sha256="0jypfdjcjqv2vd3l52hq696gdni303dw5l0nq9hhngc18v2imqa2"; depends=[ggplot2 gridExtra nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; + DependencyReviewer = derive2 { name="DependencyReviewer"; version="1.0.0"; sha256="1pa5cvh29kvv80nfganfd16xmrwpp51qwy6q0qwk0y8wy66isd26"; depends=[cli desc dplyr DT GGally ggplot2 ggraph glue here knitr lintr magrittr pak readr rlang shiny shinyAce stringr tidygraph tidyverse]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.5"; sha256="0i7fks5hglf3xj8cj3sghjf0xcldhiqwf0jlpyk2a3mj9gaszc76"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; DescTools = derive2 { name="DescTools"; version="0.99.47"; sha256="0dd1n2dwyh8sdsmmsqj670hmawffqck35qdanrgb4yfcc0zzmd1j"; depends=[BH boot data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi]; }; @@ -1219,7 +1224,6 @@ in with self; { DetLifeInsurance = derive2 { name="DetLifeInsurance"; version="0.1.3"; sha256="15yh66mn84cm5ix99lg5lp783dp8il03dyirkhil7m5pwzss42r4"; depends=[]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; - DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; }; DevTreatRules = derive2 { name="DevTreatRules"; version="1.1.0"; sha256="1h4p78mwl5ir31hfb38x1dwq5xxbdlsasvk5vxa3c7xdvhsd2yrf"; depends=[DynTxRegime glmnet modelObj]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; Dforest = derive2 { name="Dforest"; version="0.4.2"; sha256="19jyph2zqfyq9vv22kb6fqy89l0vcviv19zgk10hbd7q850f6ryn"; depends=[ggplot2 rpart]; }; @@ -1240,7 +1244,6 @@ in with self; { DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; Diderot = derive2 { name="Diderot"; version="0.13"; sha256="04d1drxn99r0fqq3zym7yyip9c8rfqhghq20q4zyb42l3hfgv9ai"; depends=[data_table doParallel foreach igraph RCurl splitstackshape stringi]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.2"; sha256="0q7slvyqajbr1pa4k3dc7jfn6qi6i2fnvh7hl49qi3a60yr55mir"; depends=[fdrtool igraph multtest pcaMethods]; }; - DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; }; DiffXTables = derive2 { name="DiffXTables"; version="0.1.3"; sha256="0a0q1fz80jlcrk4rw70yjb8djxgsm5axih45vi4dqpg6n8xlrzw2"; depends=[pander Rdpack]; }; DirStats = derive2 { name="DirStats"; version="0.1.8"; sha256="0drk6b7nncsydvikxy2jh7kmsjvkwx32csh0r8ygn9hdqliw4pfk"; depends=[movMF rotasym]; }; Dire = derive2 { name="Dire"; version="2.1.0"; sha256="1hpa8mgb7mpnq679qbb37wll9ng1ar4zbqr0ca16kn26rg95ywbp"; depends=[foreach haven iterators MASS Matrix Rcpp RcppArmadillo]; }; @@ -1260,7 +1263,8 @@ in with self; { Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; DistPlotter = derive2 { name="DistPlotter"; version="0.0.2"; sha256="0aws4qs6802y42m07ca9m4i0lza282g6kfzx64q652y52md862gk"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; - Distance = derive2 { name="Distance"; version="1.0.6"; sha256="07cqamddcycyjwppnxjccyq33nycb9kf76irfr8x634wr9ybwn4k"; depends=[dplyr mrds rlang]; }; + Distance = derive2 { name="Distance"; version="1.0.7"; sha256="1ilp1gmxk92ycipzzvwpnry62kw0jdfch3ga2y0jhxsbp41km13p"; depends=[dplyr mrds rlang]; }; + DistatisR = derive2 { name="DistatisR"; version="1.1.1"; sha256="0r8gp84kbl8kbsw3kbp8sk0xc2gav074qc9qlkq06bp0sxycwhyw"; depends=[car dplyr prettyGraphs readxl tidytext]; }; DistributionFitR = derive2 { name="DistributionFitR"; version="0.1"; sha256="0wg43gqsdy1ja0l489k27k9q1w2zq45wzmqnv9wfc734rf8kvlba"; depends=[doParallel foreach stringr]; }; DistributionOptimization = derive2 { name="DistributionOptimization"; version="1.2.6"; sha256="0pp0f7c9szyx426bnnz4fz4vh5q73m8x896z6pqgx04b6v445361"; depends=[AdaptGauss GA ggplot2 pracma]; }; DistributionTest = derive2 { name="DistributionTest"; version="1.1"; sha256="11xhr6yv42s1i4qqlb1pvzm8q2116v10gjlkhl0ml3id6lx27nmj"; depends=[MASS]; }; @@ -1279,7 +1283,7 @@ in with self; { DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; - DoubleML = derive2 { name="DoubleML"; version="0.5.1"; sha256="0v4dyjgs1gim06cjv1hi7n2zpjzj16405rh24rvcixr60n8gzqh5"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; + DoubleML = derive2 { name="DoubleML"; version="0.5.2"; sha256="1984slxllcl9kk7zch8xz8w1asnnqscf4mn0cy3wqbl7vd8dc01z"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; DrBats = derive2 { name="DrBats"; version="0.1.6"; sha256="1623h8s6y4klq8xmj480ga2wl6n4c2f26v1dwysyvcrk6lnaghdm"; depends=[ade4 coda MASS Matrix rstan sde]; }; @@ -1288,19 +1292,19 @@ in with self; { DramaAnalysis = derive2 { name="DramaAnalysis"; version="3.0.2"; sha256="0nsnwais0r592c50nphfzkr1bbygl67mriwsx7dxbvmpdsswlvl1"; depends=[data_table git2r httr readr reshape2 stringr tokenizers xml2]; }; DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; - DriveML = derive2 { name="DriveML"; version="0.1.4"; sha256="0177bglwzxsglv5aaddl03fvxyq31ikcwfyws36jg8q8s7p60w49"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; }; + DriveML = derive2 { name="DriveML"; version="0.1.5"; sha256="0gbrrlz40cs95ml92k7q1lrxkm9iv5bjsr2sy9c7jzygnrlmnmms"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; + DrugSim2DR = derive2 { name="DrugSim2DR"; version="0.1.0"; sha256="16m1gqs5m7pi8nlr6n8wh7dk3wjjiwhiqm96h8jxavfizv0bkj6n"; depends=[ChemmineR igraph pheatmap reshape2 rvest sp tidyr]; }; DstarM = derive2 { name="DstarM"; version="0.4.0"; sha256="0wm5kr2pkgbvh9svjq8zq46zn50hwf58rs3y1ybnwcfjc2q75h1s"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; DtD = derive2 { name="DtD"; version="0.2.2"; sha256="1czspjdxjhbfk2df7wk0x3d1ilwrjqw4s4gdc4hq0gjcjqyx0c39"; depends=[checkmate Rcpp RcppArmadillo]; }; DySS = derive2 { name="DySS"; version="1.0"; sha256="1aa67m224bhzzg089rhxwqgbmwwq5py8ikix8khwraz5cnjz2f83"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; DynClust = derive2 { name="DynClust"; version="3.24"; sha256="0nbbzx0ixblpcbjxx0gp7082nz6nh5vc2l5nzdfq1mqzlq9jy2xn"; depends=[]; }; - DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; }; - DynForest = derive2 { name="DynForest"; version="1.0.0"; sha256="1ldwhn971sr6cxbk2z5kd6wfwqhv5bjcb5rqzf29wqskqb5rjh4p"; depends=[cmprsk DescTools doParallel foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; + DynForest = derive2 { name="DynForest"; version="1.1.0"; sha256="0fnszfbk2gkgff48cv6ij87w44hspkw62flvgvkwf6hlbb5j64k7"; depends=[cmprsk DescTools doParallel foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; DynNom = derive2 { name="DynNom"; version="5.0.2"; sha256="1zs8chdw83qjsi5k1m9cvk48swqz3gadycmhk4prxmjzwcl5z4i1"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="4.11"; sha256="181hmfkv0sgxlllfhx0rwl57r1ql2iy19iipsrvkabflqhzdr8cc"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; - DynamicGP = derive2 { name="DynamicGP"; version="1.1-8"; sha256="1ivrxm0asagvp0ay6hp1l29fv3mcfmad938mwxdcq3iaaj31ilvc"; depends=[lhs]; }; + DynamicGP = derive2 { name="DynamicGP"; version="1.1-9"; sha256="00hf3r39b9xid129kzgdnwdfrwrspxkz7dydgna3c5lrl7670paz"; depends=[lhs]; }; DynareR = derive2 { name="DynareR"; version="0.1.3"; sha256="06n0gsbn8gphsirj3l1izd84dnjnik6n5l4vkp8flkzynccx3rps"; depends=[kableExtra knitr magrittr]; }; DysPIA = derive2 { name="DysPIA"; version="1.3"; sha256="0ih8sl89h6xbmmjjsbxcvgp6wqk7f1wqzwkc43k3i5w7fgb0hlpc"; depends=[BiocParallel data_table DysPIAData fastmatch parmigene Rcpp]; }; DysPIAData = derive2 { name="DysPIAData"; version="0.1.2"; sha256="1i4z9xhnzih7jnj3l1d6wpgfsayb452sh4q99w2npg1iipsjb1vl"; depends=[]; }; @@ -1314,12 +1318,13 @@ in with self; { ECGofTestDx = derive2 { name="ECGofTestDx"; version="0.4"; sha256="0y8bw1k9spwxyzc7vsi2iblnmjsidxbybjrzzh2j6frjmv3rk4g1"; depends=[bootstrap orthopolynom]; }; ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.5.4"; sha256="0973m346vakgddp92dzqlky0wa196hj341r9y7rz67bc2zl8jx2x"; depends=[]; }; - ECOTOXr = derive2 { name="ECOTOXr"; version="0.1.1"; sha256="1pwncfvjcaniixc3iljjapp1d2pvf5xqj060jbf9bpdfyn6lrcdj"; depends=[crayon dplyr rappdirs readr RSQLite rvest stringr]; }; + ECOTOXr = derive2 { name="ECOTOXr"; version="0.2.0"; sha256="0gpzf957ya02695ga8cv3mw17jb027w10pjxq9r5ziky54wnh7qh"; depends=[crayon dbplyr dplyr httr purrr rappdirs readr rlang RSQLite rvest stringr tibble tidyr tidyselect]; }; ECTTDNN = derive2 { name="ECTTDNN"; version="0.1.0"; sha256="1ddwf040yp4c7nxvivml0xhad5qdc6jlf17c1lh4mssm5c0pp14w"; depends=[forecast urca vars]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; }; ECoL = derive2 { name="ECoL"; version="0.3.0"; sha256="02j4yl6hi83f6m529r6n0gaz8wsy2pi0ncy2g95fjhs8ib0kfn4f"; depends=[cluster e1071 FNN igraph MASS]; }; EDA = derive2 { name="EDA"; version="1.3"; sha256="08zqykvga7w07iy00c94q03mrxmjv649ggk7lmksjzy5j3wgyb6d"; depends=[ggplot2]; }; + EDCimport = derive2 { name="EDCimport"; version="0.2.1"; sha256="1d80dsfi94yg95lcnq60nnfpfd2bphqrd68k7ilcs809v95da4nx"; depends=[cli dplyr forcats glue haven labelled purrr readr rlang stringr tibble tidyr]; }; EDFtest = derive2 { name="EDFtest"; version="0.1.0"; sha256="1z6ayi0513ibyk0gjfxcd1rybp5374xhbf9zkkm669wdmfggx26h"; depends=[CompQuadForm rmutil]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDIutils = derive2 { name="EDIutils"; version="1.0.2"; sha256="1yfn26js5sdr7k07s45mqxla6apzb4ykwa5pa634zgivqs6g9jry"; depends=[curl httr jsonlite xml2]; }; @@ -1341,12 +1346,12 @@ in with self; { EGAnet = derive2 { name="EGAnet"; version="1.2.3"; sha256="10vfv8fkk8kfcspp4p8avz16ipj58231q43rzrmwmcfx362q3g48"; depends=[GGally ggdendro ggplot2 ggpubr glasso igraph lavaan Matrix matrixcalc network OpenMx pbapply qgraph semPlot]; }; EGRET = derive2 { name="EGRET"; version="3.0.7"; sha256="1fxpcdsq7njf1hjy3a4i0fx0ah9v7jzmdwg4c7009nikyhx5ri6x"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; + EGRNi = derive2 { name="EGRNi"; version="0.1.6"; sha256="0wgdhlmnch6gpypqlwd5z56ia03lbbimr4ci9gcfs8f881dh92dy"; depends=[fdrtool gdata MASS readr]; }; EHR = derive2 { name="EHR"; version="0.4-10"; sha256="062smk24f3jv7m0833h6nygrk7pq3n85a5sq1j752i0z1j2px3np"; depends=[data_table lubridate pkdata]; }; EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; }; EIX = derive2 { name="EIX"; version="1.2.0"; sha256="02ry0aqqnd0zh6zbvx1dbq3sdahyqcgabhkvbbw4ig0qk70w62aj"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; - EL = derive2 { name="EL"; version="1.1"; sha256="0a6zbsq37miy7mv1b2gn3nlddlxpl6v5338lqxa2hn8ykj4vbs63"; depends=[]; }; EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; }; ELCIC = derive2 { name="ELCIC"; version="0.2.0"; sha256="1iildkyiia2zinnfjyxvcmc1xd7chrcsdqzc0v7cl9b1jsqa8361"; depends=[bindata geepack MASS mvtnorm PoisNor wgeesel]; }; ELISAtools = derive2 { name="ELISAtools"; version="0.1.5"; sha256="18f2adhw85f0hsz5gb6xhi0w2phcq364xy9y1jri6ckzs8g0pny7"; depends=[minpack_lm R2HTML stringi]; }; @@ -1362,7 +1367,7 @@ in with self; { EMDANNhybrid = derive2 { name="EMDANNhybrid"; version="0.1.0"; sha256="0mm5zfkrja9pz58psp7b6r1lpixaa9y685xxv9srv9l9cl8d892j"; depends=[EMD forecast nnfor]; }; EMDSVRhybrid = derive2 { name="EMDSVRhybrid"; version="0.1.0"; sha256="0wis8dh4xd5xldrrfzfr625pix2fvp139q6kj9ff2m6p5wafiabw"; depends=[e1071 EMD]; }; EML = derive2 { name="EML"; version="2.0.6.1"; sha256="1k2chfz6qixa6jsikqgilqp8j49mcshn725ck1h77bacfxfhf7za"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; - EMLI = derive2 { name="EMLI"; version="0.1.0"; sha256="17gcrqw3dnv48jiqxldf0y00ncr75521r4cp4p4q0v2cj3h6fl2h"; depends=[]; }; + EMLI = derive2 { name="EMLI"; version="0.2.0"; sha256="0zwbbxsmkyrgmva5h8l78f181nz5asc7dpdcmajvj2y3yl1rb278"; depends=[]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.7"; sha256="1wz4zw45xfqbk589cpd188j7619h2ar2czfkisil9x8ksijfixls"; depends=[caTools GPArotation limSolve matrixStats shiny]; }; EMMIXSSL = derive2 { name="EMMIXSSL"; version="1.1.1"; sha256="1z8mqh4d0vlxhk2mvpxwypr5labra3z4xsvpm4li1v4hga791h0v"; depends=[mvtnorm]; }; EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.3"; sha256="0a5q78s9y6ba1641lrv87kglg39x9wbk5xg7ihzbpl4adrb5sz4f"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; @@ -1375,10 +1380,9 @@ in with self; { EMSS = derive2 { name="EMSS"; version="1.1.1"; sha256="0zkr2xfvwlqxcfj59801vm54l38agipbkd9qgq6jkmqkdbkfv3yr"; depends=[mvtnorm sampleSelection]; }; EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.2"; sha256="07c25nw8n6294f7q1axwraqp4x2p5dprgd8f9sldn2w6jslzvvc8"; depends=[]; }; - EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; }; EMbC = derive2 { name="EMbC"; version="2.0.3"; sha256="0ns6jmshblf00n4harhls03q9c6h1wvgvjzn8jvr3kf4gm2iz2jd"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.2.0"; sha256="1f8s6p3h5594aajrvrx8iv5x8m97xbc1pynsrk6i13aw5r73ysb1"; depends=[]; }; - ENMTools = derive2 { name="ENMTools"; version="1.0.6"; sha256="0idjq7jk1yrbk9w0799x991n1sj71j09hkgn6dhwshgpyxh7c4qj"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat_geom spatstat_random]; }; + ENMTools = derive2 { name="ENMTools"; version="1.0.7"; sha256="1sm64c9d5ph8sp5lzkzkd93iy8hls73xfshvjgnmqmd6zh4xp70g"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat_geom spatstat_random]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.3"; sha256="0h9wikxs01xhpkp1khhxnnqvg4fgmdvh37jh15nz7i4xilx1ffab"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster rlang sp testthat tidyr]; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; EPT = derive2 { name="EPT"; version="0.7.6"; sha256="1hkisfisi63dd9lai662y387av1g77fkbai0p2a346n8zgahysji"; depends=[]; }; @@ -1390,7 +1394,8 @@ in with self; { ERSA = derive2 { name="ERSA"; version="0.1.3"; sha256="0djh633vmc89vl4bp7p4bazlb0pshpd2yckfj0yjk6vc9lrbql69"; depends=[broom car combinat dplyr ggplot2 leaps miniUI purrr RColorBrewer shiny tidyr]; }; ESG = derive2 { name="ESG"; version="1.2"; sha256="17kw82dikcibqsdb1fvbx2x2f3shzbqggygabprcvwki8bg9hgni"; depends=[]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; - ETAS = derive2 { name="ETAS"; version="0.4.9"; sha256="11sv5slr3s6w82ksgbw0qlzi9palznbzprq2n9iiifxz6ff5drvd"; depends=[fields goftest lattice maps Rcpp spatstat_core spatstat_geom spatstat_random]; }; + EScvtmle = derive2 { name="EScvtmle"; version="0.0.1"; sha256="09sh9njnrv8bh6xlni3jmhwrp3yb6xxfx6di2ykam6mi50djknbf"; depends=[dplyr ggplot2 gridExtra MASS origami stringr SuperLearner tidyselect]; }; + ETAS = derive2 { name="ETAS"; version="0.5.1"; sha256="03721z7fsbkqv5wiybm01nxbl99x8wf2214y3w139k0zr42xk94s"; depends=[fields goftest lattice maps Rcpp spatstat_explore spatstat_geom spatstat_random]; }; ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; EUfootball = derive2 { name="EUfootball"; version="0.0.1"; sha256="0h36cqi752zs32gs55rdniabldr8jph7gc1y2yb9983cl4mfrjv0"; depends=[]; }; @@ -1401,7 +1406,7 @@ in with self; { EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="3.1.1"; sha256="0scslbgbbwma7sr0w9awg58ly5jwn877xsk6q1gq0ss3rd17pmfk"; depends=[ada BiocStyle e1071 GA gbm glmnet optimx ROCR rpart]; }; Eagle = derive2 { name="Eagle"; version="2.5"; sha256="18y0hc5461gh7kp095xfpwpfnl7k3v545r8w6nrhabrhwsflrrij"; depends=[data_table fontawesome ggplot2 ggthemes mmap plotly R_utils Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; - Ease = derive2 { name="Ease"; version="0.1.1"; sha256="1aydwpb5wl3jvqkgf9gp4cc72rmh6206ci6p4v77jwbyzak53ldc"; depends=[Rcpp RcppProgress]; }; + Ease = derive2 { name="Ease"; version="0.1.2"; sha256="0llx3pdpzjsw94nk62h6cif4gn97rhbq38vsqpdarx201q8qq2qx"; depends=[Rcpp RcppProgress]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyDescribe = derive2 { name="EasyDescribe"; version="0.1.1"; sha256="15g37m28l40w71bvj02cbhfc6x77bjvr8mjr89iipdqzndp23g1i"; depends=[CATT fitdistrplus FSA gmodels multiCA nortest psych rcompanion]; }; EasyMx = derive2 { name="EasyMx"; version="0.2-12"; sha256="00wj08nwv5zi5d4a1fss40f4cms4svam1hmmxvh60hvc55ygsc3z"; depends=[OpenMx]; }; @@ -1409,6 +1414,7 @@ in with self; { Ecdat = derive2 { name="Ecdat"; version="0.4-2"; sha256="1vyc4ynkd65mng2x8wvzn47crsvaqfz97n89jxn12xv13bpsbs7c"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.3-2"; sha256="1q0mx70hy18rabpabxghaixkb3r1432cxln844cac4dqxhvzcqgy"; depends=[BMA fda jpeg MASS mvtnorm rvest stringi TeachingDemos tis xml2]; }; EcoDiet = derive2 { name="EcoDiet"; version="1.0.1"; sha256="1yc120fs4bprn9ifh59n6y671wa5vi7r6k0ldp9fzy5asax00ds8"; depends=[coda ggplot2 rjags]; }; + EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.1"; sha256="1b0zm8d4dc2drdy08s5gskjdjl0i91ng78xk6aga17bjgm5hjqsi"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.8"; sha256="008wgp9zc8a8knz9ighgavrdm0yf37m5jahnq5kndjhld0359z6h"; depends=[rgeos]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.3"; sha256="05j8m9vzkwlsw1h69s5myhbg85vyhqdxcl9r5mdwsrk9f58wajmz"; depends=[ggplot2 igraph]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6.1"; sha256="0nrq6n7amz8l6rk0wfyrih7rkic96yc02rpk4szis81v7yvm7346"; depends=[XML]; }; @@ -1433,7 +1439,7 @@ in with self; { EloSteepness = derive2 { name="EloSteepness"; version="0.4.6"; sha256="09rdiy50zxj61vs1pq522l36g0zkhvrdf6kgb1r11jjryxrik8zq"; depends=[aniDom BH EloRating Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.2"; sha256="1lsapsz8w8srdqdkxvlg5nsn157wbihxjgdaf53r5iaxzcljkzxc"; depends=[digest kinship2]; }; EmbedSOM = derive2 { name="EmbedSOM"; version="2.1.2"; sha256="0k4hja5y7qd0n3gfaxzxrz4wpxc1w9d4d4xbb63rq2nfk3lj7a42"; depends=[FNN ggplot2 igraph Matrix Rtsne umap uwot]; }; - EmiR = derive2 { name="EmiR"; version="1.0.3"; sha256="0cf05k8iaa18j4hqyz713ibaw03h9pcf440n0yc6l256iq5xwsrx"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack testthat tibble tictoc tidyr]; }; + EmiR = derive2 { name="EmiR"; version="1.0.4"; sha256="1xhsf9n5af6z7v62vpnqjlp20s6fp7jf1wmgxgv77hxm4g5cm0q7"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack tibble tictoc tidyr]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.3.0"; sha256="1cwzzkynhnpjd1slnifdmkrshfpv99ryilxj27f98kwgbnb6i81a"; depends=[doParallel foreach lattice xts zoo]; }; EmissV = derive2 { name="EmissV"; version="0.665.6.3"; sha256="1cazd2njbiacwwkxrs0qvy6p533wal18s9cjvavxcx0c2607r725"; depends=[data_table ncdf4 raster sf sp units]; }; EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="3.1.1"; sha256="11kam8scb5hbp6bfk41xwjfmrwnvwaba2xksjsw1rdlrfbljs8p1"; depends=[ggplot2 gridExtra Rcpp rlang]; }; @@ -1461,7 +1467,7 @@ in with self; { EpiEstim = derive2 { name="EpiEstim"; version="2.2-4"; sha256="12zv1mlb0gqsvff1s0fvqgxqk42c7y9gz3h94mjmf1wbmhsjcqnf"; depends=[coarseDataTools coda fitdistrplus ggplot2 gridExtra incidence reshape2 scales]; }; EpiILM = derive2 { name="EpiILM"; version="1.5.2"; sha256="0drs4qywx9axs7k5qk7sp5r3g8pykn4lqqbm0hxyl24r6b5l3d6b"; depends=[adaptMCMC coda LaplacesDemon]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.7"; sha256="1yjcjxf5m1qbb6p09g34wkr4q13g65ly11kxh95r22cdl85jmlq3"; depends=[coda igraph]; }; - EpiInvert = derive2 { name="EpiInvert"; version="0.2.1"; sha256="0ghfs8g4fj4yr8scmvnqbc7j1pj5yjwlvqb2xbkisvvli82qhrk3"; depends=[Rcpp]; }; + EpiInvert = derive2 { name="EpiInvert"; version="0.3.0"; sha256="03xvcrh2gf5rnisq0kza5ny066asjq2igk53a423xq7i09xlr1zg"; depends=[Rcpp]; }; EpiLPS = derive2 { name="EpiLPS"; version="1.0.6"; sha256="0453vi4h988syd9jab0xmy19vl2m8z30jcymc1a1hcfpnw88hl8z"; depends=[coda crayon EpiEstim ggplot2 gridExtra MASS progress Rcpp RcppArmadillo]; }; EpiModel = derive2 { name="EpiModel"; version="2.3.1"; sha256="1fwk6wkqy2z3cv0jhi6mz077qjwlcqhd57lpiv6i6iajizcf4bas"; depends=[ape coda deSolve doParallel dplyr ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer Rcpp rlang statnet_common tergm tibble]; }; EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; @@ -1476,7 +1482,7 @@ in with self; { EstMix = derive2 { name="EstMix"; version="1.0.1"; sha256="13zwhxm0qm83c8k5k4slvq2snkmbq1zz3i5cqvxxwhvkb4b8aja4"; depends=[PSCBS Rcpp RcppArmadillo]; }; EstimDiagnostics = derive2 { name="EstimDiagnostics"; version="0.0.3"; sha256="036kz4zdrgqab2mbzxmbknr9314ap5b2dp75syqhg2mmzw3zf3li"; depends=[foreach ggplot2 goftest reshape2 rlang testthat]; }; EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.3.1"; sha256="06ihyiq9dw7yg8qpq3yckpd0jk4gjajgvavbj302sj0qssrxgyzh"; depends=[dplyr ggplot2 igraph qgraph]; }; - EstimationTools = derive2 { name="EstimationTools"; version="2.1.0"; sha256="1dpn4jb746ax3s7p7hkrk85hkxjayxp641vxbfp155v0m2gr8ar2"; depends=[autoimage BBmisc boot DEoptim matrixStats numDeriv Rdpack stringr survival]; }; + EstimationTools = derive2 { name="EstimationTools"; version="4.0.0"; sha256="1hwlrsxl42n4i25f1izhccj755aydl2r98w1jn12z9a62wk9nnzy"; depends=[autoimage BBmisc boot DEoptim GA gaussquad numDeriv Rdpack stringr survival]; }; EthSEQ = derive2 { name="EthSEQ"; version="3.0.0"; sha256="1gmyf0qsixc8nsl9zzk7rb230zjv0p9vvp2zhr5q3xsic594mf1v"; depends=[data_table gdsfmt geometry MASS plot3D Rcpp SNPRelate]; }; EuclideanSD = derive2 { name="EuclideanSD"; version="0.1.0"; sha256="1w5s1zkb81v150nvaygvyla2x0vh4c99vd5jw53jcq68sv9hby3i"; depends=[shiny]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.1"; sha256="12311s6ibw9q6kykhh689r93r7mwjhwrhkzdpc75grvw6ilgjmpm"; depends=[clinfun data_table plyr shiny VGAM]; }; @@ -1492,7 +1498,7 @@ in with self; { EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.3.0"; sha256="1qpvbs8a1xbm6vim82xxarhmbj999f4wangav5hcnmbwbrvxihxx"; depends=[BeastJar coda Cyclops EmpiricalCalibration ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; EviewsR = derive2 { name="EviewsR"; version="0.1.5"; sha256="0dybfkpg5zr6bh84dh7v4vyxk4xv09v9hv8ijxj0h41mi5zpqap9"; depends=[knitr magrittr xts zoo]; }; - EvoPhylo = derive2 { name="EvoPhylo"; version="0.3"; sha256="102f45wgyxrkz4snmv03z5xjli92z54l9mas38ndpg0fs8czqznv"; depends=[ape cluster deeptime dplyr ggplot2 ggrepel ggtree patchwork Rtsne treeio unglue]; }; + EvoPhylo = derive2 { name="EvoPhylo"; version="0.3.2"; sha256="1jgvvi355dxrjqniwcga7gzfj0jw3hgwbii2cv055rq9z5f442mr"; depends=[ape cluster deeptime devtools dplyr ggplot2 ggrepel ggtree patchwork Rtsne treeio unglue]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.2"; sha256="0aaqd4q8imm2wgkgdpwwdl6nxgr3apgb3l24f2lwxgv2y045309d"; depends=[deSolve geometry ggplot2 interp MASS reshape2]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; EwR = derive2 { name="EwR"; version="1.4"; sha256="1i0cwyylr1lqilykn1q2y1ad2gawfqkw9c51g04yn061c623pkam"; depends=[]; }; @@ -1508,12 +1514,13 @@ in with self; { ExcessMass = derive2 { name="ExcessMass"; version="1.0.1"; sha256="1ycvv3bm9qq11imc09jhwhb1vb2cbngckmb3ibj4hfl697gaby5v"; depends=[]; }; ExclusionTable = derive2 { name="ExclusionTable"; version="1.0.0"; sha256="1adanj3rnk9vhz89rgl25w10ghm2xn1rl99ilnmpkq5jdblcifkx"; depends=[dplyr magrittr]; }; ExhaustiveSearch = derive2 { name="ExhaustiveSearch"; version="1.0.1"; sha256="1wb3bf1ilml5cilm740rh8ngiybxhxg6h6nzh1rlqd6wgfp17mzh"; depends=[Rcpp RcppArmadillo]; }; + ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.16"; sha256="1r7b9h5i562fa67ghisyw6ciwawfyjwrpn95kdws4dd4gqgbb9kv"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; }; ExpAnalysis3d = derive2 { name="ExpAnalysis3d"; version="0.1.1"; sha256="0gch9q19l3lqb35vfq1kcrga9jzqvrxr7d6x9lk7nzb78y735wa2"; depends=[crayon fields magrittr plotly]; }; ExpDE = derive2 { name="ExpDE"; version="0.1.4"; sha256="0yjsap92dd1sb23fhw69i0ddk3lyj5f4kwp9rvz4k0vxry10hx7g"; depends=[assertthat]; }; ExpDes = derive2 { name="ExpDes"; version="1.2.2"; sha256="145x7zzhgs7rqbamsfwcxlhppxmy9l6v4a1wximac8qgp7i0wdpi"; depends=[stargazer]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.2.2"; sha256="05s7j3afs97x0k4w9rsjic1519ilzri250x5rl6l6smqivjaplci"; depends=[stargazer]; }; ExpGenetic = derive2 { name="ExpGenetic"; version="0.1.0"; sha256="096cxaqbc9y0bnj70fxk94585c880020pqqcx0dwwj839qkry4ha"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; - ExpImage = derive2 { name="ExpImage"; version="0.6.0"; sha256="1m6s5prwas82s1ypylwcpmfqkrjskb7ms1592bj4gvvhgmlqc9h3"; depends=[crayon doParallel foreach ggplot2 progress raster rstudioapi schemr]; }; + ExpImage = derive2 { name="ExpImage"; version="0.7.0"; sha256="0wzq10qv6m3r65g8gzv4ikpwmymmf5rspba5slrqrclmpl1wgvn5"; depends=[crayon doParallel foreach ggplot2 progress raster rstudioapi schemr]; }; ExpRep = derive2 { name="ExpRep"; version="1.0"; sha256="0spv3wd9c8sr338n5kdzrs28yh7s90fl70wsdnkibmlxhnh3ay3g"; depends=[]; }; ExpertChoice = derive2 { name="ExpertChoice"; version="0.2.0"; sha256="1pd4v240ywc4wzh249axxb4kz5dccizc08jdjnaygz35hjdg5hvj"; depends=[DoE_base dplyr far purrr rlist]; }; ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.3.0"; sha256="14m3b9fsrpfpr8avsnhl8b3bzk2xlhwgkwag5iq8bj7bzvv4yck1"; depends=[CORElearn semiArtificial]; }; @@ -1528,7 +1535,7 @@ in with self; { FABInference = derive2 { name="FABInference"; version="0.1"; sha256="0d11vxxa0mry735n7an8n97wmxyffsj4hirxlysljs941zhkhhw4"; depends=[MASS]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; FADA = derive2 { name="FADA"; version="1.3.5"; sha256="0srv3rghbkgyxbcjc1v68c5qgcir1d618skpc8imfmdaz9pnxchn"; depends=[corpcor crossval elasticnet glmnet MASS matrixStats mnormt sda sparseLDA]; }; - FADPclust = derive2 { name="FADPclust"; version="0.1.0"; sha256="0b4b77wi25ldrq4w2vqhh3g1sm89ad0ghajfmfaqp84v30d8hcpw"; depends=[cluster fda fda_usc funData MFPCA]; }; + FADPclust = derive2 { name="FADPclust"; version="1.1.1"; sha256="111lpq5hdrpyj8wdscjswk5p4akxhj3jbj5xk6ias2s5gfprla14"; depends=[cluster fda fda_usc fpc funData MFPCA]; }; FAIRmaterials = derive2 { name="FAIRmaterials"; version="0.0.2"; sha256="169hcwjm0plhkqbhz3b5cqgc2nnkibn94cimrs39sn9z62radb7x"; depends=[dplyr glue stringr]; }; FAMT = derive2 { name="FAMT"; version="2.6"; sha256="0msb02fz8blm6wgg31xwwxv8phg35w7844q1xz4v307ixz2qgs1h"; depends=[impute mnormt]; }; FAMetA = derive2 { name="FAMetA"; version="0.1.4"; sha256="1c5y3x06ln1w8nkwmnc13hn8jhj0vbmwbx70kylcf93a1fq5rkbz"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; @@ -1559,17 +1566,17 @@ in with self; { FER = derive2 { name="FER"; version="0.94"; sha256="0319dz0qvk8s9cfngqas3j212bw0f4rzw3gqcd7r7sl0249dla7p"; depends=[statmod]; }; FESta = derive2 { name="FESta"; version="1.0.0"; sha256="1kf5iqw8x8079gjaxicrgax5l798l8hxcc5y83l5pqh0ync5bxm6"; depends=[]; }; FEprovideR = derive2 { name="FEprovideR"; version="1.1"; sha256="02hfdk9qhaq4y19p700w2i7qsdp4z2kyww0pr0pijfivkqks0vpi"; depends=[ggplot2 Matrix poibin]; }; - FFD = derive2 { name="FFD"; version="1.0-8"; sha256="0kb654pvb0z0zpf88yc3dkd8n3qfiqjhdmv9rk5y06f2hjydn0i3"; depends=[R2HTML]; }; + FFD = derive2 { name="FFD"; version="1.0-9"; sha256="1478sxfz4cv43nmvhg0d0w82kmyr4rfhhrrlrq4aanbxnriggkxr"; depends=[R2HTML]; }; FFTrees = derive2 { name="FFTrees"; version="1.7.5"; sha256="0aqi8r5nrsvlzlw9aiqmqk8r0h5nng3cj57h23a3iqgzv7nwb443"; depends=[caret crayon dplyr e1071 knitr magrittr progress randomForest rpart scales stringr testthat tibble tidyselect]; }; - FFdownload = derive2 { name="FFdownload"; version="1.0.6"; sha256="1n5mmx7mgdfbxqqgv1hv3l9z7vwykp17r1ca9l7d8jcwslygbbyz"; depends=[plyr rvest xml2 xts zoo]; }; + FFdownload = derive2 { name="FFdownload"; version="1.1.0"; sha256="050mn48q36585s2xf0dbsb385rla1jnnlkppnagrijdpmkvjzfy9"; depends=[plyr rvest timetk xml2 xts zoo]; }; FGLMtrunc = derive2 { name="FGLMtrunc"; version="0.1.0"; sha256="15pj2dmgbjbx4xi585rqggnp05xzpg9pn2iy76ibgkdvjqknkwii"; depends=[foreach glmnet Rcpp RcppArmadillo splines2]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.5"; sha256="00mql2r4f5hxhdqf27q3x9s5rz2zzakx2myym97b1w1s7c5znl4q"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; - FIESTA = derive2 { name="FIESTA"; version="3.4.2"; sha256="1wcd18y9az52grc95s2g88z7qwf7q5fnzrxn3znfcnj6g44fybll"; depends=[data_table DBI FIESTAutils largeList rgdal RSQLite sf sqldf]; }; - FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.3"; sha256="0c3b17i01cikryj3yiixjd589jsz9i5f7fn2mvknv9rwls3wpjri"; depends=[data_table DBI hbsae JoSAE largeList mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; + FIESTA = derive2 { name="FIESTA"; version="3.5.0"; sha256="1jg8s08iz6l3pggybdsrzi91r5nxm8yvy1cabrxl0s861h98r3m3"; depends=[data_table DBI FIESTAutils largeList rgdal RSQLite sf sqldf]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.4"; sha256="0zciqzp7cwgz5awxnfhdi9d8akaylvicwnnwkpn3lv4135rvkwhi"; depends=[data_table DBI hbsae JoSAE largeList mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; @@ -1591,7 +1598,6 @@ in with self; { FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1.3.1"; sha256="0nmynpiy3d2dnd5ngjf4m79jy02byhk43gj0xny9a6j8243f5c2j"; depends=[]; }; FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; - FORTLS = derive2 { name="FORTLS"; version="1.1.0"; sha256="08g674ig8fn2mlwqrhd5lkvy64n9jqvla7nflswpbp4vhjgcmy9k"; depends=[dbscan Distance htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sf sp tidyr VoxR vroom]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="2.2"; sha256="0h9yfiyf8xhvdyzjwgh9s8immnfx6yidz4irn8nyp14ifhq1ad61"; depends=[cluster ExPosition GGally ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; @@ -1607,7 +1613,7 @@ in with self; { FRI = derive2 { name="FRI"; version="1.0"; sha256="17ddbr0hndpr5627n67467787rq8hidi1jn1c3xf7f7qz800jjf5"; depends=[forcats ggplot2 neuralnet RSNNS]; }; FRK = derive2 { name="FRK"; version="2.1.0"; sha256="0lsqd043xyy951yqms5393kshnjcrjq2gckkjyj10q8lp75iyw3m"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.3"; sha256="10ax191r71gny976hgxgs0gz2548sjjaq3hqy7xkzbj2mcmjq41w"; depends=[car dunn_test lmtest plotrix withr]; }; - FSAdata = derive2 { name="FSAdata"; version="0.3.9"; sha256="1ycllz83lmbd93fdrkj0sjg8bygivp60fv768kk0diamjb16xlmq"; depends=[]; }; + FSAdata = derive2 { name="FSAdata"; version="0.4.0"; sha256="0wqviw5achsl9q7v8z8zzbnhq9gryfj793hi61js2z30m5dgjvm7"; depends=[]; }; FSDAM = derive2 { name="FSDAM"; version="2020.11-18"; sha256="09l7zvmbvmbcr5pxizdhs5fn79r6cl4ic0hsz2bazdymsqv3s3nm"; depends=[kyotil reticulate]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSK2R = derive2 { name="FSK2R"; version="0.1.3"; sha256="0hsrg49q42by4i3dywi59wwy5h56fnfdr10s6rk1y9dyliksmj43"; depends=[dplyr purrr R_utils readtext readxl rjson rlang shiny tibble tidyr XML xml2 zip]; }; @@ -1625,11 +1631,12 @@ in with self; { FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.8"; sha256="1m2005yywdh9ir61sdh10ssp1y26d9xgx9rivvilbk9grc9qyjzg"; depends=[FactoMineR ggplot2 rmarkdown]; }; FactoMineR = derive2 { name="FactoMineR"; version="2.6"; sha256="0xcg4vjs5v9k28hhxhkfkks7nvpxpp2cvim00kh67f4pq041c9l1"; depends=[car cluster DT ellipse emmeans flashClust ggplot2 ggrepel lattice leaps MASS multcompView scatterplot3d]; }; FactorAssumptions = derive2 { name="FactorAssumptions"; version="2.0.1"; sha256="0d7dh67r8s0v952palhx9h6bhhlxw9xcjbj7dxsp2hdhwap72s2y"; depends=[MASS psych]; }; - FactorCopula = derive2 { name="FactorCopula"; version="0.8.1"; sha256="1hdmmm9vl1kyg4i4gchl837q6lfga5qfay6wv5z0xn84rmifqnpr"; depends=[abind matlab polycor statmod VineCopula]; }; + FactorCopula = derive2 { name="FactorCopula"; version="0.9.2"; sha256="129ik9fxjhkb4z94nv8xp8qizbypx2v0kbmfvqy0ljifrskbga75"; depends=[abind igraph matlab polycor statmod VineCopula]; }; FactorsR = derive2 { name="FactorsR"; version="1.5"; sha256="1rla44g75hrqalrblr1yaawmyixmivlacn50marqgd9fjh8blgcd"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="2.4"; sha256="0szdpdghaqrfjdx3c9klgww8i09dh69500sls2lyjz6c8gi80vcx"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; + FamEvent = derive2 { name="FamEvent"; version="3.0"; sha256="1f2cfbd799gkva0jyf7x6x37x95nlg1zv85h85irkwh0kfwk55gh"; depends=[cmprsk eha kinship2 MASS pracma survival truncnorm]; }; Families = derive2 { name="Families"; version="1.0.1"; sha256="1ravgcn3jkhfx6q4wqxld2mdmibdm07ywzy3za3hws6a04zgsbvn"; depends=[msm reshape]; }; FamilyRank = derive2 { name="FamilyRank"; version="1.0"; sha256="0v1b3a6rxbbl7xdy977j02x1ni66879x98vg6ngbaqvh7v9vl82x"; depends=[plyr Rcpp RcppArmadillo]; }; FarmSelect = derive2 { name="FarmSelect"; version="1.0.2"; sha256="174rzv9k0hdcfdkv7bisy70rip2iy0bnj3qa54i00wqwjdglgjdn"; depends=[fBasics ncvreg Rcpp RcppArmadillo]; }; @@ -1650,10 +1657,10 @@ in with self; { FateID = derive2 { name="FateID"; version="0.2.2"; sha256="0sgvaqhqkmmkcsl53bm1jlfpzrvzfb5cz8k513nizfsi638vydlm"; depends=[locfit matrixStats pheatmap princurve randomForest RColorBrewer Rtsne som umap]; }; FaultTree = derive2 { name="FaultTree"; version="0.99.5"; sha256="1sg5bidp1wv02xf828g97syh5w6ik5z8ssl7a0hd3ikvh80k4yll"; depends=[Rcpp RcppArmadillo]; }; FeaLect = derive2 { name="FeaLect"; version="1.20"; sha256="1dfi0v313x4a4ck98zlk6yr3nfjrdwr5649x9dx3i7yfkypk2k5c"; depends=[lars rms]; }; - FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.4"; sha256="00yrji3grqgzg8c1hwqq5kb9xgqlnzwymy0b38cwixadc5w5lq8m"; depends=[BH digest magrittr Matrix Rcpp]; }; + FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.5"; sha256="1hfa2p78a7hhn5p0xhsha6pl2aisvkjd791j61s73w99vbysmmpl"; depends=[BH digest magrittr Matrix Rcpp]; }; FeatureImpCluster = derive2 { name="FeatureImpCluster"; version="0.1.5"; sha256="1ifxw6rd870g258fkyyy3mhghxm7486nvgnp3lh5ih2i1v34dgig"; depends=[data_table ggplot2]; }; FeatureTerminatoR = derive2 { name="FeatureTerminatoR"; version="1.0.0"; sha256="036ip8jm4d5ybyqmvrnjqp4hl8gsmd346737ghipnmmyaml9xfs5"; depends=[caret dplyr e1071 ggplot2 lattice randomForest tibble]; }; - FedData = derive2 { name="FedData"; version="3.0.0"; sha256="0qvjm909cj7l2v6rwvvx1kbv2rmca30dahkmsx5w664cqdfdbzgg"; depends=[curl data_table dplyr httr igraph jsonlite lifecycle lubridate magrittr progress purrr raster readr sf sp stringr terra tibble tidyr xml2]; }; + FedData = derive2 { name="FedData"; version="3.0.1"; sha256="1k02icjqghv2hklhqjn63l8phmaxj6vclqcrsm35aa4clax8hhr2"; depends=[curl data_table dplyr httr igraph jsonlite lifecycle lubridate magrittr progress purrr raster readr sf sp stringr terra tibble tidyr xml2]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.5"; sha256="120labhmisw1x1bq8c4bl6l14vayvb9xcm6jsj1awacypgrr2ar2"; depends=[automap gstat mapdata maps proj4 sp]; }; FertBoot = derive2 { name="FertBoot"; version="0.5.0"; sha256="168xfxpb43brfnp6c6b4chhpzb9z0aiqa6fawc8m09an5ggh05jp"; depends=[nls_multstart simpleboot]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.5"; sha256="05n8lvx3cs1ckliaj7ni2rbfcrdl7d0pzf9bkwlyd1779h684cxz"; depends=[data_table devEMF ggplot2 gridExtra plyr png sqldf stringr]; }; @@ -1700,7 +1707,6 @@ in with self; { ForecastTB = derive2 { name="ForecastTB"; version="1.0.1"; sha256="1wqgw4i65ajwj8la8mgv2qqm4ydgk90i6chdkd8h33rlwh8yddc6"; depends=[circlize decomposedPSF forecast ggplot2 gridExtra imputeTestbench PSF RColorBrewer reshape2]; }; ForestDisc = derive2 { name="ForestDisc"; version="0.1.0"; sha256="1mzlrqjxsja51yyxckj4ym1vpfpq30vlhvs8clrg8jv7kz86hdwk"; depends=[moments nloptr randomForest]; }; ForestFit = derive2 { name="ForestFit"; version="1.2.3"; sha256="02qhfp08jcylzjwvdr47gv37rbj8bw6nwlx45ax67429f2g971d2"; depends=[ars pracma]; }; - ForestGapR = derive2 { name="ForestGapR"; version="0.1.6"; sha256="1m3fn7gqwch14nilid9fmxwlm4x9qslr3czb44iwiff9i69csnvk"; depends=[igraph poweRlaw raster rgeos sp spatstat_core spatstat_geom VGAM viridis]; }; ForestTools = derive2 { name="ForestTools"; version="0.2.5"; sha256="0v6m6br54cj0a218ddgkhmqr6ldk29g03pddyqh9krihq37wnjsa"; depends=[APfun doParallel foreach imager plyr progress raster Rcpp rgeos sp]; }; Formula = derive2 { name="Formula"; version="1.2-4"; sha256="1bsw282i5m8rlirbhz7hqvf25zbxschk7yrp152whbzdnmry6w6b"; depends=[]; }; FossilSim = derive2 { name="FossilSim"; version="2.3.1"; sha256="110r1797cbzym2d96h8gchk47kaqf4h6xyma9v1g9jyxnq8zxyiw"; depends=[ape TreeSim]; }; @@ -1727,7 +1733,7 @@ in with self; { FusionLearn = derive2 { name="FusionLearn"; version="0.2.1"; sha256="09mwllnp7sdk7x97s3kv2lka6smpf54svmxw5hv6zlh1hvjnyg50"; depends=[]; }; Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.5"; sha256="02sx32vlvnr0fzw8rf0f6hiikqn7xp1ibpqzxhxwv8yij2qkiyci"; depends=[MASS]; }; - FuzzyClass = derive2 { name="FuzzyClass"; version="0.1.2"; sha256="1kp6zl90fpcjh95bxvaapnjb0k7n7zc2jv5nbqjdxaid86s4x09y"; depends=[caTools doParallel e1071 EnvStats foreach MASS Rdpack rootSolve]; }; + FuzzyClass = derive2 { name="FuzzyClass"; version="0.1.3"; sha256="0vlx0l6zlfghabikssi29n275frb3if6w0qyjldm6ypkgangnzmn"; depends=[caTools doParallel e1071 EnvStats foreach MASS purrr Rdpack rootSolve]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-6"; sha256="0k1cqyswhzp31dq91xigirkqhw3imkx68n4vasyvrgq6fm97dl1n"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyM = derive2 { name="FuzzyM"; version="0.1.0"; sha256="12arx4flgykdkynnj341pgpd85k7xh6491bv9v9da63w6rp0kdm6"; depends=[]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; @@ -1735,7 +1741,7 @@ in with self; { FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; - FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.4.2"; sha256="0pgfx78xyq37ffaxvyxv4fh6p3dfxkgw2xi5p35hjv1hgsmi17s8"; depends=[]; }; + FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.5.0"; sha256="1cryrz18zyp5mzjixhfn4d5207csaadspp3hhbly1k5wwcf6mnyf"; depends=[]; }; FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; @@ -1745,6 +1751,7 @@ in with self; { GACFF = derive2 { name="GACFF"; version="1.0"; sha256="0lhjzb6cj8838dh4423929z7bwpa6cv3dn84rccwi3382vsq9g2c"; depends=[]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; + GAGAs = derive2 { name="GAGAs"; version="0.5.1"; sha256="1qh5cnxjb2fjl442iva4pbln019ycv13vngvlds30ql17cnf679b"; depends=[Rcpp RcppEigen survival]; }; GAIPE = derive2 { name="GAIPE"; version="1.1"; sha256="035x5x8ig85q51bf4qgj5n5qq6clwjp4xk5bf35gswn7qxd13yls"; depends=[]; }; GALLO = derive2 { name="GALLO"; version="1.3"; sha256="0nfzm5cm93m3x0vqmjvhxznj5i913ssn9awpfvk932j829kz6zbc"; depends=[circlize data_table doParallel dplyr DT foreach ggplot2 lattice RColorBrewer rtracklayer stringr unbalhaar webshot]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; @@ -1760,7 +1767,7 @@ in with self; { GB2group = derive2 { name="GB2group"; version="0.3.0"; sha256="1dbyc7izyggfrsq2gj7rwff5qjyy6bx6ip09xvbj73xqczv8fkcd"; depends=[GB2 ineq minpack_lm numDeriv]; }; GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; GCD = derive2 { name="GCD"; version="4.0.7"; sha256="1259z76hajapzzq75fas2sq19r0wapn1ybghdaqdc6dksifdz6fv"; depends=[raster]; }; - GCPBayes = derive2 { name="GCPBayes"; version="3.1.0"; sha256="1239pr1i9q4sfy7az6jc8sh10xil5m2a70v9sm29ll53vsza73jj"; depends=[arm gdata invgamma MASS mvtnorm postpack Rcpp truncnorm usethis wiqid]; }; + GCPBayes = derive2 { name="GCPBayes"; version="4.0.0"; sha256="1ab0vp948dyj9b6yh5gixlqim2xklhy6gsbgi641knzc30paiwj4"; depends=[gdata invgamma MASS mvtnorm postpack truncnorm wiqid]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCSM = derive2 { name="GCSM"; version="0.1.1"; sha256="0apz1wh6nfpg2gyx12xnbdb3hjyrrpwlcrh5khn6cxhxm06q9l95"; depends=[Rcpp RcppArmadillo]; }; GCalcium = derive2 { name="GCalcium"; version="1.0.0"; sha256="0r84qmdsqsgpaqr08imh48mdvy26s2b62hi0hxxwhr9kg7qvj0rd"; depends=[caTools dplyr]; }; @@ -1771,7 +1778,7 @@ in with self; { GDINA = derive2 { name="GDINA"; version="2.9.3"; sha256="0bwg9sfsqs5nsqwhjnbb631fbhj0mx2dc4c185qkym9cjb5lfkm9"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GDPuc = derive2 { name="GDPuc"; version="0.9.2"; sha256="13izxvkl250jw66fkwwnj3s0mgmiwkza9marrrfhwvpx6ja2w37i"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; GDSARM = derive2 { name="GDSARM"; version="0.1.1"; sha256="0id3z450prnrd6rdcv4xaizmjkdhjv8vdbpbnpniaml66kqsadvh"; depends=[lpSolve]; }; - GE = derive2 { name="GE"; version="0.3.1"; sha256="0cwbwngjs2l83a7j2acbl1h2d10vfnw2cils5m108ysx1p93kryb"; depends=[CGE data_tree DiagrammeR]; }; + GE = derive2 { name="GE"; version="0.3.2"; sha256="0fl06kdaxq39xhjb0mm19vq1kkdvl2ab7c2f08sqf2vnlxn8irrz"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; GEInfo = derive2 { name="GEInfo"; version="1.0"; sha256="08ha9w3c64x9ib2fbh4djbhg7y6lykibx93mbm7i3gdvpajqk0jx"; depends=[dplyr glmnet MASS pheatmap rvest]; }; @@ -1779,17 +1786,18 @@ in with self; { GENEAclassify = derive2 { name="GENEAclassify"; version="1.5.3"; sha256="0yqinjamb5qfnkyk9snyqw2kcl8120k6fcpg9y1qz14i6qzin2wq"; depends=[changepoint GENEAread MASS rpart signal]; }; GENEAread = derive2 { name="GENEAread"; version="2.0.9"; sha256="00whn2xqlcdcgmrifng04j2csxynfb1dmj9wkx981ylz13jsnwm9"; depends=[bitops mmap]; }; GENEAsphere = derive2 { name="GENEAsphere"; version="1.5.1"; sha256="1kgj7i9v2yn0b8lvvsf0nc6lg3i2syrcygwa51pcrzp57vv7hxn5"; depends=[GENEAread ggplot2 MASS misc3d rgl]; }; - GENLIB = derive2 { name="GENLIB"; version="1.1.6"; sha256="134j9v0pbljqspbic2phsxgp5y25v4k4jzjdwisxgrcrxi6hg1pn"; depends=[BH bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; - GENMETA = derive2 { name="GENMETA"; version="0.1"; sha256="1mxwqnbg5bvx1qg62xcd62dl81k11l64yckhl3v854asnaczq3pp"; depends=[magic MASS Matrix]; }; + GENLIB = derive2 { name="GENLIB"; version="1.1.7"; sha256="1f4ybng05dsbw6sd7s93y3b8ls0s139zhzpwajzjq4340czshkg2"; depends=[BH bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; + GENMETA = derive2 { name="GENMETA"; version="0.2.0"; sha256="11wlcnj919jws62ngf29gr2p0shdlm917hkz5iwfss1m8gcbfjnl"; depends=[magic MASS Matrix pracma]; }; GEOmap = derive2 { name="GEOmap"; version="2.5-0"; sha256="14qhvgh7jcrfknhihsnsvz6b7dz796v659ksqqmn6c3kva761rc2"; depends=[fields MBA RPMG splancs]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; - GET = derive2 { name="GET"; version="0.3-1"; sha256="1m9p2r0pxa9m9f37pwg03gnaahyrfas9r8xv7bcxh7r5zb6v66yq"; depends=[cluster ggplot2 gridExtra viridisLite]; }; + GET = derive2 { name="GET"; version="0.3-2"; sha256="0n0frlr4nxl62ffh8mir2pwgkp5d1bkazsrff0v6k0amibqknlly"; depends=[cluster ggplot2 gridExtra viridisLite]; }; + GETdesigns = derive2 { name="GETdesigns"; version="1.1.0"; sha256="1rc8vcpfv240qmg3xgqx1rlygw7l3hjkh1napj3pc9j6ffpyyk2a"; depends=[]; }; GEVACO = derive2 { name="GEVACO"; version="1.0.1"; sha256="0zkan4w96g3qc1hgla90mh32b55bk58gax095p4nxrfi46f8w3rf"; depends=[nlme RLRsim]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.6-2"; sha256="0vmm9fhyrk5m0zwy7fpq5j9zinws0gn2saf4j9plqc9gj1gphjn0"; depends=[]; }; GEint = derive2 { name="GEint"; version="1.0"; sha256="0srja3kwm4yjmh1vpzfwrx7ii4s9xj9j88pgcm299dnqxkv59y3r"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; }; GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.3.3"; sha256="1d40fwk367ww544z25jwlx2kdm1gv7y6ijl8vnpi198n7k1hdgpl"; depends=[magic MASS Matrix plotrix plyr shiny shinyjs shinythemes shinyWidgets tippy]; }; - GFDsurv = derive2 { name="GFDsurv"; version="0.1.0"; sha256="1kyazvyz9rgjklh63aq70f3jsv1fpy3ws5wbg4vdah52p8fk35j9"; depends=[gridExtra magic MASS plyr shiny shinyjs shinythemes survival survminer tippy]; }; + GFDsurv = derive2 { name="GFDsurv"; version="0.1.1"; sha256="0qq66f8ddw92m9k9raid89rggla9691xi2sn1w3r7lmwqf6ajsl4"; depends=[gridExtra magic MASS plyr shiny shinyjs shinythemes survival survminer tippy]; }; GFE = derive2 { name="GFE"; version="0.1.0"; sha256="0ywrg23z13kp8ggw4wbm4jvr2rvb6kra7ma0mgfj8xzkrxs6vi6m"; depends=[data_table dplyr TeachingSampling]; }; GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.4"; sha256="0cw8ih9dj86cvks0qcpffzjx8lv6qiwvk3f1wri8zashj8lk9am6"; depends=[cmprsk compound_Cox joint_Cox]; }; GFM = derive2 { name="GFM"; version="1.1.0"; sha256="02k1g2rq32ghd3yivjrfz0wjid1kbkraqrb5cmc8640lv7k8l0xr"; depends=[doSNOW MASS]; }; @@ -1797,7 +1805,7 @@ in with self; { GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.3"; sha256="0h7irlmq283bx1hlqyv8bi228kd6xkc7sdw6nq18v3s7b0a9bhcm"; depends=[ggforce ggplot2 scales]; }; GGIR = derive2 { name="GGIR"; version="2.8-2"; sha256="1njf49ywp8j8vrk66f7q4ndd20102i3xfz843f3nakdnmvl63xkm"; depends=[ActCR data_table doParallel foreach GENEAread GGIRread ineq read_gt3x signal tuneR unisensR zoo]; }; - GGIRread = derive2 { name="GGIRread"; version="0.2.4"; sha256="0pqh7cs1zp0mdmkbbiyarjvijcgsxa0p0c0vmia2gkbb072f2ajw"; depends=[bitops matlab Rcpp tuneR]; }; + GGIRread = derive2 { name="GGIRread"; version="0.2.6"; sha256="10zgdac4vjf63s3d210v6b5lgfwj7an6xfjr4m1rfg7cm5qr2pps"; depends=[bitops matlab Rcpp tuneR]; }; GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; GGMridge = derive2 { name="GGMridge"; version="1.2"; sha256="1bv6k9krkb6mx6p4kx24cgyix1jnpk0257a59i59h7chij9y7nf7"; depends=[MASS mvtnorm]; }; @@ -1840,11 +1848,12 @@ in with self; { GNE = derive2 { name="GNE"; version="0.99-4"; sha256="1ncg9yys5hr2v74h8f5mr2w0iay8zybaxj76qv2cilx8d8qzi6b4"; depends=[alabama BB nleqslv SQUAREM]; }; GNRS = derive2 { name="GNRS"; version="0.3.4"; sha256="0aq6rq5b3jq9yj8hhyxjin38f2008qsix4zm20nyhqx0k0hizql1"; depends=[httr jsonlite RCurl]; }; GNSSseg = derive2 { name="GNSSseg"; version="6.0"; sha256="1zkj98xh63wfyyygg2ahq3m54xlvi3x9sy0rhcn2dlfvbxaxfl4k"; depends=[capushe robustbase]; }; - GOCompare = derive2 { name="GOCompare"; version="1.0.1"; sha256="0ssppp61ssirkcz9wni48n9jm6yv89lzxkgb90njslhb3aa07pbh"; depends=[ape ggplot2 ggrepel igraph stringr vegan]; }; + GOCompare = derive2 { name="GOCompare"; version="1.0.2.1"; sha256="0h4235bs9aszil20bxyscxv2z96rw9gdp87va8bmvj15cg2lfvgv"; depends=[ape ggplot2 ggrepel igraph mathjaxr stringr vegan]; }; GOFShiny = derive2 { name="GOFShiny"; version="0.1.0"; sha256="04m08d9w8qqbql86c18qpnwym7agry8wspfwrnbbyp52h2pn2gxb"; depends=[rhandsontable rmarkdown shiny]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; GOxploreR = derive2 { name="GOxploreR"; version="1.2.6"; sha256="1s2f0ns09vvk6q7fd9fgdw7mcr7qib8mvia1xp9dw4rnq0i6ca1k"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; + GPArotateDF = derive2 { name="GPArotateDF"; version="2022.12-1"; sha256="0j1hi761grjsv6bgvgjigbysk565f3kf8ynf93q7wsx1m38wv4pk"; depends=[GPArotation]; }; GPArotation = derive2 { name="GPArotation"; version="2022.10-2"; sha256="05qrwbfr19mj4f4fxnh7lwvq8ai7xiiyajwhvzsls84w7a7jvxq4"; depends=[]; }; GPBayes = derive2 { name="GPBayes"; version="0.1.0-4"; sha256="1lng6ghbwqdrir17n9x0arch55ynaw37fyj8nbppmfwn3drdndcv"; depends=[Rcpp RcppEigen RcppProgress]; }; GPCERF = derive2 { name="GPCERF"; version="0.1.0"; sha256="054hyprd1g4qlf35imw42n8hizds6qxrp3y64k38j4bh9smkv59f"; depends=[data_table ggplot2 logger MASS Matrix Rcpp RcppArmadillo rlang spatstat_geom xgboost]; }; @@ -1873,8 +1882,9 @@ in with self; { GREMLINS = derive2 { name="GREMLINS"; version="0.2.0"; sha256="0wdqikz6k5d2cxcb347lhy7rj54blgf1m4sjv64zd4nx6c4r0ai8"; depends=[aricode blockmodels igraph mclust pbmcapply R6]; }; GRIDCOPULA = derive2 { name="GRIDCOPULA"; version="1.0.0"; sha256="02xyklc8648z3c3pfd3xshlfn5wpkyglc84dqh8sbpba7017gcvr"; depends=[fields ggplot2 limSolve pracma reshape2 Rsolnp]; }; GRNNs = derive2 { name="GRNNs"; version="0.1.0"; sha256="1c36km6g4fcsvpirlh88fl3zq9pdpdyfilahfx949salj0gnqsn6"; depends=[cvTools rdist scales vegan]; }; - GROAN = derive2 { name="GROAN"; version="1.3.0"; sha256="0gkb1bg5sls2kc6qqy0nigqyk6iq3bfnmj0lf7z7f8nddd33i9ca"; depends=[plyr rrBLUP]; }; + GROAN = derive2 { name="GROAN"; version="1.3.1"; sha256="1g6n00gnz47w06wkx0sha97qxxyhc8n2y8zaagqx7krgzx7lkha3"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.2"; sha256="1g560n81kqf81n1z3s4yxl24r386q21avjknz6msqzp4xhxhr4l6"; depends=[]; }; + GRSxE = derive2 { name="GRSxE"; version="1.0.0"; sha256="1mfsfkfgz12vm99jsln8fimmy852dx20xfnj6ibqrjhjpniv8x5d"; depends=[glmnet ranger]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GSA = derive2 { name="GSA"; version="1.03.2"; sha256="1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p"; depends=[]; }; GSA_UN = derive2 { name="GSA.UN"; version="1.0.0"; sha256="1jj9scv9x32zb24114a4sa43xvjmf3gmq8lnfablldjn7p7yx9cv"; depends=[e1071]; }; @@ -1898,8 +1908,8 @@ in with self; { GVARX = derive2 { name="GVARX"; version="1.3"; sha256="00iqwkshp1i9338x9khh8hyszad6150qb11jlvky5fm488wcw1y3"; depends=[lmtest lubridate sandwich strucchange tsDyn urca vars xts]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; - GWASinlps = derive2 { name="GWASinlps"; version="2.1"; sha256="1vwq1gpq76f0icpzb9l2dl1yg6akr4jcscxfxnirb0zfpnibhn9v"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo]; }; - GWASinspector = derive2 { name="GWASinspector"; version="1.5.7.2"; sha256="0n1k6x38j4sxrsh5mgbcvi4vf6g1mh5xa61k0jaf2pgy2fig5kxr"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr R_utils rmarkdown RSQLite]; }; + GWASinlps = derive2 { name="GWASinlps"; version="2.2"; sha256="1q5gaam554r2wxwsdgxjx6hngs2q850hbrkz8y5248i46pz16pcc"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo survival]; }; + GWASinspector = derive2 { name="GWASinspector"; version="1.6.0"; sha256="0d2r5l7934ksxjqmqa3c7vy0p81vzdqlamlrj3r26cxwpm3icyhw"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; GWEX = derive2 { name="GWEX"; version="1.0.2"; sha256="0iykciifbskcrx1qv4874nxli1sq6nbmlfinq4ksir3p93y7ds87"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Renext]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; @@ -1914,17 +1924,19 @@ in with self; { GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; Gammareg = derive2 { name="Gammareg"; version="3.0"; sha256="1wh5k3nazycki0h094m4d0nnign8yksgnrrnrm3yka1s7mqzv781"; depends=[]; }; GapAnalysis = derive2 { name="GapAnalysis"; version="1.0.2"; sha256="0ky1njrymh102dy7sna2cm5f5gyx4s7k77bnsdal1yndgw7ppqvx"; depends=[data_table fasterize geosphere raster rmarkdown sf sp tmap]; }; + GauPro = derive2 { name="GauPro"; version="0.2.6"; sha256="03xlfwr3wwxcbkicfnrncqnzpsmvwb98vbv3cca9rw13pp449h12"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GaussSuppression = derive2 { name="GaussSuppression"; version="0.5.0"; sha256="1lfywz2iar2nclxkwii7d58b665szlx1xafabqcafb8accxbdmb4"; depends=[Matrix RegSDC SSBtools]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.0.1"; sha256="1j1cwh0p7czy2l4qf6nymqcp8kkfaki0j2rj8p99nqn2vgc3vcax"; depends=[doParallel foreach]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-4"; sha256="1z9h3prlf5r7ks0ys4wy0i5i3giaplqmngsqwxllsy70jjb9s90h"; depends=[exactextractr nlme raster rgeos sf sp spdep]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.2.0"; sha256="1pihqxif2v62hwf5761fshyhigcjmlgbvp2j7immxlsysjfw5xgq"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.2"; sha256="03pgzrj5d3cjhadv4f6an4vm90fj0wxcsi9lx7znrlrjp8qvyjvh"; depends=[]; }; - GenEst = derive2 { name="GenEst"; version="1.4.6"; sha256="0qvxbm8vb39p7s6ajhr9fhkxi9qjw066ghv4vx8wn72vmgs9d4ic"; depends=[corpus DT gsl gtools hellno htmltools htmlwidgets lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; + GenEst = derive2 { name="GenEst"; version="1.4.8"; sha256="0kz9n0af79k9f03jrmqbjbspwn87hpbf0jav3nafg8m3ynvzjb3m"; depends=[corpus DT gsl gtools hellno htmltools lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; GenMarkov = derive2 { name="GenMarkov"; version="0.1.0"; sha256="06bq43ry25g75qxlnrz02s393sv4r5v7m8gw0d96gpmldc76aax1"; depends=[alabama fastDummies Hmisc matrixcalc maxLik nnet]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; GenSA = derive2 { name="GenSA"; version="1.1.7"; sha256="03xqwxm7v7rnihx730a4p65dfwhjh4345r3d78y0qxxplk8d76cx"; depends=[]; }; GenTag = derive2 { name="GenTag"; version="1.0"; sha256="0yirl7n7p7w1dfbbr48v1151qyqm7p9m00vc6jq0s2d6bjdspin9"; depends=[]; }; + GenWin = derive2 { name="GenWin"; version="1.0"; sha256="0fy5ws481xxk16x6wj7z8mwdzy044lqkqkw36xf1yxq18yxcg9xj"; depends=[pspline]; }; GenderInfer = derive2 { name="GenderInfer"; version="0.1.0"; sha256="1bdihxxwmp8ffb5blc8hkxnxh2z72vkq1sjak25njq8b1kwnazvn"; depends=[binom ggplot2]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.5"; sha256="08pr8xgcznm04c4lhvzv2qnzij5vj7pjzyj9pr1pqpmc977h8dvg"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0.1"; sha256="04fmnlj42m9ahq1504pymhq930azr8a5lyggc3bl5awqv1agpzf6"; depends=[]; }; @@ -1932,21 +1944,19 @@ in with self; { GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.2.0"; sha256="0xgxmfcpx3mnmp5hxdy5wiihj693qlksv6jxfb9ba4dy2glzdacf"; depends=[CVST kernlab mgcv xgboost]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; - GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.4"; sha256="1hlq7q3pq7vh2jba82rwm6lrxsv8nr7xyp6fji78ar4rlcqi071i"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; + GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.5"; sha256="0rdqf9idrgkl7b1pz0ys7a4j73jkz748rnk23v388vl7948zvxsa"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; GeneralizedWendland = derive2 { name="GeneralizedWendland"; version="0.5-2"; sha256="04f52ilvijjm740vciys4vhcsxj9j10p7y4pphqawh4yvdc6fanv"; depends=[BH fields Matrix optimParallel Rcpp RcppEigen spam spam64]; }; GenericML = derive2 { name="GenericML"; version="0.2.2"; sha256="1r2jl3say11by21ja7m6m55yzmgrdmp4nlanvh8h4cm8v37bzql7"; depends=[abind ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.7"; sha256="14qnabg1pj8sg2bvd3k4m467bh1q2zfjr0ljxn1ny031sqwis4cy"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; }; - GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.5.9"; sha256="09l87wf78bj49cdh7r3x81hn15c4pihxih8l59xxrpgdhp69268c"; depends=[data_table snpStats]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoFIS = derive2 { name="GeoFIS"; version="1.0.4"; sha256="095lwn9kldhs8nhpp0b6fzhwn5b8ar8511b4144xjks70f7kg7ym"; depends=[BH data_tree FisPro foreach nnls R6 Rcpp Rdpack rgeos sp]; }; - GeoModels = derive2 { name="GeoModels"; version="1.0.3"; sha256="09gj4nmnvvzq36gch6jbhqjhz1fnl2hrymmcacpq2zch7xrp5ngl"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn spam ucminf VGAM zipfR]; }; + GeoModels = derive2 { name="GeoModels"; version="1.0.5"; sha256="1aac0srxva1pyqriwk7dykx2nh05bnagi2nm1vhvqwb2y24lsk42"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn spam ucminf VGAM zipfR]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; - GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.1.1.992"; sha256="0xzz5sg9ywmpwym50hbvb1z7f8wwbbr4shiir8kj4mwf22snsk6d"; depends=[cqn data_table dplyr magrittr plyr topconfects]; }; GeoWeightedModel = derive2 { name="GeoWeightedModel"; version="1.0.2"; sha256="0nff8whj5306mbi668y3i31sfbdslyd7cdm6rxafxhii643bm93a"; depends=[beepr cartography dplyr DT GWmodel raster readxl shiny shinyalert shinyBS shinybusy shinydashboard shinyjs shinyWidgets sp spdep]; }; GeodRegr = derive2 { name="GeodRegr"; version="0.2.0"; sha256="029yclgi4np000yh42j68v32m32lq2hmkh94q33hh1qkx8rilfa7"; depends=[MASS zipfR]; }; GeodesiCL = derive2 { name="GeodesiCL"; version="1.0.0"; sha256="1i3i6vlh3nnb7z6qzh2cd6cqka78bfdly952x5ryl7cb2590a4pc"; depends=[dplyr htmltools leaflet leafpop magrittr mapview profvis readr rgdal sp tibble]; }; @@ -1956,7 +1966,7 @@ in with self; { GetDFPData = derive2 { name="GetDFPData"; version="1.6"; sha256="1yxf1i5bipz16pbydl6qxlalh2zpdiigbxd1qczbjc1z78bl5727"; depends=[crayon curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; GetDFPData2 = derive2 { name="GetDFPData2"; version="0.6.2"; sha256="1gn79q9zlx73mmy8q2sy8ah7bvhdns6z4ayhihnn090ch8v0pzdg"; depends=[dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; GetFREData = derive2 { name="GetFREData"; version="0.8.1"; sha256="15rca6pfsx5hcl1lnz49904b2ps0312mwjv8d4f0g76jhkvqfvss"; depends=[dplyr GetDFPData2 lubridate magrittr purrr readr rvest stringr XML xml2]; }; - GetLattesData = derive2 { name="GetLattesData"; version="1.4.1"; sha256="0bfvkq5i8b0qz98c5ycv5v1sjp0jvv6la7bl3di6q7c3651nh7nl"; depends=[curl dplyr readr stringdist stringr XML]; }; + GetLattesData = derive2 { name="GetLattesData"; version="1.4.2"; sha256="13g54m19lw9nw1a8f45fysxzgf66g94mrgvyqrhx6mfdw6lkig72"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="0.1.0"; sha256="1g1as4m853ab1wp57rzqm0552g0vm7kxzypibv0xywc85084pnmc"; depends=[dplyr jsonlite memoise purrr readr scales stringr]; }; GetTDData = derive2 { name="GetTDData"; version="1.5.1"; sha256="0w77bc03k6qdpx1c87rdmnz976q9a5n84bav5xv78rg7yw7q5ksy"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; @@ -1973,11 +1983,9 @@ in with self; { GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; GlarmaVarSel = derive2 { name="GlarmaVarSel"; version="1.0"; sha256="080v2qckihhacclxi2zscslbwbc6179pc7g02lyqaicf9wrsr8ff"; depends=[ggplot2 glmnet Matrix]; }; GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.5"; sha256="114mhhpv7phvrzvzar4s1a9032iyhcvixjx4h7b5vd1p23m9sayz"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS statmod stringr tweedie]; }; - GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.2"; sha256="0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"; depends=[]; }; - GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.7"; sha256="0m9fp54y4m1xxjqphpnxhw2hspzdca9qc9l60znpnynyj5m6cy2k"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; - Gmisc = derive2 { name="Gmisc"; version="3.0.0"; sha256="051bcp15xpxpdq2r2d29wgm49c0n5r0vikwgzciclxs64j1a57ip"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; + Gmisc = derive2 { name="Gmisc"; version="3.0.1"; sha256="05g7hdqnp8bjyn7lblnfnl9xjcrbbg6l06sackm38ilyba1hzy9g"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; GmptzCurve = derive2 { name="GmptzCurve"; version="0.1.0"; sha256="00n28difj8qs3i539fsd2x07qakyjxf77l8rq5fy07h4f4cpyd0x"; depends=[]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; GofCens = derive2 { name="GofCens"; version="0.92"; sha256="09qy8rsgywdlq04kn6dzdzahhminnx39ih9i84399kn2pnr9vlzi"; depends=[actuar fitdistrplus ggplot2 gridExtra survival survsim]; }; @@ -1993,15 +2001,16 @@ in with self; { GrapheR = derive2 { name="GrapheR"; version="1.9-86-3"; sha256="0wpq7w4lclkzj9ffmqwk2qp5r6kwggh7by47lvhmai4j8g2ha56c"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0.1"; sha256="1gdjx9dazrff2nj16044b7vr7jwddf5cj0iwnlhan46fnibsfwjf"; depends=[Matrix]; }; GreedyEPL = derive2 { name="GreedyEPL"; version="1.2"; sha256="19bgrgzb7jdqpljcbhr3d98y331k1b8fbwgcipak6zkhk2vr6vqz"; depends=[Rcpp RcppArmadillo]; }; - GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.4"; sha256="0j2grrnd4yn4d1ly62dzqq0y7l7mh3lpnlfpf5n41a9w489m03hw"; depends=[checkmate GreedyExperimentalDesignJARs kernlab nbpMatching Rcpp rJava survey]; }; + GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.5.5"; sha256="13xdynx28hx06gl0wjzxzbjh8q4chmvpma059lr46j3vzhwhzwik"; depends=[checkmate kernlab nbpMatching Rcpp rJava stringi stringr survey]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; - Greg = derive2 { name="Greg"; version="2.0.0"; sha256="0vqzjznwfzis5nylv889f06zhi4mb9mhd108ljgn8xlbcmkgmz1n"; depends=[broom dplyr Epi forestplot glue Gmisc Hmisc htmlTable knitr nlme purrr rlang rms sandwich stringr tibble tidyr tidyselect]; }; + Greg = derive2 { name="Greg"; version="2.0.1"; sha256="1c6bplnw7baya2jgqbhwl5rbd8mjrzhq9k8ljd0hwp1z4cxq5m4c"; depends=[broom dplyr Epi forestplot glue Gmisc Hmisc htmlTable knitr nlme purrr rlang rms sandwich stringr tibble tidyr tidyselect]; }; GreyModel = derive2 { name="GreyModel"; version="0.1.0"; sha256="0vxl4kgihcyl96qiz6sz5icznaa1jpsqqbn1irwmzyngwsh1qvzw"; depends=[]; }; - Greymodels = derive2 { name="Greymodels"; version="1.0"; sha256="1libv79qvh925ar8pyd9k18xcyvwbksr5gmlsbwin3z5q765ksgx"; depends=[cmna dplyr expm ggplot2 Metrics particle_swarm_optimisation plotly readxl scales shiny shinydashboard shinyWidgets]; }; + Greymodels = derive2 { name="Greymodels"; version="2.0.1"; sha256="0gv4kqgn10l3pknx7w26yas1h70gsb2h8a82w2ykxs134xl4vpll"; depends=[cmna dplyr expm ggplot2 Metrics particle_swarm_optimisation plotly readxl scales shiny shinydashboard shinyWidgets]; }; GridOnClusters = derive2 { name="GridOnClusters"; version="0.1.0"; sha256="11jir34jdq2kkkgm0rsdn2ivy4r1pkzj0681hxzy9v388lb3icym"; depends=[Ckmeans_1d_dp cluster dqrng fossil mclust plotrix Rcpp Rdpack]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; GroupBN = derive2 { name="GroupBN"; version="1.2.0"; sha256="0x41x7npaawnh6nxh4d4vmv2zwzc6c5ijrhh6fdpwzl4p75qlh1x"; depends=[arules bnlearn ClustOfVar magrittr MLmetrics PCAmixdata plyr PRROC rlist stringr visNetwork zoo]; }; GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; }; + GroupSeq = derive2 { name="GroupSeq"; version="1.4.2"; sha256="01207wc0z9z7m38lnmaf4hml6nva5bcld52clpr2dy9pfcd1x1pd"; depends=[mvtnorm tcltk2]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; }; GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; @@ -2012,10 +2021,10 @@ in with self; { HACSim = derive2 { name="HACSim"; version="1.0.6-1"; sha256="0hdczpn1x6zcxya8qlp82fzzpli3z2kfvynk5sqk97h1d55d27i4"; depends=[ape data_table matrixStats pegas Rcpp RcppArmadillo shiny]; }; HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.2"; sha256="1rw0sav1xrw5sraah3yhw5ypyf99pi9h323nf02qidqfzr9xb214"; depends=[fBasics maps MASS]; }; - HBV_IANIGLA = derive2 { name="HBV.IANIGLA"; version="0.2.1"; sha256="08876xg44md619m8cj1xb34g8xyrp8231nh5z0q6dzggdyfvicir"; depends=[Rcpp]; }; + HBV_IANIGLA = derive2 { name="HBV.IANIGLA"; version="0.2.6"; sha256="1ngvw17k4i4cxdr59fsbm437fn1wqxjz7zn1l6aciygy3rlcncw9"; depends=[Rcpp]; }; HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; HCT = derive2 { name="HCT"; version="0.1.3"; sha256="18k6p9y3vl39mxbvdjanyj3w74jqy2rym6rdbfrx5crvqm9k8hcp"; depends=[rstan]; }; - HCTDesign = derive2 { name="HCTDesign"; version="0.7.1"; sha256="0gwj4z2qwxqzx8b3hnb4bfg1pm78n9g4j5x8gis1rcfrk68sl7d5"; depends=[diversitree flexsurv mvtnorm Rdpack survival]; }; + HCTDesign = derive2 { name="HCTDesign"; version="0.7.2"; sha256="1nncyyw1dlbdl9f1pncwa9xdqrd7w2aw4ghnf01vwyq0m7pj90l1"; depends=[crayon diversitree flexsurv mvtnorm Rdpack survival]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCV = derive2 { name="HCV"; version="1.2.0"; sha256="00ry36w2v4h3vkf2jq3djcma23xflr7fx7icy2vzwk9ffnmzvpxd"; depends=[BLSM cluster geometry M3C MASS Matrix rgeos sp]; }; HDBRR = derive2 { name="HDBRR"; version="1.1.4"; sha256="03jl1m099z6gj2ipi7rnjnrd2rmk4zs54332rwlqyf40dv7ndbz1"; depends=[bigstatsr MASS numDeriv]; }; @@ -2023,18 +2032,18 @@ in with self; { HDCurves = derive2 { name="HDCurves"; version="0.1.1"; sha256="1i4axgrm718wm9azrmdwwfysp9lfhn07kr1vgs0dnac1zaf5qzcs"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; HDGLM = derive2 { name="HDGLM"; version="0.1"; sha256="0a5lnh3780lsczj8339sp97c5y64a2gsdf77i56fvpxpphq0dnf8"; depends=[]; }; - HDInterval = derive2 { name="HDInterval"; version="0.2.2"; sha256="1vb5fn9zfig0jqs3mvkpik4wvrndj4qmxqx8rg0iv8nvqc4fnzh4"; depends=[]; }; + HDInterval = derive2 { name="HDInterval"; version="0.2.4"; sha256="1xlljhzd30mi7pic7q55h7hv0bccxfc2g32piv8jx830svnz01xv"; depends=[]; }; HDLSSkST = derive2 { name="HDLSSkST"; version="2.1.0"; sha256="19snvpgiq8kxzqv6yimzn7nfxkch2xkm0sk41m7g4xwr412dn49j"; depends=[Rcpp]; }; HDMT = derive2 { name="HDMT"; version="1.0.5"; sha256="11wr7n6gj75k3a339h9hm167pni3vdbbnwwblc2b0wfljxsif6hf"; depends=[fdrtool qvalue]; }; HDOMDesign = derive2 { name="HDOMDesign"; version="1.0-1"; sha256="1wfq4w73dkkmfwn3n9rwpjlpvm1ak76dv9ymh6zqfls5whdmp59g"; depends=[HadamardR]; }; - HDShOP = derive2 { name="HDShOP"; version="0.1.2"; sha256="0qnxgp7fjinj9c96w724nxvmb2xbihj2wd6ysibr5dk4rvlq16p0"; depends=[Rdpack]; }; + HDShOP = derive2 { name="HDShOP"; version="0.1.3"; sha256="18i17vv71wc0rqfl2i9bcfl1ry3bd61x9nd6g57x37ggjp7i6j5k"; depends=[Rdpack]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.3"; sha256="12aqqzqbapdh3zg2klhqwlhdvg35ayw126x54mj1iwlkmraxq2iv"; depends=[DT fmsb matrixStats pbapply plotrix purrr Rcpp RcppArmadillo rgeos sf sp SpatialNP swfscMisc TeachingDemos]; }; HDStIM = derive2 { name="HDStIM"; version="0.1.0"; sha256="0v43lwszxmka5li6mp10i2c6zq4si5hm2qsb27lib5gq5cxm23r7"; depends=[Boruta broom dplyr ggplot2 ggridges scales tibble tidyr tidyselect uwot]; }; HDTSA = derive2 { name="HDTSA"; version="1.0.1"; sha256="09b3jz552v3hmnhi6ag0dhc7nr5gdc688mcf3n9q8qzvc3l6dglc"; depends=[clime Rcpp RcppEigen sandwich]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; HDclust = derive2 { name="HDclust"; version="1.0.3"; sha256="18l4qp261gj3kscfxs3s03kmb9y5ml31vnpgpm1iy125bks4mr2y"; depends=[Rcpp RcppProgress Rtsne]; }; HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; - HDiR = derive2 { name="HDiR"; version="1.1.2"; sha256="0hkpc5sap1xvl8difmivharfbxh6vzimh9642d9l48kmp7i1g9hb"; depends=[circular Directional movMF NPCirc rgl]; }; + HDiR = derive2 { name="HDiR"; version="1.1.3"; sha256="1qwd3y9645m8v2gdrb4xjpq86ixs9rgrw7iv3m5lm7nnf87qm350"; depends=[circular Directional movMF NPCirc rgl]; }; HDoutliers = derive2 { name="HDoutliers"; version="1.0.4"; sha256="0vc3g36cghs2ln8a3pb344b3vw1jpz9r8ld77ldd898vg9rhkq2m"; depends=[FactoMineR FNN mclust]; }; HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.2"; sha256="0m8xg6fkn81ni1npfadhv2b2zy7nazg46217hr3xw9y53d1a90gk"; depends=[]; }; @@ -2053,7 +2062,7 @@ in with self; { HLMdiag = derive2 { name="HLMdiag"; version="0.5.0"; sha256="0yy0qf9iw5gr40vlmm697rvvvgp077f08fialx3ijn0vfpsjbl2v"; depends=[diagonals dplyr ggplot2 ggrepel janitor magrittr MASS Matrix mgcv plyr purrr Rcpp RcppArmadillo reshape2 rlang stringr tibble tidyselect]; }; HLSM = derive2 { name="HLSM"; version="0.9.0"; sha256="1nvjgv8lbqpig9snnxm3k1qs1r7bf43gw7a3prj9l3kmqdd0i4j3"; depends=[abind coda igraph MASS]; }; HMB = derive2 { name="HMB"; version="1.1"; sha256="19z3d0b98fyjcnbxh3g6h2g927nv0408sbxjlzalrjlw9mbpzd2b"; depends=[Rcpp RcppArmadillo]; }; - HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.18"; sha256="1npl0q75vfb7wi4fi6mn2grxswd0n612gxldggwkyz35s3fc4hbk"; depends=[httr rvest XML]; }; + HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.19"; sha256="0wvlbgi95wibl40xhib0jlnxiddwhjv9v9qljxcg1bh7b76y7al5"; depends=[dplyr httr janitor lubridate readr rlang rvest stringr tidyr XML]; }; HMM = derive2 { name="HMM"; version="1.0.1"; sha256="03b548bnwqpnd7zypb4gvy9chyi5li2hp99a9vrh4qszxg2ihas7"; depends=[]; }; HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.2"; sha256="0msin7rq3npz221mvrw3zcs6bwz439six99iblx5p3hkp1n1ljf3"; depends=[Rcpp RcppArmadillo Rdpack]; }; HMMcopula = derive2 { name="HMMcopula"; version="1.0.4"; sha256="1gmvav02r3miaq4jx05qjcgzw5qv6w1j77vck5gpps8p38zcp34m"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; @@ -2077,9 +2086,10 @@ in with self; { HSPOR = derive2 { name="HSPOR"; version="1.1.9"; sha256="06lr8l71y5fcqcnmgq7cgiab1pcc98wnqzndbxcbikbh33cx7nxv"; depends=[corpcor npregfast]; }; HTLR = derive2 { name="HTLR"; version="0.4-4"; sha256="0mi03r9izipvmla5pm0s42vm85ishr3bb8pjdw906s4q7lkxjivz"; depends=[BCBCSF glmnet magrittr Rcpp RcppArmadillo]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.8"; sha256="1jfhcyibvxqc96sig81a2fj2gplmwxm5h000xlihkbjk7k9fdsrz"; depends=[R2HTML]; }; - HTRX = derive2 { name="HTRX"; version="1.0.7"; sha256="0ydzakwz1cy96z0fg29snxdwcn5czsvgxk2p1al9fh51llqrpbvb"; depends=[caret fastglm]; }; + HTRX = derive2 { name="HTRX"; version="1.1.0"; sha256="0hi52vamlhr81v6q9dk8gs199j6bzx0j9336nx97wzbxz2swkrbh"; depends=[caret fastglm glmnet]; }; HTSCluster = derive2 { name="HTSCluster"; version="2.0.10"; sha256="0scn4fsfmlkzxibfhsh6krm2cl9c8hsmyjgn48k9dyjf0ylyxg9n"; depends=[capushe edgeR plotrix]; }; HTSSIP = derive2 { name="HTSSIP"; version="1.4.1"; sha256="1j2f6f3i4di4bvsk44gxz0narg45ld2rahfn23wpgni5bszy0vb3"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; + HTT = derive2 { name="HTT"; version="0.1.1"; sha256="14a96p8vhb6acsjic66nsc9llvxyqd0ry1yccsjlxw12mami0vs0"; depends=[ggplot2 ggraph igraph Rcpp]; }; HUM = derive2 { name="HUM"; version="2.0"; sha256="06jx3f2zb52gjp05bq3zmgjkyiaa2j9v0biq23gg88gplpign6jw"; depends=[gtools Rcpp rgl]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HYPEtools = derive2 { name="HYPEtools"; version="1.1.0"; sha256="1jjcjvr2yamvxwgyvypzh54s4q8nkra565gmq00cbrkff41356iv"; depends=[clipr data_table dplyr ggplot2 ggpubr hydroGOF ncdf4 patchwork pbapply purrr rlang sf stringr tidyr tidyselect]; }; @@ -2094,11 +2104,12 @@ in with self; { HazardDiff = derive2 { name="HazardDiff"; version="0.1.0"; sha256="048lvhb4545a487kyknf5b5v8q3a9nsipbh0ii2k3pcc5vfql1h4"; depends=[ahaz Rdpack rootSolve survival]; }; HeckmanEM = derive2 { name="HeckmanEM"; version="0.1.3"; sha256="06fa77lc42dkimn3h5lcxbp92myydsj91j0sskh0k4igwazxdrk6"; depends=[MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; HellCor = derive2 { name="HellCor"; version="1.3"; sha256="1bzc2ipm7vw7s849d43lcs0xrk2rs67h223dn9kahqg152mmknza"; depends=[energy FNN orthopolynom]; }; - HelpersMG = derive2 { name="HelpersMG"; version="5.7"; sha256="1l0hy417r54ljk9mwgx8zzx95v4gvd5s6yhwy5fx7p44lidnanvr"; depends=[coda ggplot2 MASS Matrix rlang]; }; + HelpersMG = derive2 { name="HelpersMG"; version="5.8"; sha256="1ijibkb48qggvj51kyn5fnmq903pyf0w1ambvc5ksx199774ccf4"; depends=[coda ggplot2 MASS Matrix rlang]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.2"; sha256="0jzf3pq43lllxvvmf0rqzxz9fx6931mgb0ipminlw1iakz8wa6w3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HeterFunctionalData = derive2 { name="HeterFunctionalData"; version="0.1.0"; sha256="0qrfmxwrxn0rd2ncy3afhraf7m0010nf9739jkj19h1j5vksi9n1"; depends=[]; }; HeteroGGM = derive2 { name="HeteroGGM"; version="0.1.0"; sha256="0cfzqhbnsy2254m1n6vbpcxlmiqw7cs26v81f5wyawlyyvdydmxi"; depends=[igraph MASS Matrix]; }; HextractoR = derive2 { name="HextractoR"; version="1.4"; sha256="1wp7n92wgrjyklq159ymrw8y5ads6lhj2fcz54rzdnccdyx5naxi"; depends=[doParallel foreach seqinr]; }; + HhP = derive2 { name="HhP"; version="1.0.0"; sha256="0rmvw52a7a75gcwsyv30wvxrb9ykhg4ji3pj2jhgbzjqdc4s9xzw"; depends=[fmrs MASS Matrix]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.4"; sha256="1imz7zfax74aakzk8457jww9r66qxpr2ncyvjj0y5paxdn76lnnq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; HiClimR = derive2 { name="HiClimR"; version="2.2.1"; sha256="11aip68cjyy70xr0la1apk6gbkabg8vnc3s5cbydyz7yl4v80nn8"; depends=[ncdf4]; }; HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; @@ -2113,9 +2124,10 @@ in with self; { HistData = derive2 { name="HistData"; version="0.8-7"; sha256="0cs231w4x8sw2dwy04xwiw01rr2brfz9smwmplw5g1jv1d7afnlj"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.63"; sha256="1vi24k23a017czfy9kihmq4s1dywzm274dyhyp1imx94afsnmhc3"; depends=[jpeg plyr png RColorBrewer rgl]; }; - Hmisc = derive2 { name="Hmisc"; version="4.7-1"; sha256="0zrfi2mmi6wfl6440iqflzzmkina8dhxia2qsamqw6djd0d5fp9j"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; + Hmisc = derive2 { name="Hmisc"; version="4.7-2"; sha256="0lyacs5q6mdg9lirixl9r2dqs9ljxyn5d53mmb04ci0jam3vk0wc"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-13"; sha256="13gqwjniwxc5lgsj044qjq6ic0ibwvj3mviw4hq31s89m834gvyb"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix matrixStats MCMCpack nnet pracma pROC rlang sp statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.3"; sha256="09dkpzlwkkdn0z8g9fbb7hzxbrrq70x9v1zx254svck2jyk0hx58"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; + HodgesTools = derive2 { name="HodgesTools"; version="1.0.0"; sha256="02i87pd5ah3mmf03878354p8nqh3bgn9cnrl1pnnrb3qw7afj19q"; depends=[data_table dplyr ggplot2 ini magrittr qqman RColorBrewer readr RecordLinkage]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HomomorphicEncryption = derive2 { name="HomomorphicEncryption"; version="0.1.0"; sha256="1agw7s9ccj4hi74scqqs8v65gsavxb5c3217rw0kk9cibq7bma2v"; depends=[polynom]; }; HostSwitch = derive2 { name="HostSwitch"; version="0.1.2"; sha256="0gxln6375li33sl4ampw9d926d4bfd58ls7bgba6baqp87p9wq16"; depends=[checkmate ggplot2 purrr shiny tippy]; }; @@ -2123,7 +2135,7 @@ in with self; { HotellingEllipse = derive2 { name="HotellingEllipse"; version="1.1.0"; sha256="1xvm54iqgdnqjpkmgi4ssgpdz2pap60y9z9whrv2ky3q16mjqycz"; depends=[dplyr FactoMineR ggforce ggplot2 lifecycle magrittr purrr tibble]; }; HuraultMisc = derive2 { name="HuraultMisc"; version="1.1.1"; sha256="0bi1y7icrg0f4n9ah9dsrijnfr39bqg3799rz4hccd1b061f0rvj"; depends=[cowplot dplyr ggplot2 HDInterval Hmisc magrittr reshape2 rstan tidyr]; }; HurreconR = derive2 { name="HurreconR"; version="1.0"; sha256="0ga9dzywpn8hm2vq36y3mhsxzvs151xknjjljmcihaczph6yyny4"; depends=[raster rgdal]; }; - HyRiM = derive2 { name="HyRiM"; version="2.0.1"; sha256="09njf2gscn13x5mfd7g76cam9bzbibcnc383gb8h0kks7x16d3p9"; depends=[compare grImport2 orthopolynom purrr Rglpk]; }; + HyRiM = derive2 { name="HyRiM"; version="2.0.2"; sha256="02hb8kl02872xvyhg0k19xavcmhqmf0ddfnxx5nxlpzgzb432csd"; depends=[compare grImport2 polynom purrr Rglpk]; }; HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.2"; sha256="1igshik28xcxrdg116vs9s2yfbz5fik9xvlgfkgai3w9qj0x1h5q"; depends=[sp]; }; HydroMe = derive2 { name="HydroMe"; version="2.0-1"; sha256="1pzf3z3f2xqmj7ixdg01k8552l4vz7yaf2mb53q59ihfhlbqchni"; depends=[]; }; @@ -2141,7 +2153,7 @@ in with self; { IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDsim = derive2 { name="IBDsim"; version="0.9-8"; sha256="1a0xz1khl6cz6ajcn903fcmsv8g7hfdh7684zhk0g6awsgwqdf5q"; depends=[paramlink]; }; IBMPopSim = derive2 { name="IBMPopSim"; version="0.3.1"; sha256="1infqxfwqg6y4d8g3wmi3wg243hqjjmzirm00dhxiav4ps8yrg1q"; depends=[checkmate dplyr ggplot2 purrr Rcpp readr reshape rlang tidyr]; }; - IBrokers = derive2 { name="IBrokers"; version="0.10-1"; sha256="0fvbgcbxmgjnzqrxwc4iq14li9gxkg0bd4yj9wgx4y6akn7xaykw"; depends=[xts zoo]; }; + IBrokers = derive2 { name="IBrokers"; version="0.10-2"; sha256="06pp2fgzbwpk95r0pvaskx44q33mlady8bq5i13c4qc60vkafyag"; depends=[xts zoo]; }; ICAMS = derive2 { name="ICAMS"; version="2.3.10"; sha256="0kkxn45addgl7mg8w4ybna7xaj11dgrwax06l0ml3bnk8h0nrgi5"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges IRanges RColorBrewer stringi zip]; }; ICAOD = derive2 { name="ICAOD"; version="1.0.1"; sha256="07fxh60vsndlvjijjsh1a9l2qkp78sb9nkg5x5mslh209lpjjhw1"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; ICBioMark = derive2 { name="ICBioMark"; version="0.1.4"; sha256="1bvlbczlkjdql98ds5wgmg3j2dxbfm5i4yzq98pdkzaiccg8sx2v"; depends=[dplyr gglasso ggplot2 glmnet latex2exp Matrix matrixStats PRROC purrr]; }; @@ -2163,6 +2175,7 @@ in with self; { ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-0"; sha256="1vj1y4zw8pkghkg4qnmx0yk1yw4zzl9075n5czrna9ckk2p29fmh"; depends=[ICS moments mvtnorm]; }; ICSS = derive2 { name="ICSS"; version="1.1"; sha256="0kmsw8347ka5n0qncx7hqgs153ihkmxbl0wc5kqlb2l42sl6rp8x"; depends=[rstack]; }; ICSShiny = derive2 { name="ICSShiny"; version="0.5"; sha256="0a13vps0mkv5qs6qnl7ar0mdbkbd7i1c6kgwahmkb3id3n9bw0cl"; depends=[DT ICS ICSNP ICSOutlier rrcov shiny simsalapar]; }; + ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.6"; sha256="14rs07594xzvsy62k3qacx5va4k7wq595bnp28vnvrmnqb219kk1"; depends=[ggplot2 polynom]; }; ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; ICcforest = derive2 { name="ICcforest"; version="0.5.1"; sha256="0z511d3drq5flxwvx7kjv3v5yanjhvs5ayvkm996jbiz3k49a12v"; depends=[icenReg ipred partykit survival]; }; @@ -2178,18 +2191,17 @@ in with self; { IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.20"; sha256="0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw"; depends=[lattice]; }; IDSA = derive2 { name="IDSA"; version="2.1"; sha256="0ld2359ksnw9jrjicnqikh5r321mfy2i7vzlhh9phm60k0qf5j98"; depends=[GD ggplot2 kableExtra reshape2]; }; - IDSL_IPA = derive2 { name="IDSL.IPA"; version="2.4"; sha256="1ppbq27nw3xgvpr6lswx3hfx2jkr9rnkcq7hvzpz44x5mk8dc3vw"; depends=[base64enc doParallel foreach ggplot2 gridExtra IDSL_MXP png readxl RNetCDF xml2]; }; - IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.6"; sha256="0mc3p7s9y0nm1xpajq06039bpfsq8qfwk1azicrkd53dsvqbbg45"; depends=[base64enc RNetCDF xml2]; }; + IDSL_IPA = derive2 { name="IDSL.IPA"; version="2.5"; sha256="0zfskczgpw57z94la0n5883mhcmijgknb7sf87cr5wz3kgp19qxd"; depends=[doParallel foreach IDSL_MXP readxl]; }; + IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.7"; sha256="0mh15bcrv3iy033l9ry0j0b0my3xxyn32p52rrfya5ybc0d35c79"; depends=[base64enc xml2]; }; IDSL_SUFA = derive2 { name="IDSL.SUFA"; version="1.1"; sha256="1jfw96xgwd55lpif3wm0xj4ly48rff7ay8g0bx898jd4jyr05idz"; depends=[]; }; - IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.6"; sha256="17x703za3smx2mlb1hvyx8agq8anw0932ssf2l14c09h5n139yh6"; depends=[base64enc doParallel foreach GA ggplot2 gridExtra IDSL_IPA IDSL_MXP readxl RNetCDF xml2]; }; - IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.6"; sha256="09ghkvwywhi0790wql1lrpcgylpx3pxzclw1cbq2lcpmi9lyq0xw"; depends=[base64enc doParallel foreach IDSL_IPA IDSL_MXP IDSL_UFA RcppAlgos readxl RNetCDF xml2]; }; - IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; }; + IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.7"; sha256="0g3q2qih21kv72cl2bpcf84mdc9kg3jqcbpyd4phbsdq9bj519q8"; depends=[doParallel foreach IDSL_IPA readxl]; }; + IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.7"; sha256="09g7zbvimhcfj2zwngsfgjfrrkj3ljfdibwdq4zrwijd0n09g9b3"; depends=[doParallel foreach IDSL_IPA IDSL_UFA RcppAlgos readxl]; }; IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; }; IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.7"; sha256="1yv8lclkb1ws2n4yd3l561lqhp25vlw0f6d073yg04pidr2dpg2a"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; - IFAA = derive2 { name="IFAA"; version="1.0.9"; sha256="0shgcwbcllf9xb97pdpf4mb1xzvh5b2q784qdliac7hzymd2jg62"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; - IFC = derive2 { name="IFC"; version="0.1.7"; sha256="0nw0bkw9qk535q1cdhhb8j8k7hx56m62swlz91d57kqs064j9mkn"; depends=[DT gridExtra jpeg KernSmooth lattice latticeExtra png Rcpp RcppProgress tiff visNetwork xml2]; }; + IFAA = derive2 { name="IFAA"; version="1.1.0"; sha256="0rk9xwpcm2dhf1fxm9adyhmpvf8ibg8m2v4jn5x1alynnzwdm25j"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; + IFC = derive2 { name="IFC"; version="0.1.8"; sha256="16ipdrn423x09wngv86a86gqh19fcpdy9gv2f08asfmyhz8jxkv6"; depends=[DT gridExtra gridGraphics jpeg KernSmooth lattice latticeExtra png Rcpp tiff visNetwork xml2]; }; IFP = derive2 { name="IFP"; version="0.2.4"; sha256="066wz6bjqcvq22gjg2wcmglp798f87rsc8yhm13p0dic3arb5ph6"; depends=[coda haplo_stats]; }; IGCities = derive2 { name="IGCities"; version="0.2.0"; sha256="1564bzvi6vgg9q8s97mxjwklr83vkcv8f526savkhnjxdzi1zmy0"; depends=[]; }; IGST = derive2 { name="IGST"; version="0.1.0"; sha256="12ycrfsgwakaj3k39k1j4ky58wr7a2ibyz6j9cznvjjv6cgz9zg5"; depends=[BootMRMR e1071]; }; @@ -2215,14 +2227,16 @@ in with self; { INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.3"; sha256="1y8qvjm9mrdfxzgxyn5w8798gay0mf4l5lw7s845bcglpyr91q6p"; depends=[colorRamps colorspace data_table dplyr ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 shiny stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; + IOLS = derive2 { name="IOLS"; version="0.1.1"; sha256="196lbdz5154j7s20cn1qb10kx6fk6mvn4dvm4pwrg8d1lj4nznfr"; depends=[boot matlib randomcoloR sandwich stringr]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.5"; sha256="1y0qq6q98lq1srsp1mlb7mr9zn2v4j7gpzim9fgh3xarw6a89i0h"; depends=[dplyr eeptools effsize gmodels gtsummary hash kableExtra lmtest lubridate stringr testthat tidyselect tidyverse zoo]; }; IPDfromKM = derive2 { name="IPDfromKM"; version="0.1.10"; sha256="1pqi6cshiha4gnra25fgpggyi42mn2hg25s9m9mh091rn5km44q0"; depends=[dplyr ggplot2 gridExtra readbitmap survival]; }; IPEC = derive2 { name="IPEC"; version="1.0.3"; sha256="1f5draxw3q26d03h6mcyc8zrd1gmizmc0v01sppdnx8a21878rqz"; depends=[MASS numDeriv]; }; - IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.5.5"; sha256="04mliv44p3nfg898cxlw8k2kdpmfmyglvd2c4waka1qppinhvyap"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; + IPEDS = derive2 { name="IPEDS"; version="0.1.0"; sha256="122v4m3lf5ix10a1ihw1qi8w975iamscaqg2vc5f5k6z8dy9s6ph"; depends=[dplyr readr rlang tidyr]; }; + IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.6.5"; sha256="05klj38wh4bywgahkzwyajsvy2nc1jy86klkbhh7m8hs4qw6kh8r"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; IPLGP = derive2 { name="IPLGP"; version="2.0.3"; sha256="02gjsbd5bfqi575xs3fq01r1cr01gmsxxb58bfj3npgwba8vah21"; depends=[ggplot2 sommer]; }; - IPMbook = derive2 { name="IPMbook"; version="0.1.3"; sha256="0wjzp3l7w4cp0g6c1q84l18pkb0sjjnspidxdv32pn7rqj7wsmcf"; depends=[abind]; }; + IPMbook = derive2 { name="IPMbook"; version="0.1.4"; sha256="152y6d949jjfdfmcjfi0g4p2d02pmqgamxmx5bi3wb352jbjxl08"; depends=[abind]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; IPV = derive2 { name="IPV"; version="1.0.0"; sha256="0h1x2scmwgzl7i0kk4pf7kfq55yiqn065s5r944rrfk09y9g2vgy"; depends=[ggforce ggplot2 lavaan Matrix reshape2 stringr]; }; IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.1"; sha256="07qvdflwmyy0406xkkgja31cggfv4pak2hhnhh8fwggj2zkj9z8n"; depends=[isotone]; }; @@ -2235,13 +2249,13 @@ in with self; { IRTest = derive2 { name="IRTest"; version="0.0.2"; sha256="0fgr7s97mbqy561hwcll11cyx9b5csp0db3iashgs8jbv6q59vgk"; depends=[betafunctions dcurver ggplot2]; }; IRdisplay = derive2 { name="IRdisplay"; version="1.1"; sha256="0awdiv4rr93y8jb1d64sm1iy37ywyniqm7w98yv6qm0zz47h7sw3"; depends=[repr]; }; IRexamples = derive2 { name="IRexamples"; version="0.0.2"; sha256="0a8b5bfjg0f5l2awg1q80xb9i0fbvss466z7j61lzpps83059w9r"; depends=[DisImpact dplyr forcats geodist ggplot2 ggthemes maps RSelenium rstanarm rvest sf survey tidycensus tidygeocoder tigris twang]; }; - IRkernel = derive2 { name="IRkernel"; version="1.3"; sha256="00qrmsywpzw2hfp88020zjaijma7q4hqm9h2cz53rywdjzywnzss"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; + IRkernel = derive2 { name="IRkernel"; version="1.3.1"; sha256="03343ds7sprql1c6h41dibk40rc3225mzxca452ns967fyhy71ii"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; IRon = derive2 { name="IRon"; version="0.1.3"; sha256="0w2impcvy0chsq7y1dxrxmw70aagddnp3i2vcp4y0hnsqn34xzps"; depends=[ggplot2 ggpubr gridExtra Rcpp robustbase scam]; }; ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; ISCO08ConveRsions = derive2 { name="ISCO08ConveRsions"; version="0.1.1"; sha256="1vqg28alpjb1m33hzh4ixfd6f3gzc6l9989gpszvl3ishki05xqf"; depends=[]; }; ISEtools = derive2 { name="ISEtools"; version="3.2.0"; sha256="1dj8q1072j7sn7j9s2mjxm12k6kn5gcqpic8jp2k1f3f7b85dbij"; depends=[coda]; }; ISLR = derive2 { name="ISLR"; version="1.4"; sha256="1hr0r00m9y39gzb4q7nip07mhxmaly12zwmwkisyx641h0vcclbi"; depends=[]; }; - ISLR2 = derive2 { name="ISLR2"; version="1.3-1"; sha256="1hmcpw3nrldxayklp0whlgd5xi1zap8j5g2231i5hp3lsqh6skg6"; depends=[]; }; + ISLR2 = derive2 { name="ISLR2"; version="1.3-2"; sha256="0ljz5lb5srilziyqgka4rcp7d5r4hs6jq9fm3gi1g57agn896vyn"; depends=[]; }; ISM = derive2 { name="ISM"; version="0.1.0"; sha256="0by0w6zgnwcwzbmxx16s8mb1avhc6aiavqp0qkxx6hr70vrgb997"; depends=[rJava xlsx xlsxjars]; }; ISOcodes = derive2 { name="ISOcodes"; version="2022.09.29"; sha256="1rag5mb3bbyxp8n32rhfyy752cy9hh5j80lp9xljj70scvglzbjb"; depends=[]; }; ISOpureR = derive2 { name="ISOpureR"; version="1.1.3"; sha256="1ydhsh3v6n7prrg0dm7hsg8wx1244g791xnz1sjyhljhm31hgwc0"; depends=[futile_logger Rcpp RcppEigen]; }; @@ -2253,7 +2267,7 @@ in with self; { ITRLearn = derive2 { name="ITRLearn"; version="1.0-1"; sha256="03xdbpn3qddcq9krdpnywd3xbzfh2viym2qqx6rcqs7w7bdhhlk6"; depends=[Formula kernlab]; }; ITRSelect = derive2 { name="ITRSelect"; version="1.0-1"; sha256="0llr4hrlbnb728j5rw7vd3r9qlqf571hrldnm72kicis5di2v5di"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; IVYplot = derive2 { name="IVYplot"; version="0.1.0"; sha256="1v739xlim3mcw09cyp4z3cbb25ipkpwm9h378fwy2ycp8lmq32gy"; depends=[plyr]; }; - IceSat2R = derive2 { name="IceSat2R"; version="1.0.3"; sha256="1jlrp2rhxsmcryhcxn124m5m8cak148q5856j4ay1xn0bi4nwqxq"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; + IceSat2R = derive2 { name="IceSat2R"; version="1.0.4"; sha256="1jwy1fwnc2rq3c643maa2h7hrwzq0sm6iv35kil95n3pw7pkgdy3"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; IgAScores = derive2 { name="IgAScores"; version="0.1.2"; sha256="0ckqjbn0xc894dc23gbaqzr6z6rl5h0k8gc5gjhbhwvrc2zlyfsp"; depends=[]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; @@ -2279,7 +2293,6 @@ in with self; { InflectSSP = derive2 { name="InflectSSP"; version="1.4.5"; sha256="02g8w4xfj0xs5fzjmx9vzhd7nn2aici8ircl8y4xr97pq3w7chg6"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; - InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.5"; sha256="1c8mfb82px9z27lc7br514mcbl65q7lfa3df9w3vvnk5g7ljswha"; depends=[boot dplyr survival]; }; Infusion = derive2 { name="Infusion"; version="2.0.0"; sha256="1f4j8qy6ykwp0xi8gbh2f4n6awc8zd5sqxgb7fgjmdw3k7gvs1ah"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy ranger spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; @@ -2297,8 +2310,8 @@ in with self; { InteractionPoweR = derive2 { name="InteractionPoweR"; version="0.2.0"; sha256="09d3v425nj8ph8qsm85z68rixq7k1yppf5v0jmh8klbhn5rikajn"; depends=[chngpt doParallel dplyr foreach ggbeeswarm ggplot2 MASS polynom rlang tidyr]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.3"; sha256="1pjyfg5p6081hng9h6wcmfnlfkcs300c3x9ksdj01587b97ph9s1"; depends=[MASS]; }; InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; - InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.2"; sha256="1iaw4i14l2vp1f163g2q4pwv9cnqrx14ik4s8zw0iha4zwcrc3ja"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; - IntervalQuestionStat = derive2 { name="IntervalQuestionStat"; version="0.1.0"; sha256="17q9y2if60g4546jwkyyi9p2vbkzbzgnf4zwbxw4fz3473w84sls"; depends=[]; }; + InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.3.3"; sha256="1nvi5l0m5118b0m65l52mby34vw05nhp37pl6rba1220a10iasih"; depends=[enviPat plyr Rdisop]; }; + IntervalQuestionStat = derive2 { name="IntervalQuestionStat"; version="0.2.0"; sha256="0pvz5l0pvw8akmvv51c48fx1ppms9iq6s4bwscja8jk56akx2wlq"; depends=[]; }; IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.1"; sha256="0dhsy40wx47g7h8ivriscyvxwl991lfal4nq0j476kamxax0yzbw"; depends=[Rcpp]; }; InvStablePrior = derive2 { name="InvStablePrior"; version="0.1.0"; sha256="1nkbly897prbffdrcrxdvr16f6ipm3if1dg3rm35jcl2ksya6snd"; depends=[fdrtool nimble]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.8"; sha256="01ckyvjl9lxdpkr0v1da4n4lw3b5z1bxlmf0v6ibqly1mhfwybjl"; depends=[glmnet mboost]; }; @@ -2351,7 +2364,7 @@ in with self; { JWileymisc = derive2 { name="JWileymisc"; version="1.3.0"; sha256="1g1mpdxdl27y5ixyfa0fr0zzs0wmvkc2ddnc1bmjyk8xbf2kpd7y"; depends=[data_table digest emmeans extraoperators fst ggplot2 ggpubr ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.3-4"; sha256="1jm63w2jn89pk725x3d9myq010mb0g5ir8vhv29mkiwgrqig6iw1"; depends=[Rcpp]; }; JamendoR = derive2 { name="JamendoR"; version="0.1.1"; sha256="0rrfbci413mqq53p5fyj8rjangdx21iyin6hzqkxyrxrv3n5mfbx"; depends=[dplyr httr jsonlite]; }; - JavaGD = derive2 { name="JavaGD"; version="0.6-4"; sha256="1q48iykjzy22avmx0yy03vv9c7h87qsphg5hsrzfmx5gvck61m06"; depends=[rJava]; }; + JavaGD = derive2 { name="JavaGD"; version="0.6-5"; sha256="1wl31k02x3j9hpf8c8gsmi3k3b3vz9a3y38pz6wa9r41r791rnr1"; depends=[rJava]; }; Jaya = derive2 { name="Jaya"; version="0.1.9"; sha256="0b23l7xp4waxjy1vkk09xaali5axr5900v9hkki4f75wh4gb1l53"; depends=[GA]; }; Jdmbs = derive2 { name="Jdmbs"; version="1.4"; sha256="14wprvxjyx1da1642z11wkzjiyxd5rbpaw1mzq4x6aw53dvh1kgv"; depends=[ggplot2 igraph png]; }; Jmisc = derive2 { name="Jmisc"; version="0.3.1.1"; sha256="0fcch7rg8gn92855smd7h2andr33h9dnccjy12w2bx0px8rnqa0s"; depends=[]; }; @@ -2378,7 +2391,7 @@ in with self; { KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; KMunicate = derive2 { name="KMunicate"; version="0.2.2"; sha256="13lkblm4kn8m4fr6cms8jz1ankxkynics04ajzfrxf6rd6b1xhc8"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; - KODAMA = derive2 { name="KODAMA"; version="2.2"; sha256="0qis85v9g23f17grb1d69l8s7qdlya72fscvqh75k7sly5jlbpix"; depends=[minerva Rcpp RcppArmadillo Rtsne]; }; + KODAMA = derive2 { name="KODAMA"; version="2.3"; sha256="0b8kgr2y623nrw1658s3daja1x25sg4icxcmvlm1fvp0bs2k1w54"; depends=[minerva Rcpp RcppArmadillo Rtsne umap]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; KONPsurv = derive2 { name="KONPsurv"; version="1.0.4"; sha256="08z24w04rzydm86z201crcmyw88sg92yqma5hzj0blj0fyqakwmi"; depends=[Rcpp survival]; }; KPC = derive2 { name="KPC"; version="0.1.2"; sha256="1i9kpr0pib6a8qn7ibmhbay4vxr96ca4kcp5aswmlvcv4ycmw6lx"; depends=[data_table kernlab mlpack proxy RANN]; }; @@ -2396,6 +2409,7 @@ in with self; { Karen = derive2 { name="Karen"; version="1.0"; sha256="1yy80j15lra1zmak3klvqspy9ikhr0v7csl88l9cpbdpp73972by"; depends=[abind expm gaussquad igraph MASS Matrix mvtnorm scales stringr tmvtnorm xtable]; }; KarsTS = derive2 { name="KarsTS"; version="2.4.1"; sha256="1km8321a8vzff26g3x2hvdv5ciyk3fdpcn7g1xqbsx96fzxyd22n"; depends=[circular forecast infotheo mgcv missForest MVN nonlinearTseries plot3D rgl stinepack stlplus tcltk2 tseries tseriesChaos zoo]; }; KbMvtSkew = derive2 { name="KbMvtSkew"; version="1.0.2"; sha256="14g27a0dkj4gpf5l2k96fd3aa21fz8b85lf5a1jxj0qgjmr4kib0"; depends=[]; }; + Kcop = derive2 { name="Kcop"; version="1.0.0"; sha256="0p9ik4z2jc2ib70v8lxxa40f13jbqgq6bb9s7yx335na9l43h1j8"; depends=[copula dplyr gtools orthopolynom]; }; KenSyn = derive2 { name="KenSyn"; version="0.3"; sha256="0s8sq3caxn4swac81196dp52r9lbmxb3ni45yaxh53f5g34slsi8"; depends=[lme4 metafor nlme]; }; Kendall = derive2 { name="Kendall"; version="2.2.1"; sha256="1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m"; depends=[boot]; }; KernSmooth = derive2 { name="KernSmooth"; version="2.23-20"; sha256="0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0"; depends=[]; }; @@ -2404,7 +2418,7 @@ in with self; { Kernelheaping = derive2 { name="Kernelheaping"; version="2.3.0"; sha256="0nd8kbprpm2jrpnqr4xb4z8wklv5js2y3kdpjc2q0ay229hf85j8"; depends=[dplyr fastmatch fitdistrplus GB2 ks magrittr MASS mvtnorm plyr sp sparr]; }; Keyboard = derive2 { name="Keyboard"; version="0.1.3"; sha256="1yfcn1r0zngc1nlj5axqps8an66p1q1qmxwagxq2q15d9qipb5wh"; depends=[ggplot2 Iso Rcpp]; }; KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; - Kmedians = derive2 { name="Kmedians"; version="0.2.0"; sha256="1cyvmlyg44d8pyx3w9z02xkkr4zbqlnlfzix660bqnihs3ss6fhk"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; + Kmedians = derive2 { name="Kmedians"; version="1.2.0"; sha256="10akh0jbnk7hrgqp414p66ddlhs6rdgd1ifjx18wpnfn4c81xcnj"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; @@ -2451,7 +2465,7 @@ in with self; { LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; LEGIT = derive2 { name="LEGIT"; version="1.4.0"; sha256="1ynzm630c3wl8y9j058qgdkss5ngmmylhdw13032v53pss0vwlx3"; depends=[boot doSNOW foreach formula_tools glmnet Hmisc iterators lme4 pROC RColorBrewer snow]; }; - LFApp = derive2 { name="LFApp"; version="1.3"; sha256="0jyzn5k1h629ybx8f09vsnvdmc2qbigaqy6rrcica2sh5if2b4w4"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; + LFApp = derive2 { name="LFApp"; version="1.3.1"; sha256="1vvlf3bwxkyl9gyzswc4wd201pav1q2hfbhwmiic4j4d8azsd2r8"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0.1"; sha256="0ykcd24w71zxb53nch041g7xh83gmg1ia3sysdpn0yzkhm0w7cdl"; depends=[]; }; LFDR_MME = derive2 { name="LFDR.MME"; version="1.0"; sha256="1ln0s3ki37cz1a7r96xn0zqw42im7fcanmz2vjk5zycshb423y22"; depends=[]; }; LFDREmpiricalBayes = derive2 { name="LFDREmpiricalBayes"; version="1.0"; sha256="1imw3djmbpdyplv9dmdzzirp9imk88j0kcxcyfh8yr9ywgd77x6b"; depends=[matrixStats R6]; }; @@ -2498,7 +2512,7 @@ in with self; { LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRTesteR = derive2 { name="LRTesteR"; version="1.0.1"; sha256="1paglzznfcmkz9lk8smnbf84q3gdq1qdkn6p9bgydfj735hghkii"; depends=[rlang statmod]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; - LS2W = derive2 { name="LS2W"; version="1.3.5"; sha256="1lckwdc9jfnx5plslh72inkssnck217lrrqyfpm8zgbd47c3iwa0"; depends=[MASS wavethresh]; }; + LS2W = derive2 { name="LS2W"; version="1.3.6"; sha256="0qsrf9x45z0waiv10fh0a8rw0zyr5raj6l832yhq76vd9gjfpn9i"; depends=[MASS wavethresh]; }; LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-4"; sha256="1y5q5sqzx3iwxdmxf6yz5c3hbw7sihxgr8sibr0v8s9dc6r4a2sf"; depends=[LS2W matrixStats spdep]; }; LSAfun = derive2 { name="LSAfun"; version="0.6.3"; sha256="1jsn3la2qfnvb5z2abx567zp8wrz5122ifgfzibw6fag6s3kl9ym"; depends=[lsa rgl]; }; LSAmitR = derive2 { name="LSAmitR"; version="1.0-3"; sha256="1c2i9wy72v9923ngkipwmc49nc6r3znibadgffzkhci583ib55ym"; depends=[Hmisc lme4]; }; @@ -2514,12 +2528,12 @@ in with self; { LSTS = derive2 { name="LSTS"; version="2.1"; sha256="0pxcw5awm6fr6v1n8gd7yap0y1mba9khwgq27qlv9h2kmrzbr3hp"; depends=[ggplot2 patchwork Rdpack scales]; }; LSVAR = derive2 { name="LSVAR"; version="1.2"; sha256="0lhx9a5l3s2c5isd3fhvxxfdazdxddpkg07hk4rckvhmxln7j1dj"; depends=[igraph mvtnorm pracma]; }; LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; - LSX = derive2 { name="LSX"; version="1.1.3"; sha256="0769g5w67549076b2rck7r46gg4jjdbk024qvcczdigr7cshzq39"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; + LSX = derive2 { name="LSX"; version="1.2.0"; sha256="0imghgi95rdsxjfm4w2i6n8hb5p6y2dsdls0cw56hwlxcv5p2b4l"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; LTASR = derive2 { name="LTASR"; version="0.1.0"; sha256="00l04zljpy9xjg3zpfchlwchmls1vgjfnjzyj016xvv3iivl9w3b"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2.1"; sha256="0sdsdx71mpian7gfw7brkzyjjr7bai7dsdifwnib3jpq9p7w7n84"; depends=[]; }; LTRCforests = derive2 { name="LTRCforests"; version="0.5.5"; sha256="0f0am4wydk4wqiwjzxj2ibdkp5sd47qam4218nn0489knkvas3s7"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; - LUCIDus = derive2 { name="LUCIDus"; version="2.2"; sha256="02dnhswmddyqq5vhmm7wfn76h4i8id2gfcfmc1cpclwyy006srb9"; depends=[boot glasso glmnet jsonlite mclust mix networkD3 nnet progress]; }; + LUCIDus = derive2 { name="LUCIDus"; version="2.2.1"; sha256="00qzx94hwkhm5yszkx1wkj592img5n504ybld272x0wps2bk6snp"; depends=[boot glasso glmnet jsonlite mclust mix networkD3 nnet progress]; }; LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.5.0"; sha256="057pacicjc87g12d44mfqm9vmk10lwsxkil51bp05ixxcqpp4dp1"; depends=[data_table doFuture foreach future iterators parallelly progressr vegperiod]; }; @@ -2530,17 +2544,18 @@ in with self; { LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.3.1"; sha256="1wdfcqjzjc0vwgzv85dfny2r3gsi26wmk85s75bz6hbnwp836sav"; depends=[data_table maptools rgdal rgeos sp spdep tmap]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; Lahman = derive2 { name="Lahman"; version="10.0-1"; sha256="0k8vwcqnkp24n3micwwc63lagpll1np749az2imj4zyyhd8hyq7n"; depends=[dplyr]; }; + LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.5"; sha256="09j4k5r441jpbxv9x6j9j5mlcl7yh2ydhfy55wx614wdlv862jn9"; depends=[plyr rLakeAnalyzer]; }; LambertW = derive2 { name="LambertW"; version="0.6.7-1"; sha256="0cdrq2nrvji8l5blswkffymm7cbjk5jzzx16js2a516cm3gjwxk4"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Landmarking = derive2 { name="Landmarking"; version="1.0.0"; sha256="1gkfv1xcjkbh417kv9dkflfg6agvgrd893v8ams25c2pazfmrmnz"; depends=[dplyr ggplot2 mstate nlme pec prodlim riskRegression survival]; }; Langevin = derive2 { name="Langevin"; version="1.3.1"; sha256="0sg3way9hlk875dfwbby59qm5dxwq7d763a0xjgjwaygpwqc83kz"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.6"; sha256="1dsfp65cg06f25zjzd5ib4qyn1alfhbhpgyvpcw5n6bszn13idap"; depends=[]; }; - LassoBacktracking = derive2 { name="LassoBacktracking"; version="1.0"; sha256="0waz4apjvgwn3ss7mqpndz5m9n7cpmhb3s2ngds04v0amprblddv"; depends=[Matrix Rcpp]; }; + LassoBacktracking = derive2 { name="LassoBacktracking"; version="1.1"; sha256="0xd9y11k1wqmmjb8jjws6ivgcr2x6n7ra27d7mpa3adbvyxzj8dl"; depends=[Matrix Rcpp]; }; LassoGEE = derive2 { name="LassoGEE"; version="1.0"; sha256="1zascnl9hihw0gx2ssmdiv8gcp2672kz9vmsp5vrc2wr9cdcdjz3"; depends=[caret MASS mvtnorm PGEE Rcpp RcppArmadillo SimCorMultRes]; }; LassoNet = derive2 { name="LassoNet"; version="0.8.3"; sha256="02m0g078wg9ka3ck92nrpqrm3msw1m7r8k43brcaiffqwhky99vy"; depends=[Rcpp]; }; LassoSIR = derive2 { name="LassoSIR"; version="0.1.1"; sha256="0ap8335ms12nsc7jvd48244zya54w05wj91qkhb0i63730r508c3"; depends=[glmnet]; }; Laterality = derive2 { name="Laterality"; version="0.9.4"; sha256="1p91xnqmiy232i18masqgly5wcp8zzx8kl8y5v0ra6548np31qmf"; depends=[ade4]; }; - LatticeDesign = derive2 { name="LatticeDesign"; version="2.0-4"; sha256="1spmm9gk09i5dkz6xh4qvmq9r7wd9r8a84xqh8d21678kvl2j3fc"; depends=[]; }; + LatticeDesign = derive2 { name="LatticeDesign"; version="2.0-5"; sha256="06pndvsp3v6gid46hcixh559pcmh2ckr9ss5065nbbrxhg2rf98b"; depends=[]; }; LatticeKrig = derive2 { name="LatticeKrig"; version="8.4"; sha256="153yaf0k4l5za8f13yh2mzjv66bnmi5kp6zaxq9vrisld4vdp58h"; depends=[fields spam]; }; LavaCvxr = derive2 { name="LavaCvxr"; version="1.0.2"; sha256="0gg14y8kngj3r4p4bl3ddnm9dxlklxhvnra5bmbjp1kmjhlg52rn"; depends=[CVXR Lavash pracma]; }; Lavash = derive2 { name="Lavash"; version="1.0"; sha256="0cjl8crk0rdkyzp069fk4k0sapcjmqm3q40z5mgl0i1n59kn4s07"; depends=[glmnet MASS pracma]; }; @@ -2557,8 +2572,7 @@ in with self; { LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.6"; sha256="088w6ks1scmzcq74v7izx8v62d99cp7iia4s02n5dj92nyn24w8x"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; LibOPF = derive2 { name="LibOPF"; version="2.6.1"; sha256="01j3jzhi337dmblcm1d79i4cbp159z6k54ybpyzfasjfnp7qizz6"; depends=[]; }; - LiblineaR = derive2 { name="LiblineaR"; version="2.10-12"; sha256="0r5xbklbfgflwlmkh4i0bsdyqcjs1b4lvxr20f4fhajmkj83gqrs"; depends=[]; }; - LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; + LiblineaR = derive2 { name="LiblineaR"; version="2.10-22"; sha256="1gkp9q99n8cw8s0qamlpjpnlw597fn71dsr05haiyykkqi2l5h5w"; depends=[]; }; Libra = derive2 { name="Libra"; version="1.7"; sha256="1fdxvjv3pwpvfw3hnff09s89b2lv13v3ds91lyg3yi7am820dyzg"; depends=[nnls]; }; LifeHist = derive2 { name="LifeHist"; version="1.0-1"; sha256="0q6l6rva5kxl8yzqa7ni4sdj6p4c61sdsjx8zhckzxb7xlwg2hh0"; depends=[BB Hmisc optimx]; }; LifeInsuranceContracts = derive2 { name="LifeInsuranceContracts"; version="0.0.4"; sha256="02mk8n9rpnbbcgsq7j4b7arm28q1cnwwsswbf7cicahqi1gm3m4z"; depends=[abind dplyr kableExtra lubridate MortalityTables objectProperties openxlsx pander R6 rlang rmarkdown scales stringr tidyr]; }; @@ -2583,12 +2597,12 @@ in with self; { LoBrA = derive2 { name="LoBrA"; version="1.0"; sha256="0rsxkli6xhjwy058skgij2cf3n1lcjsaw3pd51i55l2bpwlrmci6"; depends=[lawstat nlme qpdf RColorBrewer]; }; LocKer = derive2 { name="LocKer"; version="1.1"; sha256="034r6215aigb5hdm2a7cs8qw3nikjdjqnqpn1g27p3lxwfp0n3pr"; depends=[fda Matrix psych]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.3"; sha256="0pi5z3i5hmb8nrqg6nyqrd4hx80xjgc5m3ra1z5r8rvjhw4mz0ik"; depends=[cluster gss lattice Rcpp]; }; - LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.3"; sha256="05vggk5d0w3f9w5217c9hzy5jhwv24p2g8pcj0l6zxkhic01nbrl"; depends=[cluster lattice]; }; + LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.4"; sha256="1slkhgac7izkmp5g203lhzvh991mnqf2qz1m0nd1k89084wvkv7b"; depends=[cluster lattice]; }; Lock5Data = derive2 { name="Lock5Data"; version="3.0.0"; sha256="1407vkcdphy5pb4sgy2ms36vjffiwg2l2753gbszm9wv2m0wrnv4"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; - LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-5"; sha256="0pwq1bdmn040bkwal7xsmjv2asvpyshipbglqb16h2z7yq0vwmv7"; depends=[MASS mclust mvtnorm]; }; + LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-6"; sha256="0ig808d4zqmp4vli25g50s97b1iggrb92ih2s89w6l4vgixmrs92"; depends=[MASS mclust mvtnorm]; }; LogRegEquiv = derive2 { name="LogRegEquiv"; version="0.1.5"; sha256="1j23w3fmd2swk2mzbmsq7hy878cm7cs1li65srjc9m79az9vgr3h"; depends=[]; }; - LogicReg = derive2 { name="LogicReg"; version="1.6.4"; sha256="0517rp55c1h8hwrz3dmnkdc6wzs6ialzdpw50icadcg9q8d0h9i0"; depends=[survival]; }; + LogicReg = derive2 { name="LogicReg"; version="1.6.5"; sha256="052rrjr3d01c3k1ifw639jhifc4qqy3bnmysckb5mfylwfqn00yy"; depends=[survival]; }; LogisticCurveFitting = derive2 { name="LogisticCurveFitting"; version="0.1.0"; sha256="0b564jc3gv6lnzyxmrmbrk9pa8c6v9vbn2q68h9v0d02n58h1kbl"; depends=[]; }; LogisticRCI = derive2 { name="LogisticRCI"; version="1.1"; sha256="158rl8jjmmhnja287i29rjiq309niwbvxmzx4f9lkl83nxn4mzf7"; depends=[]; }; LongCART = derive2 { name="LongCART"; version="3.2"; sha256="05jzl4wb52fa9781pn8a3wqdnpyfrr9fv7h3xfz81xm5bl5d8mf1"; depends=[Formula magic nlme rpart survival survminer]; }; @@ -2608,13 +2622,13 @@ in with self; { M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; MAAPER = derive2 { name="MAAPER"; version="1.1.1"; sha256="05jjfnp1hwg8pk06np6fbdfxi6zn60wzhrkzlh8jkqgwxjhgnvai"; depends=[GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges MASS Rsamtools]; }; MABOUST = derive2 { name="MABOUST"; version="1.0.1"; sha256="044k29nibl5zc32zz2696kbhrz5dafgaikgmjqznsq25p48si453"; depends=[Rcpp RcppArmadillo]; }; - MACER = derive2 { name="MACER"; version="0.2.0"; sha256="1m3p1vkhs9f42xj99gnw66wds7jsrkihg3i1qq3cr94ahlp05b4v"; depends=[ape ggplot2 httr pbapply png rentrez]; }; + MACER = derive2 { name="MACER"; version="0.2.1"; sha256="02qqcaccw671773lp1zva340fd6wqbsx9v0yxy62cbjnyh3k260r"; depends=[ape ggplot2 httr pbapply png rentrez]; }; MADPop = derive2 { name="MADPop"; version="1.1.4"; sha256="0r8c31sjn3ma6fghc0kbq27djha4321jsdrpwvl65qd74ivp305v"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; MAGEE = derive2 { name="MAGEE"; version="1.2.0"; sha256="0xyz4m3b09yxjlzy3j2akwpngbqjqjcbsfkn6hig4wi4lw7szc8a"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.6.2"; sha256="0c2llzjhrv1jn5zna654bjgyq5q0hqwzfv9kda9mfjf20pfc34my"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MAKL = derive2 { name="MAKL"; version="1.0.1"; sha256="0xljmnwl8v3y68xmfm5vbycsa5y5yi0p0n207hg7zjvfaf6gbfhj"; depends=[AUC grplasso]; }; - MALDIquant = derive2 { name="MALDIquant"; version="1.21"; sha256="1y1g3819ss06dry70kfhg2syddw71682qmzkcyppfsma6hhghw87"; depends=[]; }; + MALDIquant = derive2 { name="MALDIquant"; version="1.22"; sha256="05fhr7945m0qxh7f5c4ax9v2k32s4n4v4xc1dm1crk1vbzha40bv"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.13"; sha256="0xxdvfg9h6vl2g2wlxfmrskn8576rd958mn5jblryyqg9xbanlhr"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0-1"; sha256="1gm5w614r66av6bvfiad5964hsr6hb0c03c90ck9lb251bns98wm"; depends=[lattice MALDIquant robustbase signal waveslim]; }; MAMS = derive2 { name="MAMS"; version="2.0.0"; sha256="05pnrxziwsgnhy05fac8smxcm65zxi2dl7lar2jakiamd2hxv3c2"; depends=[future future_apply mvtnorm]; }; @@ -2626,16 +2640,16 @@ in with self; { MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; MARSS = derive2 { name="MARSS"; version="3.11.4"; sha256="10mf1vs51yqqg6s2435j84xbaxvr6wdraha07mqlr2rmprgl5a0r"; depends=[KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; - MARVEL = derive2 { name="MARVEL"; version="1.3.0"; sha256="0016y7nycqpqaxcybgrdicp1q9kw7pbinbi54rja6npcyiz3li86"; depends=[ggplot2 scales]; }; + MARVEL = derive2 { name="MARVEL"; version="1.4.0"; sha256="1zsgj3dbqpfjv2x6xpp75n9jxf04svqffiy9gxlbxkns3clwqz5i"; depends=[ggplot2 Matrix plyr scales]; }; MASS = derive2 { name="MASS"; version="7.3-58.1"; sha256="080l4gqkaw9r4s7b0q9hda489rn24p4ma5xf4g8405qkzgif817p"; depends=[]; }; - MASSExtra = derive2 { name="MASSExtra"; version="1.1.2"; sha256="0jzzm3ahn1iisdp632hcn8lnk6hhh699jqfj6v0164qxd6487xvs"; depends=[demoKde MASS]; }; + MASSExtra = derive2 { name="MASSExtra"; version="1.2.0"; sha256="0mc5zpj2zp1gd8izyiji1hrklc4x3ixvcjxzfcs3bbhzk7qcm2n9"; depends=[demoKde MASS]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="2.0-1"; sha256="1dvidwjw4zgflms5njbd9n85g1gbgfg6hk0fb63q5n65iyxxfmyh"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.3.1"; sha256="0jr08j96agqw4hzdbk9ixdpngh60bd7w47192d0zm3byymcxpb0y"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.7.1"; sha256="0qydfp856qlmiwf3a2vs2dfk203sx8vvzrqn4hga9wi7bxdylk9f"; depends=[]; }; MAVE = derive2 { name="MAVE"; version="1.3.11"; sha256="01n204bxabbm8pcpayy2s0jvhg73r5cv0026lb3vbk0m40z02kcz"; depends=[mda Rcpp RcppArmadillo]; }; MAd = derive2 { name="MAd"; version="0.8-3"; sha256="0br099qzmzvdcx5pzb772dipyb279kgzhx6p2b7g0fp4r4bk7gbd"; depends=[]; }; MAnorm2 = derive2 { name="MAnorm2"; version="1.2.2"; sha256="0bs6x09mm8ln2c7himavm6bskdkxvx7id4dxpg20k4a5hcqpj3ab"; depends=[locfit scales statmod]; }; - MBA = derive2 { name="MBA"; version="0.0-9"; sha256="06kmrdkhwwvr3kd5w8ws6r528hhpvbhixyj98lv36kkwlx14x06g"; depends=[BH]; }; + MBA = derive2 { name="MBA"; version="0.1-0"; sha256="1bw3a8xcbjmhb3mfzblx8kpj3jiag8c95wm5g6xy52xrql2rj0vq"; depends=[BH]; }; MBAnalysis = derive2 { name="MBAnalysis"; version="0.1.0"; sha256="1hgx6lgyjbiq6y5cw720mnavll6mfrarwvhsm7pbr25q1d37jmg8"; depends=[ggplot2 ggrepel]; }; MBC = derive2 { name="MBC"; version="0.10-5"; sha256="0iks5nhk4im7l1dxgwcwi4mlnh271zfq9mrlaklpk38zakzyf2n4"; depends=[energy FNN Matrix]; }; MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; @@ -2669,7 +2683,6 @@ in with self; { MCPtests = derive2 { name="MCPtests"; version="1.0.1"; sha256="1lzlvzw60fb0mllbl0dx8s30zigzbl9shjas629syb9yw55ypxa2"; depends=[doParallel foreach SMR writexl xtable]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; - MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MChtest = derive2 { name="MChtest"; version="1.0-3"; sha256="1b3p6ry8gkvyphakn3504ibl2x8dbhx95saild0mj0iwm3sjyspf"; depends=[]; }; MDBED = derive2 { name="MDBED"; version="1.0.0"; sha256="1r3sizb2mqd4pqjy25krwmsjfkr6cl7lkd8db5jn3hgxx3qh6sgc"; depends=[doParallel foreach ggplot2 lattice orthopolynom psych Rdpack]; }; MDFS = derive2 { name="MDFS"; version="1.3.0"; sha256="0sv6j8arfh4w333y1mp3n65bzi2kz9zrk2wpw80z5vci2489s50d"; depends=[]; }; @@ -2724,9 +2737,9 @@ in with self; { MKLE = derive2 { name="MKLE"; version="1.0.0"; sha256="0pnz99z2ms8j0acnpim0z7n7m0x6rkvzi5dhq8jhx0dnry4mznn0"; depends=[]; }; MKMeans = derive2 { name="MKMeans"; version="2.1"; sha256="1zhas96xvjyphmrs48k3nza1ayv9nfj0c760ifb57p8yk28m0bfy"; depends=[]; }; MKclass = derive2 { name="MKclass"; version="0.3"; sha256="0sw0h99k24418iqvvq247kg5558y9mgashr5amay7gbf2va79v6j"; depends=[]; }; - MKdescr = derive2 { name="MKdescr"; version="0.7"; sha256="056gp5fig8l4wgv3hzphr5q81z1zi6x88abc4kzgg8f1ljpn37xf"; depends=[ggplot2 scales]; }; - MKinfer = derive2 { name="MKinfer"; version="0.7"; sha256="1b1qwz6dwkwh0wc61j7jxkrcf5h97p56vj15zpki13lmaw779swi"; depends=[arrangements boot ggplot2 MKdescr nlme]; }; - MKmisc = derive2 { name="MKmisc"; version="1.8"; sha256="1d94vnj0ffw15gd0xfpz245y0qi7xw61qwsqan3bahskjdwrgdgl"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; + MKdescr = derive2 { name="MKdescr"; version="0.8"; sha256="0y4mg3lg94nvyvj8rns5lffd6qjw1yn6yw8kn03n94rig857amwp"; depends=[ggplot2 scales]; }; + MKinfer = derive2 { name="MKinfer"; version="0.9"; sha256="1n4qj595bi1mykhk7pc9lkgfr6qjk6c23f9iwzc6b7ijgh44a19h"; depends=[arrangements boot exactRankTests ggplot2 MKdescr nlme]; }; + MKmisc = derive2 { name="MKmisc"; version="1.9"; sha256="09kdwsfx5w3q88jbnxbaxzbzyx9fhhphqqaxn5qghhh1z2vpmy93"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; MKomics = derive2 { name="MKomics"; version="0.7"; sha256="0ck8i7ip12bb6wilmwhdrbdmf56ymm3rp6973lr1p4bc2m2kvhif"; depends=[circlize ComplexHeatmap limma RColorBrewer robustbase]; }; MKpower = derive2 { name="MKpower"; version="0.5"; sha256="1yr9yk7x8da2b8hj71v4f5c2nikljbr6ayqp004whdi2bh67v95n"; depends=[coin ggplot2 matrixTests MKdescr MKinfer qqplotr]; }; ML_MSBD = derive2 { name="ML.MSBD"; version="1.2.1"; sha256="1cpwq0vilbyz837d8k8pjipw3cwdsggbs88nwp827s4w2f1m7pap"; depends=[ape foreach]; }; @@ -2735,6 +2748,7 @@ in with self; { MLCM = derive2 { name="MLCM"; version="0.4.3"; sha256="1sz5c3wxvnyxd3bf53i8x2jw591phx2np6c6bj4cqppb98ab83f3"; depends=[]; }; MLDS = derive2 { name="MLDS"; version="0.4.901"; sha256="0zswlng1vksnx1m6ycna2hbqmzzcfpqz1wgy519fr0j87bqxks69"; depends=[MASS]; }; MLDataR = derive2 { name="MLDataR"; version="1.0.1"; sha256="0sbm79hpgxiqnqjyr5n88rhs29lkp17czz9jmhd2d5x97ncpqw9f"; depends=[caret ConfusionTableR dplyr ggplot2 OddsPlotty parsnip ranger recipes rsample varhandle workflows]; }; + MLEce = derive2 { name="MLEce"; version="1.0.1"; sha256="0m5fa2167dyprcc3agmdvfjgd0qvnnqn5y6xqm2w3rmgvilhp24r"; depends=[ggplot2 LaplacesDemon mvtnorm nleqslv reshape sirt]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-7"; sha256="1kdnm5ilfn5fclry3f1d518761hykrqgjhv69kc881r2fpcfa1lv"; depends=[]; }; MLFS = derive2 { name="MLFS"; version="0.4.2"; sha256="0xrc266hz69vpfi2h59lma0wbyi1wfcw4wb3dbjbnqqwsq1hc0dz"; depends=[brnn dplyr magrittr naivebayes pscl ranger reshape2 tidyr tidyselect]; }; MLGL = derive2 { name="MLGL"; version="0.6.7"; sha256="13wg7hdvn1sp207rj0cckc98lfx62nwm4nma9qmvlvgrs7pdqk58"; depends=[FactoMineR fastcluster gglasso MASS Matrix parallelDist]; }; @@ -2773,24 +2787,23 @@ in with self; { MNP = derive2 { name="MNP"; version="3.1-3"; sha256="1kaw8kvmi1m4a7k17l6ikp89fksh6l2f53bz1h3n80da259rbhbi"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.4"; sha256="0g70s7hnmrp4sm8gx49vsijj54y4amlcy6axc4k37k4c9g4sdics"; depends=[cclust class clue cluster]; }; + MOCHA = derive2 { name="MOCHA"; version="0.1.0"; sha256="1cc817p7v9zs8nmbl7461m5hfwg0swb9y8dygljq2gfkvbxjqfb5"; depends=[AnnotationDbi assertthat BiocGenerics biovizBase data_table dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 ggrepel ggridges IRanges magrittr matrixStats MultiAssayExperiment OrganismDbi plyranges qvalue RaggedExperiment rlang S4Vectors scales stringr SummarizedExperiment tidyr wCorr]; }; MODIS = derive2 { name="MODIS"; version="1.2.9"; sha256="1272b0swij6h6xm18vpjzv0n0l47ck391wgik665bjsdky21d3sm"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; }; MODISTools = derive2 { name="MODISTools"; version="1.1.2"; sha256="1br5kpkz3addnndh6740ppkg3xswpdc6fj9x776rswrjmrhazzm7"; depends=[httr jsonlite memoise raster sf]; }; MODIStsp = derive2 { name="MODIStsp"; version="2.0.9"; sha256="143jby0838xaihk37l29hqxqyk2v24qs0f20q3wc6krmz7a2i70w"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; - MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; }; MOFAT = derive2 { name="MOFAT"; version="1.0"; sha256="00b9ss777zr5ysh98yllyicqwgnzccmjf20g7w20zvn2blhs2np0"; depends=[SLHD]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; MOQA = derive2 { name="MOQA"; version="2.0.0"; sha256="17w4iwf38k0r2fiwqr420hkbbz1a3r89sqwnd2yn300zmaz64hpr"; depends=[gplots psych readr]; }; MOSS = derive2 { name="MOSS"; version="0.2.2"; sha256="0gjsyv74hhjknlnplc8157mmypnfy1yjrs400pz0p4744k5c8c7s"; depends=[cluster dbscan Rtsne]; }; MOST = derive2 { name="MOST"; version="0.1.2"; sha256="07y3aw2ldgq4jiz2kk2rkbqd4l298wsa5sq3xs5p21k7g33gxxnv"; depends=[]; }; MOTE = derive2 { name="MOTE"; version="1.0.2"; sha256="17y2l2rmw7fhvknyh5z09i7hd8nhamx12g00rcymp75gqkz9lzc7"; depends=[ez MBESS reshape]; }; - MPBoost = derive2 { name="MPBoost"; version="0.1-4"; sha256="1sr2cxngfm8ykr4cagx7r6fbn5g6rdpxrxzq3sz7g9acy329qzxx"; depends=[BH Rcpp]; }; + MPBoost = derive2 { name="MPBoost"; version="0.1-5"; sha256="13ijn48dg20kz0zwr0f0vp4162dv9hqnmnzzbdp30nhh0bqdbk4k"; depends=[BH Rcpp]; }; MPCI = derive2 { name="MPCI"; version="1.0.7"; sha256="1l55q09lliv0y4q1hc0jgzls47wkmsfag6b4iq5y6wrllr5wq7sa"; depends=[]; }; MPDiR = derive2 { name="MPDiR"; version="0.1-20"; sha256="1mm4mv042jr0n7z5cdaij39zrg2475p83gd3dxq6krz9yq8ii1q3"; depends=[]; }; MPGE = derive2 { name="MPGE"; version="1.0.0"; sha256="10lzkk8fhpxd1z4yp051q3k36fsvddrwssv7nn03r2bkp6q8rpzb"; depends=[car purrr]; }; MPI = derive2 { name="MPI"; version="0.1.0"; sha256="081yhbk3qz5935yz5n1391x3hpj8m0cbj1p81snhb9n8h0agwgv0"; depends=[doParallel dplyr foreach purrr tidyr]; }; MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; MPN = derive2 { name="MPN"; version="0.3.0"; sha256="0rrigkq5bkarncswv8kgvvwd1vrq5cqnb5vypa9d39q2ksqf8j3d"; depends=[]; }; - MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; }; MPS = derive2 { name="MPS"; version="2.3.1"; sha256="08yzynznf33y7y3pf7fayks5hi3cdvzwzn8axg7aky5kvi2bfv22"; depends=[]; }; MPSEM = derive2 { name="MPSEM"; version="0.4-1"; sha256="0cq7vyyif7gxywrj420msscjf1aq427g88x8yvxf3a5a6mqapkr8"; depends=[ape MASS]; }; MPTinR = derive2 { name="MPTinR"; version="1.14.1"; sha256="0jywv5kim3vdfq0dfaxjksq8l2i6ny45rn5ibmb7ximwfjm3syp0"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; @@ -2810,11 +2823,11 @@ in with self; { MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.1"; sha256="01kg6frglrhi55px2hsadjn9dbfz61hwj1q2m6jrm59b4cws0gcb"; depends=[dplyr ggplot2 Matrix]; }; MRmediation = derive2 { name="MRmediation"; version="1.0.1"; sha256="0v0kn6x4fwj35imj1fb2f2024ifb7081z4cwlhjmdxhabcy6xbx7"; depends=[fda MASS]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.4"; sha256="1vh0i9nxqiy3qdnb7z7cn5kpp2jahdmaqpnv7q5650pkswhwmfpc"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; - MSCquartets = derive2 { name="MSCquartets"; version="1.1.1"; sha256="1dv6g860yxhkk6dd0sr0vvnpwb3fbpz7fvqjlcs5kcqisvcv5ya0"; depends=[ape doParallel foreach phangorn RandomFieldsUtils Rdpack zipfR]; }; + MSCquartets = derive2 { name="MSCquartets"; version="1.1.2"; sha256="1q85h3jm2llkm8dpqdxgjxzg7iwlmhx41n3hlk1ybvxw2c0jb3rd"; depends=[ape doParallel foreach phangorn Rdpack zipfR]; }; MSCsimtester = derive2 { name="MSCsimtester"; version="1.0.0"; sha256="0k04fdprwa56vm6n372lipybgq1plhmjbxvp58wqmpgzpnhcxkvd"; depends=[ape kSamples Rdpack]; }; MSEtool = derive2 { name="MSEtool"; version="3.6.0"; sha256="1hwh55fh9rab1hda6a2ks7r2bdwgy16wz4c6jrfa80ifkfki32hi"; depends=[abind dplyr ggplot2 ggrepel gridExtra Rcpp RcppArmadillo snowfall]; }; MSG = derive2 { name="MSG"; version="0.8"; sha256="178209p30fmh3c03w8iakz306h2xswcj4ffxg1s9s8md156rbj7s"; depends=[RColorBrewer]; }; - MSGARCH = derive2 { name="MSGARCH"; version="2.50"; sha256="0gq0n9v2vdsg899bic24hdp72sr39xcmc3iam4h4yx2b8bl7mxdb"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; + MSGARCH = derive2 { name="MSGARCH"; version="2.51"; sha256="1n8v9017p8iw9mai3yqh294v7kyj458a6vj9ma20gzd94nhyhlxh"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGARCHelm = derive2 { name="MSGARCHelm"; version="0.1.0"; sha256="172xpvs98b9ay44ffb8bp9k4zsjzhy92pp7bv3d1j186pqhl13ib"; depends=[forecast MSGARCH nnfor]; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSMwRA = derive2 { name="MSMwRA"; version="1.5"; sha256="062d37h47p3sx65k5jh8n900dfzm1mvi18ikral3ajdhy7x2cif9"; depends=[]; }; @@ -2824,7 +2837,7 @@ in with self; { MSSQL = derive2 { name="MSSQL"; version="1.0.0"; sha256="15glgn2dr1yygxps0mx68435zqc2hi4hvgr4rvgrwyxdnlm5g35y"; depends=[RODBC]; }; MST = derive2 { name="MST"; version="2.2"; sha256="0p833nyq9p0r0hy02f4sy6gv1wm9flj3dxkv73ihy8503r89bbzz"; depends=[Formula MASS partykit survival]; }; MSTest = derive2 { name="MSTest"; version="0.1.0"; sha256="09njnxfj7i3gf91qayabhadzlwszh81pznyir0fqpsns8hzbmk4p"; depends=[foreach GA GenSA lmf nloptr numDeriv pso Rcpp RcppArmadillo rlang]; }; - MSbox = derive2 { name="MSbox"; version="1.4.6"; sha256="1wlfbkjsw2bzznh6fwhfllgnj80zpfab82x43a83k3mjd41rf9f9"; depends=[crayon ggfortify ggplot2 plotly reshape2 stringr xml2]; }; + MSbox = derive2 { name="MSbox"; version="1.4.8"; sha256="1cppzy3kri2zmhyk34scffix28v1bjb0fhk51kb33amg6vz5mnj3"; depends=[crayon stringr xml2]; }; MSclassifR = derive2 { name="MSclassifR"; version="0.3.1"; sha256="14fnq5xyflx9m35lppjdlz89cmwd8dmijn449r222hvpmv68vdhw"; depends=[car caret cp4p dplyr e1071 fuzzyjoin ggplot2 glmnet limma MALDIquant MALDIquantForeign MALDIrppa mclust metap mixOmics mltools nnet performanceEstimation reshape2 statmod UBL VSURF xgboost]; }; MSclust = derive2 { name="MSclust"; version="1.0.2"; sha256="0i88179z6h2lllkbhp5jfwxnamj1n45v3i3cizzqk217ch3nfjwd"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; @@ -2858,12 +2871,12 @@ in with self; { MaOEA = derive2 { name="MaOEA"; version="0.6.2"; sha256="0s8jvp7821mb6xff8xwnh78mhz4qfrbk4g7sp4dfnm2ii7ah9c6b"; depends=[e1071 gtools lhs MASS nnet nsga2R pracma randtoolbox reticulate stringr]; }; MachineShop = derive2 { name="MachineShop"; version="3.6.0"; sha256="1gfwqzfmkv48d5is112qpylmmr3b1jrx8ckf2l6agijmvarf7z21"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; - MagmaClustR = derive2 { name="MagmaClustR"; version="1.0.1"; sha256="0gf0xlsh5wkvbp331z7c55ypfkg9rmmakykbqliswiyrfgbczk9g"; depends=[broom dplyr ggplot2 magrittr mvtnorm Rcpp rlang tibble tidyr tidyselect]; }; MainExistingDatasets = derive2 { name="MainExistingDatasets"; version="1.0.1"; sha256="1828pj76122z1aahrv82il05wy7lz87s8vwn024150cvsqh3lgrj"; depends=[config dplyr DT glue golem htmltools htmlwidgets magrittr openxlsx pkgload processx rlang sf shiny spData tidyr tmap tmaptools]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; MakeYourPalette = derive2 { name="MakeYourPalette"; version="0.1.3"; sha256="0snawchc2rkxglmcg093gik3gwasn4pxqsvz6rm2r1gkbwbazmh4"; depends=[prismatic raster rgdal]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; ManagedCloudProvider = derive2 { name="ManagedCloudProvider"; version="1.0.0"; sha256="0glhx9ylpx2s8mi711gblapw6qnv80nd4wahph65g6ddngvmgv73"; depends=[adagio DockerParallel jsonlite]; }; + MandalaR = derive2 { name="MandalaR"; version="0.1.0"; sha256="13shj6r416cz11qlwrha468gx1y76vx28xyhap3k0c0b2jxn699b"; depends=[ggplot2]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; ManifoldOptim = derive2 { name="ManifoldOptim"; version="1.0.1"; sha256="0vp064ayniwqc8wck9n5y7s5y22x2jq55n8l5q4vjb8q7idvy6xd"; depends=[Rcpp RcppArmadillo]; }; ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; }; @@ -2882,11 +2895,11 @@ in with self; { MasterBayes = derive2 { name="MasterBayes"; version="2.58"; sha256="0s6zry5nhwg3zbfgqd6zdrys0irf6336gfcba77z7xwssd4gh9j5"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; - MatchIt = derive2 { name="MatchIt"; version="4.4.0"; sha256="01kc7qr9clps1ls033hl9fpfwf3nr45mr1cwhfd855r0jzkrd6p7"; depends=[backports Rcpp RcppProgress]; }; + MatchIt = derive2 { name="MatchIt"; version="4.5.0"; sha256="0wk1gjhdmf8wl92k3b9xgjfxxn5sqgddn9gcywch96237q8vlpr3"; depends=[backports Rcpp RcppProgress]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.8.1"; sha256="1spkjpm4pviqv52nknhww1vcjc61sgsfsvp0ilpp4srh0ykc8ihh"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; - Matching = derive2 { name="Matching"; version="4.10-4"; sha256="1ssgcq4n3sm2j3xbclfqqhkbs8i320yn7d8g69aymv28q67kh2ky"; depends=[MASS]; }; - Matrix = derive2 { name="Matrix"; version="1.5-1"; sha256="0pap6pb0is2s02l43y982p7banwi844bjpgbcgf6fb8pb01vlzam"; depends=[lattice]; }; + Matching = derive2 { name="Matching"; version="4.10-8"; sha256="16m4mmlvyslnn77idragbjf2ygmd7r6kwrgwkwcfnphzvlnjwhal"; depends=[MASS]; }; + Matrix = derive2 { name="Matrix"; version="1.5-3"; sha256="03g0zqkbaa1k52i0d0yyn7vclmg93hdqaid48sbc1ccpvi70ywjf"; depends=[lattice]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.10.0"; sha256="1na3y1crlj57c1xq9ja3v94cx2dr0myrlx9bxvhhwss3q3r1lgby"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.13"; sha256="1s8y8zp9k7rsnyi1d8ghi4brjbbdwxijc9chhla24qm3fi6np33a"; depends=[float Matrix Rcpp RhpcBLASctl]; }; @@ -2900,8 +2913,8 @@ in with self; { MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.13"; sha256="1jd3lnd5zdfipg5l8f7y52vy1pa9mfkjnspk50z881557k6pwmnf"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.3.8"; sha256="1vjbbbdq3nlgp7fdzrsb568v37s3iszcm6c93yz2ckgqxy7m4sli"; depends=[dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; - MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.1.2"; sha256="1gkxq6lnvdv24nvc34fmxz4qilzljxcls1lq29a5ag67dffz7kcj"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf sp tmap]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.7.6"; sha256="07qr6cwa29brsp567vjhfv8pkqijxhhz98bxvagrpjj5gbx1179s"; depends=[cleangeo countrycode dplyr magrittr MazamaCoreUtils rgdal rgeos rlang rmapshaper sp stringr]; }; + MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.2.0"; sha256="1i8gqywl2w7zjl1m5qw8vmy7wn44cp8fkiw4m2iwvf4s9q43xjnc"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf tmap]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.8.1"; sha256="1pw4hgd4bjzm0vbkry6ajndlb337x257amr5zwxr8zaal4j0zrgq"; depends=[countrycode dplyr magrittr MazamaCoreUtils rlang rmapshaper sf stringr]; }; MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.8"; sha256="0png8yfnn5wch04c9krxnvy4bbpz0syrir8i536giw6fbk7hfy1y"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils MazamaRollUtils rlang stringr]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeTo = derive2 { name="MeTo"; version="0.1.1"; sha256="0zn63qljsw3bnxpj823lrkcl3rnxksjsaxzn6dbddw41j80mmfa4"; depends=[lubridate]; }; @@ -2910,11 +2923,12 @@ in with self; { MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; - MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.9"; sha256="0vvmp6bf5ka8ivi1z6rl6rcvbks14c7g1f0sisqqjwsza3fi5s9m"; depends=[devEMF doParallel doRNG flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; + MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.10"; sha256="04say70f7wsa245apak44r7jz2gp2vp3zppg1sqs5pxn9009ah9m"; depends=[devEMF doParallel doRNG flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; Mega2R = derive2 { name="Mega2R"; version="1.0.9"; sha256="1wpn03csv88958ppg4idwidcdvr1gf3bps4c0sf5z3ri78awb28f"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.6.0"; sha256="0qf2kb04ia5rdasvs34ziwyan5k327gi45frjkhmi5qsz64z51bg"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="1.1.2"; sha256="1iixn75vp66gbhllppm8xaxxqg8qbp4m5db8qznnysm8gn5wcl7f"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; MeshesTools = derive2 { name="MeshesTools"; version="1.0.0"; sha256="0vr7l9g53h1rxyhn8c8l3hmbsh7c2cfl3jvlrnm2jhpfcsp8851g"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; + Mestim = derive2 { name="Mestim"; version="0.1.0"; sha256="1alav9xihq7mdz9cd24sh5nkblh8nm5h2zsrqizqg3w4dw288dgj"; depends=[]; }; MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; }; MetBrewer = derive2 { name="MetBrewer"; version="0.2.0"; sha256="0x51g5z9cdl043rna9qh4cj16qxahb6ccj9d8rr9d43d860jigp7"; depends=[ggplot2]; }; MetGen = derive2 { name="MetGen"; version="0.5"; sha256="00yzaicrpwfnxi5mdzwx1ai721vczkkf2yl50q9wwpxhmfx0xbbh"; depends=[chron glmnet MASS]; }; @@ -2941,9 +2955,10 @@ in with self; { MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; MetricsWeighted = derive2 { name="MetricsWeighted"; version="0.5.4"; sha256="1hv2bgd64km303l09kva0pa9wx95f82qa9c4zl8nrmfhi2dvckqh"; depends=[]; }; + MfUSampler = derive2 { name="MfUSampler"; version="1.1.0"; sha256="0jzql2hs335gd4kwj18yi8ygsi3190wacfs3mgrmshdjb2frkh15"; depends=[ars coda dlm]; }; MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; MiMIR = derive2 { name="MiMIR"; version="1.4"; sha256="0gy4mp4dc25jzks62rw1w3xwrr4zs4q4cix2mlcmhh807km0g3xf"; depends=[caret dplyr DT foreach fs ggplot2 heatmaply matrixStats plotly pROC purrr shiny shinycssloaders shinydashboard shinyFiles shinyjs shinyWidgets survival survminer]; }; - MiRKAT = derive2 { name="MiRKAT"; version="1.2.1"; sha256="1ypxs6p8jzd2y5rxbfrr2z1xib6im9i58wvcz4cqcgpw298w7ard"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; + MiRKAT = derive2 { name="MiRKAT"; version="1.2.2"; sha256="1ia5by9gnm9lbflp2lcqm04z3z1jh7h33p238k8ycypbbx2yy12i"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1.2"; sha256="1alpa7xsk669rsh0s7kjdnk1ymlfm81rw011pk29fi7p2jc505iv"; depends=[ggplot2 pROC]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; @@ -2967,7 +2982,6 @@ in with self; { MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.4.1"; sha256="1qlz418im27v7q3xk09a2w3zdx7ky5imcyi3kpg1s3bz5zx57p2f"; depends=[stabledist]; }; MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.3.7"; sha256="0l1qivl9a5b8rayg9srxlgkk4wilv2m9yw4lsca29s5wd3wpyksv"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; - MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; MixMatrix = derive2 { name="MixMatrix"; version="0.2.6"; sha256="007vx59v5h3pfawg6slqgbs3b8dvbhcfh4cvasfydidiiyaggjdc"; depends=[CholWishart Rcpp RcppArmadillo]; }; MixOptim = derive2 { name="MixOptim"; version="0.1.2"; sha256="14blyb1dqbdb14rby4nrggpqdx6b43lbb2xwi3059biq9mrj3a2x"; depends=[desirability ggplot2 patchwork rlang]; }; MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; @@ -2991,7 +3005,7 @@ in with self; { MoTBFs = derive2 { name="MoTBFs"; version="1.4.1"; sha256="03c1k5vvswlhbsivw6yznw1v0cdl8avs514iaa2v2994j2yk40j6"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; MobileTrigger = derive2 { name="MobileTrigger"; version="0.0.31"; sha256="1zbnxdxh6gr4sgpi10i0pnd85f7i842105jgjswacziqamby6mcy"; depends=[caret ggplot2 kableExtra knitr mailR plyr XML yaml]; }; ModEstM = derive2 { name="ModEstM"; version="0.0.1"; sha256="136g7rdphprx5b2xmb4jnixaam23g78m3fyfwz3mfx1w23ajf4r1"; depends=[dplyr rlang]; }; - ModStatR = derive2 { name="ModStatR"; version="1.3.1"; sha256="16mfggplpmjz2kspfa99q4gbm4avm306d83n8hiki382094li1ni"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; + ModStatR = derive2 { name="ModStatR"; version="1.3.2"; sha256="18xsdflns5w5p5aqxmjh8xcnh13r5wy1m4skm257r3mg1d5b2agw"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; ModTools = derive2 { name="ModTools"; version="0.9.4"; sha256="111rhdw917rynwsh6l6nsma5pjyi3ix9gjy5fx620d6ywcq7b227"; depends=[AER C50 car class DescTools e1071 lattice lmtest MASS naivebayes NeuralNetTools nnet pROC pscl randomForest relaimpo robustbase rpart rpart_plot sandwich survival]; }; Modalclust = derive2 { name="Modalclust"; version="0.7"; sha256="0ymzdxp6rh6baih1xm6kj8l8jxjclvnmq0gfp38cl8lpskspb26x"; depends=[class mvtnorm zoo]; }; ModelMatrixModel = derive2 { name="ModelMatrixModel"; version="0.1.0"; sha256="0w8j32b2yw7x8lr1a9bgs4ylxfsxw8m06q7xpgsiz6sjicspc714"; depends=[Matrix]; }; @@ -3011,7 +3025,7 @@ in with self; { MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.5"; sha256="1yqqvbj53111wlmi9c8xg7yylgasl97mn5bx0w5zkmnx0xvq004i"; depends=[lavaan Matrix]; }; Morpho = derive2 { name="Morpho"; version="2.10"; sha256="039gnlfgwi5qvffpx0b9v7chhj9acrnxybm56ssam5znri3wbqyw"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg sf]; }; - MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.0.0"; sha256="09s00spslzsf4x8i29fs0nggwa1afh772hkg7r6pvkam88p0x1y8"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; + MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.1.0"; sha256="096siq21z4gsyn7hhkddmxvc6n9vl2diiybfjimycrb0dh17xgy4"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; Morphoscape = derive2 { name="Morphoscape"; version="1.0.0"; sha256="1kmr9pf5a6lyhmzbzs8h8fvr4lhm5f9k5a1bbglw369m053rgd4c"; depends=[automap concaveman ggplot2 sp]; }; MortCast = derive2 { name="MortCast"; version="2.7-0"; sha256="1hw20wb0sl8q09vv68hid90ma2ml866kglsjf38kqky1whmihfbc"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; @@ -3030,7 +3044,7 @@ in with self; { MultBiplotR = derive2 { name="MultBiplotR"; version="1.3.30"; sha256="0cnn8m4yd2w0izbsvrlqgxif41554nq3hj7m169lxwxrb0csybcf"; depends=[car dae deldir dunn_test geometry GPArotation gplots Hmisc lattice MASS mirt mvtnorm optimr polycor rgl scales xtable]; }; MultEq = derive2 { name="MultEq"; version="2.4"; sha256="0x0mfmrfcjdv7v5nlakmjh2ilmgn15xgzc4qgm6djkif6565v46i"; depends=[]; }; MultIS = derive2 { name="MultIS"; version="0.6.2"; sha256="02ca1r8qfsl1b8rfawdn4xrlwhg5yab260rrsx8ckyv3v75knk8f"; depends=[cluster clv clValid dplyr foreach ggplot2 igraph ltm plyr poweRlaw RColorBrewer reshape2 rlang rmutil]; }; - MultNonParam = derive2 { name="MultNonParam"; version="1.3.7"; sha256="10a4nsgwhg2sz9byxhng9clgrqp2zqawcrhzwb8jllw38y2mg1wp"; depends=[ICSNP]; }; + MultNonParam = derive2 { name="MultNonParam"; version="1.3.8"; sha256="0j6ma63yq4nj22vqlpbid24cdva8pj2d03ym9irwx5mp70f5zk55"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-2"; sha256="0bra4z37njkcgah3a1k6mxcnmxq85188jywhgx3fdb1wnv5ic549"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; MultiATSM = derive2 { name="MultiATSM"; version="0.2.4"; sha256="11x6yah7a825wyycq32jpajrh4y45sss10p2w5zpavij37kn4hms"; depends=[ggplot2 hablar pracma wrapr zoo]; }; @@ -3067,7 +3081,7 @@ in with self; { Mychisq = derive2 { name="Mychisq"; version="0.1.3"; sha256="0667ldi1qm47cpdr0j7gv7c6f8s5wj7naqcgv9harrsmm4vsr4w6"; depends=[]; }; N2H4 = derive2 { name="N2H4"; version="0.8.2"; sha256="1bqkjfw14jlk3hr10g5djp358qj07c8x4xyjsrcs86zx6yq2gbda"; depends=[httr2 jsonlite magrittr purrr rvest tibble]; }; N2R = derive2 { name="N2R"; version="1.0.1"; sha256="12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; - NACHO = derive2 { name="NACHO"; version="2.0.0"; sha256="1nd2sxgj8yyjynn0bd6k7pq40isxycr9a5bz0g42ndm4kyd1vjva"; depends=[data_table ggbeeswarm ggforce ggplot2 ggrepel knitr rmarkdown shiny shinyWidgets]; }; + NACHO = derive2 { name="NACHO"; version="2.0.2"; sha256="1y1169r8cm5dv4sir5840y9vr78jfzym917807hydrkplr8ifh4h"; depends=[data_table ggforce ggplot2 ggrepel knitr rmarkdown shiny shinyWidgets]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; NADA2 = derive2 { name="NADA2"; version="1.1.0"; sha256="0fpxcyxwjz20h5dcyijbd09msw2c0l9fd2z5schdqhhfb6ravzcl"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; }; NADIA = derive2 { name="NADIA"; version="0.4.2"; sha256="19545sc75a82smjvvyd353wjlh3wwzhwapcrk9fkg3ffjv9p4a3n"; depends=[Amelia data_table doParallel foreach glmnet mice missForest missMDA missRanger mlr3 mlr3learners mlr3pipelines paradox rpart softImpute testthat VIM]; }; @@ -3118,7 +3132,7 @@ in with self; { NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.18"; sha256="0h0pxjg6ppz9zv7wcv1dka5g0f9wxk3bnwicfpsv1advcam4vmmn"; depends=[ggplot2 gridExtra MASS meta netmeta reshape2]; }; - NMF = derive2 { name="NMF"; version="0.24.0"; sha256="14yxra6in5c1md5nr75y8cdmh9pg0lxqabqflvlhgg1vbg9i2628"; depends=[Biobase BiocManager cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; + NMF = derive2 { name="NMF"; version="0.25"; sha256="0kdl7yz4v7pms6y2lff4x5w7pwkx54488qx0v539qmvcbxv1if98"; depends=[Biobase BiocManager cluster codetools colorspace digest doParallel foreach ggplot2 gridBase RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0.1"; sha256="1fdrw69zz2ri6wi1kd7v960kykacjxyr37iv8q5h7kwiidl0ha76"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMMIPW = derive2 { name="NMMIPW"; version="0.1.0"; sha256="13mv6dpmlldqxkxq6kiydsfwyys5w7i8ws80a5l3377i5chdqi2c"; depends=[lava nloptr numDeriv]; }; @@ -3126,17 +3140,18 @@ in with self; { NMTox = derive2 { name="NMTox"; version="0.1.0"; sha256="1slz6bq57l3f2wqd2nhm3b7dag6vg7wy9zi5rpl7ld1yyqfb0wfp"; depends=[dplyr forcats ggplot2 gridExtra Iso tidyr]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; NMcalc = derive2 { name="NMcalc"; version="0.0.1"; sha256="15jf38yvyiasq6bvnv23znp64njag432f1jb9zayghsny63m3dcl"; depends=[data_table]; }; - NMdata = derive2 { name="NMdata"; version="0.0.13"; sha256="038zps1017yw6varc3dgijhakx3z2sp5hrp9k03pgp6g2ygchi6v"; depends=[data_table]; }; + NMdata = derive2 { name="NMdata"; version="0.0.15"; sha256="11nj9s7bzzhgxgniyxlwakk06xkjhw1j8lv0skgwxb1lw6nb3maa"; depends=[data_table]; }; NMproject = derive2 { name="NMproject"; version="0.6.9"; sha256="0br58m07yf5bxizz3m14rbskhracyg99gq6di9a5rgzycgs3rvg4"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.9.2.1"; sha256="05prbxvbrkg00kj78m6i9402z1mwswh780va20dc5cm7bm4in0si"; depends=[caret data_table doParallel meboot MESS quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; + NNS = derive2 { name="NNS"; version="0.9.4"; sha256="0yr9pw198wdd064lvxbnnw8nd6x94xf80im0r02kwf6b2l3zxz8g"; depends=[caret data_table doParallel meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; - NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.4"; sha256="10q5h9kafni3wlnn1gdsgd9a90km5snrjz1nr0ilafmdvw9vg6v1"; depends=[MASS MCMCglmm metafor]; }; + NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.6"; sha256="1i8pwk4p43yqmk8irkmvza080sngmng0wv1yr847253a0frjg9mr"; depends=[MASS MCMCglmm metafor]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NPBayesImputeCat = derive2 { name="NPBayesImputeCat"; version="0.5"; sha256="05zwa7hhf8p1icgdvvla0r70fgvjm7s38gp69h7wgsq8yl6vd876"; depends=[bayesplot dplyr ggplot2 Rcpp reshape2 rlang]; }; NPCD = derive2 { name="NPCD"; version="1.0-11"; sha256="107i33z4q5w2828sm0pm8234kmp1v3a2w72lmhvi0rpnjhg0x120"; depends=[BB R_methodsS3]; }; - NPCirc = derive2 { name="NPCirc"; version="3.0.1"; sha256="0hljqfyrb8r76f6lkjn0jgr15wnyqv3pc3bv23bdw0hxq574aiwc"; depends=[circular misc3d movMF plotrix rgl shape]; }; + NPCirc = derive2 { name="NPCirc"; version="3.1.1"; sha256="0qcam9n9llsblrpa2w0yj0axh79qwinz4wwbf4gvyrajfv935i8i"; depends=[Bolstad2 circular misc3d movMF plotrix Rcpp RcppArmadillo rgl shape]; }; + NPCox = derive2 { name="NPCox"; version="1.1"; sha256="09cyaj2xlad8277bw5nbdi51imhw5dr78zqks0cz3513igc262sa"; depends=[]; }; NPHMC = derive2 { name="NPHMC"; version="2.3"; sha256="0mi92rnpm96nc2ip10022qa7cjrlry9aibw8yx9xmn826bqipwir"; depends=[smcure survival]; }; NPHazardRate = derive2 { name="NPHazardRate"; version="0.1"; sha256="0na4iphva1dadz457ii8kxrhnki2asaxpbwr824rljyrldj9rcgg"; depends=[survival]; }; NPIstats = derive2 { name="NPIstats"; version="0.1.0"; sha256="0hbx2mzz1z2158c943dqfn0pq1aybj1xxy55mmvld4djr5zrlz9w"; depends=[dplyr]; }; @@ -3168,11 +3183,10 @@ in with self; { NetCoupler = derive2 { name="NetCoupler"; version="0.1.0"; sha256="1xycg179anf78kd1xfwzlmfp8igrl7k2bv105w3s2df5pd8gnpbg"; depends=[checkmate dplyr ids igraph lifecycle magrittr pcalg ppcor purrr rlang tibble tidygraph tidyselect]; }; NetDA = derive2 { name="NetDA"; version="0.2.0"; sha256="149wadsw6h2nlw8fpn1n9ami484zyzhbss5fdhc84bvcs21ivl81"; depends=[glasso]; }; NetExplorer = derive2 { name="NetExplorer"; version="0.0.2"; sha256="0k8jhl0p2dp45lx4h77r0bkcff8vn1f9gvr475cshpmyipziiwnq"; depends=[]; }; - NetFACS = derive2 { name="NetFACS"; version="0.4.0"; sha256="1g4m4iwdyfvs9cfmcagxs5j0pm223m0p73szg8np16y2rappk55m"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr vctrs]; }; + NetFACS = derive2 { name="NetFACS"; version="0.5.0"; sha256="05lqfawirdw4fh0hawm815hjdpyli7025dz3a5fsm6jh3l906z9i"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr vctrs]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4.1"; sha256="0zi3b9i2apfdcm85k7ah6r6ad0v6rji5gysb410vc3bgrixa03lk"; depends=[MASS]; }; NetInt = derive2 { name="NetInt"; version="1.0.0"; sha256="08vmqjai1lakbb4zs895fn0hn3gw2q7zsdkx6yxidfff5qn4mq6b"; depends=[mathjaxr]; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.11"; sha256="0pppcpij4wn1gig7lyh122x52dx8x1dy98v5cphmrap8mpj4x7h2"; depends=[abind CircStats data_table matrixStats quickPlot raster sf sp SpaDES_tools]; }; - NetMix = derive2 { name="NetMix"; version="0.2.0"; sha256="097cyk0lf3h4v3ff0icqj7a80yvs06damw1sc4hdqf2f21d6qihh"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; + NetMix = derive2 { name="NetMix"; version="0.2.0.1"; sha256="0363z06y7ildk7bifhj2lmva0hf591nyp10x9ccd6csj387n968p"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.1-4"; sha256="061hfllic8z3ps4znk3c7qjhzqdifk99ikvczxacih5hw86a9j4m"; depends=[colorspace corpcor Hmisc igraph mvtnorm plyr]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.2"; sha256="07drrgvgl3msbcxi113hinqss30lkzrv9hqkzwa41bpssfq8x68c"; depends=[graph]; }; NetRep = derive2 { name="NetRep"; version="1.2.4"; sha256="1swlb2k9bc7whvslxbklz864j9ynvna73hvq5rhv61cv5vy05ksd"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; @@ -3183,7 +3197,7 @@ in with self; { NetworkChange = derive2 { name="NetworkChange"; version="0.8"; sha256="03rzyfiwbqpr4jj3wdg3s1gnfizz39j07yk0q2fkq3a8pfx4w306"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr tidyr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.2.1"; sha256="0a4v69p1xykzb4s9sqj2bqm333a6sx2j8f8jdnp3l7dlkwg9clqp"; depends=[IsingFit IsingSampler Matrix qgraph reshape2]; }; NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.4"; sha256="0z3q15aq5jqwbyxr4464nq74ib7644f185h8wfzvfi491xkrl4cr"; depends=[doParallel foreach graphon igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; - NetworkExtinction = derive2 { name="NetworkExtinction"; version="1.0.0"; sha256="0mnvidqbmd11aq6kh7m4y36lxaz0ks5h69ilskl49562ggxm741q"; depends=[broom doParallel dplyr foreach ggplot2 igraph magrittr MASS network purrr scales sna tidyr]; }; + NetworkExtinction = derive2 { name="NetworkExtinction"; version="1.0.2"; sha256="19rgz2v4p0q6j7q3gs695j2jpxzlwvx06bhcji68hkrn78745ag0"; depends=[broom doParallel dplyr foreach ggplot2 igraph magrittr MASS network purrr scales sna tidyr]; }; NetworkInference = derive2 { name="NetworkInference"; version="1.2.4"; sha256="1x63szbns8wf3k89ibk2p66prngw4fr2ckfn1568mnxdwnzvhrb4"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.4"; sha256="1121ma43jxc4p9rw0sc8w32shf9xrmn5qd1xsqgzr8diymc49zhg"; depends=[dplyr expm ggplot2 Matrix]; }; NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.4.2"; sha256="026gizms1xsmlpzgssgqi2y5lfhvvbqkwy5q3a0d4xvzbmyan3y7"; depends=[corrplot doParallel fdrtool foreach igraph IsingFit MASS pbapply ppcor psych pwr qgraph R_matlab]; }; @@ -3204,14 +3218,14 @@ in with self; { NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; }; NonCompart = derive2 { name="NonCompart"; version="0.6.0"; sha256="0cda8rd45irx8q33zs9hcfhsanq09hnx3fpkpa9173pn0j6iw0zv"; depends=[]; }; NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; - NonParRolCor = derive2 { name="NonParRolCor"; version="0.6.0"; sha256="0z4c5f2x995k2lgfwnylag69sgrzq1n3qg9c8fn1mhzkdw4y4108"; depends=[colorspace doParallel foreach gtools pracma scales]; }; + NonParRolCor = derive2 { name="NonParRolCor"; version="0.8.0"; sha256="1rh345vydbg31pbkagyb2xmsy8riam9zj7sc86m6dqvl19lglvg5"; depends=[colorspace doParallel foreach gtools pracma scales]; }; NonProbEst = derive2 { name="NonProbEst"; version="0.2.4"; sha256="1w2ihnwwdnxlnphyd26261lsxaknpi51c15rmn9m183djz9gsvdv"; depends=[caret e1071 glmnet Matrix sampling]; }; NonlinearTSA = derive2 { name="NonlinearTSA"; version="0.5.0"; sha256="1z3fqw19kksadc31f1idrj37gzajrx91pprd07xdar7j6hddf4sn"; depends=[car minpack_lm tsDyn]; }; Nonpareil = derive2 { name="Nonpareil"; version="3.4.0"; sha256="130aags0pgry0d34mj1n4lavc8q43hls7c3jhmkr8k6vyg3ij372"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; - NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.0.2"; sha256="0i02mqxgyzm6y02rbk6skqp58hf35cg4wpfa9abx8rsmbg09jpxj"; depends=[dplyr DT ggplot2 rio shiny shinyalert shinyBS stringi stringr]; }; + NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.1.0"; sha256="0r9a51z614si3b45g01lfgapmgc4smjf2hylgy5kvq8w0yh0w5y6"; depends=[dplyr DT ggplot2 rio rmatio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; NovelDistns = derive2 { name="NovelDistns"; version="0.1.0"; sha256="073969vk2vg58fx5h0v92m3zb1rdzlvv809vyahy3gxrj9n13lmh"; depends=[AdequacyModel gsl rootSolve]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1.1"; sha256="0fanf7cl8dlb8iqw8ww03dd5s6mrpr97m2c511clqkaavbd0yzkp"; depends=[]; }; @@ -3220,7 +3234,7 @@ in with self; { OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.9"; sha256="13jx5f5piii9cys7xyhfwilyg87zsi632fscy8902mlhbgg7abkp"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; OBIC = derive2 { name="OBIC"; version="2.0.1"; sha256="0yrgnrhxn5nv0gbhzj2psskr12yaygv7bns64al1cgk18dlrsgb0"; depends=[checkmate data_table]; }; - OBL = derive2 { name="OBL"; version="0.2.0"; sha256="03a8xk7gakziw9bd25izpsby0r7b28wyhd785p22m4dfl46663pg"; depends=[dplyr forcats foreach forecast ggplot2 tibble]; }; + OBL = derive2 { name="OBL"; version="0.2.1"; sha256="06icw1dnmavgaf51fs2nfi6582cpjrnlii1j9s62nwnwfnqw00v3"; depends=[dplyr forcats foreach forecast ggplot2 tibble]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; OCNet = derive2 { name="OCNet"; version="0.5.0"; sha256="111sk662a3qrkknlvw1x605gg5rskyayd1scafbswp6zjgrczgh4"; depends=[fields igraph rgdal rgl sp spam SSN]; }; @@ -3271,10 +3285,10 @@ in with self; { Observation = derive2 { name="Observation"; version="0.3.0"; sha256="1z9ldp050f7jy76s8yk509nwjx1ymvk5k9d19i67brd7xcawxnr3"; depends=[svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.6"; sha256="1ww6xhpvs3y0zx7pgj8083a8v4l4cm0b0b497b4gsjbcbnbnal9c"; depends=[plot3D plot3Drgl rgl shape]; }; OddsPlotty = derive2 { name="OddsPlotty"; version="1.0.2"; sha256="0adgbrni7yrarybh0djmq68hifwqzn2rn9mfqgwqma1d7mg3ai93"; depends=[caret e1071 ggplot2 ggthemes magrittr mlbench rmarkdown tibble tidymodels]; }; - OenoKPM = derive2 { name="OenoKPM"; version="0.1.2"; sha256="1rw740zw38k3q9kl89rvn740d5v4k1hhmlz4bp9ynhnq34g9p9rq"; depends=[extrafont ggplot2 ggtext minpack_lm openxlsx]; }; + OenoKPM = derive2 { name="OenoKPM"; version="2.1.3"; sha256="14hl749zbvw45gnd8iqg630iwfd694rjgjasc91vcrfylaqqhyhj"; depends=[ggplot2 minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; - OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.1.0"; sha256="0cmd6clj18ix64iax6j93ydgbr8gad4pn8cwh401sbbilsc9yi31"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; + OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.2.2"; sha256="1fbq3pw8x9bfnr42is0l4vfzdzp52lf9p9j6x0qgndhqiw9rzg90"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicNavigator = derive2 { name="OmicNavigator"; version="1.11.5"; sha256="0c34gcwwqsl1sxsq54i4lx6ih19jqcfxqbq948rknxz3l5f00jm6"; depends=[data_table jsonlite]; }; @@ -3285,7 +3299,7 @@ in with self; { OnboardClient = derive2 { name="OnboardClient"; version="1.0.0"; sha256="15ymf163a80s4yvi5z884irvkb1ivnxpr505z96s23hs8ibhk2bh"; depends=[data_table dplyr httr jsonlite lubridate plyr rrapply rstudioapi stringr tibble tidyr tidyselect]; }; OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-7"; sha256="0psw7hily07xz61x25mg7iirr8aic32ny0770ks8ldy5rq2qjg86"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.4"; sha256="11pn50zshv1rl2mvars5iwzqfzlm9i8rd1rlz3pn1nn94051d8ab"; depends=[boot]; }; - OneArm2stage = derive2 { name="OneArm2stage"; version="1.1.4"; sha256="0c014kr46rzgcpjq3n2lr2i66gvkqd60m2l5hfc7i5956ia7fvxq"; depends=[flexsurv IPDfromKM survival]; }; + OneArm2stage = derive2 { name="OneArm2stage"; version="1.1.5"; sha256="14vrf3x625c0xad18pajbgb4d4l57f1gqhy4y2l3wg1m1i2kiyns"; depends=[flexsurv IPDfromKM survival]; }; OneArmTTE = derive2 { name="OneArmTTE"; version="1.0"; sha256="186386pjjvlfq38950n1sdx0wq31q8ggjlqlrn07v68bcqjl70y6"; depends=[dplyr survival tibble tidyr]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.2"; sha256="1g2ia06450xy6mbkn13r9wzap1jxz1iw36jiy3699zm9azndd002"; depends=[Formula gmm ivreg lmtest msm]; }; @@ -3337,10 +3351,9 @@ in with self; { PAFit = derive2 { name="PAFit"; version="1.2.5"; sha256="07n27g2yy2lskna7qa4j6am3prdcwfnx98ppvcarsxgzvywz0scv"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PALMO = derive2 { name="PALMO"; version="0.1.2"; sha256="0vh0i5qb26267w5dzply091dh4mcxyza7yyhh7sy2wmwb04834ak"; depends=[circlize ComplexHeatmap cowplot dplyr factoextra ggforce ggplot2 ggrepel knitr lme4 MAST pbapply pheatmap reshape2 Rtsne Seurat tidyverse]; }; - PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; PAMmisc = derive2 { name="PAMmisc"; version="1.9.5"; sha256="1jlfp0b2ipvkzk3715igfqhiha294bn99zi1dc5shr9c47rs44v3"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridisLite xml2]; }; - PAMpal = derive2 { name="PAMpal"; version="0.16.0"; sha256="0chpsqwrimn6v5i24r77dr4ib9kgi71ppmjzjyhck1ygv702g260"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite rstudioapi seewave signal stringr tidyr tuneR xml2]; }; + PAMpal = derive2 { name="PAMpal"; version="0.17.0"; sha256="09rd9h67y27xwgwfxp6k8nvhi0ccsw6h2kx1m1dd90iicbb03yk2"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite seewave signal stringr tidyr tuneR xml2]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASSED = derive2 { name="PASSED"; version="1.2-1"; sha256="1qzxc2xwqw1vc4ld8iask1aijmsl0jhw17rgph08hwl8cqmnm4nd"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.3"; sha256="1p4896r4k6c0aaag4mwds2azp41amf726c4v62zca92cpsay4nml"; depends=[e1071 lattice MASS]; }; @@ -3356,12 +3369,12 @@ in with self; { PBNPA = derive2 { name="PBNPA"; version="0.0.3"; sha256="1wmgcmspilfv6pjy7696j2xmq8m41p27plnr1qr0fnzyz66pf37m"; depends=[metaRNASeq]; }; PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; }; PBSadmb = derive2 { name="PBSadmb"; version="1.1.4"; sha256="11dxy6rdhwairymigwqxd51hxz82011sx0gzzphcs6i4gr0c54c3"; depends=[PBSmodelling]; }; - PBSddesolve = derive2 { name="PBSddesolve"; version="1.12.6"; sha256="0570q1h91695qw9gnkv3d2bip40pzaapy66042qac4yjsg7wca2z"; depends=[]; }; + PBSddesolve = derive2 { name="PBSddesolve"; version="1.13.1"; sha256="062biynya1nr75awri60ak60hs07h7cdnaibjn9943s7gzxgsgi4"; depends=[]; }; PBSmapping = derive2 { name="PBSmapping"; version="2.73.2"; sha256="0glkqcgykhcnh0si0j3f12kapb2w1fglgfll0jrnjikajwvj3fpm"; depends=[]; }; PBSmodelling = derive2 { name="PBSmodelling"; version="2.68.8"; sha256="07qaqb6sd1idmryxlz0gxb4d3apzql9vp4b16nazba08ksx0y7wf"; depends=[XML]; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; - PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.2"; sha256="1dpilm3f6jylm2zggdpdz1gx0z6i56p8rxj744d9lqs1lp6nf37y"; depends=[]; }; + PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.3"; sha256="0ycplivjiz2w3wiqnqga0ywwdbd9mxqzm92k3bjva8009jxxijax"; depends=[]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="3.1"; sha256="0flrsnbchwk06dmkg3vqykp9n4pqs265szn1r10navp8ki3rrmvh"; depends=[]; }; PCDimension = derive2 { name="PCDimension"; version="1.1.13"; sha256="0mpf7m4daqaip18yfsyanrmbjq4ib9fw1b65ajdazicm400bw6gb"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; PCFAM = derive2 { name="PCFAM"; version="1.0"; sha256="196jzv0f6j60zkyagm9n98339ipn8mrhmhl3q4g053z8f6mm9zmv"; depends=[]; }; @@ -3369,7 +3382,7 @@ in with self; { PCICt = derive2 { name="PCICt"; version="0.5-4.3"; sha256="1xihjyhp1mfbm07sy250ijrk4ljz80l5z5w6x2m1j0yss0r6mrqf"; depends=[]; }; PCL = derive2 { name="PCL"; version="1.0"; sha256="0sqlwg0aiw9f1z4x5nixv4x3rq5rnm5i1hijdqygnh9dvckfrgs0"; depends=[]; }; PCLassoReg = derive2 { name="PCLassoReg"; version="1.0.0"; sha256="1m79aiij4dglfz5qhm5h76hxpgszrpzfw37nvx2y6gcq6dya8krl"; depends=[grpreg survival]; }; - PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; + PCMBase = derive2 { name="PCMBase"; version="1.2.13"; sha256="152zs0v64rcw2mgqd2pxydxpdx5ygvl3hd3m9xjv70im6zw43myv"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; PCMRS = derive2 { name="PCMRS"; version="0.1-4"; sha256="0bf85zv3nl13gsdi96cd2qg7mfppsccs0ci7l204hws8nmbvri83"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; @@ -3377,7 +3390,7 @@ in with self; { PCS = derive2 { name="PCS"; version="1.3"; sha256="0v9vczc9hml6mzxglh106a9f5gy3x5m471lkzaw3ps8z76sgrpyr"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7.1"; sha256="1lvj3kf4pnvbr7lk3kzvh72akga49zx25b3w7nq24925s129sqx1"; depends=[GPArotation MASS Matrix ThreeWay]; }; - PDE = derive2 { name="PDE"; version="1.4.0"; sha256="0qizclfaig2a6ybpa1qid2lhzasfb6i30vy6n4mv2765db7h5dkf"; depends=[tcltk2]; }; + PDE = derive2 { name="PDE"; version="1.4.2"; sha256="032r72dmxv8far305y9738grylp0g96p7jkmk0dg5cwm02570zy5"; depends=[tcltk2]; }; PDFEstimator = derive2 { name="PDFEstimator"; version="4.3"; sha256="1pnkds7m7g58ci4n35szdrpq3fpxkblvbyvyf9qwrm8casijfsqs"; depends=[MultiRNG plot3D]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDMIF = derive2 { name="PDMIF"; version="0.1.0"; sha256="0mlc31f4z0k5xk1fil0hx5dcbm7afia74kxb7xmnx4jcblidxnd2"; depends=[diagonals ncvreg quantreg]; }; @@ -3385,9 +3398,10 @@ in with self; { PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2.1"; sha256="1amy4rnvlcfvpma8pqd6wli1j0pjjk49i1qywa43lzgdwgd5dl9v"; depends=[]; }; PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; - PDtoolkit = derive2 { name="PDtoolkit"; version="0.4.0"; sha256="02gw4l4wqz6hccb35ip4ynjqs6dhllkpvglmlzav9djvv3yj83fg"; depends=[dplyr monobin rpart]; }; + PDtoolkit = derive2 { name="PDtoolkit"; version="1.0.0"; sha256="170f5cwq3v8qhj39jms291khz72x9ajswx2sx9m6d2gpf89nwwh5"; depends=[dplyr monobin rpart]; }; PEACH = derive2 { name="PEACH"; version="0.1.1"; sha256="0ciq2cci35rv39pgpp7i30jxlmr85726kh07ww22ryq3bm04ylg8"; depends=[MASS metap mnormt]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; + PEIMAN2 = derive2 { name="PEIMAN2"; version="0.1.0"; sha256="01jsyp9yk576v3bc0a33y0f8w9v4b47g5hc0zahf3zl4bkp8i4wv"; depends=[dplyr forcats ggplot2 glue lifecycle magrittr purrr rlang stringr tidyverse]; }; PEIP = derive2 { name="PEIP"; version="2.2-3"; sha256="1ljalgffgrn9l3q914jjxrn1j740jqk4j8q1vzn3si4np9mz92vp"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; PELVIS = derive2 { name="PELVIS"; version="2.0.3"; sha256="1sym6lbspzqcmg0k0r07kv65pswq39fxx5xdyiv6pm2r3v49p8jq"; depends=[DT htmlwidgets MASS shiny]; }; PERMANOVA = derive2 { name="PERMANOVA"; version="0.2.0"; sha256="1lmnp1g1i1kqa30cvakkl8g2m2h5jl73qx8dy37kv62mv0knlg5m"; depends=[deldir MASS Matrix scales xtable]; }; @@ -3398,7 +3412,7 @@ in with self; { PGRdup = derive2 { name="PGRdup"; version="0.2.3.7"; sha256="0zm0cm98nps2bfr66mb4j7a0v3s407zqrl2l2nvzg9yyqlaznzc3"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; PH1XBAR = derive2 { name="PH1XBAR"; version="0.10.1"; sha256="0b9g2mz0vcaqmbpm0cisr6c9l2bk5y3bn0s9096dl5fq9hyma7na"; depends=[forecast mvtnorm pracma]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; - PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.4.1"; sha256="0w3qnlvh7mpzninmhfcifygh2mlwmr5hzfkfnigvsxr8jfnn2s25"; depends=[broom dplyr lifecycle purrr rlang tibble tidyr]; }; + PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.4.2"; sha256="1qlb0qd4iljgjkpj0yj63p588k4qw8af8civ3hvf32iq8pmnfrkr"; depends=[broom dplyr lifecycle purrr rlang tibble tidyr tidyselect]; }; PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.5"; sha256="0q7gxpfyigvzk7xdpy0bdvvmac7ww1m20il5qgb0bv91rninmr91"; depends=[coxphf lpSolve Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; @@ -3409,7 +3423,7 @@ in with self; { PINSPlus = derive2 { name="PINSPlus"; version="2.0.6"; sha256="0mws1064kwfm3csdzpfn4g2pwjasdmx9nz5x28znxv8hwrlgm2zw"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PINstimation = derive2 { name="PINstimation"; version="0.1.1"; sha256="0n1jn33ckd00j6k4ij941gg8b7qq4vr7sk0zls0irxz6gbasz1zn"; depends=[coda dplyr furrr future knitr nloptr Rdpack rmarkdown skellam]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-11"; sha256="17czxqilgbh2v1kgjvqcz8m1cbjv4iygi5vn27wh1pyaga6sv8z9"; depends=[base64enc]; }; + PKI = derive2 { name="PKI"; version="0.1-12"; sha256="0nidg6l9nrmpyimi502fydy22r247w9i4ngb2xdbxjvfhr17m0xd"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; PKNCA = derive2 { name="PKNCA"; version="0.10.0"; sha256="1vivg8mh5aizqnw6a47k9i0sv8s7sidfaap4n5nv078vncmh9l96"; depends=[checkmate digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDsim = derive2 { name="PKPDsim"; version="1.1.1"; sha256="0h9rxwjh2cxn3mlpgwy86lrq6y820rhxjyxhjyi4l0k7j6cshlbd"; depends=[BH data_table jsonlite magrittr MASS randtoolbox Rcpp stringr]; }; @@ -3431,14 +3445,15 @@ in with self; { PMCMR = derive2 { name="PMCMR"; version="4.4"; sha256="05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77"; depends=[]; }; PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.6"; sha256="1mvj3cwrdkl3frk7fvh6l7v7yya5p3xm4z0qhc4fvykxdmb92ivz"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.18-0"; sha256="1d3bd1k5jqfx0nfac97ghlch5br6d8xh31was4m6skvs1ikqq53h"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; - PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.0"; sha256="0bjqahrnsgc5i506jcjcin62lgn9zx2hrpflpnqzhshkhinnxnbz"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; - PNAR = derive2 { name="PNAR"; version="1.2"; sha256="0m11c07c34cfmjdrb21xb5blbgrkyjgvnighh20jf1skxbl6i1wl"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; + PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.1"; sha256="0dxbx8585irfaaf1yll8jmfa719s07b6aflj8g39zw79lry5fl9d"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + PNAR = derive2 { name="PNAR"; version="1.3"; sha256="0flc02rmyw8q410xcyg2ad00ck7b8jyjqw7xym3yaxg6nfbq8w77"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.7"; sha256="0cs0bpb4fdkgznds579q7fblj0jay6wjyfhwpwc4y6z8ai1rhgja"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNWColors = derive2 { name="PNWColors"; version="0.1.0"; sha256="1phplnclkficfv8s6wsyrckk4ixzbayiy5iix6dddg40485l9nyj"; depends=[]; }; POCRE = derive2 { name="POCRE"; version="0.6.0"; sha256="0kni15dr7qhldn68w51mzg6pyk95dx717qy0f9230hpbg97791hz"; depends=[EbayesThresh ggplot2 pracma]; }; POD = derive2 { name="POD"; version="1.2.0"; sha256="1xg2xzfmzg2qrwd02xy4fwsfmccigw6lm5266z6w1kxzb7p7bbw0"; depends=[]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POINT = derive2 { name="POINT"; version="1.2"; sha256="0b97ish2xxvp7xy0qqbg68hy0nvdvhi8zpgd4wvczn5r8586qk6g"; depends=[CompQuadForm Matrix rARPACK]; }; + POMADE = derive2 { name="POMADE"; version="0.1.0"; sha256="1f9r7bmmc1lblvmb834ss38x2ki4c19mkx9h8i8ygkcdsb931xdv"; depends=[dplyr furrr future ggplot2 magrittr purrr stringr tibble tidyr]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POSSA = derive2 { name="POSSA"; version="0.6.1"; sha256="0w45rhj9qn8fwsy8s1xbpns6vzybcjgmcbwwhqdbyp76w6h3lbk3"; depends=[data_table]; }; POSTm = derive2 { name="POSTm"; version="1.2"; sha256="1fckd5c4hdviwy1b7cmwv8nqkaipfv838yjfsyacj8hxlzdlwlhj"; depends=[ape CompQuadForm]; }; @@ -3451,7 +3466,7 @@ in with self; { PPCI = derive2 { name="PPCI"; version="0.1.5"; sha256="141811iq0g2rq7lxpz9a44kyjfylj85yqgcjq7b23xfg2wbcp8dd"; depends=[rARPACK]; }; PPMR = derive2 { name="PPMR"; version="1.0"; sha256="07fky5xc1dmmn23wwdjm46c86i7q20dv5f2147828v52hhky873g"; depends=[Rcpp RcppArmadillo]; }; PPQplan = derive2 { name="PPQplan"; version="1.1.0"; sha256="072r7myqsnpyla37q6bj9glwvbygb9g8xkl60q055yzxmfh4rsbr"; depends=[ggplot2 plotly]; }; - PPRL = derive2 { name="PPRL"; version="0.3.7"; sha256="0259vg89v3k1h5mf896xf4dihyv1n535ypn1h0syk8sb7f4qr3q9"; depends=[Rcpp settings]; }; + PPRL = derive2 { name="PPRL"; version="0.3.8"; sha256="1m49n7kl9675hrlh6vqq69sp7bdiv4fwlncqpp58kz67jk1ypnf0"; depends=[Rcpp settings]; }; PPSFS = derive2 { name="PPSFS"; version="0.1.0"; sha256="180brwqcs2qjh01a1qwdy2a8g19scn4mxzc3s6pw8gyl2r3fzxi7"; depends=[brglm2 Rcpp RcppArmadillo]; }; PPTcirc = derive2 { name="PPTcirc"; version="0.2.3"; sha256="07py7zdl7nhc1a425mz7cmgl25k0k9fdid754pnkffn5n5xkbca1"; depends=[circular progress]; }; PPforest = derive2 { name="PPforest"; version="0.1.3"; sha256="1byn2l91nws91xgjjal610vv4yns12z861rq3iks4kv4giwgdfq1"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tibble tidyr]; }; @@ -3483,7 +3498,7 @@ in with self; { PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1.2"; sha256="1gs2wdi5mcwvn8jqc7ximll05m824jib6hmxm8b850yy2cb3n1l4"; depends=[]; }; PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.5"; sha256="00zwbw9bn5bs181m831nb08wwrmp2jpmqmriy8j52njq289hnc32"; depends=[cluster data_table]; }; - PSGD = derive2 { name="PSGD"; version="1.0.1"; sha256="0yf1cmanm41i71c3fzkp1mmd2v9sn5yn3hadxrmvmrql1i9j2s4x"; depends=[Rcpp RcppArmadillo]; }; + PSGD = derive2 { name="PSGD"; version="1.0.2"; sha256="1dqm1pv6cqcf69bxywwg0q5n98g95b363gszi2k19bkwvh4a1jq9"; depends=[Rcpp RcppArmadillo]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.8"; sha256="0vccvhda86430w3gkjhg565i77dci1aa6pizs61w1xjc75rrbnan"; depends=[pkgbuild rstudioapi]; }; PSS_Health = derive2 { name="PSS.Health"; version="0.5.1"; sha256="0rdqkwry6zpf0nm3in8agb3kw1g705i3knydzs8bpsnhna4ap802"; depends=[dplyr DT easypower EnvStats epiR ggplot2 ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper writexl]; }; @@ -3491,6 +3506,7 @@ in with self; { PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.4"; sha256="0iyhs2sas08kjl6hd0y4n4rz4lvvvlrz3w3izl3may6mscykrciy"; depends=[dtt gtools infotheo phonTools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; + PScr = derive2 { name="PScr"; version="1.0"; sha256="0376dddwydgnwdpxdvv9cp8nk2j57dsqmfa94njxw9a19r7g3xw5"; depends=[gtools LambertW mstate nlme pracma survival VGAM]; }; PSweight = derive2 { name="PSweight"; version="1.1.8"; sha256="0vawkkgm72s17cjfww9175dyr100lxdv4gf35p2lz8wcnbsklnv5"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; @@ -3533,15 +3549,15 @@ in with self; { PantaRhei = derive2 { name="PantaRhei"; version="0.1.2"; sha256="0lv04aa70yd5gr0zfh2gmah4d4h3kw0lym6284akcvll8mhdi8dd"; depends=[]; }; ParBayesianOptimization = derive2 { name="ParBayesianOptimization"; version="1.2.6"; sha256="0g5i4908fl2j1a4jfsg1xs4q92mc29zp8dyf52a370ki2512w6h1"; depends=[crayon data_table dbscan DiceKriging foreach ggplot2 ggpubr lhs]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; - ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.5"; sha256="02sixlx3lmr58hkcxlbmiw27pvz777ngkz3mfz4qaii8yhxsjvy9"; depends=[caret gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; - ParallelLogger = derive2 { name="ParallelLogger"; version="3.0.1"; sha256="14kqqyfgj5mhm42fqpqw5r409qjnrk38nsls4svm4p7qvyvvhxm2"; depends=[jsonlite snow xml2]; }; + ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.7"; sha256="10yqq7hki08qvymlw6f1w6rrg6381bzhyqa1v2ryxszx3prxxcps"; depends=[caret gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; + ParallelLogger = derive2 { name="ParallelLogger"; version="3.1.0"; sha256="1cjm498831wzcdfbj6r75agbhw99mccrfvzjcvj7jzz0k82ha4b7"; depends=[jsonlite snow xml2]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.14.1"; sha256="088sl3az4ysq8cyw82brdn9xm5yy7rqskxih462d1m5hi62gyl04"; depends=[backports BBmisc checkmate fastmatch]; }; Pareto = derive2 { name="Pareto"; version="2.4.2"; sha256="0396jixa4scqcgq8qyhin91mppg4knz2bfik67jh119clwdrd8vj"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="2.0"; sha256="0pb0digyigqyzb0zqikgz002kqf1xprcjhxr62a7iqbzy1yycayf"; depends=[]; }; - Patterns = derive2 { name="Patterns"; version="1.3"; sha256="1jmj7jr7q5f6iqrrlv6dz0n2igbppnxfvbdh5nwf5bndyxlldqxn"; depends=[abind gplots igraph jetset KernSmooth lars lattice limma magic Mfuzz movMF msgps nnls plotrix SelectBoost survival tnet VGAM WGCNA]; }; + Patterns = derive2 { name="Patterns"; version="1.4"; sha256="12ci26i0ks23ff11g3pmsns5f3crnrac2hnlqc2pglhrv180m37r"; depends=[abind gplots igraph jetset lars lattice limma Mfuzz movMF nnls plotrix repmis SelectBoost tnet VGAM WGCNA]; }; PdPDB = derive2 { name="PdPDB"; version="2.0.1"; sha256="05aqg0rqrnlmvjxa32ms1vywgwhw5zlfkyf2ij0fn06rp8l2z3lv"; depends=[dendextend plyr tseries]; }; Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2021.7.1"; sha256="0rsh81p0w11zp8rgxx9cm8537gxhf9hx6xizpbflfx60xhr96is5"; depends=[]; }; @@ -3557,7 +3573,6 @@ in with self; { PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; Peptides = derive2 { name="Peptides"; version="2.4.4"; sha256="1yppbcsa0rb74mmspb6f6c9slcjy5x6c484dk9gy48sg33chp1zw"; depends=[Rcpp]; }; PerFit = derive2 { name="PerFit"; version="1.4.6"; sha256="13917nvxii8pg69h1wcpmlv45sdrdldd3zxdrypr4mn456ff74k4"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; - PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; }; Perc = derive2 { name="Perc"; version="0.1.6"; sha256="1nwbj56m7pxrg8dyv36501b0lvpq8gbhcr07vs4nps8n3rqwwg81"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.5"; sha256="13yjk0kwpbsqwl056hzf0zj2br1mk4faqcn1whdfxmq348c14hjb"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="2.0.4"; sha256="0ci26hsj4wnw9g0mh4vrn0cg986cpcpx169rvw6v6rbnjxq718bq"; depends=[quadprog xts zoo]; }; @@ -3573,6 +3588,7 @@ in with self; { PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.3"; sha256="0lr1gnwpaqrf8ny5ssx2cjv8hi6q2ilmr7qif3jl9agh4w0nkp89"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + PhaseType = derive2 { name="PhaseType"; version="0.2.0"; sha256="0vcmvixb2flrn7qz3568whg5njkxny4hxlmf3ybyi9shfb7jss0a"; depends=[coda ggplot2 reshape]; }; PhaseTypeR = derive2 { name="PhaseTypeR"; version="1.0.4"; sha256="063hl41jnzya189g8pm0kjvh7w4h31hfb4zhvrnh6nk4kr5xa70m"; depends=[expm igraph]; }; PheCAP = derive2 { name="PheCAP"; version="1.2.1"; sha256="00dfy0iby21kqfxz2npz4dn1klxcdlll8xrk2hsmc56fjfidbdhz"; depends=[glmnet RMySQL]; }; PheNorm = derive2 { name="PheNorm"; version="0.1.0"; sha256="10223yfaajzq1ip5qj3kk6iyjzrbb619jkrsxawb0dpkrj56d8v7"; depends=[]; }; @@ -3632,7 +3648,6 @@ in with self; { PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.6.0"; sha256="0s8lr17s6w8isjig4z8jzgpnpsb1kg98d32y7kslbwzl08cbnza0"; depends=[boot codetools dplyr ggplot2 gtools magrittr MASS mvtnorm purrr stringr tibble]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.7"; sha256="0drf3yaxrcypl3b6qdl4kkn8zw31hrnkp49lxpisfjsaybj5lk40"; depends=[ade4 adegenet calibrate dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; - PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.3.0"; sha256="1yc2qz7g5jv752yrhjq1ymfdjbqwdcp0hv7pm93qsn51k8fc8i9i"; depends=[BGLR qtl rrBLUP]; }; PopulationGrowthR = derive2 { name="PopulationGrowthR"; version="0.1.1"; sha256="0cq7vnmslb4y9d9a4jk7z5xajw4vr2q1qqhkak9m9gidyr4dp5zl"; depends=[dplyr]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; @@ -3694,7 +3709,7 @@ in with self; { Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; Pstat = derive2 { name="Pstat"; version="1.2"; sha256="17bqkaf9590jhiaamaafmvkqmy2aqkcfqhk8m4w35g58j48yk4yx"; depends=[]; }; PsyControl = derive2 { name="PsyControl"; version="1.0.0.0"; sha256="1c5ml6s3c8kzf7p0mig84bmq40b0491ah713bm6jpy2s3nwnmafs"; depends=[irtoys ltm]; }; - PsychWordVec = derive2 { name="PsychWordVec"; version="0.1.0"; sha256="1b8s1w391f81adw4im1w5nw3g495iq9d2fmg4535zmh5kyqpkhpa"; depends=[bruceR data_table dplyr fastTextR ggplot2 ggrepel rgl rsparse Rtsne stringr text2vec vroom word2vec]; }; + PsychWordVec = derive2 { name="PsychWordVec"; version="0.2.0"; sha256="0afl7n8zzkylm51nm5hhjrahk8h96jvxz6hysyc2bmhpkrh9bp94"; depends=[bruceR cli corrplot data_table dplyr fastTextR ggplot2 ggrepel psych purrr reticulate rgl rsparse Rtsne stringr text text2vec vroom word2vec]; }; PtProcess = derive2 { name="PtProcess"; version="3.3-16"; sha256="1d5i847jy9i1llbfsdkqcjmiids3kjxnqscinrwqyv7mwb9ijk2z"; depends=[]; }; PubMedMining = derive2 { name="PubMedMining"; version="1.0.0"; sha256="03lhml5jk69racmhlh6xa8j2rv8xb87vg6hr1caiqpd4kqg16n1q"; depends=[easyPubMed stringr]; }; PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.6"; sha256="1wfp1fpr4an7psrwidx38brvhvghmvfsgjy4gdx81p1bdsdn2kw2"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; @@ -3728,11 +3743,10 @@ in with self; { QHScrnomo = derive2 { name="QHScrnomo"; version="2.2.0"; sha256="1g7gx1mhvqnldqwi9dx5f7nxqrra9mgfn5rq467f1nhlv6m2kzn6"; depends=[cmprsk Hmisc rms]; }; QI = derive2 { name="QI"; version="0.1.0"; sha256="1r65xq892mga54dfbh5va5zji5d1dx8k0fy611kbdviwqf0dfhx5"; depends=[ggplot2]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; - QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; QR = derive2 { name="QR"; version="0.1.3"; sha256="1xar0mj8s2nb8sks8dzf4wn1axc4rhmhx1qsjn2blsi4i8gfncka"; depends=[tinytest]; }; QRAGadget = derive2 { name="QRAGadget"; version="0.1.0"; sha256="0vmhbpfbbpbcs6s9zjam893yl54spbx4x4698c504g96hcc19kkp"; depends=[htmlwidgets leaflet magrittr miniUI raster scales shiny sp]; }; - QRISK3 = derive2 { name="QRISK3"; version="0.3.0"; sha256="0aqqncmlhb5iks8081y34ydlls3g31j994fqqzsbsc3ckcks87qj"; depends=[]; }; + QRISK3 = derive2 { name="QRISK3"; version="0.4.0"; sha256="1cya1va5msjrlfn49npvfqiyq9sm4kfxsaszxqwkxvxk8aw9ns1i"; depends=[]; }; QRIpkg = derive2 { name="QRIpkg"; version="0.2.2"; sha256="0xqc72p3jm61kifha77c8sfk7b1p7cfdskzkm29w4j06009qd8a8"; depends=[ggplot2 quantreg]; }; QRM = derive2 { name="QRM"; version="0.4-31"; sha256="15dyk3zfy92vj4xny04dh5mqcyb8qh61566m313qs17mxwibvn2a"; depends=[gsl Matrix mgcv mvtnorm numDeriv Rcpp timeDate timeSeries]; }; QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; @@ -3741,7 +3755,7 @@ in with self; { QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.4"; sha256="17f2xmgklbi8kicv7v951zm3bf1q4bdx9lcfbxpac3i7xm985fgr"; depends=[data_table doParallel foreach glmnet lars MASS openxlsx qtl Rcpp readxl stringr]; }; QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="2.1.1"; sha256="0a155vl869i3li2i67b89p056x50ycqp9yk0ll5g3fp3xcdl80zs"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl QTL_gCIMapping Rcpp shiny stringr]; }; QTLEMM = derive2 { name="QTLEMM"; version="1.1.3"; sha256="1f0mb2v785qmjk7w6bmc0028q9rfm45i1abmpcbwq4qj1lb4s8zc"; depends=[mvtnorm]; }; - QTLRel = derive2 { name="QTLRel"; version="1.11"; sha256="1ylqzccjrysg7mhyphgzfbbdm7ylpvzjq02lirng1kbm1b8dxiyy"; depends=[gdata lattice]; }; + QTLRel = derive2 { name="QTLRel"; version="1.12"; sha256="1cc89z8yzvxcyx85q0bdn8c4y73db7i81pzqjhw8yssmkhxjwgww"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="2.0"; sha256="1g87763x5dzjlbq15wrpv46pgv5ds8gf9c4pqjj3l43827wzqxpb"; depends=[doParallel expm foreach MASS Rfast]; }; QWDAP = derive2 { name="QWDAP"; version="1.1.17"; sha256="1yq2xm5a1im8g65j89d6xqfbknlrpfh9lpm1ggmn5fw8wq4519ni"; depends=[CORElearn pls Rcpp RcppEigen]; }; @@ -3775,7 +3789,7 @@ in with self; { R_oo = derive2 { name="R.oo"; version="1.25.0"; sha256="1vxy8yw4yblb3vgl64yh0b6zf1d51rnc2c23kmyyw629fxhr1cdq"; depends=[R_methodsS3]; }; R_rsp = derive2 { name="R.rsp"; version="0.45.0"; sha256="192x8cvna1j0sx37xh3ha8bjjyx39pn5wnxzn5gs3z5j93a4d055"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; R_temis = derive2 { name="R.temis"; version="0.1.3"; sha256="1qa381fv1hxd1fv9d22772aibiia6m2ycm69znjy3ah2w986hjfh"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; - R_utils = derive2 { name="R.utils"; version="2.12.0"; sha256="00v5hpdid6h1yiwpf631xf1dk1z6dcx7dx83qn56a7pa4194bpkl"; depends=[R_methodsS3 R_oo]; }; + R_utils = derive2 { name="R.utils"; version="2.12.2"; sha256="0dl8rc7s7vg4g2pkmrwwqx7dkm02096jk439x4s0cm21hsmg2g7y"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-10"; sha256="10ynx3qrw2nr5zd5zws9sbr5qabx6f9i7y7isi915hrqpfddf1pb"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.3"; sha256="0klfaab1abfq662p5c93h6y222nqphhq6m65hdjms04gl44bk3ww"; depends=[]; }; R2Addhaz = derive2 { name="R2Addhaz"; version="0.1.0"; sha256="1xaqbzq2chsgkg1gc163fq8qcgzq9wwn2bm4mwvc31ay0gg4f3xi"; depends=[ahaz caTools pracma Rdpack survival zoo]; }; @@ -3785,9 +3799,9 @@ in with self; { R2HTML = derive2 { name="R2HTML"; version="2.3.3"; sha256="12qg9rp1j26h2f48dfg5k9jds26ycacv3f3ymk686ks43hd1hzja"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-7"; sha256="1r12b0gy5747acn0jyf3n2f210a51pgl6vkk1rd4fbbj0dk5bwmf"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2.1"; sha256="0689aqa034xkbyy46m3sjanjkxrii4ma1crm5qw5kaqbx7dg153c"; depends=[boot coda]; }; - R2SWF = derive2 { name="R2SWF"; version="0.9-7"; sha256="1pr3klgb731zwhwkz2c0wj2mvhy5qixzg1x451ik683ycni81qlw"; depends=[sysfonts]; }; + R2SWF = derive2 { name="R2SWF"; version="0.9-8"; sha256="1nlb2fshc5g53yqbq92z899mv9rknwah0p0s2l5r0rzp3v2np5yd"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; - R2admb = derive2 { name="R2admb"; version="0.7.16.2"; sha256="1gwp850ff76lqqn6amj75rjqb1szk6x2vlhqgwng4z45i56bmdf7"; depends=[coda lattice]; }; + R2admb = derive2 { name="R2admb"; version="0.7.16.3"; sha256="1sv20hkgz3vvqkwzj7i2xn7sb8skzhdl7jnrk85m6zza65917f32"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.7-1"; sha256="0si2f0lmnpjcsmy54k51kwj1fkx24dshiidv46h8j2xjq1hp429v"; depends=[abind coda R2WinBUGS rjags]; }; R2sample = derive2 { name="R2sample"; version="1.0.0"; sha256="1gvx4npmqnfpl11wvhslm0icwj0alg9bzwvv00acawcv04jv10yz"; depends=[ggplot2 microbenchmark Rcpp shiny]; }; R2ucare = derive2 { name="R2ucare"; version="1.0.2"; sha256="0940c9zw3fifs7m4hrx9aqv4d56q3263bl12lzk2mx2sfjp9rzlw"; depends=[RMark stringr]; }; @@ -3797,7 +3811,7 @@ in with self; { R62S3 = derive2 { name="R62S3"; version="1.4.1"; sha256="0g01izg77spn79xqwva2gzrvk66i20xlb789wl5rgcz7pz7gpjd2"; depends=[data_table]; }; R6DS = derive2 { name="R6DS"; version="1.2.0"; sha256="0ai1yqfhn634vm88waxdb6j24vwcna29gdqzdrwm0nxwf7l6g0m3"; depends=[R6]; }; R6P = derive2 { name="R6P"; version="0.3.0"; sha256="18qy69zwyzp27fiqlplcjh0034d2pn9dhnfkraarh4jxnbi7masm"; depends=[collections dplyr purrr R6 stringr tibble tidyr]; }; - R6causal = derive2 { name="R6causal"; version="0.6.1"; sha256="0ykwcymqzjcvin6agy5yyzjw484rz4zmhajq0w3dpd8hgy8vyclg"; depends=[causaleffect data_table dosearch igraph R6]; }; + R6causal = derive2 { name="R6causal"; version="0.7.0"; sha256="17dfr8gl83qsarj538zd4010mhp5lzgd9awasq1x4yb4973q3sv1"; depends=[causaleffect data_table dosearch igraph R6]; }; RABR = derive2 { name="RABR"; version="0.1.1"; sha256="1ckh0cw5xaqbzx8f7i6lsbspblfm0mmmadaifmln2rz3vr0hf1f4"; depends=[asd cubature data_table doParallel foreach ggplot2 multcomp multxpert survival]; }; RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; @@ -3815,7 +3829,7 @@ in with self; { RAT = derive2 { name="RAT"; version="0.3.1"; sha256="0234z9a1aqhdfwm6k3g8vw88dwx9n1d1mnnxl1y5qslv429kf23v"; depends=[ggplot2 mapproj stringr]; }; RATest = derive2 { name="RATest"; version="0.1.10"; sha256="019jcwb62w7da2hfys7xhfdxcywj6qn9pd2x6l61704n7bjj0s20"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; - RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; + RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.7"; sha256="0a6wnx87cizs3cfx94mczf8cm7hwkn9rfckmk738cajgs4ahnwwr"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.2"; sha256="02k0l8bi849b2102ysb102xky4p84i9v2r4w6fab7bgf32wvph4w"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.3"; sha256="04hxqwi75npayd3ghghswxc51k2xb525drixxk1fvp6hrhdkap5h"; depends=[unix]; }; RAthena = derive2 { name="RAthena"; version="2.6.0"; sha256="1i4jp10qlnpg9acq6jh6ypd8n4kix05czazm7qwdpppvmv1s6vj0"; depends=[data_table DBI reticulate uuid]; }; @@ -3823,7 +3837,7 @@ in with self; { RBMRB = derive2 { name="RBMRB"; version="2.1.7"; sha256="09x7zaigflc0d3pbdrvfv1kdklrlzgd4v2ma3dcr96l36n1iqqns"; depends=[data_table ggplot2 httr plotly rjson]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; - RBaseX = derive2 { name="RBaseX"; version="1.1.1"; sha256="03p0c89pcx3inxa4qlyhvf3hm48rfp5j46b0qkszm96yf3g2b01m"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; + RBaseX = derive2 { name="RBaseX"; version="1.1.2"; sha256="1f7lgfsxwqjplv8kk81sw3zmwqi9kxc8g328ylb2c2hiyq4fg49k"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; RBesT = derive2 { name="RBesT"; version="1.6-4"; sha256="0i9i1hifr7ljccmr3rd1rxfngimwdr88njr7lqba179g87jg1l42"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; @@ -3856,7 +3870,7 @@ in with self; { RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.98-1.9"; sha256="1iff8cbfrz94mp1m82ai448zhipm8xv6zlxmbysd5hsycxqli3gj"; depends=[bitops]; }; RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.1"; sha256="1ppxyrm9h09kk6lnr6yg3n3xl08l9zp4rqliz92k5h42hmgj6f02"; depends=[rjson]; }; - RCzechia = derive2 { name="RCzechia"; version="1.9.4"; sha256="048421nv41zny9mk9l1v59hn3nlci5rcvq3yq2277jj2phsh09kp"; depends=[curl httr jsonlite magrittr sf]; }; + RCzechia = derive2 { name="RCzechia"; version="1.10.0"; sha256="1pda05ykbqa2nskgvlq3mn2m8ag1daq7c002adlrnvs21db7q6rz"; depends=[curl httr jsonlite magrittr sf]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDP = derive2 { name="RDP"; version="0.2.3"; sha256="0fmssv33lxfxk61609dd7865n9w7i6wlap9g5aaa2b0319sbclpd"; depends=[Rcpp]; }; RDS = derive2 { name="RDS"; version="0.9-3"; sha256="0kcq5ym6l80shzxf9zv2rwb84r0q9qr2cwimcg76r97sfx7c2kp2"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales statnet_common]; }; @@ -3872,7 +3886,7 @@ in with self; { RECA = derive2 { name="RECA"; version="1.7"; sha256="1xikj20flqajpkw4wyynmqd1pafbylzwfrmc8bz9pqgggjjhrqql"; depends=[]; }; REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.2"; sha256="0w7c1y58vnkbd11ndkcn5s5c54pmvyqhflwgg2q6dc3n671yp9wx"; depends=[curl data_table keyring lubridate]; }; REDCapR = derive2 { name="REDCapR"; version="1.1.0"; sha256="02d41mbplc7fb0yf6sf62fzfzai95vjqxhz2hkz7135w17s31j8r"; depends=[checkmate dplyr httr jsonlite magrittr readr rlang tibble tidyr]; }; - REDCapTidieR = derive2 { name="REDCapTidieR"; version="0.1.3"; sha256="1s479fcxgm5wmk2jf8psi921q8vzhv3zjqs5lsakjjfahj7md4gh"; depends=[checkmate dplyr purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; + REDCapTidieR = derive2 { name="REDCapTidieR"; version="0.2.0"; sha256="1hgxj0vp5k9hc1fids2379qkja0s3jankiqvi9pm7h4gvk33p7fx"; depends=[checkmate cli dplyr formattable lifecycle lobstr purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.4"; sha256="11m9k6xli3gqw2f9vwa9abpwsnxawi675zmi916yq2shws49m8xn"; depends=[nlme rpart]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; REPLesentR = derive2 { name="REPLesentR"; version="0.4.1"; sha256="0rwd7hxk12f4f1kpj6sl424yhbxi3h9dz6km5awijazmgv95carz"; depends=[dat knitr modules]; }; @@ -3880,7 +3894,6 @@ in with self; { REPPlabShiny = derive2 { name="REPPlabShiny"; version="0.4.1"; sha256="0wim27jm01xbi316jfz5j30sid7z1wsznhrpmxrbd97d4312449w"; depends=[DT REPPlab shiny]; }; REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; REQS = derive2 { name="REQS"; version="0.8-13"; sha256="1yzd37kqkg477p501l6s8iah9pkjsnsbxmk32w0rji7jpj7r2rs5"; depends=[gtools]; }; - REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; }; RESI = derive2 { name="RESI"; version="1.0.5"; sha256="1synv78b06v552glpj15jc5cfa5i5i8bcn1hqyvsv4d5d94qj4i3"; depends=[aod car clubSandwich lmtest nlme regtools sandwich]; }; RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REdaS = derive2 { name="REdaS"; version="0.9.4"; sha256="1bi04zaqg4plp1byspn97lrlny47l521y1jhiixy093g6p6lqj11"; depends=[]; }; @@ -3890,6 +3903,7 @@ in with self; { RFCCA = derive2 { name="RFCCA"; version="1.0.9"; sha256="15zabdqkgji58yxh3nndaj8ipap8av353d0cvx54y2gx7cxlmdf3"; depends=[CCA PMA]; }; RFLPtools = derive2 { name="RFLPtools"; version="2.0"; sha256="07hw0hyyxqy31qakkb410gb3i0g5jvpmigv5cqhxqss2cwzpch0d"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; + RFPM = derive2 { name="RFPM"; version="1.0"; sha256="1rhi1nn1xxc5qvxk2vwd96325pqwz45b2bvaq994glvlxniki3c1"; depends=[dplyr lawstat reshape2]; }; RFclust = derive2 { name="RFclust"; version="0.1.2"; sha256="04cynwsfs07j6kbpnpk4kx7p2a33y5qylpvydv29975z7p871vsm"; depends=[ConsensusClusterPlus randomForest]; }; RFishBC = derive2 { name="RFishBC"; version="0.2.4"; sha256="1wh1j5lciff1vgjwrmc2hhr0yfq289l6k917pzhpl5bk6r4ml0fs"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; RFmerge = derive2 { name="RFmerge"; version="0.1-10"; sha256="1gcdd0a0czimzmzq2izskdaj26cc7qchrwlhssvnh5k59yx54r4l"; depends=[pbapply randomForest raster sf sp zoo]; }; @@ -3918,7 +3932,7 @@ in with self; { RHMS = derive2 { name="RHMS"; version="1.7"; sha256="1fld5y39a4xq40wh23944ngcrkqk2pw8w9raxir9wn2z2nysr7zg"; depends=[GGally ggplot2 Hmisc network pso]; }; RHPCBenchmark = derive2 { name="RHPCBenchmark"; version="0.1.0"; sha256="1f94d8z15ybqgc2pccsi1m6563xf26ygri6f4pwxkqjmxkxnk34y"; depends=[cluster Matrix mvtnorm]; }; RHRT = derive2 { name="RHRT"; version="1.0.1"; sha256="0km93m1bgh64r174bm5pj2hhsa39kghjrzjlmpdrxr9wa1z8wdni"; depends=[]; }; - RHRV = derive2 { name="RHRV"; version="4.2.6"; sha256="1rdfq1xnimli709waypwhw1v277hxhmiy7ziizgqi4522nip4h49"; depends=[lomb nonlinearTseries waveslim]; }; + RHRV = derive2 { name="RHRV"; version="4.2.7"; sha256="0w4r2sk1h9wxmhs5l2dk9gzr85wrss3m4qi67mj37cjd4qmmn1wi"; depends=[lomb nonlinearTseries waveslim]; }; RHSDB = derive2 { name="RHSDB"; version="0.2.0"; sha256="0k23vdb9p2c2hnac8rk2dnls47fw5qc66ifhx47q8myi1479vvll"; depends=[]; }; RHawkes = derive2 { name="RHawkes"; version="1.0"; sha256="1ishfdbyk9g6lh5q6apbaw7vh9cfwyykag27imrfpx3c40sbwmd4"; depends=[IHSEP]; }; RHclust = derive2 { name="RHclust"; version="1.1.0"; sha256="1i28bxkgdxlc216vsgambzc027wjnw0iaibry6m1vz9as2yy1fry"; depends=[Runuran]; }; @@ -3926,9 +3940,9 @@ in with self; { RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; RIA = derive2 { name="RIA"; version="1.6.0"; sha256="0vj92plwmklb0i9h6zr18dnfwi3p7wkajjjxg0vfvm4pps9pkfwp"; depends=[nat oro_dicom oro_nifti reticulate]; }; RIFS = derive2 { name="RIFS"; version="0.1.6"; sha256="0cbz2vg8adqjkbn9r8cikqxlzhk01ba3nlnh8rqbwdcpiz90l1ip"; depends=[]; }; - RISCA = derive2 { name="RISCA"; version="1.0.1"; sha256="1r58s8ss64l7pckc5k2sqdsnp4kq2aagclbj5dxw6662y159m84d"; depends=[caret cubature date doParallel dplyr dvmisc flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC zoo]; }; + RISCA = derive2 { name="RISCA"; version="1.0.3"; sha256="0r4wcyfa4nx9473hacm4dpz374zbp23idgbyanl6wcaw4mx085v0"; depends=[caret cubature date doParallel dplyr flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC zoo]; }; RISmed = derive2 { name="RISmed"; version="2.3.0"; sha256="0vpi88gzi9r85v6nhjz9jbw671zkrmyazwna2z881346wfyr3l8b"; depends=[httr xml2]; }; - RIbench = derive2 { name="RIbench"; version="1.0.1"; sha256="0l42yf2gzsi1c46gijc7581bdc856345ylsw10acmzhhhlj16sw1"; depends=[data_table digest optparse RColorBrewer]; }; + RIbench = derive2 { name="RIbench"; version="1.0.2"; sha256="0dfxwcm3q8bgwprv0vn440w3186g04a4rm4i33pnpvg2c0qph0sp"; depends=[data_table digest optparse RColorBrewer]; }; RIdeogram = derive2 { name="RIdeogram"; version="0.2.2"; sha256="0wvzlnisnxwzdzfh8ph4yspr8abi5qk6p4z2qa14ykzn8yry61ni"; depends=[ggplot2 grImport2 rsvg scales tidyr]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.2"; sha256="1rsc8iv80zyjzpj80yyyhndxvskdbldsfc2gskrr1r8yh5gmhn23"; depends=[spatstat spatstat_geom]; }; RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; @@ -3937,11 +3951,11 @@ in with self; { RInside = derive2 { name="RInside"; version="0.2.17"; sha256="0j23h8qxqn95d0hqx9wcb52hc8w9qacjnk96lxlsdjrlxr28rqhb"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.3-1"; sha256="07i08cjscdylxbxl53qvr38pagssiqx3zcd0gyj28w0n6k3rq10x"; depends=[abind dplyr ggplot2 SparseM survival svd tibble tidyr xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-10"; sha256="06b2gw76jwmm3lw3knmn6slc6824d4gzry94n96d97ii4fm4gwrp"; depends=[DBI rJava]; }; - RJDemetra = derive2 { name="RJDemetra"; version="0.2.0"; sha256="1l97zicd0n3kvyjcrfq09wc8wawnfrs59n5nrx6s2dzh3cvyxvxr"; depends=[rJava]; }; + RJDemetra = derive2 { name="RJDemetra"; version="0.2.1"; sha256="1g54kzfb97zba5898bz90cba5nyjkhd00hw3azsaic6xa7dwz5gr"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="2.3-3.1"; sha256="1sp20dcg6d0yrmllqsh486v8frgi9bssd8zibc9165y5v8yjg9y6"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.6"; sha256="17x0ayk7daprbc8w2hvb2jl9mfnw4dic9yc3sr5adcjqfzmcklc2"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; - RJafroc = derive2 { name="RJafroc"; version="2.1.1"; sha256="1rv1daz1d5iak5s71ldvdqwcrxzgfzd2cl27hgd9y2spwfk81fns"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; + RJafroc = derive2 { name="RJafroc"; version="2.1.2"; sha256="1immjb2313ss7pc61m3y59h6m3i0257lhvrkkvhrprl9jsyanfca"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; RJcluster = derive2 { name="RJcluster"; version="3.2.4"; sha256="157dmi5gksq7s16ip4n9j5bj9s9bawl078rh13s1xxyr6f51yp09"; depends=[foreach infotheo matrixStats mclust profvis Rcpp RcppArmadillo rlang]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-4"; sha256="1j4643xc8k3zy4rv0h8dd154jafihnjr43wzz3d93j11g2w9xhq3"; depends=[rJava]; }; @@ -3973,6 +3987,7 @@ in with self; { RMOPI = derive2 { name="RMOPI"; version="1.1"; sha256="0jjli73b1xinrkq0fndfaan1mgf6yb29skqvva4lib0zgd8p1v21"; depends=[fPortfolio ggplot2 lubridate MASS PerformanceAnalytics rugarch tibble timeDate timeSeries TTR xts]; }; RMPSH = derive2 { name="RMPSH"; version="1.1.1"; sha256="0jffp8942ydwain23kvy7q6avpxxsb77jj1mg4bq43fwgfc9nqjy"; depends=[Rcpp]; }; RMSNumpress = derive2 { name="RMSNumpress"; version="1.0.1"; sha256="1y86dpa8kpq2bkvl90qwghxrnll5h3y9ycyvmamm4kd7ivy59sxi"; depends=[Rcpp]; }; + RMT4DS = derive2 { name="RMT4DS"; version="0.0.1"; sha256="05fwhd36lvi21gr5nz8mgxk5qzw4vxkrgw499p11aa9qhcn8xq4g"; depends=[lpSolve MASS mpoly nleqslv pracma quadprog rARPACK RMTstat rootSolve]; }; RMTL = derive2 { name="RMTL"; version="0.9.9"; sha256="1wyv9l1xgdm4s8ibjw3kwfsr77hxkxj80cgvkfv4mdir0bxm84b4"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3.1"; sha256="1r1a2sdqv64m9cpm2pz6r8abf7l810126ayd8iq3gx86c7bjfj5v"; depends=[]; }; @@ -3985,7 +4000,7 @@ in with self; { RMixtComp = derive2 { name="RMixtComp"; version="4.1.3"; sha256="0v1qhqvl0s2b93xhykjr99h5gbz48l9npp0vyazh0ncx8gnxrzfl"; depends=[ggplot2 plotly RMixtCompIO RMixtCompUtilities scales]; }; RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.8"; sha256="0q8k8arnrgwvrsl6f2p0a53vk5krynwgjfsdp71z9c1wjq22zsa3"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.4"; sha256="1rhdmiap7xm96igclas67dz8naywjkddydbk9m3hp0d0zhgblc5i"; depends=[ggplot2 plotly scales]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.24"; sha256="0hbjcf0gzkkg8h50msj4a6ymax9s3j4aw44jl1mqcxkdmfn9l6ya"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.25"; sha256="1527ba5vqg4ss6rqxrkxa1a66r1m9h4zmdnv9xdzva8fv2dhy4zd"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.4"; sha256="0f9k3ba2w75sjywngmvp7g10837wx65v112inpag3rplk9ljahvp"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats patchwork purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.7.0"; sha256="13biayrgs9qb06w3rkwrmplnrm93zlygsfm7chy6jbp15xl3bf0c"; depends=[circlize RRNA]; }; @@ -4001,8 +4016,8 @@ in with self; { RNetCDF = derive2 { name="RNetCDF"; version="2.6-1"; sha256="02llp0ar5i81lxmsr1iznwhxk37ihkplbyi7f0za2dnqp1b0qrwz"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.2.6"; sha256="06hz5fim5ad8kbpc4crs9vdn7k9q5phhzscd46s4xk0b3n0i8wi1"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="1.4.1"; sha256="058jzhw91wd4hb9l06mn0ihf1yp2fapz1fyb32w9bjwxq7qxvii2"; depends=[Rcpp]; }; - RNiftyReg = derive2 { name="RNiftyReg"; version="2.7.0"; sha256="0y7s2zcjjnb9jakdhyd6hmdj9axdpvbnhijs2finnlwc0d09jpz1"; depends=[ore Rcpp RcppEigen RNifti]; }; + RNifti = derive2 { name="RNifti"; version="1.4.3"; sha256="1w627brzag9laxsfrr1kxh07glycl8l1n5xf5frn8m0jzvrn3d50"; depends=[Rcpp]; }; + RNiftyReg = derive2 { name="RNiftyReg"; version="2.7.1"; sha256="1hmcd89c1qw6zyhshz1myyf2xjwhz5gl3hr46nny5qgh3z4ylyb1"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROCFTP_MMS = derive2 { name="ROCFTP.MMS"; version="1.0.0"; sha256="022cz5vh79c50r31rxn5fjghl65wn1ns8xdgq3b05hjf9psjvg4x"; depends=[vctrs]; }; ROCR = derive2 { name="ROCR"; version="1.0-11"; sha256="0amvvrkiflmr3qygrsgrsja4gaf2v6r6h6i2bgpsm8r069vmlf2p"; depends=[gplots]; }; @@ -4013,7 +4028,7 @@ in with self; { ROCket = derive2 { name="ROCket"; version="1.0.1"; sha256="1p5b1408fdq8z64b7ihwcdxprg5rfiq4z5annxzvmizzr6qwn8qa"; depends=[data_table]; }; ROCnReg = derive2 { name="ROCnReg"; version="1.0-7"; sha256="09v7qi5q5m969j1g6fwgb4nsls60vcfrz1z1v111mv9dzq85dxxp"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat spatstat_geom]; }; ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; - RODBC = derive2 { name="RODBC"; version="1.3-19"; sha256="1zjf5mfv906kxy4cn2l10z35l7m5878aqjx9yj6pr2ydfxlbvz1s"; depends=[]; }; + RODBC = derive2 { name="RODBC"; version="1.3-20"; sha256="1mpv2315jbbg085wbrgzvlk11apkn32slq3j4jjbw0i5rb8pn5bz"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; ROI = derive2 { name="ROI"; version="1.0-0"; sha256="0hd3l219wanhanbf4pgrh1pbxah50gf5qg2gff1djdr1xns7zn5h"; depends=[registry slam]; }; ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1-1"; sha256="1zj636cmjhhqbn6hh6760bi5y8lf6y7qqkz72yijq7dj2y1za2ph"; depends=[globalOptTests ROI]; }; @@ -4040,11 +4055,11 @@ in with self; { ROOPSD = derive2 { name="ROOPSD"; version="0.3.8"; sha256="0bndjhnshifbx02scw7d48wszar51vyv735a2r0chzq7qjj7drc3"; depends=[Lmoments numDeriv R6]; }; ROSE = derive2 { name="ROSE"; version="0.0-4"; sha256="0y3v9zkgaxpv4f4zn22ra1gkkqg5hdz8js47ppciqahfydjbfl3p"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.60.2"; sha256="1k9s5irb1k01f7y5islyvh6wm23fpys7wzkqgv2zgbmvqqaxj7ji"; depends=[pkgbuild]; }; + ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.60.3"; sha256="1529c5wnz7y50pzgq9m7gg7p2pmasdzpyqfmab6zxg87bmab4y61"; depends=[pkgbuild]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; - ROptEst = derive2 { name="ROptEst"; version="1.2.1"; sha256="0gjdgynmg8499jm5gbnmjipnn1bl7h1rja8lhgbaw48lmq5sr801"; depends=[distr distrEx distrMod MASS RandVar RobAStBase startupmsg]; }; + ROptEst = derive2 { name="ROptEst"; version="1.3.1"; sha256="1p0aapqyb22z48b44yh88wzrn36bq9djdajgrc0w5z1p0kj3vq0b"; depends=[distr distrEx distrMod MASS RandVar RobAStBase startupmsg]; }; ROptEstOld = derive2 { name="ROptEstOld"; version="1.2.0"; sha256="08njyxb8bnjb9nas3szqvqkfv83lc0187b7biis2nl2rgq6rljzy"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive2 { name="ROptRegTS"; version="1.2.0"; sha256="1wy54kjrpfvj2k9ndmq27zzgx6aygh85f7c83g7gn8d5b2y91qy4"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptSpace = derive2 { name="ROptSpace"; version="0.2.3"; sha256="18fz285hr4fdkkbs4b13gmwz0sqbgk6di6m3c6ic0wvs35mpmcfz"; depends=[Rcpp RcppArmadillo Rdpack]; }; @@ -4063,9 +4078,9 @@ in with self; { RPhosFate = derive2 { name="RPhosFate"; version="1.0.2"; sha256="17905kbi8mh6356kkn5slyqk6r134j28ipk0sdv0y1jxrgjdyvzq"; depends=[checkmate hydroGOF raster Rcpp RcppArmadillo spatstat_geom yaml]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-4"; sha256="1ijnsly8wgy6cfib4xvdaz2g9hk1gzg7q52r37zkvc7jjh0gdbdn"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.4.4"; sha256="1z6diaq4kwinl97d1v9cb96j8mrkj2s2v4ml1vykgy1jqi40dk69"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; - RPresto = derive2 { name="RPresto"; version="1.4.0"; sha256="1w6wq4j6c4xdsr0n5yf8fcmgm5yp2nsfydi4zdi1s7chkhr9y50d"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; + RPresto = derive2 { name="RPresto"; version="1.4.1"; sha256="04xvy6mnmi6aymwm7wp97i85q7hh80fkjibjnbpi76i0lpa06wzh"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.19"; sha256="0iwaclf5xh4792l7pmp64y9lymq1jy8dv6byc0059jak1p7wsyb3"; depends=[Rcpp]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.20"; sha256="1q5wd586334472584r93whnwxy4yyycn9l891g6m6wh7v0884q76"; depends=[Rcpp]; }; RPscoring = derive2 { name="RPscoring"; version="0.1.0"; sha256="063w83k9krwv3wvw2iq8bqkhjaj26as14d9g99l8jxfc02ljv1rr"; depends=[]; }; RPtests = derive2 { name="RPtests"; version="0.1.5"; sha256="04j4nqy2qxn1pa8ar0j0wgzkpd624983wwhd73l1ax7fnskx0yhh"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; @@ -4084,9 +4099,10 @@ in with self; { RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; RRphylo = derive2 { name="RRphylo"; version="2.7.0"; sha256="09d3nbm47rhn9z0s5x4ly541m3b3hcsfsxd1dnrxkiqkyjy7c4h0"; depends=[ape doParallel emmeans foreach phytools]; }; + RRreg = derive2 { name="RRreg"; version="0.7.5"; sha256="105hv4izzbm5b89mg1k99zkms8ppjafj6x2fvh71yhaszh79fh88"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.10.4"; sha256="0i0li587i6bjnmz9d1j1dyhpy7bfnq6298wr67fygcxfaszij16b"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; - RSAGA = derive2 { name="RSAGA"; version="1.3.0"; sha256="1y1zhy2bxkfsv8vmnxjdg9i5rqkvs32kw8h5z1mclv953srgkpn9"; depends=[gstat magrittr plyr rgdal shapefiles stringr]; }; + RSAGA = derive2 { name="RSAGA"; version="1.4.0"; sha256="0mdirx7d3z4l0k54wa6rb1c5gma470ypifd3flj2287m8y2wjqq5"; depends=[gstat magrittr plyr shapefiles stringr]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; RSC = derive2 { name="RSC"; version="2.0.2"; sha256="0d7b8q5r3sb29h3kj0dpd1ldm6lymqkpdjsg216m4lgqcikkng6l"; depends=[doParallel foreach Matrix]; }; @@ -4100,23 +4116,22 @@ in with self; { RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; RSNNS = derive2 { name="RSNNS"; version="0.4-14"; sha256="081c20dcac8xxb0sp7kwzm4b7h5jrgcxxsfckjbxbda95g5n4qkz"; depends=[Rcpp]; }; RSQL = derive2 { name="RSQL"; version="0.2.1"; sha256="10s71kgsa37m937lr7kai8c73iw5fwb9rnhkf65wz0w2qha01zaz"; depends=[DBI lgr R6]; }; - RSQLite = derive2 { name="RSQLite"; version="2.2.18"; sha256="1sjbjh4rhaagmhiv2rg3csakbsc62qwyawz5vhywg3mdcbdnl6b2"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; + RSQLite = derive2 { name="RSQLite"; version="2.2.19"; sha256="11jzg3ywzaql3zwp7cwql1nilz8pvbz903whyh0d447rs0xnn3vj"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.9.5"; sha256="1h94dhs5yl1i7n153rbmj883iz3hql0b0cr12357nk4nvf36yih8"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; RSarules = derive2 { name="RSarules"; version="1.0"; sha256="0lrql4q45hyhqbix86ixl12mknnjbz3137gx2zkvqpz91bsk145j"; depends=[arules Matrix]; }; RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RScelestial = derive2 { name="RScelestial"; version="1.0.3"; sha256="1bxp3xl90s9fblm6d2mmsnws4iv9f3kxj8cs55kmbakz5dq4nqxc"; depends=[Rcpp]; }; - RSclient = derive2 { name="RSclient"; version="0.7-8"; sha256="0iy2y63yl35im6n8hg77gzfr6mk7z4yi4lpl50mig1jj9rvqw3n5"; depends=[]; }; - RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; + RSclient = derive2 { name="RSclient"; version="0.7-9"; sha256="04xppfz2gxf21jmcz9phxpaxys06kqnw77v1sy9qqd3n0yywzihv"; depends=[]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.9"; sha256="18hd0gfpblg9ij99ik7ccc60q9dxha89n5rrwrrzx498c5sscjg2"; depends=[caTools httr wdman]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; - RSiena = derive2 { name="RSiena"; version="1.3.13"; sha256="0rc56g4f75s4nxmja4117mhynwh340kidp0amm2jdm1gda9wwp32"; depends=[lattice MASS Matrix xtable]; }; + RSiena = derive2 { name="RSiena"; version="1.3.14"; sha256="1g36l9j68d4lgwx5m67ccny7kjjv3lk5lxqawv1pz1l0d4vdmhsd"; depends=[lattice MASS Matrix xtable]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.16"; sha256="1plcmxj6sahdy3vvcmxry8cbq1j23bqzhnhn593bkwmzczka24cy"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSizeBiased = derive2 { name="RSizeBiased"; version="0.1.0"; sha256="0qh1f9998c62cph590mszbwh12mpbvcnvffmxw4mib6wd4dgl723"; depends=[pracma]; }; RSmallTelescopes = derive2 { name="RSmallTelescopes"; version="1.0.4"; sha256="16c0pfq9qp0c9b7aljp753iilk3dys14h77anwps8xg7j2lizvbh"; depends=[]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.3"; sha256="02zswadv65a5p5q9rr12f819mh7jjqk8xj1kc1c0wqvr8dgz7fx9"; depends=[RCurl]; }; - RSocrata = derive2 { name="RSocrata"; version="1.7.11-2"; sha256="0pwfz18931594n84b5l0y8bplqz5iw622ji4f2l9qkbg29jxq5gg"; depends=[httr jsonlite mime plyr]; }; + RSocrata = derive2 { name="RSocrata"; version="1.7.12-4"; sha256="07m8jp6av12z0csl4xln1y22s3nq0jwx7bk1brs3v0v38m86j86w"; depends=[httr jsonlite mime plyr]; }; RSpectra = derive2 { name="RSpectra"; version="0.16-1"; sha256="16ij84wgpsmqmnxqiii8dgihy3bfxazry9znmckhwzba7m0d79fb"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RSqlParser = derive2 { name="RSqlParser"; version="1.5"; sha256="0q5wa7bq7m94xx8hcf9p29v5vvkrqzygs3v6yy5xl6jgvshvscvi"; depends=[stringi stringr]; }; @@ -4125,18 +4140,17 @@ in with self; { RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.1"; sha256="02jbm9xl2jg9cgq53i1cvj1rivhprgd07k1rxsayzrskvbmvyjpd"; depends=[epiR epitools mc2d]; }; - RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RTCC = derive2 { name="RTCC"; version="0.1.1"; sha256="0bnm0qwikbbpq3i5q5fwmsgi8fn7w0xk993ngpiqbrf5my3h93kc"; depends=[matrixStats Rcpp testthat vegan]; }; RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; RTIGER = derive2 { name="RTIGER"; version="1.99.0"; sha256="018y0hs06cpmb2k74xdj0cnlzr9aljbizj5jf9h8frpn9p57d6rv"; depends=[e1071 GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; - RTL = derive2 { name="RTL"; version="1.2.0"; sha256="0k68505zs08l8gpn7f5r3la5f2053laganl8af3b8shi5ymqv68g"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr plotly purrr Rcpp RCurl readr rlang stringr tibble tidyr timetk tsibble xts zoo]; }; + RTL = derive2 { name="RTL"; version="1.3.1"; sha256="1ncbv5mk339xjf4jwbgz2bdxbv53rf9557krp9g1nazzcs1wlvjg"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr plotly purrr Rcpp RCurl readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; }; RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="3.2"; sha256="0nrj5iccxqj3nk28s9z6bncpih5zq2nz4pylmm0pkpl5dfz923m4"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.3"; sha256="0fxjviqc36k06rn8xzbi8ylzzj9zgf3zsp6xv0kssakss1a45lzz"; depends=[caTools e1071 glmnet ipred nnet randomForest SparseM tau tm tree]; }; RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.14"; sha256="0sy2jgdy8lmvazgyv196z327r14202243f5g8wl4nck737x0i7qh"; depends=[future future_apply Rcpp]; }; - RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; + RTriangle = derive2 { name="RTriangle"; version="1.6-0.11"; sha256="0m6r1k7ryl6nxxfkqhq2wrg6878yirp5mdmyaxpg8wxkribp7yr3"; depends=[]; }; RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; RVA = derive2 { name="RVA"; version="0.0.5"; sha256="1a0av2vhqnkc4w76q5dhds0p12icmkkxyr1d04rsd83srwkwh4fb"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; @@ -4162,10 +4176,10 @@ in with self; { RZigZag = derive2 { name="RZigZag"; version="0.2.1"; sha256="1civ8qrk5y95775vzkd2m5arqczgan584r632ixy4q76nd5wa8zc"; depends=[Rcpp RcppEigen]; }; RZooRoH = derive2 { name="RZooRoH"; version="0.3.1"; sha256="090mcy6czipvidprj87vyfb2wdipy08xjn130qzs5qdq9bnb6a14"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaJIVE = derive2 { name="RaJIVE"; version="1.0"; sha256="1r3csf3xpk6rx494bqamb9b8dhj1169cng6gdi52h62m8vchnak5"; depends=[doParallel foreach ggplot2]; }; - RaMS = derive2 { name="RaMS"; version="1.0.0"; sha256="101vdghn18w2cj8n5bm1gd81c298w2drs1d2sjaijkji7i74z2c6"; depends=[base64enc data_table xml2]; }; + RaMS = derive2 { name="RaMS"; version="1.3.0"; sha256="0428ys9mpw483g8i5cvnps7nhvcfg7iafma8vwf641hf7c9da0f6"; depends=[base64enc data_table xml2]; }; RaProR = derive2 { name="RaProR"; version="1.1-5"; sha256="11hwg609pjcd13qnbchbs86c3q8f4nmh1xfxg3dsiijljl6lzx3n"; depends=[]; }; RaSEn = derive2 { name="RaSEn"; version="3.0.0"; sha256="1a7jvyvvhzn4aifnhjldn5jr6sxh16b67x335p8wh8g24yvvglvw"; depends=[caret class doParallel e1071 FNN foreach formatR ggplot2 glmnet gridExtra KernelKnn MASS ModelMetrics nnet randomForest ranger rpart]; }; - RaceID = derive2 { name="RaceID"; version="0.2.6"; sha256="0kx56ibp4kf8k6m9mx2cgvra53wanfi7q99pwzlhcj7a3p2xs7yf"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve propr quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; + RaceID = derive2 { name="RaceID"; version="0.2.8"; sha256="0pfs4hf52xnb55pmcl3ypzqv77vn61v6q7485yr36agz42y6jmmg"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; RadData = derive2 { name="RadData"; version="1.0.1"; sha256="053i6r0j58dws1qisl2701n0fwzrfn5brdx3dcab8xmpzg6s0036"; depends=[]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.8"; sha256="0nc8f2f2yvfvx81xm87zr08asisyar9zdx3fwqz0lvz5xgrwkp3x"; depends=[oro_dicom ptinpoly]; }; RadialVisGadgets = derive2 { name="RadialVisGadgets"; version="0.2.0"; sha256="18a2c89jpdaln9cl5y4w161121fld08wm57m40qacsj1vlnkh6j9"; depends=[caret dplyr ggplot2 miniUI r_import rlang shiny shinyjs shinyscreenshot tidyr]; }; @@ -4179,7 +4193,6 @@ in with self; { RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; RandPro = derive2 { name="RandPro"; version="0.2.2"; sha256="092mm9gybvcby2n161nldlq8s2ja2bc43jnkln6ss3lr29rmi9b3"; depends=[caret e1071]; }; RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.5"; sha256="0bjfz3bla6pr7wq4mqqcd4gmxqdx32gci4f71arfski31yx8ihlc"; depends=[]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.4"; sha256="1viq8vv4f0l0ywcr9s1n1vk23a917yj35lgvrpac9rf0vvk70an7"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; @@ -4187,7 +4200,7 @@ in with self; { RankAggreg = derive2 { name="RankAggreg"; version="0.6.6"; sha256="1g70njfv776qgp3i52kr6yxg7x9qliqaj33jm5vkgbajw1ampsdx"; depends=[gtools]; }; RankAggregator = derive2 { name="RankAggregator"; version="0.0.1"; sha256="0j4s4fv28fbc6ij6fzpmza9n5lfrql8ll33fi65vhczz9pjhpjii"; depends=[]; }; RankResponse = derive2 { name="RankResponse"; version="4.0.0"; sha256="1i686wgqz8pxdjsgyqr9i8fq1779h3jpzzrmh407pknawyii1vmy"; depends=[]; }; - Rankcluster = derive2 { name="Rankcluster"; version="0.94.5"; sha256="1ddfcmiqy20s7sfjbxax0rvc9vb1ckr46icy1zsa103hhbp5pjqb"; depends=[Rcpp RcppEigen]; }; + Rankcluster = derive2 { name="Rankcluster"; version="0.98.0"; sha256="0lipl57xx6ik66579vmhammy86iwjlnc7qmkjn9xcj3prkqy5p2i"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.4.0"; sha256="11i47arl3r32iky29wjawb26g0hiji0ddl70gcrcy8v9j0h01vap"; depends=[]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; RapidoPGS = derive2 { name="RapidoPGS"; version="2.2.0"; sha256="0p19jc7cn2s8nnc0nblbl7k42srgm1risxggzb2rd1ngr93z757p"; depends=[bigreadr bigsnpr coloc curl data_table dplyr GenomicRanges IRanges RCurl]; }; @@ -4199,9 +4212,9 @@ in with self; { Rata = derive2 { name="Rata"; version="0.0.2"; sha256="1s7am08691lil5hbd8jpa5wnbvr0qqf0gkxczpm6yvizbjpx16qx"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2 Rirt]; }; RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.4"; sha256="1d37l4xgg1iba2rbhp4c5i7igrcy0zgbdvzk3yc0wj2x1mm5dayk"; depends=[ggplot2 pROC]; }; RationalExp = derive2 { name="RationalExp"; version="0.2.2"; sha256="0a51sfps3sfb71m93jdsmbvj6kafbyfrq790ix238j570f5xafpg"; depends=[snowfall]; }; - Ravages = derive2 { name="Ravages"; version="1.1.0"; sha256="0fabwbrkgj48m0hgq2s2c3ah7r7xbbbkz4svrkfb2jpaw2dq8vhk"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; + Ravages = derive2 { name="Ravages"; version="1.1.1"; sha256="1lkdw9ilkrsa6zc7s3ljjnjzjwhxfy0w9p6jlqmrj9j81kydyxbz"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; RavenR = derive2 { name="RavenR"; version="2.2.0"; sha256="17m6q6v3s3maj3wlic9id4bll4n3waa34sj8580l1kd5knhybmil"; depends=[colorspace cowplot crayon DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; - RawHummus = derive2 { name="RawHummus"; version="0.2.2"; sha256="04lj7dxfz7hhcwlwbigra2sgf1aafmx88169mdsw381m9c29xaj2"; depends=[data_table dplyr kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyFiles shinyMatrix shinyvalidate]; }; + RawHummus = derive2 { name="RawHummus"; version="0.2.3"; sha256="0g20qlv9vij6cw8b3smg26i0qxh83w9z4gvnpp9h0sc2qg4incr1"; depends=[data_table dplyr kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyFiles shinyMatrix shinyvalidate]; }; Rbeast = derive2 { name="Rbeast"; version="0.9.5"; sha256="0b0arw8db731lpym28v98gc28ka4c94b50blh3zps84ydbd3ql4w"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; @@ -4226,8 +4239,9 @@ in with self; { RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-1"; sha256="1snlzffs9f300iyxsbarykc53pfa8h9qsk354xki7n0wz5jp1lc3"; depends=[DCchoice Rcmdr]; }; RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.1-2"; sha256="04c6xig7a8rbwy1cwahxxk5x5vzdijrq0dl2hr8dlivpyv2pjq73"; depends=[Rcmdr support_CEs survival]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-4"; sha256="0iwl2g1xjr30xdgpy7wiw5c6j0amag57ia5qvcpgxwj3pnyxa2lx"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc]; }; + RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-3"; sha256="0v7pw0m8cxpnkdm47b8jb3z94p1igi98s4r8i0gm7x7ad4fzccww"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.60"; sha256="1wamdlhd2zi5ykd5f32is4n4nwn26h6dldvxnnd5k340wvd30bhn"; depends=[Rcmdr readstata13]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.61"; sha256="1d97lans5w14scfn4z0nxpgfdlmspbzq2c6vl02pf5z3rrqfnbrq"; depends=[Rcmdr readstata13]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.7"; sha256="1145rpzhq219sl0j2bg5xa0ihq13lmr7ahcn3db4a8mqlz2fp8zy"; depends=[FactoMineR Rcmdr]; }; @@ -4262,15 +4276,15 @@ in with self; { RcppAPT = derive2 { name="RcppAPT"; version="0.0.9"; sha256="03q2i1b9lrb0sn0vq4jyqjiy2zwi2ydhzlnw1b8nj9xdfxx804mx"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.6.0"; sha256="11dvh0ba3chsqf3vw8g9h1754arxgwqryayavx3n6vm5daz2krqa"; depends=[cpp11 gmp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.20"; sha256="11fgxbx3w36937h22v9pqx0nk5vpxp3hybj7k1b0lk8mj7hcginw"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.11.4.0.1"; sha256="1qrpdalcvn9bkhiq4l2jflicy6116l5j913h8clyf8yaygsxvr0c"; depends=[Rcpp]; }; - RcppBDT = derive2 { name="RcppBDT"; version="0.2.5"; sha256="1yx6rlidcz5yygzk1kvc5b5vclvdkv96v1y3nghj1523nnapbyxy"; depends=[BH Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.11.4.2.1"; sha256="172vz9j1hck6iwk56hgsrg91n4f11df1n6hy1crbv3cb53rkyjgn"; depends=[Rcpp]; }; + RcppBDT = derive2 { name="RcppBDT"; version="0.2.6"; sha256="11l70rlayg2xzmg34sg3896adzpfpvplciyicjpk963bddjb2ys8"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.0.1"; sha256="157a14kqcf0q3z01mn4w1194k2l39dd4qmqs0i115p8bvkjc6ncd"; depends=[gmp Rcpp RcppThread]; }; - RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.11"; sha256="0vpz34ri1p41kcdzm3ymxz2zg2lqighrfy5adsbamhrz941n99jw"; depends=[Rcpp]; }; + RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.12"; sha256="1jr4hi3zbm935q6ykkvnywlma36d3jl7fxmqhxs62jxbnyyqf81a"; depends=[Rcpp]; }; RcppCGAL = derive2 { name="RcppCGAL"; version="5.4.1"; sha256="1ymnamvnhbx0nbqrlrk8f57py3ccdhirydn1ilvsn6yf1z9bs3sm"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.11"; sha256="0m9g37hrx33mmxhhzi6qakgiqh6w0c2s624fkgbny9vcabr3dfsx"; depends=[Rcpp]; }; RcppCWB = derive2 { name="RcppCWB"; version="0.5.4"; sha256="0myyasiglgm1zmka3gz7vq08hqz5ag2y21ri4a0ck026dxdi6jmc"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.3.0"; sha256="0ghywbg2zrhd72y3hf99niqlw04gvfzfa02pa581lvvd67z19gjp"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack relliptical roptim StempCens]; }; - RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; + RcppClassic = derive2 { name="RcppClassic"; version="0.9.13"; sha256="18kn9r7h5qqf6a6f28rjynrvp0yg0v82hxyv9z6cg254qnzd3bvj"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; RcppClock = derive2 { name="RcppClock"; version="1.1"; sha256="0h59s6f9ib6d2n1fi94bcbqw0gcpbd5zvnc3pk4kb9lm7ih4dw7b"; depends=[ggplot2 Rcpp]; }; RcppColors = derive2 { name="RcppColors"; version="0.1.1"; sha256="10lylgdbiqnvz4r60xb71sk3lxmrvk5nclm4wnwqyz7gbja3xs9g"; depends=[Rcpp]; }; @@ -4279,13 +4293,13 @@ in with self; { RcppDate = derive2 { name="RcppDate"; version="0.0.3"; sha256="1nwb4fdjxwn0c1ckj1fpsxl2hxk5z3sk3y5giwgdag6nfv7yfplw"; depends=[]; }; RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; - RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.2"; sha256="14ylrq7mmylmi513zkwyqqy43kqbz95fc6fzpagqvyx6snaffir5"; depends=[Matrix Rcpp]; }; + RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.3"; sha256="0xhwgn77166ir7qnzl25mj0byskkqr0b36hihrpr2zaqsrzs8wsq"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.19.0.1"; sha256="0cc67nx8iddi70m8s2b683k4zcfakqw90rxm8wmaa2g3vpjbvadl"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; RcppFastFloat = derive2 { name="RcppFastFloat"; version="0.0.3"; sha256="1926hz4q6qqvz8zpabgvk04a18cm1xaqcf30yjgcrslgaf8l8h0n"; depends=[Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.11"; sha256="1a5dms0axlzgpv1z2bhfrb77497h0ch1yslq0gidj14vr4kfm57h"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.12"; sha256="1qmrwd0zc0kwbhpwxg5s5fxp0pmfh0hwcli8vqh1q41997yyy14m"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.3"; sha256="1qcnn482h9b8aw798frnkza4bzzpihp0pf4s1mj6zmn2ar01hsl0"; depends=[Rcpp]; }; RcppGreedySetCover = derive2 { name="RcppGreedySetCover"; version="0.1.0"; sha256="1v84i9gsmvpkmgd4niqnzp58nhrgn2j4rggsrnlh391ikdfrl51x"; depends=[BH data_table Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; @@ -4299,11 +4313,11 @@ in with self; { RcppParallel = derive2 { name="RcppParallel"; version="5.1.5"; sha256="1sn211ajlb1p12sglxqns175rg078yvww268m8cp0vvd7cmk55k3"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.1"; sha256="06ahzp0rvk3wrrj46dmszkmpnybaa5hrpbs2cs5h3jn633k67zj6"; depends=[BH Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.2.1"; sha256="1pcfdg499vakn5rn3jald2hhrzhzsggwg95zm2293ma3pihrjvqa"; depends=[RApiSerialize Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.2.2"; sha256="1xlmw410bli99wjlh6kv5q1nz886vapma23mzrh083fizw3adzfk"; depends=[RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.6"; sha256="1svpzx4h9baipqnx2793vkjh1lnr92y82whpryqzzm4i7b6zx27i"; depends=[Rcpp RcppArmadillo]; }; RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.8"; sha256="1fzawv385d2dbplg84s9qxcjjh29q6wfdslfaarlcz1y6m34vnq5"; depends=[Rcpp]; }; - RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.8"; sha256="1z5fg1i9splph4nfxnra07yjgss9g6g5rcsz492aa0zd8xi7z3za"; depends=[Rcpp]; }; + RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.10"; sha256="19931fgjmzrp65vci3s8gypipg761ajalnn75pdi1x8a2bgz1jhf"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.7"; sha256="0h8517ipwqhqkhcfiyqmvsb585g01p0ra0azbpzyxip6pq6g029g"; depends=[Rcpp]; }; @@ -4311,7 +4325,7 @@ in with self; { RcppUUID = derive2 { name="RcppUUID"; version="1.1.1"; sha256="0sxdj5ay90i1bs3wizij31n21ym8l0q0c79959arp1gd303sd8b8"; depends=[BH Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.2"; sha256="0hm57nf4dzgsmg4hjj6wikwjx93fgfwkmybw6ly4b58wi6qwml1l"; depends=[Rcpp]; }; RcppXsimd = derive2 { name="RcppXsimd"; version="7.1.6"; sha256="1iwiz4964dw015cbxcanks8xkjan39hfzf8x6bhvf6dqqwkc4bh7"; depends=[Rcpp]; }; - RcppXts = derive2 { name="RcppXts"; version="0.0.5"; sha256="1vzq6z5m48cpkbcx2fw7r102jdjfc776d5q3b7yxqsv07r6y2lav"; depends=[Rcpp xts]; }; + RcppXts = derive2 { name="RcppXts"; version="0.0.6"; sha256="1ljwscw8ykyqadjc98r9p6z4qjjfm79n9l618pmhh842l68kag28"; depends=[Rcpp xts]; }; RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.6"; sha256="0wgd1v2p7zajnbrjf3hfi56p3pk3ld6iwkanbb04bjbnlif2ay4w"; depends=[Rcpp RcppGSL]; }; Rcrawler = derive2 { name="Rcrawler"; version="0.1.9-1"; sha256="1m6b1h72h8qjqcg3lzw6im6lpnkxhjg65g9fdjjqay6vy52ynznj"; depends=[callr data_table doParallel foreach httr jsonlite selectr webdriver xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; @@ -4322,7 +4336,7 @@ in with self; { Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.14"; sha256="1d45dn1vxx5vq53m8as4fyq7077s1vw9xxq5r7f4fajybpqiby18"; depends=[formatR roxygen2 xfun]; }; Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.0"; sha256="0f7dikc23z7gyhi29dg2l4l1q178d16nad98xvmdbygah8k1b377"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; - Rdimtools = derive2 { name="Rdimtools"; version="1.1.0"; sha256="12xj079n0khl17yq4mhkxql1afpva797iz5c2z3m7giv7cflc513"; depends=[CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; + Rdimtools = derive2 { name="Rdimtools"; version="1.1.1"; sha256="0mih0ad04ipk9mmcp7i78v7zsdi6np4sl1x1z4gg1s5ww8ci02sk"; depends=[ADMM CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rdpack RSpectra]; }; Rdpack = derive2 { name="Rdpack"; version="2.4"; sha256="109mylzmlncq5a09ayy4g2g0frj1k843lj8j78gvmz1h5g8sslkn"; depends=[rbibutils]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; @@ -4340,8 +4354,8 @@ in with self; { RecAssoRules = derive2 { name="RecAssoRules"; version="1.0"; sha256="0jvl9yl1rg69bqb1cimi8r0bry73jhsq73fxfyy33ljwym2cdgv6"; depends=[Rcpp]; }; Recocrop = derive2 { name="Recocrop"; version="0.4-1"; sha256="1drh1qssnb42p1zl45phpggxhx6is435k9f1vzga0q0dddr5q770"; depends=[meteor Rcpp terra]; }; Recon = derive2 { name="Recon"; version="0.3.0.0"; sha256="11gag2bl00pcy7ysfycaa58qarh6aigznldkc4kkn2178bl4ii62"; depends=[rootSolve]; }; - RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.3"; sha256="11nlmg1hcf4nv69ampc4mdq2lz27mq9yn4q7c0k45g0ilydb0pg3"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; - RecordTest = derive2 { name="RecordTest"; version="2.1.0"; sha256="0a5hbhqx97kllwf5k6lrhcqixhqqj8ndklcvpmsp9jdf011b1100"; depends=[ggplot2]; }; + RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.4"; sha256="0jfissk9gcf1w78dhly01dpjlb8nyk32iz1s2n38ggk8ywd4zgbk"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; + RecordTest = derive2 { name="RecordTest"; version="2.1.1"; sha256="01l16i0i58nsaa2vpfywmqa6srgym4vzybrgbgcv8cpf31w8ly7w"; depends=[ggplot2]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.6"; sha256="18apw0qjzk4lc02bx8kfi7hqxyb23zz2r7zw93dgf04aa8q49x2i"; depends=[RJSONIO rlang]; }; RedisBaseContainer = derive2 { name="RedisBaseContainer"; version="1.0.1"; sha256="0pnjj3rbp2as7h92907g338bd173ygl1zfnlfw6c9wpzfvw909rr"; depends=[DockerParallel]; }; @@ -4356,10 +4370,9 @@ in with self; { Relatedness = derive2 { name="Relatedness"; version="2.0"; sha256="1aidklwk8q2wdfsmhlbd3vzq9kzsyh4wn1g28biyb6lq7iwq1hl4"; depends=[]; }; Relectoral = derive2 { name="Relectoral"; version="0.1.0"; sha256="0kpdafdvpcs6iicpc10i634nlk7dqk2nymdnnlkpp5frdxlbycvx"; depends=[dplyr ggforce ggplot2 readxl rmarkdown sf xlsx]; }; RelimpPCR = derive2 { name="RelimpPCR"; version="0.2.4"; sha256="0svfyh313wawzqx9hfb4cg0wn2ir6nd769z1k3dckdsb8d7xkh3q"; depends=[caret ggplot2 relaimpo reshape2 Rmisc]; }; - Renext = derive2 { name="Renext"; version="3.1-0"; sha256="074djs4y71667aylpgh514pzijr90rgpzm4w5ayq9cgaqz22m3am"; depends=[evd numDeriv]; }; + Renext = derive2 { name="Renext"; version="3.1-3"; sha256="0m5br76n0vd6q1kkjp6w7qxhvrplc63dxm5zcw6cy9f302x76jdk"; depends=[evd numDeriv]; }; RenvModule = derive2 { name="RenvModule"; version="1.1"; sha256="1wmz6k0f9lpa8d7qxqm308l7h11k0cj07q3qisfjic5sp308c3d2"; depends=[]; }; Renvlp = derive2 { name="Renvlp"; version="3.2"; sha256="1fmziz6s1i1vgk58pi5k5h37ys04ngrb8d1avpbvv9pgm557yll8"; depends=[orthogonalsplinebasis Rsolnp]; }; - ReorderCluster = derive2 { name="ReorderCluster"; version="2.0"; sha256="0zq143xvv2br7016f9b1501ymcpkjqm3al1dn5qfm21axyi2p1iq"; depends=[gplots gtools Rcpp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; RepertoiR = derive2 { name="RepertoiR"; version="0.0.1"; sha256="1m7n7p40n3djy91z8z3gqqwscqgij63rjrj2bqbl3baqz16nf4hc"; depends=[circlize igraph reshape2 stringdist stringi stringr]; }; Replicate = derive2 { name="Replicate"; version="1.2.0"; sha256="0kqy248c8n7qr5hwzvqm7flnjlwd60c577r1d4vzgfxn7azd5v3v"; depends=[ggplot2 metafor]; }; @@ -4367,7 +4380,8 @@ in with self; { ReplicationSuccess = derive2 { name="ReplicationSuccess"; version="1.2"; sha256="0x470102sr819jgm1h5b228qcckghnfv8badgb53jy05ral7lrc2"; depends=[]; }; Repliscope = derive2 { name="Repliscope"; version="1.1.1"; sha256="04sxcnsd8vz5kbzqz52iqzwayrmkzc51bcwnfkp53wymiw4vppiz"; depends=[colourpicker ggplot2 shiny]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; - Require = derive2 { name="Require"; version="0.1.4"; sha256="132sawllsw4vnm5b836rmzzimqy9rralvkigi5jqiv07z37xlmqn"; depends=[data_table]; }; + Require = derive2 { name="Require"; version="0.2.5"; sha256="1crj73a22cap9www7fjvqzr3qb2mwx4cwmm02mpv9npqrvv9ybpp"; depends=[data_table]; }; + ResPBIBD = derive2 { name="ResPBIBD"; version="0.1.0"; sha256="00a3qbam4dc9lwfyqq63j8q9yppd4nr7pk0wbikjfw6rnbjsl1sh"; depends=[]; }; ResearchAssociate = derive2 { name="ResearchAssociate"; version="1.0.1"; sha256="00j339ngc72gn2gyn1irjmazrv6l5nbsy3z25r6j1zrjwsbay15p"; depends=[ggplot2 plyr rentrez XML]; }; ResidentialEnergyConsumption = derive2 { name="ResidentialEnergyConsumption"; version="1.1.0"; sha256="0m24x5mha58ihsd06jkcb3wi796v3gkjg78w8vah21p9gqdmqxw1"; depends=[]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; @@ -4376,6 +4390,7 @@ in with self; { RestRserve = derive2 { name="RestRserve"; version="1.2.1"; sha256="1xfcp0y9l31815g1jk33mnkb6z68qpjl0gb4fj7f4578kx3v1c8p"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; RestoreNet = derive2 { name="RestoreNet"; version="1.0"; sha256="015j8kw0msixjxljhpj4hnj67k9z89zcsyga0jva4ig5ri24rj34"; depends=[ggplot2 Matrix RColorBrewer scales scatterpie stringr xtable]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; + RevGadgets = derive2 { name="RevGadgets"; version="1.1.0"; sha256="1d14wf6zya1p9wrh1yvrl1gryldvnq7zvhi3b99002w9jph5zp25"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.8"; sha256="19cj92v7356n3910dx2z8xzi78fynd32kb9132ll2xw295mfk61i"; depends=[bigrquery config dashboardthemes DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; @@ -4384,9 +4399,9 @@ in with self; { Rfast = derive2 { name="Rfast"; version="2.0.6"; sha256="0zxykq021h57mq0n6giqbx8ncjsdly0arhmaj3fcp3yfcxf4ns9l"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfast2 = derive2 { name="Rfast2"; version="0.1.3"; sha256="1bqaazgna9vradgs8naqnyv5y1q4fq67hm18k22bcb5vycci3m5k"; depends=[RANN Rcpp RcppArmadillo Rfast]; }; Rfit = derive2 { name="Rfit"; version="0.24.2"; sha256="1b3pza2xdpifvrcqbdp5r2wy82ws1844bnpna01hqj65xbw2iix8"; depends=[]; }; - Rfmtool = derive2 { name="Rfmtool"; version="4.1.8"; sha256="1p4b9wgcdvlhfcf1rq15wcx2qjn2hgqp6gv7wx40dziqa8csrlpk"; depends=[]; }; + Rfmtool = derive2 { name="Rfmtool"; version="4.1.9"; sha256="1rkzczif7v8dqmivyfc4wblymf482ddjllabzz14bswv7mfnly5k"; depends=[]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; - Rforestry = derive2 { name="Rforestry"; version="0.9.0.116"; sha256="0px9w40d5qd5br1ypbdfdwmhfj9mxdn915ijg077bs3h52fv00z0"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; + Rforestry = derive2 { name="Rforestry"; version="0.9.0.144"; sha256="1hgrphvjkl9794fmbpismh30z4gw5lfcx8vh2f1cljp4wg7h94ca"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; Rfractran = derive2 { name="Rfractran"; version="1.0"; sha256="0cwc069f7rhkxkr5kn0n43mdy8m47gh0q6d5ijwzkhncrijb10cy"; depends=[gmp]; }; Rfssa = derive2 { name="Rfssa"; version="2.1.0"; sha256="0ww4s5vhqhdw9rr8maqgzwx6kvj196z339maxd3xx29qxgp6j1ml"; depends=[dplyr fda ggplot2 httr lattice markdown plotly Rcpp RcppArmadillo RcppEigen RSpectra Rssa shiny tibble]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; @@ -4399,6 +4414,7 @@ in with self; { RiemBase = derive2 { name="RiemBase"; version="0.2.5"; sha256="1ikv7n8hp23a5dbmnfypdkx74vxwjd9br0hvysnhhpg1ffvr5vhi"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; Riemann = derive2 { name="Riemann"; version="0.1.4"; sha256="1a3mlfgnzdvl5x1nqnmm4v3xb2nkdq87c21m6xyxbm7zh5vx5b6m"; depends=[CVXR DEoptim lpSolve maotai Matrix Rcpp RcppArmadillo Rdimtools Rdpack RiemBase T4cluster]; }; Riex = derive2 { name="Riex"; version="1.0.2"; sha256="03627dik6dd9d2kwv757zanh0i4invmcwg162m9ayhv41ygj5z1l"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr TTR urltools xts zoo]; }; + Rigma = derive2 { name="Rigma"; version="0.2.1"; sha256="0h0fblnsbrkkvd0cimywa3gq4q7ay9p39f7x2rpis58kj28ra6fn"; depends=[bslib checkmate dplyr fs glue httr2 lubridate magrittr png purrr rlang tibble tidyr withr xml2]; }; Rilostat = derive2 { name="Rilostat"; version="1.1.8"; sha256="02fmz4jla151w6bz0zg766q4d34kz1jf43156yr2f90zj8x4jjx4"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble tidyr xml2]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Rirt = derive2 { name="Rirt"; version="0.0.2"; sha256="0npd2g3a4dh5hlj6l06k1pf0j4731ybqqd4mpi4id16nf81cg104"; depends=[ggplot2 Rcpp reshape2]; }; @@ -4412,7 +4428,6 @@ in with self; { RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="4.0"; sha256="019rmciqza5rd5z9hvh8xk20c2rjhzyzp1k5731qm1d3jz5lwx5k"; depends=[]; }; Rlabkey = derive2 { name="Rlabkey"; version="2.9.0"; sha256="0337vdwbhxk463a0hbi3xvdnzl6wb4jcqvwzfl5qw5200j66v6cc"; depends=[httr jsonlite Rcpp]; }; - Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-4"; sha256="11nhgzdf37345m5k153pfrdsqbg6gpp4g8xig19pcf4sbmqq2k5l"; depends=[BH forecast Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.2"; sha256="0hzsnrz30429pavf7qghknykah9ks4msb96zwa1xgvqb4zd512dg"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; @@ -4436,7 +4451,7 @@ in with self; { RoBMA = derive2 { name="RoBMA"; version="2.3.1"; sha256="0cj360bbhcsljhz0zm1ivmqwh37g83mrcv2yvrvnfffaarziflj9"; depends=[BayesTools bridgesampling coda extraDistr ggplot2 mvtnorm psych Rdpack rjags runjags scales]; }; RoBSA = derive2 { name="RoBSA"; version="1.0.0"; sha256="0r6qsjsb646s4li78nz94xkgmpbdndl71j6ra74fd6bx1gkysxqw"; depends=[BayesTools bridgesampling coda Rdpack rjags runjags scales survival]; }; RoBTT = derive2 { name="RoBTT"; version="1.0.0"; sha256="146pvhl214kbhhxqay85789n5mwrn2hk47s8jwh8r04c6jcdlsi7"; depends=[BayesTools BH bridgesampling Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; - RobAStBase = derive2 { name="RobAStBase"; version="1.2.2"; sha256="18rk8rry7y17kk262308hf6nsvr7syzyqx0n0sjhqcc82j2bamxl"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; + RobAStBase = derive2 { name="RobAStBase"; version="1.2.3"; sha256="02gapmpwkqy0n65nfaa9rvpx6693j9h93hfhn6s41q7833gvcx3z"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.0"; sha256="1s84j5in4av9zbbszv8j2rpigrd9ws9h4hz64jw7xagsj3xb49kz"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.2.0"; sha256="150p94f0g75g54qcaq4x45lk4sxiyvv1zs4hxkicf46raybvsv89"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; RobGARCHBoot = derive2 { name="RobGARCHBoot"; version="1.2.0"; sha256="142r6cmzwhg4xfbpbgrvngncm2wczly2arg6p8612ypjsk4yinrf"; depends=[doParallel doRNG foreach Rcpp RcppArmadillo]; }; @@ -4449,7 +4464,7 @@ in with self; { RobStatTM = derive2 { name="RobStatTM"; version="1.0.5"; sha256="192acs7fwkw760d58s0byd5zk3j0gysa158wa2ygfkifzwbagc89"; depends=[pyinit robustbase rrcov]; }; RobinHood = derive2 { name="RobinHood"; version="1.6.5"; sha256="0j54dhb6bss9dkkphfs18mmnk7n0qmxzykch1ivqqr4m8gbq3x8r"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-5"; sha256="1i119qqlavfj7k0srb8fbbyy2nhsjv9rgrni854liizr9m51cgac"; depends=[robustbase survival]; }; - RobustANOVA = derive2 { name="RobustANOVA"; version="0.1.0"; sha256="1qxmrf115iyzfafd52m3sy87hbhga5byrwq83l13bxwairvfy0ar"; depends=[optimbase PEIP]; }; + RobustANOVA = derive2 { name="RobustANOVA"; version="0.3.0"; sha256="1kpvahxipcmsqk6mv2zagcvw0glmsj0xkpf6f3gjnckin6mxnjyv"; depends=[optimbase PEIP]; }; RobustBF = derive2 { name="RobustBF"; version="0.2.0"; sha256="137lsk72sx29lhkc1s698k015vvbmdzb23i8pnlk5204bjfqzch8"; depends=[]; }; RobustBayesianCopas = derive2 { name="RobustBayesianCopas"; version="2.0"; sha256="0cbibfp4y45cc1disp2r37v0jln0cd9gy3d77z3k9ybj1gg8wa88"; depends=[rjags statip]; }; RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.3"; sha256="1fz0lhgj70zfh5mlcfswxz168hpir68pdz7lszz21ixr73hjdhxb"; depends=[nloptr Rcpp RcppEigen RobustGaSP]; }; @@ -4462,7 +4477,7 @@ in with self; { Rogue = derive2 { name="Rogue"; version="2.1.3"; sha256="00phrxhsszp98wa9wxbx51z2zrrwpdwamym1k19493ppn7vz22ix"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; - Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; + Rook = derive2 { name="Rook"; version="1.2"; sha256="0qjziszrrwsp1mbykps3yf5r98q83cyd4jzpgi7gvbsd2ssy96n7"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.2.1"; sha256="0qd6cmzp8fkb75ac79xbh4032vqwax7nk7d6yykpdbn0bnk2kvdi"; depends=[doParallel foreach inflection iterators]; }; Ropj = derive2 { name="Ropj"; version="0.3-2"; sha256="1c9d2paa5b2ym8qn608hyimr3fbns7nxrhk1bms87cgd8a7sqaf0"; depends=[Rcpp]; }; Rosenbrock = derive2 { name="Rosenbrock"; version="0.1.0"; sha256="0qfdyr66g244jvbnssbnj2b2ng740dr4qmillpnwl4h2hh811syv"; depends=[MASS]; }; @@ -4476,7 +4491,7 @@ in with self; { Rpoet = derive2 { name="Rpoet"; version="1.1.0"; sha256="11gp4zg0wc2a21956355rkr3i3dyaabfz0z30z4phn8s7y3yqr92"; depends=[]; }; Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.5.4"; sha256="00wmxk8j89lyzbb7fws4g8znnqbw5dh64vqhxjg5rxjdpr3vibl8"; depends=[digest geometry git2r lgr R6 rgl stringr XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-1"; sha256="1hx3c6iqkxfwppv9168d2wrgfsxi1zl29cbi684w7ndvchfly49v"; depends=[]; }; - RprobitB = derive2 { name="RprobitB"; version="1.1.1"; sha256="1f5bnzqj58m07lp17fckwc9h55ngv5l3da54xzrvyzasvjk79031"; depends=[crayon doSNOW foreach ggplot2 gridExtra MASS mixtools mvtnorm plotROC progress Rcpp RcppArmadillo rlang viridis]; }; + RprobitB = derive2 { name="RprobitB"; version="1.1.2"; sha256="1acxgxv4v7id7smrg9f8dfxx9y17pvqwsbfg0n8zdd99q724bpx5"; depends=[cli crayon doSNOW foreach ggplot2 gridExtra MASS mixtools mvtnorm plotROC progress Rcpp RcppArmadillo rlang viridis]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rquake = derive2 { name="Rquake"; version="2.4-4"; sha256="1929qxqbb6s316zb9x2q1kwz2pvwpvqr1w6iw8vm5vijyf1nvv30"; depends=[GEOmap MBA minpack_lm RPMG RSEIS]; }; Rquefts = derive2 { name="Rquefts"; version="1.2-1"; sha256="1v548wys8fd6xqz4hfvqkckl6szjf6zr383n1x0kc6f2pfrc6jnf"; depends=[meteor Rcpp]; }; @@ -4484,10 +4499,11 @@ in with self; { Rraven = derive2 { name="Rraven"; version="1.0.13"; sha256="0nlqr1hzbzbz4rb3hjy01iw8czhaqvwmy9hh728fgl5vajwqwn8g"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; Rrdap = derive2 { name="Rrdap"; version="1.0.6"; sha256="0lwp80622xnjgfljds0fs64l3c30ijmz495v48j564za4ss4yx9q"; depends=[curl rjson stringr]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; + RsSimulx = derive2 { name="RsSimulx"; version="2.0.2"; sha256="04z71idb9jhm7cmgm3vwr6y9wlji2q82gd3f73sy0n9sg0cl60dj"; depends=[ggplot2 gridExtra]; }; Rsagacmd = derive2 { name="Rsagacmd"; version="0.2.0"; sha256="1z92fk7j2n6zzplfc3xlhnaynn2i2cp6cq6hw621fmnf09ccq005"; depends=[foreign generics processx raster rgdal rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; - Rserve = derive2 { name="Rserve"; version="1.8-10"; sha256="0b2x6kqrc23xah6bg7c6ncmq8wkj4z898r2qjwjyinsq965a4qxg"; depends=[]; }; + Rserve = derive2 { name="Rserve"; version="1.8-11"; sha256="118vmylh14avsq4ckx0933hk8j200jkbz88j5rfyx31z95l1vywx"; depends=[]; }; Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; @@ -4496,7 +4512,7 @@ in with self; { Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.6"; sha256="1jbi4nib0a749k7vkqzhdb5l2jipxq9k8vi5x7i06qns8sb3ajil"; depends=[kohonen Rcpp]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; - RsqMed = derive2 { name="RsqMed"; version="0.1.7.1"; sha256="18r78svwbnri5283s5nxg4vrp29r6xx13h0n6w634jdpwaiw56gk"; depends=[GMMAT SIS]; }; + RsqMed = derive2 { name="RsqMed"; version="0.2.1.0"; sha256="0answ66a9gi38lw48xjvb0f2cpifxi9c5iwlghwh26baffqp9m64"; depends=[GMMAT SIS]; }; Rssa = derive2 { name="Rssa"; version="1.0.5"; sha256="0bajpvrj7cfch7v83dl2swa62kd59xk0lavjcx20lczvd9iijn27"; depends=[forecast lattice svd]; }; Rstg = derive2 { name="Rstg"; version="0.0.1"; sha256="1rghac9sjld03rw1sbq2r7rs2fzf3a2xikjb47cfdnk1r73ziysf"; depends=[reticulate]; }; RstoxData = derive2 { name="RstoxData"; version="1.2.1"; sha256="0xfznv0nl7xymlxbd7g0lbxqw1zcyc9mm4mx0nwpw896vz7dvyvw"; depends=[data_table Rcpp stringi units xml2 xslt]; }; @@ -4513,9 +4529,8 @@ in with self; { Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.11"; sha256="1fbls9hy4s0hdszg449bpapx2mhknwiasvr15djf9f1hm0b2908p"; depends=[]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.37"; sha256="18gvv8kih58dw1xz57xnz86mhd0mpn311m1mkjqhcj0z4gkjiwwh"; depends=[]; }; - Rvcg = derive2 { name="Rvcg"; version="0.21"; sha256="13b3l72ii7ndzmglf48xz1lm7kkpsca2q6148ihgbrpnv9n0w5r1"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.22"; sha256="1c9s0wp4n5bz32s5h9h18sxk69fri7ikl8yx490inb6znwh7hkgc"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; - Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; Rwave = derive2 { name="Rwave"; version="2.6-5"; sha256="1r72kcc5f9k38ks39nh9x1y7k1kxrbyv7lywqpsy7wknnddzg7kc"; depends=[]; }; Rwclust = derive2 { name="Rwclust"; version="0.1.0"; sha256="0c7q2i9n22sqj3wq9m0j49y5h14848myjbixrdkic8lvv91dm438"; depends=[checkmate Matrix]; }; RweaveExtra = derive2 { name="RweaveExtra"; version="1.0-0"; sha256="1jg4dn2x8d74z0wy9j9azvb8f1g0449ji5yl6g964lv2g3fpq6qh"; depends=[]; }; @@ -4523,7 +4538,6 @@ in with self; { Rwofost = derive2 { name="Rwofost"; version="0.8-3"; sha256="1x6ia49xrdqcxilq12g47gd00smm5jdrq7xavndd3dcnvl1nqk1y"; depends=[meteor Rcpp]; }; Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.2"; sha256="0lxjzznigk4i8lzga88m0i6x2j5c5q79rvs5knd762ycfxwlmx6w"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; - RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; Ryacas0 = derive2 { name="Ryacas0"; version="0.4.3"; sha256="1qsj6hbydi923bvc8qy1k34nl73xf3fsmr5ww3dw9gzn1kzg2470"; depends=[Rcpp settings xml2]; }; @@ -4544,12 +4558,14 @@ in with self; { SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; }; SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="1.1"; sha256="1ihxr455hxpk3mz113j7ai36lw9i4v60yd4x50j7npzcpq5r0mwk"; depends=[Matching]; }; - SAMtool = derive2 { name="SAMtool"; version="1.4.0"; sha256="09waiyiq4nvc5dx2dycb4xxb83k7k4z3yv3lx8cdh5d4lx9v6hj7"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.4.1"; sha256="0628iahnik4k67lfk06h6g5bn47584mxi4pia0cyi79nzbw0782k"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAP = derive2 { name="SAP"; version="1.0"; sha256="129szqkh4snlqn5q09yaqf6sd04nvai3a0ifk0b36yrqj92v6fd1"; depends=[BSDA]; }; SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.5"; sha256="17pvgc7alv59lxnrz1rj5gdl2lg90jxfwkyn8j802n22r3bmzcsm"; depends=[car igraph]; }; - SARP_moodle = derive2 { name="SARP.moodle"; version="0.8.7"; sha256="1yq1rvalibdja12461nivaifhdip3w0qzm0z99zcl0h13r6zl55r"; depends=[base64enc]; }; + SARP_moodle = derive2 { name="SARP.moodle"; version="0.9.1"; sha256="115zr99lwlrgy56xrls1x0wa64jm04xwr2a39kihy3wx8j49rb2n"; depends=[base64enc]; }; SAScii = derive2 { name="SAScii"; version="1.0.1"; sha256="04cns0mvff7crbsv8vld3qwjrj280jzbx25m9d03l9wa4ba2djny"; depends=[]; }; + SASdates = derive2 { name="SASdates"; version="0.1.0"; sha256="1413x0biid7972zz2qqv22h26a738mp7n97gpxxs9rykxkw3bfr5"; depends=[]; }; SASmarkdown = derive2 { name="SASmarkdown"; version="0.8.0"; sha256="16bfad9rp0yi9pph2m3f7bkkaiv2q41gkw5ji15x3ngqibv0khyi"; depends=[knitr xfun]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; @@ -4558,7 +4574,6 @@ in with self; { SBICgraph = derive2 { name="SBICgraph"; version="1.0.0"; sha256="04c9xb9fdxz62qdsfkdkckvfpccrc7n5j3j5v1lgjywxq6l78wsm"; depends=[glmnet MASS network]; }; SBMSplitMerge = derive2 { name="SBMSplitMerge"; version="1.1.1"; sha256="1h44qwz9gkwwgkac25h4vn0kq3mjvjsyq99yfd8v8g6g8fkkclaq"; depends=[ggplot2 reshape2 scales]; }; SBN = derive2 { name="SBN"; version="1.0.0"; sha256="1k4x8hzjrzvaxnq9z9rykc65lfp4x75nhjrfpk6llq9hqjms2n06"; depends=[igraph]; }; - SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; SBdecomp = derive2 { name="SBdecomp"; version="1.2"; sha256="0p3f028c674j6bl82sgmbwlim2hljxm38qiff78pzn5yx34y3r0b"; depends=[survey twang]; }; SBmedian = derive2 { name="SBmedian"; version="0.1.1"; sha256="1pxwsp6z1qvhmzprhr8f8i1id5zy4ppq7dxbd6ny2h1r1zvy16xm"; depends=[expm Rcpp RcppArmadillo Rdpack]; }; @@ -4589,7 +4604,7 @@ in with self; { SCRT = derive2 { name="SCRT"; version="1.3.1"; sha256="0wkxc22hv08riivjl09lhxvffqxxdy4xnvdmc2y69gssyinkbln1"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.3.1"; sha256="1gdicpnbr8bdgrbwwslpwpzw2adpp94p8nhsrkdx0bjlpfhd4g9h"; depends=[ggExtra ggplot2 plotly scales]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; - SCpubr = derive2 { name="SCpubr"; version="1.0.2"; sha256="0zkp7has7y571kq1bf840mrgwwqi0ks2ka94gax3m8z205w5z3ns"; depends=[]; }; + SCpubr = derive2 { name="SCpubr"; version="1.0.4"; sha256="10np0w5zqmqjg6k8cnipclh8pqrw81187q0zlicm42w4q4dyvgzn"; depends=[]; }; SCtools = derive2 { name="SCtools"; version="0.3.2.1"; sha256="0pw0kpqv4hzskfigl7ch509jj2cmp674l9ms2ivbx3sxq9l0hhj1"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; }; SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; @@ -4598,6 +4613,7 @@ in with self; { SDLfilter = derive2 { name="SDLfilter"; version="2.3.0"; sha256="1187mcn41l7qqxq130qk5cyh7dcv69b5n07hjcilkpaz5rl6wl2w"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 ggsn gridExtra lubridate maps plotKML pracma sf stars]; }; SDMPlay = derive2 { name="SDMPlay"; version="2.0"; sha256="1qdvpa57p4p3949rjmvvvz41a3hm3jb34dnn8s2pi04rzrjkys0f"; depends=[dismo raster]; }; SDMtune = derive2 { name="SDMtune"; version="1.1.6"; sha256="13q3yy6jj6b42k2bgwv40m06kpl5hpc9f4ysvdh6p3x80qxq3cgh"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rlang rstudioapi stringr whisker]; }; + SDPDmod = derive2 { name="SDPDmod"; version="0.0.1"; sha256="17wyymjip84dxpncz6kqg32wlwn5qgw7x54djg301wqmvpjyl2y8"; depends=[Matrix plm RSpectra sf sp spdep]; }; SDPrism2D = derive2 { name="SDPrism2D"; version="0.1.1"; sha256="1f1k6lk0fh9dz11703fpbmvjl2gyq4y7l4khigl1h69j9xv97yf3"; depends=[]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-5"; sha256="1gs29jaj46i2bhbnpa0s6bhdrylz1s6wnif5cyc5m7xl19s413gb"; depends=[]; }; @@ -4624,7 +4640,7 @@ in with self; { SGPdata = derive2 { name="SGPdata"; version="26.0-0.0"; sha256="1l0d9l25nzmiwmwh0b3cm7c854h56ir0qmb70mi8jawnirmilpp2"; depends=[crayon data_table]; }; SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.1.1"; sha256="106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; SHELF = derive2 { name="SHELF"; version="1.8.0"; sha256="05kr2y5wqbpw3ajf5pbhhfyqv7n3zw3kb7ba2j24sr62jlin3avv"; depends=[ggExtra ggplot2 ggridges gridExtra Hmisc MASS rmarkdown scales shiny shinyMatrix tidyr]; }; - SHT = derive2 { name="SHT"; version="0.1.7"; sha256="0dj6z07qagk9wjp50b9w078zcvdss99cj0xalykwl63l1l96w6cw"; depends=[flare pracma Rcpp RcppArmadillo Rdpack]; }; + SHT = derive2 { name="SHT"; version="0.1.8"; sha256="03mzjm0hx1i8jz7gam19zyr5w6whwk7a3gfid68h5hj8x60p04wx"; depends=[flare pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; SIBER = derive2 { name="SIBER"; version="2.1.6"; sha256="1ymr1y2c984nnjkj5nwc1mi4ixdwg8d191nn58i0dvckzm922z80"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat spatstat_geom spatstat_utils tidyr]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.3"; sha256="1d8kx5m86qil50d8fhwn7lwaigdnppzk0cwyh4hv54lwffpclnki"; depends=[mclust]; }; @@ -4634,6 +4650,7 @@ in with self; { SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.1.0"; sha256="0gxw8xb2hvsizawfd863c268q5wq1cdsmdsand5iys2b9gry1pmq"; depends=[MASS]; }; + SIMICO = derive2 { name="SIMICO"; version="0.2.0"; sha256="0inyiv2ccz6amdwy94liln0lfs9f12nwq6l0wcqvj42idyjas4ky"; depends=[bindata CompQuadForm fastGHQuad ICSKAT]; }; SIMMS = derive2 { name="SIMMS"; version="1.3.2"; sha256="1pdbgqndnhgyfcwgr5ijnnmn64cwlalwbanb2grkm7h80bpql3lw"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; }; SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.5"; sha256="01bqakis3piwdpm04h9k7p9qyzfaxw9lf6r70rja1kv8w4aprlxm"; depends=[nlme]; }; SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.1.7"; sha256="0n937v4m5a39waqqks640bvmnclzg4r2x4v36nr985xw153m9pj9"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE purrr rstudioapi tibble]; }; @@ -4676,7 +4693,7 @@ in with self; { SMVar = derive2 { name="SMVar"; version="1.3.4"; sha256="1mh15iggzbd7ip15pkwzmiy8p712cvvns5pgdyw1pvkcvbvkxsma"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; SNPannotator = derive2 { name="SNPannotator"; version="0.2.5.0"; sha256="1fkiv1xifkwcsh26dca6jr6plqxwbnmlbs9amimdn3hljkzmlxbf"; depends=[data_table doParallel foreach ggplot2 httr jsonlite kableExtra openxlsx progress rmarkdown xml2]; }; - SNPassoc = derive2 { name="SNPassoc"; version="2.0-17"; sha256="12pzkrxd6hi76x160xkgbg7csqp2jw5yvj9sz0079zry7n03kqlc"; depends=[BiocStyle Biostrings GenomicRanges ggplot2 haplo_stats IRanges mvtnorm org_Hs_eg_db plyr poisbinom S4Vectors survival tidyr TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + SNPassoc = derive2 { name="SNPassoc"; version="2.0-18"; sha256="0karxsv4ilxscm51sj9yhm17xfnxvh3bkxvsmmvsypf4mpa1ks0a"; depends=[Biostrings ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; }; SNPfiltR = derive2 { name="SNPfiltR"; version="1.0.0"; sha256="03a6ym4pc39yb2ijyw957aisksz7m8lrpjbrnyqzndxyvdn5pgbi"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; @@ -4719,7 +4736,7 @@ in with self; { SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPSL = derive2 { name="SPSL"; version="0.1-9"; sha256="0kf6mmbvavid3dw2l4fkclk669wi13wkyykhwn5272d6qnhlhhca"; depends=[]; }; SPSP = derive2 { name="SPSP"; version="0.1.1"; sha256="0bzlgjijwp5y6lk9hjqc2p8b1i6mp8jd7j7gsl47whc3lavr1nn8"; depends=[glmnet lars Rcpp]; }; - SPUTNIK = derive2 { name="SPUTNIK"; version="1.4"; sha256="1sspsvll7b03z2ag2iixydcbbjr2glg1n6k7m1lapq4ra77arh7i"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils testthat viridis]; }; + SPUTNIK = derive2 { name="SPUTNIK"; version="1.4.1"; sha256="0446qh43q09l7kvcgsp4gkp7p9v9448xx0xwngxgghnnmwh8fa4p"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat_explore spatstat_geom viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; @@ -4729,9 +4746,9 @@ in with self; { SQUAREM = derive2 { name="SQUAREM"; version="2021.1"; sha256="0n1s32l9p4vdm3h5q6g43s0qbpzry08difsh0yay80wrla6f3rb6"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRS = derive2 { name="SRS"; version="0.2.3"; sha256="0nx1sj91xkwplcmflq9c21zndaa4m21m9iqax86v947k070q48ql"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; - SRTsim = derive2 { name="SRTsim"; version="0.99.2"; sha256="156vks38apxpx7v7qljmhn6lka2lmrd8p939d69ykrvmpi3cnqyw"; depends=[concaveman dashboardthemes ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; + SRTsim = derive2 { name="SRTsim"; version="0.99.3"; sha256="1l59x6gv6ya2s2wn7ccrn0jvb0hsc6f8wxvn3pwklz37467b94s6"; depends=[concaveman dashboardthemes ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="1.3.4"; sha256="11hmabl79p67j5yn6wan4ahiqn84mbsw0k6zkasc5wkfscxl1p5d"; depends=[MASS Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="1.3.8"; sha256="1vc15wcg8469vplxykzs3g5nb7a5nr2v8zdypj1gaghalv00iadf"; depends=[MASS Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; SSDforR = derive2 { name="SSDforR"; version="1.5.28"; sha256="197rg6mar869wc83khzgdv28kpsc5b8gd0pqczvfcxzvqmwaiwgw"; depends=[Kendall MAd MASS metafor psych SingleCaseES TTR]; }; SSHAARP = derive2 { name="SSHAARP"; version="1.1.0"; sha256="0x8dinhhfk4q1cck7ms78f4k23430c4wyvlh2qclq0c83acjj4y9"; depends=[BIGDAWG data_table DescTools dplyr filesstrings gmt gtools stringr]; }; @@ -4739,7 +4756,7 @@ in with self; { SSLR = derive2 { name="SSLR"; version="0.9.3.3"; sha256="0fv1jqri3gpzcfs429pgx4hjqmjrglb4g7nfqdihd2hjmq9k4sql"; depends=[conclust dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; SSN = derive2 { name="SSN"; version="1.1.15"; sha256="057lh2ym82ff3c25vyh97csns4jwlbvxwc4jai0i4yplxf0ccmha"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; - SSNbayes = derive2 { name="SSNbayes"; version="0.0.1"; sha256="0kp7c4pynisqji6lfwnklsvjbwx44424qkyd4syhsn3rrr510ph5"; depends=[dplyr plyr rstan SSN]; }; + SSNbayes = derive2 { name="SSNbayes"; version="0.0.2"; sha256="0y5n9c9a6kd53ijai18arpsm09jp3v3f31zgg22y0pz6i3y24hm3"; depends=[dplyr plyr rstan SSN]; }; SSOSVM = derive2 { name="SSOSVM"; version="0.2.1"; sha256="11wlalpw6yhvv95xr8vvgxgl4jafc2ghzsk5wqyv71ahxarmrlss"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; SSP = derive2 { name="SSP"; version="1.0.1"; sha256="0ccg81rsjki1fcqvj6lgmmmy5yw1gxy8khajl1i80qyi4v7ny9hk"; depends=[ggplot2 sampling vegan]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; @@ -4763,16 +4780,18 @@ in with self; { STMr = derive2 { name="STMr"; version="0.1.5"; sha256="1wz88y1fr2z7jwmni063j4rk1smbpbmgz6aw9cgfivz7gsps879n"; depends=[dplyr ggfittext ggplot2 magrittr nlme quantreg tidyr]; }; STOPES = derive2 { name="STOPES"; version="0.2"; sha256="0dlr9hasily74wlwb44qadql9qdii326xhdnam1anszsvijzs4dk"; depends=[changepoint cvTools glmnet MASS]; }; STPGA = derive2 { name="STPGA"; version="5.2.1"; sha256="0mwjv9r7x925ljmbwk2fl0xvf2n2hnf5n5z5p5rxr57ywvirqw1b"; depends=[AlgDesign emoa scales scatterplot3d]; }; + STREAK = derive2 { name="STREAK"; version="0.1.0"; sha256="0y6m7m2wpksymqnp4h1vangg70nz3qk1crd12g69smr02lg3amnk"; depends=[Ckmeans_1d_dp Matrix Seurat SPECK VAM]; }; STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.2"; sha256="02cd78z2k08gg5kskw1m53dc2xyl9f8qhcnhvy9n90ckakw6h19h"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; SUMMER = derive2 { name="SUMMER"; version="1.3.0"; sha256="082ziawqkqgq18ghy46fgk7l5d1k9ls135qbzqkmb4xwiy1v2avm"; depends=[data_table ggplot2 ggridges Matrix RColorBrewer reshape2 scales shadowtext sp spdep survey survival viridis]; }; SUNGEO = derive2 { name="SUNGEO"; version="0.2.292"; sha256="1xav5by7sl21cwfg9m1ij1lz1kvdlqkkp2ah67rnj9vp4vk7nkfg"; depends=[automap cartogram data_table dplyr fasterize httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf sp spdep]; }; - SVDNF = derive2 { name="SVDNF"; version="0.1.0"; sha256="13cangmx4srinrm42vc9qy24qghs2m8zb7lf0p3mc412z9n0r4px"; depends=[Rcpp]; }; + SUSY = derive2 { name="SUSY"; version="0.1.0"; sha256="0l0mxvas80d9n3vv9bqxw2dk8q1ikwg616hraprcs70aabh7717w"; depends=[]; }; + SVDNF = derive2 { name="SVDNF"; version="0.1.1"; sha256="1di3x4yx5hv0lzy7mydaq927qyl69dybqd6mh99h9scyxdilvjyd"; depends=[Rcpp]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2.9.1"; sha256="08f9sndcjgmmxl3zlbq86d8z0dbciv0ab1v9zx80svka7ckfv9z3"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; - SWMPr = derive2 { name="SWMPr"; version="2.4.1"; sha256="1dqhsqigfbfj167mp2h0wfybaymj9zlywh5d3syrrmpr694f9kz5"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; + SWMPr = derive2 { name="SWMPr"; version="2.4.2"; sha256="0lllfc5ixhhpx17fmm6rziphikc3r4k3i8cr8gjwghg9j94rc5mp"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.3"; sha256="1ig5wvf1h89v65xh1p69ab57flmlafjc02kgkcq3nfvm904ida4i"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; SWTools = derive2 { name="SWTools"; version="0.2.4"; sha256="1azhmsb00mndqza0cb0nslyyc1c2d9lc1y6p19ibisizqdr04sqx"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; @@ -4781,7 +4800,7 @@ in with self; { SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; - SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-3"; sha256="0lqzj91qx52icvcswhv81y9ck78gcjycnj0z36mgks6zs9zfpiyv"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; + SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-4"; sha256="093x9rfilxhgf75p0rfsvglz0sg3imhdm15azxnjiblamyxbhfjm"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; SangerTools = derive2 { name="SangerTools"; version="1.0.2"; sha256="0ijxfa1h3mx86jk1s27qp7l4sz2d7i7llkwjvgnih9zjk0ybrdzw"; depends=[DBI dplyr ggplot2 ggtext ggthemes janitor magrittr odbc readr readxl rlang scales tibble]; }; ScaleSpikeSlab = derive2 { name="ScaleSpikeSlab"; version="1.0"; sha256="11n3pi15x77by0ikiawhnvlky6hp6qzwmsmp4l2hjng1469y7gg6"; depends=[Rcpp RcppEigen TruncatedNormal]; }; @@ -4809,8 +4828,7 @@ in with self; { Sejong = derive2 { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; SeleMix = derive2 { name="SeleMix"; version="1.0.2"; sha256="03q5pdgxdfx944zwpl2w7gzf23va4flbd8in3g03980smq0ai2c1"; depends=[mvtnorm]; }; Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; - SelectBoost = derive2 { name="SelectBoost"; version="2.2.0"; sha256="1j525phl1b2b0f4b08az8p74mcgcnmv261d0sqrii8p44474zsy4"; depends=[abind Cascade glmnet igraph lars msgps Rfast spls varbvs]; }; - SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; + SelectBoost = derive2 { name="SelectBoost"; version="2.2.2"; sha256="189hdr50sikg6pr9x9amjmgg9z0c95j65bddmifsy7zvjhllzjiy"; depends=[abind Cascade glmnet igraph lars msgps Rfast spls varbvs]; }; SemNeT = derive2 { name="SemNeT"; version="1.4.3"; sha256="1qjjbx86sh2gk91bnx0rn3wszlf1w8wxyda5k2mqn4gzgpfplcsp"; depends=[broom car dplyr effects ggplot2 igraph magrittr pbapply philentropy plyr purrr qgraph RColorBrewer scales]; }; SemNetCleaner = derive2 { name="SemNetCleaner"; version="1.3.4"; sha256="1fll6i4bz2z07h23z5m3x8hqw5rkianh0w6v8gnnkjqlrnacpfp9"; depends=[easycsv editData foreign miniUI R_matlab readxl rstudioapi searcher SemNetDictionaries shiny stringdist stringi]; }; SemNetDictionaries = derive2 { name="SemNetDictionaries"; version="0.2.0"; sha256="1yhhva79hhj1imzw0n8wkyrb6pmxcqs7kq9czs392xzc6lqk9xr2"; depends=[easycsv knitr]; }; @@ -4839,8 +4857,8 @@ in with self; { SetMethods = derive2 { name="SetMethods"; version="3.0"; sha256="14hh1rb8bma0cx3v9dmn58mkv6sky7xcnhwxwij5x8hp93a1i9is"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="4.2.0"; sha256="1vzb2k21nnzlky5dbf586wnixffz7wc9ncrpbgdw8md2kcmd58r2"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="4.1.2"; sha256="03bd4fazcafaf5mp37cf9w6bxm9zwrlxkrqm9bjdnwxm07slanba"; depends=[future future_apply Matrix progressr Rcpp RcppEigen rgeos rlang sp]; }; + Seurat = derive2 { name="Seurat"; version="4.3.0"; sha256="0z7rzxi1gli56k50s6w1363ndw18wykgk5xmc3g7jhpphqxwpfky"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png progressr RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_explore spatstat_geom tibble uwot]; }; + SeuratObject = derive2 { name="SeuratObject"; version="4.1.3"; sha256="1lw6v5mwq0sngjr33j99r5h42kaxlbq271a51xzkcnhnyra2fpaq"; depends=[future future_apply Matrix progressr Rcpp RcppEigen rlang sp]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="2.2.0"; sha256="0x4a9qg5g44kdras8j7f0yyw44qfpizpmj657xgmbrwcai4ic1dh"; depends=[igraph landscapemetrics raster rgdal rgeos sp]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; @@ -4865,7 +4883,7 @@ in with self; { SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.5.1"; sha256="1wb7w0pfahl3c8w8a8finlmrnvsickip17immriibanl3ppyrxzz"; depends=[formula_tools Matrix msm mvtnorm plyr survey]; }; - Signac = derive2 { name="Signac"; version="1.8.0"; sha256="01nxl6v6zr14m4n6f8z9r004766s7945j5nxwv3i2w879lzi4jww"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba Matrix patchwork pbapply Rcpp RcppRoll Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; + Signac = derive2 { name="Signac"; version="1.9.0"; sha256="1a5gwfsr7fdc8405d23zxs9m54viik7m07xa1m1gs6argr13dzxq"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba Matrix patchwork pbapply Rcpp RcppRoll Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.3"; sha256="1f57zbc7746jr2hfgri29whw5nb7w8h9nwk2p2n851b1rf7q0mgp"; depends=[car]; }; Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.8"; sha256="16pzcs1g5ihza9a2glnkgd5pxi77l6w34vkn0vxcb78gc6syhbrd"; depends=[Deriv MASS]; }; @@ -4888,8 +4906,9 @@ in with self; { SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.4.4"; sha256="0z7wwwl814bwaijkmg9wcdj5xisiamc9yqypmk0hzj950569aj8p"; depends=[dplyr kinship2]; }; SimReg = derive2 { name="SimReg"; version="3.3"; sha256="1liwwbi3zqrcbqx5przdlzhnq7jvyjd6yhaxalhwggzf9zv7w8ci"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; + SimSST = derive2 { name="SimSST"; version="0.0.4.7"; sha256="0gjk9crif1z2kcqrk8ry6v72ykn0y5k9b1ar9qa8rqbq860f7wmx"; depends=[dplyr gamlss_dist]; }; SimSeq = derive2 { name="SimSeq"; version="1.4.0"; sha256="068gg484w07qb4wajik2s3z79xfj0jg5l4pz69267dxi5kzd9fas"; depends=[fdrtool]; }; - SimSurvNMarker = derive2 { name="SimSurvNMarker"; version="0.1.2"; sha256="1k62n56mzxv40j0g7631g6r18sgddwsl59wlyi0s5rzwjmiwpbgk"; depends=[Rcpp RcppArmadillo]; }; + SimSurvNMarker = derive2 { name="SimSurvNMarker"; version="0.1.3"; sha256="0ngr6cbhg3ccsm0v5mf3871pzxzmdprdap3kljfi8w6rrah830fx"; depends=[Rcpp RcppArmadillo]; }; SimSurvey = derive2 { name="SimSurvey"; version="0.1.5"; sha256="1i417kp7lcd7a19bna2y29sirgv30bb3xs8i4a2l6zmbq0kqsgf8"; depends=[data_table doParallel foreach magrittr plotly progress raster rlang sp]; }; SimTimeVar = derive2 { name="SimTimeVar"; version="1.0.0"; sha256="1x0lkgqwx1vz1gbyvy0hx20n638n30j0dny1iz5vs0cvviq3cdv8"; depends=[car corpcor ICC metafor miscTools mvtnorm plyr psych]; }; SimVitD = derive2 { name="SimVitD"; version="1.0.2"; sha256="1ddzp43bnna6n96h6qkqfis1l7mihf20wcy98cn37ri96zacwly4"; depends=[simpleboot]; }; @@ -4915,8 +4934,8 @@ in with self; { Sleuth3 = derive2 { name="Sleuth3"; version="1.0-3"; sha256="0ngwri80cwqs50wjza8qyzzwign4ag1ck7fa1x7q5x08w9x6w08m"; depends=[]; }; SlidingWindows = derive2 { name="SlidingWindows"; version="0.2.0"; sha256="0hvxg4hrk3rb1wxhi71rgamxd8wcwys569137znfs0y8j6yvf0jj"; depends=[DCCA nonlinearTseries PerformanceAnalytics TSEntropies]; }; SmCCNet = derive2 { name="SmCCNet"; version="0.99.0"; sha256="0ixvh1pd1gzbscwg4xjlcgxq5c9vqahil0fysfjc3fnba3wiidzx"; depends=[igraph Matrix pbapply PMA]; }; - SmallCountRounding = derive2 { name="SmallCountRounding"; version="1.0.2"; sha256="1alcy02qz5fkk24xaja0cgnf36sn0rv0439d2w8sj2vw1dsrzm87"; depends=[Matrix SSBtools]; }; - SmartEDA = derive2 { name="SmartEDA"; version="0.3.8"; sha256="07686x8l25pd0166n6s86zlnj8s10g6by2kd55rfh5didqx8zmsv"; depends=[data_table GGally ggplot2 gridExtra ISLR qpdf rmarkdown sampling scales]; }; + SmallCountRounding = derive2 { name="SmallCountRounding"; version="1.0.3"; sha256="1jnhfzjd2x54h35si1wrr91dkzdzc502m07mvvb894y5pq5q823a"; depends=[Matrix SSBtools]; }; + SmartEDA = derive2 { name="SmartEDA"; version="0.3.9"; sha256="0fmqi3kl20xdrnpbbsk22rrhj2xqckb777mcwdjgwxvc77r88bjf"; depends=[data_table GGally ggplot2 gridExtra ISLR qpdf rmarkdown sampling scales]; }; SmartMeterAnalytics = derive2 { name="SmartMeterAnalytics"; version="1.0.3"; sha256="0i8my7ngzdbay3cld8axhvbri0nh0dd1dmv2lbsgyx4adr5hb30f"; depends=[FNN futile_logger plyr stinepack zoo]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; SmarterPoland = derive2 { name="SmarterPoland"; version="1.8"; sha256="19pxr1zch2bm5jw676dp0p2crvmdmvzyxz07vhx926axpb4i0xbp"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; @@ -4926,7 +4945,6 @@ in with self; { Snake = derive2 { name="Snake"; version="1.0"; sha256="10i1bqsva70lzavfqvc56ga70ddjfwf0hqpspj8fqwa0jw86jmbh"; depends=[]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; SnowballC = derive2 { name="SnowballC"; version="0.7.0"; sha256="1wwm71mp4b2mjb5985x782p6xj519dfrpd40qli7lmig6afyw3xi"; depends=[]; }; - SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; @@ -4944,19 +4962,15 @@ in with self; { SortedEffects = derive2 { name="SortedEffects"; version="1.7.0"; sha256="188qlgg3m8f07hbjim65yw3qy6200y0b54imkdqm8mq0f14nmi0f"; depends=[boot Hmisc pbapply quantreg SparseM]; }; SoundShape = derive2 { name="SoundShape"; version="1.2.1"; sha256="1fkwvvb5pw2qf950hb1d1y6bkazs09hgxd6nn933lhn8ci2v9bzc"; depends=[abind geomorph plot3D reshape2 seewave tuneR]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; - SoupX = derive2 { name="SoupX"; version="1.6.1"; sha256="083kyikziwai7dgj4gl758vy5nss2ppnmvc6ily5wzz4v4g3ff95"; depends=[ggplot2 Matrix Seurat]; }; + SoupX = derive2 { name="SoupX"; version="1.6.2"; sha256="19g3gqgiqllpafc9ihlm083d47zqiygh4p2dhy54k486gk6jcqlv"; depends=[ggplot2 Matrix Seurat]; }; + SourceSet = derive2 { name="SourceSet"; version="0.1.5"; sha256="17dbxdqm9jkhyip6xdwrxsqqyncs5skclbi9drjbdcw745p7c6lh"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; SoyNAM = derive2 { name="SoyNAM"; version="1.6.2"; sha256="1ajsk51bd9aajlyv9q6yjmdm9xs9jf07j5m189m00mhl21xpzn0b"; depends=[lme4 NAM Rcpp RcppEigen reshape2]; }; SoyURT = derive2 { name="SoyURT"; version="1.0.0"; sha256="0l710ijqmqvpcsxaqia1g1bm5317qp1cc2nsf5ccz1vmgqxrxn1g"; depends=[]; }; - SpATS = derive2 { name="SpATS"; version="1.0-17"; sha256="0f8mwycm0344crvp8y04ccq6rvxmvwcz43l24av3hlx7wk392c3a"; depends=[data_table fields spam]; }; + SpATS = derive2 { name="SpATS"; version="1.0-18"; sha256="1p7ibi4593a6f5ww02l74afxaxgk2nh8h67l43vm2p7zfmdxx2b3"; depends=[data_table fields spam]; }; SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; - SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; SpTe2M = derive2 { name="SpTe2M"; version="1.0.1"; sha256="1qcjxr25v5m0nab3xq4bgzilmx2vgibgxnax5bhybfdaskgflhz5"; depends=[glmnet MASS]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; - SpaDES = derive2 { name="SpaDES"; version="2.0.9"; sha256="11acb05b957qwbii701y1b4lvcnvmiixkrlmqkccc8n9icqq107n"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; }; - SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.4"; sha256="0ly411y95rcm30slaj02vn7clmyq3dvinzg1x40vbsqzcjjg1h6l"; depends=[magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="1.1.0"; sha256="0rmdwyk4733skf3mgi879lcg5hjiv72mf96yby3a0x9v2lzlzbv7"; depends=[crayon data_table fastdigest igraph lobstr qs quickPlot raster reproducible Require whisker]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="1.0.0"; sha256="1p1mj9gfgikqng5p9yj01ykxnrqvxcgd6ghi7amgqlkhv9mbjwhi"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp Require rgeos sp]; }; - SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.1-0"; sha256="0rf07v3hcdqd0lp1jzbr08ijg23z6dp6kypxnq1fh1yvyq9nzy87"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; + SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.2-0"; sha256="1s4q7nb00616s229p7jrap8df8d8p5bxflskprq2h62mx22dlfsz"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; SparseChol = derive2 { name="SparseChol"; version="0.1.1"; sha256="1agfl3a7vxjxx64qf76v6a796vmviv3dcp4h7127nr2lg5nx4446"; depends=[Matrix Rcpp]; }; @@ -4969,15 +4983,15 @@ in with self; { SparseMSE = derive2 { name="SparseMSE"; version="2.0.1"; sha256="1alpvj0ya3r64wwfdzz2aaxgaf6512glzl65p97606c2fwrm6db7"; depends=[lpSolve Rcapture]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="4.0"; sha256="01lfb3j907244hgapb85kba7zdmgzhw452gri208qgrjzfv2x9yh"; depends=[abind glasso huge longitudinal MASS mvtnorm network]; }; SparseVFC = derive2 { name="SparseVFC"; version="0.1.0"; sha256="1qv7vnalwp2jn302r53c3yfiyz51qzr0fi1ishmbal2bh3j910b7"; depends=[pdist purrr]; }; - SpatEntropy = derive2 { name="SpatEntropy"; version="2.1-1"; sha256="0navil5wjzw67diz87ijnaikx4ws7fnbqqbmpdxhla6dfdd8yhd5"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; + SpatEntropy = derive2 { name="SpatEntropy"; version="2.2-0"; sha256="0vp4mns6izycz9sznzqmww4h34gbk5nwfnnx10yba4l7y78zjjkg"; depends=[spatstat spatstat_geom spatstat_random]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; - SpatialBSS = derive2 { name="SpatialBSS"; version="0.12-0"; sha256="173zr8r0wp7zcg4ziqagfzzlwf5gjcywj5nqvsnnpwbgjagpfla1"; depends=[JADE Rcpp RcppArmadillo sp]; }; + SpatialBSS = derive2 { name="SpatialBSS"; version="0.13-0"; sha256="15bv6w576ch5fb7limnpm7m4n9yws8qsrmgvgvxqaq8fb5c5n8mr"; depends=[distances JADE Rcpp RcppArmadillo robustbase sp SpatialNP]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.7"; sha256="0hfspksv9dgi98kcjwa291x8dglskfl4d1cjkd2hqxlf73havpzx"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.1-0"; sha256="0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3"; depends=[fields maps]; }; SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; SpatialKDE = derive2 { name="SpatialKDE"; version="0.8.0"; sha256="0qnyriiy1401darnmjdcpsyp76ib822djz8bsgv4xnx9armhkh6a"; depends=[cpp11 dplyr glue magrittr progress raster rlang sf vctrs]; }; - SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.0"; sha256="0nsrf30bl3yc1h1kldv1ah1jjb4qh4hd99rd1nz9q9rqmdp0dcrw"; depends=[Rcpp]; }; + SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.1"; sha256="0b5vfsmpl3zxcwsg7bj85kfbyv8a2bgfq72b3rk4r6ms7ngc5i16"; depends=[Rcpp]; }; SpatialML = derive2 { name="SpatialML"; version="0.1.5"; sha256="13didlxl9fn5h48fyz29f2vh3vi8g2fisbnaraqlgwn5fbsg3ihd"; depends=[caret ranger]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-5"; sha256="0cxh1f4182mfihq6m82zh2lgafrsiqvgrfxbk66zkjrrbfn8gkcl"; depends=[]; }; SpatialPOP = derive2 { name="SpatialPOP"; version="0.1.0"; sha256="0pgd4injkimjp6pid42arhfbavx2i8crkdvqr35bjvf26p7hbvv3"; depends=[MASS numbers qpdf]; }; @@ -4987,7 +5001,7 @@ in with self; { SpatialRoMLE = derive2 { name="SpatialRoMLE"; version="0.1.0"; sha256="1m80vcd27g11v0gxnjz6p4ghljpxdb8jpkns8ry5yzhfvcpf29jc"; depends=[]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; SpatialVS = derive2 { name="SpatialVS"; version="1.1"; sha256="1xghfiz9wmmx11ssms7zjy3ggkjmc6kkbdwp3v5wjwpwapafzdk3"; depends=[fields MASS nlme]; }; - SpatialVx = derive2 { name="SpatialVx"; version="1.0"; sha256="1320dl8sr9zqka2pa361gsi3sr4clzz7bp7zj1p07khyz3xchinf"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat spatstat_core spatstat_geom spatstat_linnet turboEM waveslim]; }; + SpatialVx = derive2 { name="SpatialVx"; version="1.0-1"; sha256="06l2p3p24s08diq6g6301hk8fmc4wd43wc94a4jl31lq6zjihiwc"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat spatstat_geom spatstat_linnet spatstat_model turboEM waveslim]; }; SpatialfdaR = derive2 { name="SpatialfdaR"; version="1.0.0"; sha256="14l3fvwrzyrldbk8d2p0syk9lmhn208yi20493qd41babsaaxll3"; depends=[fda geometry knitr rgl rmarkdown]; }; Spbsampling = derive2 { name="Spbsampling"; version="1.3.5"; sha256="0p98l58qfc4ddimmqca77cr536q2pnrlcb3r344c7apnakidz7ng"; depends=[Rcpp RcppArmadillo]; }; SpeTestNP = derive2 { name="SpeTestNP"; version="1.1.0"; sha256="1767xhnfdq9qm626j8jr0l6vnr7kkljsyarz3y318y33ja3rx71j"; depends=[doParallel foreach]; }; @@ -5000,15 +5014,14 @@ in with self; { SphereOptimize = derive2 { name="SphereOptimize"; version="0.1.1"; sha256="1b01jpj0sagi3hwfvgd346wvrcypv5b3hh0xfdd8qqnwjgkq8ixi"; depends=[]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.5"; sha256="03j9f9v3zrykrd4lc74i19s3xyc0z3l2kg3056qg591sxw64h7vh"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; - Spillover = derive2 { name="Spillover"; version="0.1.0.2"; sha256="0a9gvr2p4xdd47k8vfjyq952svfxvfvqzp6bkbsjj0mdjvjq3kaj"; depends=[dplyr fastSOM ggplot2 tidyr vars zoo]; }; Splinets = derive2 { name="Splinets"; version="1.0.0"; sha256="1fws9svxvn03xgfqmqwr169wgl544zv87yrdi4nl5z32cq5c9yk5"; depends=[]; }; - SplitGLM = derive2 { name="SplitGLM"; version="1.0.4"; sha256="0wi2zmd1fc2k1xdnjidihbv33iyiwxqqng3pnk3alf4x7ka67pb3"; depends=[Rcpp RcppArmadillo]; }; + SplitGLM = derive2 { name="SplitGLM"; version="1.0.5"; sha256="0i9fs09bch3qsf6b6sws82hd5rzhhfcf17f30b5w7b2rr0sc9dxa"; depends=[Rcpp RcppArmadillo]; }; SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.2"; sha256="1ywh86gkkcc2dddqfgs5w8w9wyjfqmvcr31jga41ddvj5rb8zkhx"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; SportsTour = derive2 { name="SportsTour"; version="0.1.0"; sha256="06d66yv0b7c3mg1bcnrlg576njxgri107ni0vnl27hzf46fyidwa"; depends=[]; }; SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; }; - SqlRender = derive2 { name="SqlRender"; version="1.10.0"; sha256="0rkmja3da8fn5klmd4wyg3ws0k2gbk2cxxj69cnhm4q7vxywwwl7"; depends=[checkmate rJava rlang]; }; + SqlRender = derive2 { name="SqlRender"; version="1.11.0"; sha256="0n2gxfvzjsg3p0wgras394lf182gi9nwn9v3cn8isyqg61zsl2p1"; depends=[checkmate rJava rlang]; }; SqueakR = derive2 { name="SqueakR"; version="1.3.0"; sha256="09l6dj1xq2zxxy6jnh1dl4rlcbx06fvf0jp2nypv3497dn97jsrh"; depends=[dplyr ggcorrplot ggeasy gghighlight ggplot2 ggpubr googlesheets4 MASS plotly RColorBrewer readxl report rlist rstatix shiny shinydashboard]; }; Sshaped = derive2 { name="Sshaped"; version="1.1"; sha256="0jy926ykyw7a2q0wabbvm2sm2g4d5y8wl6na4xjmf0ybr6rma458"; depends=[Rcpp RcppArmadillo]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; @@ -5026,6 +5039,7 @@ in with self; { StatMatch = derive2 { name="StatMatch"; version="1.4.1"; sha256="1iavyaj6q8rbvhki98q8zwikfrgjrp6w8prhnqhiv0yb8k27jm0c"; depends=[ggplot2 lpSolve proxy survey]; }; StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; + StatTeacherAssistant = derive2 { name="StatTeacherAssistant"; version="0.0.1"; sha256="0n9na9mzjzcgkq97ix1v3dxhzbc6c9s8g3rm4ikwsa2j4asrfbrd"; depends=[DescTools dplyr DT ggplot2 plotly rhandsontable rio rmatio shiny shinyalert shinyBS shinyjs sortable stringi stringr teachingApps tidyr]; }; Statsomat = derive2 { name="Statsomat"; version="1.1.0"; sha256="1lfgbbf1pcfbih5nfb6rbiq2h0hlxg1fzmcf4330yc48r998q4x6"; depends=[car corrplot data_table DDoutlier energy ggplot2 gridExtra kableExtra knitr readr reshape2 rmarkdown shiny shinydisconnect]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; @@ -5046,7 +5060,7 @@ in with self; { StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="1.0.5"; sha256="0q1d5jar5x2v9bsrfzv73wirgbkvy16ibzq93qv9b6c4zj3q75r7"; depends=[coin dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; StratifiedSampling = derive2 { name="StratifiedSampling"; version="0.4.1"; sha256="15gg1qc2znyba2y6kq8qq6wz69lq3kkpps0a3j9jdq8n67x65zkp"; depends=[MASS Matrix proxy Rcpp RcppArmadillo Rglpk sampling transport]; }; - StratigrapheR = derive2 { name="StratigrapheR"; version="1.2.5"; sha256="0wc4q3y8n9wd79dwjn5i4y4b5h8yk3g9x3ifg7dxsryk5i2wml0c"; depends=[diagram dplyr reshape shiny stringr XML]; }; + StratigrapheR = derive2 { name="StratigrapheR"; version="1.3.0"; sha256="01pj1in36cjsfpavhlx56by3pxxxqy1chvfpa73xsdbrqmjs975s"; depends=[diagram dplyr reshape shiny stringr XML]; }; StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; String2AdjMatrix = derive2 { name="String2AdjMatrix"; version="0.1.0"; sha256="058r30kjjna02nmd6ngqfcnn1yk5390i20xvl6qb5qk3bcp2wmxn"; depends=[stringr]; }; @@ -5074,10 +5088,11 @@ in with self; { Superpower = derive2 { name="Superpower"; version="0.2.0"; sha256="0bv2jx3hadp5d9c3q790in3m728c8jc1nkp9wqvzcdip1d29hyin"; depends=[afex dplyr emmeans ggplot2 gridExtra magrittr MASS mvtnorm reshape2 tidyr tidyselect]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.7"; sha256="025b9nlxz62wk84295csyzbncpn80i3iby3sxdigf3swcgi2fmbb"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="1.0.2"; sha256="1l586x9np5rclqdrnv8b72ixlppzlnsq4yf99ny6aq5a9lwzmcgm"; depends=[gstat raster rgeos sp]; }; - Surrogate = derive2 { name="Surrogate"; version="2.4"; sha256="1fp9dps1z8wjdbhzkz1wnr7ffpv2nm9cbqns03x5aj290h83bpza"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme pbapply rms rootSolve survival]; }; + Surrogate = derive2 { name="Surrogate"; version="2.5"; sha256="1zbzsjxsrmz1xh3ldxgas0yv2v9l6jqdr9hr002gq9hk5qhspk9m"; depends=[copula dplyr extraDistr flexsurv kdecopula ks lattice latticeExtra lme4 logistf MASS msm mvtnorm nlme pbapply rms rvinecopulib survival]; }; SurrogateOutcome = derive2 { name="SurrogateOutcome"; version="1.1"; sha256="1wiqn9gfvj225dvmp49fyybp77np507s04f28a9wa9jiyvqf7m97"; depends=[survival]; }; SurrogateRegression = derive2 { name="SurrogateRegression"; version="0.6.0"; sha256="0815zskr4g960wm6jcjn0ykmc0db8fg6vzfw97lfgm5m9bjd4h5c"; depends=[Rcpp RcppArmadillo]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.3"; sha256="0vs1ii3l6i6cmswyv6xjbya5filfixppyzmnw099g9s4x8kn0kq7"; depends=[survival]; }; + SurvCorr = derive2 { name="SurvCorr"; version="1.1"; sha256="0pccjc9zdvbb869wfywm23l63h1bpi5px4q5x7fq54pm0iyi1k73"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvHiDim = derive2 { name="SurvHiDim"; version="0.1.1"; sha256="1kix00zfrbx11pwx2dfag8vz5nvf8siw2kbxi8g4fb7xib9wh2na"; depends=[factoextra glmnet igraph Rdpack readr survival tidyverse useful]; }; SurvLong = derive2 { name="SurvLong"; version="1.2"; sha256="15a92lj29ggxwyn52iiq1ns7jp8l8grk17wapffv109fypwhdnh1"; depends=[]; }; @@ -5085,7 +5100,6 @@ in with self; { SurvMetrics = derive2 { name="SurvMetrics"; version="0.5.0"; sha256="14hpvqg0k3ww5qla4s08nrqwcy27y76kfp7b0g1hzs3vv046fb7i"; depends=[MASS pec randomForestSRC survival survminer]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.5"; sha256="0p39xqrnx2x0fgdfdr9ffv2x9zcgi53kqya821gpbnn3ccjzxx58"; depends=[numDeriv survival]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.2.0"; sha256="0zkjlndmg0rc7ycqy2v42nyzs4sd9z1y9y9kwfdci9qrc88nnfmn"; depends=[survival]; }; - SurvivalPath = derive2 { name="SurvivalPath"; version="1.3.2"; sha256="17glrkz63ms76cmg7lfz0nay131ngwxigwfs0rzgfjna9gy06dgi"; depends=[dplyr ggplot2 ggtree Hmisc rms survival survivalROC survminer treeio]; }; SvyNom = derive2 { name="SvyNom"; version="1.2"; sha256="0s9gn10v6a8n6898g0gmdrw51z7y98klji59sn06dfbsxlswlv11"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-6"; sha256="09xq7jx70qjyhblzh6kc40hdr0636rqqdnbka7m6rawhd8ivp8yz"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; SwimmeR = derive2 { name="SwimmeR"; version="0.13.0"; sha256="16vimqdbsj7nb1cv0in6qza00qicajpdcpmzf3lv47wm5kp2iv6n"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; @@ -5098,10 +5112,9 @@ in with self; { SyncRNG = derive2 { name="SyncRNG"; version="1.3.1"; sha256="05a5ifv5yy7brl76cmq7mgqm9s9gm7qgc1cfzih7q1jrw955k400"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.2"; sha256="1y53235523z0nf4pmskdiz3xq4p8hdzvf5jy4ml4isj6nqzy6b88"; depends=[fields]; }; Synth = derive2 { name="Synth"; version="1.1-6"; sha256="0qi8534rw0z20l1m4hhcn2xm16g8rrqfvpy0fs4hik4xc5cjgmbg"; depends=[kernlab LowRankQP optimx rgenoud]; }; - SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; }; SynthETIC = derive2 { name="SynthETIC"; version="1.0.2"; sha256="1z7jyal707a93hv0fsgnkxpnywqw6ksifk0546alzm32g5lp4655"; depends=[ggplot2 magrittr rlang]; }; SynthTools = derive2 { name="SynthTools"; version="1.0.1"; sha256="19vasz3nnm5vgwqs6g2a5bibmk44br1bxga5zavsx938x3jw9gnd"; depends=[dplyr magrittr Rdpack]; }; - Sysrecon = derive2 { name="Sysrecon"; version="0.1.0"; sha256="190djsdiqrkz21hpmzgf0ip3np60plpj0a34qxvp2y6lwygvmxpa"; depends=[ape dplyr ggplot2 ggtree patchwork plyr RColorBrewer readr readxl rlang SnowballC stringr tidyverse tm]; }; + Sysrecon = derive2 { name="Sysrecon"; version="0.1.2"; sha256="0qj0yvbfig6aphc7s10v5hhd30mn7rvdbzxkjfqnbzbfbvr5r2mz"; depends=[ape dplyr ggplot2 ggtree patchwork plyr RColorBrewer readr readxl rlang SnowballC stringr tidyverse tm]; }; SystemicR = derive2 { name="SystemicR"; version="0.1.0"; sha256="1vk08w734zxvrwzd81iy0azwcj53k6wvgc1qlaxw96hirdwdg6zr"; depends=[igraph Matrix quantreg xts]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; T2Qv = derive2 { name="T2Qv"; version="0.1.0"; sha256="1zx7r0axa7b83pynilp0rmw6apilzsqjacn426q4i4jlsvr1ba3k"; depends=[ca dplyr highcharter htmltools purrr shiny shinycssloaders shinydashboard shinydashboardPlus stringr tables tidyr]; }; @@ -5120,11 +5133,11 @@ in with self; { TCA = derive2 { name="TCA"; version="1.2.1"; sha256="1gyps0m7r44vcbzpbrs3xy2kyb2xsvmfzk1c0aq04s4ndcksplwb"; depends=[config data_table futile_logger gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; - TDA = derive2 { name="TDA"; version="1.8.7"; sha256="0jppqk7h9nq1ysdgkqbywsc313v9gvmnlrmsvidgdc9sa1qxw6di"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; + TDA = derive2 { name="TDA"; version="1.8.8"; sha256="174fy3m5l1hlkhiyg2zbi4aq4anmyb1gm0nqmydbp80mbf84krj1"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; - TDApplied = derive2 { name="TDApplied"; version="0.1.3"; sha256="17x9mfvygv5jmrymkkig1b882j3w7cww0xxcb4hvnc9ia01xcj8y"; depends=[clue doParallel foreach iterators kernlab parallelly rdist]; }; + TDApplied = derive2 { name="TDApplied"; version="2.0.0"; sha256="07vw667v5cnh6dxsggxb6028yl2xlxbqw0wr90whd45q61cjmfkv"; depends=[clue doParallel foreach iterators kernlab parallelly rdist]; }; TDAstats = derive2 { name="TDAstats"; version="0.4.1"; sha256="1zmickqk60vm9rzy67hib835v3c45aqjk441p31vpbvhbiy58nq5"; depends=[ggplot2 Rcpp]; }; - TDAvec = derive2 { name="TDAvec"; version="0.1.2"; sha256="1zw5yaym5q358vrppzdgqxwb4hhbqav69pvxb2wlanxap9rkxix8"; depends=[microbenchmark Rcpp TDA]; }; + TDAvec = derive2 { name="TDAvec"; version="0.1.3"; sha256="0g449p1y16sl35md9c4qnj3n7i5nx9appqx22d7ijjhr7zpv0p1s"; depends=[microbenchmark Rcpp TDA]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; TDbook = derive2 { name="TDbook"; version="0.0.6"; sha256="127bvwy65fr0nm7gw4mqcjm6dfrvlnl77z4ig2bpfxy7a0xq67gp"; depends=[]; }; @@ -5141,7 +5154,7 @@ in with self; { TGST = derive2 { name="TGST"; version="1.0"; sha256="1xnb41ksggdi57gnkjaab98c4nfdkxqx53rv9pyh3j0cg0kbkk9v"; depends=[ggplot2 knitr]; }; TH_data = derive2 { name="TH.data"; version="1.1-1"; sha256="0ynxacnz002bjsp2ybql7rdqw4zd14af8r7w44nwbx22n4bapwzd"; depends=[MASS survival]; }; TIGERr = derive2 { name="TIGERr"; version="1.0.0"; sha256="04nnm0adf0sbgv7a2ikaq2a5kb9j1xmdfmssizm49q5j457rrl7d"; depends=[pbapply ppcor randomForest]; }; - TIMP = derive2 { name="TIMP"; version="1.13.2"; sha256="1y1bc6wsd32792apsc6qncxbw5y8ww9xlhy9v49mhwbffgzn6llg"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; + TIMP = derive2 { name="TIMP"; version="1.13.6"; sha256="1if2qm40nlz54pylqvdp4pk2jmicn8wkdlywrkr5hn80c0yyy879"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4.1"; sha256="16zf42s1as2xrvyhd0lnv36mgnr5w19xv11pkl0k8imb5bdkhxa2"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; TKCat = derive2 { name="TKCat"; version="1.0.6"; sha256="1z4ili1hn4nfkg4v84s8xamwxpyfjdyi0b7xpw795d6x80ar3ssk"; depends=[base64enc ClickHouseHTTP DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown Matrix promises readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5.3"; sha256="096sr0j4vhlfsaxc565zgw0mjk4sxkl03i7ip3hzcfph1c05yj6h"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; @@ -5190,6 +5203,7 @@ in with self; { TSPred = derive2 { name="TSPred"; version="5.1"; sha256="14dzpm5i5iml9kb49rnw7kq1ga03l4c6m485b1p8p3ya0n6mivkl"; depends=[dplyr e1071 elmNNRcpp EMD forecast keras KFAS magrittr ModelMetrics MuMIn nnet plyr randomForest Rlibeemd RSNNS tfdatasets vars wavelets]; }; TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.3.1"; sha256="1la1ff9ajcabdsz5f2761647304fpwp779gv0gjds4mg25rf6n2f"; depends=[bfast broom ggplot2 mblm RcppRoll strucchange]; }; TSSS = derive2 { name="TSSS"; version="1.3.1"; sha256="06wnbj741yyi5b483zhbaccvqpbg8lh3z9vnrxy64x28hnn79cly"; depends=[]; }; + TSSVM = derive2 { name="TSSVM"; version="0.1.0"; sha256="07jf5s557j2xr5918fa0rkzz0ivb01acyzw2cbky92wjd21qa97s"; depends=[e1071 forecast]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.4"; sha256="0kbs703nmi1z19r6bcz243sm50ijxwmsx6kcw0g18wmz7v8bj9c5"; depends=[MASS]; }; TSVC = derive2 { name="TSVC"; version="1.2.2"; sha256="0c2dwsb17al6vfgk38xlbzww08xa1i2lji1bhzc3zlp7nb4mkxy8"; depends=[mgcv plotrix]; }; TSclust = derive2 { name="TSclust"; version="1.3.1"; sha256="1pj984sf7z0bakr55jqcrxr4mh4gihdv197m2k05phpp5hsplsjh"; depends=[cluster dtw forecast KernSmooth locpol longitudinalData pdc]; }; @@ -5237,15 +5251,16 @@ in with self; { Tendril = derive2 { name="Tendril"; version="2.0.4"; sha256="1wvczfklsccs8jd081vb6d6h7i35lhf6na925fm7wq8ars0b23wd"; depends=[dplyr ggplot2 magrittr plotly plyr reshape2 scales]; }; TensorClustering = derive2 { name="TensorClustering"; version="1.0.2"; sha256="094pk4v78d97sanrkirk0dyhy6w2i43imcw21q2r76w11d62w7k7"; depends=[abind combinat MASS mvtnorm pracma Rcpp rTensor tensr TRES]; }; TensorComplete = derive2 { name="TensorComplete"; version="0.1.0"; sha256="06lr0blkf5pv1zwlffn7m0xxscjii4jg930nkzrh2k7dnbka6vsx"; depends=[MASS pracma tensorregress]; }; + TensorPreAve = derive2 { name="TensorPreAve"; version="0.1.1"; sha256="01dd9ny8ikrhdsi3rv9nhs10rn0ps8dly8qpqk576qqc8yb0d506"; depends=[MASS pracma rTensor]; }; TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; - Ternary = derive2 { name="Ternary"; version="2.1.1"; sha256="119jb2j17qhahybl46h8bnijaq5mprssk58c1lbyc57agk0pafiw"; depends=[shiny sp viridisLite]; }; + Ternary = derive2 { name="Ternary"; version="2.1.2"; sha256="11g5ya43xgw45y8lngqj3xgbxxglnankj8fj40qij3f1qjggzwnw"; depends=[shiny sp viridisLite]; }; TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; TestDesign = derive2 { name="TestDesign"; version="1.3.4"; sha256="1fz1krvl62bk97sw2swj5cwji34kwc6ni3l10p2xnisfnhll28m7"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.5.5"; sha256="00mh7g6ijlimkfk35yjkmhbx1aqc511v3002q73ppx5977a7zwf0"; depends=[corrplot dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; - TestGardener = derive2 { name="TestGardener"; version="3.0.0"; sha256="1d479myp6f8w358ywjjvpayz1kx5rmyzkgr72nhxjwg0rgw9chgp"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; + TestGardener = derive2 { name="TestGardener"; version="3.1.0"; sha256="1fwad1hanslrxi8vhwd2v99qsd5bnz8nd0knxcq1q0mdp6i7lbxb"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; @@ -5257,22 +5272,20 @@ in with self; { ThermalSampleR = derive2 { name="ThermalSampleR"; version="0.1.0"; sha256="1cl14scgczsc9xvvp5cjk548a48a7vmnc6dgsdhl8bqlkkrp1aly"; depends=[cowplot dplyr EnvStats ggplot2 janitor magrittr MASS purrr rlang sn tidyr]; }; Thermimage = derive2 { name="Thermimage"; version="4.1.3"; sha256="1623r64v97ii8qq6cfrg0jrdl7nwxswjgif5l85vak8xjkfwsq7q"; depends=[png tiff]; }; ThomasJeffersonUniv = derive2 { name="ThomasJeffersonUniv"; version="0.1.0"; sha256="0w2n7jwns82zljkfz509hkkplda5mpbcqk5gzi2y75vlika0rg18"; depends=[lubridate timeDate zoo]; }; - ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-3"; sha256="06jhgl1fzvkvnhrjs4xcyw6yymwl499rw9xnfwpx44dzxi7nynxj"; depends=[MASS numDeriv]; }; ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; }; ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; }; ThreeWiseMonkeys = derive2 { name="ThreeWiseMonkeys"; version="0.1.0"; sha256="1qdb3m15q0gg8dk2znc2syy2jdqsp2893a7ilfa8rg3r2vps86yg"; depends=[stringr tuneR]; }; Thresher = derive2 { name="Thresher"; version="1.1.3"; sha256="16zf5cwc2c5j61xcrqsycwrsc162spyqgk9mac7n37mymn5agbwp"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.0"; sha256="1mzz05aqq6crcfm5bbv0gbpvndk0yy1lf4fxz8zva790g16cilq0"; depends=[ks MASS numDeriv pROC]; }; - ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.0.2"; sha256="1mk2ijh86y065z8y9p255dj09s0nh2h7i33d0z9ww81g6wxbvagy"; depends=[boot InformativeCensoring pROC psych survival survivalROC ThresholdROC]; }; + ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.0.3"; sha256="19xgyrdnwfv4rqvrj7d2603jy0wvi5r17l85lvvv0z56pdcqagl3"; depends=[boot InformativeCensoring pROC psych survival ThresholdROC]; }; TiPS = derive2 { name="TiPS"; version="1.2.1"; sha256="0crni6cam3dwpjrgmr0bmp2czmbycg05sl585ldn4cg38c4dppwh"; depends=[gtools inline Rcpp stringr]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.5"; sha256="1cnfnmwmlicsi243058zq3302niwk2l1agrrjy4k7rf1v7gfy6xx"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.2.3"; sha256="0fryb0icgf3vfzcs4qzwkl58rp6a53caq2bq719abk7ya57zd1gw"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang stringr survival tidyr tidyselect]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.2.4"; sha256="1dv035cj40817aya10vl8g9ij8wdxzxy2r2r3kfz44jhhynfr2hb"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.3"; sha256="1gnkq2ssc9lvkz1j52c2l4v1frxfcnw3j186kf3xbx8qx1aikyqr"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; - TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; TimeVarConcurrentModel = derive2 { name="TimeVarConcurrentModel"; version="1.0"; sha256="0fq05yni8hasivwmv5dk5ivwkprh4fkaa7h1bv8b60savvh0zs23"; depends=[Bolstad2 fda]; }; @@ -5291,19 +5304,18 @@ in with self; { TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="2.0.1"; sha256="0i21g7zzad973802kfp8s638d3g70c4vkrm59i9frb71apvkljk2"; depends=[TreeTools]; }; TouRnament = derive2 { name="TouRnament"; version="0.2.5"; sha256="09i0frzzxi5ymjlvh81rmisxh35amrvhxbkjq5351fhlpf1n977z"; depends=[]; }; ToxCrit = derive2 { name="ToxCrit"; version="1.0"; sha256="1jxi10b733k3djfykyqnpcp2fapsmaszsd7lkwcwmwq62v73rhax"; depends=[]; }; - ToxicR = derive2 { name="ToxicR"; version="22.8.1.0.3"; sha256="0sc7i3jzqhjwhcz83p7vgjmlpz4f27k0phbi2q5c8gxcnkzbffwp"; depends=[coda doBy dplyr forcats ggplot2 ggridges multcomp Rcpp RcppEigen RcppGSL scales shiny tidyverse]; }; - Tplyr = derive2 { name="Tplyr"; version="1.0.1"; sha256="10kai38z0mxm7s6x1vjl2vgvwwkz2lzy04irvxxink5xfs8dqkpd"; depends=[assertthat dplyr forcats lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - TraMineR = derive2 { name="TraMineR"; version="2.2-5"; sha256="0xjyfqac96nf9zrbc5v03253lzyqvzib7j1j27nrxsslkq7dwpk5"; depends=[boot cluster colorspace RColorBrewer vegan]; }; + Tplyr = derive2 { name="Tplyr"; version="1.0.2"; sha256="1wnhw2y6pl6i3syg7qrl16k9gids6qr7sp2z6b88vphz7p9jqi9p"; depends=[assertthat dplyr forcats lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect]; }; + TraMineR = derive2 { name="TraMineR"; version="2.2-6"; sha256="1rqkhfns0i1nfjs6kdvpvjzy6zwiclxhhiscr4zmp4mzj9b5pxp7"; depends=[boot cluster colorspace RColorBrewer vegan]; }; TraMineRextras = derive2 { name="TraMineRextras"; version="0.6.5"; sha256="0y1f296l5fjdiidiyk50vgnn2srzvb6x2ddizay9yv4lichxy4w1"; depends=[cluster colorspace doParallel foreach RColorBrewer survival TraMineR]; }; TraceAssist = derive2 { name="TraceAssist"; version="0.1.0"; sha256="03x071nsfgz1z2qp1zn1y3hfx8ydpj0z4rcfk2i588ad53z86w4c"; depends=[glmnet keras Matrix quadprog]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.3"; sha256="0x2wydp9qj2r2rsv0kmwlq4y7mr391ya13rpnj3mdgl0pjdp445s"; depends=[fields RColorBrewer]; }; Trading = derive2 { name="Trading"; version="2.5"; sha256="0k048pn06qc1kvz0bj3bgfvaf3nqw6flqn4kvxj6vxhzlz3km9qs"; depends=[data_table PerformanceAnalytics reticulate]; }; - TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.1"; sha256="03cr1cmiygi0kq37zs8dnp1rd670yzd4z1wgj31ahnld1siqb30g"; depends=[caret data_table DescriptiveStats_OBeu dplyr lubridate RCurl zoo]; }; TraitStats = derive2 { name="TraitStats"; version="1.0.2"; sha256="07jiipxkidr0hnb3lbbb8yj007m5qzcbq9p5py276sckalamzri0"; depends=[gridExtra lattice qpdf rlist]; }; TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; }; TransModel = derive2 { name="TransModel"; version="2.3"; sha256="1wyg3cn7wp1jird16n88ygikf7qpqv3xhnyj3sv4l7gmwvjp5v5a"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; TransPhylo = derive2 { name="TransPhylo"; version="1.4.5"; sha256="0g92kwi1nlmpc8m4pc9kv9xhczryr2kn9icfr3js7da7vy8g50xy"; depends=[ape Rcpp]; }; + TransTGGM = derive2 { name="TransTGGM"; version="1.0.0"; sha256="0c815qp0nb4c8ymq9gm9yr37vkzlb6fja9j0czl6ww7rvr8fplrn"; depends=[doParallel expm glasso MASS Matrix rTensor Tlasso]; }; Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.4"; sha256="15xba5g5b9rxpndgmhlnnq35xjic9v7ymgpyaaj6fn0kziphip84"; depends=[crayon]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.9"; sha256="1jr3xjdb909rlc698swpi5znmam2v73mp717vfg157df36930yj8"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; @@ -5314,7 +5326,7 @@ in with self; { TreeSearch = derive2 { name="TreeSearch"; version="1.2.0"; sha256="1fl399p3bv5f8vlbzhq3sxc40vi4hfa6jn3cgpy2qv79jggfpzh1"; depends=[ape cli cluster fastmatch future promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; - TreeTools = derive2 { name="TreeTools"; version="1.8.0"; sha256="1gi8k60paliid6jlbagw14j3873rfrn0p22i52lskxq6dhhm4clh"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; + TreeTools = derive2 { name="TreeTools"; version="1.9.0"; sha256="05h9l71mg1b9wx4w9ls25qm3agx9rp6hs0rkn6aqyll9js8mcfh7"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; TrenchR = derive2 { name="TrenchR"; version="0.1.1"; sha256="03w010s3zxbrn7nh439d5mg1670k2hylci28i74q39b9235xn8vz"; depends=[deSolve msm Rdpack zoo]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; @@ -5348,7 +5360,7 @@ in with self; { UBCRM = derive2 { name="UBCRM"; version="1.0.2"; sha256="0cfdgarlks0hkx4fnlm0i2fwpl057vxq58n3xfv718w3cs2nx9wc"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.7"; sha256="1zppc8mgmj4ymxfdvhqiirlf80wh65y58wqm92fgjdn7s06v5skf"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.8"; sha256="0am18hxmcr671pzpms2x6gyndnd8h0dsq72v28ik6c2fjh2wz5x1"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; + UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.9"; sha256="0bqj6vbhjn2wgq2486qyfl8wfsgz1gd0kwxrvjxp8fvx96nsrx1l"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.8"; sha256="0w0rps6jsiw67k6h8j1g0nqzwwhl1kb2by90xd4w61i71vk0fda7"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; UComp = derive2 { name="UComp"; version="2.2.3"; sha256="11vhkpz1nvqfldksaa8rdhpn0f05x4h2dfpaabr0w274rwad93ap"; depends=[Rcpp RcppArmadillo]; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.3"; sha256="053hsdaa7xnzk95bdp0i1jr6pzq50zvfn1m5sm0znsrk59m5xhgm"; depends=[data_table dplyr here magrittr questionr tidyverse]; }; @@ -5387,9 +5399,10 @@ in with self; { UpSetVP = derive2 { name="UpSetVP"; version="1.0.0"; sha256="1v6djfwaix978vzfjnj0vd3r0m3svfqkn9aqnf9qz2xsjk43m9zr"; depends=[ggplot2 patchwork rdacca_hp]; }; UsingR = derive2 { name="UsingR"; version="2.0-7"; sha256="17ljllslhfmi80yj1336lx9pmzy2i8zdb6byky5yay1lry7s1g30"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="4.2.1"; sha256="1w1zihmhrygn2i674wimbv7xqjnwlld4x3ndvh5dl4cdg7s1m24r"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="4.2.2"; sha256="0friwpw3cbg40hfsqnlp8g3a6l4zhfag6lh005ya6dw634kkarah"; depends=[curl jsonlite Rcpp]; }; VAJointSurv = derive2 { name="VAJointSurv"; version="0.1.0"; sha256="19ib4b1kf1zg4l571f2asxkwbab44pzs954agj0wx1p6kb2v608q"; depends=[lme4 Matrix psqn Rcpp RcppArmadillo RcppEigen SimSurvNMarker survival testthat]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; + VALIDICLUST = derive2 { name="VALIDICLUST"; version="0.1.0"; sha256="1glcvzrbc7glxmbmas3zzb114a5cfl7gsf7xlxaifrrgvcahrvnx"; depends=[diptest dplyr]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="1.0"; sha256="0pm2m1wwsyrfwvqibf4mn6wbnslynvb1964i79iqhy5qp4nflajp"; depends=[]; }; VARDetect = derive2 { name="VARDetect"; version="0.1.6"; sha256="1yrlyg4b53bdmfjcqi07l0gr3f01h8jwj6g6av3plyk96cvl4svb"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; @@ -5406,7 +5419,7 @@ in with self; { VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; VEwaning = derive2 { name="VEwaning"; version="1.2"; sha256="1438j8dlfmn2yacg1haa66fmmv11x49b38qyl03jvw9vcxi1gz4x"; depends=[ggplot2 survival]; }; VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.3"; sha256="1w0d7z86gg16vjg3bd9flr53q02wjz5hzs0460hx167ixi13m5jv"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; - VFP = derive2 { name="VFP"; version="1.4"; sha256="0p964fag5a0p23x6jgyc5bx4kp3ar9jdh88n4nybiv884sdfbk90"; depends=[gnm MASS VCA]; }; + VFP = derive2 { name="VFP"; version="1.4.1"; sha256="14idww1vy695mp9v2h0nxqi6flmm41cr30i0yd2nwjsnriwqgzak"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; VGAM = derive2 { name="VGAM"; version="1.1-7"; sha256="0zkmj7crkkvi7ki88f6vfn7x8gf0ycrbg13wann7wirj4cwjvid4"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.1-6"; sha256="14s8118k66yy0dljr364dbq1hrvjwmg69n3ls3dbmxfm1f9vrmnw"; depends=[VGAM]; }; @@ -5416,6 +5429,7 @@ in with self; { VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.1.1"; sha256="1dpl9y86i8hcrbyvgfkix4vpg5rsz5y6g8m73jl8kzpi686r9ikv"; depends=[]; }; VIM = derive2 { name="VIM"; version="6.2.2"; sha256="1r0myxcx8y1a3fkf9ssk882f09snn2j6zilsygpld32hahn4k9xg"; depends=[car colorspace data_table e1071 laeken magrittr MASS nnet ranger Rcpp robustbase sp vcd]; }; + VIMean = derive2 { name="VIMean"; version="0.1.0"; sha256="0kxrcigp94h2j1vx5pj24sp73iqxldc1ygm5bak4jrld66r0nb5b"; depends=[]; }; VIRF = derive2 { name="VIRF"; version="0.1.0"; sha256="0bdkmbmkmmj78h9x025qsdzjzcx8xr2s98wlspcsghlz4hxkzcas"; depends=[BigVAR expm gnm ks matlib matrixcalc mgarchBEKK rmgarch]; }; VLF = derive2 { name="VLF"; version="1.1"; sha256="096a7nx60qm4b7fil4s3r4mlp8fq60v0lq893jh3ij6gm63mfcim"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-3-1"; sha256="0cwfpxcj8g68j9z9fl66i0amj8ypf199iv3yyxzsmniqv4w5x4ar"; depends=[MASS]; }; @@ -5424,6 +5438,7 @@ in with self; { VMDecomp = derive2 { name="VMDecomp"; version="1.0.1"; sha256="0iq2lj7n77qmryf95cjl2y869bhy6i0mx44qls7xc07g0qplwqx3"; depends=[data_table glue Rcpp RcppArmadillo]; }; VOSONDash = derive2 { name="VOSONDash"; version="0.5.7"; sha256="1qivx5ddl9jsn6q6ic2w8jrczxlx23z087k5arfz2rixgj7rndyg"; depends=[data_table httpuv httr igraph lattice magrittr RColorBrewer shiny SnowballC systemfonts syuzhet textutils tm vosonSML wordcloud]; }; VPdtw = derive2 { name="VPdtw"; version="2.1-14"; sha256="1pr8jrd7ymgf46h2gbvanqjrvpc4xs39sk86vvxhawzf3w31g257"; depends=[]; }; + VSOLassoBag = derive2 { name="VSOLassoBag"; version="0.99.0"; sha256="1pp1rycxfzg3cif73q5z6c06ln6h31b24mxgbh48nhirjgp8b6g1"; depends=[ggplot2 glmnet pbapply POT SummarizedExperiment survival]; }; VSURF = derive2 { name="VSURF"; version="1.1.0"; sha256="1azfd4sb89mp27l86k293qj81x94gfiy1ihwnb6c558p8h69xsgf"; depends=[doParallel foreach randomForest ranger Rborist rpart]; }; VSdecomp = derive2 { name="VSdecomp"; version="0.1.1"; sha256="1vx68rhsxvi3kkrwr98hqhivhdmb9dm9rnmgspx74dskhkysjwbg"; depends=[ggplot2 Hmisc lfe reshape rlang]; }; VTShiny = derive2 { name="VTShiny"; version="0.1.0"; sha256="1zq6irla3q7hqs8jpjdya7vy3frqrj72rwmd1sgxwrkgpmpxw6x7"; depends=[EnvStats rmarkdown shiny]; }; @@ -5442,7 +5457,7 @@ in with self; { VennDiagram = derive2 { name="VennDiagram"; version="1.7.3"; sha256="0ilcxcp8qskmb5cp7fyb7i0qizg42lrx0ny8ws3if90kfrglghp7"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; - VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.8"; sha256="0yvm3kkc7ssk85ripdgbxj8gazqb1dfswgjy63c3gb135zi2cbqk"; depends=[Rcpp]; }; + VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.9"; sha256="08gpsi6vrink2dd1ngwbhi8yxrasgh0xi5klc64v7ig49hky9wma"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.2"; sha256="1ay09dahlqnfrgf4gl4s45a4ahrk2xliagxqz5h826w2vzsawqcc"; depends=[chron colorspace ggplot2 Matrix reshape2 stringr]; }; VicmapR = derive2 { name="VicmapR"; version="0.1.9"; sha256="0c1mmnng0i7lzgp745h59w34fl94pl5cwsz65wy7pm2sy5p80mjb"; depends=[cli curl DBI dbplyr dplyr glue httr kableExtra knitr leaflet lubridate magrittr mapview purrr rlang rvest sf xml2]; }; @@ -5451,7 +5466,7 @@ in with self; { VirtualPop = derive2 { name="VirtualPop"; version="1.0.2"; sha256="0g3yzv9fqmxydqq6b56l6abz03slk7425aahixs3q26gwp587rz4"; depends=[HMDHFDplus msm]; }; VisitorCounts = derive2 { name="VisitorCounts"; version="1.0.1"; sha256="155ibah6qg5xdyp8vnpwgv0clqhr6ys3310dd9sipawz0730kcgw"; depends=[Rssa]; }; Visualize_CRAN_Downloads = derive2 { name="Visualize.CRAN.Downloads"; version="1.0.1"; sha256="0z2v2izn4aj3i6f5gh8r7pkrqpbb82bv9v4s4vqxgm066a51m4p2"; depends=[cranlogs htmlwidgets plotly]; }; - VisualizeSimon2Stage = derive2 { name="VisualizeSimon2Stage"; version="0.1.0"; sha256="19x4x6liv6782pxc9ai82m4g2z5xv9m5d3snl7k7vfnpqia71rh1"; depends=[ggplot2]; }; + VisualizeSimon2Stage = derive2 { name="VisualizeSimon2Stage"; version="0.1.1"; sha256="1xb001jdhf0z96zg51pkg9jng4nb4f7asqip7s5kx46fmzd1343s"; depends=[ggplot2]; }; VorteksExport = derive2 { name="VorteksExport"; version="0.1.8"; sha256="0r9wmd9bdarjkqmpwp85xz27nbyhjkcpxm8qb8bqjmxq4nds6nxx"; depends=[]; }; Voss = derive2 { name="Voss"; version="0.1.5"; sha256="00f3ljm85z8gr1qyc6nj9g35ywzm78khy8r82wb5ys8fx68n0vwl"; depends=[fields]; }; VoxR = derive2 { name="VoxR"; version="1.0.0"; sha256="16r9ggc5x889g8rjqvp1q2kgf5asjzhykd1ldjy3ny9m48p501ad"; depends=[circular data_table dplyr fastcluster FNN geometry raster Rfast rgl]; }; @@ -5535,7 +5550,7 @@ in with self; { XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.6"; sha256="1yd4mbsa6y69lfyx78lda5a65jj6zahxi2yjbn6vfr0l9pvvjcxj"; depends=[rJava]; }; XLS = derive2 { name="XLS"; version="0.1.0"; sha256="0a4jbfz9x9rn4k5v7qh3r9p7pal4piqg01469237lkq00m3lijy5"; depends=[mpoly]; }; - XML = derive2 { name="XML"; version="3.99-0.12"; sha256="053dlc1762qjqmqiq0sb9qnrpg8rx1a8inizq1fl1gw6r0jr886b"; depends=[]; }; + XML = derive2 { name="XML"; version="3.99-0.13"; sha256="0fppx0jnqxx3l7y8ivb56sq0fjcqv3fn226i4s03mi7hwak6iic5"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; @@ -5556,12 +5571,13 @@ in with self; { Z10 = derive2 { name="Z10"; version="0.1.0"; sha256="02kxlzplmss68zj1z97fvpcjyhhpic9hlx8f5j3gqn3m1mqm1dja"; depends=[dplyr lubridate magrittr rjson stringr]; }; ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; + ZINAR1 = derive2 { name="ZINAR1"; version="0.1.0"; sha256="1didfjb4215k9q82n1vaqln6f7fszsycsflydak2zl7xwficwhy6"; depends=[gamlss_dist gtools MASS scales statmod VGAM]; }; ZINARp = derive2 { name="ZINARp"; version="0.1.0"; sha256="1s5nvxcc7nw2kz90i7fqw5fi2qzzbsm5ppn92695v44q38h8jw9s"; depends=[progress]; }; ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.2"; sha256="0j56smgf44fki70jc6aypksbl70pyppc6s3xv82yrq5rndym077k"; depends=[MASS Rcpp]; }; ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; - ZVCV = derive2 { name="ZVCV"; version="2.1.1"; sha256="0gc76j9i8fkm2v638nyzzb1qxl4zmapbspkkaffb8gi5qyjja448"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; + ZVCV = derive2 { name="ZVCV"; version="2.1.2"; sha256="0ws0v7i6r7skb8lv6j718k29v5qsy1b007jxidv81iv0jcz9zfpy"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; ZetaSuite = derive2 { name="ZetaSuite"; version="1.0.1"; sha256="10b0acz88vc80x49wwv581abym75wswi4z92mnl4xn0vw62vjpqa"; depends=[dplyr e1071 ggplot2 gridExtra mixtools RColorBrewer reshape2 Rtsne]; }; ZillowR = derive2 { name="ZillowR"; version="1.0.0"; sha256="1q0hdm654p6vkmajwrhx18ifm9sc4czdfd7cabhkqdky4p07c89r"; depends=[RCurl XML]; }; @@ -5586,11 +5602,11 @@ in with self; { abclass = derive2 { name="abclass"; version="0.4.0"; sha256="1cg8xfzxya585wzk6y2kf4flgjxlspzqqqksbig8nlxmwxxj413p"; depends=[Rcpp RcppArmadillo]; }; abcrf = derive2 { name="abcrf"; version="1.9"; sha256="08mh1a6gxp0mfx6qnp1qzcrfx7xp64qj9kad4ziyswfx22ykdsxi"; depends=[doParallel foreach MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; abcrlda = derive2 { name="abcrlda"; version="1.0.3"; sha256="04pcdnk2szfpc2ylcw5ds7y895ivy03bycal03kxw7cwylzxasks"; depends=[]; }; - abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; }; + abctools = derive2 { name="abctools"; version="1.1.4"; sha256="02c473fqj7yd27flma2x7flqzqbrnba2xfcjy466nww0sm1vvhjg"; depends=[abc abind Hmisc plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abdiv = derive2 { name="abdiv"; version="0.2.0"; sha256="053l94br8sdy30078ssncq5i5zvdxa3m72ymbwbh0cm3zmsljj29"; depends=[ape]; }; abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; }; - abess = derive2 { name="abess"; version="0.4.5"; sha256="0lv9cggbc33xpc3h6a8nsa72r7217lb4qzwvxmy7kg4f6ny1r0rs"; depends=[MASS Matrix Rcpp RcppEigen]; }; + abess = derive2 { name="abess"; version="0.4.6"; sha256="08dyhn8a5lnizlyj33i1fr4mh52yzcnla4q9sanfg17705vvjk6m"; depends=[MASS Matrix Rcpp RcppEigen]; }; abglasso = derive2 { name="abglasso"; version="0.1.1"; sha256="0h8p912l0202wyr5vjsbzw5mr70m56ab39wv833g6c4c3187479y"; depends=[MASS pracma statmod]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjData = derive2 { name="abjData"; version="1.1.2"; sha256="0q7l9lxm41pjkdv98axx87wcxjxfyccfwi2k1b29g07pfjszs0hv"; depends=[]; }; @@ -5634,7 +5650,7 @@ in with self; { act = derive2 { name="act"; version="1.1.9"; sha256="094sm7afkjrgyhc1p7wj7akrlm65fxwkljgnlldq0z2bf2df07ab"; depends=[openxlsx progress stringi stringr textutils XML xml2]; }; actel = derive2 { name="actel"; version="1.2.1"; sha256="10gv6vc921ma6ckck9807j3j7z0m8kalwv5aj8xg6i2yqnia2zgs"; depends=[circular data_table DiagrammeR DiagrammeRsvg fasttime ggplot2 knitr readr reshape2 rmarkdown rsvg scales stringi stringr svglite]; }; actilifecounts = derive2 { name="actilifecounts"; version="1.1.0"; sha256="1v423byxanbvqk3s76s67r6ivqcg3ld4yddcvf7cmwwlrkd72ck4"; depends=[gsignal pracma]; }; - activAnalyzer = derive2 { name="activAnalyzer"; version="1.0.5"; sha256="1xy98lrlq9rn3v5699jw031wka4fyd7gydgxd5897amnc9in9z31"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; + activAnalyzer = derive2 { name="activAnalyzer"; version="1.1.0"; sha256="1fmh7jyvxlik229g136qvd1flzgklv8yn1i60lvngw29zkw95cvn"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; activatr = derive2 { name="activatr"; version="0.1.0"; sha256="0c0sn0b5w1k7kgrx8b6vanamlxsr9nqvkwhm0d8imghq8wl90h43"; depends=[dplyr geosphere ggmap glue httr lubridate magrittr rlang tibble timetk xml2]; }; activegp = derive2 { name="activegp"; version="1.1.0"; sha256="1yfib5q649kag45ryyqsbq9lq9yd74rrjjk65a6c9rkfa4f6w8xv"; depends=[hetGP lhs MASS numDeriv Rcpp RcppArmadillo RcppProgress]; }; @@ -5654,11 +5670,12 @@ in with self; { adana = derive2 { name="adana"; version="1.1.0"; sha256="0zi3a17rapc1z074k3yzgjv2b6ba6c9d54b1hm0ivvgfd335981f"; depends=[optimx ROI ROI_plugin_optimx]; }; adapt4pv = derive2 { name="adapt4pv"; version="0.2-2"; sha256="08zgzidw0wmpvhzsn4h8yhzgc45zh16grjp4y8mcc9lhk7pikhy5"; depends=[doParallel foreach glmnet Matrix speedglm xgboost]; }; adaptDiag = derive2 { name="adaptDiag"; version="0.1.0"; sha256="02xpphdhvryc06yji89mn7m2djgkpy19ph4sd52rhfsma7xn6hyf"; depends=[doParallel extraDistr foreach pbmcapply]; }; + adaptIVPT = derive2 { name="adaptIVPT"; version="1.0.0"; sha256="1zjz61zk0q9d1ih3ghzmiz1sxjpdypbx1vl72iw51sqz0nl89n95"; depends=[Rcpp RcppArmadillo RcppProgress rgl]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.4"; sha256="0yydliqhkz1y8lm4sb2biikbk8wmcyfqmamhm059843yk46nr6an"; depends=[coda Matrix ramcmc]; }; adaptMT = derive2 { name="adaptMT"; version="1.0.0"; sha256="1yllz1zd4cryf5bj8b2lcrj6zl79yjkllyh9p02ikryy5qmg419b"; depends=[]; }; adaptTest = derive2 { name="adaptTest"; version="1.1"; sha256="1qfhb3c64a5pl23vk7z6a3h46yb69cvzp1bpxnpybhxs42s80l5q"; depends=[lattice]; }; adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; - adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; + adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.3"; sha256="1766b3d9ysa9axfxqwy6gzj0z8hsl34pic6l63nbidqas55vnjqa"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; adaptr = derive2 { name="adaptr"; version="1.1.1"; sha256="0vq3qavydqyd3vyv6jpgig2qrv8lcnbyy81n3k8sbfcf16p7p0ip"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.2"; sha256="00npcl2js9vj5r3l66cp5d2l807klia581pig1gsyjjq4rvmfa7v"; depends=[coda Matrix MCMCpack mvtnorm spatstat spatstat_geom]; }; @@ -5673,7 +5690,7 @@ in with self; { additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4.1"; sha256="00kzfv86z6kk0gvbz9mg3p6xi5fb8cn74rhslr17rdpd02md0884"; depends=[]; }; addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; - ade4 = derive2 { name="ade4"; version="1.7-19"; sha256="1vv5y6badksnpjb3bcphhjdzzh6i2grmwnsalcf2cfpr3y412lf8"; depends=[MASS pixmap sp]; }; + ade4 = derive2 { name="ade4"; version="1.7-20"; sha256="0yxd9dgci3rzz807wsb76wis12ipgjv9w86smdyz20jrnn45giyx"; depends=[MASS pixmap sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-1"; sha256="1y0f62n8iv002ayd1nyl3bmszw558niwnfzjpvk0a7cbvfdyvwcg"; depends=[ade4 adegraphics lattice]; }; adea = derive2 { name="adea"; version="1.3.1"; sha256="0jvxgqwfga4gsn5jcdklfq2qci3xyvmkdfjappjwf72swb2rkv0n"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; adegenet = derive2 { name="adegenet"; version="2.1.8"; sha256="09ahgz1ddsdn30fmi5kimdcrcnw18ryqpjcixhyp4xz0xwz2rmw0"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny vegan]; }; @@ -5688,20 +5705,21 @@ in with self; { adeptdata = derive2 { name="adeptdata"; version="1.1"; sha256="0wzavbwc1slyr3wh5jkapghpa748rc86pbw5b4gcxki73r08r7j2"; depends=[]; }; adespatial = derive2 { name="adespatial"; version="0.3-20"; sha256="1sv4kc30l226x24s3gvv8dq0p2y33h8vv474bfpm4z08cfah13pq"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; adfExplorer = derive2 { name="adfExplorer"; version="0.1.6"; sha256="06sk68580i7jg9lk4jj64ns04y4q6amzsh0k7nxhfdib107yajnp"; depends=[]; }; + adformR = derive2 { name="adformR"; version="0.1.0"; sha256="02krkpqsj53j4mprbw25bycbb2xlhcgnglcp0dl24zw44mfxy9n7"; depends=[jsonlite]; }; adheRenceRX = derive2 { name="adheRenceRX"; version="1.0.0"; sha256="19kimj88dmcc8mq3s4l7pph9jz8p57gbjyn0pn5zkrcjdrwncslm"; depends=[anytime dplyr lubridate purrr Rcpp rlang tidyr]; }; adimpro = derive2 { name="adimpro"; version="0.9.3"; sha256="0njw38vcdm02sni193nj10mpv7hiklpamrkjlz5bnhjxx9mvf4cl"; depends=[awsMethods]; }; adiv = derive2 { name="adiv"; version="2.2"; sha256="0qmykswwirhas4rrwb4jaqicjkqsmq6k11718hzk65h3xdnpg6kr"; depends=[ade4 adegraphics ape cluster lpSolve phylobase phytools rgl]; }; adjROC = derive2 { name="adjROC"; version="0.2.0"; sha256="0ipvp7f7asg8pbzbm3rnn8hp20gs3aqispvagddjw1yd39h0zgrk"; depends=[ggplot2 ROCit]; }; adjSURVCI = derive2 { name="adjSURVCI"; version="1.0"; sha256="0nv6m7ds57d0h44d745s0424ssrgn39ihd294dgrzrpmh8gxhq95"; depends=[Rcpp RcppArmadillo survival]; }; adjclust = derive2 { name="adjclust"; version="0.6.6"; sha256="0kin57r12g1cv4pi6br3c71rpjhfvpkysx7jly3wf0ilj6bfs6vk"; depends=[capushe Matrix Rcpp RcppArmadillo sparseMatrixStats]; }; - adjustedCurves = derive2 { name="adjustedCurves"; version="0.9.0"; sha256="1p8zfswd9b98mgffq9znq7npajr7gh0v82faxajxh4mxqfb1rdjk"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; + adjustedCurves = derive2 { name="adjustedCurves"; version="0.9.1"; sha256="1mhl4mzw4286kp9khlv2kpfvzhnvwkmdicwc0z7mlqyi46znylib"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; - adlift = derive2 { name="adlift"; version="1.4-3"; sha256="1lj99vm014fglw57qc00wzxbx4kzb4ky5iisqd756dfg3k41wa55"; depends=[EbayesThresh]; }; - admiral = derive2 { name="admiral"; version="0.8.4"; sha256="0d7ikgxyvb14p3g3vjjkqhr5yhm7pa3wfr9mb3ann42lnzn5950b"; depends=[admiraldev assertthat dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admiral_test = derive2 { name="admiral.test"; version="0.3.0"; sha256="14b53g951aay1xq9qz1dw07lm00ijd244laabcxmid1ndqyqbjfr"; depends=[]; }; - admiraldev = derive2 { name="admiraldev"; version="0.1.0"; sha256="07lbb0cgadbs0yvn0rm713hm66pwqmzmfryy0h7p6jd6kqmx014a"; depends=[assertthat dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admiralonco = derive2 { name="admiralonco"; version="0.1.0"; sha256="17c52zaqw3p9bd4gi93rbam367rldp12xsk1ayl4dyxyamazcksg"; depends=[admiral admiraldev dplyr lubridate magrittr rlang tidyselect]; }; + adlift = derive2 { name="adlift"; version="1.4-4"; sha256="1rxwsmic17kgbhh50m87mh8ag8l6b1n4p96k0qn6mkgqfiqngam5"; depends=[EbayesThresh]; }; + admiral = derive2 { name="admiral"; version="0.9.0"; sha256="1qylcl7s4sh91h18qpj6s9l61pc1c8iy1nmp7qgl1rcb6xhkn49x"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiral_test = derive2 { name="admiral.test"; version="0.4.0"; sha256="1abf7zrqj2bia784rvl3y4awyi3vpaj57lqyak2zpxiykhs8fg4s"; depends=[]; }; + admiraldev = derive2 { name="admiraldev"; version="0.2.0"; sha256="0rclhf3d2mhsbxc4imp14kpjxw6g0hdy6v4y86qnvvyrb3cik46v"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiralonco = derive2 { name="admiralonco"; version="0.2.0"; sha256="1dimbbj2yb24zyfgxqkhgkq0rk69hs8yy8xq4k05v99rwj3lyng8"; depends=[admiral admiraldev dplyr lifecycle lubridate magrittr rlang tidyselect]; }; admisc = derive2 { name="admisc"; version="0.30"; sha256="01b2qjxz0qicqjm1swvm04qkiwhr7zjn7lhqv26l6rj4yb43y339"; depends=[]; }; admix = derive2 { name="admix"; version="0.4.0"; sha256="1vfga2l6yay4l8q53siibf1ljr77fmcgbddlag414jmv2awckr0c"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; @@ -5709,8 +5727,8 @@ in with self; { adnuts = derive2 { name="adnuts"; version="1.1.2"; sha256="0nkciv5sfj3bws6kpgrnaq4ziasibaz44w64mb86zmr8420nyc1q"; depends=[ellipse ggplot2 R2admb rlang rstan snowfall]; }; adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.3.3"; sha256="1x1mkprp42xyfgiyffkj9lwzfv79dfwdg9alxfcpmgcvcrnbxcwi"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tibble tidyr vctrs]; }; adoptr = derive2 { name="adoptr"; version="1.0.0"; sha256="08d2fsqh5vczfr9cc8l554p6f0x85g58i5zg5j2m0chlmcispfk2"; depends=[glue nloptr]; }; - adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; }; - ads = derive2 { name="ads"; version="1.5-7"; sha256="016zpkpf1c57djqn31qwpp3qk65xdacl7x7s72y4a02pimk735bv"; depends=[ade4 spatstat_geom]; }; + adpss = derive2 { name="adpss"; version="0.1.2"; sha256="1nk12yn1n483scnphf8pab8w633dk64c8n17zlq851zywbncs0gk"; depends=[Rcpp]; }; + ads = derive2 { name="ads"; version="1.5-8"; sha256="01iyjkxk2d86nl3kd498xaaw4b8y9l142pkbyr49w1h299d3d7f7"; depends=[ade4 spatstat_geom]; }; adsDataHubR = derive2 { name="adsDataHubR"; version="0.1.1"; sha256="19csivbg3f0g2r11l7jrciqq2lhg50km7qv29xfs6ba5cf678hb9"; depends=[httr jsonlite lubridate]; }; adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; adw = derive2 { name="adw"; version="0.2.1"; sha256="0yynzw4sxz42vqq4dxb0cs123mbir5nnsq45v9agjw889m7k7prj"; depends=[geosphere terra]; }; @@ -5718,18 +5736,19 @@ in with self; { adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afdx = derive2 { name="afdx"; version="1.1.1"; sha256="1654vxakdd11b5zhwy1vcv127xk5rifan6fs1k6w1qsk74j4drqv"; depends=[dplyr magrittr maxLik tidyr]; }; - afex = derive2 { name="afex"; version="1.1-1"; sha256="09q426s2zmzxx5ilxy0x5mflpb38pl075ss1s8xvpswkn6cia0b6"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; + afex = derive2 { name="afex"; version="1.2-0"; sha256="1hii6mx4qbmv4m1hy44sp19xf0r7mc68p767bwc58qrgpawgymwb"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; affinity = derive2 { name="affinity"; version="0.2.5"; sha256="0nfh3g8nifv5773pihgzxh62wa837i2dk1kgf15z28cb5xfj2y8h"; depends=[raster reproj]; }; affinitymatrix = derive2 { name="affinitymatrix"; version="0.1.0"; sha256="10i7wzl4xiphj5f466ga7c4ha3mkyqn63x1z0jyx50m0b84sggq1"; depends=[expm ggplot2 ggrepel Hmisc MASS]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="2.1"; sha256="0vcg4gphs0yxdxsgw7kj9r3hvjpfs2z8sjvllvfw9ki3y7jy5jb8"; depends=[spatstat spatstat_geom]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; afpt = derive2 { name="afpt"; version="1.1.0.2"; sha256="1z0r4r7prxbhadmkdg6345g0b5vq9dqyyw9hh3fpad9zkc7k6xbc"; depends=[]; }; - africamonitor = derive2 { name="africamonitor"; version="0.2.1"; sha256="02fgl63f460v3ssh5z5nd0gw3rny3nxs245am6slnk1l3v1pi5cj"; depends=[collapse data_table DBI RMySQL]; }; + africamonitor = derive2 { name="africamonitor"; version="0.2.2"; sha256="06k600wbvzxy3lk7niil84xndcnbar88z07qxyqwklvl07jcpc9h"; depends=[collapse data_table DBI RMySQL]; }; aftgee = derive2 { name="aftgee"; version="1.1.6"; sha256="1sq6d6zkr4whg61phz22gb5zh7wxg2il39w2g5s812i4hiipqj4r"; depends=[BB geepack MASS survival]; }; afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; afttest = derive2 { name="afttest"; version="4.2.1.1"; sha256="06l11gjfv2a4jsdi7f88w7pk04a2mfl2jx969z7w4n4nlmz0bz8z"; depends=[aftgee ggplot2 gridExtra Rcpp RcppArmadillo survival]; }; ag5Tools = derive2 { name="ag5Tools"; version="0.0.1"; sha256="1390acslndzvvhdc6pk9cfvhval1wqgiic353f03qv0rvhxbyzad"; depends=[fs reticulate terra]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; + ageg = derive2 { name="ageg"; version="1.0.0"; sha256="0dcmwgznxf1jjsifpm3nn3jk25mm27l6f6f6jfi2n3crxgqfizyv"; depends=[]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; aghq = derive2 { name="aghq"; version="0.4.0"; sha256="12zzadx0qfh5wg8092w777c9ymd1m6gq3gwmfp9pf9bn3s31vij3"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; @@ -5759,15 +5778,18 @@ in with self; { aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; airGR = derive2 { name="airGR"; version="1.7.0"; sha256="0miqkhapw3ch4wss8dkygf5j5rj9jwdm7xdb4c5jfdnxdbbsxwjs"; depends=[]; }; + airGRdatasets = derive2 { name="airGRdatasets"; version="0.1.4"; sha256="1gz7irz0kzdni0dksi4qa0xa6n018l31xjdh4w1r40v38g4c6hai"; depends=[]; }; airGRdatassim = derive2 { name="airGRdatassim"; version="0.1.3"; sha256="05c108rcj4rlzrbabai95abxhyjsrrrsgvds4zamvyzpjl64f9ps"; depends=[airGR]; }; airGRiwrm = derive2 { name="airGRiwrm"; version="0.6.1"; sha256="1dr7xg8a6xfdihmf4x03wm268iz78lks15fx9hmpw6sp15xv5kdj"; depends=[airGR DiagrammeR dplyr]; }; airGRteaching = derive2 { name="airGRteaching"; version="0.2.13"; sha256="1j95b1rz83f1x8gp6107rdk9g81j47yhgdlf8y17f0ffgrvwwfky"; depends=[airGR dygraphs markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.2"; sha256="0z9knqdl7ihx2vph154qi1lh4s6yvlcw6kwry8k47mhh3p7pynsd"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; + airnow = derive2 { name="airnow"; version="0.1.0"; sha256="0dpx2hkh0y6769pi8xzyi327lygxysckqz85z40ps50ghw02r8bh"; depends=[cli glue httr2 jsonlite lifecycle rlang tibble]; }; airportr = derive2 { name="airportr"; version="0.1.3"; sha256="1h8h0cdfqgxv8cf9hp82sx5n4a1z88qyyxicj7d2kmmybqqz2r5n"; depends=[dplyr]; }; airports = derive2 { name="airports"; version="0.1.0"; sha256="1ahfqqfcvr731hj0h7d00jd87h1adiryh42sv4mh318lk5rglm6f"; depends=[]; }; airqualityES = derive2 { name="airqualityES"; version="1.0.0"; sha256="1kf673ajk06ggy9524lip5flpfgq0gql7d46kgnri8l3kbzw7zcj"; depends=[tibble]; }; airr = derive2 { name="airr"; version="1.4.1"; sha256="1zr8nzhy75v82sk1lxp8xk34hxz84zjk9nrgx10kzrycpyrbfjw0"; depends=[jsonlite readr stringi yaml]; }; airt = derive2 { name="airt"; version="0.2.1"; sha256="1az5fd9zr6lgmcim4v6rzckl9yyw9myvhmzs76n71864gnzkbna4"; depends=[dplyr EstCRM magrittr mirt pracma rlang tibble tidyr]; }; + aisoph = derive2 { name="aisoph"; version="0.2"; sha256="1c64slva2yb3phflxslxbpp4iydxx92hrj9xi7dv1bsbag8n9xd7"; depends=[Iso Rcpp survival]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akc = derive2 { name="akc"; version="0.9.8.1"; sha256="0prqvjbcm9aagjhxpzidi2jr2yddzqwqrwp5rm3ki8215fwr9mln"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidyfst tidygraph tidytext]; }; akiFlagger = derive2 { name="akiFlagger"; version="0.3.0"; sha256="08z5jvigzvl3af17dd8l6zil0s694i22x0a7xvb3n4fvg6fargz4"; depends=[data_table dplyr shiny zoo]; }; @@ -5791,7 +5813,7 @@ in with self; { alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5.1"; sha256="00117cj01psax4rjvy2nja5r2ss9l8zzjicczh46kp401i1ghmwc"; depends=[dynamicTreeCut]; }; allestimates = derive2 { name="allestimates"; version="0.2.2"; sha256="0g0j6q810665lfa3a9xwmv0hkgcp2a8g0xq0vfpvyykyqykgid3z"; depends=[broom dplyr ggplot2 speedglm stringr survival tibble tidyr]; }; - allhomes = derive2 { name="allhomes"; version="0.3.0"; sha256="1z39qd7hkl2xy0lhf8sgc4rjf4ihi3zbsadchc97h7p7cn9mjbpk"; depends=[dplyr htmltab httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; }; + allomr = derive2 { name="allomr"; version="0.1.0"; sha256="0iprldmqww928m3mic3lcb8vhsr4ihrn83lvlx3wr3n7zch72771"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; almanac = derive2 { name="almanac"; version="0.1.1"; sha256="0qsczk74ihy7ac5c4dzd6ax5gfmr56wfnjxg396qc2c3xykb7dd5"; depends=[glue lubridate magrittr R6 rlang V8 vctrs]; }; alookr = derive2 { name="alookr"; version="0.3.7"; sha256="0sdwphzxjh8y4gi3pnsdddra0x085h30m520j8im25z1bhxp0sq7"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics parallelly party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect xgboost]; }; @@ -5803,7 +5825,7 @@ in with self; { alphashape3d = derive2 { name="alphashape3d"; version="1.3.1"; sha256="0d3rxvsb0yl900dlpr1v5w56z8ci9rbp5dlwx7l2laifyprsns2i"; depends=[geometry rgl]; }; alphastable = derive2 { name="alphastable"; version="0.2.1"; sha256="01gwrcxlj2jlb8axs5qmrsixk3a8b7044ypyjg6dpdcxfbcf5fvp"; depends=[mvtnorm nlme nnls stabledist]; }; alphavantager = derive2 { name="alphavantager"; version="0.1.2"; sha256="0c97p8njga4xffvsa0kj0s4y0agjr44y9bnjxs5phm1ldcqjs0yj"; depends=[dplyr glue httr jsonlite purrr readr stringr tibble tidyr timetk]; }; - alqrfe = derive2 { name="alqrfe"; version="1.0"; sha256="0prrrbkbqq9k9xx2b6ism6wvn90iwy9sx57g9f9c8djhkmyd90pc"; depends=[MASS Rcpp RcppArmadillo]; }; + alqrfe = derive2 { name="alqrfe"; version="1.1"; sha256="0lzw1sk4iaqzmg1a39v3wxcgj9hchyjcxq7b3nm83al8r75rfvdk"; depends=[MASS Rcpp RcppArmadillo]; }; alr4 = derive2 { name="alr4"; version="1.0.6"; sha256="0v98yzi0fcjxq0ak0w05001h8m9nfa9l0ann9bqvz8bwcmb3jlr2"; depends=[car effects]; }; altR2 = derive2 { name="altR2"; version="1.0.0"; sha256="15nvbq3n76p2857ipyf3q6rs2mwjqsp9gr3rmzbjfm8lrj0faxsv"; depends=[gsl purrr]; }; altadata = derive2 { name="altadata"; version="0.1.1"; sha256="0wv8a0423k0gw5i0qgz5d3wqw22a9pk7r80fp33pn0mxq9b54zdv"; depends=[httr jsonlite]; }; @@ -5852,15 +5874,16 @@ in with self; { aniview = derive2 { name="aniview"; version="0.1.0"; sha256="1klakkmdk4xllaxd0pllvxi4396n6rz2idz55niy91mp0fhcjhwf"; depends=[htmltools jsonlite]; }; anndata = derive2 { name="anndata"; version="0.7.5.5"; sha256="1ync82qp0v6zszibz8bwhlyknf99v3iki8cwq4n4vwmg9z7hrb54"; depends=[assertthat Matrix R6 reticulate]; }; annotater = derive2 { name="annotater"; version="0.2.2"; sha256="1yzsamy4zrr7v0kjnc3x034a7ffw1zj7cc5dx11pcwyhk88yba7z"; depends=[dplyr purrr readr rlang rstudioapi stringi stringr tibble tidyr]; }; + annotator = derive2 { name="annotator"; version="0.0.1"; sha256="1llr17ac1sr5ih8k5gy8rzmbjhqr3iv0xz3bh3havhlcwlcrpvj0"; depends=[glue htmlwidgets imager knitr shiny stringr]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; anomalize = derive2 { name="anomalize"; version="0.2.2"; sha256="13ncx17hdwv7799s7y6p3wvf59dad97y8rs9p56cbd91f6jkjgs5"; depends=[cli crayon dplyr ggplot2 glue purrr rlang rstudioapi sweep tibble tibbletime tidyr timetk]; }; anomaly = derive2 { name="anomaly"; version="4.0.2"; sha256="110rdzz6l80vjc0q0gb0f829vb70r97p19ywa7gbl2cbkj2s1cci"; depends=[assertive BH caTools cowplot dplyr ggplot2 magrittr Rcpp Rdpack reshape2 rlang robust robustbase runner xts zoo]; }; anovir = derive2 { name="anovir"; version="0.1.0"; sha256="1x7lvj7xchbv6siyc9miivmf0rlxrjflal4icyvbxgdr285s2s9w"; depends=[bbmle]; }; anscombiser = derive2 { name="anscombiser"; version="1.1.0"; sha256="1hakvxgc50zshi5kplg90r0499mihhwvhhz7bshndjxxci1ashkl"; depends=[]; }; - antaresEditObject = derive2 { name="antaresEditObject"; version="0.3.0"; sha256="04rdq3kbliac1iaxqflf3qhh58qgl9pxb2qh44wkknb91ga0845x"; depends=[antaresRead assertthat data_table doParallel pbapply whisker]; }; + antaresEditObject = derive2 { name="antaresEditObject"; version="0.4.0"; sha256="03zpg86hx3a99vvhbyj06b34lqd791l0qbs4a3g8xnd2gkmmjr75"; depends=[antaresRead assertthat cli data_table doParallel httr jsonlite pbapply whisker]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.3.0"; sha256="12pvg2w7j0aaqn2xf5rgr4d25002xjbisxiva0q7rmi35jl1xkqh"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; - antaresViz = derive2 { name="antaresViz"; version="0.17"; sha256="18f398qvy88w9rlkd08h5gvk7vwh349cjxi4pa59s5fs4ihhmdd2"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; + antaresRead = derive2 { name="antaresRead"; version="2.3.1"; sha256="1hiyjg4qa6qpyfbwlwa787sacf23z1mjaws24nj3h18zvwq2wk87"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; + antaresViz = derive2 { name="antaresViz"; version="0.17.1"; sha256="072nh0x0qrbi9va27r20vjzjsbjriqbzbpwc7vl40pimjd0hd2x4"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="1.0.0"; sha256="169h2vhdd2kxh4228lx1ab3fipixvka4686ngx6h8g15li9828s9"; depends=[survey]; }; anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; anticlust = derive2 { name="anticlust"; version="0.6.1"; sha256="1f06968i5hpfavcwmcqij0mb13jhp02gbkqiijilyiz2kc8p0nfc"; depends=[Matrix RANN]; }; @@ -5870,42 +5893,43 @@ in with self; { anybadger = derive2 { name="anybadger"; version="0.1.0"; sha256="1aa09v5k5nlvhlir8saa5gnrq7cb1djbdc8y85cjgb3skay94hzv"; depends=[config glue magrittr purrr R6]; }; anyflights = derive2 { name="anyflights"; version="0.3.3"; sha256="1iwiil15zc4zq6y7ns8r6w27w75v72fm3syn46bxrspw0iy0lj3v"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; anytime = derive2 { name="anytime"; version="0.3.9"; sha256="0jjpqynai5nd7mfy1smb44356f3d5bmpxhs1i9x9jw5c959c35hh"; depends=[BH Rcpp]; }; - ao = derive2 { name="ao"; version="0.2.3"; sha256="165hgrxj2gsvkczb32480i31zs82c5mamvy2c47gsz777mw9sw1h"; depends=[ggplot2 lifecycle optimizeR rlang]; }; + ao = derive2 { name="ao"; version="0.2.4"; sha256="1wdnb1hlhi52y0jg9fpxzvhmn1sjgsh4g3vg7vc0jlbsjw9fssp9"; depends=[ggplot2 optimizeR rlang]; }; aod = derive2 { name="aod"; version="1.3.2"; sha256="0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.2"; sha256="0rd4xr7nwac49m8h4pr8hv79giyv2rrlnz78r7mxa6lpgkmgqp4d"; depends=[]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; aopdata = derive2 { name="aopdata"; version="1.0.1"; sha256="11d9aipqcasrpi0fl2qnnqmg4wlsj3y9vy9cym4ka9jn2x1xxjns"; depends=[checkmate curl data_table httr sf]; }; aoristic = derive2 { name="aoristic"; version="1.1.1"; sha256="1zanf21qmnjmwzzccpdm1bwnyhv9zqjirrylfwmbpkzlmvp0a4pb"; depends=[dplyr ggplot2 lubridate openxlsx plyr scales tidyr]; }; - aorsf = derive2 { name="aorsf"; version="0.0.3"; sha256="1ckv7bz62cxmlj7i00piqyqk851fqk8rq2xk54hchvhbqi9x9s1w"; depends=[data_table Rcpp RcppArmadillo]; }; + aorsf = derive2 { name="aorsf"; version="0.0.4"; sha256="1pq4cllksky81qw0pblygsssxmw1rarygzzkmsln9jlcjgwxvw3f"; depends=[collapse data_table Rcpp RcppArmadillo]; }; aos = derive2 { name="aos"; version="0.1.0"; sha256="0nkl7dkqjfp4ahwmn3vs0akx6x2brf0m5gzzzx6pf54j1qwypbhf"; depends=[htmltools jsonlite]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0.1"; sha256="1wxhfp21ir9yv4wnbh7ay2x05k822nsyd5smlxmk67wm5w4vr1v1"; depends=[ape coda cubature pbapply quantreg]; }; apa = derive2 { name="apa"; version="0.3.3"; sha256="1nvhl5fqramsdrkpl1nmgr1vmki5c1lkdi1kkx7ihf0cz35f7c2a"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.8"; sha256="0jy6x0z9ivqqkjihqhyg3fxyghqa9gs6q2bpxzjdnbcb3kq151vd"; depends=[boot broom car dplyr MBESS tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; - apache_sedona = derive2 { name="apache.sedona"; version="1.2.1"; sha256="0iif2j6nsafjs496vj8k04z9bgzfv4y92j0a6r0a51c0i7a9k5yx"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; + apache_sedona = derive2 { name="apache.sedona"; version="1.3.0"; sha256="0d9l0n0qnjx42ia53s9fss856iz9caxaa876ccbcaxavh7l7km56"; depends=[dbplyr dplyr rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; - apcf = derive2 { name="apcf"; version="0.2.0"; sha256="0r107kl7s2zaa5mvm3926ww01k4brh4qn7y729f7l2lnmy3zidx5"; depends=[Rcpp wk]; }; + apcf = derive2 { name="apcf"; version="0.3.0"; sha256="194w409gz052a8gcsdn3v68sqjcwrhb1ck712nljd0iy1mgdz6cs"; depends=[Rcpp wk]; }; apcluster = derive2 { name="apcluster"; version="1.4.10"; sha256="1820j1xjlbmw6j2fwwv2g806dqpk5qrbbaqsrbrn6igql8pzf552"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="5.6-2"; sha256="0mqjsh7maczd02iwa4fb896q3kgd9jnlilq7y1yz18ch0c54aqlv"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.4"; sha256="1ddzbzpnc17yvbl5yfyp0widqlx48qwlh80xcmyzhv045s680rdk"; depends=[adegenet ape phangorn]; }; apexcharter = derive2 { name="apexcharter"; version="0.3.1"; sha256="1kvlsnsvgiz3akcqpiyxin264qpjbz3m8g98jgfwyiqkjhqs441a"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; - aphid = derive2 { name="aphid"; version="1.3.3"; sha256="1jqpn7w5sgy4k49qd9ci6yj89s55gzwl5w5ldw793mzpg6if7lfn"; depends=[kmer openssl Rcpp]; }; - aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; }; + aphid = derive2 { name="aphid"; version="1.3.5"; sha256="1pwr1i3wxh0l24cqp59q6n59p21v81fmgxkb4jmf50a3ggb1lcdj"; depends=[kmer openssl Rcpp]; }; api2lm = derive2 { name="api2lm"; version="0.1.4"; sha256="1hxamdf1332z8gfp5crvjhl26v9g3ibsg68vm0pas2aprh18rpjs"; depends=[]; }; apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplot = derive2 { name="aplot"; version="0.1.8"; sha256="17256cdn46cii97s0h2zmah9vs116ybnih78734lpkn7kmvdfcfr"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; + aplot = derive2 { name="aplot"; version="0.1.9"; sha256="04mv2jhkk47sqmm69dbcmy84han2k19sv6vnmk572xbm19i661xg"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.2.8"; sha256="129qa303fckan6n8zdgsa08720aiyv623rz5mdv4l2by53i7lb2s"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB stringr tibble]; }; + appleadsR = derive2 { name="appleadsR"; version="0.1.0"; sha256="19xkzykk6zdbswdkfix9nqnfgab4r9c21rqwpma1r6fjapsp81jf"; depends=[jsonlite]; }; appler = derive2 { name="appler"; version="0.1.4"; sha256="0a3xhr2zbzni81y00sa1d35spcd1f6blhnkmyf76wf00z3vhrk2i"; depends=[glue httr jsonlite rvest xml2]; }; applicable = derive2 { name="applicable"; version="0.1.0"; sha256="1n81aa5by0fd47wjksdl0zpzf0w4vgrns6iqv5i9lqs7g64zggs0"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; approxOT = derive2 { name="approxOT"; version="1.0.2"; sha256="1j17dcs4nxss81q1d3mf6h7nkzrq202n7pqb7phza085xmjvpksx"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; approxmatch = derive2 { name="approxmatch"; version="2.0"; sha256="1n6v1h4zf1nf8j1a5d0h95v6q8dff39v9061i7zzi9ci3lw04748"; depends=[]; }; + appsflyeR = derive2 { name="appsflyeR"; version="0.1.0"; sha256="1ch0cjxl7jzrdch3mz1cayc88mbf2dgp0l775c3li44204pxp8wl"; depends=[jsonlite]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; aprof = derive2 { name="aprof"; version="0.4.1"; sha256="14qclp88j4ygd4vrxxpgy2s9939wcajjsqycdzpvn64ws29sdpvh"; depends=[testthat]; }; apsimx = derive2 { name="apsimx"; version="2.3.1"; sha256="1d1ipzf9ahdb3540zjcyzj4dwx5v8b73av790ahhbmc128vdmspj"; depends=[DBI jsonlite knitr RSQLite xml2]; }; @@ -5929,10 +5953,11 @@ in with self; { archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; arcpullr = derive2 { name="arcpullr"; version="0.2.7"; sha256="1nbz5br6vm0ka9jn2cnkf2g90l6d0pzvma2x5dlq5arpg5jmca4b"; depends=[bslib dplyr DT ggplot2 httr jsonlite raster rgdal rlang sf tidyr]; }; - arctools = derive2 { name="arctools"; version="1.1.4"; sha256="0ldhmv2fs3gi5v5d36y8i1mbw3w4vf2h8f7avlk5zgywn46j75zf"; depends=[lubridate runstats]; }; + arctools = derive2 { name="arctools"; version="1.1.6"; sha256="01a1kmkmnwm8ryv1hr0w79ghbk844w7fnv1yiq9mmwrs4jbgfrcf"; depends=[lubridate runstats]; }; + ardl_nardl = derive2 { name="ardl.nardl"; version="1.2.1"; sha256="1hx2zhb1qxvg9adyx72ddw2b0b1c93qxk4zy6r7zqybcd3lrmqwb"; depends=[car dplyr gets lmtest nardl rlist sandwich stringr texreg tseries]; }; areabiplot = derive2 { name="areabiplot"; version="1.0.0"; sha256="0izgvlg174jbr3fm3qc8zh23kfs7hn9bwd40x6vm90iivrrgdcp7"; depends=[nipals]; }; areal = derive2 { name="areal"; version="0.1.8"; sha256="14hwif59lxjdf0crq5mp2w2rhz9b7l1b33r0ssd1j60ml2fv6488"; depends=[dplyr glue purrr rlang sf]; }; - areaplot = derive2 { name="areaplot"; version="1.2.2"; sha256="0vyhf3662ppcahaw2zrxgpcxcn8fysd6lhl8vgr7cs8kl6fm4x47"; depends=[]; }; + areaplot = derive2 { name="areaplot"; version="1.2.3"; sha256="1j342mgjfxca38j4xx0bp35fjdx1xsfp1czdlpahavg5xm94lwbf"; depends=[]; }; arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; arenar = derive2 { name="arenar"; version="0.2.0"; sha256="08b865v7ringqzm5m4ib4nrmlyqywir6bjj7alzmg06dy7mrl9s7"; depends=[auditor DALEX fairmodels gistr iBreakDown ingredients jsonlite plumber]; }; arfima = derive2 { name="arfima"; version="1.8-1"; sha256="1msbd52989yqxqxgapgjvzfzzpkr2w9dp7ig8racqpzwqnjhpswb"; depends=[ltsa]; }; @@ -5942,7 +5967,7 @@ in with self; { argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; argosfilter = derive2 { name="argosfilter"; version="0.70"; sha256="1cqhpq5z807azpc45d00031bhw5q69111jsblyqdp5bg6qinrj9c"; depends=[]; }; - argparse = derive2 { name="argparse"; version="2.1.6"; sha256="14p57nm0w3siqd473snzhpmnvsgl72x92pdcd64vhy2qg6nzmmra"; depends=[findpython jsonlite R6]; }; + argparse = derive2 { name="argparse"; version="2.2.1"; sha256="193pjjy4vkmzmsc1w69szafgrisvn08gddilbxcg671sdk0dxd7k"; depends=[findpython jsonlite R6]; }; argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; argus = derive2 { name="argus"; version="0.1"; sha256="0k016fpz03gzsy165cqk1gbszrk7xr330hxcnjl1d5r2hnfxgvxl"; depends=[Runuran]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; @@ -5956,12 +5981,12 @@ in with self; { aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.2.1"; sha256="1yzmqh7f3x5mzws7azxa6rgqv8kcm861y9pc5ppc0vsgz7fvpvvs"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; aroma_apd = derive2 { name="aroma.apd"; version="0.6.1"; sha256="0by8nss4m1hrd33bv9vdqgf67117a48y3wdkyc3q35anlz7kn3yk"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.7.0"; sha256="0d4wgc9vyr89i1588zh61f5wjsizv9j5y0j8zhrw65r9y8ffwa0w"; depends=[aroma_core future_apply matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; - aroma_core = derive2 { name="aroma.core"; version="3.2.2"; sha256="0ma84hhqn0g4pw0b8zkdcrz96z3j3lnw3yka0gd9861s80p33q1m"; depends=[BiocManager future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; + aroma_core = derive2 { name="aroma.core"; version="3.3.0"; sha256="12118xdb74c4b2ca5dq57zxkrrcjjji10b5a1qxpixkrc36bfskv"; depends=[BiocManager future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; arpr = derive2 { name="arpr"; version="0.1.2"; sha256="02qsvmgnyr7aqgpij8m5yg9cww8wbrg6a33vxxvy3sl9v5f7vzh5"; depends=[magrittr rlang]; }; arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="10.0.0"; sha256="04qsj68zsqcwkv1ryp4l0is474siyi1b64dy41fr74ryj7mbamg8"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="10.0.1"; sha256="0dwdi9sq7wv34ia6kg446pqf5za75hl6zrb2ly51p2zdr4g69p0y"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; @@ -5970,14 +5995,14 @@ in with self; { arules = derive2 { name="arules"; version="1.7-5"; sha256="0d04w28hl9gcrvkj0v0q77x4a89jhvzf1imw58xfgncap8mc6555"; depends=[generics Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.5"; sha256="13p876k3wg84khvzf6kkjpna0l9yjxyq43nh9dnpma7sidq5ldi0"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; - arulesSequences = derive2 { name="arulesSequences"; version="0.2-26"; sha256="09571bqqbf19w80nbs34k1zq54c6yyfcqm2a2jpkd41jmij6pvj5"; depends=[arules]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-27"; sha256="12x9zfl1qp88d28k7lpai0ksgkwvanqf7cw7ig6sjsg067x7pzz1"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.5-1"; sha256="06mqdqg5amcrb75lf77wilb9v8c7f50b54p0pk76q0jvirycqrzc"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.8-2"; sha256="05f0b9zl5zayrkqxfmpljwp2q3sbw8khrdqg5m3f6ic339f8iyka"; depends=[deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + asbio = derive2 { name="asbio"; version="1.8-3"; sha256="1p0hfgkfcnxdf2jivn1mm3rjdqs4arik6ajc1gc1mmdwfwh82s5x"; depends=[deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascentTraining = derive2 { name="ascentTraining"; version="1.0.0"; sha256="1dwmr33jc2fp9x51kzlqa4vib7xmzvz9a7qlfgvhxhld2bxlrrgi"; depends=[]; }; ascii = derive2 { name="ascii"; version="2.4"; sha256="0k675an7sl00bslx4yb6vvvgnp1kl244cfjljv632asqdm3rkmrv"; depends=[codetools digest survival]; }; asciiSetupReader = derive2 { name="asciiSetupReader"; version="2.4.0"; sha256="02s3p0qqa9h1kyx96c29blwgfkdm50p10kr14wklh19gibiznyfj"; depends=[data_table haven miniUI readr rstudioapi shiny stringr vroom zoo]; }; - asciicast = derive2 { name="asciicast"; version="2.2.0"; sha256="14pbhywiv99hmmmmsr55yf8i1lwryzxply2gwikpddiqfl07fi96"; depends=[cli curl jsonlite magick processx tibble V8 withr]; }; + asciicast = derive2 { name="asciicast"; version="2.3.0"; sha256="1nz0gbfk92p8c4940wmhm28l1jvgx459hspjbjl6b52v897wv3q2"; depends=[cli curl jsonlite magick processx tibble V8 withr]; }; asciichartr = derive2 { name="asciichartr"; version="0.1.0"; sha256="1b73bbysnxy3x3gwhm80xry45m18yh716wrc93v1awk3c1p2cv3m"; depends=[]; }; asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; }; ascotraceR = derive2 { name="ascotraceR"; version="0.0.1"; sha256="0h7q49pdchw0apyrm813qrl4sp6hym31awh1bjlk06fd76ynj72y"; depends=[circular data_table lubridate lutz purrr sf terra]; }; @@ -5992,7 +6017,7 @@ in with self; { aspect = derive2 { name="aspect"; version="1.0-6"; sha256="13pb1pslyka706v13b7hdrzzn5bxmj2l5irpd9f1pm1n8a1ivrrl"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; aspline = derive2 { name="aspline"; version="0.2.0"; sha256="1a68x6jvsaxviy2w361f19iqzsdsaf9kcqw5cknf4yz9fvkqhjny"; depends=[dplyr ggplot2 magrittr mgcv Rcpp rlang splines2 tidyr]; }; - asremlPlus = derive2 { name="asremlPlus"; version="4.3.36"; sha256="0hbg7asd7z0112jarprxkanqh3f2rlrbm6hkayv0spyn4z6hpqgl"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape2 sticky stringr]; }; + asremlPlus = derive2 { name="asremlPlus"; version="4.3.40"; sha256="03w16mlri6mb4zigb9fj8rfz10kwwwdkqf4l9x8az5z52aq7b7zc"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape2 sticky stringr]; }; r_assert = derive2 { name="assert"; version="1.0.1"; sha256="0n5l48yb0djl6rdj50p1dslpw3c5kbi15yz6z6rdgic575gjwzdc"; depends=[]; }; assertable = derive2 { name="assertable"; version="0.2.8"; sha256="1cciil1nzxd8gbj49w99jiv077lbpb59vx7bmb4p218aj2h5hqq4"; depends=[data_table]; }; assertive = derive2 { name="assertive"; version="0.3-6"; sha256="02palil82idqhhshcdjsfsja9qkqnd0dczqzj5gbccy4hfg1c0y4"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; @@ -6011,7 +6036,7 @@ in with self; { assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; - assertr = derive2 { name="assertr"; version="2.8"; sha256="00764vv86r3bn4r85in4w637harffyw605fgq0dj6mrbrwcfb650"; depends=[dplyr MASS rlang]; }; + assertr = derive2 { name="assertr"; version="3.0.0"; sha256="1wi3mz968clvwqg6mbm32zhj4vyfskklk72b4028cjsfdry6bpfp"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assignR = derive2 { name="assignR"; version="2.2.1"; sha256="1v9vc5klyk713xp1xhcndfq0qprh0553a6wr9yb6c5p5r7mwgrlh"; depends=[geosphere maptools mvnfast raster rgdal rlang sp]; }; @@ -6039,7 +6064,7 @@ in with self; { atime = derive2 { name="atime"; version="2022.9.16"; sha256="07zmnbsglaaczn0sdzqz8749hsv578lr5w8qvjwl83sqpqmfs81y"; depends=[bench data_table git2r lattice]; }; atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; - atom4R = derive2 { name="atom4R"; version="0.3-1"; sha256="0a3q76rl2gr2yvsbq5czbglvrwvkndbw6sskbrf86gmdksyb3ssc"; depends=[httr jsonlite keyring R6 rdflib readr XML zip]; }; + atom4R = derive2 { name="atom4R"; version="0.3-3"; sha256="08n9apmliwri1vyqwfvyqi7m8b9nj7zpi1vg8gcqlg17skxndm2m"; depends=[httr jsonlite keyring R6 rdflib readr XML zip]; }; atpolR = derive2 { name="atpolR"; version="0.1.1"; sha256="1mi2xghd5vxy6qx621dihx70wk3w1nqvm2h3j2drrb84b8zbvcvh"; depends=[Rdpack sf stringr terra]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attachment = derive2 { name="attachment"; version="0.3.0"; sha256="0rw1dqglnfwhql8342h15xq9qbvcsxd5cvipjvlz827ri428r8r0"; depends=[cli desc glue knitr magrittr rmarkdown roxygen2 stringr withr]; }; @@ -6076,16 +6101,16 @@ in with self; { autocogs = derive2 { name="autocogs"; version="0.1.4"; sha256="0v27l9a0ysj7x9wjka1jl1bq9rmxmzldclcp1w59a6807wjlszhx"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; autoharp = derive2 { name="autoharp"; version="0.0.10"; sha256="0jn7nya4lb1pvdy7yyimxga4gn042jqwl3w82m6c244kqydm5fi0"; depends=[dplyr igraph knitr lintr magrittr pryr rlang rmarkdown shiny stringr tibble tidyr]; }; - autohrf = derive2 { name="autohrf"; version="1.0.4"; sha256="1fg3zxq39fiwj8jgxjzp71df7dkxy4srn2z3lfabacvlxg4q3r5k"; depends=[cowplot doParallel dplyr foreach ggplot2 gtools lubridate magrittr RColorBrewer]; }; + autohrf = derive2 { name="autohrf"; version="1.1.0"; sha256="1zmnrfak91q10aa9a3i816hln2skvbnamigcbsc1dbkj0j6mdqwd"; depends=[cowplot doParallel dplyr foreach ggplot2 gtools lubridate magrittr RColorBrewer]; }; autoimage = derive2 { name="autoimage"; version="2.2.3"; sha256="1jhkd7mbig6wpyc69iynfrj5i62lrwcwqbgjkmq8b9p5raglm1g2"; depends=[colorspace fields ggplot2 mapproj maps MBA]; }; autokeras = derive2 { name="autokeras"; version="1.0.12"; sha256="0wyqz40fc277z1q1zxdmmjzksnmlh58r27a6hx08h6hmzvng5avy"; depends=[keras reticulate]; }; automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-16"; sha256="0jz0p28gmx9cpzv4cz0xhbml3w1inf2nsd2ynbhmfxg5rm2f7dca"; depends=[ggplot2 gstat lattice maptools reshape sp]; }; automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; - autonewsmd = derive2 { name="autonewsmd"; version="0.0.3"; sha256="0r642l1ifkj9dnzi7jbxfx9l40sm4yyjrbzb9v9w5dlmswlbay3b"; depends=[data_table git2r magrittr R6 rmarkdown]; }; + autonewsmd = derive2 { name="autonewsmd"; version="0.0.4"; sha256="0bpwg9gr55c9fyj9xhm8hr2zhw2skghqahdw4k2l402kx8aciq1p"; depends=[data_table git2r magrittr R6 rmarkdown]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; - autostats = derive2 { name="autostats"; version="0.3.1"; sha256="1yn1p7zkswx0jswvfnizh5lzzwihn2wlwjw7bcv55zjpm9r3mhi8"; depends=[agtboost broom data_table dials doParallel dplyr flextable FOCI forcats framecleaner ggeasy ggplot2 ggthemes gtools janitor jtools lubridate magrittr nnet parsnip party patchwork presenter purrr readr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost XICOR yardstick]; }; + autostats = derive2 { name="autostats"; version="0.4.0"; sha256="0xyfv2akv308g3r0wq2dcg7l24p6bf3524x1ikj1lfmw07hca6k6"; depends=[broom data_table dials dplyr framecleaner ggeasy ggplot2 ggthemes gtools janitor jtools magrittr nnet parsnip party patchwork presenter purrr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; autostsm = derive2 { name="autostsm"; version="3.0.3"; sha256="1d80l7lxzrpwdd92cc41ykj2ylkdhndamqphprw9a3wf0zn7l39d"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra kalmanfilter lmtest lubridate maxLik progress sandwich strucchange]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.4.0"; sha256="1n8kfl7zk7smwmkj1rlp4j4i0jnwi2f0aw58jhlf7ivahrq0rmnk"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; av = derive2 { name="av"; version="0.8.2"; sha256="08h99iy05s1r9ix1i0mbzpz14hhvk0ima9165hhlxkl7w6qqld9j"; depends=[]; }; @@ -6097,6 +6122,7 @@ in with self; { avocado = derive2 { name="avocado"; version="0.1.0"; sha256="0qy9ripwydm3f70rpxwk0asc7r25hg8jcbrr4rz8bxs93q1lsz8x"; depends=[]; }; aweSOM = derive2 { name="aweSOM"; version="1.3"; sha256="0nfbn7rgazvc5nljf8i7bwpxy5j0w404bnrvi02k97jvmrra1dyb"; depends=[bslib cluster data_table DT e1071 fields foreign ggplot2 haven htmltools htmlwidgets kernlab kohonen rclipboard RColorBrewer readODS readxl rmarkdown shiny viridis]; }; aweek = derive2 { name="aweek"; version="1.0.3"; sha256="14n1xmargr89mf4n0bdzdwn7qh314a1xg1bid5px762vk0qf4fws"; depends=[]; }; + awinR = derive2 { name="awinR"; version="0.1.0"; sha256="09cp9wfb4aslfddlk72n0kawfghyn1fcjya5afjhiffwww5ps3iy"; depends=[jsonlite]; }; aws = derive2 { name="aws"; version="2.5-1"; sha256="1fhm87iax6bkvd4vszvjbcqw3b2drs11rjxr7zf2w4sgc72svaz8"; depends=[awsMethods gsl]; }; aws_alexa = derive2 { name="aws.alexa"; version="0.1.8"; sha256="0m1i1xgi9fqixq90ai2ag0079aa75nlyhbr3ln3yhk5g8zx9i9m9"; depends=[aws_signature dplyr httr xml2]; }; aws_comprehend = derive2 { name="aws.comprehend"; version="0.2.1"; sha256="0qn4mkdd17c8kmrm4ml7l1x3rzaw3gbykhrj3m0ga53crcqdhqri"; depends=[aws_signature httr jsonlite]; }; @@ -6113,7 +6139,6 @@ in with self; { awsMethods = derive2 { name="awsMethods"; version="1.1-1"; sha256="0hbmrcpdyg15zg4rysscsmxpxlpy0dkxx2aa63qibq7l1k14v4sh"; depends=[]; }; aziztest = derive2 { name="aziztest"; version="0.2.1"; sha256="0rpnyrb7zi42l1fc8ni0r5d0y6a4dr56917z8i54mv1jrk4hijjd"; depends=[]; }; azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; - bRacatus = derive2 { name="bRacatus"; version="1.0.9"; sha256="0rwa452izd453nllirdvngcrf1inpc7njfhdlpwjvgsx9k3ri908"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="2.1"; sha256="0sqr0ylap610bw5v52hr8z3kl7c09rfs3l12zgc56cl04i0dab85"; depends=[Matrix Rcpp RcppEigen]; }; @@ -6135,7 +6160,7 @@ in with self; { backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; - badger = derive2 { name="badger"; version="0.2.1"; sha256="0ni3ns235n1haxrldk7s3zbgsg8q245jhki9b3r10yxlp94c2djs"; depends=[desc dlstats rvcheck usethis]; }; + badger = derive2 { name="badger"; version="0.2.2"; sha256="1y2yfd31nb16g0zwhwaqwb2k3v9f5yr5fvgd0y458v4066svhk70"; depends=[desc dlstats rvcheck usethis]; }; baffle = derive2 { name="baffle"; version="0.2.1"; sha256="09yfxxq252sbfx0yh6m0zkjvwdwgsj6ycr4n8llkqpf8qjspk22a"; depends=[]; }; bagged_outliertrees = derive2 { name="bagged.outliertrees"; version="1.0.0"; sha256="0fcd54j6vci2yvlb609dck4pwbn54irkdk472cjc965rcw6dz9z7"; depends=[data_table doSNOW dplyr foreach outliertree rlist]; }; baggr = derive2 { name="baggr"; version="0.6.21"; sha256="08f6wn1r3rxdlvchgxkrwpl08qlqqj6arvw4kkncvnb94g83cy4y"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; @@ -6148,7 +6173,7 @@ in with self; { bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; bambooHR = derive2 { name="bambooHR"; version="0.1.0"; sha256="1m9kzr698lgcilmr5w5zs6q9rgpcdvqiavrhh6c4ar6ii07n274s"; depends=[cli curl dplyr fs glue httr janitor jsonlite lubridate magrittr purrr rlang stringr testthat tibble tidyr withr]; }; bamdit = derive2 { name="bamdit"; version="3.4.0"; sha256="0x7dl2f8qg8df07g4k692501rqn3q5zf12npx9zbbbvv7zb23rlf"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.1-8"; sha256="1338g401rvpi5ch7z50hm5zp375zpqvwv6b3szn4llf7pfr316fr"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; + bamlss = derive2 { name="bamlss"; version="1.1-9"; sha256="1zlcgjd08adr5c8jk16aw98lp5bsr1c03f29lhr4nzxjyppfn98c"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; bamp = derive2 { name="bamp"; version="2.1.3"; sha256="0qzcndjdwbgiwyvc7ikb7jr0n7cmn78v56h5in22j24jjj740l2z"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.1"; sha256="0zj98x4kwv8fr6j78vg0hzlsjd4w5l4nbazkpxqkn5yyd6g0v9h4"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; @@ -6196,7 +6221,7 @@ in with self; { bate = derive2 { name="bate"; version="0.1.0"; sha256="1jrf614g5699ygw73pda7dk79ydx57sc8wpq4vg51yy98arhidc2"; depends=[concaveman dplyr ggplot2 latex2exp magrittr purrr tidyselect vtable]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; - bayMDS = derive2 { name="bayMDS"; version="1.6"; sha256="1g4haskms28rn5wpkqn7rgaqpx5n4x3rz48n292l1vknb4mjwm8n"; depends=[ggplot2 ggpubr gridExtra progress Rcpp RcppArmadillo rgl shiny shinythemes]; }; + bayMDS = derive2 { name="bayMDS"; version="2.0"; sha256="1l5srpaichn598a3a9pj7pwp35jvbwb65d37l9ngvdq3rja8xm0s"; depends=[ggplot2 ggpubr progress Rcpp RcppArmadillo shiny shinythemes]; }; baycn = derive2 { name="baycn"; version="1.2.0"; sha256="1ykz1brs3mz94n86d5qaq25vf24j5adyzpddxqmn7qklbxxr6fh5"; depends=[egg ggplot2 gtools igraph MASS]; }; bayefdr = derive2 { name="bayefdr"; version="0.2.1"; sha256="178s559p1mgzp2b23plq3dcl5p0mg1d5cy6477knbaq711awzz3j"; depends=[assertthat cowplot ggExtra ggplot2 reshape2]; }; bayes4psy = derive2 { name="bayes4psy"; version="1.2.8"; sha256="0fmp88mrnmx4langd014l6jf06zmvwhclw4k0aw88v996hzv76bx"; depends=[BH circular cowplot dplyr emg ggplot2 mcmcse metRology Rcpp RcppEigen reshape rstan rstantools scales StanHeaders]; }; @@ -6208,11 +6233,12 @@ in with self; { bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="5.0-3"; sha256="1dlaqp6qd6qi8p8ni3z7adjrsn44njzvngyga4a97crp3jfqpx7k"; depends=[bayesTFR car coda data_table hett wpp2019]; }; + bayesMRM = derive2 { name="bayesMRM"; version="2.3.0"; sha256="1am9valflwzs71vbfsz4glfzb4wnqsn4baryjk8srwkg37p5v2mm"; depends=[coda ggplot2 gridExtra rgl rjags shiny shinythemes]; }; bayesPO = derive2 { name="bayesPO"; version="0.3.1"; sha256="1n9m89lhdj0ng3570x23kcjyjv85bky0hqrs1sl7qxjdzxacsisl"; depends=[coda Rcpp RcppEigen RcppProgress]; }; bayesPop = derive2 { name="bayesPop"; version="9.0-1"; sha256="15lisc0wvijmdjgw7n5fadbz4g702v9rp748h5xp5r6qk32g3njx"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; - bayesSurv = derive2 { name="bayesSurv"; version="3.5"; sha256="0bk3yd7myycfbmfrw9nbsdzqf1qzmzdckgi951fdqllj3m037gyx"; depends=[coda smoothSurv survival]; }; - bayesTFR = derive2 { name="bayesTFR"; version="7.2-0"; sha256="0iax6z6c6vxgq5v1n357i8grdrbymgc7dv091bhdgrd7352cpqxc"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; + bayesSurv = derive2 { name="bayesSurv"; version="3.6"; sha256="1y1jqd1c2rg4s73ffyq8wjkpq35321nzywigcgh6vkjpd8r8xhpx"; depends=[coda smoothSurv survival]; }; + bayesTFR = derive2 { name="bayesTFR"; version="7.2-2"; sha256="1z816jdva0z103bibx1c8f5yn5zbfxr4cfwh1wn29p6f1j6madcc"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; bayesZIB = derive2 { name="bayesZIB"; version="0.0.4"; sha256="02n76vw38xd1p6j2r505mkbfvnwij7i5lx8x6w9hrsnh9q0dy6dw"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; @@ -6231,13 +6257,13 @@ in with self; { bayeslm = derive2 { name="bayeslm"; version="1.0.1"; sha256="0mnzxzdz456qxfszl8vhnvb1875hxn8b57wi6dhr9g668da2zdin"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; - bayesm = derive2 { name="bayesm"; version="3.1-4"; sha256="154glks7rsjkza0sfi1kj7wj727py9sl1ba6sswflwmwc9n226q6"; depends=[Rcpp RcppArmadillo]; }; + bayesm = derive2 { name="bayesm"; version="3.1-5"; sha256="18j7h32nq4hx1qnxfgfgz3q39q35lmvsq3im90xjkphyli60f8zj"; depends=[Rcpp RcppArmadillo]; }; bayesmeta = derive2 { name="bayesmeta"; version="3.2"; sha256="12lgbbvg6ywpr42ig8rfbki1fv9j294jr1nsq0gpr2khj4nw6npi"; depends=[forestplot metafor mvtnorm numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; - bayesnec = derive2 { name="bayesnec"; version="2.0.2.4"; sha256="1jiyx9kmlabximslmp8m0f35qc7ngh59jxkf4im3qmqfn36b6q3m"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; + bayesnec = derive2 { name="bayesnec"; version="2.0.2.5"; sha256="0mfmpbfwysk298lc81g9yp29jj3ayral3p9fd8vf0vby3jkmppbc"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; - bayesplot = derive2 { name="bayesplot"; version="1.9.0"; sha256="0hqy597ang53phxnl084hak35ffqz9lw9hygax7370gpkjws908a"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; + bayesplot = derive2 { name="bayesplot"; version="1.10.0"; sha256="1zqka7lg7a6ccli1yzhk1n13vbrlp8m0kjxmykjqmkz438mvjk5v"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; bayesreg = derive2 { name="bayesreg"; version="1.2"; sha256="0yrx7y39xxmm0z4myj6ma24dkkhgcily5baxr6yf9balgvhd5wf4"; depends=[pgdraw]; }; bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; bayess = derive2 { name="bayess"; version="1.5"; sha256="1dhkyz3dz04rghl5fpjdz1n5d6v053km25hkq0ssdcvrbsms62c8"; depends=[combinat gplots mnormt]; }; @@ -6253,7 +6279,7 @@ in with self; { bbknnR = derive2 { name="bbknnR"; version="1.0.2"; sha256="018szrk8xskvill181jc3xji9gapn4z6ps1rfh7fgga9334726vs"; depends=[dplyr glmnet Matrix Rcpp RcppAnnoy reticulate Rtsne Seurat SeuratObject tidytable uwot]; }; bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; bbmle = derive2 { name="bbmle"; version="1.0.25"; sha256="0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; - bbotk = derive2 { name="bbotk"; version="0.6.0"; sha256="0ingnvfps46bysi8k2rqnvlh577bzk6fih6hcf20mjspdxx1as3v"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; + bbotk = derive2 { name="bbotk"; version="0.7.2"; sha256="1gw0rkbiv93ifl9110r9sr0p9g4vg7qc11mznmmjq0a5vzmqgpm9"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; bbsBayes = derive2 { name="bbsBayes"; version="2.5.2"; sha256="0wczfhck5gvmpv7z4d5db3qmdincw8q5hhchn2y47mzvpwfvwzwg"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI mgcv progress rappdirs sbtools sf stringr]; }; @@ -6265,7 +6291,7 @@ in with self; { bccp = derive2 { name="bccp"; version="0.5.0"; sha256="0g9yzqzf977rx97c77krdhl7c499r58xcbzx0nihk73143ynf17w"; depends=[pracma]; }; bcdata = derive2 { name="bcdata"; version="0.3.2"; sha256="0wmhk80r0d5k5f97r379g743a8r49jv7lj3i7fjaxb21az063ga6"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; bcf = derive2 { name="bcf"; version="1.3.1"; sha256="04vjvzh8y1dfk6ms5zwbylbfalwngvyjbjcszx26v2fakdk990p7"; depends=[Rcpp RcppArmadillo]; }; - bcfrailph = derive2 { name="bcfrailph"; version="0.1.0"; sha256="0l5v3bc8xw71cj012sbmq1f0glg7m545jzqyg01gzl8kbgm3lbbj"; depends=[survival]; }; + bcfrailph = derive2 { name="bcfrailph"; version="0.1.1"; sha256="0qq885wfd7sr8cjxygw33l321q7jk4b6996p0j6inzlwycs8d6bc"; depends=[survival]; }; bcfrailphdv = derive2 { name="bcfrailphdv"; version="0.1.0"; sha256="06xzz5m4s5fp36j3saxmpw1p0bhh42cjd35cadwkk3vg836kj1na"; depends=[bcfrailph survival]; }; bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; }; bcmaps = derive2 { name="bcmaps"; version="1.0.3"; sha256="1qr7jkybrg80pb0hhqmcpp66gkk5w74cjgyg7mnm9czz1j47wsl4"; depends=[bcdata httr jsonlite progress rappdirs sf xml2]; }; @@ -6283,7 +6309,7 @@ in with self; { bde = derive2 { name="bde"; version="1.0.1.1"; sha256="0idawsykqz7ybnnfcs0946wd1q8aaw1xdx2w3zzgjz7faxbvznb9"; depends=[ggplot2 shiny]; }; bdl = derive2 { name="bdl"; version="1.0.4"; sha256="01z6kv2wv67byyw49smri8zvi6mhwr5i8li4yhk96rrdjf4xwpxp"; depends=[dplyr ggplot2 ggpubr httr jsonlite magrittr progress purrr randomcoloR sf tibble tidyr tmap tmaptools]; }; bdlp = derive2 { name="bdlp"; version="0.9-2"; sha256="14fxwgcn3g6k1cdimgfp6zmsgqi4s7sh6kapnls229qiin2nijjl"; depends=[DBI GenOrd MASS MultiOrd rgl RSQLite stringdist]; }; - bdots = derive2 { name="bdots"; version="1.1.0"; sha256="02lgpgkhzyq9qaf18mzq2708ps00lsxm69apfsaq5m34zxkynq5z"; depends=[data_table ggplot2 gridExtra mvtnorm nlme]; }; + bdots = derive2 { name="bdots"; version="1.2.0"; sha256="0k1865vkg0s6jhw2k3w7gqw9v94rchfwpsbaf1cxbg0rpy1f0c0b"; depends=[data_table ggplot2 gridExtra mvtnorm nlme]; }; bdpar = derive2 { name="bdpar"; version="3.0.3"; sha256="17xrkizwdg1jz2glmmhlk153x75kylfv0pw7dn5x85m6sbah6zb1"; depends=[digest R6 rlist]; }; bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; }; bdpv = derive2 { name="bdpv"; version="1.3"; sha256="0wcnmamqrbqwskgv2yhnxq2kb179n63c825y9hsl20rfca0ijh6m"; depends=[]; }; @@ -6332,7 +6358,8 @@ in with self; { betaBayes = derive2 { name="betaBayes"; version="1.0.1"; sha256="1a7ng6ym47scgj47frrhs76r6ipq6mhgf3ivbg2npqpg7hjcz2ci"; depends=[betareg Rcpp RcppArmadillo]; }; betaSandwich = derive2 { name="betaSandwich"; version="1.0.2"; sha256="035rkz27c156kwaibz0jrhfrdfvxv20fcynqgflxll62n4zhw010"; depends=[]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; - betafunctions = derive2 { name="betafunctions"; version="1.8.0"; sha256="0naydz3l37pd1jciachi5ra3pv07fhjpfhbfqvf3qgqvnmvanbwl"; depends=[]; }; + betaclust = derive2 { name="betaclust"; version="1.0.0"; sha256="1h3fcvs22spxhphcfg7zl75cpa5yycyl2yy0bgyy0hwkwh8cwpza"; depends=[doParallel foreach ggplot2 plotly scales]; }; + betafunctions = derive2 { name="betafunctions"; version="1.8.1"; sha256="0xvg5d04icsb0v9f7gnvpw345sik8xla5p55cdpbm8c3wwfk1d1m"; depends=[]; }; betapart = derive2 { name="betapart"; version="1.5.6"; sha256="08rphgdqxgkih70kqnn7x1hkahl309pa363zbqsdwk0lmfq2azkh"; depends=[ape doSNOW fastmatch foreach geometry itertools picante rcdd snow]; }; betaper = derive2 { name="betaper"; version="1.1-2"; sha256="0gh5xjimg0wgv626g3y34mvgrji2aylnm89iwadg7d6g4s457ynp"; depends=[vegan]; }; betareg = derive2 { name="betareg"; version="3.1-4"; sha256="00c1l5ah74vf7ljpja4iwyf9cwcvb1c835hmc98jp2x6jrh9h1ji"; depends=[flexmix Formula lmtest modeltools sandwich]; }; @@ -6343,7 +6370,7 @@ in with self; { beyondWhittle = derive2 { name="beyondWhittle"; version="1.1.3"; sha256="0hx1j6vgq25qk966wkc8pq0y6whxqnp1nglm3d4majqp55iqi1lx"; depends=[BH forecast ltsa MASS Rcpp RcppArmadillo]; }; bezier = derive2 { name="bezier"; version="1.1.2"; sha256="1vw5128v8h973xwa1fdm9cw2jvrldj87nd55lddlp3qsz3ag4br6"; depends=[]; }; bfast = derive2 { name="bfast"; version="1.6.1"; sha256="1vjklk7d9b0q7j348aqvspm7rn80bh06hz66r2z1qs9436ppkx5a"; depends=[forecast Rcpp Rdpack strucchangeRcpp zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-45"; sha256="1vgzf3nxavnydbfcg539xb0kr220yqd053697yhq84j0g2an10xg"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-46"; sha256="129pnd3hkaan26dxjs9qp49yhbq9r7mhmp780x6yzcdn74xzwfnw"; depends=[Rcpp]; }; bfsMaps = derive2 { name="bfsMaps"; version="0.9.8"; sha256="00lp22bmhww7f95bpy4di4fk3r5gnscqcvb9ha7d4gygqy0dzskv"; depends=[DescTools maptools rgdal rgeos rlang sp spdep]; }; bfsl = derive2 { name="bfsl"; version="0.2.0"; sha256="10z3w1fk4va2ajvpnqp0llgw4a047iaya6xi57if1a7jd7r1jxfh"; depends=[generics]; }; bfw = derive2 { name="bfw"; version="0.4.2"; sha256="0qgq47axa0r9653d1sjm00fvfx49v28id5sngwyrgkppcngmbg9p"; depends=[circlize coda data_table dplyr ggplot2 magrittr MASS officer plyr png runjags rvg scales]; }; @@ -6359,7 +6386,7 @@ in with self; { bhpm = derive2 { name="bhpm"; version="1.7"; sha256="0fhk2gmghibf7la864dzm19bm76525gzbj03vw0y0zwbv9shbpcp"; depends=[coda]; }; biClassify = derive2 { name="biClassify"; version="1.3"; sha256="14z3kmpmlvnkjwpjspajdfx5951cmck4binszzdd7nqbai5f1dwv"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; - biblio = derive2 { name="biblio"; version="0.0.6"; sha256="079p0qzmi3sg2ff7ln9lg65lf7r402rldqfpxmfvckhm9s6b29b4"; depends=[stringr yamlme]; }; + biblio = derive2 { name="biblio"; version="0.0.7"; sha256="1mknfrkpapa88hlnzssv4k79xx9lg0ab34v88yhbnkm1xmmwrwq8"; depends=[stringr yamlme]; }; bibliometrix = derive2 { name="bibliometrix"; version="4.0.1"; sha256="00c0dfnv989sf206qsh6gk2s0h73xqq0vd2a9sr2zh5rxf9x9c24"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.3.0"; sha256="0dkg5g9il95w9glzvhjdgp8z30prydspvpz5bb403vaizykwv9kl"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; @@ -6391,13 +6418,13 @@ in with self; { bigmatch = derive2 { name="bigmatch"; version="0.6.4"; sha256="1a3qiljarnv14dmpr5g2nfxzaf4wmw88md4kjrlrlgxcgmijlwm6"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmds = derive2 { name="bigmds"; version="2.0.1"; sha256="05sph85z4c4fiwd429hx9chgd7rsn48irr168yy1dj9daaqm49pl"; depends=[]; }; bigmemory = derive2 { name="bigmemory"; version="4.6.1"; sha256="0hainqkm7cs8gjm42vkpdrr0284smsbwdfackp34yv7dhxy1avmm"; depends=[BH bigmemory_sri Rcpp uuid]; }; - bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; + bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.6"; sha256="03468ak0lgd9m0f7synxms2zzr8f7n2nm1gmhcraj3nfcv4nmyiv"; depends=[]; }; bignum = derive2 { name="bignum"; version="0.3.0"; sha256="0r7vmix40646vdiw9mzzbz5ihrr08rldnpvy8l9ilp73cn9189mj"; depends=[BH cpp11 rlang vctrs]; }; bigparallelr = derive2 { name="bigparallelr"; version="0.3.2"; sha256="14rkcig4j93c231sfm43331ykmvxjx2fiz5nhblj2rfzkxli4css"; depends=[bigassertr doParallel flock foreach parallelly RhpcBLASctl]; }; - bigreadr = derive2 { name="bigreadr"; version="0.2.4"; sha256="0650mbgbzl2582d02ma3kd8iqdimjajk9gnx70hdjl489q15w80f"; depends=[bigassertr data_table parallelly Rcpp]; }; + bigreadr = derive2 { name="bigreadr"; version="0.2.5"; sha256="15wy5rphk2l59k8fk68a15xsvy8nxj1srnc2c86i7y5ym04a856k"; depends=[bigassertr data_table parallelly Rcpp]; }; bigrquery = derive2 { name="bigrquery"; version="1.4.1"; sha256="1rcz1zq0azrrchhxz4b0g4m9c3ymp4pasi7ji1nvx25w5x41sdmv"; depends=[assertthat bit64 brio curl DBI gargle glue httr jsonlite lifecycle prettyunits progress rapidjsonr Rcpp rlang tibble]; }; bigsimr = derive2 { name="bigsimr"; version="0.11.2"; sha256="1mygsc865hki6z2bilvbnymk8r4p73ams7iah9qpqi0ap6cqqz8p"; depends=[JuliaCall]; }; - bigsnpr = derive2 { name="bigsnpr"; version="1.11.4"; sha256="0jvvwrpbf74w999ifm721ckhp42ywffbx3ij6xqg1v9gvzpgni4c"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table doRNG foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio roptim runonce vctrs]; }; + bigsnpr = derive2 { name="bigsnpr"; version="1.11.6"; sha256="0d7ysy4zwv4fkivn05lfi1bwdix6ms1b0h9n4nl3qbyangfcz52a"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table doRNG foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio roptim runonce vctrs]; }; bigsparser = derive2 { name="bigsparser"; version="0.6.1"; sha256="0b6hh1rvi7qnz9kfnckjglcv240inpnc5f50cyrpfq5gdyppzhy1"; depends=[bigassertr Matrix Rcpp RcppEigen rmio]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.5.12"; sha256="1wj169j91yjlb12dzy80q7rvi102l7fhlzfvc93rxifq2w3px9x8"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp RcppArmadillo rmio RSpectra tibble]; }; @@ -6439,7 +6466,7 @@ in with self; { binsegRcpp = derive2 { name="binsegRcpp"; version="2022.7.21"; sha256="15qiqzwy64xz6pbwy8mvw6xnmz52bjqbc0p6l5gsfkh6g489xjb0"; depends=[data_table Rcpp]; }; binseqtest = derive2 { name="binseqtest"; version="1.0.3"; sha256="0661a2bqmv6bckq23c6m04ggwrp8z10lfgjg9dgkz4bfxsd297gs"; depends=[clinfun]; }; binsmooth = derive2 { name="binsmooth"; version="0.2.2"; sha256="1sidv8ra377glaacib1j4ksg5bg759hk7h6fadrfzip3hgxgjg9x"; depends=[ineq pracma triangle]; }; - binspp = derive2 { name="binspp"; version="0.1.24"; sha256="0k4ljmw5snjvyad8vgx370q91v7yj39c479q9jzld1brh2gpasr9"; depends=[cluster mvtnorm Rcpp RcppArmadillo RcppEigen spatstat spatstat_core spatstat_geom spatstat_random VGAM]; }; + binspp = derive2 { name="binspp"; version="0.1.26"; sha256="0ah002lvimniwmwgn2syw9saxgzpdhs5vins0f3kb98p5k3gdxqk"; depends=[cluster mvtnorm Rcpp RcppArmadillo RcppEigen spatstat spatstat_geom spatstat_model spatstat_random VGAM]; }; binsreg = derive2 { name="binsreg"; version="0.7"; sha256="1qxf5096vzf2j9d7yya0pr1hgxgkxm5llvz5ddyf0hqp22cjcsf7"; depends=[ggplot2 matrixStats quantreg sandwich]; }; binst = derive2 { name="binst"; version="0.2.1"; sha256="09kzk7n1j9nzgyijwirzk33z6p6hc67zkd05hv1i9qfijy31gci4"; depends=[rpart]; }; bio_infer = derive2 { name="bio.infer"; version="1.3-6"; sha256="1hs11c9qpdsl1awgk3b34mcsnr8g1xpg3zd9dlrqrz6ppdqkgxmn"; depends=[]; }; @@ -6452,18 +6479,18 @@ in with self; { bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; bioclim = derive2 { name="bioclim"; version="0.3.0"; sha256="1qiz7bwy44xlgj52cy46bg762fg3llgzzn9a2bclyx42v12z8p6q"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; biocompute = derive2 { name="biocompute"; version="1.1.1"; sha256="102n8y83z8568lwil2fb28wrjkymwmw9rzvk0a4zgsx5a3l7wl01"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; - biodosetools = derive2 { name="biodosetools"; version="3.6.0"; sha256="06i6vg0n98x91j8mkh0mbh4m7a34ghr22x6msrhdig0xh522ia5z"; depends=[bsplus cli config dplyr ggplot2 golem htmltools magrittr MASS maxLik mixtools msm pkgload rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; + biodosetools = derive2 { name="biodosetools"; version="3.6.1"; sha256="013nqdqrv5h3swzqss2kazsp06wrs57zri3aaidy92wrd6v24bsh"; depends=[bsplus cli config dplyr ggplot2 golem magrittr MASS maxLik mixtools msm rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogeom = derive2 { name="biogeom"; version="1.2.1"; sha256="1hwb99b0yrm6a11jkas0fikcbamzi41a4j5j9qnp474bkj9a5jd2"; depends=[spatstat_geom]; }; biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; - biogrowth = derive2 { name="biogrowth"; version="1.0.0-3"; sha256="0hyx6j1lj1igm0c2pgjbx3gk77q8x2jlcpslky7p9fplc92baig6"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; + biogrowth = derive2 { name="biogrowth"; version="1.0.1"; sha256="0hlpnx86bfk16mw5yhrwlf8qz9f52wx88n5iy3lw6qhq65a6ja2f"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.8"; sha256="1b7nxjis0p1hiv3w0cr3cyc2xz6sn9qbpssvlp2d7c5gm8x2gnj7"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; }; biolink = derive2 { name="biolink"; version="0.1.7"; sha256="1i9aisvb3lvljird89fy9fx7h3s1wi6dpilycbynqyhz8xqnnszj"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; biomartr = derive2 { name="biomartr"; version="1.0.2"; sha256="0hr7wks88lbfcqzjzm4x265dk4lpmc3i2ndp7xcrx8ssj76wrmkz"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; - biometryassist = derive2 { name="biometryassist"; version="1.1.1"; sha256="0r96qkhs05czdvx89ndx3z4yz35va3653waql8ygfhn65r9gzis9"; depends=[agricolae cowplot curl farver ggplot2 lattice multcompView pracma predictmeans rlang scales stringi withr]; }; + biometryassist = derive2 { name="biometryassist"; version="1.1.2"; sha256="176j3qvvhg9qj87zqzxyc95npjwrv346lsa8f0plgp0llk9ka8vj"; depends=[agricolae cowplot curl farver ggplot2 lattice multcompView pracma predictmeans rlang scales stringi withr]; }; biomod2 = derive2 { name="biomod2"; version="4.1-2"; sha256="1vwcbikpd8x7i9jy6g20wdwxpf0d6n2sbj6npbadj75mxmda0r6c"; depends=[abind data_table dplyr earth foreach gbm ggplot2 MASS maxnet mda nnet PresenceAbsence pROC randomForest raster reshape reshape2 rpart sp]; }; bionetdata = derive2 { name="bionetdata"; version="1.1"; sha256="14ll1m85pcr0xycczk1y9jxiqxfy5daiigfhqn4f6sfk2afy07yr"; depends=[]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.3"; sha256="1k0r3fnkzfczx3wp3m8zpndk6gxca7idsp0z13rw84zjrgqaw6jm"; depends=[amap cluster e1071 rgl scales]; }; @@ -6471,7 +6498,7 @@ in with self; { bioseq = derive2 { name="bioseq"; version="0.1.4"; sha256="0m93s7vrpd392w2mcv3sdf5kcmpn1671ksplx1fiz7wdakck9fxq"; depends=[ape crayon dplyr pillar readr rlang stringdist stringi stringr tibble vctrs]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biospear = derive2 { name="biospear"; version="1.0.2"; sha256="10y4hbncwiqpxzqvzjrmfgp804zczdgvwpjcj0dzaa0sx1njdzja"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; - biostat3 = derive2 { name="biostat3"; version="0.1.6"; sha256="12i8ki1yair4sycfcwrhl10khfxzx5q2slzqjwcrqfxg69q8ak4l"; depends=[MASS muhaz survival]; }; + biostat3 = derive2 { name="biostat3"; version="0.1.8"; sha256="19qsg42nyisqfxl5y9ayd6hj82plnnqvryqkwdd6nfascn0zw44y"; depends=[MASS muhaz survival]; }; biosurvey = derive2 { name="biosurvey"; version="0.1.1"; sha256="1hhch5qagn86pcn43qlmv0azfbjc9yv58yp9v1p5s6r5ffxkgs95"; depends=[diptest doParallel foreach ks maps picante raster rgdal rgeos sp spatstat_geom vegan]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; @@ -6487,7 +6514,7 @@ in with self; { bisectr = derive2 { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; bisque = derive2 { name="bisque"; version="1.0.2"; sha256="0zp2r1vg29q2ds34hhyjv9pz761mi0qncx9p4ilwnfd5yj9pmzwq"; depends=[foreach itertools mvQuad Rcpp RcppArmadillo RcppEigen]; }; bistablehistory = derive2 { name="bistablehistory"; version="1.1.1"; sha256="0lk4kbxrnkr66cnyalzl2m18wwzf4y23r016nl1n52209vviql95"; depends=[BH boot dplyr future glue loo magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; - bit = derive2 { name="bit"; version="4.0.4"; sha256="0s7isadibxp2wr62r5cpbyh9z31sczzfz4j3rm7gxgjfpqgq8174"; depends=[]; }; + bit = derive2 { name="bit"; version="4.0.5"; sha256="1g5zakrzkhrqh3d7p1zka6zzzw11rdlbrvxsh05s7dkli1m57wph"; depends=[]; }; bit64 = derive2 { name="bit64"; version="4.0.5"; sha256="0y0m7q1rwam1g88cjx7zyi07mj5dipxd9jkl90f294syx8k6ipr5"; depends=[bit]; }; bite = derive2 { name="bite"; version="0.3"; sha256="00sph3pdbb9p21s3263ni4by2ivvya1sbjm9wvwx1rwjr4f31jps"; depends=[ape coda MASS phytools sm vioplot xml2]; }; bitmexr = derive2 { name="bitmexr"; version="0.3.2"; sha256="19nvrq75j2b2w6frz73rq3hx8bgwwrxjqfjgj10kdvc7gw8vx7mx"; depends=[attempt curl digest dplyr httr jsonlite lubridate magrittr progress purrr rlang stringr]; }; @@ -6500,7 +6527,7 @@ in with self; { biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0.1"; sha256="0gg381jhwdc0kc8v0yn7wcgjkpn8dfnnn20m5ycjv66jlk2jhdcw"; depends=[MASS robustbase]; }; bizdays = derive2 { name="bizdays"; version="1.0.12"; sha256="0645x590vzaa2a7srhjpg9s9g613z4yxbbrsnncflr2lmkky44xl"; depends=[jsonlite]; }; - bizicount = derive2 { name="bizicount"; version="1.2.0"; sha256="0bmp2x2wdqy0dsax375fl57m6w6xjapnn6rhkrvrmc8wj1cklvqw"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; + bizicount = derive2 { name="bizicount"; version="1.3.0"; sha256="10alimshxvbd755w655b0h1zwi2nakjinf4nlhiyz9mw2sclaars"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; bkmrhat = derive2 { name="bkmrhat"; version="1.1.3"; sha256="0l575dav5wyia37vm5j1dyljgk0k6l1hwfwsqr2gq3sb0iim4my4"; depends=[bkmr coda data_table future rstan]; }; @@ -6513,6 +6540,7 @@ in with self; { blavaan = derive2 { name="blavaan"; version="0.4-3"; sha256="0x0vx0gj0z1i1mczvi2j2g2zmdals7wz1ja0jcbpyzmb5arzgyd9"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; + blindrecalc = derive2 { name="blindrecalc"; version="1.0.0"; sha256="0ymcmakk8wwg72rcwj1nankw3bbdp29mr5vymaw04padwsrmbf20"; depends=[Rcpp]; }; blink = derive2 { name="blink"; version="1.1.0"; sha256="053nw592sglzh6fgz7hj8ra6q7lqs83hhv14kcgs67b56q8a3crb"; depends=[plyr stringdist]; }; bliss = derive2 { name="bliss"; version="1.0.4"; sha256="02kln40z10wngydn7y4x5shd2dff74gb340nhagf49k8ql9p78xw"; depends=[MASS Rcpp RcppArmadillo]; }; blm = derive2 { name="blm"; version="2022.0.0.1"; sha256="0pmh3fw5iv9xhr08gji1q5vcaaai5s2qq40wisqdrqn5xhk9rh2h"; depends=[]; }; @@ -6523,11 +6551,12 @@ in with self; { blockForest = derive2 { name="blockForest"; version="0.2.5"; sha256="11lfwh5skzbvyyh25hk0sxk21833ah9f8zybvqsn3m9109c9whsw"; depends=[Matrix Rcpp RcppEigen survival]; }; blocklength = derive2 { name="blocklength"; version="0.1.5"; sha256="06d62hgkf2pphr6h3nba1b5r0izr45bvmrymrzq0lyc7xiwrh6na"; depends=[tseries]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; - blockmodeling = derive2 { name="blockmodeling"; version="1.1.3"; sha256="19mxmxsnl6rrh85p0sak91vcaw4dz2cnm70hdzfwnvdrr695yw2z"; depends=[Matrix]; }; + blockmodeling = derive2 { name="blockmodeling"; version="1.1.4"; sha256="1f6jx8pwp3pnhs4wwxdrd1ska3h4w2423dpd11illxfajvnigkk9"; depends=[Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.5"; sha256="1h2g13yp8xhkw9icl5bi1nkc0qfqkqhlhdqbcsp0246g9amssci9"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="1.13"; sha256="1ag7hidz43zd3kdmm25v7x6w02v0lzw7l4hspwh4zrvigar3dbhc"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blocs = derive2 { name="blocs"; version="0.1.0"; sha256="18bajdr56d60fp1irgc3iyq758c1gwprvm3v9cvx9zvx9kdgnpa3"; depends=[collapse dplyr ggplot2 ks mgcv rlang tibble]; }; + blogdown = derive2 { name="blogdown"; version="1.15"; sha256="0299pf06ls16cyk5f3k73zwp2g094zgafdja9ibmwcpv64qmb1hs"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-2"; sha256="1lk7s7myxflr9as88944kvg8vn7m2ansg2caizr6h4d3690vr4m7"; depends=[boot mvtnorm openxlsx reshape2 rjags shiny]; }; blsR = derive2 { name="blsR"; version="0.4.0"; sha256="00xip7j9zkv62dkw2gcfiivaws0pri3jijcppb5xyz681k2jqdpz"; depends=[dplyr httr purrr readr rlang stringr]; }; @@ -6542,13 +6571,12 @@ in with self; { bmggum = derive2 { name="bmggum"; version="0.1.0"; sha256="1r0j5gklmknyan68nc3vfn96ck414v75547486ic70v2pdr3xnpf"; depends=[BH edstan ggplot2 GGUM loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; bmlm = derive2 { name="bmlm"; version="1.3.12"; sha256="0lzayz56knc1bj9r985kz91bfcjacs3zzz64b9dgbj0y2l7gd0xa"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - bmotif = derive2 { name="bmotif"; version="2.0.2"; sha256="1zy153z7kasfivj0mvrkyn96s0sgdp34w4pdjpcvfnym3lr02f0m"; depends=[gtools Rcpp reshape2 tensor]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; bmscstan = derive2 { name="bmscstan"; version="1.2.1.0"; sha256="05w6pz0mwqighhdl36f2ya1b4dw0xdhpfcbq6saw73ag5hvl57i9"; depends=[bayesplot ggplot2 LaplacesDemon logspline loo rstan]; }; bmstdr = derive2 { name="bmstdr"; version="0.3.0"; sha256="00msf9x6b1zg4y8xbyjz6yynvhl17krxlxgyy7ip9nnwsnkwlq6g"; depends=[BH CARBayes CARBayesST ggplot2 ggpubr inlabru MCMCpack mnormt Rcpp RcppEigen Rdpack rstan spBayes spTDyn spTimer StanHeaders]; }; bnClustOmics = derive2 { name="bnClustOmics"; version="1.1.1"; sha256="1pmg0q5jay8wkn24yv3j7xrdd8k6y8yjq6crjxg22yzfbbb0ws8g"; depends=[BiDAG clue graph gRbase mclust plotrix RBGL RColorBrewer]; }; - bnclassify = derive2 { name="bnclassify"; version="0.4.6"; sha256="00akv7mg4mn7kk98r6ja3yx9h822b8hnv1k890i8kwsra3c2qgid"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; + bnclassify = derive2 { name="bnclassify"; version="0.4.7"; sha256="010447r21i5r2nk843v8dmfncqgmp4yf71ahcrppqv8vxfywcg6i"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; bnlearn = derive2 { name="bnlearn"; version="4.8.1"; sha256="1b6k9jjwfxll7w3gnwnx8r912f9kfrxikhq8143f53m3ngq1ng32"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.5.0"; sha256="0h7nk28ny4capnji1j5m2kzsc7l8a1z7icx0iak87pk4abzqlzmm"; depends=[coda ggplot2 igraph rjags]; }; @@ -6557,7 +6585,7 @@ in with self; { bnpa = derive2 { name="bnpa"; version="0.3.0"; sha256="0qsxk47i7q4d8hbs2xj5k5sf8bqyzhq7rbj4y7w8ljprznlydgl9"; depends=[bnlearn fastDummies lavaan Rgraphviz semPlot xlsx]; }; bnpsd = derive2 { name="bnpsd"; version="1.3.13"; sha256="0wnbsz5c52pglycykzkd5lsnxfkjqva0xhwnb4kz7x1zd8vbd1sl"; depends=[ape nnls]; }; bnspatial = derive2 { name="bnspatial"; version="1.1.1"; sha256="1drm9ia4lr80wahbbn9xrw658ppmgxm4iadwv77jz1x786dda2n1"; depends=[doParallel foreach gRain gRbase raster rgdal sf]; }; - bnstruct = derive2 { name="bnstruct"; version="1.0.13"; sha256="0naclrnhnqc87w6nw0yl3rhslqw3784hqqvmyfdg2508k9x913g3"; depends=[bitops igraph]; }; + bnstruct = derive2 { name="bnstruct"; version="1.0.14"; sha256="1igdr538d2nfx3ap13y6p6wb6jfvb3hcg80fapjvnzc2304sk95p"; depends=[bitops igraph]; }; bnviewer = derive2 { name="bnviewer"; version="0.1.6"; sha256="036jmypxg2ciiz388f90vm73l9djhpi6gzp1ibn9l0x3d072r7zz"; depends=[assertthat bnlearn caret e1071 igraph shiny visNetwork]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1.1"; sha256="0rdbk3f95iw4352fl9d81ir503q072chbb4hn1k12sp1wjc3apid"; depends=[]; }; @@ -6566,13 +6594,13 @@ in with self; { bolasso = derive2 { name="bolasso"; version="0.2.0"; sha256="1fbd39jyxq0zfbybrzzwnyql2w8hf2b9133jj0nl99d1326wr7dh"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; bold = derive2 { name="bold"; version="1.2.0"; sha256="0r54ylxgmq9qnh1f36k4hafh80n86ibk4a994f8b1rnb9bq9f5cg"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; bondAnalyst = derive2 { name="bondAnalyst"; version="1.0.1"; sha256="0bygaldjgxbjqjnlgs64vdayr7kp6sjl6qffdywxpi7v0yfi072a"; depends=[Rdpack]; }; - bonsai = derive2 { name="bonsai"; version="0.2.0"; sha256="0haqdvvh5ydyzifr9mzyyfa2sj6n9kfvj5w5wj815n9p0mw67r8h"; depends=[dials dplyr foreach glue parsnip purrr rlang tibble]; }; - bookdown = derive2 { name="bookdown"; version="0.29"; sha256="08zpky94bdbjsbhi90pymxpczpfkjxwbx7p1v7ip8raw9b23skjv"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bonsai = derive2 { name="bonsai"; version="0.2.1"; sha256="048nfgnzsi0zz0nsxl30nsjg63nszy44881s49g9hgs3vng2vmp2"; depends=[cli dials dplyr glue parsnip purrr rlang tibble]; }; + bookdown = derive2 { name="bookdown"; version="0.30"; sha256="1i54sbrdv2c9l6pcm3229wlwdnhn0x6f2918adszm5k8qdp0h74i"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; - boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; + boot = derive2 { name="boot"; version="1.3-28.1"; sha256="0lzz08fpn80qzm197s4806hr6skanr3r3rlx6bx7zk4cripygkfl"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; - boot_pval = derive2 { name="boot.pval"; version="0.4"; sha256="05gxpky92f9jhvhv4faj49ql8a9mrfqdgk802i0hdw4lmnn90k7j"; depends=[boot car lme4 Rdpack survival]; }; + boot_pval = derive2 { name="boot.pval"; version="0.4.1"; sha256="0igrxp5ii7wxpx7i8z8dws41yjhiysdhvl19ppcicfx54z62c09d"; depends=[boot car lme4 Rdpack survival]; }; bootCT = derive2 { name="bootCT"; version="1.1.1"; sha256="172a4a2plvhwqvippwbrshbn2n237qnadl4pwx7f5bfs25ichqn0"; depends=[aod ARDL dplyr dynamac gtools pracma Rcpp RcppArmadillo stringr usethis vars]; }; bootComb = derive2 { name="bootComb"; version="1.1.2"; sha256="0gg07ck2nf0ddqc5nflk5ms16m3c6dlf1a77m58q581mkavj6gyb"; depends=[MASS]; }; bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; @@ -6597,6 +6625,7 @@ in with self; { boussinesq = derive2 { name="boussinesq"; version="1.0.4"; sha256="1gl3hapb31qgdh6jr15czlvdmr58vz2vmlv7p89zpqnyl9lc7vgm"; depends=[]; }; boutliers = derive2 { name="boutliers"; version="1.1-1"; sha256="01dp1w5lxmn6nixajg6dz0qincm0i1in03q7g284v37qnszyimqs"; depends=[metafor]; }; box = derive2 { name="box"; version="1.1.2"; sha256="10hgq9v0bjzkcnya0k7fjlidri02c1p6ph70q3gvi29qp3b22plq"; depends=[]; }; + boxfilter = derive2 { name="boxfilter"; version="0.1"; sha256="1q3vs2js1l5416rc1krsglfv4hz00xdgb2cmmxdmhr6bzxq8mxdc"; depends=[ggplot2 gridExtra]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.4.0"; sha256="0yfkkafrq329l6yxbnpwm8yqidixxh7k124xjy5xa92pbng2clbd"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.6"; sha256="1hdm4p7zx2r566zaiyw06qg3c790gsvylrvav7g9fl4i1x6qgkyk"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr jsonlite lifecycle magrittr mime purrr rio rlang stringr tibble]; }; bp = derive2 { name="bp"; version="2.1.0"; sha256="0qdpm5nfx2jhc0s77x839jdmk07c88xf739dwf2n8hqhk24y0cdr"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; @@ -6625,9 +6654,9 @@ in with self; { brassica = derive2 { name="brassica"; version="1.0.2"; sha256="1av52p39jsv54q02v8xa7xilwmz5vzj6zy68y9m5lgl6s86r509y"; depends=[]; }; bravo = derive2 { name="bravo"; version="2.1.2"; sha256="0gs8vplb3sfp82bldbq1glqhr6j2p4pbzxfbhy61sjs88kvh0bp2"; depends=[Matrix Rcpp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; - bread = derive2 { name="bread"; version="0.2.3"; sha256="04kgr0f6m1mfczyp46gafkcfxs6lz2yf6qwzbyh04z4psnn3xpyh"; depends=[data_table dplyr stringr]; }; + bread = derive2 { name="bread"; version="0.3.1"; sha256="0pgcrasqmsa5hq9a50w03fay898zzh2h0lb755pfbna70s6gxxgs"; depends=[data_table]; }; breakDown = derive2 { name="breakDown"; version="0.2.1"; sha256="1jm9zmyfcnr9mjz7b30k34h47msvik9ngfysi6dc48gvrk41yk9q"; depends=[ggplot2]; }; - breakaway = derive2 { name="breakaway"; version="4.8.2"; sha256="1mfbzfsqqyfmhkm32qb5237q9n8qwjbqk5vsszs5lkfwi42fz3by"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; + breakaway = derive2 { name="breakaway"; version="4.8.4"; sha256="08mxp41d79iaqbz96bpzw7halasijghv0557ccz5p563y5lk3n3m"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; breakfast = derive2 { name="breakfast"; version="2.3"; sha256="03qkablrfgxp5c0kpyj38z831f6dwxwql2xkfpkpfjdiaqs7snrd"; depends=[ggplot2 plyr Rcpp]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; breathtestcore = derive2 { name="breathtestcore"; version="0.8.4"; sha256="01hqcbqifvq38a1ab0q2c02zavnlajaa41ia0r63d2m6plmdpbsf"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; @@ -6640,6 +6669,7 @@ in with self; { bridger = derive2 { name="bridger"; version="0.1.0"; sha256="1rx16zwa3zz4bs7h0b75vsx78dvkif8d9c7prb5pmwccizll7v53"; depends=[cowplot dplyr ggedit ggplot2 glue gridExtra kableExtra magrittr patchwork pdftools scales stringr tibble tidyr]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="1.1-2"; sha256="0sry1xwiv4y52k44hq6z8y2kysp5kxgl4dix3m94svg3ladd7v2l"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; + brif = derive2 { name="brif"; version="1.2.0"; sha256="1z9jz2diwy5n07dd370wsbjl7dz62cai2biwnlk29cfp4rq5l83k"; depends=[Rcpp]; }; brinton = derive2 { name="brinton"; version="0.2.6"; sha256="1zhiz93n9pclib2aczp7qslydjn9l5j17881gg0cga59f96bkwfw"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander RColorBrewer rmarkdown sm tibble]; }; brio = derive2 { name="brio"; version="1.1.3"; sha256="1inwzvlf6zj6gi47gd0byzqv02qajb3l475z8pjvx2b1hm0r1a7a"; depends=[]; }; briqr = derive2 { name="briqr"; version="0.1.0"; sha256="073pdk1094ng4kggzdjvihl791r2qlja1j2w3pfmh2027kn520r8"; depends=[dplyr httr jsonlite magrittr tibble]; }; @@ -6650,11 +6680,11 @@ in with self; { brms = derive2 { name="brms"; version="2.18.0"; sha256="04g10yx66izpghrqip5h9i0w0bds4xw2vlhp6crydi6i7kh4p4b3"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rstan rstantools shinystan]; }; brmsmargins = derive2 { name="brmsmargins"; version="0.2.0"; sha256="1qdfig1cy5cf3csky995m0jybb2hyp7yq7ka67wircrln919c1nm"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; brnn = derive2 { name="brnn"; version="0.9.2"; sha256="17vsvncilisjp3sjblwg0knn8l4984p4ndql6rbq3wg8n677sy9x"; depends=[Formula truncnorm]; }; - brokenstick = derive2 { name="brokenstick"; version="2.3.0"; sha256="18bxfj79s4gynp1g13gav7lf3xi8cf3ff7dkfs997lg1ajqfkmq2"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; + brokenstick = derive2 { name="brokenstick"; version="2.4.0"; sha256="012r5y2w8y721a3n027j6mc6iz78q1rylr89bshnq0r6g522vw2c"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.80"; sha256="02k8bxv8kpkasxn2m1z5ccvr9gg9lc8k3hskyaf7gvr4khhf575s"; depends=[ggplot2]; }; broom = derive2 { name="broom"; version="1.0.1"; sha256="14i8729m38nxf5q344isgq4006p3b50wi3q8jgckxqphhnj5lpjb"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; - broom_helpers = derive2 { name="broom.helpers"; version="1.9.0"; sha256="09ygd6fpm5hb5gjaqy7ihc4k6gj1mbb54f95saj49wmdkcsm292m"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; + broom_helpers = derive2 { name="broom.helpers"; version="1.10.0"; sha256="1kimf5i3i9c5s383rvn1cdwzs1rcknxahhmcn63hkydds0wx2car"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.4"; sha256="1ck0dk5fnacvwsvhp43m983gkmskw1a7f1bjkq5hacka64lwscbn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; brotli = derive2 { name="brotli"; version="1.3.0"; sha256="0zivyhyf6g7lb8r919a1cc2xvi36g6cszpl9rr200nfvvw6r6zf1"; depends=[]; }; brpop = derive2 { name="brpop"; version="0.1.5"; sha256="12ngmyqbrqv1hwyh9y8wf9dyr816fxan8vqw0r2jgymsir9c5k6s"; depends=[dplyr future magrittr multidplyr rlang]; }; @@ -6671,19 +6701,21 @@ in with self; { bsamGP = derive2 { name="bsamGP"; version="1.2.4"; sha256="1zga3h747fh61n9m88gazc2p2i905cwvwdkql3rh65h26cphvvs6"; depends=[ggplot2 gridExtra MASS]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; - bslib = derive2 { name="bslib"; version="0.4.0"; sha256="1hkmaj0mpygbf6qr1955biv9z4q3khflyqi5x0c3dwi6qz74xspv"; depends=[cachem htmltools jquerylib jsonlite memoise rlang sass]; }; + bsicons = derive2 { name="bsicons"; version="0.1"; sha256="1506p4sskwgszam1vk5slw9nznki6gdf1s95s8cpfa3dih3lbjby"; depends=[htmltools]; }; + bslib = derive2 { name="bslib"; version="0.4.1"; sha256="0bz6w34shk2pijq5hvjv2bg8xhhg4yazn4wcix7436yi9k41zgaf"; depends=[cachem htmltools jquerylib jsonlite memoise rlang sass]; }; bsnsing = derive2 { name="bsnsing"; version="1.0.1"; sha256="1a1vxh1fc5vz7wk73m093bvpz9qb52cfrxcj5yiqm56v309jckzk"; depends=[Rcpp]; }; bspec = derive2 { name="bspec"; version="1.6"; sha256="19l1sagx6kn6i8mcs3i0h6rh7rwsyhphncv55jywpv4g6616kqcv"; depends=[]; }; bspline = derive2 { name="bspline"; version="2.1"; sha256="17k9phl5xlk5gqr220gp2cz749apqfi94kka7q6rzywkn1fb85ff"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; - bsplus = derive2 { name="bsplus"; version="0.1.3"; sha256="1grn2i2xxq5fhkqb7lqsfhbfckr6i3ddy7mikgxz6lifk4rc4mxx"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; - bspm = derive2 { name="bspm"; version="0.3.10"; sha256="1yv9wmsa9xipgv3l1rgdkfbr5ysx5b317xsw0smwsyn7rd6fj02d"; depends=[]; }; + bsplus = derive2 { name="bsplus"; version="0.1.4"; sha256="0bf8qvj7pk3xn7g4p89as1xzx56c75n842g27rj6lcgsf9rdmv9g"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; + bspm = derive2 { name="bspm"; version="0.4.0"; sha256="05v0sxa9cs8k0c47hwkfmadfy9ibl0nhs9gjpf6p2hh56q75fbsq"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; bssm = derive2 { name="bssm"; version="2.0.1"; sha256="19ii7hs4plgq31yiyr0258y22xckd5dv7k5dp2cwkzrr3h544ylz"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; bst = derive2 { name="bst"; version="0.3-23"; sha256="1wx039cl8s1j1dwjg50ivn39fckkf8mzgrm953bg02w0p0fpz5bh"; depends=[doParallel foreach gbm rpart]; }; - bsts = derive2 { name="bsts"; version="0.9.8"; sha256="14008fcrnpvnwgx7dp0v14ax4iw8p3772jf7fbz26vfv5g6z73lc"; depends=[Boom BoomSpikeSlab xts zoo]; }; + bstrl = derive2 { name="bstrl"; version="1.0.2"; sha256="10ncaicda2rwwrl2ykbrdhh51fziy3ahwp8z859cr2k4v19lviv0"; depends=[BRL doParallel extraDistr foreach]; }; + bsts = derive2 { name="bsts"; version="0.9.9"; sha256="0zaic91yw214bq3285kw7wj8h1jf4g1z9lahgpmikvlqhgy5744g"; depends=[Boom BoomSpikeSlab xts zoo]; }; bsub = derive2 { name="bsub"; version="1.1.0"; sha256="112hlvg15jlzg3drfzkslaly42vnvsycn9vif0w3iaw5fzsaa954"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; bsvars = derive2 { name="bsvars"; version="1.0.0"; sha256="0d5c8fjnigm4zsfzhki1vsdgc310dba716sdiag8vqq7m1r3g2yc"; depends=[GIGrvg R6 Rcpp RcppArmadillo RcppProgress RcppTN]; }; btb = derive2 { name="btb"; version="0.2.0"; sha256="1gm03md6ky134nzmnnp054mi2w8kl4bgcgg4k65zf2cyniz4arxq"; depends=[BH dplyr magrittr mapsf Rcpp RcppArmadillo RcppParallel sf]; }; @@ -6712,6 +6744,7 @@ in with self; { bursts = derive2 { name="bursts"; version="1.0-2"; sha256="0cbksnxavkssp3mz80rz0sdvbg21m5yzjn009wclinz12mm1p9rq"; depends=[]; }; busdater = derive2 { name="busdater"; version="0.2.0"; sha256="0hib73zay9r7rv49zv1lx0l15jzjyli9f1vrk414l8apggvx4c6s"; depends=[lubridate]; }; butcher = derive2 { name="butcher"; version="0.3.0"; sha256="1pq86hn6fcrcwccx82msmmn2s0qxp1k6mybip3yygfpl0cvl0zd3"; depends=[cli lobstr purrr rlang tibble vctrs]; }; + butterflyOptions = derive2 { name="butterflyOptions"; version="1.0.1"; sha256="0kmzrk8gqyqrpp4wfsl04cff13m6aiag7d6fbq7kbb6ln8fa6as9"; depends=[dplyr ggplot2 magrittr tibble]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvartools = derive2 { name="bvartools"; version="0.2.1"; sha256="18spmp2w6gzh3pyfa3x609jp7f3asmkba74kpmb5sqgjvrhxybxa"; depends=[coda Rcpp RcppArmadillo]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; @@ -6735,8 +6768,7 @@ in with self; { cOde = derive2 { name="cOde"; version="1.1.1"; sha256="1h3bp97lqd1jvgnablhxdncmvbf5qwphqbs7xy3r31vpamslz77i"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; cPseudoMaRg = derive2 { name="cPseudoMaRg"; version="1.0.1"; sha256="1mf78pilhx4mqv8n0xrdzn9wkvhnb3bs7rill7n588f18bnjp9mh"; depends=[]; }; - cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; - cSEM = derive2 { name="cSEM"; version="0.4.0"; sha256="1h9n33akvh7cyl1r3pa64nxzr9z1723fqcfxa4p3kh6jp5ysqlvp"; depends=[abind alabama cli crayon expm future future_apply lavaan lifecycle magrittr MASS Matrix matrixcalc matrixStats polycor progressr psych purrr Rdpack rlang symmoments]; }; + cSEM = derive2 { name="cSEM"; version="0.5.0"; sha256="0a0pv01ynlac53rdwjhw20alx72ip23izvcxv8bdkdxa41ai3bi5"; depends=[alabama cli crayon expm future future_apply lavaan lifecycle magrittr MASS Matrix matrixcalc matrixStats polycor progressr psych purrr Rdpack rlang symmoments TruncatedNormal]; }; ca = derive2 { name="ca"; version="0.71.1"; sha256="095lk7p2b9835hc3a03c4019wg0baf0dhz6c2vqpaq1m9k4jy304"; depends=[]; }; caMST = derive2 { name="caMST"; version="0.1.6"; sha256="0zg4j81ikm8izgvn4p80z2bxrrg4qlccq4cs3pn2iwy25d6aiknn"; depends=[catR diagram mstR]; }; caROC = derive2 { name="caROC"; version="0.1.5"; sha256="0cklvzfg95yyr37hdfmrna2z6lnhf9f6rrqcjsba1wjmqs8abgsh"; depends=[quantreg RColorBrewer]; }; @@ -6764,8 +6796,8 @@ in with self; { calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; calibrationband = derive2 { name="calibrationband"; version="0.2.1"; sha256="1m3dp7h9dy1ipji3vinknqyhbw1gbv48473rbhpykps8hzrqg206"; depends=[dplyr ggplot2 magrittr Rcpp rlang sp tibble tidyr tidyselect]; }; calibrator = derive2 { name="calibrator"; version="1.2-8"; sha256="1m9g1pmnr6d9jkg5ab0l0cbqfj7kmx7sdmcdqdhn9ifyhhn7812y"; depends=[cubature emulator mvtnorm]; }; - calidad = derive2 { name="calidad"; version="0.3.0"; sha256="1wqb3bc5y0dlny2h476li8zqm83y8388zqhmaiy8hvh350wnq3s5"; depends=[dplyr haven kableExtra purrr rlang stringr survey tidyr]; }; - callr = derive2 { name="callr"; version="3.7.2"; sha256="01q3b0w1cbrryvv1dwvnyd3j1f09xmhnwg1wskc51r3r4qhqmnhj"; depends=[processx R6]; }; + calidad = derive2 { name="calidad"; version="0.4.0"; sha256="1b64wqfr4zb1r5bjbw5jbhs2yi1w91nv66s57h0fnija839zr9kw"; depends=[dplyr haven kableExtra purrr rlang stringr survey tidyr]; }; + callr = derive2 { name="callr"; version="3.7.3"; sha256="0knh5yxhxwjz96kbjrq524w4j8cac10k6mghhmblq79s0zgzwysn"; depends=[processx R6]; }; calmate = derive2 { name="calmate"; version="0.13.0"; sha256="17gfk3am8frj9pqx31pmjswm5nvca9nqbanl0qj4ypsr8wymix7w"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; camcorder = derive2 { name="camcorder"; version="0.1.0"; sha256="10w93897708rcbab4l8942h3grlsw822mqkj7hcp1p8fakgnrxkd"; depends=[ggplot2 gifski jsonlite magick rlang rsvg svglite]; }; @@ -6780,13 +6812,13 @@ in with self; { canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; canadianmaps = derive2 { name="canadianmaps"; version="1.0.0"; sha256="1r45d65w8yfgwj8xf6lhsw0fi1b8j8gyayxrcs7wy56kacjjvym8"; depends=[dplyr ggplot2 ggrepel RColorBrewer rgdal sp]; }; canaper = derive2 { name="canaper"; version="1.0.0"; sha256="18b1sr6xpf4iljjb5jcxldlfk4x1d4w9j2pw8196r1k02qpg79ki"; depends=[ape assertr assertthat dplyr future_apply phyloregion progressr purrr tibble vegan]; }; - cancensus = derive2 { name="cancensus"; version="0.5.3"; sha256="0lrw983bml8l130kcampzacrdxa0frm80h7vpr9n6wwnq4vmcbr4"; depends=[digest dplyr httr jsonlite rlang]; }; + cancensus = derive2 { name="cancensus"; version="0.5.4"; sha256="0pzm58fxhd330m5iq2k6527p5jsbfp2fj05mma39ib3gxliniwni"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; - cansim = derive2 { name="cansim"; version="0.3.12"; sha256="1vc92kv5d517gzwp6mbi3913d8bkikjxbaj4jyf9981zdqzgc3b8"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.40.6"; sha256="1jdx3yfl10s1y4wxa48dydrfb3j8a8b9aismvmqyf8gm11l4y218"; depends=[htmltools htmlwidgets httr jsonlite]; }; + cansim = derive2 { name="cansim"; version="0.3.13"; sha256="0jxgrybrilqbnsrrd9k3hnjcyi1pvrdlb6ni3qgi3sj1x3zbkj3i"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.40.6-2"; sha256="0fxnki66y7i0gqhjnjz673nmngq7scc3dasc2frn8w2ysj7v32j5"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.1"; sha256="0srgajj77a66pxj4kghjv4hjswv8arfmxbq25mpccc0fzalz1zlp"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap pracma propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape yaml]; }; @@ -6802,7 +6834,7 @@ in with self; { carData = derive2 { name="carData"; version="3.0-5"; sha256="06j52rpbqi6fj7chfjwjbwbr6slrbb7i3aygv66gnfiyndcp3rq2"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; caracas = derive2 { name="caracas"; version="1.1.2"; sha256="0my74q2l4vncans5s541mphl5pvkd4knxb0i396yf5w6a1vnqwlw"; depends=[magrittr reticulate]; }; - carat = derive2 { name="carat"; version="2.0.2"; sha256="0f6r4x5skjq7vcmwfhnrzrf69ry360y7wqrr5gsys8l5nv6qbjii"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; + carat = derive2 { name="carat"; version="2.1.0"; sha256="12b6n99m1zcqxqsa2dk36i6g9qwmd8lzr3mlvj5454n4bgvqb4h0"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; carbonate = derive2 { name="carbonate"; version="0.1.4"; sha256="01k8c49v8ybgcwdr9ipw319lxw4p14w9bzl54j1ljbajdzgzcgwk"; depends=[clipr details httpuv httr jsonlite magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; card = derive2 { name="card"; version="0.1.0"; sha256="1api0j06fp5av5a48vnnm1wvwdcskynf0xsj9pb41njxdh9v8daf"; depends=[broom data_table dplyr generics ggplot2 ggrepel hardhat Hmisc lubridate lutz magrittr purrr readr recipes rlang sf stringr survival tibble tidyr]; }; @@ -6814,7 +6846,7 @@ in with self; { caretForecast = derive2 { name="caretForecast"; version="0.1.1"; sha256="0z8r64cb3w0m5a7khysvfmnf1ywa7svi5lvxiwx1a6j6868zbxlr"; depends=[caret dplyr forecast generics magrittr]; }; carfima = derive2 { name="carfima"; version="2.0.2"; sha256="1n68jqn42m54xn7jq8qywrpnvggrcsgvgnlqg6nw0pgiplbkynih"; depends=[DEoptim invgamma mvtnorm pracma truncnorm]; }; caribou = derive2 { name="caribou"; version="1.1-1"; sha256="1spz5ymqv8k48yg0rrdrs9ylasdif2jwcq2z33gagd6yrim1a3q3"; depends=[]; }; - caroline = derive2 { name="caroline"; version="0.8.0"; sha256="0xhr4g020xyd2jzzpknw6zdh33ihsclwxrkkl4mclybj3xqn9x2q"; depends=[]; }; + caroline = derive2 { name="caroline"; version="0.9.0"; sha256="1j1s4jli3pjl815fhmhz063y8aimz1qr14gacf9rvs7hyandlcbj"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; @@ -6822,18 +6854,19 @@ in with self; { cartogramR = derive2 { name="cartogramR"; version="1.0-9"; sha256="0j8xa11g3m9sp2vcx0z6lk6cpdd8f83r2qx1ibcz28h5s6nmvn69"; depends=[data_table sf]; }; cartography = derive2 { name="cartography"; version="3.0.1"; sha256="1ginq160ag0sv5xfiqc5a5vizsqvl3maw61yskwhfnjb2lcgk2yg"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; casabourse = derive2 { name="casabourse"; version="2.0.0"; sha256="1s7zp44cmfnq4l9rzydqpnv9s2z4v7bvng8diz3bhzkg2zhpglnq"; depends=[gsheet R_utils RJSONIO rvest]; }; + caschrono = derive2 { name="caschrono"; version="2.3"; sha256="06q327cqa0hb0q60zyyj6r7ydcw9big597nwmmhb8px9j9d4pxdr"; depends=[Hmisc zoo]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.8"; sha256="0bp2g0zzcspa6riinsa3bp1qwiip6z058hn2y5mw0w9xah8a685a"; depends=[]; }; - casebase = derive2 { name="casebase"; version="0.10.1"; sha256="0yrzl961apslhk77gdnl9mmh1sdxw1az8lpl393n30qs1kl6g4zv"; depends=[data_table ggplot2 mgcv survival VGAM]; }; + casebase = derive2 { name="casebase"; version="0.10.3"; sha256="0my4vsirm4n8qd3b81ml1hkllimz41l0819njc92znfyg7y6pj63"; depends=[data_table ggplot2 mgcv survival VGAM]; }; casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; cassowaryr = derive2 { name="cassowaryr"; version="2.0.0"; sha256="1gk54haciy3vj7xj6cji1v90xh7g8790zq1rykyispx09jr2dpx3"; depends=[alphahull dplyr energy ggplot2 igraph interp magrittr progress splancs tibble tidyselect]; }; - castor = derive2 { name="castor"; version="1.7.4"; sha256="0d0i974sa289pv0yw7wi3cdd8gpn3nyxfvm3vjgvr0hdr7bah6cp"; depends=[Matrix naturalsort Rcpp RSpectra]; }; + castor = derive2 { name="castor"; version="1.7.5"; sha256="0dfs0rjrw9zrs9n0avy3fq5r7vi4alvd55l7582j47dbwj82i1a5"; depends=[Matrix naturalsort Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-7"; sha256="1a5csycaddg7cmfn51sw520b9bbpp07a08hsi2f6lpzqiszhczj1"; depends=[]; }; cat2cat = derive2 { name="cat2cat"; version="0.4.5"; sha256="07c6km66rps24z8mwa588gigl67j50icmvbqb7x9acz1938sqlwg"; depends=[MASS]; }; catIrt = derive2 { name="catIrt"; version="0.5.1"; sha256="1wagk9f9mvf3b5yvwpas9yqjzpcp786d37wn71jj1af0khry8k62"; depends=[numDeriv]; }; catR = derive2 { name="catR"; version="3.17"; sha256="178pq6cy3kjpd7mpaky2y8f18561gsf727y0y6rmgm2bn71p2i76"; depends=[]; }; - catSurv = derive2 { name="catSurv"; version="1.4.0"; sha256="02hrq51yk7zxz6vr4ykjwjnim9g09d63vpy3g0sm9hidbxryq139"; depends=[BH jsonlite ltm plyr Rcpp RcppArmadillo RcppGSL RcppParallel]; }; + catSurv = derive2 { name="catSurv"; version="1.5.0"; sha256="0jw7jlam7d44g9sbwmxckm4mywhky2a6h1w5w849g47p7mvi32dc"; depends=[BH jsonlite ltm plyr Rcpp RcppArmadillo RcppGSL RcppParallel]; }; cata = derive2 { name="cata"; version="0.0.10.9"; sha256="1226la2gm0r5wayharpmgm6lm7nr681xnzc0rpk8p39wwdyixmmr"; depends=[]; }; catalog = derive2 { name="catalog"; version="0.1.1"; sha256="1j43c34qdklv8pskaidq5fxrygv9lngamdcrkij9c844qj7iff14"; depends=[dplyr sparklyr]; }; catch = derive2 { name="catch"; version="1.0.1"; sha256="1a63d1a6pzzirdzswngjj036jmg41hbiadwriws7k05qp95jdh6a"; depends=[MASS Matrix tensr]; }; @@ -6842,17 +6875,16 @@ in with self; { catdata = derive2 { name="catdata"; version="1.2.2"; sha256="14kx7yi0cv6dyh9wjasb8gn6cp1bhglgwql7dc2a7lqvdcp0d5vj"; depends=[MASS]; }; cate = derive2 { name="cate"; version="1.1.1"; sha256="0wqfblyr7rjx9wnpbnv5lw2zv7nw3mbdjn866l1ng779vka1wdc5"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; }; categoryEncodings = derive2 { name="categoryEncodings"; version="1.4.3"; sha256="0ns8ml2hm41650bi8yag6w3k9nb2ky43370444cgy3i7ajpzw87w"; depends=[data_table glmnet sparsepca]; }; - catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; cati = derive2 { name="cati"; version="0.99.4"; sha256="02g33kkp97kswiyjsd378zpa3fc9rjk2d9f4l1gdh7pzglabsmgl"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; catlearn = derive2 { name="catlearn"; version="0.9.1"; sha256="0l7ns9dmgl5k9nmywknna9hi8bmvlijds89pppywd7karksr5i66"; depends=[doParallel dplyr foreach Rcpp RcppArmadillo tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catmaply = derive2 { name="catmaply"; version="0.9.2"; sha256="1rwp2ca6m4k104yc5pim66r5fpcakvzmkpg732jz3j34pw3w6nss"; depends=[dplyr magrittr plotly rlang]; }; - catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; }; cats = derive2 { name="cats"; version="1.0.2"; sha256="0snc5vrf8qm53yd42gskhnpp6lfgfkldgpjj3jbcry0wpbfc0dv0"; depends=[doParallel dplyr epitools forcats foreach ggplot2 mvtnorm openxlsx plotly purrr tidyr zoo]; }; catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; catsim = derive2 { name="catsim"; version="0.2.3"; sha256="1gz38xrzbray5ciiimkzdass8bhmiqxh6bcngjm5i8dvafk5gf9g"; depends=[Rcpp testthat]; }; cattonum = derive2 { name="cattonum"; version="0.0.5"; sha256="11h9nh2i2bmd0b562l5avhwpj9ppnfmzd9nsv94cymhwn5h6nmg6"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; }; + cauchypca = derive2 { name="cauchypca"; version="1.0"; sha256="1325cr6799ky3hxvhkb30xjq9pvk1wsm3rj0y11slwhs33hvl621"; depends=[doParallel foreach Rfast]; }; causact = derive2 { name="causact"; version="0.4.2"; sha256="059s70q7pdhbym2aj8ww35j6iv9n3am4nh7ywqg41ahyhc7mm9k0"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph lifecycle magrittr purrr rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.0.1"; sha256="08ccdzb5ssqhzkr3z3b8vz762mwflh33s6rrmsb9srvkk661lly2"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; causalDisco = derive2 { name="causalDisco"; version="0.9.1"; sha256="1lni0y76prhvw60m0awwgmfadwlv1ciywlr85sr8ig2vaxf1smh9"; depends=[clipr gtools igraph pcalg RColorBrewer scales]; }; @@ -6864,11 +6896,12 @@ in with self; { causaloptim = derive2 { name="causaloptim"; version="0.9.2"; sha256="02d5rrs1h80c49664bicqh7il6x1r4wfid9791si7a35jz8gq0h2"; depends=[igraph rcdd Rcpp shiny]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; causalweight = derive2 { name="causalweight"; version="1.0.3"; sha256="1v1vmm5kfay3padkkr87yp5g539lqk5h3rl6w982glpqs8q80c59"; depends=[e1071 fastDummies glmnet hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; - cba = derive2 { name="cba"; version="0.2-21"; sha256="0j2hbp0xlfp28gqgnkcvmb4yp1kc5m2bp5x7pr4m1pz2b1s7h7m6"; depends=[proxy]; }; + caviarpd = derive2 { name="caviarpd"; version="0.3.4"; sha256="1rc2h6a4i0n4wf0masyrq21vazm96kzhb7gz73h08a2ig1s66vhp"; depends=[]; }; + cba = derive2 { name="cba"; version="0.2-23"; sha256="18al5kavn3q2h6gl4s1hgxhy9ysv9fq602ffmzla251g380b166n"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbinom = derive2 { name="cbinom"; version="1.6"; sha256="1vi2kjlss4fmra1h8r6xgk4y66gzpdp61hcyzby2rqji93sib195"; depends=[Rcpp]; }; cbioportalR = derive2 { name="cbioportalR"; version="1.0.1"; sha256="01gfzghfww4dfc6sliy4vfxjghncchlyn1f37prbjbvfx921v7xp"; depends=[cli dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr]; }; - cbl = derive2 { name="cbl"; version="0.1.1"; sha256="0hk2c92vmka17hbc1dy0mz86v888drh6qbgd1dvjzszqimx1si4i"; depends=[data_table foreach glmnet lightgbm]; }; + cbl = derive2 { name="cbl"; version="0.1.2"; sha256="1yrhpzwj1mzyrb38fxljq3w93s2ab2ann2ryywai3g7gdmfsn20q"; depends=[data_table doRNG foreach glmnet lightgbm]; }; cbq = derive2 { name="cbq"; version="0.2.0.2"; sha256="0vg1mhk147pib61v4im3ikc551c2nmmcfah9fjw9c978gf81g32n"; depends=[BH Formula Rcpp RcppEigen rstan rstantools StanHeaders]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.5.1"; sha256="02dalankaa4lfv9r7bc9cphmwb0mq6an7bs44rihipj8dsjd0v9y"; depends=[jsonlite whisker]; }; ccRemover = derive2 { name="ccRemover"; version="1.0.4"; sha256="1npd0vx2hyg7qbwd650987i49v5cxr6i1hlj5rw6fxc0b808s596"; depends=[]; }; @@ -6910,12 +6943,11 @@ in with self; { cdrcR = derive2 { name="cdrcR"; version="0.0.1"; sha256="1z6z27rnqg07i5j09q0xwy9bvwci1vc2vijp6r733diivyhcraiv"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect urltools]; }; cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; ceRtainty = derive2 { name="ceRtainty"; version="1.0.0"; sha256="01wgvjpxqwhgh6vx9vbmiv4d88bps790l6ij3gw5w69hbrrd9ixi"; depends=[dplyr RColorBrewer tidyr]; }; - ced = derive2 { name="ced"; version="1.0.1"; sha256="0xrf3y1cr4dylhh2xr1gggnwdwn7riz37g6yw55hyryg03hxkms6"; depends=[Rcpp]; }; ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.4"; sha256="1pbssq8zf1cmihs3fg5zgb3k876magxl84jld6vcfvvp76sxhr7l"; depends=[gplots minpack_lm]; }; - cellWise = derive2 { name="cellWise"; version="2.4.0"; sha256="1pqs7zw06ycr7413xxrnyrvq7m8ykhvni42n9s236822a0pbrpyb"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales svd]; }; + cellWise = derive2 { name="cellWise"; version="2.5.0"; sha256="1ls455d4y3mfkhz0g45qkhhd4jl7awipakcrsi87lskixzza73rr"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; cellpypes = derive2 { name="cellpypes"; version="0.1.3"; sha256="0wyf0p5x7dz8qy7xayp8n52cvk73fai13vzsknfk1qvs8wygnlfp"; depends=[cowplot dplyr ggplot2 Matrix rlang scales scattermore scUtils viridis]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; @@ -6923,14 +6955,14 @@ in with self; { cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censReg = derive2 { name="censReg"; version="0.5-36"; sha256="0r8pyscsw3m8lf6mx70sjk70k7i1jfjkk2qzq19m85q3byx447n6"; depends=[glmmML maxLik miscTools plm sandwich]; }; - censable = derive2 { name="censable"; version="0.0.3"; sha256="15274slkqkmwvipjb7p58knwpmq6iahpik2dg80j96fjdrpppl0g"; depends=[dplyr magrittr memoise rlang sf stringr tibble tidycensus]; }; + censable = derive2 { name="censable"; version="0.0.5"; sha256="15p4ggnkcddm2lglf798bcjghppx0pqzc8nyljyiw0hwsw14c7yg"; depends=[censusapi dplyr magrittr memoise purrr rlang sf stringr tibble tinytiger]; }; censo2017 = derive2 { name="censo2017"; version="0.6.1"; sha256="02q25kxv6kxj3634xk7vd3mwa8qvnmagwyh020z9yq6l6qfn2s6b"; depends=[cli crayon DBI duckdb httr purrr rstudioapi tibble]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; censored = derive2 { name="censored"; version="0.1.1"; sha256="1878791vrm564mvlw0cw4spls03y7vgyc9r1qcfq98diffm9cqln"; depends=[dials dplyr generics glue hardhat mboost parsnip prettyunits purrr rlang survival tibble tidyr]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; censusapi = derive2 { name="censusapi"; version="0.8.0"; sha256="1wswd6kmb0fbyc3zs3q3dhhaa1la1z5alz4vg485ac9wacnab60r"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; - censusxy = derive2 { name="censusxy"; version="1.1.0"; sha256="07xjkkfgr9q4g3hs6fr24rvmhhg4abxp6zxzq6qwc0r499qbx33y"; depends=[doParallel foreach httr]; }; + censusxy = derive2 { name="censusxy"; version="1.1.1"; sha256="1gdry73xzcixa3hfchlf2xmmlnhk1vsg7k3axvynvlr493i7qf2a"; depends=[doParallel foreach httr]; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; }; @@ -6949,7 +6981,7 @@ in with self; { cfda = derive2 { name="cfda"; version="0.10.1"; sha256="0v81wgqkp48gf11nxpg1dfj93qk55n8d7mfc1cyymkkhxzzdar44"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.20"; sha256="0x2gzqcif79hkrchx50j5yvxwwpgv8g8bxisfsa1xd7sja609hw7"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; - cffr = derive2 { name="cffr"; version="0.3.0"; sha256="1hncf2bd8s7a77aay3iaz3k8l5wba7c89yiz1yap506ihjzbb94j"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; + cffr = derive2 { name="cffr"; version="0.4.0"; sha256="0vyg3cl1vkz40ds2birlxn5ip24gfn5i4405vvnnb6gjp9ymmcpv"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.4"; sha256="1jd66vy71b5y4ng4k5ln08cm0pa1xrzd9in1l4d1qq4cnw5qa724"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; @@ -6959,19 +6991,20 @@ in with self; { cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; cgaim = derive2 { name="cgaim"; version="1.0.0"; sha256="0bi8rmykgynkkbpkvm3n9ihl8x41n4msgz17ilwpa1xw9lf3pcj6"; depends=[cgam coneproj doParallel foreach gratia limSolve MASS Matrix mgcv osqp quadprog scam scar TruncatedNormal]; }; cgal4h = derive2 { name="cgal4h"; version="0.1.0"; sha256="0ghcwjfqlhqysnl8mgz6zp7dyqh8pvnpvphwjwk6zqi24n3nhac2"; depends=[]; }; - cgam = derive2 { name="cgam"; version="1.19"; sha256="1iw5wky4fr24jggwvink0frxy7qpgnvf08csfk240qk54spjbi81"; depends=[coneproj lme4 Matrix statmod svDialogs]; }; + cgalMeshes = derive2 { name="cgalMeshes"; version="1.0.0"; sha256="0580yf3sy7xxs629zhdl16agawfm7db7zvdi99a0sr0ab9h7nhj3"; depends=[BH data_table R6 Rcpp RcppCGAL RcppEigen rgl]; }; + cgam = derive2 { name="cgam"; version="1.20"; sha256="0mrd574zyajs46wgdyyly3vxpbpnvp5p8m4n1hsqyrjn6ba3lws4"; depends=[coneproj lme4 Matrix statmod svDialogs]; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; cglasso = derive2 { name="cglasso"; version="2.0.5"; sha256="0lmdsqk4fl9n02akm8ri4vrqjhxm0cxrbl0l2kywnvb1zckn75g3"; depends=[igraph MASS]; }; cglm = derive2 { name="cglm"; version="1.1"; sha256="1r3wrds5lbirzzqsi12prwykxa5361jb95pq7j95nlp6y8kcb94j"; depends=[data_table nleqslv Rcpp RcppArmadillo]; }; cgmanalysis = derive2 { name="cgmanalysis"; version="2.7.6"; sha256="0vs7n77p4midyfm8ng0sjanalvb9b7qgzhn6gazh51wjzczg759n"; depends=[ggplot2 lubridate parsedate pastecs pracma readr readxl XML zoo]; }; cgmquantify = derive2 { name="cgmquantify"; version="0.1.0"; sha256="11pw1layzx9a8qy7n06nyc59mi5r07krhxw6hhybbqkdglzp511w"; depends=[dplyr ggplot2 hms magrittr tidyverse]; }; - cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; }; cgrcusum = derive2 { name="cgrcusum"; version="0.1.0"; sha256="1pmni0bw7yp8alqyd88ysl858jkp926my2c5g6z31izzyih29s0z"; depends=[ggplot2 survival]; }; cgwtools = derive2 { name="cgwtools"; version="3.3"; sha256="1dl9ghwfzjrl5pd6izy4c5qyfq2s8ywnqh97y1bhwmcw2qwb4ci6"; depends=[gmp]; }; ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; chameleon = derive2 { name="chameleon"; version="0.2-3"; sha256="0a3azp0zaakpqqx0pp94hkj3vgb2apnf8gb5ga0as4i8lrn9dz8i"; depends=[clue ggplot2 umap]; }; chandwich = derive2 { name="chandwich"; version="1.1.5"; sha256="1i3gg3ib4j33i5f3a6x9k2g8d5ccbdmv2pb2bdhiwwsjy8bfmsvq"; depends=[numDeriv]; }; - changepoint = derive2 { name="changepoint"; version="2.2.3"; sha256="1hpdxz9kqgvn5059sj2pmr7bg208ba950aidy256lad5hdjz2mcj"; depends=[zoo]; }; + changeRangeR = derive2 { name="changeRangeR"; version="1.0.1"; sha256="1lqml0lran2ggq0f855517lxbyscbymn7f5zvjwak433yr8y8p95"; depends=[dplyr phylobase rangeModelMetadata raster rgeos sf sp]; }; + changepoint = derive2 { name="changepoint"; version="2.2.4"; sha256="16v4p2c9zi2w3anwf5y9snl5dy1g5aidiqz1vn2p64qhfvg6yqxc"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.1"; sha256="1jlixdrq97n6bh09jq3hamlwkqfqbmqs14kr8swx20f8fvfr3fj2"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; changepoint_influence = derive2 { name="changepoint.influence"; version="1.0.1"; sha256="03m7vyqy0qdvkrr0cgxc2g019rjkmsc0fwnzkp2gxbbhvwhs4qzd"; depends=[changepoint data_table ggplot2 gridExtra reshape]; }; changepoint_np = derive2 { name="changepoint.np"; version="1.0.5"; sha256="1kyj1z0mmbk1i71d5xxw8h3468afvwlqma659yjck3y5dszb1vn9"; depends=[changepoint Rdpack zoo]; }; @@ -6991,7 +7024,6 @@ in with self; { checkpoint = derive2 { name="checkpoint"; version="1.0.2"; sha256="1987vn13b5j914vkzwbn7q1138b0xsjs55x5b2090kjk6kc900x8"; depends=[jsonlite pkgdepends withr yaml]; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-638"; sha256="0y1kmm14f7fkxxyjvxiavzcy2bfflwp98yx7z98ib0v7dnn86vmx"; depends=[]; }; - cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; }; cheese = derive2 { name="cheese"; version="0.1.1"; sha256="1r4n9li33am0bsyl57kzg1m9g4w0pzbw6garcdp3qk7lwqxy2y26"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; chemCal = derive2 { name="chemCal"; version="0.2.3"; sha256="0f0d0ljym745scnfdx0n0jp86g4r51gylcab3h7ykpaizgpah24r"; depends=[]; }; chemmodlab = derive2 { name="chemmodlab"; version="2.0.0"; sha256="01af0j24vymxiqahwhcf4kp0x603yllvlgcxnybsi2wnzm71swk7"; depends=[caret class e1071 elasticnet KernSmooth lars MASS MSQC nnet pls pROC randomForest rpart tree]; }; @@ -7000,11 +7032,9 @@ in with self; { cherry = derive2 { name="cherry"; version="0.6-14"; sha256="03ipvd2ldzk7xsalkgcx0cyp9cp9b8qqjvz8nl0am412j3z9i5wg"; depends=[bitops hommel lpSolve]; }; cherryblossom = derive2 { name="cherryblossom"; version="0.1.0"; sha256="1fn0xi65y0w1gmyrjlh8lb2is34r2dc5bym0ynrgjv8h595nzhwp"; depends=[]; }; chess = derive2 { name="chess"; version="1.0.1"; sha256="0b0lz8r48bvksjnh385p1ni22hw1yvs6255pjbpj49ga9dwziin0"; depends=[cli magrittr purrr reticulate rsvg]; }; - chessR = derive2 { name="chessR"; version="1.5.2"; sha256="1czv5y4ybbi15b87959vri25fy31yv2l2cdd5q6p9fw291kj1qnp"; depends=[curl dplyr httr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; }; chest = derive2 { name="chest"; version="0.3.6"; sha256="12n65l4r85cr16c3p2w1krnqnxkvalrpi8xnbzw4y2m0sp42ydgl"; depends=[broom dplyr forestplot ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chicane = derive2 { name="chicane"; version="0.1.8"; sha256="0963r5jzyjihidh18ny9nqkim00bys3psdgrxhbah43bbl0kx43r"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; - chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.3"; sha256="1a58s0zph4mfmh9sdfbv7yaa20lx5gi0mca0ikzarfwxjl5knp39"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childsds = derive2 { name="childsds"; version="0.8.0"; sha256="1vv02kbw17b8zva2yc1qgi750z9yhyfv5xbig29dhyzvj8k00yvb"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; @@ -7029,7 +7059,6 @@ in with self; { choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; christmas = derive2 { name="christmas"; version="1.1.1"; sha256="0lxz71vbfqngkn4mg0c74ainww3vbzn8f4s5kmnw5bsd2mmwism7"; depends=[animation]; }; chromConverter = derive2 { name="chromConverter"; version="0.2.1"; sha256="0mpakgcqmpw0s7vcndqfmd2n2imn35nh5nkps07aj0vgd7z9ib8w"; depends=[magrittr purrr readr readxl reticulate stringr tidyr xml2]; }; - chromatographR = derive2 { name="chromatographR"; version="0.4.4"; sha256="15m74ijyh7dw4g2yigw4nf0gwbx7qlqb05pd2kzxbjckyhd449nb"; depends=[chromConverter dynamicTreeCut fastcluster lattice minpack_lm ptw pvclust scales smoother]; }; chromer = derive2 { name="chromer"; version="0.3"; sha256="08sj7x391y8jv3wc3v3blvsl501jkx3li928hb16niszx6a4w58x"; depends=[dplyr httr tibble]; }; chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; chromote = derive2 { name="chromote"; version="0.1.1"; sha256="0aa9lsnvcq25xd7hk2n33vlrvihad7943x9fda891adjvsnjg57q"; depends=[curl fastmap jsonlite later magrittr processx promises R6 rlang websocket]; }; @@ -7037,7 +7066,7 @@ in with self; { chron = derive2 { name="chron"; version="2.3-58"; sha256="1l36yy9jq6hxkg9rfbsggwhjsb33scb56di0klmw4c73rllcczq5"; depends=[]; }; chronicle = derive2 { name="chronicle"; version="0.3"; sha256="0yfrxr93fbxgpxjs1gb56pdx1kk4nn9xvy2csgl1rhzrgbl343m3"; depends=[data_table dplyr DT dygraphs ggplot2 glue knitr magrittr plotly prettydoc purrr readr rlang rmarkdown rmdformats scales skimr viridis zoo]; }; chronicler = derive2 { name="chronicler"; version="0.2.0"; sha256="0nnv8mflvd8hw8dkgqcx9kb3dwzrzfr7hrk2l5kjdzs8xj3v6g63"; depends=[clipr diffobj dplyr maybe rlang stringr tibble]; }; - chronochrt = derive2 { name="chronochrt"; version="0.1.1"; sha256="0jk9qw82nq5db3b4lzny3mmbynahs862yxgs2zliliwpzfgb8vxm"; depends=[dplyr ggplot2 magick magrittr readr rlang tibble tidyr tidyselect]; }; + chronochrt = derive2 { name="chronochrt"; version="0.1.2"; sha256="0r8aqx74c4rxacqf47hinpf5fy3lypxd5a1g7iqb1rbk1z4mkfj6"; depends=[dplyr ggplot2 magick magrittr readr rlang tibble tidyr tidyselect]; }; chronosphere = derive2 { name="chronosphere"; version="0.4.1"; sha256="1x4w4kap7cwkmrq4v6bvhlzm299i8chh4k02873ipnnqrhjxdhka"; depends=[raster sp]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; chunked = derive2 { name="chunked"; version="0.6.0"; sha256="1j16am4nzwy2ckisksl5mk8h05ala6lpdd5qrb1gwyrhli4lx45a"; depends=[DBI dplyr LaF progress rlang]; }; @@ -7053,6 +7082,7 @@ in with self; { cinaR = derive2 { name="cinaR"; version="0.2.3"; sha256="0kdf3xbhg7yhpr67fqbbwqm16fvv3dj9f7bvfqliy3xhpxpg23qi"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; }; cinaRgenesets = derive2 { name="cinaRgenesets"; version="0.1.1"; sha256="0pz3iw559d8rsxmnwd1cqcpv8qnnh9bfvc9ydzwznx8jczbldls8"; depends=[]; }; cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; + cipheR = derive2 { name="cipheR"; version="1.0.0"; sha256="01h8mh2xlz1kkwm3nbiw8lpjlkjc19x5x8dq1yxfwdkq5yjjkyaa"; depends=[]; }; cir = derive2 { name="cir"; version="2.2.1"; sha256="19xnqd13b5adwnzq7m0zgwrbs03fz11krlnkxza3kmcz0xzyd2s0"; depends=[]; }; circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; circle = derive2 { name="circle"; version="0.7.2"; sha256="0nn14ky8df8ra03sh9ds7lkcksf9lysc1981dh19pca7iqbdydkx"; depends=[cli httr jsonlite]; }; @@ -7068,7 +7098,7 @@ in with self; { cities = derive2 { name="cities"; version="0.1.0"; sha256="0cka12km9fyqjsj7yl3wpzsq9pln7yzjxdq430441hsww8rr80l7"; depends=[dplyr ggplot2 ggthemes plotly tidyr]; }; cito = derive2 { name="cito"; version="1.0.0"; sha256="1mrcnrflhkzihjzpgaw4sq6a2p56p184dz3qfk2g50m0rism2qmr"; depends=[checkmate coro torch]; }; citrus = derive2 { name="citrus"; version="1.0.2"; sha256="1pzzyppqfh3qvc1xi2947lnshv7z2c21r8fribhc1avj76j26q5y"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot stringr tibble treeClust]; }; - ciu = derive2 { name="ciu"; version="0.5.0"; sha256="01fg5awbf35qparry0z3kl60kww8rbaqgi2b81vmbl77bls0my7l"; depends=[crayon ggplot2 Rcpp]; }; + ciu = derive2 { name="ciu"; version="0.6.0"; sha256="0pqs8ivbybbrjar978bl05awgaks33nqfm7l9z68iv2sj4a9hv21"; depends=[crayon ggplot2 Rcpp]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; civis = derive2 { name="civis"; version="3.0.0"; sha256="12q96bj21832zqqbisfxmnpqw7w72v350lyf7cpjgr7cq7b51brd"; depends=[future httr jsonlite memoise]; }; cjar = derive2 { name="cjar"; version="0.1.2"; sha256="0rq9ryhp2h3p927227chzwbjn7x22h9ckkha2kclhx0jh7swf5y7"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble tidyr vctrs]; }; @@ -7106,7 +7136,7 @@ in with self; { cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.8.3"; sha256="1cwf41j4l9y5vji6zwj7j2na0xg5jfwjqgygqmpwb1gffqxak319"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; - clidatajp = derive2 { name="clidatajp"; version="0.5.0"; sha256="15nqv6b7hwsh97wjwlanfbzaiilz2lwmb2pm89vm3lsik3m3nvph"; depends=[dplyr magrittr rlang rvest stringi stringr tibble tidyr]; }; + clidatajp = derive2 { name="clidatajp"; version="0.5.1"; sha256="1s64vsnam64n1jvwc7sw5nd256gs2w69f7ywgcpq1ypa8vaw0qs4"; depends=[curl dplyr httr magrittr rlang rvest stringi stringr tibble tidyr]; }; cliff = derive2 { name="cliff"; version="0.1.2"; sha256="0d7aswvsqlyai3rxxbfy08cs4qbi9fjjls62y1p95bmnhq1b3bwf"; depends=[ellipsis processx rlang]; }; clifford = derive2 { name="clifford"; version="1.0-8"; sha256="0gi4jajng1v0a45dl5qv8v279bm4lzfbkdsqp0bd1vil2ns1934j"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; @@ -7117,7 +7147,6 @@ in with self; { climatrends = derive2 { name="climatrends"; version="0.4"; sha256="0w1qanbmannz7bmibss6s5blcx68gjl7c2r5h2n1irpdxs0s5sz3"; depends=[]; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.5.0"; sha256="15xc4cvllf6qpwa8a0lvsbivx4cricbgn0v3wc70xy69ngfa7zaj"; depends=[lpSolve]; }; - climetrics = derive2 { name="climetrics"; version="1.0-5"; sha256="0jy6npilv21hm0cwv5dmxwbz1x5lw75a14n9nbp743864z6jrz30"; depends=[raster rts sp terra xts yaImpute zoo]; }; climextRemes = derive2 { name="climextRemes"; version="0.3.0"; sha256="0c3zh64pipdq5266g8p6c6h0qdwfmigfh6s63ljqvr1ysv32k57g"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; clinDR = derive2 { name="clinDR"; version="2.3.5"; sha256="0p5pq0kpm8sfxv1a1dp2wyykp1qqbxbjz0c4f20igc25aazd7kaz"; depends=[doParallel DoseFinding dplyr foreach ggplot2 glue magrittr purrr rstan shiny tibble tidyr waiter]; }; @@ -7125,11 +7154,11 @@ in with self; { clinPK = derive2 { name="clinPK"; version="0.11.1"; sha256="1mzws5pgczdghxl2h0zgrp44in80kplnhy3gc7g4g8wssjwywbb3"; depends=[]; }; clinUtils = derive2 { name="clinUtils"; version="0.1.3"; sha256="1qv7xxcmvrsm7lldfa4az9vbwzldgg5xs1312xqhalvc4v6pi0bg"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; clinfun = derive2 { name="clinfun"; version="1.1.0"; sha256="1fca5nd36xzb50ccbwrb4xxvzhqg7s60smwr42k5z9sfywfh79y8"; depends=[mvtnorm]; }; - clinicalsignificance = derive2 { name="clinicalsignificance"; version="1.0.0"; sha256="0nkf60jgl2w4f0j8kxb7pf2xf9718lnia2sl0ihj29fnl4kmhxs1"; depends=[checkmate crayon dplyr ggplot2 insight lme4 magrittr purrr rlang tibble tidyr]; }; + clinicalsignificance = derive2 { name="clinicalsignificance"; version="1.2.0"; sha256="017myylm3hh256zqis80f3y7y44p706wzkf8klw4d0frai7mrfwv"; depends=[checkmate crayon dplyr ggplot2 insight lme4 magrittr purrr rlang tibble tidyr]; }; clinmon = derive2 { name="clinmon"; version="0.6.0"; sha256="0cd5mrirfll0zbm9k8glwdqnh4qy4dlfnsypr3xhyf6ppgm35hlv"; depends=[signal]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; clinspacy = derive2 { name="clinspacy"; version="1.0.2"; sha256="134nvkircy1a1rmsg2nszk2r8bcdmikmrx6plchdz8gxyjd6jmya"; depends=[assertthat data_table magrittr rappdirs reticulate]; }; - clintools = derive2 { name="clintools"; version="0.9.6"; sha256="0zgv8vwa3ab2zwdrj8r7rc65ajpc2av9zks5vs9q93byzrxnz0f7"; depends=[ggplot2 lme4 signal xml2]; }; + clintools = derive2 { name="clintools"; version="0.9.7"; sha256="0v74706imgk5kkya3cj14c78dxji2zgxyasfm4x7k2jda20z3fap"; depends=[ggplot2 lme4 signal xml2]; }; clipp = derive2 { name="clipp"; version="1.1.1"; sha256="1yddihmjg90j9id825lyanqpfm4i67mdgvdm53pz20p8fcq4mlzw"; depends=[]; }; clipr = derive2 { name="clipr"; version="0.8.0"; sha256="1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; @@ -7147,11 +7176,12 @@ in with self; { clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; clubSandwich = derive2 { name="clubSandwich"; version="0.5.8"; sha256="1y894n35l4lzqm15ifxjnpnh95dldsfivv4098571yqf1z4a253q"; depends=[sandwich]; }; - clue = derive2 { name="clue"; version="0.3-62"; sha256="1lhybs6rhq8zs7q15ahng7c93liiygr64i2zwg3ya6maqji3ynjp"; depends=[cluster]; }; + clue = derive2 { name="clue"; version="0.3-63"; sha256="0c402fb3r1cxd0j6ikjhssq2k22lbnsq4k7vjpgvyx4a4ly2h4yr"; depends=[cluster]; }; clusTransition = derive2 { name="clusTransition"; version="1.0"; sha256="0q5cxkb5mrygyp2zg177rwn5cgpnyqln7yjvjflb48ll3jr98342"; depends=[flexclust]; }; cluscov = derive2 { name="cluscov"; version="1.1.0"; sha256="0345v5r6b53243h5bir29v0w77pmwjqjkqfrjnk5j5r1wbh98q1w"; depends=[MASS quantreg]; }; clusrank = derive2 { name="clusrank"; version="1.0-3"; sha256="0m5yggbmp3kjh98nkmwy4k8lnd2jxp4c5gyysgvpp5zypakjc1cc"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; + clustAnalytics = derive2 { name="clustAnalytics"; version="0.5.2"; sha256="1p9417l9ccfgng616cy6rl2i3rik4i5m4frpcw5k4szrxa3rdb81"; depends=[boot dplyr fossil igraph mcclust mclust Rcpp Rdpack truncnorm]; }; clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; }; clustEff = derive2 { name="clustEff"; version="0.3.0"; sha256="1j8v0qm6mqbh08kq8jahpgg6ygab6ac22lzzpcc2h72zm7r7cacr"; depends=[cluster fda ggplot2 ggpubr qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; @@ -7185,13 +7215,14 @@ in with self; { cmaRs = derive2 { name="cmaRs"; version="0.1.2"; sha256="1s92rmb5wxll2bwmmc95z59plpxfz0qn1l5qaf95zgp1ynwzybnm"; depends=[AUC earth Matrix Rmosek ROCR Ryacas0 stringr]; }; cmaes = derive2 { name="cmaes"; version="1.0-12"; sha256="0wk8zkf585ipnxajmibip85cyz7wc5br0cph3cvnacbh7yf2zvay"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; - cmcR = derive2 { name="cmcR"; version="0.1.9"; sha256="06pw7lbp85xfnglcc86h1b4ipy1igvf43ihpqm9m67d4jc9r6acs"; depends=[assertthat dplyr ggnewscale ggplot2 imager magrittr purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; + cmbClust = derive2 { name="cmbClust"; version="0.0.1"; sha256="01yjiscnligy6wpn752sqm53xhx0qxjbfd4dc8p7c31kbzfpif2x"; depends=[]; }; + cmcR = derive2 { name="cmcR"; version="0.1.11"; sha256="15d85mjy6y68jysji0910kg9vp69iz4pbb2l4vmn501xq4md3kx3"; depends=[dplyr ggnewscale ggplot2 ggplotify imager magrittr patchwork purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.2"; sha256="0v3fassl21wdyx7s4shsib936fr41qr9hxjgcjc2f8az0ljd1p70"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; - cmfrec = derive2 { name="cmfrec"; version="3.4.3-2"; sha256="0qzbkzsgr9haf48rhi70chsxbppmq7l19q3hmggfp12rziaa8y5l"; depends=[]; }; + cmfrec = derive2 { name="cmfrec"; version="3.5.0"; sha256="1x51pfjyxyjrpzrh0aglnm8z9wa9dqdjxpzwirxw8099wf647w67"; depends=[]; }; cmhc = derive2 { name="cmhc"; version="0.2.3"; sha256="17m4kiyw7x3sz7zb446y8sxq2s6f3yyqsqmll2k9d0sccrnah5f3"; depends=[aws_s3 digest dplyr httr readr rlang stringr tibble]; }; - cml = derive2 { name="cml"; version="0.0.5"; sha256="0j1awj84b68j13f7s0bs294sx7cdn9dch0vjclsnarwzv2alavx1"; depends=[MASS vegan]; }; + cml = derive2 { name="cml"; version="0.1.0"; sha256="10qwpgs64zhizid3l7i9ryx214w0kx0121dfkjmvmf00pdb685im"; depends=[vegan]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7215,11 +7246,10 @@ in with self; { cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; }; cnum = derive2 { name="cnum"; version="0.1.3"; sha256="0iphbx5ii4ij0bi9nqdz793i4gk2164jlgz5xn8yzsayjmizhdk2"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.3"; sha256="09dq4xxpi632jb9vh96rsy2g51sn6apbccx9c8073hfsm078b4w6"; depends=[]; }; - coala = derive2 { name="coala"; version="0.7.0"; sha256="00rwjdl3nscrl7ldb9j5l12xhjg1fi8li5l9xyx9gw28ixkznl6a"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-4"; sha256="09abhcp6y98378kf018inhxpkkirch5636nskywn0p6shp2q278x"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.24"; sha256="1ya9g2i1ds2w4hxbacmql67a3hh1grycj74g6b7xb05h478ym87n"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="4.4.0"; sha256="00zggkpqvgsabddrg1cmdvwk8rx4zfdyila9qdg000x7bbbm8nix"; depends=[backports crayon ggplot2 gridExtra gtable rlang]; }; + cobalt = derive2 { name="cobalt"; version="4.4.1"; sha256="1h4z6v5k9v4fsgygbc6v20p1ld1d7f9jgygasyk40abx1rd0r8sf"; depends=[backports crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-5"; sha256="04f6a6gp11p93j2k35mbrfqgjx5qsgi3dj1085a5v5s0z6l7vbkz"; depends=[quantreg SparseM]; }; coca = derive2 { name="coca"; version="1.1.0"; sha256="1lh7q3ip1jaz5zj5zcnd5whwpjw6zcrxs6j0j8mnmjsnw2kr4m5n"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer sparcl]; }; @@ -7229,7 +7259,7 @@ in with self; { cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-4"; sha256="13z5dwfpnyyhpsbpg4xr9g5c1685jhqj90f4x4qkcykr6kykqba2"; depends=[lattice]; }; coda_base = derive2 { name="coda.base"; version="0.5.2"; sha256="0pcgjsfcgz5fj949szahkppb9rb9cba47b1galm4i6c3qp0yn18a"; depends=[jsonlite Matrix Rcpp RcppArmadillo]; }; - coda4microbiome = derive2 { name="coda4microbiome"; version="0.1.1"; sha256="0ckd20wajqj2mxz7l8w12pvc54xys0a9fg0h2qw7kjbhgx5hmi6j"; depends=[corrplot ggplot2 ggpubr glmnet plyr pROC qpdf]; }; + coda4microbiome = derive2 { name="coda4microbiome"; version="0.1.2"; sha256="1f05lnv59scq2m3jj9fajmcivnfkpnwzqdxkmxa9ik0ydsa4h5wn"; depends=[corrplot ggplot2 ggpubr glmnet plyr pROC]; }; codacore = derive2 { name="codacore"; version="0.0.4"; sha256="047klw705a4x0b93xvwd6839j30gg9jl1dgwdnkcqjiwn9jx8fb3"; depends=[gtools keras pROC R6 tensorflow]; }; codalm = derive2 { name="codalm"; version="0.1.2"; sha256="09q7i96wga55xl8wwkb4i2sisn97wd21zqpmasykpi1aamzysqki"; depends=[future future_apply SQUAREM]; }; codeCollection = derive2 { name="codeCollection"; version="0.1.2"; sha256="0jimahw008l2x4c646dwf6f5vw9xlh8rfm7l6kgj8q4iymzbr8rm"; depends=[Epi]; }; @@ -7247,7 +7277,7 @@ in with self; { codified = derive2 { name="codified"; version="0.3.0"; sha256="0a5k0zqw1dxa3v1hzh3s43zlpyzpgxnbq2rhz8kq0g8lxqlki3pc"; depends=[checkmate dplyr kableExtra knitr rlang tibble tidyr]; }; codingMatrices = derive2 { name="codingMatrices"; version="0.3.4"; sha256="05ndy51wpqyk1b3nq95zn6lxgzg5hzqbr2w7b2v8ar291sxvc4g7"; depends=[fractional Matrix]; }; codyn = derive2 { name="codyn"; version="2.0.5"; sha256="1iqlh3ydnqi7s2b3fa2zgb05j763qgxriys4piawwmgrdrvd3d9q"; depends=[assertthat permute vegan]; }; - coefa = derive2 { name="coefa"; version="1.0.1"; sha256="1zi5x3wpdjbf22p50aax8h22hw96knwp9s3fzaz2v5p6j0b13dnj"; depends=[openxlsx psych purrr]; }; + coefa = derive2 { name="coefa"; version="1.0.2"; sha256="0qb78kbr7z307165j7q17bm1p9aq6p4iy2j1sbpqks4bvkih9drs"; depends=[openxlsx psych purrr]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.7"; sha256="0li1js501sa8m0ba76ymn4lz5y4np7kf96gnxz9kypg50kd58yis"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.8"; sha256="0qxa57sm5hncmd4mxab1c7hk34n2s5fsn51ck6ik2ciynhgcqxvn"; depends=[dplyr dygraphs ggplot2 magrittr plotly plyr purrr reshape2 tibble useful]; }; coenocliner = derive2 { name="coenocliner"; version="0.2-3"; sha256="07hik9y84nj1l83spcp1hq9lj960zsg3v0i8rk0xfv25grrakp85"; depends=[]; }; @@ -7260,7 +7290,7 @@ in with self; { cognitoR = derive2 { name="cognitoR"; version="1.0.2"; sha256="1pz4wk7vdc1nhm76kz912hyyc9c408qsldfr9dygqvran4xvqm9g"; depends=[base64enc config dplyr httr jsonlite paws shiny shinyjs yaml]; }; cohortBuilder = derive2 { name="cohortBuilder"; version="0.1"; sha256="1j6ksdynss3wmizcqb2in7fpcllfpsd4xw0xklcn9r94cdnhgrz4"; depends=[dplyr formatR ggplot2 glue jsonlite magrittr purrr R6 rlang tidyr yaml]; }; cohorts = derive2 { name="cohorts"; version="1.0.1"; sha256="0g3xllmk5n4s2w10a2460v735bsc2xnkxgcr9zkvl8sz8rczrs2n"; depends=[data_table dplyr dtplyr magrittr tibble tidyr zoo]; }; - cohorttools = derive2 { name="cohorttools"; version="0.1.4"; sha256="1zpf3qgzkn34wc36r89ymzfx4fvlgl7x1yiwdwzzd20xv3nx2b5h"; depends=[cmprsk DiagrammeR DiagrammeRsvg Epi ggplot2 rsvg survival]; }; + cohorttools = derive2 { name="cohorttools"; version="0.1.6"; sha256="17gz4887vhkk0qr5mcv0vcfaxiws1pk1fdd4y8wqbl57ikn5i9vs"; depends=[cmprsk DiagrammeR DiagrammeRsvg Epi ggplot2 mgcv rsvg survival]; }; coil = derive2 { name="coil"; version="1.2.3"; sha256="023sn4waf8wb99ryxf0biag8rfg3j3sslf8fw7d00llzci8px5zj"; depends=[ape aphid seqinr]; }; coin = derive2 { name="coin"; version="1.4-2"; sha256="1cpv7jx840inzg98bkhrb5yscx0gpag6br237r5qpnc2gbrd2ikm"; depends=[libcoin matrixStats modeltools multcomp mvtnorm survival]; }; coinmarketcapr = derive2 { name="coinmarketcapr"; version="0.4"; sha256="1h95fm32w03gxjka71n41lxkinfwpal4dl6hmhfdph8wywn7y50j"; depends=[cli crayon curl data_table ggplot2 jsonlite]; }; @@ -7310,6 +7340,7 @@ in with self; { combinIT = derive2 { name="combinIT"; version="2.0.0"; sha256="1l2ypnrm2qi1z10c2qyyaqqcjgk3mgsh80b3j9zrjwq9zdakrhi5"; depends=[mvtnorm Rcpp RcppArmadillo]; }; combinat = derive2 { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; combinationpvalues = derive2 { name="combinationpvalues"; version="0.1.4"; sha256="0n5dhgss8mrxshfixpc10g1p7l06hcn3fbk7l9sp92ap64kalz6c"; depends=[chi dplyr spatstat_utils]; }; + combinatorics = derive2 { name="combinatorics"; version="0.1.0"; sha256="02v0fz6qw08v4krnaj6ph76d6n2al12c48vl81ajj5hvlnjwldhg"; depends=[]; }; combinedevents = derive2 { name="combinedevents"; version="0.1.1"; sha256="0fwsxn2ziapax1wy9k57n76z3nxqb22vfbp5r3y6xg3aparxdxpz"; depends=[lubridate magrittr rlang stringr]; }; combiroc = derive2 { name="combiroc"; version="0.2.3"; sha256="0plg8w96jr5lnishjmcxa1a3nw14jyfaybgr0vcimhx32zv6b14c"; depends=[devtools dplyr ggplot2 gtools moments pROC stringr tidyr]; }; combiter = derive2 { name="combiter"; version="1.0.3"; sha256="11pcvrpbvkzkjwks2z6ww7s9d5fkh8zl0jw52a5ya3y1wkqcs3n6"; depends=[iterators itertools Rcpp]; }; @@ -7317,6 +7348,7 @@ in with self; { cometExactTest = derive2 { name="cometExactTest"; version="0.1.5"; sha256="0ar9axm9cd1wd937xcmsmd7xqilnfyab8gsrpkiqpc3fjh86qyrp"; depends=[dplyr]; }; cometr = derive2 { name="cometr"; version="0.2.0"; sha256="0fbg1lfw0q4lfk4svflfwjfmwxbrdvmrvxry90xp39i7g8zd2ahd"; depends=[callr httr jsonlite R_utils R6 yaml]; }; comf = derive2 { name="comf"; version="0.1.11"; sha256="17hby9qah3bd4p3rfhd1lf3yaz5qxxd4p5aaq1ql7jdixb9p51q0"; depends=[plyr reshape]; }; + commafree = derive2 { name="commafree"; version="0.1.0"; sha256="0dn6ps6nvinwaxc8js5bq2kg78nzrf7ijbi77c7jan8z50d19m0p"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; common = derive2 { name="common"; version="1.0.5"; sha256="06xjpbrpmzkphwxr2z8di8qig9qf0d2g9jg7142nvwmm2mf05iwg"; depends=[this_path]; }; commonmark = derive2 { name="commonmark"; version="1.8.1"; sha256="1gjwpmcxv15y1jg9f7kzp49s68kj1skjsh5g264f9lp37l4wpbcn"; depends=[]; }; @@ -7329,7 +7361,7 @@ in with self; { compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.2"; sha256="0r3d03yj5fjzfc6awc16x9420366dcy3nhvibjlrn0m10il714pc"; depends=[]; }; compareDF = derive2 { name="compareDF"; version="2.3.5"; sha256="1sq30ndlidpmyvpqkzhq5shy52i22p80lcfar3p8dqymndg1bgyl"; depends=[data_table dplyr htmlTable openxlsx rlang stringr tibble tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="4.5.1"; sha256="0ll770lj2j6nnjdpkij1wadd2nqppkdjcfglfx13kk5r5ldmfyq1"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; + compareGroups = derive2 { name="compareGroups"; version="4.6.0"; sha256="0w44dk3ba9dq68kl2y5665h6l8j0w59mx70rwi58c77w3bqz0jry"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; compareMCMCs = derive2 { name="compareMCMCs"; version="0.5.0"; sha256="0g3fzazfs6f8ni251ilzk0q65hvgfhglly7v4rmkl4jwhzvsz1yr"; depends=[coda ggplot2 nimble R6 reshape2 xtable]; }; comparer = derive2 { name="comparer"; version="0.2.2"; sha256="1rhx9an7qi9r3cv2zpnb9qw0byg06zabg99v51mal218080r6rvm"; depends=[R6]; }; comparison = derive2 { name="comparison"; version="1.0-5"; sha256="0vg8s9j2xjzv7bidd59givxgcqzhdd29q84dj4ww2a6vkmq269r7"; depends=[isotone]; }; @@ -7339,13 +7371,13 @@ in with self; { competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.7.1"; sha256="0s8n62hssx0qkznf0x6gw9yzlngiqgjw34k9wyhlh5iiwq4fyc3x"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; compicc = derive2 { name="compicc"; version="0.1.0"; sha256="1j2yy4dw3g96vpm3dq81dixhfzm3nqqawphmmg9hcsqir5f6xg9a"; depends=[irr]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; - complexNet = derive2 { name="complexNet"; version="0.1.0"; sha256="0jswxr16j7irjbfc5p5vgdaksh3gs8gyx3cwbs0acrpyykxpi5k7"; depends=[]; }; + complexNet = derive2 { name="complexNet"; version="0.2.0"; sha256="199zxqsbasd1j598srpb10y8mjw2l4plra1121i9sdsf40bvd7aw"; depends=[]; }; complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.7.0"; sha256="0dvkc5y53041agkjz3rl898hkq686pxzr6flf2qx1g3jbza3pk1y"; depends=[boot ggplot2 robustbase scales]; }; compositions = derive2 { name="compositions"; version="2.0-4"; sha256="1bqg0qqzsf92q0jb7hdjycr54bwv8rk7ajhvxgch5yslyqxpm73v"; depends=[bayesm MASS robustbase tensorA]; }; composits = derive2 { name="composits"; version="0.1.1"; sha256="0njz6yn3dxi5czzmp93lcz2xr5gphiii857s5jggygq0xdszlx86"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; }; - compound_Cox = derive2 { name="compound.Cox"; version="3.21"; sha256="0n0g56698w8mhlhizx8ji0q0r3qjmsjpyv5pfgy4xp4k3hi518l5"; depends=[numDeriv survival]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.23"; sha256="1iqhqwnrvvrzk0jyqgpsq7aa1pglmqsgxinxpv20588nhvjkxn60"; depends=[MASS numDeriv survival]; }; comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; @@ -7353,7 +7385,6 @@ in with self; { con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; - conText = derive2 { name="conText"; version="1.1.0"; sha256="04zqahx01rqpa6wm4krnr7vfafcxgqblrd911qw7pfwvmjl2w92s"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec tidyr]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concatipede = derive2 { name="concatipede"; version="1.0.1"; sha256="1cmc0pcy9di1bxzj4kgbnvv1avd7xd6jzk43kni7fc5fkcq2jj3x"; depends=[ape dplyr igraph magrittr qualV readxl stringdist stringr tibble writexl]; }; concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; @@ -7366,9 +7397,8 @@ in with self; { cond = derive2 { name="cond"; version="1.2-3.1"; sha256="1j0gf28mg2j6ahs83nk662bix1lb2c9184vn8sblw433zxqaa2ny"; depends=[statmod survival]; }; condGEE = derive2 { name="condGEE"; version="0.2.0"; sha256="09vbwpn4i37cn8gs9pr62mvzzbqrfm756370zas97kjbnmx8glbj"; depends=[numDeriv rootSolve]; }; condMVNorm = derive2 { name="condMVNorm"; version="2020.1"; sha256="115pxnff2ckdxx0avbs0hfdhh1sljiz1y6h7ggd5hidrxd3559m4"; depends=[mvtnorm]; }; - condSURV = derive2 { name="condSURV"; version="2.0.2"; sha256="1zw79rll44dx5vysfixfp684gf8c3c37xazwgrfzjbq54i3jwmir"; depends=[doParallel doRNG foreach KernSmooth np survival]; }; condTruncMVN = derive2 { name="condTruncMVN"; version="0.0.2"; sha256="1dicfa82yg8k83lnb5c17jnqwgkazpb8404kfzdf6ikmndwjn0zg"; depends=[condMVNorm matrixNormal tmvmixnorm tmvtnorm truncnorm]; }; - condformat = derive2 { name="condformat"; version="0.9.0"; sha256="151rpnrnbj5ilckf99m6k3c26r1sr94496kws9w91faxilvl180b"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr magrittr openxlsx rlang rmarkdown scales tibble tidyselect]; }; + condformat = derive2 { name="condformat"; version="0.10.0"; sha256="1iyvghcz5x9kg4jbh4fl97rcwcvi8rcp6rngvgqiyzdg8sbfxkr6"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr magrittr openxlsx rlang rmarkdown scales tibble tidyselect]; }; condir = derive2 { name="condir"; version="0.1.3"; sha256="09b0nfdi39mq0531bjzmk8wnmzkyvcd2q5fyk8lnam3n6fz3dg2y"; depends=[BayesFactor effsize knitr psych shiny xtable]; }; conditionz = derive2 { name="conditionz"; version="0.1.0"; sha256="0ijnsg6n3p3y8y9il012xg5if57hdzvrgxjcykfrrlil4m7ixn6c"; depends=[R6 uuid]; }; condmixt = derive2 { name="condmixt"; version="1.1"; sha256="1x6n3ylaa9ywvz7v63i2pvd2lxm95wq19xy741g9hy73ld7hd7zn"; depends=[evd]; }; @@ -7393,7 +7423,7 @@ in with self; { conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.1.1"; sha256="1xc879ygv9avamy29a6rdfb6pknaz82f3k6392c8a90sgfn3bx3d"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; conformalbayes = derive2 { name="conformalbayes"; version="0.1.2"; sha256="0pl1ajix5v3zckny5angk1rqnalln4agf65yrdva210zl6wp7fzm"; depends=[cli loo matrixStats rstantools]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; - confreq = derive2 { name="confreq"; version="1.6.0-3"; sha256="0lijjj355y5ihf3djh9swfk0x0xa4307y6a1i864xp2jh2v79hs9"; depends=[gmp vcd]; }; + confreq = derive2 { name="confreq"; version="1.6.1-1"; sha256="05bwsj4xa3k7gngnf3ni8j0qw7yd7iycqkarpxm60dy8ayy68bs8"; depends=[gmp vcd]; }; congress = derive2 { name="congress"; version="0.0.1"; sha256="0fkdffapylsqd1xwxrq6jxcas2amaz9xhap6lbyy6grw0ww7phr7"; depends=[cli dplyr glue httr2 purrr rlang stringr tibble tidyr]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; @@ -7413,14 +7443,14 @@ in with self; { consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; - contFracR = derive2 { name="contFracR"; version="1.0"; sha256="115gx38lqf2059fr76xyms2kzjqkg6g7inmfdh7a0c9qn4xjhk3q"; depends=[gmp go2bigq Rmpfr]; }; + contFracR = derive2 { name="contFracR"; version="1.2"; sha256="1pb1xbmgdpg1svxvhq3jx5dmxszivwzmhd18hmg4rlhym454sh1b"; depends=[gmp go2bigq Rmpfr]; }; contTimeCausal = derive2 { name="contTimeCausal"; version="1.1"; sha256="0r2mg0b65xk020v0im2nzfq9644nx0ns2vddiybwz3x5c7z1bpvg"; depends=[dplyr survival zoo]; }; - contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; contactdata = derive2 { name="contactdata"; version="0.2.0"; sha256="1hcibqkfisv28d38ymgvmkkbs4jl3lbp2safyd5abf185043263d"; depends=[]; }; - contentid = derive2 { name="contentid"; version="0.0.15"; sha256="0r5lrq82vfv698g8md8kdhl83gi8rx5hrhk2qddykxlxk4krzagi"; depends=[curl fs httr openssl]; }; + container = derive2 { name="container"; version="1.0.4"; sha256="0vpha9s5d8mxqdzmbfy92qz78b6gfibwgp1ijq70c5vqs2clkzb1"; depends=[data_table R6]; }; + contentid = derive2 { name="contentid"; version="0.0.16"; sha256="17zb7fpnr1a2ixanxmgk9awwmb3njw1lk97s3a0w6cvd7dwz8iz2"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; - contingency = derive2 { name="contingency"; version="0.0.6"; sha256="0bwvrwsa41s24j612w4jyhlfp2r6qa37ljsb3lxx27mkd9r0286d"; depends=[rje]; }; - contingencytables = derive2 { name="contingencytables"; version="1.0.2"; sha256="09biny56xvp9bmhm53vcw6985hk2b4bbzyj8y25wzg3idznxihlf"; depends=[boot MASS]; }; + contingency = derive2 { name="contingency"; version="0.0.10"; sha256="155pzw1ifm1c4pjd5wxj9lb89a6wc9l5g1v2rhq8rfswzds89gjv"; depends=[rje]; }; + contingencytables = derive2 { name="contingencytables"; version="1.0.4"; sha256="18j7iaficb0lhl6g83cgr346a1wq19s20nmiclrxryyk88pswzak"; depends=[boot MASS]; }; contourPlot = derive2 { name="contourPlot"; version="0.2.0"; sha256="0bjwq3p57d6hadln8vwjkh7c9sbb466h3zcq9kpx7kd31z6x8gnz"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.24.2"; sha256="1k7gdjmzgsw3rm90k9gpzlg4b8ma7vxamdj106b6r40q1ypaqha5"; depends=[nlme rms sandwich]; }; @@ -7438,6 +7468,7 @@ in with self; { convey = derive2 { name="convey"; version="0.2.5"; sha256="0vji97sip7p2xpbd3mhx2a6aw46zjky561rypa3hb8xpag16fna5"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.7"; sha256="1pmiirigjdkrb3pzqcw6qlh6418z384mvaxqw5mrcm1gxzrqp649"; depends=[ellipse fields MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; + cookies = derive2 { name="cookies"; version="0.2.0"; sha256="14rz7wfv3pfgj7j6i11kawavz161k7kdpz0lzjyy756mbrd5cpky"; depends=[cli clock glue htmltools httpuv jsonlite purrr rlang shiny vctrs]; }; cooltools = derive2 { name="cooltools"; version="2.0"; sha256="1ak4kkmi0m38rmwk3d4r5y9224awhx65gbb2i2nhw4cfhnzdyg0k"; depends=[bit64 celestial cubature data_table jpeg MASS plotrix png pracma raster Rcpp sp]; }; coop = derive2 { name="coop"; version="0.6-3"; sha256="0ww99ssgawsgn6rqy838wbx6iirzdrzyxirvz084ih8j50blx420"; depends=[]; }; coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; @@ -7448,15 +7479,15 @@ in with self; { coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; copre = derive2 { name="copre"; version="0.1.0"; sha256="1mvh2fyxsc8v2cwlppsnx29dn5s1vg5pg22cd5acidsnk5lvbr86"; depends=[abind BH dirichletprocess ggplot2 pracma Rcpp RcppArmadillo]; }; cops = derive2 { name="cops"; version="1.2-0"; sha256="0bw13yhvnq5qw9rgmvf7w3kmygbpx58168rm546x8v155ywccvfx"; depends=[cmaes cordillera crs dfoptim GenSA MASS minqa NlcOptim nloptr pso rgenoud Rsolnp scatterplot3d smacof subplex]; }; - copula = derive2 { name="copula"; version="1.1-0"; sha256="096rfnm14lp2pldqdphhf1v8bqv7ihxi901qinhv4kakari6xdws"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; + copula = derive2 { name="copula"; version="1.1-1"; sha256="1qz1hpqn7nsajsfvnyn4l1zqzkvmv1174dbb7cjps0q9dsvalx2l"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; }; copulaSim = derive2 { name="copulaSim"; version="0.0.1"; sha256="12mnh0gpxz046kywki9jr6gj574kfwcs1gczzr7zfkvkm5qgga65"; depends=[dplyr magrittr mvtnorm rlang tibble]; }; copulaboost = derive2 { name="copulaboost"; version="0.1.0"; sha256="12mx048mxglaxdkskp9b31rkmhsyfay8m62134nh9k04iqb8zjap"; depends=[rvinecopulib]; }; copulaedas = derive2 { name="copulaedas"; version="1.4.3"; sha256="01wp8jnz7kndknj7lh9ia7mm41k1vbaksalyy9v19bb77yhgzmba"; depends=[copula mvtnorm truncnorm vines]; }; copulareg = derive2 { name="copulareg"; version="0.1.0"; sha256="0wn40rvh2dg60h45qbzy7nwcy2rhrnxf1rykl1ycs75mrimaayn9"; depends=[rvinecopulib]; }; - copyseparator = derive2 { name="copyseparator"; version="1.1.0"; sha256="0v0z5fnbvhvpbx9gr6wnq22ijjyvlnnh7q4nbvffh7wdsnwijmi8"; depends=[ape beepr Biostrings DECIPHER kmer seqinr stringr]; }; + copyseparator = derive2 { name="copyseparator"; version="1.2.0"; sha256="0dywnrqjb6x7v8icx117vsjb6zzb0brmmz1xwdc8a26lgcqmbvgv"; depends=[ape beepr Biostrings DECIPHER doParallel foreach kmer seqinr stringr]; }; corHMM = derive2 { name="corHMM"; version="2.8"; sha256="1pxn5vx5pxrys5ql393bibfij1922pbm2v5vr0h5gcdjym0ndr6n"; depends=[ape corpcor expm GenSA igraph MASS nloptr nnet numDeriv phangorn phytools Rmpfr viridis]; }; - corTESTsrd = derive2 { name="corTESTsrd"; version="0.9-2"; sha256="18mrcdqw853v2x57kg4zfpygnsxvcpc2sh61lrg3higdkb8svcpd"; depends=[]; }; + corTESTsrd = derive2 { name="corTESTsrd"; version="1.0-0"; sha256="0as1xnc38jm1hay2dqib6y8mas9ip1qz55d1bcnpkaxdfaydzpcw"; depends=[]; }; corTest = derive2 { name="corTest"; version="1.0.7"; sha256="1gip8rxvbhrckwmjwmxbmycndg4jrl75x8qda9l35znfv9r7p0nq"; depends=[Biobase clusterGeneration ggplot2 igraph MASS Matrix]; }; cora = derive2 { name="cora"; version="0.1.0"; sha256="0mx7dn05js8hqr3xgrbp2kv25y6qjlm86y6asy17hwbbvbsmama9"; depends=[]; }; corazon = derive2 { name="corazon"; version="0.1.0"; sha256="1advzmbmnpq18ym2k8rcxhsdzfscl68jss8wbqcir68951x2aqi3"; depends=[htmltools]; }; @@ -7470,7 +7501,7 @@ in with self; { corels = derive2 { name="corels"; version="0.0.4"; sha256="1ygbvhnz304y4y708ygr4x6kbwv7bfpjd5hhcrcc6lma59h7arfn"; depends=[Rcpp]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; - corncob = derive2 { name="corncob"; version="0.3.0"; sha256="1ahlhc3vjqiw87xk03ws4ii295gimjwxzs6lk9nz94qyc4hq200h"; depends=[detectseparation dplyr ggplot2 magrittr numDeriv optimr phyloseq scales trust VGAM]; }; + corncob = derive2 { name="corncob"; version="0.3.1"; sha256="0y1iw8kdd8smw2j590s4ndnzihh3g9hlq49dcw38zcf7jqydjw28"; depends=[detectseparation dplyr ggplot2 magrittr numDeriv optimr phyloseq scales trust VGAM]; }; cornet = derive2 { name="cornet"; version="0.0.6"; sha256="1psvsc0w5nr7fd83w6wk0q6y8cz2kjjv6slkihghavp6azrhx45k"; depends=[glmnet palasso]; }; coro = derive2 { name="coro"; version="1.0.3"; sha256="0wvxdpdh3xrskz5s5wfkva856x849knx1jigbf0ff6s6n6qjjxsf"; depends=[rlang]; }; coroICA = derive2 { name="coroICA"; version="1.0.2"; sha256="0pcz2256liczrn2gik8b5331rgzlxjrm7rzn1ialhifkiinifnva"; depends=[MASS]; }; @@ -7508,7 +7539,7 @@ in with self; { cosmoFns = derive2 { name="cosmoFns"; version="1.1-1"; sha256="0py0wmdpxk8ldq1wbwg4x1hxkjblar83x3ya30n4377d4lbc3xb7"; depends=[]; }; costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; }; costsensitive = derive2 { name="costsensitive"; version="0.1.2.10"; sha256="192q55123yzcjjh4047ppxa3h7gk9afqnvm1nlhzs4ccqz71g411"; depends=[]; }; - cotram = derive2 { name="cotram"; version="0.4-1"; sha256="1myfyx1bp50jywccns65hkxd2vs2zr0jmwj4i6h986n2zs6vdy60"; depends=[alabama basefun Matrix mlt survival tram variables]; }; + cotram = derive2 { name="cotram"; version="0.4-2"; sha256="0qgbckdjp53xd40b83xbnadgn375lmm69hvilmc4ka9h5drj2igb"; depends=[alabama basefun Matrix mlt survival tram variables]; }; cotrend = derive2 { name="cotrend"; version="1.0.2"; sha256="17h67vnpnlv11bf3ka5mlnah9bizxjhvicsvbygy91dqbhjhj9wb"; depends=[xts]; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; countHMM = derive2 { name="countHMM"; version="0.1.0"; sha256="12z0nz7in2msb5wa5yyjxx19ih8psw06m7xwlapvjksslippp6gs"; depends=[]; }; @@ -7572,9 +7603,9 @@ in with self; { cplm = derive2 { name="cplm"; version="0.7-10"; sha256="0mqjk10265hq9bc5ihmgbx1l8fzay1gpdlvx3pirqmvr3w1kwlxk"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; - cpop = derive2 { name="cpop"; version="1.0.3"; sha256="1vyjfxd9j5k1ya4bzi3gsdy34pvgi0y1a8h4qgr24bc661s48c66"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; + cpop = derive2 { name="cpop"; version="1.0.6"; sha256="0f7rxyh8m6w45cja02mip91p72bjlygrc0rdggbls50l63w1qczj"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; cpp11 = derive2 { name="cpp11"; version="0.4.3"; sha256="1wcq4lq7xa62xn6zsg6r8nf6vdlvnlwxgfqndb7vnvd8f54hx9pi"; depends=[]; }; - cppRouting = derive2 { name="cppRouting"; version="2.0"; sha256="0yfiyg1clnl85lk5ah8dcchv71drk6r093vpl82xnczyan5z94sr"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; + cppRouting = derive2 { name="cppRouting"; version="3.1"; sha256="1mhp6k2kwlhyrswlxi9f0f6ndvm5968ljp3k97c2m2sfbxaablxy"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; cppcheckR = derive2 { name="cppcheckR"; version="1.0.0"; sha256="1f3b8gadpiyxwxp34pd3i7s715dkm23427fp86vvnqvy9schg3ga"; depends=[htmlwidgets rmarkdown rstudioapi shiny V8 xml2]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; @@ -7606,13 +7637,12 @@ in with self; { credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; crestr = derive2 { name="crestr"; version="1.2.0"; sha256="1dr2xzr72cm0i7ldgx0kf96r0q1qa18fq6zivck1qd1gwy22iiq9"; depends=[clipr DBI openxlsx plot3D plyr raster rgdal rgeos RPostgres RSQLite scales sp stringr viridis]; }; - crfsuite = derive2 { name="crfsuite"; version="0.4"; sha256="0arxbszaf1y8cqgzbq9a5l58n3c3rhjfp78lnhdxg95cdmdzhcfd"; depends=[data_table Rcpp]; }; + crfsuite = derive2 { name="crfsuite"; version="0.4.1"; sha256="0vm4gpyb9qxlj0xixnmjs8hv3xi3ydzd8dbymk7f78nafdvqwkxy"; depends=[data_table Rcpp]; }; cricketdata = derive2 { name="cricketdata"; version="0.2.1"; sha256="1w9bikx06brq5d02nmqljdx8yhxf8gqlkwr1xkg10zjiclv6kn0r"; depends=[dplyr janitor lubridate magrittr progress readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; crimedata = derive2 { name="crimedata"; version="0.3.1"; sha256="16xccfh64qza617d7k9swahchij57skh8wwnj7gxlpasknx11wwf"; depends=[digest dplyr httr purrr rlang sf stringr]; }; - crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; - crimeutils = derive2 { name="crimeutils"; version="0.3.0"; sha256="1g7na36k1na7bsq8xqi01ja2fpb09r2davpi56jn5k1lih93kp8k"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales tidyr]; }; + crimeutils = derive2 { name="crimeutils"; version="0.5.1"; sha256="0jsh2b1kv8r9x8sx1s2x6dpc8jyfnjsinycqb5wck5jcsswswgd6"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales stringr tidyr]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.6"; sha256="1h9153iv55qkx9hyf3gs118m99mkzj5mbj6i3jg58chfp0m6jx78"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; criticality = derive2 { name="criticality"; version="0.9.2"; sha256="0177dx8y93gg37244615y17lidk7hmji5k1dlrm3670flfnigf28"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; @@ -7627,9 +7657,9 @@ in with self; { crone = derive2 { name="crone"; version="0.1.1"; sha256="03qznxml940rl3kfxy4jkg9nsx9ss0gf2ck0ry000xglw6rm2s42"; depends=[]; }; cronologia = derive2 { name="cronologia"; version="0.2.0"; sha256="143wc9i9d99cybnjzg4dj7jn7sv3cc4bq3hh6mp50j9hwxnr1xhh"; depends=[glue htmltools]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; - cropDemand = derive2 { name="cropDemand"; version="1.0.1"; sha256="0h4blvddk2ma3dm1k9r8gl54fg384r214hsx31w1qndwcj7gfpbh"; depends=[dplyr ggplot2 ncdf4 raster rgdal tidyr]; }; - cropZoning = derive2 { name="cropZoning"; version="1.0.1"; sha256="19082p5c322m684fkjcxa1bcmk3vzga2x75lid9zrsrh6knrqsbz"; depends=[ggplot2 ncdf4 raster rgdal tidyr]; }; - cropcircles = derive2 { name="cropcircles"; version="0.1.0"; sha256="1y4bnavz8bkp9b3yxnqzfai4hsn8cag4walkwa0vi5892gma5az5"; depends=[glue magick purrr]; }; + cropDemand = derive2 { name="cropDemand"; version="1.0.2"; sha256="0fffrwwk91gzhb2gn8m0nlnv3gmhdv2srzjblysgkh4bnqmrjvq2"; depends=[dplyr ggplot2 ncdf4 raster rgdal tidyr]; }; + cropZoning = derive2 { name="cropZoning"; version="1.0.2"; sha256="134spdw7qfp0f7xsjyz35xfmabqdbx37z8isf5mfg6q8rqnjhc9y"; depends=[ggplot2 ncdf4 raster rgdal tidyr]; }; + cropcircles = derive2 { name="cropcircles"; version="0.1.1"; sha256="1as2znv307mzsnq4rh9zfi3g7jff77dgsbn3hp47qm97jznvhgkg"; depends=[glue magick purrr]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; cropgrowdays = derive2 { name="cropgrowdays"; version="0.1.1"; sha256="0jgdfhywnlsz2mxb4skkrxf9fb55qyidd6y6nhb9324jm8d3xl0a"; depends=[dplyr httr lubridate magrittr purrr purrrlyr tibble]; }; crops = derive2 { name="crops"; version="1.0.3"; sha256="0c1xvfnr4dh720x0i3f6nvmzgv8zbs7cvp8vfa341yb92pz4d6s0"; depends=[cowplot ggplot2 magrittr memoise Rdpack reshape sets tibble tidyverse]; }; @@ -7639,7 +7669,7 @@ in with self; { crossrun = derive2 { name="crossrun"; version="0.1.1"; sha256="1v2khjb77g63ls6s15z9hy81z4hyf89g58jxjl94jrkznq1c4fa4"; depends=[Rmpfr]; }; crosstable = derive2 { name="crosstable"; version="0.5.0"; sha256="0gaxg4y9fpx9h1yhay449mnwpl2lpfa1cvkg9d83ddgdg7n8hkss"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr tidyselect]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; - crosstalkr = derive2 { name="crosstalkr"; version="0.8.0"; sha256="07wimbwm521l88xcidn78gxl4hwfksd5xxvkydzy372ybqqi5aqk"; depends=[doParallel dplyr EnsDb_Hsapiens_v79 ensembldb foreach ggplot2 igraph magrittr Matrix readr rlang STRINGdb stringr tibble tidyr withr]; }; + crosstalkr = derive2 { name="crosstalkr"; version="0.9.0"; sha256="0zydsyi0banjwkk4q1b231f1smww3xwmxfm5ibj2az41ppj39m2j"; depends=[doParallel dplyr EnsDb_Hsapiens_v79 ensembldb foreach ggplot2 igraph magrittr Matrix readr rlang STRINGdb stringr tibble tidyr withr]; }; crossurr = derive2 { name="crossurr"; version="1.0.6"; sha256="16fq6hdfc6nsdijj63fji3bn3hp40m350qjxhf8a3xs5j86vf43j"; depends=[dplyr gbm glmnet glue pbapply purrr ranger RCAL rlang SIS SuperLearner tibble tidyr]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.0-2"; sha256="0gwlpfqk3jsamkdx0sjvn4wmmcrdicgparks298hvi4gjlibp7mc"; depends=[changepoint FDRSeg stepR wbs]; }; @@ -7659,7 +7689,7 @@ in with self; { crsuggest = derive2 { name="crsuggest"; version="0.4"; sha256="044llamxlrva5va39yzpvsmdjqn56ij7jjll73mmjg7ka0rqc5dj"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="1.3"; sha256="0b8y12wb5kjylr8b4a2iarb5rpw1ydinw3lxp2ssq91pidyn2n40"; depends=[curl httpcode jsonlite mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.30.0"; sha256="0ysk4hpymkby80j8snyziqigsr4nda8zm3b8frxmvk42psy7m7hh"; depends=[abind crayon curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.30.1"; sha256="1qq9qddabq3x5kznxi6c9bm6jnr43559rmfdsp4xwqhgqpffrcfy"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cry = derive2 { name="cry"; version="0.5.1"; sha256="0n1yyjkqj0kqs53g27chl7lhk07f7aj81jwyvaxfmfkp03xzjj0d"; depends=[ggplot2 zoo]; }; @@ -7670,6 +7700,7 @@ in with self; { csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; csci = derive2 { name="csci"; version="0.9.3"; sha256="00s1gx5h141w1vjw8j3k7bn71c4dy80m6wakd1c1z7rmx1jbfp6m"; depends=[exactci]; }; + csdata = derive2 { name="csdata"; version="2022.11.22"; sha256="0gcjdkhbfg3dwivk0w23rdrjcq5vsa96x8l1fwjr86q4h4dyl8lw"; depends=[data_table]; }; cshapes = derive2 { name="cshapes"; version="2.0"; sha256="0c3q85whvp28zlm4k1570kwc5qvl2fmaszx9dpmfcdqv6m19f9ks"; depends=[rmapshaper sf sp]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; csodata = derive2 { name="csodata"; version="1.3.0"; sha256="11y3gr7b5m0zh3vbl4izy454mrcxj144vfvafxlxgp2aplzim3s8"; depends=[dplyr httr jsonlite lubridate R_cache reshape2 rjstat sf]; }; @@ -7678,36 +7709,37 @@ in with self; { csppData = derive2 { name="csppData"; version="0.2.61"; sha256="1q9a11v512dc96lrrd03w06s8x6c1a0j4z5x8qvq48f4q7k30l1r"; depends=[]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; + cstime = derive2 { name="cstime"; version="2022.11.22"; sha256="12nammfv9abf888zkhg3ng59r1v2pmxk9363p97mv8ssbjiil46x"; depends=[data_table dplyr magrittr purrr stringr]; }; csurvey = derive2 { name="csurvey"; version="1.4"; sha256="0d005vyz2q06xp07gssxxjwmi0m4kal839wsghqg5mldvi5qn2g4"; depends=[cgam coneproj dplyr MASS Matrix purrr survey tidyselect]; }; + csutil = derive2 { name="csutil"; version="2022.11.24"; sha256="0wa7isv73f7hn5s58w0wrbfb91i6j01vsy3n5iryj19wjw9a34cq"; depends=[data_table ggplot2 magrittr]; }; csv = derive2 { name="csv"; version="0.6.2"; sha256="1mynaia16jm28qi597xg7kf4w85vsxg5p83xbcbbr9di49vxqlr8"; depends=[data_table stringi]; }; csvread = derive2 { name="csvread"; version="1.2.1"; sha256="1r9jvf7nbkxgl6dycdnb89yh39vacrzy8z04g8qz225rklg5b288"; depends=[]; }; - csvwr = derive2 { name="csvwr"; version="0.1.6"; sha256="1wwj0zx4jawfl5264qxa90qwll971c24hyk645r0c7wwvwa8dd9r"; depends=[jsonlite magrittr purrr readr rlang stringr]; }; + csvwr = derive2 { name="csvwr"; version="0.1.7"; sha256="1yh330kh1q06f2vn8jvgirz4q7wld1ylnkjpnjh17nqq0d2lsmk2"; depends=[cli jsonlite magrittr purrr readr rlang stringr]; }; csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; cta = derive2 { name="cta"; version="1.3.0"; sha256="1i8psw6p6f4633ad17apm6v5ikrpv1dagm0s8pggpsjbbw8d655v"; depends=[intervals limSolve numDeriv]; }; - ctbi = derive2 { name="ctbi"; version="1.0.1"; sha256="1p6qv4187qjnz36gs328bm337f72jybyf3x490qn18pxjwkczj4x"; depends=[data_table]; }; + ctbi = derive2 { name="ctbi"; version="2.0.4"; sha256="15dvxrir9rahr50kp1q884l06sjlb4fd9b92k3ib4d75c58bp72q"; depends=[data_table]; }; ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0"; sha256="0g2ibk9pxay0idj55q0yh4vbdb6l6460r997fnapimn7fgyz6f66"; depends=[BH Rcpp]; }; - cthist = derive2 { name="cthist"; version="1.2.1"; sha256="1v377i3d26m6arl04iqqvj2ghc0bhns8nrgvk677gkki34ndbcz5"; depends=[assertthat dplyr httr jsonlite magrittr polite RCurl readr rlang rvest selectr stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-7"; sha256="1a01rha6sgv8zmcfjb1c438s9d9bjzdjf2pmyml1m5jmz93q70ds"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.2"; sha256="1gmm64z4p1vkh2fkbm4ayc67i6rxkxvha8fwg4zaf59bmxi7qnnc"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; - ctmm = derive2 { name="ctmm"; version="1.0.0"; sha256="0c8xw8fhgnnagldqid6hnk4ql7dyjw2zqwfysnhgcgvc7hmcbpk9"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; + ctmm = derive2 { name="ctmm"; version="1.1.0"; sha256="1npx017c4w8689ig36r54fbl40h0hd0crh3n64ypbid2xxb2j0ck"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; ctmva = derive2 { name="ctmva"; version="1.0"; sha256="0pf113y62kfdc717bmbh82d8x42wd54fk8p6q8i9zh83ylazkpf0"; depends=[fda polynom]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.10.2"; sha256="0gp7c71izpybp0sv7xrm8ndc1sih2bibj2p2404nkfjam559rwp7"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.11.1"; sha256="076v3bll8s6m61wcbwgrgrm34g0wa7gsc90mbwxwap1xfxyzjjsg"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.7.1"; sha256="1m07mha1nfss1ilcx7dna0k1p5jh4659p6rvy1hk8dk87f9kqyd8"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; + ctsem = derive2 { name="ctsem"; version="3.7.2"; sha256="0pr98lqga6lw7lp2l084jcda5b9j0wn3bwxg243p9qbqlf5q495l"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.4"; sha256="1sjsm573alsg3dvj58rwknqapcydx77zbs0b8hcf59qbbhfa3djv"; depends=[ctsem Matrix OpenMx plyr]; }; - ctv = derive2 { name="ctv"; version="0.9-3"; sha256="0rwsiipnxjlj3pq97zh2hnbv1jigys32yl3zdp34x9z2xj3v4kg9"; depends=[]; }; + ctv = derive2 { name="ctv"; version="0.9-4"; sha256="1m9gmfy05zn51qsvck2rg4nshn3rrpgbbsxvap2f3hp7mgc8nizw"; depends=[]; }; cuRe = derive2 { name="cuRe"; version="1.1.0"; sha256="19rz0wxdjsgvsckn4r6kf1x018zdsbxsd2xj82ddhwp6b1gm7iai"; depends=[date numDeriv relsurv reshape2 rstpm2 statmod survival]; }; cubature = derive2 { name="cubature"; version="2.0.4.5"; sha256="08whkhvn218089r930spn97m91vv1njgh2amksia8l3rbf7127x8"; depends=[Rcpp]; }; - cubble = derive2 { name="cubble"; version="0.1.1"; sha256="1dibxxcp92grjk4x0fgkqi37xvmb851gqc5h1za45if8fidd5zsw"; depends=[cli clipr dplyr geosphere ggplot2 glue lubridate ncdf4 pillar rlang sf stringr styler tibble tidyr tidyselect tsibble vctrs whisker]; }; - cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; + cubble = derive2 { name="cubble"; version="0.2.0"; sha256="1ldlbqbgd4sd8k1srpmjxvn3jad03bknzgfv5m09ki980m9vjq2d"; depends=[cli dplyr geosphere ggplot2 glue lubridate ncdf4 pillar rlang sf stringr tibble tidyr tidyselect tsibble vctrs]; }; + cubelyr = derive2 { name="cubelyr"; version="1.0.2"; sha256="154vwf5pj2jh66wqdh78nc0v722b4rh88hss24g5lc31wlghzc8q"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; cubfits = derive2 { name="cubfits"; version="0.1-4"; sha256="1dg60162s77p82v8vig52yl8ar8h0pijps8kqq35v1hvp5a3ny5q"; depends=[coda foreach]; }; cubicBsplines = derive2 { name="cubicBsplines"; version="1.0.0"; sha256="1dzwadhhrxgral9x4hxyyy1fyn45pmbwv6wiwfxhivkxmd3s2xdr"; depends=[]; }; @@ -7716,6 +7748,7 @@ in with self; { cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; cumSeg = derive2 { name="cumSeg"; version="1.3"; sha256="0n1hp0abnd6zn72fkgkj9k875vivn5kr3q76sjy6q6va7x24j6sg"; depends=[lars]; }; cuml4r = derive2 { name="cuml4r"; version="0.1.0"; sha256="0zwm8laprwhkjn2ji16f08952hri3bk1qvpj8yhwaqiv4cj2q43k"; depends=[magrittr Rcpp rlang zeallot]; }; + cumprinc = derive2 { name="cumprinc"; version="0.1"; sha256="153cjl6x6mm6dix77bv9614nrd7x7qimwkw96mgxwarfpf1172nn"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; cumulocityr = derive2 { name="cumulocityr"; version="0.1.0"; sha256="0ybvh5args3s1f3nra58bnfwgrlrdpw40by68az84s90v88bbz2q"; depends=[httr jsonlite]; }; cuperdec = derive2 { name="cuperdec"; version="1.1.0"; sha256="1vvkbkb3dp38xzxxdm20n6vr8yifppn1clzzcvb2rhqk9d17cdiw"; depends=[dplyr ggplot2 magrittr readr rlang tidyr]; }; @@ -7726,27 +7759,28 @@ in with self; { cursr = derive2 { name="cursr"; version="0.1.0"; sha256="08051bnxags2arn296mxwc84j55shhsfym9hd062amdvm23nxd18"; depends=[keypress]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; curtailment = derive2 { name="curtailment"; version="0.2.0"; sha256="1pk3vx9lbmvc1sj9n4n9vgbpx3xj71by0pl82ii10g69qwfllmph"; depends=[data_table ggplot2 ggthemes gridExtra pkgcond]; }; - curvHDR = derive2 { name="curvHDR"; version="1.2-1"; sha256="1a6b29kklyphv9iirm8xaxcdfcssk7ah4wm9ll53ls0alnzb15nw"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curvHDR = derive2 { name="curvHDR"; version="1.2-1.1"; sha256="0fr1qiq2qkd2nmkz6n9vrc42jdsyaz1h7qf2n5aapnpk7155c869"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curveDepth = derive2 { name="curveDepth"; version="0.1.0.9"; sha256="10mhy2nyll4d1q71qnlsal0raccz3awd0j0vi5w58di9wlv1c241"; depends=[ddalpha Rcpp RcppArmadillo]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; cusp = derive2 { name="cusp"; version="2.3.6"; sha256="0rpljddawrbq2q04fc426s57wbl3adp6mfkdv8bpjkfcyq2swbdh"; depends=[]; }; + custom_gauss_quad = derive2 { name="custom.gauss.quad"; version="1.0.0"; sha256="1rpg3wrpvmn24a8kmm3mwyqmrcx2pxhhrf40wp31nv8jfy7cfm7c"; depends=[Rmpfr]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.2"; sha256="0kjp22bzv7a3xynhm9xmabfcms21586p8caz1nk1w88qdvidqfqd"; depends=[FNN glmnet]; }; cusum = derive2 { name="cusum"; version="0.4.1"; sha256="0vjq3slkjdgls41xm637xkrg8jhv6y75xiyfcgpwrp32ixmakpcd"; depends=[checkmate data_table Rcpp]; }; cusumcharter = derive2 { name="cusumcharter"; version="0.1.0"; sha256="0ljprnn48nfl8n0zmvc547rcg4cwrfhq3zjkkimgdnf7z2d130q6"; depends=[data_table ggplot2 rlang]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutpointr = derive2 { name="cutpointr"; version="1.1.2"; sha256="1qxnh20hs3bh9v04ls7gwwl7lfc6bwl8c88dn8lkcdqyp3nyr01j"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.4"; sha256="1m2y50a1yapf1c74km9a4r47ds2z2bfp4wwwkqin7swv9v1s7d28"; depends=[data_table ROCR]; }; - cvCovEst = derive2 { name="cvCovEst"; version="1.1.1"; sha256="1imz2aync46s4ji7i5pnnv8shy247pazxa79m120k3pgq7p5bnly"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; + cvCovEst = derive2 { name="cvCovEst"; version="1.2.0"; sha256="1787dw3vg1w6mv621qhcdcfmfcxwrjwrwc3hwxqqkhgimnwrn0hy"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; cvam = derive2 { name="cvam"; version="0.9.2"; sha256="0ylfs2ry1ppigvs7py71vbslxga1d3kaijzwr8v923f3j14zkm54"; depends=[coda Formula]; }; cvap = derive2 { name="cvap"; version="0.1.1"; sha256="1vrbbn0bfyl5spnbz7vq60vgvh787vwsk6awc510x7vrqzn4yyza"; depends=[censable cli dplyr fs magrittr purrr readr rlang stringr tidyr]; }; - cvar = derive2 { name="cvar"; version="0.4.1"; sha256="14mivxlgsx1fz3602pzhd9b5p5aa9hhdif6dhg9q82kd4kz58bdy"; depends=[fGarch gbutils Rdpack]; }; + cvar = derive2 { name="cvar"; version="0.5"; sha256="066vn8flw9j0idmpi9wzvybgihdhwg3fjslx2isbrb11ldl1lwky"; depends=[gbutils Rdpack]; }; cvcrand = derive2 { name="cvcrand"; version="0.1.0"; sha256="0zdf41sjqyi7mybxhypfx1vpc15w7qj9jg9bav64qbk0q5nk7jyc"; depends=[tableone]; }; cvequality = derive2 { name="cvequality"; version="0.2.0"; sha256="1im839vzfqylphp2vr20avnzkyl02n88fngbs63d4ik7c72d9992"; depends=[]; }; cvmdisc = derive2 { name="cvmdisc"; version="0.1.0"; sha256="19b9kxqgbk1d631l3jph87pzhk4zf3xd5q5j2xsrbqz8zmm96sn9"; depends=[CompQuadForm]; }; cvmgof = derive2 { name="cvmgof"; version="1.0.3"; sha256="0s78w8ivxzscn6jbwsw0m15n3xwgbbjdqwpp4dsy3gi0nsmngjyc"; depends=[lattice]; }; - cvms = derive2 { name="cvms"; version="1.3.6"; sha256="1smz0xcbg0a69wlzlva4vicw97qylyla359zjw8q0kwa1hna0c8y"; depends=[checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; + cvms = derive2 { name="cvms"; version="1.3.7"; sha256="1n46bg760ad0r4fy27fp9rljwn2q6yyj3jn71hnww6ph0jp5f76s"; depends=[checkmate data_table dplyr ggplot2 groupdata2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; cvsem = derive2 { name="cvsem"; version="1.0.0"; sha256="148v8axwxfr328l709b6q1fmqnzmiw9g7589zgwha4d6lrx4ak4i"; depends=[lavaan Rdpack]; }; cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; cwbtools = derive2 { name="cwbtools"; version="0.3.8"; sha256="1v7pan3d00km7yq03ym3xdvlqhwrlxg5w8y2dl34dlsm67xysxh1"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; @@ -7774,7 +7808,7 @@ in with self; { d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; d3po = derive2 { name="d3po"; version="0.3.2"; sha256="0qhdk2ap9bkf4xfbpyh1k6s2kb6lgr2vgn5ns228vrckghwxhkri"; depends=[assertthat dplyr htmlwidgets magrittr purrr rlang]; }; d3r = derive2 { name="d3r"; version="1.0.0"; sha256="1qijkllfaaw0lb29j8mappm8jz9kg8gkihxq5wqhb4gabsazdwva"; depends=[dplyr htmltools rlang tidyr]; }; - d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.4-1"; sha256="0z8y61b0sl8y7hbpvpp8aiyvq574m4pdipmshnbg114swyx52d0k"; depends=[httr jsonlite keyring R6 XML xml2]; }; + d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.4-2"; sha256="0fkg14zjnlgz988pb76ihi5ajilnqji7mwnc4a3qsfjkx1acib96"; depends=[httr jsonlite keyring R6 XML xml2]; }; dBlockmodeling = derive2 { name="dBlockmodeling"; version="0.2.0"; sha256="0c1hvawb9gw6vckims3g8kzn2c4f0as5x1vw39sdvkwc92xy26lv"; depends=[]; }; dCUR = derive2 { name="dCUR"; version="1.0.0"; sha256="12i2qcjq9i1ycs6z6g3yr1imv7v4g19kdhf1vg9xkvh43pagb6h7"; depends=[dplyr ggplot2 magrittr MASS mclust ppcor Rdpack stackoverflow]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; @@ -7796,7 +7830,7 @@ in with self; { dados = derive2 { name="dados"; version="0.1.0"; sha256="1jdna8s10qz50zrsrm36y1jx489sznd86akx2lwdmriiiz3abn65"; depends=[AmesHousing babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 palmerpenguins pixarfilms rlang tibble tidyr yaml]; }; dae = derive2 { name="dae"; version="3.2-13"; sha256="0mq94ah21p1glvsbvdmi2p7nlgz1bvq7w3rz2z3mdqq18kz6nkjw"; depends=[ggplot2 plyr]; }; daewr = derive2 { name="daewr"; version="1.2-7"; sha256="138hmmrm3zcdb2rcilvrasndvsq38agp9bpikd3xbb7j4z1nrsl7"; depends=[FrF2 lattice stringi]; }; - daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; }; + dafishr = derive2 { name="dafishr"; version="1.0.0"; sha256="1n6b1r1awwxvdhn4znwp1p4jp3gvrjz017darjagx4cix0iisw1p"; depends=[dplyr fst ggplot2 lubridate magrittr mixtools readr readxl rlang sf stringr tibble tidyr tidyselect vroom]; }; dafs = derive2 { name="dafs"; version="1.0-38"; sha256="0ljhpw2f4hbkqh6c6gwqwwdsa4kp5qvyphig5zcn6qrb9ryf3wh1"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.2.1"; sha256="16dx7gpbq61xwnk3769mf6nsynqb3zgjl6l0zcvh8j0cp1s35m82"; depends=[]; }; dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; @@ -7804,6 +7838,7 @@ in with self; { dagwood = derive2 { name="dagwood"; version="0.1.4"; sha256="1lp6swfmfzv28cfybmvj7czkfljd0sldv2qqi83q0fwcb7kxgdfz"; depends=[dagitty]; }; daiR = derive2 { name="daiR"; version="0.9.0"; sha256="0kq633jpiagbpsj0190pzpxmz8df6niqc6lwqgrahxfpda798srk"; depends=[base64enc curl fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr stringr]; }; dail = derive2 { name="dail"; version="1.4"; sha256="0v6kx4lcrizx1mpdh5dly1clmdv7aa14xc5qlhk73zqi1shc3h6r"; depends=[dplyr magrittr readr stopwords stringr tidytext]; }; + daiquiri = derive2 { name="daiquiri"; version="1.0.3"; sha256="1fgblq35fm73d7ck9mqdyv1sza371fdky9d97lkmn05gdnqr1xj7"; depends=[cowplot data_table ggplot2 reactable readr rmarkdown scales]; }; dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; @@ -7816,14 +7851,15 @@ in with self; { dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; daqapo = derive2 { name="daqapo"; version="0.3.2"; sha256="1c00ppsqzjmrw16zdifkcigi4ll2nd2hlhj17lydmin0djg5cpby"; depends=[bupaR dplyr edeaR glue lubridate magrittr miniUI purrr readr rlang shiny stringdist stringr tibble tidyr xesreadR]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; - dartR = derive2 { name="dartR"; version="2.0.4"; sha256="18nqiim4c1h4hyw5pa706f0kf5jxhm48p902i893s6gvqnzq5fj5"; depends=[adegenet ape crayon data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; + dartR = derive2 { name="dartR"; version="2.7.2"; sha256="0fl78j67dab8rgddjlqvnck5qy3la7phimjrm170hirzx2dy8gah"; depends=[adegenet ape crayon dartR_data data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; + dartR_data = derive2 { name="dartR.data"; version="1.0.2"; sha256="0gi6hgvfvh1hp60fvmij2r4fgv1qigs2biw2hw05rbl55xv93ni5"; depends=[adegenet]; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; dashPivottable = derive2 { name="dashPivottable"; version="0.0.2-1"; sha256="1fv5pnvimf7w1k1lsijh9y2zk4z1z00m6m640jxvqla5i1rqy8cq"; depends=[]; }; dashTable = derive2 { name="dashTable"; version="4.7.0"; sha256="0iy07dxa90vsp3rfk8ij78j9ajz1mpxywmclxzkfj7axjyydxh5w"; depends=[]; }; dashboardthemes = derive2 { name="dashboardthemes"; version="1.1.6"; sha256="0yki4gmklrkhs6ldznabdr04smw3a112ask313z1h93dnvabr06c"; depends=[htmltools]; }; dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; - data_table = derive2 { name="data.table"; version="1.14.4"; sha256="1w28wg119w8pnzfdwp5yw7jgk7vv80b6cagms67i02c3dv1afqj8"; depends=[]; }; + data_table = derive2 { name="data.table"; version="1.14.6"; sha256="05h99rk2s1ds9igrqw2nhnk6yahgssszqlnw0y0p9p83lsndp30x"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; data_validator = derive2 { name="data.validator"; version="0.1.6"; sha256="1qzgwi9agsli96whzsyx7qxqzc5sixpqrd7z6fh4yrcv1i3li8yr"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; }; data360r = derive2 { name="data360r"; version="1.0.9"; sha256="15934ixmzw3iyqazhlz6s5cimmasf062fc8al0wdyij1f4cjcgny"; depends=[data_table jsonlite reshape2]; }; @@ -7832,7 +7868,7 @@ in with self; { dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="1.0.5"; sha256="1lf7acdslnynp65qcxhy4p291jficz47znl9jk5143q9795kbb6w"; depends=[data_table lubridate Matrix progress stringr]; }; dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; - dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.11"; sha256="0dhayggsnxjqr4wpplydayya3cns78iikmzsn3dclvyr3aw8352r"; depends=[curl httr jsonlite lubridate readr xml2]; }; + dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.12"; sha256="0jixlppbd5xmkdcsymnq0za94a466r2fq2153wdfg919z3wzbsi8"; depends=[curl httr jsonlite lubridate readr xml2]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadictionary = derive2 { name="datadictionary"; version="0.1.0"; sha256="006hzgsrnwrvsccski5xsnazz33y44h64q0fzq66vybv7y3zq3rc"; depends=[chron data_table dplyr haven Hmisc lubridate magrittr openxlsx tibble tidyr tidyselect]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; @@ -7840,21 +7876,23 @@ in with self; { dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; }; - datamods = derive2 { name="datamods"; version="1.3.4"; sha256="07ya01ifif6rjrzmy4asn6y6wkvd7a5amjmiq954iv03iyrkgvsp"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinyWidgets tibble]; }; + datamods = derive2 { name="datamods"; version="1.4.0"; sha256="04qgfbmnf6rcfca5dmvjcfi6mnn4xmqpivhdblr7gv4qab1javqv"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinybusy shinyWidgets tibble writexl]; }; + datana = derive2 { name="datana"; version="1.0.2"; sha256="00a6r4af96v4wqbqk28hr8k75wqy24z5hann1rkglifw2vj1q6vn"; depends=[ggplot2]; }; datanugget = derive2 { name="datanugget"; version="1.0.0"; sha256="1ki4kgz6y9a313f07jml39pdxhadgs287rkpnlwvcw6kgj5qxala"; depends=[doSNOW foreach]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; dataone = derive2 { name="dataone"; version="2.2.2"; sha256="0509dmvf3kgk15cjbz3m9fzanbdpa5r0rz921m776a4bsjsilv4i"; depends=[base64enc datapack httr jsonlite parsedate plyr stringi stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.4.1"; sha256="14vlcgk5sckzkc15cjvrbs113y65rqlwm1az7nsvnsqfx4x76jb1"; depends=[digest fs redland uuid XML zip]; }; datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataprep = derive2 { name="dataprep"; version="0.1.5"; sha256="1v48ry6xk0qg73j6js6m6fqd1bdhjv500bndb60zzl2qifrjfk2a"; depends=[data_table doParallel dplyr foreach ggplot2 reshape2 scales zoo]; }; - dataquieR = derive2 { name="dataquieR"; version="1.0.11"; sha256="16i3kwy6ash8fw4v1bpsc32y6nf3jnsbq0pi05vp0k5dz3p3ji1w"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; + dataquieR = derive2 { name="dataquieR"; version="1.0.13"; sha256="03fsdqihznbwr386p5grf31qjgir3hbq16zq4nhgsw6qfpyja3j1"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; datardis = derive2 { name="datardis"; version="0.0.3"; sha256="1z6rjgj7hri09nb7dldhgry4dlyx9v8zf1lqlrs7r1fwsl6znibw"; depends=[dplyr magrittr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.0"; sha256="1m7c93yk3dp1l5ysgscjvmv7z0xnmgaz4bkci4ljmmmn5a9v6r3c"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; datarobot = derive2 { name="datarobot"; version="2.18.2"; sha256="1k6nqkcxjnhv4j11lm204nl85dibljfx3w2214mz0g9d7zjqrwbi"; depends=[httr jsonlite yaml]; }; - datasailr = derive2 { name="datasailr"; version="0.8.10"; sha256="03bnrgpwhmh67zrvap3cbaqd5k6nkp63b2h8m08xrdp1ngp5inik"; depends=[Rcpp]; }; + datasailr = derive2 { name="datasailr"; version="0.8.11"; sha256="0ym1aqrlglha36z883yf92rm0fydg1qsdgdy48z32yk41xbhp5iy"; depends=[Rcpp]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.6"; sha256="0vgylf3bab0xcfg08xwvfq9yhxy6w0fxi7wp4kkxfyjb0pw15qxk"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; + dataset = derive2 { name="dataset"; version="0.1.9"; sha256="1yhr7yk1gw98macfvjz4ckgsaqw7yrszqdf11gj5b1qwgp0l53pk"; depends=[assertthat ISOcodes]; }; datasets_load = derive2 { name="datasets.load"; version="2.1.0"; sha256="1j6agly8icyn4kj88c69qzc1gyvjzhfg9ipax48qcm2m0wxzkk7n"; depends=[DT miniUI shiny]; }; datasetsICR = derive2 { name="datasetsICR"; version="1.0"; sha256="1iw8am7y6r6j21rp6r6iw1ri4c2yrgza7aw3ams4xbx6mcz3746y"; depends=[]; }; dataspice = derive2 { name="dataspice"; version="1.1.0"; sha256="1pnmb7kdx9wdvi2873rw1a7hc7spsvx4lfvfhfcqwgll46j0f1wm"; depends=[dplyr EML fs ggplot2 jsonlite magrittr purrr readr rhandsontable shiny stringr tibble tidyr whisker]; }; @@ -7862,7 +7900,7 @@ in with self; { datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; dataverse = derive2 { name="dataverse"; version="0.3.11"; sha256="1h4bbmnzssk1bycimks6536f3n9g6bb41hdycxyx8ald2gnx1c06"; depends=[checkmate httr jsonlite readr xml2]; }; dataversionr = derive2 { name="dataversionr"; version="0.9.0"; sha256="013c45fbak32bcda9zj8dk0jw57xpbriymks4n38d9nliflqr6z5"; depends=[arrow diffdfs dplyr lubridate magrittr purrr rlang tidyr]; }; - datawizard = derive2 { name="datawizard"; version="0.6.3"; sha256="0cn9ixljf4l333d401pz5rcwqkzpl6d90as153j1wrkz9rjzm6i7"; depends=[insight]; }; + datawizard = derive2 { name="datawizard"; version="0.6.4"; sha256="0iv3h08bzmijrxyv2jz70jf53i2bk14kh0vq9a93fms5z08jv19p"; depends=[insight]; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.3.0"; sha256="13nqvpc2gbz0pz2bnq2n6qa3qcwmfjfr15rznrsasl82s3myvfgk"; depends=[data_table dplyr Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-40"; sha256="1kqiy0nvdcm8mrkm6kzz5wjxv4f58710sk7fycfcnlpf4ndn30ly"; depends=[]; }; datefixR = derive2 { name="datefixR"; version="1.3.1"; sha256="1mc0s0qv90j2qaqkkmx3k054vsir8zb2n6lwx6ybkn5k48cw8zwm"; depends=[lifecycle Rcpp rlang stringr]; }; @@ -7881,6 +7919,7 @@ in with self; { dawai = derive2 { name="dawai"; version="1.2.5"; sha256="0g52bm66jnvga4sf5n5m18k5jx56vqpn886jk0k6lydj78nkq88q"; depends=[boot ibdreg mvtnorm]; }; daySupply = derive2 { name="daySupply"; version="0.1.0"; sha256="1317g60cmqlw1wy7n7x5ifh544lzsysif6192s2k16jmgzj6cz2s"; depends=[dplyr lme4 magrittr rlang]; }; daymetr = derive2 { name="daymetr"; version="1.6"; sha256="04dyc890kqr24n0lv1dl23p6s086hcgh5l6r496yycjzlyi8bm44"; depends=[httr raster sf tibble tidyr]; }; + dbGaPCheckup = derive2 { name="dbGaPCheckup"; version="1.0.0"; sha256="0gi1n4nbzz2d3z2y39x6n8l15w6x4vh47332rkpl2iba69xhjcb5"; depends=[dplyr formatR ggplot2 labelled magrittr pander purrr questionr readxl rlang rmarkdown tibble tidyr]; }; dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; dbarts = derive2 { name="dbarts"; version="0.9-22"; sha256="02hmqzfk9sgz4vndnpnpcav7wlpy9xna8zdnlwgcj4a84zz2pyk8"; depends=[]; }; @@ -7889,27 +7928,27 @@ in with self; { dbflobr = derive2 { name="dbflobr"; version="0.2.2"; sha256="04gh0xfdp077f3ppf8i101q17n2r711y47qnxb9nq5ksnf37s5jp"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; dbglm = derive2 { name="dbglm"; version="1.0.0"; sha256="1ljfi31n8d1mh1lr4q00klp74fz0c0jy9wdy2svhlzaszbrg76ky"; depends=[DBI dbplyr dplyr knitr purrr rlang stringr tibble tidypredict tidyr tidyverse vctrs]; }; dbhydroR = derive2 { name="dbhydroR"; version="0.2-8"; sha256="1gd3n6i47qbxp6d3y5sjvgmxc5p3afy2lhkg9020ws1xm0bk9q7d"; depends=[httr reshape2 XML]; }; - dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; - dbmss = derive2 { name="dbmss"; version="2.7-10"; sha256="0fr28wvv8c4h4flklxaffxijgk5cy96p5sbf90yqfascqgmvvd9y"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 rlang spatstat_core spatstat_geom spatstat_random spatstat_utils tibble]; }; + dbmss = derive2 { name="dbmss"; version="2.7-11"; sha256="0d5pvn7k6m39m0bs76y5p9qbbrahsbdxx1fkmv33gg4kpk83bbl9"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 rlang spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble]; }; dbnR = derive2 { name="dbnR"; version="0.7.8"; sha256="10lw8ax33l0q52pm07fi66fhm06n3yg48plgvz5cg14l98v7g7s5"; depends=[bnlearn data_table magrittr MASS R6 Rcpp]; }; dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; dbparser = derive2 { name="dbparser"; version="1.2.0"; sha256="06yk6i80xlvrjgi8lpzz82rhhmkbj980vpmpil57acjkfvaznwj6"; depends=[DBI dplyr odbc progress purrr readr RMariaDB RSQLite tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; dbplyr = derive2 { name="dbplyr"; version="2.2.1"; sha256="1xqdrfpl5l94cw717d90xx1hs5aswl6s38wr7qximzk8q12gdwx6"; depends=[assertthat blob cli DBI dplyr glue lifecycle magrittr pillar purrr R6 rlang tibble tidyselect vctrs withr]; }; dbscan = derive2 { name="dbscan"; version="1.1-11"; sha256="0bz66lvvg7290c5260ph92k4r7adgisbx3vml9096qhjwrkqwjgh"; depends=[Rcpp]; }; - dbstats = derive2 { name="dbstats"; version="2.0.0"; sha256="1njgl7slfwp9ymnz2lf1bbw99cddkwwwldjz9f86q1gfnhi5a8lj"; depends=[cluster pls]; }; + dbstats = derive2 { name="dbstats"; version="2.0.1"; sha256="1sa33ir8hj0z0d2ry4w7bhilx94alhdvjc4bzaj09alv6w39gpcn"; depends=[cluster pls]; }; dbx = derive2 { name="dbx"; version="0.2.8"; sha256="0pdf0l9h44666bmfsa43nrmi77ffzygb5mzjfrv7pk99qi7ryw46"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dccmidas = derive2 { name="dccmidas"; version="0.1.0"; sha256="0ng46i9rv4aw26af03ryhmcrb8xhhd8d72zbqiwrzhhkh18azbgx"; depends=[lubridate maxLik Rcpp RcppArmadillo Rdpack roll rugarch rumidas tseries xts zoo]; }; dccpp = derive2 { name="dccpp"; version="0.0.2"; sha256="06mykc25398bpp7dk903ykb3q5jx8m3nl7hxzsl7m2sa7iaikpnx"; depends=[Rcpp RcppArmadillo]; }; - dcifer = derive2 { name="dcifer"; version="1.1.1"; sha256="1lsfwla9dhdcdkyms10djac0vvns4f341z2467j0djgkdafdilc3"; depends=[]; }; + dcifer = derive2 { name="dcifer"; version="1.2.0"; sha256="0h7wir2xd2lr6h9hh8wr335lxr5w7grf7gjhqpg3a36ycd8mibbv"; depends=[]; }; dclone = derive2 { name="dclone"; version="2.3-0"; sha256="0w1bhzsnmnhsrrw5ffm89pj2wy2fmx14y7g6b1mb2wlwbczjzzsh"; depends=[coda Matrix rjags rstan]; }; dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; dcmodify = derive2 { name="dcmodify"; version="0.1.9"; sha256="0p4xw74rls7i3fymsjcrazkrp22cfrfffz63l7wyb842z902smls"; depends=[settings validate yaml]; }; dcmodifydb = derive2 { name="dcmodifydb"; version="0.3.1"; sha256="1ahrsh9xlp9c7gaz1zcp2bwlb2c4nxcchw89d1r45dvqspj4c8fn"; depends=[DBI dbplyr dcmodify dplyr validate]; }; + dcortools = derive2 { name="dcortools"; version="0.1.6"; sha256="1qcblwcv2rwrl502hiv0l0r137sa4k0kx892k2w1chm40y5vri3b"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; }; dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; dcurver = derive2 { name="dcurver"; version="0.9.2"; sha256="1v4h480lff1cyjjwb80dksiffh0y4b3s07lq2l2r21rn1l4mav6c"; depends=[Rcpp RcppArmadillo]; }; dcurves = derive2 { name="dcurves"; version="0.3.0"; sha256="0aw297hgvy25hs7cajm3xbh1q1gwk55491cs0d0gxdca58vr08sl"; depends=[broom dplyr ggplot2 glue purrr rlang scales survival tibble]; }; @@ -7920,15 +7959,16 @@ in with self; { ddp = derive2 { name="ddp"; version="0.0.3"; sha256="03gszqzh73zq04hqa2zgxn4fkiyr1fbhx3byxsdfzmmji46f8qip"; depends=[]; }; ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; ddpcr = derive2 { name="ddpcr"; version="1.15"; sha256="04q2k6kag3qx9g6iarb84ski7s895xdd20zlaw7wmidfv038kmws"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs tibble]; }; + ddplot = derive2 { name="ddplot"; version="0.0.1"; sha256="03zcnc6is4qdpz3krhhz820j0an6dr7562bnmzj787xf5parwq6r"; depends=[r2d3]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; - deBInfer = derive2 { name="deBInfer"; version="0.4.3"; sha256="0dqsbwkj3k2hm2ks13p8rsd2vh1jlw0si0xc09cqb2nwir9zvdrv"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; + deBInfer = derive2 { name="deBInfer"; version="0.4.4"; sha256="1l4wim82n5q51c1f7193d3i22qrn9kfcsddyrn8izhlwsjb9q3kp"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deBif = derive2 { name="deBif"; version="0.1.5"; sha256="03n20p7vpa28laxhxvm7drq89vr1hadxaxhwjqc1wb44bwhy4cvy"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; deSolve = derive2 { name="deSolve"; version="1.34"; sha256="08czbjvq07ax6q3k303w37q8lq50547cdx7yhp32mqnx8igk0m12"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.3"; sha256="0v59cczhwjrk7qgngmiyc7jvx11h808w4s3ww6l83n1ylx81fgll"; depends=[deSolve]; }; - deaR = derive2 { name="deaR"; version="1.3.1"; sha256="1yrn3d4gnaimzfwq5m1kz9mchp1b2gikqxqplpl08dvlnshajjmr"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; + deaR = derive2 { name="deaR"; version="1.3.2"; sha256="0si8yxbx6zvzai046gjrdyb5yv33hxijizkmgsd5p9q3h3g54aq0"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; - deal = derive2 { name="deal"; version="1.2-39"; sha256="0sw0v1mm004ky1gjw3dmvf2vb7nf2j9s9386bhqxijw63j7xnjd3"; depends=[]; }; + deal = derive2 { name="deal"; version="1.2-42"; sha256="0d516gvhqw6nfv9ijda9j04nlcjgdnnlgcf5774n8fgwjhm4azx1"; depends=[]; }; debar = derive2 { name="debar"; version="0.1.0"; sha256="03xlhnbvmkg93f6zl3x22rfwvs17fscvl8irmnm19pifk4bvbpyd"; depends=[ape aphid seqinr]; }; debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; }; debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; @@ -7955,13 +7995,14 @@ in with self; { deepboost = derive2 { name="deepboost"; version="0.1.6"; sha256="1nf9gjk9gjl2dz7cr3vh5lg8nxkbqwr82a132nw853axbdgbs9ga"; depends=[Rcpp]; }; deepdep = derive2 { name="deepdep"; version="0.4.1"; sha256="0w8wls8ivy4c0vdaxvmp8030wzww73i60nan9vriwbgk7vsjk16q"; depends=[cranlogs httr jsonlite]; }; deepdive = derive2 { name="deepdive"; version="1.0.4"; sha256="0q4jjq11bd52bx0vqjxsh0fz1b72pfy4gpj5p19z7p4czf4a46c6"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; - deepgmm = derive2 { name="deepgmm"; version="0.1.62"; sha256="1cllbq87xxzgba3a1prkjg7hdfkxjnmi8fgizqrlsvbxdhpg61yh"; depends=[corpcor mclust mvtnorm]; }; + deepgmm = derive2 { name="deepgmm"; version="0.2.1"; sha256="0vwh8wgbva2a47b2yiiqjwq5qww2ckb4l66265sbp1lbis0g96li"; depends=[corpcor mclust mvtnorm]; }; deepgp = derive2 { name="deepgp"; version="1.0.1"; sha256="0n3awf535jin1m7sirlcdj2b3skzssl6my7chlq392rrxfhpqnyr"; depends=[doParallel FNN foreach GpGp Matrix mvtnorm Rcpp RcppArmadillo]; }; deeplr = derive2 { name="deeplr"; version="2.0.0"; sha256="189kfcsd3cr0397krbfqh56x7h0v6i27s5jbfwr5zrf3jazllall"; depends=[httr purrr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2.1"; sha256="0gnf50007sj28daaz2r1rp8mvz1xpc2901bxl4yb1v4s4rcx6rhg"; depends=[]; }; deepredeff = derive2 { name="deepredeff"; version="0.1.1"; sha256="027dsmc3wmm61qc0vybn02c5dbnz5nwf80m9sywci4nhirz978ik"; depends=[Biostrings dplyr ggplot2 ggthemes keras magrittr purrr reticulate rlang seqinr tensorflow]; }; - deepregression = derive2 { name="deepregression"; version="0.2"; sha256="0bdzpxlf0vkgqx4kc5bflfarx3ivmg3pcw1m7nhbsrvw1zx70isz"; depends=[dplyr keras magrittr Matrix mgcv R6 reticulate tensorflow tfprobability tfruns]; }; - deeptime = derive2 { name="deeptime"; version="0.2.3"; sha256="0lzivg7nv9jyybjwcqpp3czj34f5jmwy6j0mbggq6rm935cn0jfn"; depends=[curl ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice rlang scales]; }; + deepregression = derive2 { name="deepregression"; version="0.3.1"; sha256="1fc4av1kbxhqbf6px2370whpqyv34nczb5ryv6znikhb30d37y3f"; depends=[dplyr keras magrittr Matrix mgcv R6 reticulate tensorflow tfprobability tfruns]; }; + deeptime = derive2 { name="deeptime"; version="0.3.0"; sha256="1pl3zrdjq66bq8z97a55gksx13qmibdk8shfx8h43j7mlplv9bxn"; depends=[cli curl ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice rlang scales]; }; + deeptrafo = derive2 { name="deeptrafo"; version="0.1-1"; sha256="16lxxd75j9bwapfx716b9fmqfz6ms4x5g98wc1yykiahjpbj8156"; depends=[deepregression Formula keras mlt purrr R6 reticulate survival tensorflow tfprobability variables]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; defineR = derive2 { name="defineR"; version="0.0.4"; sha256="1wm6ynicwk2dlx8m0k45kc1pa8i3z8w78xk3v40szy2ys5j80m7v"; depends=[common glue libr openxlsx readxl reporter xml2 xslt]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; @@ -7986,7 +8027,7 @@ in with self; { demogR = derive2 { name="demogR"; version="0.6.0"; sha256="06x82ffbdv6ifl8xh52d3npdwha67v1ylfjp78j5pa4wdqkg221b"; depends=[]; }; demography = derive2 { name="demography"; version="1.22"; sha256="1m15capbfknr4rqxmfgj1vb7rmgambk6r9ic37149525sg7wn3j6"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; - dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.3"; sha256="1rg8xra4z3q9czkqydn2587iqwp7whscv8camrkhjpc38788cf4q"; depends=[boot pspline zoo]; }; + dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.4"; sha256="0v9fgrp5vxhzc7vh1p9mmlqhs4djzizvbp5zcp0dm3ssh6wfrska"; depends=[boot pspline zoo]; }; dendextend = derive2 { name="dendextend"; version="1.16.0"; sha256="0rl4f0b73s1gdjfxgpnz87lhv131qazxb6vsv2935ad266fd0bzc"; depends=[ggplot2 magrittr viridis]; }; dendroTools = derive2 { name="dendroTools"; version="1.2.8"; sha256="095599qgikx7xbs82x4v4h555rss6vhh8b9mnpk5dj9p2lx7nf9x"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; @@ -8023,7 +8064,7 @@ in with self; { descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; desctable = derive2 { name="desctable"; version="0.3.0"; sha256="1i0124lnmzdbx468lyqmzbd6disxjifqjy8ss10fl8cin4f868lb"; depends=[dplyr DT htmltools pander rlang tidyr]; }; desiR = derive2 { name="desiR"; version="1.2.2"; sha256="149wgg5mbq95wizpc24mwb8qfxjdia4qkz66bnzjgiiyfh6r46wp"; depends=[]; }; - designer = derive2 { name="designer"; version="0.1.0"; sha256="04i5pfiz43c6khz6x5pzn67n6z24dc9yvg9fs67qwp1s1vp5572i"; depends=[bslib cicerone config golem htmltools jsonlite shinipsum shiny shinyscreenshot]; }; + designer = derive2 { name="designer"; version="0.2.0"; sha256="0k14x0gn217lvd6vr4aszy2ngm3w7b45bas3g6vmik2q7h0klvqx"; depends=[bs4Dash bslib cicerone config fontawesome golem htmltools jsonlite shinipsum shiny shinyscreenshot]; }; designmatch = derive2 { name="designmatch"; version="0.4.1"; sha256="1qjyicjvlk2xp0c9p35y8ih7l6h0416nzqfsqb5psgr1p6i1vh7s"; depends=[lattice MASS Rglpk slam]; }; designr = derive2 { name="designr"; version="0.1.12"; sha256="1sn5cnqpczzvxmcib4mcwys8y98vx3pxdxcpy2v6rvrhjsqrc207"; depends=[crossdes dplyr lme4 MASS tibble]; }; designsize = derive2 { name="designsize"; version="0.1.0"; sha256="1c9b320vssw3s1ybyialg5s85k1vfllbw40qfgmvnsr3imc2inb2"; depends=[]; }; @@ -8031,7 +8072,7 @@ in with self; { desla = derive2 { name="desla"; version="0.2.0"; sha256="1m094k06bmi1bzdwdd4yrrjynpw0n5fvbv2phfanx7q10dm51f6l"; depends=[parallelly Rcpp RcppArmadillo RcppProgress Rdpack]; }; desplot = derive2 { name="desplot"; version="1.9"; sha256="0dg8j3l6x12g4h5hsxwhxvc8i03gwlvm80l03rx3wwqsx070if1y"; depends=[ggplot2 lattice reshape2]; }; details = derive2 { name="details"; version="0.3.0"; sha256="0mygkmfmfp3a2hgql514zyh4rw3v8i4g4cls6rss0fplg4pskwc7"; depends=[clipr desc htmltools httr knitr magrittr png withr xml2]; }; - detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; + detect = derive2 { name="detect"; version="0.4-5"; sha256="12z7ci5vblksyiprlcv8gw61cl19swq0jxk0cidlfqhwvhp19inb"; depends=[Formula Matrix pbapply]; }; detectR = derive2 { name="detectR"; version="0.1.0"; sha256="1l93b8xx6xridwcvs15xgfm7w05p3r233rxpakpii3d71rnbs8cy"; depends=[doParallel foreach glasso lavaan LogConcDEAD signal]; }; detectRUNS = derive2 { name="detectRUNS"; version="0.9.6"; sha256="0yl1x0jz66hingbl094picsiyrxzxvnz0grq63rva6nwn7pv1c0b"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; detectnorm = derive2 { name="detectnorm"; version="1.0.0"; sha256="1cr5i73iigmsg0ywlm61iv1yw91vafbbf4dhvcd448qnv05cjlaw"; depends=[ggplot2 nleqslv psych Rdpack truncnorm]; }; @@ -8042,12 +8083,12 @@ in with self; { detrendeR = derive2 { name="detrendeR"; version="1.0.5"; sha256="1kx404z0xp22d1jhpn217l8wcn6p587by908a6465dfpkhc8vyyb"; depends=[dplR tkRplotR]; }; detrendr = derive2 { name="detrendr"; version="0.6.14"; sha256="18yb14blw3md83lnlzalq3aqih56nndwwljds1pjqpm0ssf1d3p0"; depends=[arrayhelpers autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr withr]; }; detzrcr = derive2 { name="detzrcr"; version="0.3.1"; sha256="0afi1ir8il5xmzkpmbc2m5mvmgzlqw8qdn04gbnwl74a03yaxxmj"; depends=[DT ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="4.1"; sha256="1n10rpripqz7x7xcrylbdq2mgzf5bprkplbxqkpws5as1rnz4q21"; depends=[]; }; + devEMF = derive2 { name="devEMF"; version="4.1-1"; sha256="0mfj2brd8rcs84v5yx2hszc21qnn5jqihb50s85nnpi8n1gj36cp"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; devRate = derive2 { name="devRate"; version="0.2.3"; sha256="05jmxlbxqx8czaxy9lhanvcz6qjwp8r33a22njr52xhfk0d4yivk"; depends=[]; }; devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; devtools = derive2 { name="devtools"; version="2.4.5"; sha256="0jwh14clyj5flygpmifk01avs7mbnj2s1686pxzfrkcshfyhw5iq"; depends=[cli desc ellipsis fs lifecycle memoise miniUI pkgbuild pkgdown pkgload profvis rcmdcheck remotes rlang roxygen2 rversions sessioninfo testthat urlchecker usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.2.1"; sha256="1v96wgr07qj39i2vh675fsp2zv11hzfksv1ipq7jpy0y7fiyn1v7"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dexter = derive2 { name="dexter"; version="1.2.2"; sha256="1bvrxbg564y5wwndl92xhz628c7qpjz7vh44a0r0rc7lrc8h0hsx"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dexterMST = derive2 { name="dexterMST"; version="0.9.3"; sha256="1c30v83lx6p90l8a9kia5p0361j3ymbabyb2r6dkkak8n8zwfydl"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.6"; sha256="10v3djwani0zd27cjlf7lch7rfipnmb2p5wa7n2y5qxjqxli9z3x"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; @@ -8081,8 +8122,8 @@ in with self; { diagonals = derive2 { name="diagonals"; version="6.4.0"; sha256="1c5pf23bcq47m9n2s5m5bkcksnifz9g06xc9149163i8mqhzia7l"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.5"; sha256="1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"; depends=[shape]; }; dialr = derive2 { name="dialr"; version="0.4.1"; sha256="01vry39wc9ssmzkpp07szzbkigazj3l23bgrva3qmpbn5jjdi2ba"; depends=[dialrjars rJava]; }; - dialrjars = derive2 { name="dialrjars"; version="8.12.54"; sha256="1xzkxn8lvlgw0y0nhp411ikqpdqj5kfd605ycmx643rbz7m2fnjd"; depends=[rJava]; }; - dials = derive2 { name="dials"; version="1.0.0"; sha256="0flpd7bxknsscv0gk6c7zz1aid9y3z6sibkvjp9zcyc5wnqldrvj"; depends=[DiceDesign dplyr glue hardhat lifecycle pillar purrr rlang scales tibble vctrs withr]; }; + dialrjars = derive2 { name="dialrjars"; version="8.13.2"; sha256="1h9b2mvjbsxyclklc8lx8mymkbq8c5p06j5dxnxgk4mkpiazgr7i"; depends=[rJava]; }; + dials = derive2 { name="dials"; version="1.1.0"; sha256="1ly675h6shfclikwg82x8vwvrb63qmklamrbsqxsa0npbafqgvpb"; depends=[cli DiceDesign dplyr glue hardhat lifecycle pillar purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.4.0"; sha256="103hq13ql8xs1zb90is2r1lanj5vpvz9rk315zvbd8am00fshc9n"; depends=[]; }; diathor = derive2 { name="diathor"; version="0.1.0"; sha256="0nbqjaxb2fzcg9w67nbrszwv9swr1kjmg4dximfc8qdya1kmv8z9"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; dibble = derive2 { name="dibble"; version="0.2.1"; sha256="14gzr7wpfv10pkk794bnvainf8z01s0nkaz9q6by8jllbpl49pm3"; depends=[dplyr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; @@ -8120,9 +8161,10 @@ in with self; { diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; diffusionMap = derive2 { name="diffusionMap"; version="1.2.0"; sha256="1rvk7069brlm1s9kqj4c31mwwr3mw4hmhay95cjjjfmw5xclff2j"; depends=[igraph Matrix scatterplot3d]; }; diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; }; + diffval = derive2 { name="diffval"; version="1.0.0"; sha256="1jz5zqk6pkprkiln8finnifh3l2859mql156rklsaabhbb6x2ras"; depends=[]; }; diffviewer = derive2 { name="diffviewer"; version="0.1.1"; sha256="01phkaaa0zylyi23siwam18i1ggfgq2m66d69lnz9ips1yh12yca"; depends=[htmlwidgets jsonlite]; }; - digest = derive2 { name="digest"; version="0.6.30"; sha256="19va0z7blshsai1jjys9vdahpfz1klicrpv8682sdnz77fa5k03v"; depends=[]; }; - digiRhythm = derive2 { name="digiRhythm"; version="1.0"; sha256="15q6iiwp9dznvmc81hwb1ni46gmkra5m9cwdf41jgv5bb35qyc0g"; depends=[crayon dplyr ggplot2 lubridate magrittr pracma readr stringr tidyr xts zoo]; }; + digest = derive2 { name="digest"; version="0.6.31"; sha256="1f9isi4i2502f88c2sh4l461hgyary2aa02zd47pb9mc1r4lya2s"; depends=[]; }; + digiRhythm = derive2 { name="digiRhythm"; version="1.1"; sha256="0wdlwgfr9rppwssh3xpsj78rqan1lsjw3nx5f855w2hh873sakwb"; depends=[crayon dplyr ggplot2 lubridate magrittr pracma readr stringr tidyr xts zoo]; }; digitTests = derive2 { name="digitTests"; version="0.1.2"; sha256="0giz0zr8rcvfv36qmqy6fpamjcansrq4bs3znnq0g97iprj0x3i5"; depends=[]; }; digitalDLSorteR = derive2 { name="digitalDLSorteR"; version="0.3.1"; sha256="1wglj3vg2d233wv431b7zla27sj9gbv1k5h66547v079qb8zvm1d"; depends=[dplyr ggplot2 ggpubr gtools keras Matrix pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment SummarizedExperiment tensorflow tidyr zinbwave]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; @@ -8154,7 +8196,6 @@ in with self; { discAUC = derive2 { name="discAUC"; version="0.4.0"; sha256="1l80xz5wrcikrs2b2i05jq3qkx468k891gwmmy5d1mymp4si3z0h"; depends=[dplyr glue rlang tibble]; }; discSurv = derive2 { name="discSurv"; version="2.0.0"; sha256="0k585cyz02vqk4w7w20rhn6g9rspmmlbdpv7k837021iyhwwb838"; depends=[data_table functional geepack mgcv mvnfast mvtnorm ranger Rdpack rpart treeClust VGAM]; }; discfrail = derive2 { name="discfrail"; version="0.1"; sha256="1ll8c0fwwmz2yw8w582422r8bk9lr1570d7m7w2n1flrnqpqmk8j"; depends=[Matrix numDeriv survival]; }; - discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; }; discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5.1"; sha256="0qsycr04xz1h90jyzxwagfkc4rkc8mb9srasvhrp7grynjxlbb9f"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.4"; sha256="1rc5kv4abx1hxgkp3vb3f247nv887vrh9l2y189blq0p6k258575"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; @@ -8173,7 +8214,7 @@ in with self; { disk_frame = derive2 { name="disk.frame"; version="0.7.2"; sha256="016sxjvbw8j6inwr1y66hck1dzpnjr79v2fiiylcpgdnc39hc0hn"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.3-9"; sha256="1vmyjch2nv7x80kj453bjbzfsdyhcmf9hw68lh2b05kpnqfm491r"; depends=[raster Rcpp sp terra]; }; - disordR = derive2 { name="disordR"; version="0.0-9-2"; sha256="168k9hybndrwaspxq5sax2aa6431cj5x5gr0vpngjfwkkq51x6l4"; depends=[digest Matrix]; }; + disordR = derive2 { name="disordR"; version="0.0-9-4"; sha256="1p8lfwyc3214nc0lm2limnnx0d7vrwq7gxp18fgdxbxknd1rfk0s"; depends=[digest Matrix]; }; dispRity = derive2 { name="dispRity"; version="1.7.0"; sha256="0qrmhlmbkg0jr9dhfmx46y8vh7nmydmm0sscnj4zrz7wf7myavrm"; depends=[ade4 ape castor Claddis ellipse geometry MASS mnormt phangorn phyclust scales vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; dispeRse = derive2 { name="dispeRse"; version="1.0"; sha256="1x2v9lkmbqa4mn5rflmln4j85jhz08aa54pj9d01rxm4nnd23qdd"; depends=[raster rgdal sp]; }; @@ -8198,15 +8239,15 @@ in with self; { distillery = derive2 { name="distillery"; version="1.2-1"; sha256="1ymmxyamkq0zbz2m4gllln1ihks2hcib6gs0mls92as79srz122b"; depends=[]; }; disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; - distr = derive2 { name="distr"; version="2.8.0"; sha256="1dyff4m33xmw6hxb3jxzr8vvajg3qz3rfcrfxjxwsswlddfz0zdv"; depends=[MASS sfsmisc startupmsg]; }; - distrDoc = derive2 { name="distrDoc"; version="2.8.0"; sha256="1iq2gbfbsf3h279yh3fnqsi39gdw15vc6r1g33xcb8kgmmqmvf0p"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; - distrEllipse = derive2 { name="distrEllipse"; version="2.8.0"; sha256="1ymfa8xpgs8zjp4psiwmll5z0vji496fivxmcavspzxy31cw70wx"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; - distrEx = derive2 { name="distrEx"; version="2.8.0"; sha256="1gwhsnlrnzyp2x97d9wfdy5pa9z3q5il934wjv4kxs9wsvkwsr5h"; depends=[distr startupmsg]; }; - distrMod = derive2 { name="distrMod"; version="2.8.5"; sha256="0bgi9vrbi6mg01i1iip3b8bqa7qzbcnd6b1w8qqr02xyqnpil9yi"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; - distrRmetrics = derive2 { name="distrRmetrics"; version="2.8.0"; sha256="17kbl8b4q8w7il1f02yqr11filhbd5axjwwna20gvjim501jizwi"; depends=[distr fBasics fGarch startupmsg]; }; - distrSim = derive2 { name="distrSim"; version="2.8.0"; sha256="0g16mljlz7fnb5k6c9h5vplm3n51sdbybv9cifbia0y6p9zml383"; depends=[distr setRNG startupmsg]; }; - distrTEst = derive2 { name="distrTEst"; version="2.8.0"; sha256="06rdcwfgbhc81zqisg414nj0kji59xvhm782b63hk54a8b2zwhh5"; depends=[distrSim setRNG startupmsg]; }; - distrTeach = derive2 { name="distrTeach"; version="2.8.1"; sha256="0ssy72clpffby4b07ynvmyfm5q4m93c204v70w5428kkjq6imf5w"; depends=[distr distrEx startupmsg]; }; + distr = derive2 { name="distr"; version="2.9.1"; sha256="0pqss05qs209nbv78n01zhap15pshjkpvk4czz3ja06l1flr1dw2"; depends=[MASS sfsmisc startupmsg]; }; + distrDoc = derive2 { name="distrDoc"; version="2.8.1"; sha256="1lrh3ml47h3d3j59dfqlbza1vh11b5m16am8ilc2dfbm230xnmf9"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; + distrEllipse = derive2 { name="distrEllipse"; version="2.8.1"; sha256="0nv87i05aa72x9pj26z37j9cwlyzyhgjbv8bphnhvzf7df1a40r2"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; + distrEx = derive2 { name="distrEx"; version="2.9.0"; sha256="0dgv81bilq5yhwqd7qnp30q8nsaw7vpmh27xw2sl20a0mm3ihz88"; depends=[distr startupmsg]; }; + distrMod = derive2 { name="distrMod"; version="2.9.0"; sha256="0y1fig29saf070phm8gh08vbjr3jl8gjbcwdi6sz4manpl8i81w7"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; + distrRmetrics = derive2 { name="distrRmetrics"; version="2.8.1"; sha256="12ig5yqn0k1f14zi96ladl3f491jrmlpii2zi49n17rp7214ny14"; depends=[distr fBasics fGarch startupmsg]; }; + distrSim = derive2 { name="distrSim"; version="2.8.1"; sha256="1z6x3bsxp9mrnnygx1048v4iadjs8kkqywjclsixmngb0nm69h61"; depends=[distr setRNG startupmsg]; }; + distrTEst = derive2 { name="distrTEst"; version="2.8.1"; sha256="0s22g7sf2q0kj8qcl09vq8prnahmm3iqc0v66kzm6hmhc314k509"; depends=[distrSim setRNG startupmsg]; }; + distrTeach = derive2 { name="distrTeach"; version="2.9.0"; sha256="0jf1v4nb900z7jcy3d34z86ykrn52xnimir1l0iv78dkh1kvwsqn"; depends=[distr distrEx startupmsg]; }; distreg_vis = derive2 { name="distreg.vis"; version="1.7.3"; sha256="1dnpcd0dpbgvnwcc83n15gr9risyzvnp5f45wg11l9fp5yi63s8j"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; distributional = derive2 { name="distributional"; version="0.3.1"; sha256="0pr34yq6igb7ciqss2ldwa7gc55xvla040x8rkd8m2hcrz5mczkj"; depends=[digest farver generics ggplot2 lifecycle numDeriv rlang scales vctrs]; }; distributions3 = derive2 { name="distributions3"; version="0.2.1"; sha256="19c8s5qshqzhvl01c7nd9912vyy0nnmc7rfg8iih2jlcpqrdql86"; depends=[ellipsis ggplot2 glue]; }; @@ -8218,7 +8259,7 @@ in with self; { dittodb = derive2 { name="dittodb"; version="0.1.4"; sha256="19qw7xjrix8vlaivha2iaff7rx8i2gp1fk135y59p4rdmm05xfd1"; depends=[DBI digest glue lifecycle]; }; div = derive2 { name="div"; version="0.3.1"; sha256="1k4c34wpwfj7yqnk1x9sjzn3dc2vdzhpy8g4c00aqs3nbgcknyn8"; depends=[dplyr ggplot2 gridExtra kableExtra magrittr plotly pryr rlang rpart stringr tibble tidyr tidyverse]; }; divDyn = derive2 { name="divDyn"; version="0.8.2"; sha256="1rqk7ih0j6d3ykx7d0r0c33bcbksw4paman5f92ragw2a96d04cf"; depends=[Rcpp]; }; - diveMove = derive2 { name="diveMove"; version="1.6.0"; sha256="0ddlc89wi76kja8zz9j72p57hz3rw9xjzrj6k5h60573c5b9b1ig"; depends=[geosphere KernSmooth plotly quantreg uniReg]; }; + diveMove = derive2 { name="diveMove"; version="1.6.1"; sha256="1jq24qys802s9cab3r9fag9jq994wjg6vni6sxd2psng846hixic"; depends=[geosphere KernSmooth plotly quantreg uniReg]; }; diveR = derive2 { name="diveR"; version="0.1.2"; sha256="0n0ldc3k0ryr20794kvqxpnk8m3qc13lkl6rxw043pkwbjqj7291"; depends=[cli crayon ggmulti loon loon_data loon_ggplot loon_shiny loon_tourr rstudioapi zenplots]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; diverge = derive2 { name="diverge"; version="2.0.4"; sha256="11hhak3ldnf83aaq7wd8f2wqcd3lqgmda78zdgcd6ksljq3mvwcx"; depends=[truncnorm]; }; @@ -8235,11 +8276,12 @@ in with self; { dkanr = derive2 { name="dkanr"; version="0.1.3"; sha256="1zic7qhwq3s9w70zi1f6qyf7pzm69k5a1p5fd4n3z4nbga54njxd"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; dlbayes = derive2 { name="dlbayes"; version="0.1.0"; sha256="058kkh67npai2ffrjdpjn4pzj8f233znl16nj6yx8wz8lkb17cb0"; depends=[expm GIGrvg glmnet LaplacesDemon MASS]; }; dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; + dlm = derive2 { name="dlm"; version="1.1-6"; sha256="0mxfakryagyg2idjhw1ydp4xqk57s3z17cv69hj16lisx8q43pc9"; depends=[]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.6.0"; sha256="0i1w3cakp72qlq9yc6ija0qb12gyb043mj1wj6f25hh75jrg3brw"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; + dlookr = derive2 { name="dlookr"; version="0.6.1"; sha256="0lnnx9r0ai79cbg4dq2aqprfql7s31y7777v1bw0931ia3nd9s51"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; - dlstats = derive2 { name="dlstats"; version="0.1.5"; sha256="00lk6fnyziaqz3hc5jvdybgsywlad755dcr9l41aqwx6gx2k1wrg"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; + dlstats = derive2 { name="dlstats"; version="0.1.6"; sha256="0bs7kgllii2nhb1sspajhlldhjav9gl0y96c949pgfijwbr01vn0"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; dm = derive2 { name="dm"; version="1.0.3"; sha256="13sh6f5da1dzd8517cgsr3lig8bihlms7bzrwgs0m4fswvj5fgfj"; depends=[backports cli DBI dplyr glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; @@ -8256,7 +8298,7 @@ in with self; { dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.5"; sha256="16s06jvwmvhxgvrmfav1xfszjrn7j2cm4jw5xyx6w5lb5434kzcq"; depends=[arm ergm glmnet igraph network sna]; }; do = derive2 { name="do"; version="2.0.0.0"; sha256="16c6ksdas678k1285vk526ga3qkfb658nq4j5z9safjkyl1d5lrp"; depends=[crayon data_table desc httr openxlsx plyr reshape2 rstudioapi rvest stringr tidyr tidyselect tmcn usethis xml2]; }; - doBy = derive2 { name="doBy"; version="4.6.14"; sha256="1ps6r7yxs0a6rpfi2yzrb9j41862za3gdl1aq9vw3j5cmgrk8w1n"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; + doBy = derive2 { name="doBy"; version="4.6.15"; sha256="14asz3bpyvxakvpap2aajk6f5j2d3d6vrvrgnlixg5q6gdbh465m"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; doFuture = derive2 { name="doFuture"; version="0.12.2"; sha256="0w07pmzpsfq4kvfc745s1i9b6dfn1df1wrfi4s9ys4ir3g2s8nk1"; depends=[foreach future globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.8"; sha256="18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; @@ -8270,7 +8312,7 @@ in with self; { doc2vec = derive2 { name="doc2vec"; version="0.2.0"; sha256="0249hm0103kxxsi4gks4h20wf6p00gbrk9jf8c148mbja1l56f6v"; depends=[Rcpp]; }; dockerfiler = derive2 { name="dockerfiler"; version="0.2.0"; sha256="1j773kpbg38bh7y60s4mysz67kxqhm4ziammy07iw680rpqffvms"; depends=[attempt cli desc fs glue jsonlite pak pkgbuild R6 remotes renv usethis]; }; docknitr = derive2 { name="docknitr"; version="1.0.1"; sha256="1mhdjv6yznzyx911f0m3m0i7jlzj7h12ikkxb9b6zj68bdplv30b"; depends=[knitr rstudioapi sys]; }; - doconv = derive2 { name="doconv"; version="0.1.4"; sha256="1vg45x3wwqhkwq9sw4lrni31bmzql7a70ncbjw2dj5ja8l22jjdk"; depends=[locatexec magick pdftools processx]; }; + doconv = derive2 { name="doconv"; version="0.2.0"; sha256="1pvzpxv60ghninmn5sawqqx988yl2151kqs4qj5qrb7fpgph481w"; depends=[locatexec magick pdftools processx]; }; docopt = derive2 { name="docopt"; version="0.7.1"; sha256="1zxhwizs916qm5by7nfslqnarl2q5202xc2azlhrnzk0wj3khiwz"; depends=[]; }; docopulae = derive2 { name="docopulae"; version="0.4.0"; sha256="186mfiy4ygx6spnv7yrm5h0k6nf2g1xhk1l05iij39j5al5d9j21"; depends=[]; }; docore = derive2 { name="docore"; version="1.0"; sha256="0x6c2yqr05v62ksn9a5swf44q8w7acfk00589mkipw643rg4l64y"; depends=[bit64 pracma]; }; @@ -8278,12 +8320,12 @@ in with self; { docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documenter = derive2 { name="documenter"; version="0.1.2"; sha256="1q04b95h6va3178lwp56zc45vh838vxl071w1ym60n5v6v4jsc4f"; depends=[htmltools magrittr officer xml2 yaml]; }; - docxtools = derive2 { name="docxtools"; version="0.2.2"; sha256="0ds8qy21x7cq9qmnn6gggzf8kxdphq7nf2mx5gqx829zgkripsfq"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; + docxtools = derive2 { name="docxtools"; version="0.3.0"; sha256="0zfmmwnjzja80krflg2cl9a1ldg6qj1m0gppralfs59ag1jr7kqh"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.6.5"; sha256="1kki49g0sfhbx2d4swrkv21akws8ayrsd4h3v148xmzdlsrvhhiw"; depends=[dplyr httr magrittr purrr xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.2.16"; sha256="0djml4z5hbr4xdj1a7syijysjxi9myb5xfrsy5r2db5m609s27sj"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; + dodgr = derive2 { name="dodgr"; version="0.2.18"; sha256="1xnb4kdqjllg048y2bnl1pzq7xq15fg1nizr7ibhsfscjsgysgqg"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; - dogesr = derive2 { name="dogesr"; version="0.1.0"; sha256="1465vq5yhvhmc0apj8vlwmrqsy3g51iyn3ndv8rwd2zgbbfzcp30"; depends=[dplyr]; }; + dogesr = derive2 { name="dogesr"; version="0.1.5"; sha256="086x3hvsmx5phxrp5mpy9l6z28xxgc4n3mgrg2byix2l8klhp0cg"; depends=[dplyr ggplot2 knitr qpdf rmarkdown]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; domir = derive2 { name="domir"; version="1.0.0"; sha256="10kqza6r8nxlvmcx3bfqfyfvivv4pdkm7qqc859384n7dyjx88nx"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; @@ -8310,7 +8352,7 @@ in with self; { downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dowser = derive2 { name="dowser"; version="1.1.0"; sha256="1yp8l6ffmrl5xph35gg49yiavisxg710djbnwnqn12m4q6cpsa7a"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; - dparser = derive2 { name="dparser"; version="1.3.1-8"; sha256="096zpbfyi3pja17i3wgi85fm7j8abrqpp20fy52nfy1pzrm4mmhi"; depends=[digest]; }; + dparser = derive2 { name="dparser"; version="1.3.1-9"; sha256="0ln3dg3mwfqf3pjvssqnqasq87yqqp3raf5f88zrzmibvq13d6i7"; depends=[digest]; }; dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; dplR = derive2 { name="dplR"; version="1.7.4"; sha256="1gnihbgbw5dimnzf23fhlkwairfdaixs7ss6rkhk45y551hbwf65"; depends=[boot digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; dplbnDE = derive2 { name="dplbnDE"; version="0.1.1"; sha256="0hwb4lvydqlkbcxp3jwgzkqk6sqdjkcmkya1cah60sc15n816ksd"; depends=[bnclassify]; }; @@ -8334,7 +8376,7 @@ in with self; { drawer = derive2 { name="drawer"; version="0.2.0.1"; sha256="165w0lk6kp0hw85y1q3wj50jn5jbi4rn00vgz8q0wy68qw2ymhh5"; depends=[bsplus glue htmltools magrittr shiny stringr]; }; drawsample = derive2 { name="drawsample"; version="1.0.1"; sha256="018v4amapfwxx6k4s9drcv2vwil7cplnkwlrhy9djc0a02jxx2l5"; depends=[dplyr lattice moments psych readxl shiny shinycssloaders shinydashboard tibble xlsx]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; - drda = derive2 { name="drda"; version="2.0.1"; sha256="1ilcjlcryi7yyqm2k27ylk8gvmkjcr308px97ija69gynjbg981s"; depends=[]; }; + drda = derive2 { name="drda"; version="2.0.2"; sha256="0vp6i62j0jgw1vh6vrlj5svzbxrpxpkgv4m4fp33k8nq4zz7af6v"; depends=[]; }; dreamer = derive2 { name="dreamer"; version="3.1.0"; sha256="10yvdg5nkw4nawy9hdqyrsgh01xga8l3hn3qi1sbjzniv7903v7d"; depends=[coda dplyr ellipsis ggplot2 purrr rjags rlang rootSolve tidyr tidyselect]; }; dreamerr = derive2 { name="dreamerr"; version="1.2.3"; sha256="0g3gl4nzfw02alhyjw9flylfr2awyijjim50j1jdnp677zqlxkmf"; depends=[Formula]; }; drf = derive2 { name="drf"; version="1.1.0"; sha256="13b31rynknzirnvgygs1ar5968xdh8dhg60ibn0g359gnzadn7ad"; depends=[fastDummies Matrix Rcpp RcppEigen transport]; }; @@ -8355,16 +8397,17 @@ in with self; { ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; ds4psy = derive2 { name="ds4psy"; version="0.9.0"; sha256="1w2234bnvniivivaa9k09fblw3l7dy2fiwk611x1iwp58xjmpr7c"; depends=[ggplot2 unikn]; }; dsa = derive2 { name="dsa"; version="1.0.12"; sha256="16lqqm0lcgpkzkj7d0akamzap85aj4dyj5rs5fkb5b9bjqa5r4c5"; depends=[dygraphs forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava seastests timeDate tsoutliers xts zoo]; }; - dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dsb = derive2 { name="dsb"; version="1.0.2"; sha256="155ajjpy8g0afk2l9gmagzmn2mac0sni0rwcb9r1h97wdjcyl7pl"; depends=[limma magrittr mclust]; }; - dscore = derive2 { name="dscore"; version="1.4.0"; sha256="0vjrxdgss79pmd8vkarvgqqm465byz17r7r93k5i3923xm02kavr"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; + dscore = derive2 { name="dscore"; version="1.7.0"; sha256="0nkfx4ghnsn8ks6cxmyfhm61jli73ybv477i7q86xj2yb013vdyp"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; + dsdp = derive2 { name="dsdp"; version="0.1.0"; sha256="02646y75gng5ifblib834i19qc9jgl6i3grlk4p3nsy7xs8cl02s"; depends=[ggplot2 rlang]; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; }; - dsfa = derive2 { name="dsfa"; version="1.0.0"; sha256="13y25bgy9qyncgm3z10irpnjw5bgqsqq2wmkmi5yqpdw3xm5d5f6"; depends=[copula gratia mgcv Rdpack sn]; }; + dsfa = derive2 { name="dsfa"; version="1.0.1"; sha256="0ai7hdr1jbp842ixjcvadksi4pcjplyglp27dlmfkjp0p0jsfbww"; depends=[copula gratia mgcv Rdpack sn]; }; dsims = derive2 { name="dsims"; version="1.0.1"; sha256="15yy3kivg26pmzaby0kaj4vq4526jrnvpiqj24bcvh7sskv8myif"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; }; dslabs = derive2 { name="dslabs"; version="0.7.4"; sha256="05v51rckpfjz2cbms250sv0q34l0ip841w9ardvs51s2x7r8qypc"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.3.3"; sha256="159hlllbp4qy5dxmxgsjcl2ksflq7z7v1ra5d7piyanm9c632q8a"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmisc = derive2 { name="dsmisc"; version="0.3.3"; sha256="19760hcb5154rayhj72r48r7glh2qyaf178zkxplywmsw338kws4"; depends=[Rcpp stringr]; }; + dsmmR = derive2 { name="dsmmR"; version="0.0.96"; sha256="1857jxx22jvs3022qdf1nr2krds8g7b8lkd5vchvf01h1fqja2nj"; depends=[DiscreteWeibull]; }; dsos = derive2 { name="dsos"; version="0.1.1"; sha256="0fb2wwv7g829yvvgkkhsmcgspkx316zr828vqs0hbrr6ll7f8sfa"; depends=[data_table future_apply ggplot2 scales simctest]; }; dsrTest = derive2 { name="dsrTest"; version="1.0.0"; sha256="1nfwcab6p7swki8d2j2dywj93xidkjqcq84majvq90yabx353jd3"; depends=[asht exactci loglognorm]; }; dssd = derive2 { name="dssd"; version="1.0.0"; sha256="1svzd3d32lw6qvrpkgnidyrpq1903y2a1xplyq51gf2niwjyaxa0"; depends=[ggplot2 rgdal sf]; }; @@ -8386,11 +8429,10 @@ in with self; { dtwSat = derive2 { name="dtwSat"; version="0.2.8"; sha256="1k4xdnx2ca2sr4pba59q86860bzwxsg94mzr56gjdyfp1rmasqv3"; depends=[caret data_table dtw foreach ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales sp xtable zoo]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.11"; sha256="1n4xgjd712agkhbqyyc4jy661rg1lmjfqwg778bfma17y6ad7gzp"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.4"; sha256="0ssdq9gjys9iskwpkllp0m2ig2s7j6jmyq1b5j5lkns5f5aqa7j6"; depends=[]; }; - dual_spls = derive2 { name="dual.spls"; version="0.1.2"; sha256="0cy3l715bf8l6yx5sdqmz9v5an3jr0zqhc99hzqv8iyzrdrd8hwd"; depends=[pdist]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.5.1"; sha256="0pn1d7jvv6hd8glaj4vd60q2clb68l5ncm85mw057nhqllqjzram"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.6.1"; sha256="085cpb0rhiyipffzdqqscblrwav5hfz57r3475ccjn9xyf7n0pmw"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; @@ -8404,25 +8446,25 @@ in with self; { dwlm = derive2 { name="dwlm"; version="0.1.0"; sha256="0n5dil9qvyy4gish3wnv8bzq0ci1p0dr2vmbbadl29jl7rd1v0rc"; depends=[]; }; dwp = derive2 { name="dwp"; version="1.0"; sha256="1q8gbn18gsgknazzvdg5qg2lzqdaz3x14w210hw06q98dfpkvfih"; depends=[boot expint GenEst gtools invgamma magrittr MASS matrixStats mvtnorm numDeriv plotrix pracma sf statmod VGAM]; }; dyads = derive2 { name="dyads"; version="1.2.1"; sha256="0nx4gx51p0qz1565yn7xg0ijrkqvn9ql9hrmp5lwl4lxvsjnwki1"; depends=[CholWishart MASS mvtnorm RcppZiggurat Rfast]; }; - dycdtools = derive2 { name="dycdtools"; version="0.4.2"; sha256="0i5wrmcmryf6pl07c08hk8hzchdal63czh280g040n8c4i9gkz6b"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; + dycdtools = derive2 { name="dycdtools"; version="0.4.3"; sha256="06hm00mfkkg5yxpf30xb4i21bna0hpa0g86vx9qz9vf7f7cvdwjx"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; dymo = derive2 { name="dymo"; version="1.1.0"; sha256="0s1gpi5qiafkf91awyx52qw15qs7m18bql51jibgh1lqnqgv1757"; depends=[fANCOVA ggplot2 greybox imputeTS lubridate MASS matlib modeest moments narray purrr readr scales tictoc]; }; dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; }; dyn_log = derive2 { name="dyn.log"; version="0.4.0"; sha256="0vlzv6zy29qhygm77kww65wpnp77a93ja13vr4p2yyychrjspqx3"; depends=[crayon glue R6 rlang stringr yaml]; }; dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.6"; sha256="04026jz4vdyj2a2kry5kk5k84cy4vqqrcn328hxwnwh7r8i7klvn"; depends=[tcltk2]; }; - dynConfiR = derive2 { name="dynConfiR"; version="0.0.1"; sha256="1ndm5ccs8lpp00mb184paq84kzs9p7a39yzqpcyfdy7w7cl618bd"; depends=[dplyr Hmisc logger magrittr minqa progress Rcpp rlang rtdists]; }; + dynConfiR = derive2 { name="dynConfiR"; version="0.0.2"; sha256="11grish5x9xiw6gkr2bmg1vpi2hdqw7j52czhgc9d9gxvxlyjxp8"; depends=[dplyr magrittr minqa progress Rcpp rlang]; }; dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; }; - dynRB = derive2 { name="dynRB"; version="0.17"; sha256="0zihmhky087l8hl5jmwlkjmiihn4v3bqwfzyjzzc62g8kcmq0mkp"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; + dynRB = derive2 { name="dynRB"; version="0.18"; sha256="0sz0a1g6z48f0s7ch86y9mvazwk4gdswjj179a13d0yjhy9rgpk0"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; dynaSpec = derive2 { name="dynaSpec"; version="1.0.1"; sha256="0wzfy50602wlsh4sbfjadsr01f3az2lvk5c4px3qmcvv5gybd6w0"; depends=[ari av gganimate ggplot2 magrittr NatureSounds pbapply png scales seewave tuneR viridis]; }; dynaTree = derive2 { name="dynaTree"; version="1.2-14"; sha256="11aq7z6ayz9yi6hjc4nw1fa1sq4c9sgpiqp2ihznfq06zj8rd7nl"; depends=[]; }; - dynamAedes = derive2 { name="dynamAedes"; version="2.1.0"; sha256="0zpqkn8z4rcyrg5yh45ncaz7j3knc8vgl28k0kfp5dr2q7i4zsbm"; depends=[doParallel drc fields foreach insol raster slam sp]; }; - dynamac = derive2 { name="dynamac"; version="0.1.11"; sha256="0dzw4h128z53vwdpkikhxqil0xjrcjrp1zmz0fy2qhq0n74sdyar"; depends=[lmtest MASS]; }; + dynamAedes = derive2 { name="dynamAedes"; version="2.1.1"; sha256="0a4wc8sx4mh2dpsp998raapi2bd5gb9bfd0b0a54z6j0lfsjkv5v"; depends=[doParallel drc fields foreach insol raster slam sp]; }; + dynamac = derive2 { name="dynamac"; version="0.1.12"; sha256="0gggzhidn5z4g7pzqx1bg56prnh9krph65k3yj677qrff12abbx9"; depends=[lmtest MASS]; }; dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; dynamichazard = derive2 { name="dynamichazard"; version="1.0.2"; sha256="1khfy2fhvzgp165arj1yqvqi5p6lg94sxikwp5s5dxnsgzny00xm"; depends=[boot Rcpp RcppArmadillo survival]; }; dynatop = derive2 { name="dynatop"; version="0.2.3"; sha256="06wp8ld22k3r76imsj8wkrpplmbdlgbl71p94ddglwp8yfq1igsp"; depends=[R6 Rcpp xts zoo]; }; - dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.3"; sha256="00mzyq2fl725yq8laijdi8v8ibq2c9ndjxx6xddbiqfyisy6g1x1"; depends=[jsonlite R6 raster]; }; + dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.4"; sha256="0g4v48nvzsby6h2rr65s7palc3bsp552cmrsins56kmh0dmwdm0c"; depends=[jsonlite R6 terra]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; dyndimred = derive2 { name="dyndimred"; version="1.0.4"; sha256="1rj45bgms1x0zm1xjw2ylm45w9xnd68pmgb8dckzkszqg27d0fbh"; depends=[dynutils irlba lmds tibble]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; @@ -8489,30 +8531,30 @@ in with self; { easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; easyr = derive2 { name="easyr"; version="0.5-10"; sha256="1qiw3bvhn2zdl6gzj90zl09mqk8ba6cd5pbl917hpfa818z98z82"; depends=[data_table digest dplyr foreign glue Hmisc lubridate openssl readxl readxlsb rlang rprojroot stringr XML]; }; easyreg = derive2 { name="easyreg"; version="4.0"; sha256="1w4wlhziyhdyldm0zgnm73fnxrh0fv8hwcw5j8ircxb4npx7bcgg"; depends=[nlme]; }; - easystats = derive2 { name="easystats"; version="0.5.2"; sha256="0yyvcla46yvbaa0ss2adfz5arxw6pw1if2bjf2lg9k1p6knhvs64"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; + easystats = derive2 { name="easystats"; version="0.6.0"; sha256="09a2gshg0h01w79g3zq66v5h0vbkrz9pgj3dijmccix28bmmqar3"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; eat = derive2 { name="eat"; version="0.1.3"; sha256="09lbgzc6qzvgksk0gdwlldd928mdibh5w2397nnjg4qx27lvj9yq"; depends=[conflicted dplyr ggparty ggplot2 ggrepel lpSolveAPI partykit Rdpack reshape2]; }; - eatATA = derive2 { name="eatATA"; version="1.1.0"; sha256="15fwwvgvjk87llaslz2n0sy51178b97f1apcrycw3mc23iib5r4h"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; + eatATA = derive2 { name="eatATA"; version="1.1.1"; sha256="1pm66hvjqcgjbdkvfwxn3myzb6a458hkwg7cd6lhkp1mmj7anigs"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="0.20.0"; sha256="1wr186fzrpi3dix27m55xvkx55rgbdzx5zgs6gngwjzljqzhwa92"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; - eatRep = derive2 { name="eatRep"; version="0.14.5"; sha256="12s2qpacb15jx1ra0n8423mdk00waqhp1lb7b3cm11c5kp6kag5n"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; - eatTools = derive2 { name="eatTools"; version="0.7.3"; sha256="13i5ldaqxx3qch6pwm647m73k7wqzv585bf6krb0yns1a3kagm76"; depends=[data_table]; }; + eatRep = derive2 { name="eatRep"; version="0.14.6"; sha256="1pmjfz2m7z0n32cdzhxjxx3cllvhrd8nap9lqbfj8avd5sbsvfbp"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; + eatTools = derive2 { name="eatTools"; version="0.7.4"; sha256="0qmbwwvqfkyd4z41hihza0996dvsvqshs3pqblfzdlbzyn7glh5b"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; eba = derive2 { name="eba"; version="1.10-0"; sha256="03jr54xq109x9bf8kcs8mi7am17l9ya3xdkdppd8imwd2paqrssk"; depends=[nlme psychotools]; }; ebal = derive2 { name="ebal"; version="0.1-8"; sha256="06hkk0fargzhzqn841c406r72y7jd53mjxgi4hzb2ahnpaiq2q1l"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.6"; sha256="1qzwpr76nwvgylqdg7vhrbvh2lb1zrxx3g120yz156hhs4awv4kz"; depends=[igraph]; }; - ebirdst = derive2 { name="ebirdst"; version="1.2020.1"; sha256="16k4w1nn5f2pj57k9mrgknw67svdngwmykajvcwdps763kl3s28j"; depends=[DBI dplyr gbm ggplot2 gridExtra jsonlite magrittr mgcv precrec PresenceAbsence raster rgdal rlang RSQLite sf stringr tidyr viridisLite]; }; + ebirdst = derive2 { name="ebirdst"; version="1.2021.1"; sha256="19hz86a0za72av6gdbjsxx0m0cmgrnsbqnj1kksw7zhcwsa4za6p"; depends=[DBI dplyr gbm ggplot2 gridExtra jsonlite magrittr mgcv precrec PresenceAbsence raster rgdal rlang RSQLite sf stringr tidyr viridisLite]; }; ebmc = derive2 { name="ebmc"; version="1.0.1"; sha256="1z6s1blc2b6b13pk2sd6lcczdcldgjh65cnycjcw7d2g2hnxcifh"; depends=[C50 e1071 pROC randomForest rpart smotefamily]; }; ebnm = derive2 { name="ebnm"; version="1.0-9"; sha256="0izzfylcmq6zajngjyw85kbr8jys49qcgsadqkj85v2k1hg2jw7q"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; + ebvcube = derive2 { name="ebvcube"; version="0.1.2"; sha256="02zmq4437r6d2988vwlb21x6i4hgvg3mn790qqxsz5qjivpnfz21"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; - ecb = derive2 { name="ecb"; version="0.4.0"; sha256="0hn1d1hxilwxxmxzzpdcj81d4vy8fbjk1z09kw7j0b2p04wrdlkc"; depends=[curl httr rsdmx xml2]; }; ecd = derive2 { name="ecd"; version="0.9.2.4"; sha256="0cdfdbkjjxs78bvvy5zrax0qgcc5fzhlxl3wqapfxigf5xlxlavh"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; - ecespa = derive2 { name="ecespa"; version="1.1-15"; sha256="1rr9b9bz8xqadj7mnix6dbs04dfbw8p9wyfilks9slkf1232nyav"; depends=[spatstat spatstat_core spatstat_geom spatstat_random]; }; + ecespa = derive2 { name="ecespa"; version="1.1-16"; sha256="1hlfrbwy119gwqf39z81j3nsc1y6gsyh2jy7qid7hp5llbmym10k"; depends=[spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; ech = derive2 { name="ech"; version="0.1.2.0"; sha256="0xkgbqs6wmfp6a7dih4n850dw6ky596hlpmfrv72lnp77w03pll9"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.4"; sha256="1xwr6282mnbg4hmljfanvdkya3hk8hix4g1pzw69w8x715p2b142"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.4.7"; sha256="0h2zassbc3r99466swlc5j991xpmiwqql57vwls74yn2pi1cavdc"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; + echarty = derive2 { name="echarty"; version="1.5.0"; sha256="0ipnci76yn8gqa5jk51aprywd54933fgqf2mdp2zfwcwirgz1642"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; @@ -8522,10 +8564,10 @@ in with self; { ecm = derive2 { name="ecm"; version="6.3.0"; sha256="1g8y8wks7asjyybdh4nf19w5v8kvl56n69dl0sd0mlir98i4jmr3"; depends=[car earth lmtest sandwich urca]; }; ecmwfr = derive2 { name="ecmwfr"; version="1.4.0"; sha256="1l2w8rgxb8dphnfwvhxf09k8h79zy0qxlwz6rf2gbx0kyh5h7zi8"; depends=[curl getPass httr keyring memoise R6]; }; ecoCopula = derive2 { name="ecoCopula"; version="1.0.2"; sha256="1j3n9h7rm66r8vmzzhy5mjh36gs1qnsh7rq33ymjpkkfy698gbpm"; depends=[betareg doParallel foreach glasso glm2 igraph MASS mgcv mvabund ordinal plyr sna tweedie]; }; - ecochange = derive2 { name="ecochange"; version="2.9"; sha256="1sz58rxwkq387pbc1hdc7g0swk054shz5xpfij9wdz7llx0pjvk4"; depends=[getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; + ecochange = derive2 { name="ecochange"; version="2.9.1"; sha256="1m27m0m7ccirjdr4c76lnj1ilw979i8wfc2xjja0drcnihlbspqa"; depends=[getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; ecocomDP = derive2 { name="ecocomDP"; version="1.2.1"; sha256="06im6d0fx749ic6kjbxa6mk4cn98lz2q7939v627qrhwjkmmgx7a"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; ecodist = derive2 { name="ecodist"; version="2.0.9"; sha256="1m78bgbr7xjlc01q4n921y3aq2nkdbdkv9qpppfarw0d77pqpsdf"; depends=[]; }; - ecolMod = derive2 { name="ecolMod"; version="1.2.6.3"; sha256="17lsakz4kjc34v04c2j1blnskxpv4qv6phlp5ah691f2v4p147hx"; depends=[deSolve diagram rootSolve shape]; }; + ecolMod = derive2 { name="ecolMod"; version="1.2.6.4"; sha256="1kbllyh986468182q28g0hhyf2y58lcqd0wc7izi0fcw3ww2xyh6"; depends=[deSolve diagram rootSolve shape]; }; ecolTest = derive2 { name="ecolTest"; version="0.0.1"; sha256="0gkhf8gdjvkys54x0qx0h5i0lz0ksba6xdy15wzblzhym43vh9wf"; depends=[]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; econet = derive2 { name="econet"; version="1.0.0"; sha256="1igcyhn0gzv82rm5ki59ivmr3q9ryrimyfwybnppcpvg38wdpvwj"; depends=[bbmle doParallel dplyr foreach formula_tools igraph intergraph MASS Matrix minpack_lm plyr progressr sna spatstat_utils]; }; @@ -8537,7 +8579,7 @@ in with self; { ecorest = derive2 { name="ecorest"; version="1.0.0"; sha256="13x95z99yqld1fvfgzbm6ahrnvfvcqwlb23yjr187yg83iynh79v"; depends=[viridis]; }; ecosim = derive2 { name="ecosim"; version="1.3-3"; sha256="190xf0xy1cw40qx8x6y4m9avspxh0y11ffl3s18d5d2zr7rj3ag2"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.4.2"; sha256="0vfaf27bv687ypxg5apzv63rl495rxyflqw33j17i4h0s7cjkgrm"; depends=[FD]; }; - ecospat = derive2 { name="ecospat"; version="3.3"; sha256="0gh4n6d4fcnlpp1xd12j881v40lvph4f4pg1j4hj0w17xjzz9zcf"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo ecodist foreach gbm gtools Hmisc ks maptools matrixStats nabor poibin PresenceAbsence randomForest raster sp vegan]; }; + ecospat = derive2 { name="ecospat"; version="3.4"; sha256="0l93v8rbq41ll36riq6vhb22g5prp2rnlbn8i4lq85vvg1l00zfy"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo ecodist foreach gbm gtools Hmisc ks maptools matrixStats nabor poibin PresenceAbsence randomForest raster sp vegan]; }; ecostats = derive2 { name="ecostats"; version="1.1.11"; sha256="11h5s196aap64jch1123srbwy3907cvc4vgh0lvn5wkxbszrzypc"; depends=[ecoCopula GET MASS mgcv mvabund mvtnorm]; }; ecostatscale = derive2 { name="ecostatscale"; version="1.0"; sha256="14i5wg5qxqn3qzycgqda6blb0imkckq23gl3c3whfa72a3a8y30q"; depends=[deSolve mvtnorm]; }; ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; @@ -8555,14 +8597,14 @@ in with self; { edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; edeaR = derive2 { name="edeaR"; version="0.9.1"; sha256="1zv6fr7n8arx610ccbml04gfrzm9ry3s0lw68hhyijw43xvxrd3z"; depends=[bupaR cli data_table dplyr ggplot2 ggthemes glue hms lifecycle lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; - edecob = derive2 { name="edecob"; version="1.2.1"; sha256="1lb2df0w4hf2gchdfbyw1ykb8db5bkilgyml1lhdnv209anwjh2n"; depends=[ggplot2 rlang]; }; + edecob = derive2 { name="edecob"; version="1.2.2"; sha256="1k9790xamyw8ksfgvd8gka1f5mghfma6akdj7bqmlqv3yrlpgbxr"; depends=[ggplot2 rlang]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.2.1"; sha256="076far4fhd6rpa6fwffad4cgchjvar135yblvlrm33s9pd5bf0hn"; depends=[]; }; edfun = derive2 { name="edfun"; version="0.2.0"; sha256="1wxx6bgy03z7c1d6556bbjl1cb49n2vn734fw2d5c1jk0zsh3fmz"; depends=[]; }; edgar = derive2 { name="edgar"; version="2.0.5"; sha256="1rm6ba4rncfsq7ndqdlkwrqqsak1n7ywsrcnxyr6ysnzgqx65y9n"; depends=[httr qdapRegex R_utils stringi stringr tm XML]; }; edgarWebR = derive2 { name="edgarWebR"; version="1.1.0"; sha256="1v9rdj2qdcvzz7g78pa9j6l8d6zjz1q06h09c4547r67bzfz1nxy"; depends=[httr jsonlite xml2]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; - edgebundle = derive2 { name="edgebundle"; version="0.4.0"; sha256="0f6kqyvx52qgm9qzl0vjlh53bdjiwscfjhk9yqvgxf9ih33718hi"; depends=[igraph interp Rcpp reticulate]; }; + edgebundle = derive2 { name="edgebundle"; version="0.4.1"; sha256="196np22ibvj31f5f45gl5ni5byj1z2h4vyxxcqarny2zfk00qg9j"; depends=[igraph interp Rcpp reticulate]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; edgedata = derive2 { name="edgedata"; version="0.2.0"; sha256="11sc7x0m00yhn2c4601dpjv3brmf57i8barsl3p7bawcvka8z5lr"; depends=[]; }; edibble = derive2 { name="edibble"; version="0.1.2"; sha256="1a06p6jy7j4ml8q71s6mcpp1qm39vv7nz21ac0y0wssqmicsr5x3"; depends=[AlgDesign cli dae magrittr nestr pillar R6 rlang tibble tidyselect vctrs]; }; @@ -8570,7 +8612,7 @@ in with self; { editData = derive2 { name="editData"; version="0.1.8"; sha256="170i8p264zj716h58bb6pvgh2lnz1w5vplnrcv8vizppi0n1js6l"; depends=[dplyr DT magrittr miniUI openxlsx rio rstudioapi shiny shinyWidgets tibble]; }; editrules = derive2 { name="editrules"; version="2.9.3"; sha256="07j8wj0fk34irqgsz70h2wad3wdjv5xl1cl702vxbr0nvmpw2ngl"; depends=[igraph lpSolveAPI]; }; edl = derive2 { name="edl"; version="1.1"; sha256="19p0qr9lm0kdinh4qnqx7bzxkbvcfpp6mbddwh0hgsgqkbw916cp"; depends=[data_table plotfunctions]; }; - edlibR = derive2 { name="edlibR"; version="1.0.0"; sha256="008wyzmrnzga470p88hg6zxqj6jn5y27vadxk03nx9qx0ap6f97r"; depends=[Rcpp stringr]; }; + edlibR = derive2 { name="edlibR"; version="1.0.1"; sha256="0ibl8zcaf2p2xb3498zbin7g4ipanyxc9m9zkcj43h2r0304xgsk"; depends=[Rcpp stringr]; }; edmcr = derive2 { name="edmcr"; version="0.2.0"; sha256="06ms8zyygkgq3divall8paiiw5blqxfgml8iy339zfyiwfxabw5a"; depends=[igraph lbfgs MASS Matrix nloptr sdpt3r truncnorm vegan]; }; edmdata = derive2 { name="edmdata"; version="1.2.0"; sha256="042imrnn242jzb9wb4ghjganqmx61zjwspqy9qpkxqi9nr7zxr75"; depends=[]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; @@ -8592,7 +8634,7 @@ in with self; { eff2 = derive2 { name="eff2"; version="1.0.1"; sha256="0872xms2i8k128h3cn2n9dwa4apdyvxhb1h759cmyw63fw4wm8kx"; depends=[igraph pcalg RBGL]; }; effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; }; effects = derive2 { name="effects"; version="4.2-2"; sha256="0nlj79am9a1yg737dhfa8dj1kj2hly9pfknmphsbcvlgxqn35vig"; depends=[carData colorspace estimability insight lattice lme4 nnet survey]; }; - effectsize = derive2 { name="effectsize"; version="0.8.1"; sha256="0rc4kkqp45wa5zsgyrg6wfkrz9ynwa7j71hl0swzvcp4wg2lsp06"; depends=[bayestestR datawizard insight parameters performance]; }; + effectsize = derive2 { name="effectsize"; version="0.8.2"; sha256="1ibkvvpkd4md73d53823wnwzk3iqi1k4vr99jkyiiybcn6mv5qkc"; depends=[bayestestR datawizard insight parameters performance]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.8.1"; sha256="1m5ch2g77f4ldbxhzp2ls1pga8hq7ggkz1xs8a90h0s09rj0gd7w"; depends=[]; }; @@ -8602,7 +8644,7 @@ in with self; { egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="2.3-2"; sha256="1hb7a78db97xz5hm311d60n2kg1wdlrf57vg4ixamqihyrcs5r4v"; depends=[BH boot coda lattice numbers Rcpp RcppEigen RcppParallel rootSolve rstan rstantools StanHeaders]; }; egor = derive2 { name="egor"; version="1.22.5"; sha256="03bsqldkvwfxwk5hy74ilhkkyhpd6sx7x39ayl0ap354gmyfmzgg"; depends=[dplyr purrr rlang srvyr tibble tidygraph tidyr]; }; - eha = derive2 { name="eha"; version="2.10.0"; sha256="03lxrdwf6kkjl6qh21xfj13956wd0b85hcj6grprnjh3hwv73m14"; depends=[survival]; }; + eha = derive2 { name="eha"; version="2.10.1"; sha256="132n988b4wpx5m2bilc9cqgpxf8j8gkhymh3xvbp88am6iy8155f"; depends=[survival]; }; ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; ehelp = derive2 { name="ehelp"; version="1.2"; sha256="0264nx4bidrbwhlxx9llarvh4zb3xnzln8km14823q1hclkpm2fq"; depends=[]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; @@ -8620,9 +8662,9 @@ in with self; { eive = derive2 { name="eive"; version="3.1.0"; sha256="1livknaplgbw0338kz10hgxrwbm05hhggi5h9klfc2gpw62z6hhs"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eixport = derive2 { name="eixport"; version="0.5.4"; sha256="0q6djpp6x0hzzk2sh36rfgzch3n6v4af9knvwv0fnlh72n2cj0b8"; depends=[cptcity data_table ncdf4 raster rgdal sf sp]; }; - eks = derive2 { name="eks"; version="1.0.1"; sha256="0vl5q4n3jk4zx8wgq5cx6x3yrr8ivbm0ha2z0rsicf7c6ky9pmvj"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; + eks = derive2 { name="eks"; version="1.0.2"; sha256="101dq01ngixaab7zj09bcy7jyaa27qf9rb3jsz03j1mrapzipnlv"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; - elasdics = derive2 { name="elasdics"; version="0.2.0"; sha256="059mcnf8ym8xjibs0lkr7drvwls3qcfivlls10yl7ss4ial324qp"; depends=[numDeriv]; }; + elasdics = derive2 { name="elasdics"; version="1.1.1"; sha256="1zpwkch4h463d1ad681iid668909w74xb0wyfjqshdvznb4pxp5i"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastes = derive2 { name="elastes"; version="0.1.6"; sha256="1j28vqiflc6ij2yp9cniqs3vcjm597mrzdjvfg3235r9m6gf5yij"; depends=[elasdics mgcv orthogonalsplinebasis sparseFLMM]; }; elastic = derive2 { name="elastic"; version="1.2.0"; sha256="0k98ziacyxl1pyhyynmswcncqwl0a05sawypncdpdd9xr77nvgi6"; depends=[crul curl jsonlite R6]; }; @@ -8631,6 +8673,7 @@ in with self; { elec = derive2 { name="elec"; version="0.1.2.2"; sha256="1qc2hzbkmxvk4zrmdr935klhxvvdc7rmximqybb5aammd351qh2a"; depends=[]; }; elect = derive2 { name="elect"; version="1.2"; sha256="1hjqhmdklspssa75x8xdhv2narqgw80qh259hyfwfgnvva97w2ja"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; + elections_dtree = derive2 { name="elections.dtree"; version="1.1.0"; sha256="1j0knxi2vv65pizpz8v26az9k422msn8i7d55hyzy8h1q1bbcy8y"; depends=[R6 Rcpp RcppThread Rdpack testthat]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.2"; sha256="05wxzfgh0f3n6w8ah32q2v4f67g6w4qri4dv1linmlax77clv9fn"; depends=[data_table dplyr haven magrittr readr]; }; electivity = derive2 { name="electivity"; version="1.0.2"; sha256="0clxsn9zkpdlq9jgq029ag310ji0hd0l23wfyqh8gkkj0091ip5a"; depends=[]; }; electoral = derive2 { name="electoral"; version="0.1.3"; sha256="0r15ghnblp5f2g9hpw187clfpj1cgplqyn9mhyvlcmz5ql60glsj"; depends=[dplyr ineq tibble]; }; @@ -8653,19 +8696,19 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; - emayili = derive2 { name="emayili"; version="0.7.11"; sha256="1x9wjvb314995bi0sv06p62n5x2b0lqdjjdcm2in8gdljnah0vqs"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; + emayili = derive2 { name="emayili"; version="0.7.13"; sha256="13ndi1khnsf75xrh04jy9jpqi94rwnwlyp3jp8b8jyyd1pplhxlw"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; embed = derive2 { name="embed"; version="1.0.0"; sha256="1yvw24yi4j1xlbm6w1g49mcp6wqnn69191sys1fr8wsvrag79gfn"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="8.7"; sha256="1fayl1wxpw9903psrjichrbf6rx38d7shnsjpxdwljw67g6pr5g7"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; - emdi = derive2 { name="emdi"; version="2.1.2"; sha256="072izm7rs728zhwa3zf30kklfy3q8xldhw62bc274dwd7axms5yh"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; + emdi = derive2 { name="emdi"; version="2.1.3"; sha256="0s190p6zhsj2yc1xy1px5sk8aqn6q8b26g7zsnpa9rvih9h2667r"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; emdist = derive2 { name="emdist"; version="0.3-2"; sha256="05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh"; depends=[]; }; emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.5"; sha256="0b6kjwx2lsz5rj8819n71nvvchjpys90ns5n6gcgfwn5afzfdvql"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emmeans = derive2 { name="emmeans"; version="1.8.2"; sha256="02fj957f67m1ik9n31h1p726hjnlhwlvd1wz93glfrcagm2p6nbq"; depends=[estimability mvtnorm numDeriv xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.8.3"; sha256="004fd6kzky44xixd87q2nl1sn37krmqfas5gsylbc1cbrwnjzxlz"; depends=[estimability mvtnorm numDeriv]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; - emoji = derive2 { name="emoji"; version="0.2.0"; sha256="06bsz0hsaqa2lzqpyqhsfp07p8ri5frvhiza0s8aali7w3cr2szh"; depends=[glue stringr tibble]; }; + emoji = derive2 { name="emoji"; version="15.0"; sha256="1xscypzz17a7nrajnl7isy2nrm9cyr97l0mi9vp0daqvzgyfajba"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; @@ -8681,7 +8724,7 @@ in with self; { encryptedRmd = derive2 { name="encryptedRmd"; version="0.2.1"; sha256="0agd5lqrmdi50r9fl25njwsvg91nqsvj4h6c639vfhxx7p9y9nfk"; depends=[readr rmarkdown sodium]; }; encryptr = derive2 { name="encryptr"; version="0.1.3"; sha256="01gsimhrb9c7k5d9h5dbvm4h9i7fc9vzi8wgqb5f191ki27fsw9w"; depends=[dplyr knitr openssl purrr readr rlang]; }; endoSwitch = derive2 { name="endoSwitch"; version="1.0.0"; sha256="1cj4skk317ppnayk1ph63vll49vs74fljc25cn1iviwgjq64ly0k"; depends=[data_table maxLik msm]; }; - endogeneity = derive2 { name="endogeneity"; version="2.0.1"; sha256="1a71w8pqi54g4m814r7z7ywd4fkhlnvrxbrb7s5zlfb5r829b69h"; depends=[MASS maxLik pbivnorm statmod]; }; + endogeneity = derive2 { name="endogeneity"; version="2.1.2"; sha256="1dmb3gnkb6nxvcyzh7vhh0ra8164b337ir7higc5d3dmmssn81yy"; depends=[data_table MASS maxLik pbivnorm Rcpp RcppArmadillo statmod]; }; endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; endorse = derive2 { name="endorse"; version="1.6.2"; sha256="16cbqg3z71c36j2zzw3xr09p6kpjwim7610sss1ayjh3xs0isa2l"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="2.29"; sha256="0dqzh2blb2h8ngchvfvnzx0gmilvx9ydvzqwfy4d9f58ixybn4d9"; depends=[ggplot2 pastecs]; }; @@ -8691,6 +8734,7 @@ in with self; { enetLTS = derive2 { name="enetLTS"; version="1.1.0"; sha256="1lah9ai9skshz0rq3r1smvy69j443m22h1dihl42gy2568998q4v"; depends=[cvTools ggplot2 glmnet reshape robustbase robustHD]; }; english = derive2 { name="english"; version="1.2-6"; sha256="1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; + enmSdmX = derive2 { name="enmSdmX"; version="1.0.0"; sha256="1j0yz5s7c7sk8sk6scb389py64r6f3fqbxq0a1bi1z4ddzmiaviw"; depends=[boot dismo doParallel foreach gbm ks maxnet mgcv MuMIn omnibus randomForest scales sf terra]; }; enpls = derive2 { name="enpls"; version="6.1"; sha256="12088v9xnj5b3dlakqz1hbzxz4mdai7xi7s2fpx8lj3y3lx7znmb"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="3.1"; sha256="0ad7jp398prvmm2fym07268qhv40mg67dx55ml4ayqkwxwffr1i9"; depends=[curl ggplot2 httr rjson]; }; enrichwith = derive2 { name="enrichwith"; version="0.3.1"; sha256="05fhx323ani86wdxbjp8dgw4d1iq4kr1887646w072a6iq93bwhm"; depends=[]; }; @@ -8725,7 +8769,7 @@ in with self; { epcc = derive2 { name="epcc"; version="1.4.7"; sha256="0j4cb17gvwsaacmhvm8qp5chr384kl7gj6089gjrc2hqi6kjr0rx"; depends=[cowplot deSolve formattable ggplot2 httr nls2 proto raster readxl rgdal rlang sp]; }; eph = derive2 { name="eph"; version="0.5.1"; sha256="12j8qmscsz381i9fs3slva2wl7pk7zxa38shaj4m595lswsixvi8"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.2"; sha256="0430mwnaa0qamdyvmwkh37ic0kp4hq8mr5nxkc97mhhl7djw0y92"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.52"; sha256="1jgbxl787rfqrr9jr7yzsclx1s3lr3ys2w5kg59dj8zglm0csbwj"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; + epiR = derive2 { name="epiR"; version="2.0.54"; sha256="0x8h4ry4dx01s0rvihv7qjdyhdgncjip10xi13iac6ra910znzdr"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; @@ -8735,7 +8779,7 @@ in with self; { epigraphdb = derive2 { name="epigraphdb"; version="0.2.3"; sha256="11ja2r024a4sfk6xjhwn2mj4fz2msf6jx85w3cxr2hvp9sl3zgc9"; depends=[glue httr jsonlite magrittr purrr tibble]; }; epikit = derive2 { name="epikit"; version="0.1.2"; sha256="0b9kc7qr7nkafmak60pyj7hln19w4zp33pk5y48qmfsxgarl6pv3"; depends=[binom dplyr forcats glue rlang scales tibble tidyr tidyselect]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; - epimdr2 = derive2 { name="epimdr2"; version="1.0-7"; sha256="1gxbp6vqk5124pi6xq7ga8dd9456b3idq2qm8wviryc1d05dqfih"; depends=[deSolve ggplot2 phaseR plotly polspline shiny]; }; + epimdr2 = derive2 { name="epimdr2"; version="1.0-8"; sha256="02iiam536jfd1wpr3glrksdpx0lqdh4k21ayy7igkv71p4y071i9"; depends=[deSolve ggplot2 phaseR plotly shiny]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; epinetr = derive2 { name="epinetr"; version="0.96"; sha256="0jg8pwbxlgrk7mqawsrifk724pi5qn0amh6x2fq54a0hmqdpdjns"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; @@ -8745,8 +8789,8 @@ in with self; { epitools = derive2 { name="epitools"; version="0.5-10.1"; sha256="0jqn3pas4lsans50jwakmvpyc7m7x0kxq6dzyckd3vgww56qa65l"; depends=[]; }; epitopR = derive2 { name="epitopR"; version="0.1.2"; sha256="0bqj62jl48pql7dbmq96fgs0pza3krycd9i6fj0sjz7yxg4i46q6"; depends=[Biostrings dplyr fs here httr janitor purrr readr seqinr stringr tibble tidyverse]; }; epitrix = derive2 { name="epitrix"; version="0.2.2"; sha256="1rqpvdky002h6mz636b77l4kd0im16pww62l6vnwh83si1m9pkki"; depends=[distcrete sodium stringi]; }; - epitweetr = derive2 { name="epitweetr"; version="2.0.3"; sha256="0wxzhhx7l0w5g6zihglxhgzibj69pj929zsh54zp5qg1jr00znyj"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr magrittr openxlsx plotly plyr readxl rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse tokenizers xml2 xtable]; }; - eplusr = derive2 { name="eplusr"; version="0.15.2"; sha256="0zcxmgqpc9v50b4dl1ksadrh4g5dpk9f5icv757pr08sp55qkrmv"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; + epitweetr = derive2 { name="epitweetr"; version="2.2.13"; sha256="0vv4y1c8nfcdv2hmv6vvi5jh6ykrbvna2p2gwpcl9q4j7b4wp9jc"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr lifecycle magrittr openxlsx plotly plyr processx readxl rgdal rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse tokenizers xml2 xtable]; }; + eplusr = derive2 { name="eplusr"; version="0.15.3"; sha256="04qbvawxzily2cd76lahi3nba49c2j4skjvqk8xy2rin7p0w6fxs"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epm = derive2 { name="epm"; version="1.1.0"; sha256="0vr1qydafkj0xlm395alpjkck6ahspi89pjk3zp31f2i6cx71hcx"; depends=[ape pbapply Rcpp RcppProgress sf terra viridisLite]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; @@ -8758,7 +8802,7 @@ in with self; { epubr = derive2 { name="epubr"; version="0.6.3"; sha256="1cpsxx02qcj3brr3ddy8dbnaf6wxf42s9y3kx8fq5ki3pmlwry7g"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; epwshiftr = derive2 { name="epwshiftr"; version="0.1.3"; sha256="11vfs2r2fzbdd3r0s8ikafgq9ins06ym73wqxyijz60h75py4ic7"; depends=[checkmate data_table eplusr fst future_apply jsonlite progressr psychrolib rappdirs RNetCDF units]; }; epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.12.0"; sha256="0gf7xs66j6x7yf1g7h1krig4956c2f86q9lcm9zx29dimyrq4yas"; depends=[]; }; + eq5d = derive2 { name="eq5d"; version="0.13.0"; sha256="1l4867x00iz6wq1w7glcpbmsyxy881wpng3hjf3pmr5yb8lhqmxm"; depends=[]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.6.1"; sha256="09wh4907vf54z3g2a1i1j4m5vkaz97jp3qyrmxbg0bbbq0c68ffg"; depends=[lavaan]; }; equatags = derive2 { name="equatags"; version="0.2.0"; sha256="039v1lj8ydw3lji8ycklbprd569f7g0lc11sb2ij262wlr0prm1m"; depends=[katex xml2 xslt]; }; @@ -8769,25 +8813,23 @@ in with self; { equivUMP = derive2 { name="equivUMP"; version="0.1.1"; sha256="05ihbr6dd9qv89ll90ynk4g3d3xy2w5q0m696djfa63f1x92c01w"; depends=[]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; equivalenceTest = derive2 { name="equivalenceTest"; version="0.0.1.1"; sha256="1lr1qc4mv8f9hwqidj1rwhxqm1fb8cf1hnb1k32xpdqwzsxbfa47"; depends=[cubature polynom Rdpack rootSolve]; }; - era = derive2 { name="era"; version="0.4.0"; sha256="1r726zcaayg6chh1466z9q4y3vd1z5hbz3kvqbfp6dqj7dx8qhgw"; depends=[pillar rlang vctrs]; }; + era = derive2 { name="era"; version="0.4.1"; sha256="10hrbdxdvfgz8namczzfwwdhzwf5gsfv6jp9ikiasmjdlyn9jpps"; depends=[pillar rlang vctrs]; }; erah = derive2 { name="erah"; version="1.1.2"; sha256="0dyjb2ja5199z8is11in11a95l2dbhaa2qj42pikh0ydk47qhd6v"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; erer = derive2 { name="erer"; version="3.1"; sha256="03pdq3p5c5f20959hgk5q2cx5x10bpgf0qg4z1nvsf31vc5ni77v"; depends=[lmtest systemfit tseries urca]; }; ergMargins = derive2 { name="ergMargins"; version="0.1.3"; sha256="0liq64qjd3b0v5pcsvfmvmv7dr0ak4ld2mbin8w2wcdnvpfajjy5"; depends=[btergm ergm Matrix network numDeriv sna statnet_common]; }; - ergm = derive2 { name="ergm"; version="4.2.3"; sha256="124jmrjqwiia542dn33f15r4phvadhfch4rpxdr5hi58sirm7l9m"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr rlang rle robustbase statnet_common stringr tibble trust]; }; + ergm = derive2 { name="ergm"; version="4.3.2"; sha256="0dghylkwy7acwjpydkbxgfp4sfs9gcgl9l038rm0393cbyfs1phq"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr rlang rle robustbase statnet_common stringr tibble trust]; }; ergm_count = derive2 { name="ergm.count"; version="4.1.1"; sha256="0cj9jdxxpkgvs658nxxndd9pbxb7l52vzhipkjiimd6q99hr6s24"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="1.0.1"; sha256="153xdry9y2wyqkq2hacy3gh4h6jwwyn0p0dakxmrrpfsa1my5h9f"; depends=[dplyr egor ergm network purrr RColorBrewer statnet_common survey tibble]; }; ergm_rank = derive2 { name="ergm.rank"; version="4.1.0"; sha256="1ivwqlyx48smm9dmam9z0x6yqhmy1ypmmhzfhs5j3pq5vfwfc87c"; depends=[ergm network statnet_common]; }; - ergmclust = derive2 { name="ergmclust"; version="1.0.0"; sha256="18vx02vr2wi0gw09g4hxb8glf38y06v4a0c6q666qv8bgcb0pgkw"; depends=[igraph lda MASS quadprog Rcpp RcppArmadillo viridis]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; - ergmito = derive2 { name="ergmito"; version="0.3-0"; sha256="0ajfx8g31p0lf0ajrgssb9lkhs1bxkz19z3q99l500znlivc2fy2"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; }; erify = derive2 { name="erify"; version="0.4.0"; sha256="014q4crfa92i4fb4mrbl68ai0l8asjwwnv3l2m11gfnny41p4bks"; depends=[glue]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; err = derive2 { name="err"; version="0.2.0"; sha256="1915b0vmqdd8whwdrqjphld1jaxawh5b7di6wf7q3sx779lblsrs"; depends=[]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorist = derive2 { name="errorist"; version="0.1.0"; sha256="0zq5h2wffn9d3f3blzh736478k91smlvz5hxy55hcjqffpxcp4ah"; depends=[searcher]; }; errorlocate = derive2 { name="errorlocate"; version="1.1"; sha256="1p9a5nc0ckbdapahf5nkxnsgwvqh2llv3kc2wzwawn131rdaj1qi"; depends=[lpSolveAPI validate]; }; - errors = derive2 { name="errors"; version="0.3.6"; sha256="1404314glbqnicrwnfzmxxf7l97pgrb2gjkgkwn100p0sj83kjdg"; depends=[]; }; + errors = derive2 { name="errors"; version="0.4.0"; sha256="15hmsyfcsjy33601a7v2r7sfk2kxbm4a8xwkgjppmf84vhpqplbx"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; es_dif = derive2 { name="es.dif"; version="1.0.2"; sha256="1swxg8mdp9jj9f0x0cawhhbx8gmmpsgqlbifx2v04a2vkgdkigqf"; depends=[]; }; esDesign = derive2 { name="esDesign"; version="1.0.3"; sha256="0lnz40d8s9pmxccsbd9g80n0k454xgicjfdpbfrq7rnyb4pdk9l2"; depends=[]; }; @@ -8802,7 +8844,7 @@ in with self; { eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; - espadon = derive2 { name="espadon"; version="1.1.1"; sha256="0blawgnw2zg3pyrzzfsf5iriqml0z5fhcws2pnah2b3pzl336q5w"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets sp]; }; + espadon = derive2 { name="espadon"; version="1.2.0"; sha256="06lri62bpv4hspvwwxq5r1qypj63jw9kshz4wplmywazf8bpif61"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets sp]; }; esquisse = derive2 { name="esquisse"; version="1.1.2"; sha256="180kdcqf93rkfzmjlysi53646ypkqi1r383n8p9jmj6xh9aag8rl"; depends=[datamods ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinyWidgets]; }; esreg = derive2 { name="esreg"; version="0.6.0"; sha256="0q8na05dq1gacpijv005bzan8skyzzhj8z00fzx46d27xdz7qisw"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; ess = derive2 { name="ess"; version="1.1.2"; sha256="1cmw20nn39ssyqiyn50w0ws28mq4cd26yhzr7mv97haaqjjjkv5h"; depends=[igraph Rcpp]; }; @@ -8812,11 +8854,13 @@ in with self; { estadistica = derive2 { name="estadistica"; version="0.2.2"; sha256="05ad1wfy4682icprp7jgx09p8azjnk8wlxhpzjdkm6mz0ix7zqp5"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr plotly rio shiny shinydashboard tidyr tidyverse]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.4.1"; sha256="090i1xwdp4fwj8jr8nk13w49516lfkk5mq1w7l0lff9g8lgaynn6"; depends=[]; }; + estimateW = derive2 { name="estimateW"; version="0.0.1"; sha256="0fgbyfnxxs6kp9p17ljvj72q5vd4xn7kwh4zbmzjx45cdq101bjv"; depends=[Matrix matrixcalc plot_matrix R6]; }; estimatr = derive2 { name="estimatr"; version="1.0.0"; sha256="1px9j7nlxgx5g7fi57hpx0fsjxhkwjcxbkic0lqf1m3pgxxcxj59"; depends=[Formula generics Rcpp RcppEigen rlang]; }; estimraw = derive2 { name="estimraw"; version="1.0.0"; sha256="0z591mblbzc3qv9pyv8zn0r5r3d8f1l02sxdc649gl1lb40kalz0"; depends=[dplyr]; }; estmeansd = derive2 { name="estmeansd"; version="1.0.0"; sha256="1jmi78gmddhqpg3n7jywkbsq8amxa641s8rhzzg6jmmh4w09dg9s"; depends=[metaBLUE]; }; estprod = derive2 { name="estprod"; version="1.2"; sha256="0pnpg8w6i1dmkcn6afj2jsm5mzvbxka80np1bldcxgmylrp5s35p"; depends=[boot Formula gmm lazyeval minpack_lm]; }; esvis = derive2 { name="esvis"; version="0.3.1"; sha256="0bb91khnrn8v3d6hbbin72032w7w8p0jchbr0bzwyfq5f6l4hwka"; depends=[dplyr ggplot2 Hmisc magrittr purrr rlang sfsmisc tibble tidyr]; }; + et_nwfva = derive2 { name="et.nwfva"; version="0.1.1"; sha256="01jhy5043axgmv51ri2k3gl1shvsh569h9xy4y1ya1qjpdlbv0ky"; depends=[]; }; etable = derive2 { name="etable"; version="1.3.1"; sha256="17dga1hz29jjdclhhwn1hrvlkdfbcbqmk233vc00s59pbmgsav06"; depends=[Hmisc]; }; etasFLP = derive2 { name="etasFLP"; version="2.2.0"; sha256="1030l3g6hghgcmji934g5pc01p2hld09mv3zna58xzzb4wsmz167"; depends=[fields mapdata maps]; }; ether = derive2 { name="ether"; version="0.1.6"; sha256="1f3phh5vdfvlxqrpzsn6ysz0q3mbhr862fzsd3sp8m8qhry86cbx"; depends=[dplyr httr jsonlite Rmpfr]; }; @@ -8830,8 +8874,8 @@ in with self; { etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; eudract = derive2 { name="eudract"; version="0.10.1"; sha256="0qznnfflmxgx6ic5lfw0vcv1jm6hs7g3srly90vj70adjcb49sbd"; depends=[dplyr httr magrittr tidyr xml2 xslt]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; - eulerr = derive2 { name="eulerr"; version="6.1.1"; sha256="0lldp2319qd08y87f862gx8a77rvikcnkmdl9xgx4glynfs3hk19"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; - eurlex = derive2 { name="eurlex"; version="0.4.2"; sha256="0xyxdn0qqp7irwj0g6fpm16c1qr88l7bq0s3bjb8anrk0fisfghp"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; + eulerr = derive2 { name="eulerr"; version="7.0.0"; sha256="16a84a2xgv1iqsir0hzn6qclljni4f3prpycb7qpp06vrd0yn8lw"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; + eurlex = derive2 { name="eurlex"; version="0.4.4"; sha256="0ncbzixrr0fxjgyhwjwa2y8aqpq7c9m9v3g733n2zg88jpkqqr0q"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; eurocordexr = derive2 { name="eurocordexr"; version="0.2.2"; sha256="081p9qs09xif2cck0gmmqgzaly1r2p77kla2nhcvjgxgdylbsdkd"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; eurodata = derive2 { name="eurodata"; version="1.5.0"; sha256="00h8pnfvg5bq7174pzj7773xcm2h2gw88kjh9skxjs8zhrqafipk"; depends=[data_table magrittr memoise R_utils Rcpp stringr xml2 xtable]; }; europeanaR = derive2 { name="europeanaR"; version="0.1.0"; sha256="11cr8n64yv50zwib9wkvk1j43p9a1cmxmzznxykczv43l193kjg7"; depends=[data_table httr jsonlite magrittr Rdpack]; }; @@ -8842,7 +8886,7 @@ in with self; { evabic = derive2 { name="evabic"; version="0.1.1"; sha256="0f34shsacf9lyb2hlp2f0nhqy2ihy1zqg52npx8ap2li0s4y0x24"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="0.3.0"; sha256="16xx6blq51hck04zxvya4iyv9d6i1zkrqyfg10vc0kc3626vnlrn"; depends=[dplyr MASS Matrix quadprog]; }; evalR = derive2 { name="evalR"; version="0.0.1"; sha256="0gb9bi9kfpqv0asbrcz2kdf1grxbjipdq97jmlgbzr5rn9jski01"; depends=[Rcpp]; }; - evaluate = derive2 { name="evaluate"; version="0.17"; sha256="0qx9dgwcz0xmf4k8hy45p50dhb3nldhmhmg5y0d92rxr9k4l7is9"; depends=[]; }; + evaluate = derive2 { name="evaluate"; version="0.18"; sha256="0dmznan8zajzb5f31yabcgpkinlqczz59i1rg9f6sa5cjzffqkkz"; depends=[]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; evd = derive2 { name="evd"; version="2.3-6.1"; sha256="0wc95hfj0gwkyghipdrhwd3s6q2agh9x2wy6y7dr6mjw7wnmjb36"; depends=[]; }; @@ -8861,19 +8905,20 @@ in with self; { evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; evmix = derive2 { name="evmix"; version="2.12"; sha256="02rabc9snci00s1x7h0svfr66lmw1wjcdg0149wc52mnccsdaivf"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; - evolqg = derive2 { name="evolqg"; version="0.2-9"; sha256="1y1pq2hdilqkj6hk02km9aaaynz1calcw00r5k1rxlc4wfq1wx70"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="2.0.0"; sha256="0l81d48zvvnbxlx1mj4qwga1kdzk05pzdvsp4ghi93pzzynfqn9s"; depends=[ape coda lme4 Matrix]; }; evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.3.0"; sha256="0r8b5vq0qzp3f0dasxmrngldqlymca90sj019rzs1a0qf28wlgbr"; depends=[coda doParallel doRNG foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; + exDE = derive2 { name="exDE"; version="1.0.0"; sha256="15z1gdbpnps9idlw8bw3n0wsayjpvv0f5mb8hihi0kvbys8q4sfa"; depends=[deSolve expm MASS]; }; exact_n = derive2 { name="exact.n"; version="1.1.0"; sha256="0sjiv55455274d2gfhkkdwbpq15wka947ajn9gyypfyc4fmzbqcn"; depends=[]; }; exact2x2 = derive2 { name="exact2x2"; version="1.6.6"; sha256="1c7lsl2zvnighzylp7z3w74rl7p8zfg0fphw5fxv2i0m8sslzq73"; depends=[exactci ssanv]; }; + exactLTRE = derive2 { name="exactLTRE"; version="0.1.0"; sha256="0fhzymvsmp1hcq32nwka745jhbf51iyb9hp6ix9rm88kyclcwhrl"; depends=[matrixcalc popdemo]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-35"; sha256="1qv9i57chhz8xiv0j8r47rbigyqs72fa7ssz99inyc0s8gzskd3y"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.4-2"; sha256="08phqmpj7f6mjbwfnykqmfmg7g9h6ksj3hyryn79d7kwxyh994i7"; depends=[ssanv testthat]; }; - exactextractr = derive2 { name="exactextractr"; version="0.9.0"; sha256="13di9s0lv9kdv2p3hp9ksrr0rh98z6m998pj5a1xq9zl6iakankh"; depends=[raster Rcpp sf]; }; - exampletestr = derive2 { name="exampletestr"; version="1.6.5"; sha256="144rfi83g79xhw3v5vn4qfqmxixy9pk2ir8dm42qk0jhd9v2awng"; depends=[checkmate fs magrittr ore purrr readr rlang roxygen2 rstudioapi strex stringr styler usethis withr]; }; + exactextractr = derive2 { name="exactextractr"; version="0.9.1"; sha256="18glacc1v0kj65g6fbqnhvgg83sr334chdfll7nhjnx44my3dkzh"; depends=[raster Rcpp sf]; }; + exampletestr = derive2 { name="exampletestr"; version="1.7.0"; sha256="0853p0w4qcd76h964bxvmlnzbhgxp7cv057lczgw0y4h73hk85fq"; depends=[checkmate fs magrittr purrr readr rlang roxygen2 rstudioapi strex stringr styler usethis withr]; }; exams = derive2 { name="exams"; version="2.4-0"; sha256="0g2m51i7lf62hy4v9ns3l7bv3jh367fwi6hgz94iw7n8pjhkh47v"; depends=[base64enc knitr rmarkdown]; }; exams_mylearn = derive2 { name="exams.mylearn"; version="1.4"; sha256="0cswbynd1acrvdwhgg3vlgl80v0qk22kg2hacbc6y08s4367srly"; depends=[exams glue pkgbuild stringi stringr xml2]; }; exams2learnr = derive2 { name="exams2learnr"; version="0.1-0"; sha256="0laimld71p3w2r01d0xm7ly7brvahhagmx4972amv4xvn66y3xv4"; depends=[exams knitr learnr rmarkdown]; }; @@ -8889,30 +8934,31 @@ in with self; { exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; exiftoolr = derive2 { name="exiftoolr"; version="0.2.0"; sha256="17s4rk3fn4lh1hqnayya32rcb28j59hpq4rqfb8w6m96zxx8l44n"; depends=[backports curl data_table jsonlite zip]; }; - exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expDB = derive2 { name="expDB"; version="0.1.0"; sha256="0h7f9127vrd45lg7k0bkgq3cghxwv2z11p4pak20pakk13g82hj4"; depends=[DBI dplyr lubridate magrittr png readxl reshape2 rlang RSQLite stringr tibble tidyr tidyverse weaana]; }; expSBM = derive2 { name="expSBM"; version="1.3.5"; sha256="0k8nkwqrcmmhv0x8a2np1rm5cyc9glyvndwdbnp03v0wrg8121sw"; depends=[blockmodels gtools mclust Rcpp RcppArmadillo]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; expectreg = derive2 { name="expectreg"; version="0.52"; sha256="1cb2k3ndzxw9sd9znmmd0f2pfpa1lvvvm9vvj3z44b4vcb2lf9vl"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; experDesign = derive2 { name="experDesign"; version="0.1.0"; sha256="1v2j3jyxyzwkzc3y5n6pzd31yigkfwcmf12df3104m3kn86iq81r"; depends=[]; }; + experiences = derive2 { name="experiences"; version="0.1.1"; sha256="1fqcq9jaw79nafm4qqbwm9qg2xlscjcyx3rmk7677xxrz7kywn94"; depends=[cli dplyr huxtable magrittr scales stringr tibble]; }; experiment = derive2 { name="experiment"; version="1.2.1"; sha256="0lzxwpcz7m4wngfw0wyazkhh4icn9zjd8jmgf6ym2zzk3xc4dji1"; depends=[boot MASS]; }; experimentr = derive2 { name="experimentr"; version="0.1.0"; sha256="0ji2031r108rzna00zhsh70kfcnhcscz0an0jv0vvj00hrakl0yr"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-8"; sha256="1cn6c84pqf8bgk109qm4znn186h6s6cpll3d11cw144h0vh4yr8j"; depends=[]; }; - expirest = derive2 { name="expirest"; version="0.1.3"; sha256="0bjwia1fvavids4yfac085wqg6sraxs30vwmk6jbls5r0ki1ijva"; depends=[ggplot2]; }; + expirest = derive2 { name="expirest"; version="0.1.5"; sha256="08gwy1fikj7kg7h6fc7w15621jc0prdqdhzx14ad6dvdi5rd33gv"; depends=[ggplot2 rlang]; }; explor = derive2 { name="explor"; version="0.3.9"; sha256="0sfpw9lgpr9hyn93jwxhijbfqnj466wc5ilszki2r7ziik3nb79i"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; exploratory = derive2 { name="exploratory"; version="0.3.13"; sha256="164ykw514gfj185ckg3p8jfn7y5al12iab34fqyrkrqpj84gf1qd"; depends=[data_table DT ggplot2 ggridges lemon lm_beta mediation remotes shiny shinydashboard weights]; }; - explore = derive2 { name="explore"; version="0.9.0"; sha256="0hi4aqjgj66v69ip821jd7l7c8viq39g9mp9jhxy8h79cf6k65br"; depends=[assertthat broom dplyr DT forcats ggplot2 gridExtra magrittr MASS rlang rmarkdown rpart rpart_plot shiny stringr tibble tidyr]; }; + explore = derive2 { name="explore"; version="1.0.0"; sha256="0ihg4yd9k979aidjmcnvy65zlwqpyssw1d7p8i0d8z7aim7g2kqd"; depends=[assertthat broom dplyr DT forcats ggplot2 gridExtra magrittr MASS rlang rmarkdown rpart rpart_plot shiny stringr tibble tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; expm = derive2 { name="expm"; version="0.999-6"; sha256="1p5dapwv8ycxaysgi6imnby04i4kh1c5a2czqa4wygz0s8pr2y9c"; depends=[Matrix]; }; + export = derive2 { name="export"; version="0.3.0"; sha256="1b238d6aa1m2pcg7vdjbrvjj748j3fim5zvhng7lgkag2rzjqa56"; depends=[broom devEMF flextable officer openxlsx rgl rvg stargazer xml2 xtable]; }; expp = derive2 { name="expp"; version="1.2.5"; sha256="0hb4392biyy85gs7af4p9m7r51ijmqr7wp7c7b0i7lzdf1bnd7fz"; depends=[deldir rgeos sp spatstat_geom spdep]; }; expperm = derive2 { name="expperm"; version="1.6"; sha256="0cybna0q3qn3slyc4lv5rby4pr0xkwq0h6n7hl1zhsaqv4c2zc5b"; depends=[Rcpp]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; - expss = derive2 { name="expss"; version="0.11.2"; sha256="12hg75k1mmbkf9rcdz9c13c36cjh7x2zj0mpwh3kwk6jv63cqn1c"; depends=[data_table htmlTable maditr matrixStats]; }; - expstudy = derive2 { name="expstudy"; version="1.0.2"; sha256="1c83lad5pva1wsbgmdcbl10c3xnkmiklpjk6hiik0p79n8vqv2mm"; depends=[assertthat checkmate data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; + expss = derive2 { name="expss"; version="0.11.4"; sha256="1c7a50dv265872ng891jcipa5anrq5c5xpx81rix85l95mzwfzix"; depends=[data_table htmlTable maditr matrixStats]; }; + expstudy = derive2 { name="expstudy"; version="1.0.3"; sha256="0xvrwhgfwddgn943shpmh8ifsa7hyandrpgp1yg9n9iqwmmddg77"; depends=[assertthat checkmate data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; extRC = derive2 { name="extRC"; version="1.2"; sha256="0mkvic9nr0asd0g04nlfiy81d7am9a3i65ibxyvbdwsxnf92p8ya"; depends=[MASS]; }; extRatum = derive2 { name="extRatum"; version="1.0.4"; sha256="1w4xfr7ps565xczmn6pr7g4551rj28df1j0y9vckvxdbb4dk1p11"; depends=[dplyr sf tidyr]; }; - extRemes = derive2 { name="extRemes"; version="2.1-2"; sha256="19q560prq02h3bwk01jb68693qb5bhsv8wiqhia7v5knm34qv8x7"; depends=[distillery Lmoments]; }; + extRemes = derive2 { name="extRemes"; version="2.1-3"; sha256="0h1w177vz3z58vbqrfbiqapf9z2qsd7gcbv8fnbyn0i5akfz1k71"; depends=[distillery Lmoments]; }; extdplyr = derive2 { name="extdplyr"; version="0.1.5"; sha256="1zbnp0h0lv1dr40dhdw6ii8rmc5lxcq4wjsm83xpd3y8x9xpglnl"; depends=[dplyr lazyeval tidyr]; }; extendedFamily = derive2 { name="extendedFamily"; version="0.2.1"; sha256="0h1wply55cjclhblxmb4pd9qmiwk8vha7vk0i00ab46n7dc1yqa0"; depends=[assertthat numDeriv]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; @@ -8922,13 +8968,13 @@ in with self; { extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extrafrail = derive2 { name="extrafrail"; version="1.2"; sha256="1yzbpzfqf1l0530m1qyw0c781rvyj3czfv5jxg0s4ss4srj2kzzb"; depends=[expint pracma survival]; }; extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; - extras = derive2 { name="extras"; version="0.4.0"; sha256="0c2r5b3fhwv2spvakxilz46pdv8q9b0s0sii2gl8zm2cv83zmsyj"; depends=[chk lifecycle]; }; + extras = derive2 { name="extras"; version="0.5.0"; sha256="1y9i2vxp06yy0p26n8l4ky9i5zwdhdny1nw62lk6h3yk4rn63qca"; depends=[chk lifecycle]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; extremeIndex = derive2 { name="extremeIndex"; version="0.0.3"; sha256="19zkqabk7n5v4nnwlkxbrym4rf1ljbpblggiqd9s9f6ylir417pv"; depends=[boot evd evir gmm]; }; - extremeStat = derive2 { name="extremeStat"; version="1.5.2"; sha256="1cq1wfjdq3kmcaygyd158g660hr3b7zbl7hy6sn7gcz83fycihnq"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; + extremeStat = derive2 { name="extremeStat"; version="1.5.3"; sha256="17l7ccnyg09dg9a3204b51axmj46gghmlqkd4kq6fsldmwic1zv6"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="1.0.2"; sha256="07gx6dp0kz4y1jn90hsfvkhn6k7i4flh7ghdz9v5nwda86f55q2s"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.3"; sha256="0ijha5zzmv3qr0czm4qxk28kg3ql5jh3nk9fr0flzl8d9n3z0jx6"; depends=[gWidgets2 gWidgets2tcltk]; }; - extremis = derive2 { name="extremis"; version="1.2"; sha256="1gvizxv1ay788a21qjslrmi7qdbr8s2ryibyri6sp7xdkaqiixsn"; depends=[emplik evd MASS]; }; + extremis = derive2 { name="extremis"; version="1.2.1"; sha256="11y3cb5z6vsrpdffdr44afz3is0ikxvpb81a8pwc7p8q63rxq4a2"; depends=[emplik evd MASS]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; exuber = derive2 { name="exuber"; version="1.0.0"; sha256="05p6izwcw3qr6rl9f0qj96g4inn1hlacy7mmnr1mh0vz9x4b2mig"; depends=[cli doRNG doSNOW dplyr foreach generics ggplot2 glue lubridate progress purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; eye = derive2 { name="eye"; version="1.2.1"; sha256="0la9hlpryqczi6v6pyjx2hdhhdgm3aijs45v1nj76a867zmf77k9"; depends=[cli dplyr english lubridate magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; @@ -8947,7 +8993,7 @@ in with self; { ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; ezmmek = derive2 { name="ezmmek"; version="0.2.4"; sha256="0x62nzs1kayv95a6ldav732v79gahrri2khy1w678rxbzfx5wkqy"; depends=[assertable dplyr ggplot2 magrittr nls2 purrr rlang tidyr]; }; - ezplot = derive2 { name="ezplot"; version="0.7.3"; sha256="07lndf2g4z6gcrg85linjiph04464k3ccxcw0n3zd75zxqbsrhfr"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; + ezplot = derive2 { name="ezplot"; version="0.7.5"; sha256="1706cb52pl9v7r3mrlcjvybb2b2r5x92sw7dmk1hk34w7wp4sifx"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; ezr = derive2 { name="ezr"; version="0.1.5"; sha256="0r4zq0864xpnmczg1zpaasi348j1fllrn0rqfa5fmjh245chcpd4"; depends=[data_table DT ggplot2 ggridges moments shiny shinydashboard weights]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.6-1"; sha256="04mw0blgpwdk6wdg8llrig43psgc0vb42cbimvzbnym8v503dsn3"; depends=[]; }; fAssets = derive2 { name="fAssets"; version="3042.84"; sha256="0aj3gjd54ajviikwh075bympw7dx2dcsgj5p8j96vx2qbbwjmgvb"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; @@ -8955,11 +9001,12 @@ in with self; { fBonds = derive2 { name="fBonds"; version="3042.78"; sha256="1yb5vyqj66m82xks5qi5cnsppylpprbk656z4lxzg30873hi8pcf"; depends=[fBasics timeDate timeSeries]; }; fCopulae = derive2 { name="fCopulae"; version="4021.84"; sha256="1c0alrrf85biqdwwdjcnn2k06jkhbligvlkgxbbj5jv3pjvf6s19"; depends=[fBasics fMultivar timeDate timeSeries]; }; fExtremes = derive2 { name="fExtremes"; version="4021.83"; sha256="0i0sabk5clk50r9qk69d0rqzkx95x3x9fnwqr8kx40d7v55s1blb"; depends=[fBasics fGarch timeDate timeSeries]; }; - fGarch = derive2 { name="fGarch"; version="4021.88"; sha256="10wrbcgi6v0cpy6rpwln42bhlwds1nm40mg6jwqv4pxzxhx4zlwi"; depends=[fastICA fBasics Matrix timeDate timeSeries]; }; + fGarch = derive2 { name="fGarch"; version="4022.89"; sha256="1v60k30lsdhpilpqwl9yl6mifr6aanwd8bq9byhl9wfmv5xp5a5l"; depends=[cvar fastICA fBasics Matrix timeDate timeSeries]; }; fHMM = derive2 { name="fHMM"; version="1.0.3"; sha256="1jv1pfaxmma3lq7igxdckl650hxa682v1brsq6h03h97jnhlyaw5"; depends=[foreach MASS progress Rcpp RcppArmadillo]; }; fICA = derive2 { name="fICA"; version="1.1-2"; sha256="0dqw3qybnpdnvhfh5inkc4011bzhsxvhpv8zzmkm3q5m6hkc6rlg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="4021.86"; sha256="011hrbwxf6v4abxsk4zw26awnh1nxmn3vgsx58awbx2jg6gcc9cj"; depends=[timeDate timeSeries]; }; fMRIscrub = derive2 { name="fMRIscrub"; version="0.11.2"; sha256="0n8vc5l7y14ifsw4lkgk9jvmplxfimi4l9a4spzw3daaqjk3cph5"; depends=[e1071 MASS pesel robustbase]; }; + fMRItools = derive2 { name="fMRItools"; version="0.1.3"; sha256="0c4gkjrki9126blaq1iy32q1rraw8kp3vwqf50ncwhhc7msjsf37"; depends=[pesel robustbase]; }; fMultivar = derive2 { name="fMultivar"; version="4021.83"; sha256="09jb2zhyji2yxn5ks1ghi33y83vlpkyacxqc0g223fl62ff2ac6d"; depends=[cubature fBasics mvtnorm sn]; }; fNonlinear = derive2 { name="fNonlinear"; version="4021.81"; sha256="1dpzg880wnja357qy3r4v5qbqhx7pkknd0rph75xvvn38p4rc0ca"; depends=[fBasics timeDate timeSeries]; }; fPortfolio = derive2 { name="fPortfolio"; version="3042.83.1"; sha256="1knyrjgfzwf4ppvnb5n325p5f6sidr6q53ss0zw8binhj22gli4y"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp slam timeDate timeSeries]; }; @@ -8970,7 +9017,6 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="4021.80"; sha256="1ycsa5mw43mdrp4xb39j8n0c393qmmnyc7ncbkcjgyms2xk8fhjh"; depends=[fBasics timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabisearch = derive2 { name="fabisearch"; version="0.0.4.4"; sha256="02xpndws34wh6kfk677kmpnhhxyxnwpg6asdfdn3wr44rcr7zk2v"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.2"; sha256="0wwxh76s2f3lgqj2k7l5dd8i215qq55y81pjwrf2fsq0ij99p9br"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.3"; sha256="0rjy5kj10sw2i9ghrsz67l40j7niw9mxm14kzg6prnc34200ki0n"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; @@ -8979,6 +9025,8 @@ in with self; { fabricerin = derive2 { name="fabricerin"; version="0.1.2"; sha256="0ynvnxzxx1iybyy5pvwfsj5y9jjixyrpji9vcl5fq5mjnpg8mpqk"; depends=[glue htmltools]; }; face = derive2 { name="face"; version="0.1-7"; sha256="08ri7mrp3az82x3yyydg7vrla8cdl8bxpcnxfv4cfdhxslks9qb7"; depends=[Matrix matrixcalc mgcv]; }; facebookadsR = derive2 { name="facebookadsR"; version="0.1.0"; sha256="1jj3kq7j4ifscj7vbhnp738ny866njkdxi1n0scc0cyxq8gc7glj"; depends=[jsonlite]; }; + facebookleadsR = derive2 { name="facebookleadsR"; version="0.1.0"; sha256="0azy822s5266vxk0fvxfkgl9i3q3djv7yh3w53znjjvfmmzj1qwz"; depends=[jsonlite]; }; + facebookorganicR = derive2 { name="facebookorganicR"; version="0.1.0"; sha256="0j4zx4gf3k81pv5kfq3ki44rfn1411n7840m1zih3hfvpdd761a0"; depends=[jsonlite]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; factiv = derive2 { name="factiv"; version="0.1.0"; sha256="1m43kg8mrlnkzs667s4a8c2jkfdgv2pjbwf45vf2w4nlp84camxx"; depends=[Formula generics]; }; factoextra = derive2 { name="factoextra"; version="1.0.7"; sha256="1allvdjhd3pq8xz30b1cymwcik5iaahghrjrlnn54cwkfhfg0kv2"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; @@ -8998,7 +9046,7 @@ in with self; { fairmodels = derive2 { name="fairmodels"; version="1.2.1"; sha256="0wxk2z5xh2dc9m9z6dz8cq911n4fd4a5zl03bg32nh05zq09xhwp"; depends=[DALEX ggplot2 patchwork scales]; }; fairness = derive2 { name="fairness"; version="1.2.2"; sha256="12jf2p8gmj5d6r9h9cwy208qwyqi606b54v0d99vpr171yijqvqk"; depends=[caret devtools e1071 ggplot2 pROC]; }; fairsubset = derive2 { name="fairsubset"; version="1.0"; sha256="0iw16fs2mb9p14vr34izw3sirbndyy8w07df3scy7gkkcx2nz2bz"; depends=[matrixStats]; }; - fake = derive2 { name="fake"; version="1.0.0"; sha256="0c2vgqm45sg2n0mjzi1qpvy63vm4k3bdymxfkifhw6z34f3lw3c3"; depends=[huge igraph MASS Rdpack withr]; }; + fake = derive2 { name="fake"; version="1.3.0"; sha256="09pl3q8q9pxmqbz19p4gi4xxqzyg99gs6wgd6wa80vjfc7xjqh87"; depends=[huge igraph MASS Rdpack withr]; }; fakmct = derive2 { name="fakmct"; version="0.1.0"; sha256="172g7gx6019bimfg4lm253sp9c7rcmm56c5wmxv1g575fr393n8k"; depends=[]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; @@ -9006,9 +9054,10 @@ in with self; { famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; familial = derive2 { name="familial"; version="1.0.4"; sha256="01k7pc2li1la0b0rxs2r2vb5k5qllhm6ykvs4xl455g6gg4pcbrc"; depends=[DepthProc ggplot2 matrixStats]; }; - familiar = derive2 { name="familiar"; version="1.3.0"; sha256="1m73pyhq28qxhz90l9l2hvxh9cisa42f2m9355fcfjwrmwff97xw"; depends=[data_table rlang rstream survival]; }; - fanc = derive2 { name="fanc"; version="2.3.5"; sha256="17zvd3y81vqc1cwk5xidgikjxclx36ydp3mj1ps0zxzl3dz5a50f"; depends=[ellipse Matrix]; }; + familiar = derive2 { name="familiar"; version="1.4.0"; sha256="1q8h7z4d545s1md5m37g2033yw0q7f2jdc0jf2mrf1hqj12vmvak"; depends=[data_table rlang rstream survival]; }; + fanc = derive2 { name="fanc"; version="2.3.9"; sha256="02w10lm4nggab5q16ld9xgpa4x4bygfiigs8m12yiah5ah1n5vk8"; depends=[ellipse Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; + fangs = derive2 { name="fangs"; version="0.2.2"; sha256="0gcwrnp06g0rwlkfi7qz2i2l56pqmrlb6knkqsaa3n3nx2d46x1k"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="4.0.0"; sha256="08zd2af26ah1rdkzxi1sv4c4l06jpxd6m38q3xy657k2jm90rkkc"; depends=[]; }; fansi = derive2 { name="fansi"; version="1.0.3"; sha256="0sn0kflgcn2qrrv646pzqylm02cx8l5ws473ppmvla4xihyvi9w6"; depends=[]; }; @@ -9020,10 +9069,9 @@ in with self; { farr = derive2 { name="farr"; version="0.2.27"; sha256="0xffahbj5dxdlg25k3nj554np85h51d6yarxxam9ndxqmrva6k0y"; depends=[DBI dbplyr dplyr lubridate magrittr readr rlang stringr tibble tidyr]; }; farrell = derive2 { name="farrell"; version="0.2.1"; sha256="0i546w5p40j9wqiq7qvbxw0426msavbdpnh258jcg6bagc6bywh8"; depends=[Benchmarking data_table dplyr DT magrittr miniUI readr rlang shiny shinycssloaders shinyWidgets tibble]; }; farver = derive2 { name="farver"; version="2.1.1"; sha256="1klnr73fhm7n46q85in1v9gi99y6rcdzzg4h4wvnbx23lxndmkqd"; depends=[]; }; - fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.1.0"; sha256="1vxkq7pj2gsln3vyj3g0qx1ycvar1qrrv4hla33wz3a5g2fy9fnx"; depends=[Rcpp RcppParallel]; }; + fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.1.1"; sha256="0h28ph562ac345l022x9jblzhkk7qn2knrp5jh38flw0xkv9g2yf"; depends=[Rcpp RcppParallel]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fasstr = derive2 { name="fasstr"; version="0.5.0"; sha256="1cpzihrniyg7scxbj349ahvp9p1ji4r1498fh5hv38qas6pk3vil"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; - fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; }; fastDummies = derive2 { name="fastDummies"; version="1.6.3"; sha256="1pw1bpp69sbs8yc1s5ffz11q249ljfwbgfrq6irg5pyp37z38fdx"; depends=[data_table stringr tibble]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="1.0.1"; sha256="1zj7nsbnx4g253m3dpz9vi3zk3jxwrixwjw1ks6n4shpb4dlkp2w"; depends=[Rcpp]; }; fastGLCM = derive2 { name="fastGLCM"; version="1.0.2"; sha256="1f7mafhsygbz1vrjvpva2zql0d6dphzr31skh9agancghh8hnm3q"; depends=[OpenImageR R6 Rcpp RcppArmadillo rlang]; }; @@ -9040,9 +9088,9 @@ in with self; { fastRhockey = derive2 { name="fastRhockey"; version="0.4.0"; sha256="1xw4ylrsf9wylym79svazrmw2c9fmqk8n0sz1vypsm29dsic879k"; depends=[cli data_table dplyr glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.1"; sha256="1fzy7lfx1fn9993h0qh6vbwq0w4gfgbdrprmzb1z3aqq6nqvmngm"; depends=[]; }; fastText = derive2 { name="fastText"; version="1.0.3"; sha256="1kb0ig17rq4iyqqlppf39ixgfqgm22wmv27xji2rknsq9df3c4kr"; depends=[data_table ggplot2 glue Rcpp]; }; - fastTextR = derive2 { name="fastTextR"; version="2.0.0"; sha256="1ggmwsw2qnq8v3s8iaxi8q66c898pc15wfgpsp6h0mc761qih5lf"; depends=[Rcpp slam]; }; + fastTextR = derive2 { name="fastTextR"; version="2.0.1"; sha256="1f1b9dsir0dxw2psp721vgpjj6pwrx1xxsd0cqxnfq8mpwswf125"; depends=[Rcpp slam]; }; fastTopics = derive2 { name="fastTopics"; version="0.6-142"; sha256="0fchwd54dn6abw5z8wk4wcysn9amjxmkayz8wzl3nwfr0ldjkc67"; depends=[ashr cowplot dplyr ggplot2 ggrepel htmlwidgets irlba Matrix MCMCpack pbapply plotly progress quadprog Rcpp RcppArmadillo RcppParallel Rtsne uwot]; }; - fastWavelets = derive2 { name="fastWavelets"; version="1.0.0"; sha256="1w2dbibl3291bqygwl2pn7jdskq6sy713r39hr4jjbh0zf0jlxdd"; depends=[Rcpp]; }; + fastWavelets = derive2 { name="fastWavelets"; version="1.0.1"; sha256="1kz49iw3d37kby6hdk7zvsahms735w46pky186jz0qq9vh4agxn9"; depends=[Rcpp]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastadi = derive2 { name="fastadi"; version="0.1.1"; sha256="1hvi430ws1yzw10fp4z177wc1bnj11pxmvjsbmx0p54bcbb3a32a"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; fastai = derive2 { name="fastai"; version="2.2.0"; sha256="19hybrmcrlgawayvl0wxr646dmxmwjap64wdhd023rclby1nsg4c"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; @@ -9053,7 +9101,7 @@ in with self; { fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; - fasterize = derive2 { name="fasterize"; version="1.0.3"; sha256="10bzl77c1b9jhcn1xp467qzp2n8c7s3wpxn53qjh1nwvbri5kd32"; depends=[raster Rcpp RcppArmadillo sp]; }; + fasterize = derive2 { name="fasterize"; version="1.0.4"; sha256="1ckxi2iyxdahhgbliblcrkzziblfagzr54srjk27yp1lcgivvvs4"; depends=[raster Rcpp RcppArmadillo sp]; }; fastglm = derive2 { name="fastglm"; version="0.0.3"; sha256="0283kgk81cxbii7ljmp1rzqg5mzkvf7cj7lflhhhkgj5ljqina2i"; depends=[BH bigmemory Rcpp RcppEigen]; }; fasthplus = derive2 { name="fasthplus"; version="1.0"; sha256="05j4lg1gkkz1vi99dx73igvk9xyrli8j6m4hzhpcnyhy0h9bxiqj"; depends=[]; }; fastkmedoids = derive2 { name="fastkmedoids"; version="1.2"; sha256="1z98ndxhq2ag870g0xqkw04b4k722994vh0pq46bw8bqc9v7bpkk"; depends=[Rcpp]; }; @@ -9073,7 +9121,7 @@ in with self; { fastrmodels = derive2 { name="fastrmodels"; version="1.0.2"; sha256="1333546nk429l6s4icbmx8hmh29wsc252wbmmhsmgb116l4ra9zi"; depends=[xgboost]; }; fastshap = derive2 { name="fastshap"; version="0.0.7"; sha256="0gxch67i3bj6m8nb94m5hswq058w6n1q9war4dy2qnimlv7cmhdv"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; }; fasttime = derive2 { name="fasttime"; version="1.1-0"; sha256="00290sxfa6nihahm3s9bslpsmyfm0cpziajmr9mg7grxrzx53ia6"; depends=[]; }; - fastverse = derive2 { name="fastverse"; version="0.2.4"; sha256="07nzhyfvs52b4bhm7c0m9iizw4mwkgnj1h5vvpxr04d5zkrkk7y0"; depends=[collapse data_table fst kit magrittr matrixStats]; }; + fastverse = derive2 { name="fastverse"; version="0.3.0"; sha256="0sr2nwqwxcvn118srrpws2cw0vpimchrv0k03z0f7i07989fqfc7"; depends=[collapse data_table kit magrittr]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; faux = derive2 { name="faux"; version="1.1.0"; sha256="0cmgsm8c8w5d5zk00j4872x7fby0rdi7lmw0w0ncahlnh72grpjm"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; fauxnaif = derive2 { name="fauxnaif"; version="0.7.1"; sha256="1d2sfcknlaa4m3sq3cg65iq17x3ax0zgkgxkcyin3d8r3sw9k3p6"; depends=[cli rlang]; }; @@ -9085,14 +9133,14 @@ in with self; { fbati = derive2 { name="fbati"; version="1.0-5"; sha256="037rzw2mnhb7m83hrx8pzwy2n4fyhbjzg2nhmlgxyr1qra638p3v"; depends=[fgui pbatR rootSolve]; }; fbnet = derive2 { name="fbnet"; version="1.0.1"; sha256="17kafsnzijjkjlp15yv3qy1vga7vsgna74ax5yk0mvdninl3dxha"; depends=[assertthat igraph Rsolnp]; }; fbroc = derive2 { name="fbroc"; version="0.4.1"; sha256="1v73wl3yckcqx43fz1lzcsy6v08vmbmi7yi623yhgqywixxv2bx3"; depends=[ggplot2 Rcpp]; }; - fbst = derive2 { name="fbst"; version="1.9"; sha256="0lfi2rh84qijjcwxycf6v78qfk8d67vpbcjlaaplvaq6k2h68bby"; depends=[bayestestR cubature ks rstanarm viridis]; }; + fbst = derive2 { name="fbst"; version="2.1"; sha256="15d73hngw8607la36cpl5z7ac18cpwkmqzp67ga2c5n94z2h8asc"; depends=[bayestestR cubature ks rstanarm viridis]; }; fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; fca = derive2 { name="fca"; version="0.1.0"; sha256="0jcdyylb0byz70k3kypa2mdd5sc5nq81jfbpljjg2amczq7s5wzy"; depends=[]; }; fcaR = derive2 { name="fcaR"; version="1.2.0"; sha256="04hmyndadrm6bs5vxbyh9wii6xm3vw71dy06q5b69x2344y3p5a9"; depends=[forcats fractional glue magrittr Matrix POSetR purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; fcci = derive2 { name="fcci"; version="1.0.1"; sha256="02q6q0q7fqdbp20fdf33jbkh0aj9nzl6dwysr0nn146ciz3vqgin"; depends=[assertthat Rcpp rlang]; }; fcfdr = derive2 { name="fcfdr"; version="1.0.0"; sha256="16mnpr64x00qwbgq9pw69k941yb0i7mx7ncsilahicprxqyfpfww"; depends=[bigsplines cowplot data_table dplyr fields ggplot2 hexbin Hmisc locfdr MASS polyCub spatstat_geom]; }; fcirt = derive2 { name="fcirt"; version="0.1.0"; sha256="1wiyiz51mkm5kd95xmpvlwng51awpp4y133dd5q88mnafrxyij1h"; depends=[BH numDeriv Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - fclust = derive2 { name="fclust"; version="2.1.1"; sha256="11dsf7mb075m1m1ilqsacc0s4907wq6alvdfh6nizsyr01wiqw3b"; depends=[MASS Rcpp RcppArmadillo]; }; + fclust = derive2 { name="fclust"; version="2.1.1.1"; sha256="1d5qa30jlx6qn6npvccl97fcmh5a4wf3nw0d7jvn3y7mcb5yqlqk"; depends=[MASS Rcpp RcppArmadillo]; }; fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; fcr = derive2 { name="fcr"; version="1.0"; sha256="17jrz5zp1msd2khl1lwnb5sgxcigagni556rhn7qm9g0aykbh8yj"; depends=[face fields mgcv]; }; fcros = derive2 { name="fcros"; version="1.6.1"; sha256="04yr6lqs38lczsmdvdm78qn63836qj7xwspgh3h3n3gh8cssd83x"; depends=[]; }; @@ -9104,7 +9152,7 @@ in with self; { fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; fdaMocca = derive2 { name="fdaMocca"; version="0.1-1"; sha256="0y54d8a38d5hjnh8iw2r4zl2d2xz72hjddhxbar91jk6zf3kzpsy"; depends=[doParallel fda foreach Matrix mvtnorm]; }; - fdaPDE = derive2 { name="fdaPDE"; version="1.1-8"; sha256="0na5rylh5lcs33xgxb4zjwmr3in5220vjhml0hlh5017hbxfgcam"; depends=[geometry Matrix plot3D RcppEigen rgl]; }; + fdaPDE = derive2 { name="fdaPDE"; version="1.1-11"; sha256="09ba71fnblv9r2c22amy92wv3xpa395rf7x681p8zs5rldhk8i5a"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.3"; sha256="0c773hidrg69gs9lzdcwf4hzzmid3kwf73pw6c807y1b4lgiai20"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; fdacluster = derive2 { name="fdacluster"; version="0.1.1"; sha256="1rr1hcnpzya53h09p4yc1784kzrw7wlcylax4x2pdp1grzf1wakq"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; }; fdaconcur = derive2 { name="fdaconcur"; version="0.1.0"; sha256="1xlhn9di70z49y79l2pwffqykmz8j5p09hihhf6rsbsrjy42nwbv"; depends=[fdapace]; }; @@ -9115,7 +9163,6 @@ in with self; { fdasrvf = derive2 { name="fdasrvf"; version="1.9.8"; sha256="1x8djgy3p8phqq0d3hbfhjk5h30sx05y7k5nqfrw8k8ix0x040p4"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1.1"; sha256="13sd85ypx2z07qxsqhsbc5w0yasf01yw06qx91ymh0yr8538x3x3"; depends=[fda]; }; fddm = derive2 { name="fddm"; version="0.5-2"; sha256="0sh3qnsakl02wpzwhxyqdikn7xx5crh401w3d149ww2jxvagjmsf"; depends=[Rcpp]; }; - fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; fdm2id = derive2 { name="fdm2id"; version="0.9.8"; sha256="1j6cbgvkf6glx1c77pqzbk2qbii128ycgm3x75k3qq840b2ma0cc"; depends=[arules arulesViz FactoMineR mclust nnet pls]; }; fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; @@ -9146,6 +9193,9 @@ in with self; { fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.2"; sha256="0yxw18yzj5j2fpj4rf9flmmng4s2ldgx4yaywa2hrclbnl43c578"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; + fertilmodel = derive2 { name="fertilmodel"; version="1.0"; sha256="1mznpay0ibdgm67k5xjfwfb5lp07r4163h3ad33k2zsyk2f31nsq"; depends=[]; }; + fetchGoogleAnalyticsR = derive2 { name="fetchGoogleAnalyticsR"; version="0.1.0"; sha256="12s18jicx9rd5dhc8l7hm09lr71nhz6k72j3w4c1j5ds9h522krg"; depends=[jsonlite]; }; + fetchSalesforceR = derive2 { name="fetchSalesforceR"; version="0.1.0"; sha256="1826i031wndasgcxxa0bh88vp1r49flzphyfk79pixvlrfjn6gi8"; depends=[jsonlite]; }; ff = derive2 { name="ff"; version="4.0.7"; sha256="1yl3ipzz9bjkfy9bbna7xz5n7iz4lchnw5l7agww7by764yk6iqa"; depends=[bit]; }; fflr = derive2 { name="fflr"; version="2.1.0"; sha256="0982h1r2hjn54xvnkxn999r4hlgxm6c1xw98hvnpa4zhk7959wsw"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.1"; sha256="19kdlcslqnwcsdjxx0n86is5cjz21sn8vpylyq8s4i7q7nrlyxwp"; depends=[]; }; @@ -9166,7 +9216,7 @@ in with self; { fglsnet = derive2 { name="fglsnet"; version="1.0"; sha256="00qn4k4xm1zfkz77lys468c1mfx3vyfjkf19wdbcvgssrmf6w0xd"; depends=[lmtest MASS Matrix matrixcalc network sandwich sna]; }; fgm = derive2 { name="fgm"; version="1.0"; sha256="0i6lbqxxjq78dql14qwqs7slnn0kyls2g3a9biabny2narwf6n3m"; depends=[fdapace JGL]; }; fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; }; - fhircrackr = derive2 { name="fhircrackr"; version="2.0.0"; sha256="1vjlslf3zg1c3vmblfsh8brmy4ikvir22xnmbp1529fs9kyr8b3y"; depends=[data_table httr lifecycle stringr xml2]; }; + fhircrackr = derive2 { name="fhircrackr"; version="2.1.0"; sha256="07zngm3dad242aabi4gz9vzvhdcfksbg18vlswvp036fbyw63p4j"; depends=[data_table httr lifecycle stringr xml2]; }; fiberLD = derive2 { name="fiberLD"; version="0.1-7"; sha256="04rqqg8zr6adhcls0d381fjrrc797aqy84gzl9gx3qiwlwcw8x0d"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo VGAM]; }; fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; fidelius = derive2 { name="fidelius"; version="0.0.2"; sha256="18dsw069j3jzl0splgjjdsybny1hq0dmiyygri8nlfwshijkw15h"; depends=[askpass fs htmltools readr rlang rmarkdown rstudioapi sodium whisker]; }; @@ -9175,9 +9225,11 @@ in with self; { fields = derive2 { name="fields"; version="14.1"; sha256="0d2lm4s9p3rv676z291fynpx3vdmi6cikcqlj23fxlj34icwbi2p"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.4"; sha256="0wfn7l766074pm8a821sx9z1xprq2ps90ayhs5l4pfppqz91kdf3"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; fig = derive2 { name="fig"; version="1.0.0"; sha256="1mzvng4r4xmkmbl55pspjk9bcvkri96vkmjaqkjn8nqxv39sy1pr"; depends=[R6]; }; + figir = derive2 { name="figir"; version="0.1.6.8"; sha256="0jbl6bxms4g6m3qamcgl5z0k57f2r3444577hi78gpsbwwx0n022"; depends=[]; }; + figma = derive2 { name="figma"; version="0.1.0"; sha256="10lznzqlrnnp44sfqdv6x2c2prp9yb7g64dv59b0bv094jx1cg82"; depends=[dplyr httr purrr rlang tibble]; }; figpatch = derive2 { name="figpatch"; version="0.2"; sha256="0sy63131al6z0hlhpb11aphlxdigb0pqk9bq9mxc9nbc59036jjq"; depends=[ggplot2 magick magrittr patchwork]; }; figuRes2 = derive2 { name="figuRes2"; version="1.0.0"; sha256="1s1bvhgzczkpxfmi1cyz4cfvpxvq28fm5867a4w5q0wpjcbhlma4"; depends=[ggplot2 gridExtra gtable plyr reshape2 scales stringr survival]; }; - file2meco = derive2 { name="file2meco"; version="0.4.0"; sha256="1wfg1mfj52ghkvyb84q2j9kxq7szx6mr64v3bspi410gr7n1vpd2"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; + file2meco = derive2 { name="file2meco"; version="0.5.0"; sha256="04rvmkw9b640ras11z8na9ac8kddrdphbjhq8il3pyh0jrf15yvh"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.5"; sha256="0s7qy4rf02i7r6xfysdlflgk3jwqvi2zzvk8zxhnb1x1wqncmfng"; depends=[BH digest Rcpp]; }; filebin = derive2 { name="filebin"; version="0.0.5"; sha256="1k13vwppk3f3acnyz32wrjmr80x0lbdzv0sx74xr87n1kbrrv5fn"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; filehash = derive2 { name="filehash"; version="2.4-3"; sha256="1ga17smgjd4qsnf5a7qk0giwhpc5969ylqj520favs1k6b4y557k"; depends=[]; }; @@ -9191,7 +9243,8 @@ in with self; { fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; finalfit = derive2 { name="finalfit"; version="1.0.5"; sha256="0h7wzpmsr0bfk4y3k49c2vyd4ianvvhrnh7j0nxpia1qvrakyvf9"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr tidyselect]; }; - finbif = derive2 { name="finbif"; version="0.7.0"; sha256="0sfmmxnbr3x6fgjg13b0i0va8vbqvqpf4y661z6mn3yrq0rizrva"; depends=[digest httr jsonlite lubridate lutz]; }; + finalsize = derive2 { name="finalsize"; version="0.1"; sha256="0ir5xgr4qc0bl5c3gl06afcvbkhixaadwlyh0np5fmzlfsl8mpv1"; depends=[Rcpp RcppEigen]; }; + finbif = derive2 { name="finbif"; version="0.7.1"; sha256="1fsap2saq8xr9s440h195851987sp3aaw8bjg66s3bsk78bvap1s"; depends=[digest httr lubridate lutz]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; findInFiles = derive2 { name="findInFiles"; version="0.4.0"; sha256="1saxi8l4006wwxrw18g7wx0pj7l427a2rnb723k0irlhvq0icgwq"; depends=[crayon htmlwidgets shiny stringi stringr tibble vctrs]; }; findInGit = derive2 { name="findInGit"; version="0.1.1"; sha256="1j5mvp34nsczmvp5jx7c9gp20q7aqaxrqm2zvj8aq31rc8mfaxk9"; depends=[crayon htmlwidgets stringr]; }; @@ -9204,7 +9257,7 @@ in with self; { finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; - finnts = derive2 { name="finnts"; version="0.2.0"; sha256="113nwwy494vghqrmxdnbgnkd6kzmdkba144q46ldfiif2gyx44g3"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; + finnts = derive2 { name="finnts"; version="0.2.1"; sha256="0ih4z51n3g1villz59l0fbb9lwrs4cv46chmh9nv6ry3rmskrj41"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipio = derive2 { name="fipio"; version="1.1.1"; sha256="0wvx64nazbv44hdsj3q6mz70m81asmwgxp28sapaaal36l180jfs"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; @@ -9221,6 +9274,7 @@ in with self; { fitConic = derive2 { name="fitConic"; version="1.2"; sha256="0mwnbq32mpj8d4127jwb283mn3gs4hm0klwk9prsrfkdnhqai41i"; depends=[pracma]; }; fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.1.4"; sha256="1cb7cnir7fpvf8j8abw8imz6zxg4dznjmkyrbcx0yr09qvjal81b"; depends=[ghyp ICSNP mvtnorm numDeriv]; }; fitODBOD = derive2 { name="fitODBOD"; version="1.4.1-1"; sha256="0sx7la3bcii8fh8ril5ibbr4x97zgqwl7h889gnk6j733pcmgx0p"; depends=[bbmle hypergeo]; }; + fitPS = derive2 { name="fitPS"; version="0.2"; sha256="13xn30nbq928v6dmcjjl2vhrvc8qs6m7ldc2wzl14aanprcjiw18"; depends=[dplyr readxl VGAM]; }; fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitbitViz = derive2 { name="fitbitViz"; version="1.0.4"; sha256="1cp5nkaj9ikqcv3yp030id1wklj3jnx002sz2ib0vzza81zyw8bw"; depends=[data_table ggplot2 ggthemes glue hms httr jsonlite leafgl leaflet lubridate magrittr paletteer patchwork raster rayshader rstudioapi scales sf terra varian viridis XML]; }; @@ -9251,6 +9305,7 @@ in with self; { flashCard = derive2 { name="flashCard"; version="0.1.0"; sha256="1l1g3hy0gchsmdj04d065rl71hkvxydyqsmav5qwxyz2mdkknkhi"; depends=[htmlwidgets jsonlite]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; flashlight = derive2 { name="flashlight"; version="0.8.0"; sha256="0gzpq3cmb8kspjhk74qrhlkdj8fjw75sywnwvkwbvy3cp11hffp6"; depends=[cowplot dplyr ggplot2 MetricsWeighted rpart rpart_plot tidyr tidyselect withr]; }; + flashr = derive2 { name="flashr"; version="0.1.0"; sha256="0w3fs6psarqp19zc8qpmg2744cd64lxgi4hbkp5nl6v00p53nkvc"; depends=[cli curl gh httr memoise revealjs rmarkdown testthat]; }; flatness = derive2 { name="flatness"; version="0.1.4"; sha256="0zl1x4wn5wgm9aksb96ghh395z7fz1awglfjdiid4ak5ssbqgsbq"; depends=[data_table lattice xtable]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; flattabler = derive2 { name="flattabler"; version="1.2.0"; sha256="156q3af7bmqcaxvl35634ph8dzs6gdjxqqkgwi214kj2pywpqg2a"; depends=[dplyr readxl stringr tibble tidyr]; }; @@ -9264,15 +9319,15 @@ in with self; { flexmix = derive2 { name="flexmix"; version="2.3-18"; sha256="0lcvsvmhkbwac50l109an6prl1ng4mkyvr436344b20897ph28j6"; depends=[lattice modeltools nnet]; }; flexmixNL = derive2 { name="flexmixNL"; version="0.0.1"; sha256="0bk5v0cnsn1qkd1b86vj0bnpr4l9d6523kpkgzb1l1sqyscawfmm"; depends=[flexmix gnm]; }; flexpolyline = derive2 { name="flexpolyline"; version="0.2.6"; sha256="1h4csrcx193372aw6di2wr0zzd71w1bdf0b9zqqwak1q3mdszgl6"; depends=[Rcpp sf]; }; - flexrsurv = derive2 { name="flexrsurv"; version="2.0.11"; sha256="0wxv4zch353zmkfmcm61w39sli6h553bpj27mf4hi51n1p8ajkx1"; depends=[Epi Formula formula_tools Matrix numDeriv orthogonalsplinebasis R_utils statmod survival]; }; - flexsiteboard = derive2 { name="flexsiteboard"; version="0.0.6"; sha256="1wrzm3nm5hngk30zzcn18f8jcvfsxw751zgvw4fkff6hqbj2yf6l"; depends=[flexdashboard htmltools htmlwidgets jsonlite knitr rmarkdown yaml]; }; + flexrsurv = derive2 { name="flexrsurv"; version="2.0.13"; sha256="06xzfbn8i6jkgq0q71a5wxq6f1g6nkw47akp1bhj93qfyvfryp9l"; depends=[Epi Formula formula_tools Matrix numDeriv orthogonalsplinebasis R_utils statmod survival]; }; + flexsiteboard = derive2 { name="flexsiteboard"; version="0.0.7"; sha256="0msbz3x7lsi6xcw8dcqzwnylaj76f8mgj6cf3hqscrfjzhs86rym"; depends=[flexdashboard htmltools htmlwidgets jsonlite knitr rmarkdown yaml]; }; flexsurv = derive2 { name="flexsurv"; version="2.2"; sha256="0244amsyf2izih6008n2535r3ddksgdnys8pyslrcb1c09spmjrw"; depends=[assertthat deSolve dplyr generics ggplot2 magrittr Matrix mstate muhaz mvtnorm numDeriv purrr quadprog Rcpp rlang rstpm2 statmod survival tibble tidyr tidyselect]; }; - flexsurvcure = derive2 { name="flexsurvcure"; version="1.3.0"; sha256="0zbbjfc8inqwhafb8202djy05h577qjy2xrkbkjy2kcfj8lvqps2"; depends=[boot flexsurv survival]; }; - flextable = derive2 { name="flextable"; version="0.8.2"; sha256="054rkx98qhwp8i4fj9jkv5297sc4g193wfs6b537q62iyqmcjlx3"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; + flexsurvcure = derive2 { name="flexsurvcure"; version="1.3.1"; sha256="0mhpzcrqxsi7f2m565qy648vg26rsvy7d249ia7y7kd5wcildw8b"; depends=[boot flexsurv survival]; }; + flextable = derive2 { name="flextable"; version="0.8.3"; sha256="0fqc0zq1w7fdnql2m96g0rpichfpwrhyinnld29ddaw0d742gfj5"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.2.0"; sha256="16cn3m73pd2lp6p5ixswxjdbzwj6hq60jwzymp3r30rwzcqrh4wh"; depends=[data_table httr parzer pbapply rvest]; }; - flimo = derive2 { name="flimo"; version="0.1.2"; sha256="0a7azwrxfwj66672s1rpvp1nqkbd9g7gyppkzf779yg0phisva8w"; depends=[ggplot2 gridExtra JuliaConnectoR latex2exp]; }; + flightsbr = derive2 { name="flightsbr"; version="0.2.1"; sha256="10bsfn7a8zzsrf2fr9svsfx50dv1vlivq8dd82yn18i1vf1hzaib"; depends=[data_table httr parzer pbapply rvest]; }; + flimo = derive2 { name="flimo"; version="0.1.3"; sha256="0xgxbcik40fjqzz55wraljcp8j1pvhm5zzgin7l50xk24yyiyvrh"; depends=[ggplot2 JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.0.2"; sha256="13bzglcwd4r6q8ix8diy2dljns722k29zbd782fvkxc59ikx7dja"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; @@ -9304,14 +9359,13 @@ in with self; { fmpcloudr = derive2 { name="fmpcloudr"; version="0.1.5"; sha256="07fvmrprv0pka1wgp5ygcvv86jvn3h30xxkx44ssin15hfmank69"; depends=[dplyr httr jsonlite lubridate magrittr tidyr]; }; fmri = derive2 { name="fmri"; version="1.9.6"; sha256="1wh77xwpm8f9d9vky3r7vfmkik3hls008ifk8hkm2rq6i06jj53n"; depends=[aws metafor nlme]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; - fmsb = derive2 { name="fmsb"; version="0.7.3"; sha256="1gi94xr0b1yk9xzwfprfafxi25yic1lcivd66p73n6iqfzdaimbk"; depends=[]; }; + fmsb = derive2 { name="fmsb"; version="0.7.4"; sha256="1rmmvx38rmamiw0ajqhlksgxj6fgm8ymq903yxqq2bzxx8fhj5n2"; depends=[]; }; fmt = derive2 { name="fmt"; version="2.0"; sha256="04df84979a8vaacfhxsb58zci1mmh113ir7qnkniv5qnyvdabacm"; depends=[limma]; }; fmtr = derive2 { name="fmtr"; version="1.5.9"; sha256="0n62jrbxpb82d6rnbf6qxi8971cn0ywfl43r1d47j6dmjbl0dhq8"; depends=[common crayon Rcpp tibble]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.5.1"; sha256="0fbr38hxl2qwr1pbvbwwnkr9dk8saq13w0ld6waky70g7k7va8m4"; depends=[clisymbols crayon curl httr2 rlang rvest tibble xml2]; }; - foieGras = derive2 { name="foieGras"; version="0.7-6"; sha256="0g4c9id7q3jgjcgwmncp4bkw9njwb41cp6ycv7psiidkhmnzi03d"; depends=[assertthat CircStats dplyr furrr future ggplot2 lifecycle lubridate mvtnorm patchwork purrr RcppEigen sf stringr tibble tidyr TMB tmvtnorm trip]; }; folderfun = derive2 { name="folderfun"; version="0.1.4"; sha256="0rns8590r1897lj0gyrlj0zbaxjw2gjaxwnwdxiiw2kvyq7mjkis"; depends=[]; }; - folio = derive2 { name="folio"; version="1.2.0"; sha256="1d5xf0bhzmmh7n9rsysbp4cxipcxplmlj154lrnbwzic5jmjn80m"; depends=[]; }; + folio = derive2 { name="folio"; version="1.3.0"; sha256="1jkix4hjb6whv1bz8gjrclwlsc415vccvldvi5l998r0bsnbm04c"; depends=[]; }; fomantic_plus = derive2 { name="fomantic.plus"; version="0.1.0"; sha256="0zj50v036zal51b7744bp62c1bzjwdvzw1qwy0lyhgjxly6kb2hy"; depends=[htmltools jsonlite shiny shiny_semantic]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; @@ -9330,13 +9384,13 @@ in with self; { forceR = derive2 { name="forceR"; version="1.0.15"; sha256="025kpa5mnv336b1ghxdilw4kc0razgvjvlc5k5r435zi6gf4ny7w"; depends=[dplyr filesstrings magrittr purrr readr roll stringr]; }; foreSIGHT = derive2 { name="foreSIGHT"; version="1.1.0"; sha256="0a018hc8pavb8sqizc5922gmiwsdlq3hgwkx29pzpajjlhrybgpj"; depends=[cowplot directlabels doParallel fields GA ggplot2 jsonlite lattice moments mvtnorm progress RColorBrewer rcorpora Rcpp rlang scales viridisLite]; }; foreach = derive2 { name="foreach"; version="1.5.2"; sha256="1r5gdf9fp3rprvrhf0gzl9qmmqhgdn5gscpm5hk8zxpraf3qscsn"; depends=[codetools iterators]; }; - forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; - forecast = derive2 { name="forecast"; version="8.18"; sha256="1pfq2b1ppkbg3a9bag4jrfsjclf0c7mdqbhf1l08h6fqv6lbl82r"; depends=[colorspace fracdiff generics ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; + forecTheta = derive2 { name="forecTheta"; version="2.6.2"; sha256="0xw5xl6famx0wy68a32f8vgqk02lkymvxq082yp16giidvzvqjwd"; depends=[forecast tseries]; }; + forecast = derive2 { name="forecast"; version="8.19"; sha256="1l3mdldghsf319fh8gx81w8f5i5mnrcn70rjjylzk4j8n7gicpih"; depends=[colorspace fracdiff generics ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="5.0.19"; sha256="1pg3wbmlagr01j3nikfh4dvh5lvbdfp7069wx9h9xsl7d4481ly1"; depends=[doParallel foreach forecast ggplot2 purrr thief zoo]; }; forecastML = derive2 { name="forecastML"; version="0.9.0"; sha256="01lqbmdmd6sk5xka19i9d466bzihxgp652v0kr13r82b591f67vq"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.3-0"; sha256="0p47x7ic2ib7znqbp8br4b2ci75f5w8x413z9g4n30m002p7irp1"; depends=[Rcpp]; }; forecasteR = derive2 { name="forecasteR"; version="1.1.6"; sha256="1lqlmiwr34rim50y9vxinf23xi9gj0y6p1y1wp3vlfycdkd0lca5"; depends=[colourpicker config DT echarts4r forecast golem htmltools htmlwidgets lubridate rlang scales shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs stringr]; }; - foreign = derive2 { name="foreign"; version="0.8-83"; sha256="06vj61h52idbjbgmbd6ml9541q3vr38j2gjvlkqbqsqbg0zygsl7"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-84"; sha256="0jc5r5wiqqbkni2xjdd24hic1xvfi151m9lnqhni52jnqw1g7v8p"; depends=[]; }; forestControl = derive2 { name="forestControl"; version="0.2.2"; sha256="0g81ml12xhq2a868vlpsybpsqz7p4hn9jnxh3dvq6g4k1hc1292x"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestError = derive2 { name="forestError"; version="1.1.0"; sha256="1dk19sgx760ph464cya4gxb1i3rpnydnhrbqyb25jja0dryjapcm"; depends=[data_table purrr]; }; forestHES = derive2 { name="forestHES"; version="1.0-1"; sha256="05l04ly3l8xkdz3rnnrfa4y0wfmh1am2ixbz1vfarnqkc0zppwpj"; depends=[]; }; @@ -9345,13 +9399,14 @@ in with self; { forestinventory = derive2 { name="forestinventory"; version="1.0.0"; sha256="1v5gyx8i64zn1cinwvm86syq26vhfzw2maaiymy32fphzybwxivf"; depends=[ggplot2 plyr tidyr]; }; forestmangr = derive2 { name="forestmangr"; version="0.9.4"; sha256="1zlp7lnawbfqw60552cwnh280spqj7p2qvn2xwz5y7wly2d7d4fm"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; - forestplot = derive2 { name="forestplot"; version="3.1.0"; sha256="0xk30mpb87sab2afnk2j474qjjf4j6x1ifh9j5n7w690f481iqqb"; depends=[abind checkmate]; }; - forestploter = derive2 { name="forestploter"; version="0.2.2"; sha256="0gmcmjr8r4xklzqdx2i2aimmwas50v6g7lmib3v5xxlq8rfxm0ad"; depends=[gridExtra gtable]; }; + forestplot = derive2 { name="forestplot"; version="3.1.1"; sha256="0jf7sl7z963r92l5r2irvnakmbmx554vbprg51smj6qns5a6dfcj"; depends=[abind checkmate]; }; + forestploter = derive2 { name="forestploter"; version="0.2.3"; sha256="1x63sz8diw2agyxkmhr2li29vz0x8j9v8v9y14v8qsmh5gfnwska"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; forge = derive2 { name="forge"; version="0.2.0"; sha256="0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"; depends=[magrittr rlang]; }; formatR = derive2 { name="formatR"; version="1.12"; sha256="12wch1774113nlrc0lihfn5rbh4hln9sg6dv6zc2bvyb8fzyyllb"; depends=[]; }; + formatdown = derive2 { name="formatdown"; version="0.1.1"; sha256="0hfpn7j8svv9yj1zpbszl79xshyi7kc20vv3kmp0z0r0lnv89vpg"; depends=[checkmate data_table wrapr]; }; formattable = derive2 { name="formattable"; version="0.2.1"; sha256="1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; formatters = derive2 { name="formatters"; version="0.3.2"; sha256="0fq7ygy1dbz2ncb2f979dfajlcbzrwljn6qkfx0rjvl1vwcvi9hk"; depends=[htmltools]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; @@ -9385,7 +9440,7 @@ in with self; { fpp3 = derive2 { name="fpp3"; version="0.4.0"; sha256="1920hlckc1bvdhqrp6mdl900c34k62v87k5l22zwwycx5gcicrxh"; depends=[cli crayon dplyr fable fabletools feasts ggplot2 lubridate magrittr purrr rstudioapi tibble tidyr tsibble tsibbledata urca]; }; fptdApprox = derive2 { name="fptdApprox"; version="2.4"; sha256="0ql52rx5wc7h5vxl567i065lmj4ygai3xpjwp7qrndl16x1j4k9l"; depends=[]; }; fqar = derive2 { name="fqar"; version="0.2.1"; sha256="1db96y5gisrkw1wzsbq7lw5ghly6jbga054n7xkn4rk0kvvb3a6b"; depends=[dplyr httr jsonlite rlang tidyr]; }; - fracdiff = derive2 { name="fracdiff"; version="1.5-1"; sha256="1dhfjlhr9sb38qgpsx0sm73l9lgc13d0fk32l7fmjfnalhr3n45q"; depends=[]; }; + fracdiff = derive2 { name="fracdiff"; version="1.5-2"; sha256="0dzl011c92skf7hmx1zvdwsrashmfkxy9p2wig35nzr8609qhpxc"; depends=[]; }; fracdist = derive2 { name="fracdist"; version="0.1.1"; sha256="0ssg8h1mvkzpwq4dn9fdxjg1vzhcv6606wsy0xrm1wz9p6s5rx74"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; @@ -9405,7 +9460,7 @@ in with self; { frechet = derive2 { name="frechet"; version="0.2.0"; sha256="1006mgy9avwkwy0666maac59xp4j27wq5yy3pwc3h1r05myxw379"; depends=[corrplot fdadensity fdapace Matrix osqp pracma]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; - freealg = derive2 { name="freealg"; version="1.0-8"; sha256="1mpqda4xk3hkr24a47kg8jzd23y7svvs5pcfgbhlmvpchsgxqzsd"; depends=[disordR mathjaxr partitions Rcpp]; }; + freealg = derive2 { name="freealg"; version="1.1-0"; sha256="10xc8d4ymx53hifmji3ag0svxpp833vndiylsrk5brhv9rg8wfb5"; depends=[disordR mathjaxr partitions Rcpp]; }; freebird = derive2 { name="freebird"; version="1.0"; sha256="1rxn4xdp801sng3dzfwm7j001igkn51qx2kc4bcpbczdhb43bzaw"; depends=[MASS Matrix Rmosek scalreg]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-3"; sha256="11v0ph0mhk8g9zwapcp2wgr1sbdwdqh7nhbrci87myapypdncqjc"; depends=[magic magrittr plyr]; }; @@ -9425,7 +9480,7 @@ in with self; { frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.1"; sha256="1d54zr87795gm4qc6aw3nv9i83rhnhv14rcpkrivdxhxv8rnhnn9"; depends=[survival]; }; fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; freshr = derive2 { name="freshr"; version="1.0.2"; sha256="1vzwdy5cssk9r3fvw0w1pxkn203whzycmvz9fdm08lkd538zwdnj"; depends=[]; }; - frictionless = derive2 { name="frictionless"; version="1.0.1"; sha256="0risjx7ahs2ysqfrlvyb88ab2r6wsfqsz4yiyac02j52lmgxncp4"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; + frictionless = derive2 { name="frictionless"; version="1.0.2"; sha256="0821j53jnkak4nfzqyqrm07qz79laxvwsx78bbn4y1765awyxvaw"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -9459,6 +9514,7 @@ in with self; { fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; fueleconomy = derive2 { name="fueleconomy"; version="1.0.0"; sha256="16a8wyliiidi6rw14ksimygfkl4a7yhxvss7l9bcvr1wfiplrn65"; depends=[]; }; fugue = derive2 { name="fugue"; version="0.1.7"; sha256="1myvi9cizxvahb6wn2k26v3x958xsrm2p414ar05injmfjdfnsmi"; depends=[]; }; + fuj = derive2 { name="fuj"; version="0.1.1"; sha256="14q2qzvpapm1qi5r0dqcw47ngakl2ppd5zmx2lalqwvi012xh25b"; depends=[]; }; fullROC = derive2 { name="fullROC"; version="0.1.0"; sha256="0pn4lh59snfcyyi28350lm4n9xh6y25hpjr38dc33bic4cfbqiyr"; depends=[]; }; fullfact = derive2 { name="fullfact"; version="1.5"; sha256="1p2f4rf54hd0icy49fkq6p973rqisjjmmr1brwcv0fg22nv2kidg"; depends=[afex lme4]; }; fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; @@ -9474,9 +9530,10 @@ in with self; { functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functiondepends = derive2 { name="functiondepends"; version="0.2.3"; sha256="0p831i8l81dbrncmr69024gm5g14p0xiv7li0ljdlqnrbc0fj64n"; depends=[dplyr magrittr purrr stringr tibble tidyr tidyselect]; }; - fundiversity = derive2 { name="fundiversity"; version="1.0.0"; sha256="1vkr955rl7ws1ypf6lpwx4pbqjhdqkvg6i3ca8q03ym4hdmcr0yz"; depends=[future_apply geometry Matrix vegan]; }; + fundiversity = derive2 { name="fundiversity"; version="1.1.1"; sha256="1wp2v7bd1vc8gs9g41s77pazkrv3mdw2m3pgjr7k6wdch0a9qhx2"; depends=[future_apply geometry Matrix vegan]; }; fungible = derive2 { name="fungible"; version="2.2.2"; sha256="1y90vlszrir2lmvp9nnnj7nqj6a03x03fmdypagzvsszqkdsr7db"; depends=[clue CVXR DEoptim GPArotation lattice MASS mvtnorm nleqslv pbmcapply Rcsdp RSpectra]; }; funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; + funkyheatmap = derive2 { name="funkyheatmap"; version="0.1.0"; sha256="0q5cfn7k0rh8694sldichvakqq4mxbfsya610dzn07q8jlri6ax5"; depends=[assertthat cli cowplot dplyr dynutils ggforce ggplot2 purrr RColorBrewer stringr tibble tidyr]; }; funmediation = derive2 { name="funmediation"; version="1.0.1"; sha256="1h4jic73f7ywk2g1mkg188q0bq6x8sn9sm7jhr8gvrnmh167ajw7"; depends=[boot refund tvem]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funneljoin = derive2 { name="funneljoin"; version="0.1.0"; sha256="17g1mvq9z5m29r0v2r2nn8980j515jamnpwvvnzj83vk84bz94rq"; depends=[broom dplyr glue magrittr purrr rlang tibble tidyr]; }; @@ -9494,28 +9551,26 @@ in with self; { futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.28.0"; sha256="1xhv0nf97yxxxsmxczyqqbnb4yn5sfn5vzvhm9dmw9csrmmadpbg"; depends=[digest globals listenv parallelly]; }; - future_apply = derive2 { name="future.apply"; version="1.9.1"; sha256="0cr141mamjxby79sww02493yal9lahslvp3a3ic7f856rbawq8jg"; depends=[future globals]; }; + future = derive2 { name="future"; version="1.29.0"; sha256="0ws3jp82qjpnvgn5xrxdq7hg7r97rkylj329f9jqr69g3paiyvc5"; depends=[digest globals listenv parallelly]; }; + future_apply = derive2 { name="future.apply"; version="1.10.0"; sha256="1all7ri4nsjxfakw8pssif22j33ch1nhw3sc0raqrzhj93c2vsfy"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; future_callr = derive2 { name="future.callr"; version="0.8.0"; sha256="1nhkmxaaii647gizrxa8zj1iakivml7zrqi4bvvs5yshc7m9slg9"; depends=[callr future]; }; - future_tests = derive2 { name="future.tests"; version="0.3.0"; sha256="1ssr0sd9h10151m5iaad17zqii7d18nnszq2svj0i8izk83xhrik"; depends=[cli crayon future prettyunits sessioninfo]; }; + future_tests = derive2 { name="future.tests"; version="0.4.0"; sha256="1knm3zxc61g6xgvp2wws405jp7ygva8nzqm9q8cvxdl7fk2l9q0a"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.4"; sha256="04841fh4nf7qriqk0b2ny943bji60bj42j8czg056d2dza4q4039"; depends=[]; }; - fuzzySim = derive2 { name="fuzzySim"; version="4.3"; sha256="1dzjl8d9kal4rvlgb0y5jdmakgnhgzpmzqpbac50qq5zqc34462c"; depends=[modEvA]; }; + fuzzySim = derive2 { name="fuzzySim"; version="4.9.2"; sha256="1l6mmpla0azayqsyqdlrgb40fr5vnmy82wl6a54qwinnz7vghmdn"; depends=[modEvA]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.6"; sha256="1v100flbnw3mjmakgswj0zfla2rm0s0vpg8w8v7j1lr9sfjz4s7c"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwb = derive2 { name="fwb"; version="0.1.1"; sha256="0hgbzmlbj1hhckpxv9zhchk8x8lq0ahcpvhcyibybkwxydii3dd4"; depends=[chk pbapply rlang]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; - fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.12"; sha256="08rcyqh0nwpjjybks05klpb3ghry5n2652y5vxz7f5wdvlzjkhwz"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen summclust]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; - fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.1"; sha256="1c3zdzyh8dz0vmbvd6942az95wqwrg70yr6xqsd7014p119dklb0"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; + fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.2"; sha256="1bxrwkf65qw3k6mqvp27lqw6i2r7bdbilnl9406k1nva353gcxxm"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; fy = derive2 { name="fy"; version="0.3.0"; sha256="13803ld4b59ly5h3zlianag9901jyw6p70bsyz5dj7k62hg7ha3s"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; - g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; }; g3viz = derive2 { name="g3viz"; version="1.1.5"; sha256="0pjn1rgqbrkbdrcnf01j9lm3257fnp7b0p5p3hyhg8srd990wp61"; depends=[cBioPortalData htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.2"; sha256="0n1x039a0pm4sz2rwsgq82n423zgp4xni69129dh3nvxfrc0hzc5"; depends=[]; }; gDefrag = derive2 { name="gDefrag"; version="0.3"; sha256="016vpj03drygxsa06jin225rfgjvjm938x65990ms15xcwrgv8nb"; depends=[igraph maptools rgdal rgeos sp]; }; @@ -9525,10 +9580,9 @@ in with self; { gMCP = derive2 { name="gMCP"; version="0.8-15"; sha256="01048j9489rrhv9syqrbw4c5i5gsll41ysm27awxw6l1rshbqsqn"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; gMCPLite = derive2 { name="gMCPLite"; version="0.1.2"; sha256="1vaqwbj64m7xvr9vhpy0vb3l88sp1cbnpnxvw20ma62qvrayk2yn"; depends=[ggplot2 MASS mvtnorm]; }; gMOIP = derive2 { name="gMOIP"; version="1.4.7"; sha256="1qg0ba3crky35l9qlcqg37bzrr9ilh8df1y110r2pqnkdns7ikj6"; depends=[dplyr geometry ggplot2 ggrepel MASS Matrix plyr png purrr Rfast rgl rlang sp tibble tidyr tidyselect]; }; - gMWT = derive2 { name="gMWT"; version="1.2"; sha256="0gy8mm6ajbd2nl059nrb24wkh06qbbbg2h8m6fl58n5wgsjns1va"; depends=[clinfun Rcpp RcppArmadillo]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.3.11"; sha256="1knaa410rkx88aphjxd64mn6z83r7fdiny4vdgdnhk3vsqcc0swh"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; - gRbase = derive2 { name="gRbase"; version="1.8.8"; sha256="1nzrmi0sy1jv565csl04nj80mrhh59jrl3115fyyhx6vib5d3mgx"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRain = derive2 { name="gRain"; version="1.3.12"; sha256="0l4wrbsjzkv3fhvkwc0pxccqcc3d6vkx2qgayiqgrq90nc458fhr"; depends=[broom graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRbase = derive2 { name="gRbase"; version="1.8.9"; sha256="0zix34w60l94qsfh6gxw9qf4l564fmml9s4nc4y5kr4nv11b9jns"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRc = derive2 { name="gRc"; version="0.4.4"; sha256="0p1m816al9djv5fhzgsgrbbbcpx5c5wjxvxwni6gs2cwxbxmdvcp"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; gRim = derive2 { name="gRim"; version="0.2.10"; sha256="1h5fds5paqg0bxdpbk6cz2wclw9sbwaw08zrp7dxims0n5fcc8zp"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; @@ -9539,7 +9593,8 @@ in with self; { gWQS = derive2 { name="gWQS"; version="3.0.4"; sha256="1yhbcmznii3n2sbw0z2rw1sdn0zlk5v2z7ww3nl7rn005g4q04hi"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-9"; sha256="1ifljpdazzmwf3mgkg9g76365n2cmw8dd3da161fpvw84xxyznfl"; depends=[digest]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-8"; sha256="02ic4avpa33dnqsnm1mzg7ci1psngk1p169pqf259szf6v39qf8h"; depends=[digest gWidgets2 memoise]; }; - gadget2 = derive2 { name="gadget2"; version="2.3.7"; sha256="1p7jpwy65gdl6kli1h2m9yi5p5ah1vm23xs03sm9l42fcbn7ffdw"; depends=[]; }; + gadget2 = derive2 { name="gadget2"; version="2.3.9"; sha256="1cha4n0bd1imlvpzsgd337p0my75kakjsxdmmgx8p519r2dl07vz"; depends=[]; }; + gadget3 = derive2 { name="gadget3"; version="0.8-4"; sha256="12s91c0wy0xvy5f89w05rsa8299hbywsp98z0a14l8s18dbgwfrf"; depends=[digest Matrix rlang TMB]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; gaiah = derive2 { name="gaiah"; version="0.0.4"; sha256="1ibsbmmpagr7ix1c3bszrglqx95w44qyfy80vcq3w2dprs8vrrw6"; depends=[dplyr geosphere magrittr maptools raster rlang sp]; }; gainML = derive2 { name="gainML"; version="0.1.0"; sha256="1mqhrdjdmc2n7dxilxkqn6xq7z0qnxpigw5bbffnjvvsmdamah0n"; depends=[fields FNN]; }; @@ -9548,7 +9603,7 @@ in with self; { galigor = derive2 { name="galigor"; version="0.2.5"; sha256="1lfw1kikf90nv9g0xrb656fbilmxdk64zrzi43wrz7y2y55sd5xv"; depends=[cli crayon dplyr gargle getProxy magrittr purrr rappsflyer rfacebookstat rgoogleads rmytarget rstudioapi rvkstat ryandexdirect rym tibble tidyr]; }; galts = derive2 { name="galts"; version="1.3.1"; sha256="0jg0yng1kc6s0qdhq8ps38dsxdcrgdcn8dl2dlclw6rcbknb6h4k"; depends=[DEoptim genalg]; }; galvanizer = derive2 { name="galvanizer"; version="0.5.3"; sha256="1b9431mmgpqyd49b8nlsrlxjq9j9fyj73226bi9jic1p867533kk"; depends=[dplyr httr jsonlite lubridate magrittr rlang tibble tidyjson tidyr tidyselect]; }; - gam = derive2 { name="gam"; version="1.20.2"; sha256="1ndgnaq5fk1w6l6z93w5gd22887yxkykrchbdbx366qmz8v8wcyg"; depends=[foreach]; }; + gam = derive2 { name="gam"; version="1.22"; sha256="0gyrg73f63ccars1639n0gv6cnh8ixp7p7lgdxb2yjl240lk0c9i"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-7"; sha256="0zi9g2vxkn1hxc2qyyr1x8p1f9w7fc1j5dmm2mmm333gixkkz9nb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; gamRR = derive2 { name="gamRR"; version="0.7.0"; sha256="0zn8921a4i1lz5wpdfbd72pqb25r12abyqw7y2w53kfhdzs57f3l"; depends=[boot mgcv]; }; gamair = derive2 { name="gamair"; version="1.0-2"; sha256="1cjrd576l9md1jb1fc1y6iay5y49i0d8by024qsc7yik6f6mdl13"; depends=[]; }; @@ -9560,7 +9615,7 @@ in with self; { gameR = derive2 { name="gameR"; version="0.0.3"; sha256="09z10gavska02d6nfi36qlbl6ln25h83knrhib3n9c5bmycc8z8d"; depends=[]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; gamlr = derive2 { name="gamlr"; version="1.13-7"; sha256="0p0q77lkb5j9p1gd2z1n74pphx7h0lynzdamxrhz2w6bif1431wz"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="5.4-3"; sha256="0xih19zqgpjl5qv5j38ana6x29y84shn2jfl2lk4kaw3q7yx86b6"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlss = derive2 { name="gamlss"; version="5.4-10"; sha256="1cm0rvihniad309j26ll8kabndqzs3wdh5dak70b60z4kljrfx4c"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.1-6"; sha256="0g80bn0nszs2nmka6dypyvqnsgxp7mzhf5nd82n5x4jm3ca3dbdj"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; @@ -9568,7 +9623,7 @@ in with self; { gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; gamlss_dist = derive2 { name="gamlss.dist"; version="6.0-5"; sha256="03m275qvrmpzmc10hs48277kxp503riz8sz6xk9pkpj8n7gsz20g"; depends=[MASS]; }; gamlss_foreach = derive2 { name="gamlss.foreach"; version="1.1-6"; sha256="1bld98lfbgj1v6l4vq3yysg1lnvpgj2r9vykkfy0q1yipv2xbnqb"; depends=[doParallel foreach gamlss gamlss_data gamlss_dist glmnet]; }; - gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="1.0-0"; sha256="0z19jvgan08jijijcx5aswq2c4c5pbdyhhgb9idvhv7bir5qim06"; depends=[ellipse gamlss gamlss_dist gamlss_foreach ggplot2 ggridges]; }; + gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="2.0-1"; sha256="1nzjfki007zky79xwi1mld7pxl6yg8snxdyh3zd9prndnbj6c85s"; depends=[ellipse gamlss gamlss_dist gamlss_foreach gamlss_inf ggplot2 ggridges]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_lasso = derive2 { name="gamlss.lasso"; version="1.0-1"; sha256="03c8k6hl23ag98dihznfz1h0qc3pwxbnpv58pvmx3xbb3lipfjfb"; depends=[gamlss glmnet lars Matrix]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="6.0-0"; sha256="0b06nb6nq36ay0p5z57j5d4hrly5917wcsal7986mp1270iwnpip"; depends=[gamlss gamlss_dist nnet]; }; @@ -9599,12 +9654,12 @@ in with self; { gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gasmodel = derive2 { name="gasmodel"; version="0.1.0"; sha256="0xyhkafjyh6x87l79yz1g8byj6gdvppci46d4brl32gcf2n28kh8"; depends=[abind arrangements Matrix mvnfast nloptr numDeriv pracma]; }; gastempt = derive2 { name="gastempt"; version="0.5.5"; sha256="0pz580nhr9hnpzdi59l00jv34jmy5iyh5skbwslq6gzjdw3jgsf4"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; - gaston = derive2 { name="gaston"; version="1.5.7"; sha256="14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i"; depends=[Rcpp RcppEigen RcppParallel]; }; - gateR = derive2 { name="gateR"; version="0.1.11"; sha256="0c40wbymirc72l14hpz1gknhhhpinh7z50vdhbshi0iii6nlcmcr"; depends=[fields lifecycle raster rlang sparr SpatialPack spatstat_geom tibble]; }; + gaston = derive2 { name="gaston"; version="1.5.8"; sha256="1pv37csq3gvkld7hfxgbq72n35gx1wg3bvrcvzzzf0qsfb6g42cc"; depends=[Rcpp RcppEigen RcppParallel]; }; + gateR = derive2 { name="gateR"; version="0.1.12"; sha256="1yc400fq58zbl467rdr5rqsgf4gs9yalg7bibsdfdwh7wavd6zj0"; depends=[fields lifecycle raster rlang sparr SpatialPack spatstat_geom tibble]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.4"; sha256="0gwyrkxn4xd79cl60xa312k6nz17mdjdiym65dq7s2384fa80wbm"; depends=[]; }; gauseR = derive2 { name="gauseR"; version="1.1"; sha256="0jlbaylglyza6hlf62g3z0n349zlzlhx6g4jwdzg8b2sh4c3c9yn"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="0.1.8"; sha256="1k58x5ksf76ilj4h3qmknq60vq0mwwgxzllyh5r33jindn5q8nmh"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="1.0.0"; sha256="0xc7cp56f5a3y9pghhmpvqb67dbs11n3irla1xdzf06yddzndnb6"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-3"; sha256="04689l076agncsxqcbkx76z89cvjigs8p8v58p5kad655gjpqcx3"; depends=[orthopolynom polynom]; }; @@ -9632,15 +9687,15 @@ in with self; { gclm = derive2 { name="gclm"; version="0.0.1"; sha256="0b1nr8k8m48x78m6fkga11ikkcxyjsjpvqcd1lp6n9n4hv7akmfp"; depends=[]; }; gclus = derive2 { name="gclus"; version="1.3.2"; sha256="1cz0g0i972955hhaji30rx8448x7f3as7z1sww9i5h86ybgirilw"; depends=[cluster]; }; gcmr = derive2 { name="gcmr"; version="1.0.3"; sha256="0m4px1w41226clczzmnzal3hs0qwrvlhhdnkcxj1i7qp358ksxvm"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; - gconsensus = derive2 { name="gconsensus"; version="0.3.1"; sha256="0zray67q5saqs4n3k2v3hm7ly7hpfibvpvlzvqfhbfj98accm7in"; depends=[coda MASS rjags]; }; + gconsensus = derive2 { name="gconsensus"; version="0.3.2"; sha256="065i587611nh3fiaxlp88qzd12cjxpbdvxn8pvd99fmk88d809zs"; depends=[coda MASS rjags]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.1"; sha256="172a47dcd6virqxg15vanypi2lwkjb4n4k2pkpd75ybv0w6cqpcg"; depends=[sf]; }; + gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.2"; sha256="0k777x18w2r86jz5gk96fyjjyg7wd0phn57dwfq18kg9vrzs1d73"; depends=[sf]; }; gdalcubes = derive2 { name="gdalcubes"; version="0.6.2"; sha256="1fx1h2jwp2i72jky44arrlf37in3p8gv7ph6xn1f5qszrgmi4q48"; depends=[jsonlite ncdf4 Rcpp]; }; gdata = derive2 { name="gdata"; version="2.18.0.1"; sha256="1n9jw136kk5ld27qvny7cx2s8l34jdgmzlx40x62mmcqjddksbsy"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.0"; sha256="1xrncdmidzz9dv51bnbcrdh92im0lr97xi4rgb30p5sfxc4axml9"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-4"; sha256="0n50q4nghwdp70q69skn6s5vp366bz0fqavlq597267a18vsfnm6"; depends=[magick pdftools]; }; gdistance = derive2 { name="gdistance"; version="1.6"; sha256="1pjzslcnhqfs41zlxnwshq34pmnjh49lb239v74vjxq4rb2h5nrx"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.5.0-3"; sha256="1vj38p7l36znha56c9dfm75z8rfpjhpmhzrsp3sqiwpvb650mmk8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; + gdm = derive2 { name="gdm"; version="1.5.0-9.1"; sha256="10c4fk6pbd946is8h8cr8qblrq6cch5zhlhrxqd8ix5wknm8cqn8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; gdpc = derive2 { name="gdpc"; version="1.1.3"; sha256="1ba7ma1y4pxvx7byg19fzgpp1zswcihdaifyhb7zdadizxjzyj43"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; gdtools = derive2 { name="gdtools"; version="0.2.4"; sha256="0a1hqg5b484ji4g9dy0zi06wn9w7pk6hiy5ljzc1zgj9mbhlr21j"; depends=[Rcpp systemfonts]; }; @@ -9679,9 +9734,9 @@ in with self; { genderBR = derive2 { name="genderBR"; version="1.1.2"; sha256="19n3d6ps0wswq1bxgfqifq26svqf8q696im14wfglrl731mr0qbm"; depends=[dplyr httr jsonlite magrittr purrr tibble]; }; gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.9"; sha256="15dvx2f4nsmw1mgjfpcdcfnx8335fd043xb4hdnqcbjzf9h228bp"; depends=[annotate Biobase BiocManager GEOquery markdown R_utils xml2]; }; - geneHapR = derive2 { name="geneHapR"; version="1.1.1"; sha256="037yy4xpw5vfxbf0z12hdaibzzppbkbsyb0xgvj5hilwj4ar57jy"; depends=[ape Biostrings GenomicRanges ggplot2 ggpubr IRanges magrittr maps muscle pegas reshape2 rlang rtracklayer stringdist stringr tibble tidyr trackViewer vcfR]; }; + geneHapR = derive2 { name="geneHapR"; version="1.1.6"; sha256="0wh2778vwslfvcv85f86nsr086msm21p578grqpnrk2iivp3wp48"; depends=[ape Biostrings genetics GenomicRanges ggplot2 ggpubr IRanges maps pegas reshape2 rlang rtracklayer shiny shinyjs stringdist stringr tibble tidyr trackViewer vcfR]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; - genekitr = derive2 { name="genekitr"; version="1.0.3"; sha256="0s4hzfbc41pxlhc0ra4l6ip0zmzx8vr2xwklm3lmkqip6i7m00dq"; depends=[clusterProfiler DOSE dplyr europepmc fst geneset ggplot2 ggraph igraph magrittr openxlsx rlang stringi stringr tidyr VennDiagram]; }; + genekitr = derive2 { name="genekitr"; version="1.0.8"; sha256="1ymsyrk8vradb0yp02r9xrm944d6dwv8757sqg1rcr9n44lcr4p2"; depends=[clusterProfiler dplyr europepmc fst geneset ggplot2 ggraph igraph magrittr openxlsx rlang stringi stringr tidyr VennDiagram]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.1.7"; sha256="0b36nspq3kkad52k0viw1pdsf7h9h5ivi0ix7zg8i0z7vkhnm0cy"; depends=[Rcpp RcppProgress stringr]; }; @@ -9690,15 +9745,14 @@ in with self; { generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; generics = derive2 { name="generics"; version="0.1.3"; sha256="0lyhhwik0w7m5h3fbwl2f52gc1v2g6g6h6sc47sa9f58pxin213m"; depends=[]; }; genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; - geneset = derive2 { name="geneset"; version="0.2.6"; sha256="19a1ngw3916mykh2a99jaw80bpgrflqh6qs12mj7slgwih12g5px"; depends=[dplyr fst RCurl stringi stringr]; }; - genesysr = derive2 { name="genesysr"; version="1.0.0"; sha256="05jp8z7313r5wi9a5yw7fh198l7nd2ywzwg4f23yp4kfrkkgawn5"; depends=[dplyr httr jsonlite]; }; + geneset = derive2 { name="geneset"; version="0.2.7"; sha256="1fiyrlsy5zqmxdj71w5m0h70ln5b84y7mlhv2j8lad623gpng3l6"; depends=[dplyr fst RCurl stringi stringr]; }; + genesysr = derive2 { name="genesysr"; version="1.0.1"; sha256="0p1mzhwcffifph640qvb2g7qkj0gpjivsmwvih52fd9nwvqpmk9q"; depends=[dplyr httr jsonlite readr]; }; geneticae = derive2 { name="geneticae"; version="0.4.0"; sha256="0ka0m4dq8a9bzdk3gi7gj6dnc2a7c4chrzixw2g4qd7md31z33vx"; depends=[calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rlang rrcov scales tidyr]; }; genetics = derive2 { name="genetics"; version="1.3.8.1.3"; sha256="0lljxvz7nc6y2z303icphar2niir0i407w5cyhy2pwspd9gwkwpy"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.5"; sha256="07w6rf4a3d34j7dwz9zcxshg2sk1cd5v59xs3jxph17c9gga0nlq"; depends=[genieclust Rcpp]; }; genieBPC = derive2 { name="genieBPC"; version="1.0.1"; sha256="0zc0qbzj5a6rxzddw6jmk3rbbig09gcnb58003f4qkrm9mzc42gm"; depends=[cli dplyr dtplyr httr jsonlite purrr rlang stringr sunburstR tibble tidyr]; }; genieclust = derive2 { name="genieclust"; version="1.1.0"; sha256="1hwda0jkw67b6fnqpjl4axbaigbvlz0y2rfb7y06a8bhw2xq3mcy"; depends=[Rcpp]; }; genio = derive2 { name="genio"; version="1.1.1"; sha256="0cqn17k4is8lf8yym2h6l7nc51nzpx6br71z4bi12dm4ni0c0k6y"; depends=[dplyr Rcpp readr tibble]; }; - genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; }; geniusr = derive2 { name="geniusr"; version="1.2.1"; sha256="14flyjrnw3l4j02dnr8495r5xdsr83firz0irpqbxw0jrajbj5dq"; depends=[curl dplyr httr purrr rvest stringr tibble xml2]; }; genlasso = derive2 { name="genlasso"; version="1.6.1"; sha256="0bhpsz4qcvnmf09l1j6r94ljrdfxidjrsmggb3q4xvyf2xxnnbfx"; depends=[igraph Matrix]; }; genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; @@ -9722,12 +9776,12 @@ in with self; { geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; geoR = derive2 { name="geoR"; version="1.9-2"; sha256="1ndrah1aj996s3pdkixai5438xsfcfxcl21an9qxxa9kd8jzbqvw"; depends=[MASS sp splancs]; }; geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; - geoTS = derive2 { name="geoTS"; version="0.1.3"; sha256="12v50r2ym3nb21sskq7h4xsk6nzci06l9iync2ny91iwl7c9nrjc"; depends=[doParallel ff foreach iterators raster sp]; }; + geoTS = derive2 { name="geoTS"; version="0.1.8"; sha256="0hjhc68pl1gq9wcgvvagn903vlhwsayf7kka88rdcb6y7rgdlp5v"; depends=[doParallel ff foreach raster robustbase sp]; }; geobr = derive2 { name="geobr"; version="1.7.0"; sha256="0yx9mk5l2wh34xqg2v7p3p9hwdg2lpzd8bpgq4sm2qs0xk69sdw3"; depends=[curl data_table httr sf]; }; geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; geocmeans = derive2 { name="geocmeans"; version="0.3.1"; sha256="1h51sxn8clw62j0r5rk4zi7s1hyrjzslmgrv2lgwx4s816cdhy19"; depends=[dplyr fclust fmsb future_apply ggplot2 leaflet matrixStats plotly progressr raster Rcpp RcppArmadillo Rdpack reldist reshape2 sf shiny spdep tmap]; }; geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; - geodata = derive2 { name="geodata"; version="0.4-11"; sha256="02dhg84zzkf0hhh5nbj56w297ry4y8vpd7naimx5gkqfqh1qw21b"; depends=[terra]; }; + geodata = derive2 { name="geodata"; version="0.5-3"; sha256="1341wia70hmiaw4cwlld5x83mc10b85ji0mxfc75ar4w4yzplh6z"; depends=[terra]; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; }; geodimension = derive2 { name="geodimension"; version="1.0.0"; sha256="0mh16cdac7vi8zv98g3s06109fpadan441zd80x9yfsypx75sdz0"; depends=[dplyr generics magrittr pander readr rlang sf tibble tidyr tidyselect]; }; geodist = derive2 { name="geodist"; version="0.0.8"; sha256="09758v53r057rjsn844g2dc455ccndw1qlndl1xsm2gcp6ch2hr3"; depends=[]; }; @@ -9739,38 +9793,36 @@ in with self; { geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; geofi = derive2 { name="geofi"; version="1.0.7"; sha256="0x52g2d2h7rcz15bw5hdz2zzy1fbrajpdglmpbiij7mwwmpgc05d"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; - geohashTools = derive2 { name="geohashTools"; version="0.3.1"; sha256="0ks6ga1vsp5z7sy0xcq9nacffmfsx6yqdlnhqflsb8zb9qbygazf"; depends=[]; }; + geohashTools = derive2 { name="geohashTools"; version="0.3.2"; sha256="04xn0512b36rn473a8j025x5dqwi8kc45rr3iap5ai4wdcrb712z"; depends=[]; }; geojson = derive2 { name="geojson"; version="0.3.4"; sha256="0fvlw06hjb7z0mfsf8vhv1dchdjlvklyzjqlaydjzbwb1kvbhpq7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.1.0"; sha256="0yqmz5snl5mpkbp2m5nddvqy7y72kcpgzy3d5b55l4sfzh7wfg4d"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.10.0"; sha256="1laksjn2yh5lr8qd1j2vfkyvxyy2a0lylqs7cfc7vkpa7bbplrg2"; depends=[crul geojson geojsonsf jqr jsonlite lifecycle magrittr maptools readr rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; }; geojsonsf = derive2 { name="geojsonsf"; version="2.0.3"; sha256="1la6zfzv14ascwds0bp67d7x3am0v14mylc4b2lyd0nrf93a2p17"; depends=[geometries jsonify rapidjsonr Rcpp sfheaders]; }; - geoknife = derive2 { name="geoknife"; version="1.6.8"; sha256="0qxj86zb5zvjp9p235z16vkbydfykw3dx2xdcvkjcfxzg0c5ym3z"; depends=[curl httr progress sf whisker xml2]; }; + geoknife = derive2 { name="geoknife"; version="1.6.9"; sha256="1x2q3g31nha9dc96a0ch4pbxyx090wr4hndk704b5rm646ifv6pz"; depends=[curl httr progress sf whisker xml2]; }; geomander = derive2 { name="geomander"; version="2.1.0"; sha256="1ban8kss608fx4w64xl3m9zc1bf05alqfqrgv35rdrxw756iqv6a"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr rlang sf stringr tibble tidyr tigris]; }; geomapdata = derive2 { name="geomapdata"; version="2.0-0"; sha256="0mq7hxyyi1ikwdmh7ns9rnkvp2q5s48441i8msx8621scxdv6ga4"; depends=[]; }; geomaroc = derive2 { name="geomaroc"; version="0.1.1"; sha256="09j48ms1j7sqakznd2bj6sks1b6ckhch7ydhbdky4jk2acvl7lqw"; depends=[jsonlite sf]; }; - geomerge = derive2 { name="geomerge"; version="0.3.2"; sha256="1i6n88k8icwihr9w7ipjb50f68zad602dipb3hd887y4kyf14wni"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; + geomerge = derive2 { name="geomerge"; version="0.3.3"; sha256="043dg8q9jjfql4wlya17zqz33wg6c6crvxbsq3srlp7mppvapylh"; depends=[geosphere ggplot2 gridExtra lubridate raster scales sp spdep]; }; geometa = derive2 { name="geometa"; version="0.7-1"; sha256="18gr82k665y00h8mrq97mrr9l7p4m9m8b49dbgsh22hbz7j7c542"; depends=[crayon httr jsonlite keyring R6 readr XML]; }; - geometr = derive2 { name="geometr"; version="0.2.10"; sha256="00yhw6k9wj3q0mmhwrjvhybsz5fcx86ms5n1q2l492jljplp46cr"; depends=[checkmate crayon deldir dplyr purrr raster Rcpp rgdal rlang sf sp tibble]; }; geometries = derive2 { name="geometries"; version="0.2.0"; sha256="05036q4dccmmd955g4n2s5ncc9zxd9v9qyamszszwn147i7hkxcc"; depends=[Rcpp]; }; geometry = derive2 { name="geometry"; version="0.4.6.1"; sha256="0wplszaxi6phxffp3zww5alwnfbh9521qi43h65w057lrm1pmj2j"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; geomorph = derive2 { name="geomorph"; version="4.0.4"; sha256="02kbihr5r0zj24x499zhfvpqx7zadyhxmznnq0fvy1mwf28d5pnz"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geomtextpath = derive2 { name="geomtextpath"; version="0.1.1"; sha256="0i5m1v8mn23krp7ha502v3kv5wpwdy8na4x3nqlg3zld293dybz4"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; geonapi = derive2 { name="geonapi"; version="0.6-1"; sha256="1gmz05nwqbx4dc3zpd58an86101r6345cja386dgi2hyggg5cqbn"; depends=[geometa httr keyring openssl R6 XML]; }; - geonet = derive2 { name="geonet"; version="0.7.3"; sha256="0kp0a1bd8yyvp8w044arawyfmxwmqln3dqk0jzvz1vhbhldgy27s"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; }; geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; geos = derive2 { name="geos"; version="0.2.2"; sha256="0hmiskdwzlgabwhayw7hwi6nqria976xzz6xm95644w7fx723wd7"; depends=[libgeos wk]; }; geosapi = derive2 { name="geosapi"; version="0.6-4"; sha256="1h3yfhp68i4zm53mgpfq323fw3v9c3z5va2y296jgwhazypjhz9r"; depends=[httr keyring openssl R6 readr XML]; }; geoscale = derive2 { name="geoscale"; version="2.0.1"; sha256="1ykzxbwjdy0xi5hj5r201j3wrgahcxvxrgp40mqlw7zj80wgdgif"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; - geosimilarity = derive2 { name="geosimilarity"; version="1.1"; sha256="1pailxz87f50p7w8r2ryb7zsvwzgiz1l4iwj47kj633h5vbakx5r"; depends=[SecDim]; }; + geosimilarity = derive2 { name="geosimilarity"; version="2.2"; sha256="1mkab3377r04zybqsswakcgqwgby9iwb8bhxkr8s27blxha44jcp"; depends=[DescTools dplyr ggplot2 ggrepel SecDim]; }; geospark = derive2 { name="geospark"; version="0.3.1"; sha256="004axa0k9xg1hra8jihwgnc379k8pib1h0zkr82j0m9sii4wrk6r"; depends=[dbplyr dplyr sparklyr]; }; - geosphere = derive2 { name="geosphere"; version="1.5-14"; sha256="0bg4vfmrw140j2ax0p6bflvb77w03ir39wa87l96rj473jpa9hzj"; depends=[sp]; }; + geosphere = derive2 { name="geosphere"; version="1.5-18"; sha256="1h6sqvxwxv22js6hz4s8sjk50ygw0y34icbbbdb2v36ca3q6zzwr"; depends=[Rcpp sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="1.0-1"; sha256="1n1jvigavcxlbc5wki74lnhax3060i44m1cvkcr664wsjqhx3kl2"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostan = derive2 { name="geostan"; version="0.4.0"; sha256="1lp1bfpcj7809wmw9hkdzqxdfld9vlr3g5x1m0zhi61zz6g73nld"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; + geostan = derive2 { name="geostan"; version="0.4.1"; sha256="0ld8mhlii8hrzlxqm9wj4kzwafink5zm45mah804qa7p4i78l363"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; geostats = derive2 { name="geostats"; version="1.5"; sha256="18f4b6l2qm72dc561q304azi5z4nrlg99zzgkxc406473qadqy0w"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; geotopbricks = derive2 { name="geotopbricks"; version="1.5.4"; sha256="1mn15mchxkv9qqjrcsyx0pf56sdz0ba7i5jd1ci1ilr6rig81ckz"; depends=[raster rgdal stringr zoo]; }; @@ -9780,7 +9832,7 @@ in with self; { geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.7"; sha256="03573110wrmr9m2zvcmqqhrlm8k24x1z1vslyry75bcs2jm8fk4z"; depends=[broom data_table ggplot2 ggrepel mathjaxr minpack_lm plyr Rdpack]; }; - gert = derive2 { name="gert"; version="1.9.1"; sha256="1p8z5qap06qf680r25y78wgnprzl9ib3xp3kvsw01bh819v1h7bm"; depends=[askpass credentials openssl rstudioapi sys zip]; }; + gert = derive2 { name="gert"; version="1.9.2"; sha256="0pk6mf300kh6wwzvaqymwzlikkbf8zj0xpslgyydn7zvr95ipjj2"; depends=[askpass credentials openssl rstudioapi sys zip]; }; gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.2"; sha256="0i7a927mbll8mlisxb0ic62fvq1wp5v0m69n7zkhcjabkxr7gbn3"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; gestalt = derive2 { name="gestalt"; version="0.2.0"; sha256="0p8xrlmc81irh9s2c57sxgmvdjmmgmya0h31904c4cwi9aa32f4z"; depends=[rlang]; }; @@ -9792,11 +9844,10 @@ in with self; { getProxy = derive2 { name="getProxy"; version="1.13"; sha256="0n8ja0i1v0cd2piqyx4hfc4qw18d535j3ffpz164c3r8cmppnqzd"; depends=[cli httr]; }; getable = derive2 { name="getable"; version="1.0.3"; sha256="0v45nqpx55vbj68gj4wxr0bdlrl897ayac78rxjd2lkkjx49hlyh"; depends=[knitr]; }; gethr = derive2 { name="gethr"; version="0.1.0"; sha256="0kpi9b9yg2nh332zkml24pmj6vgjfh8mrfjjg5a636s2rg98g5g7"; depends=[httr jsonlite]; }; - getip = derive2 { name="getip"; version="0.1-0"; sha256="0l7692ddgidy3jyg7mw5nnh0agkyj7pf8v8clcinzs2y3q5qic6f"; depends=[]; }; + getip = derive2 { name="getip"; version="0.1-2"; sha256="0qk994ip5d4m827n0lz6lhpvdbmz2gqpl4513r82s7ckkzg2rvyp"; depends=[]; }; getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.2.2"; sha256="100m5cbwx9anlh1hzjv7d1h1viqsxb0bx0ksc1dsjx3gqrf77q1n"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.3"; sha256="0zzmzgwl9a4y3s34600vmih22d6y32294f9bvxrnmffnvkgmy7sk"; depends=[]; }; - getpublist = derive2 { name="getpublist"; version="0.1.0"; sha256="0p6l7qha6i7vhqvav74yxpa6qph35g41v00173mjjqsvyhd0qc5i"; depends=[dplyr magrittr rvest stringr tibble tidyr xml2]; }; gets = derive2 { name="gets"; version="0.37"; sha256="1h7hn8n08sqnygbzyiq9zg11b5i9g6islc72c0qypx4j4wba5z55"; depends=[zoo]; }; getspres = derive2 { name="getspres"; version="0.2.0"; sha256="190y4qrm1wawp0787zhw3g8h9s2smacvvxbs70pxbhysq4bkzcdd"; depends=[colorRamps colorspace dplyr metafor plotrix RColorBrewer]; }; gettz = derive2 { name="gettz"; version="0.0.5"; sha256="0dgzw5mji5983588vj6q2kyjv9dngmrd0ilrkhfc3b4ngvfq61mf"; depends=[]; }; @@ -9815,6 +9866,7 @@ in with self; { gfpop = derive2 { name="gfpop"; version="1.1.0"; sha256="0kqvna57q8a1ybzj5svw1k5qvnpd9n7c0jg6gyx1y00si3vazd84"; depends=[Rcpp]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; + ggChernoff = derive2 { name="ggChernoff"; version="0.3.0"; sha256="0dkr3vl4a3css19j53x1c1gxxgjg57d444ahxrrrxsyva49lnq1y"; depends=[ggplot2 scales]; }; ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; }; ggDoE = derive2 { name="ggDoE"; version="0.7.8"; sha256="1732jbrqhygip1g8l7zlsz57bqkmandh15w5r94nm1g6s48f7aak"; depends=[data_table ggplot2 insight]; }; ggDoubleHeat = derive2 { name="ggDoubleHeat"; version="0.1.1"; sha256="0s9dpjkphmavvhcrsdjr7i4nq39cp55k43y6jhkx2glc198a73fq"; depends=[ggnewscale ggplot2 rlang]; }; @@ -9830,6 +9882,7 @@ in with self; { ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.2"; sha256="0sd39svwi3ai81szahd49a8qvsydi1922z4q6r2r70fpbfwi4qrq"; depends=[data_table ggplot2]; }; ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.2.2"; sha256="1l4cincm7c2q9x3djiv1lm9bvivaqk7kincx19b8f760wz9hp74k"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf tibble yulab_utils]; }; + ggalignment = derive2 { name="ggalignment"; version="1.0.1"; sha256="1rqndv1xqz350v6a23pfrl4zkwjyh4zg633kwcxnv57v0g01mmif"; depends=[dplyr ggimage ggplot2 magrittr rlang]; }; ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; ggalluvial = derive2 { name="ggalluvial"; version="0.12.3"; sha256="0mkan9gxg3yxjism22yxbhvlh2lh7wpbrqpb355za790prcmjbh3"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; @@ -9838,21 +9891,21 @@ in with self; { ggarchery = derive2 { name="ggarchery"; version="0.4.1"; sha256="12wikn28pm6mvl87f91fn21dayrs2jjy5wqy7mba0lnc1zkszd0y"; depends=[dplyr ggplot2 glue magrittr purrr rlang tidyr]; }; ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; - ggblanket = derive2 { name="ggblanket"; version="1.5.0"; sha256="18690ayh9y219xxs1x2aa9pf8w508vzgsyz4g8fbikrw7vwp8m4w"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase tidyr tidyselect viridis]; }; + ggblanket = derive2 { name="ggblanket"; version="1.6.1"; sha256="1yjmyjs1s50zds5qmlvi8j0q3d97sivd4ra2b7418wm7qnkl9zjz"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridis]; }; ggborderline = derive2 { name="ggborderline"; version="0.2.0"; sha256="1acb3z2dwasmn4ngc7wqk3y4n34ah3fhdxsbdl3dmbc75nmdsn5a"; depends=[cli ggplot2 rlang vctrs]; }; + ggbrain = derive2 { name="ggbrain"; version="0.8.0"; sha256="1c5lcmvsgjvwabwvkq7g19p35fzb25q5919ia1adzqfwr8a2zhpy"; depends=[checkmate data_table dplyr ggnewscale ggplot2 ggrepel glue imager Matrix patchwork Rcpp RcppArmadillo rlang RNifti tibble tidyr tidyselect]; }; ggbreak = derive2 { name="ggbreak"; version="0.1.1"; sha256="1jscvyphjx837lbb9mxdqaaknkp8krgapak91ykv1xv150xwr7cs"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; ggbump = derive2 { name="ggbump"; version="0.1.0"; sha256="15cnzv2q3gylkmd1zj044cp14ldnkc4fzwmxaqpc8cagwf9i10zk"; depends=[dplyr ggplot2 purrr tidyr]; }; ggchangepoint = derive2 { name="ggchangepoint"; version="0.1.0"; sha256="0brd9z8wj563j2kcx12bz4kyg2ynppxx5cz8k23xli1qijlib98p"; depends=[changepoint changepoint_np dplyr ecp ggplot2 Rdpack tibble]; }; ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; ggcleveland = derive2 { name="ggcleveland"; version="0.1.0"; sha256="1pl9qhj7p5kflx0ni59hq1k9afqchghg5wig9v1ml5pqrjz70pxa"; depends=[dplyr egg ggplot2 lattice magrittr readr rlang stringr tibble tidyr vctrs]; }; - ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.4"; sha256="186a0mpdpipp24fjbd52l1gdgpqm6vl83ff8069d8nngyqbrx0jr"; depends=[ggplot2 reshape2]; }; - ggcorset = derive2 { name="ggcorset"; version="0.3.0"; sha256="1md6krsq4qmdix4x141azyaa02f64shzkw591zz9ay7jhpx70r59"; depends=[dplyr gghalves ggplot2 ggstance]; }; + ggcorset = derive2 { name="ggcorset"; version="0.4.5"; sha256="18i7xj3h0v556y2m7b1cnlqhzfp9jv5gpchhz5rmm8d6y3k4czii"; depends=[dplyr gghalves ggplot2 ggstance]; }; ggcoverage = derive2 { name="ggcoverage"; version="0.7.1"; sha256="088gyc6054d8xx3k3pg5i40cnvyryyq4k6rn214li0yslj3fphyi"; depends=[Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggbio ggh4x ggplot2 ggrepel IRanges magrittr patchwork RColorBrewer reshape2 rlang Rsamtools rtracklayer S4Vectors scales seqinr]; }; ggdag = derive2 { name="ggdag"; version="0.2.7"; sha256="1p31806zm2fg8b3lq1v1j0k4bzak0yi73sqzc0gm7piwqswfny70"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr rlang stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; - ggdemetra = derive2 { name="ggdemetra"; version="0.2.2"; sha256="1j0nwmv2acyrkpn230jj6yf5nnl40kpqdqaglrnrfqw5rp357krp"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; + ggdemetra = derive2 { name="ggdemetra"; version="0.2.3"; sha256="1vyjg7kzf9xq0kxrcjzr2nmd74dc35i9kpahz1wf9jvvq8l33w60"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; ggdendro = derive2 { name="ggdendro"; version="0.1.23"; sha256="1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs"; depends=[ggplot2 MASS]; }; ggdensity = derive2 { name="ggdensity"; version="0.1.1"; sha256="05brrczlvrqkcjizla920490h3fbcfldpysrv7xj4jy7hpzwfn16"; depends=[ggplot2 isoband MASS scales tibble vctrs]; }; ggdist = derive2 { name="ggdist"; version="3.2.0"; sha256="0ihy27d45gifxn8yc9w5g3cn3kmbk268mxipmvmdd0mjxgcqkj89"; depends=[distributional dplyr ggplot2 glue HDInterval numDeriv rlang scales tibble tidyselect vctrs withr]; }; @@ -9862,23 +9915,23 @@ in with self; { ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; ggeffects = derive2 { name="ggeffects"; version="1.1.4"; sha256="1j3l5v00f3xx2pwwfg1z9y31h8qja88nx7lycwj1y55ry5i6drr1"; depends=[insight]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; - ggetho = derive2 { name="ggetho"; version="0.3.6"; sha256="1iv0vad8y85bvz8rx0flqyrb38d79j9fhmd6ay5siyccigi88clj"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; + ggetho = derive2 { name="ggetho"; version="0.3.7"; sha256="0bdqx3x42jp22bs297nhdgzvywhq4cy0lwmwprl7vmjjh8lwvkxk"; depends=[behavr cli data_table ggplot2 labeling rlang scales stringr]; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; }; ggfittext = derive2 { name="ggfittext"; version="0.9.1"; sha256="0yckj6awx42yrlv7lfq9jplnzqv5lpvgmb0327bx14pc3q36055f"; depends=[ggplot2 shades stringi]; }; ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.4.1"; sha256="0wqq8l7lq96k4w0vq12jcg7clvgia8s35jjbqq1s0py4cgxijhml"; depends=[cli ggplot2 gtable lifecycle MASS polyclip Rcpp RcppEigen rlang scales systemfonts tidyselect tweenr vctrs withr]; }; ggformula = derive2 { name="ggformula"; version="0.10.2"; sha256="0xb39gjn6q7va1d1fhvf2dw9428s1q13wasx4y3cz2f0lls1r2wl"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; - ggfortify = derive2 { name="ggfortify"; version="0.4.14"; sha256="038m74azpy43869ax1yi6wxbl1kr59iaxl8raiikjg749vcx6njw"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; - ggfun = derive2 { name="ggfun"; version="0.0.7"; sha256="0x71p3mm0sw72hv92368wy2yiy7zv826p3kddpwndqv1bywmyfx8"; depends=[ggplot2 rlang]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.15"; sha256="1cfwv8jjy1yk0l5wnp48ql1javvrzq1wnh1lv49xp6rynz00lxm8"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; + ggfun = derive2 { name="ggfun"; version="0.0.9"; sha256="04kn367mzgrfwnwz97vw5jqp2kig94hmxmhyyic7ddvk3sfhwx2w"; depends=[ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.1"; sha256="1lys5lzlilzvd6dm7rkxv7nvnp80fajl5yzhpwcbb5az5832ik27"; depends=[ggplot2 gtable magick ragg rlang]; }; gggap = derive2 { name="gggap"; version="1.0.1"; sha256="1iidxm7qcrg0isw2q27cmjbfb3pkfj5jcg1nj8lgy6xmydw3vrw3"; depends=[cowplot ggplot2]; }; gggenes = derive2 { name="gggenes"; version="0.4.1"; sha256="1s4knz2g06w46jbi037l9ii0kkxvl7gnljp54s4z36hnswsrv8jk"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; gggibbous = derive2 { name="gggibbous"; version="0.1.1"; sha256="1sy9d9hl04b13yz4563bzsdznjdh3xmikdrsqg8kdv8wn481lqbd"; depends=[ggplot2 scales]; }; gggrid = derive2 { name="gggrid"; version="0.2-0"; sha256="0g8msi5qpnr2npcgjvdjncrq6p61ddpzasy5g0fxqbybbpfxsyi8"; depends=[ggplot2]; }; - ggh4x = derive2 { name="ggh4x"; version="0.2.2"; sha256="11mskrby3gyjhkvnkcwl2ar1bdh4h45y48dfnm4kzgc7nwvdl3ia"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; + ggh4x = derive2 { name="ggh4x"; version="0.2.3"; sha256="0da5r8zfx1ixhk266byspfm2aifhm0jrvbk264xya712pxayiw4a"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; - gghalves = derive2 { name="gghalves"; version="0.1.3"; sha256="1lj4c38fzxwg8gy57ymf00lqjdplb7v2a0lnd262c1d5cavqiws4"; depends=[ggplot2 gtable]; }; + gghalves = derive2 { name="gghalves"; version="0.1.4"; sha256="1qsxq2zbz4zcpqc7949apznn9f2c959jwwx010bl4gf2p6vchfx7"; depends=[ggplot2 gtable]; }; gghdr = derive2 { name="gghdr"; version="0.2.0"; sha256="1id0ky2mf656xqsmg76f627zw8iff4q1wzgih32nryk0hfvm2gfi"; depends=[digest farver ggplot2 hdrcde scales tibble]; }; ggheatmap = derive2 { name="ggheatmap"; version="2.2"; sha256="13cf3xk5drb6dfr3gcbgfi0hk6akk9b3g9f3c2jy6hz8rz5xnyn6"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; gghighlight = derive2 { name="gghighlight"; version="0.4.0"; sha256="0vfcn3gg6j7g20n2z1iwr94jnpqn0zl5j9jfc8bnbsrmz49dzqpd"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; @@ -9887,17 +9940,17 @@ in with self; { ggimg = derive2 { name="ggimg"; version="0.1.2"; sha256="1ynfq8lwlw851j00k7mm63w5yyqkd7v67fs8g2nwxk7ac0wb44ph"; depends=[abind ggplot2 jpeg png]; }; gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.1.1"; sha256="0rwg9yan73ca4s8nd8x6xyjs68mvz4lxns5xmkvb8lf0fs9pkahn"; depends=[ggplot2 magrittr rlang stringr tibble]; }; - ggip = derive2 { name="ggip"; version="0.2.2"; sha256="1mqjd3bf05dln15s3qlf508260dzz888sm3n0a2ghd67x5jnxpqi"; depends=[dplyr ggplot2 glue ipaddress Rcpp rlang tidyr vctrs]; }; - ggiraph = derive2 { name="ggiraph"; version="0.8.3"; sha256="0vq5ymgnipzflgzhm880kyyrp784v6fvndmffzzn2q0pfjj772rr"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid]; }; + ggip = derive2 { name="ggip"; version="0.3.0"; sha256="1wh7yj445152p9ynq2l1cp1cm2si88s3dbb9qpszimlzgqvzv8la"; depends=[cli dplyr ggplot2 ipaddress Rcpp rlang tidyr vctrs]; }; + ggiraph = derive2 { name="ggiraph"; version="0.8.5"; sha256="1fnv4bsm2avgaklmsbqs1gbixipifb8sfwiwnrbnsqycqh56n6wc"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.3.0"; sha256="0q8ppixw5i1hpphmswpw6lvq7gx8rx4gfs2b8d31wbn32ziiv2rk"; depends=[dplyr ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr]; }; ggisotonic = derive2 { name="ggisotonic"; version="0.1.2"; sha256="1jz1qhx51gzq6lbk24pjxc55nhzc6alsy9h870jn88mn9fpx4lhp"; depends=[dplyr fdrtool ggplot2]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.5"; sha256="12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"; depends=[]; }; - gglgbtq = derive2 { name="gglgbtq"; version="0.1.0"; sha256="1a5hnmmiw3prqg8w34da0g9x59a7zywlp1fcn6bdv589m68kbx53"; depends=[ggplot2]; }; - gglm = derive2 { name="gglm"; version="0.1.0"; sha256="12bqqh9614v0cv45czqh6w0in4hbhwmicvcw8l07zdhrn9aq7y9m"; depends=[ggplot2 patchwork rlang]; }; + gglgbtq = derive2 { name="gglgbtq"; version="0.1.1"; sha256="0z03rckalci6g9cd69mz3b7mz8q5z8313ci0q0qcfpkvfxmrz2py"; depends=[ggplot2]; }; + gglm = derive2 { name="gglm"; version="1.0.0"; sha256="1aq49lvscgxbf8nzxb67bzrn86lb02qg189qpgmvhdlynhzry05h"; depends=[broom broom_mixed dplyr ggplot2 metafor patchwork purrr rlang tibble tidyr vctrs]; }; gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; - ggmap = derive2 { name="ggmap"; version="3.0.0"; sha256="13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"; depends=[bitops digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rjson scales stringr tibble tidyr]; }; + ggmap = derive2 { name="ggmap"; version="3.0.1"; sha256="0pg38zyxv1j6mwdwdqljynqrg7zjwqpsh65xdwmvbl0zgxa4p0pw"; depends=[bitops cli digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rlang scales stringr tibble tidyr]; }; ggmatplot = derive2 { name="ggmatplot"; version="0.1.2"; sha256="0k062kqa9hrq1iyjwjj670sdk559zx1nxpbkk0sxkda2h235lxjr"; depends=[ggplot2]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.5.1.1"; sha256="1y6ya2qihm8h6ds84akhmsxn9c8jriw03wakaqzsmi21agz87n21"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmice = derive2 { name="ggmice"; version="0.0.1"; sha256="06asqqzjnlx8hl63nfl83l8x1bga59vhn4x2sl8j0v6bmcj0fnqm"; depends=[dplyr ggplot2 magrittr mice purrr rlang stringr tidyr]; }; @@ -9906,24 +9959,24 @@ in with self; { ggmotif = derive2 { name="ggmotif"; version="0.2.1"; sha256="1pqkl5zw4v6b81nbxcrpz44sjs4j65iw23j9xiy4d7yqj1bx7604"; depends=[ape cowplot data_table dplyr ggplot2 ggsci ggseqlogo ggtree magrittr memes patchwork stringr tidyverse treeio universalmotif XML]; }; ggmr = derive2 { name="ggmr"; version="0.1.1"; sha256="0941rvh7m5knlhp0m0mhm4j8spmch0pyvwhzs3bycq3vzlvzv1w7"; depends=[MASS]; }; ggmuller = derive2 { name="ggmuller"; version="0.5.4"; sha256="0y7bm9fm5i8acpy6fa903ca2r9yasky7kg2hicm4xz5ni09jm20x"; depends=[ape dplyr ggplot2]; }; - ggmulti = derive2 { name="ggmulti"; version="1.0.5"; sha256="1dgx161xsnvv2bg5ja2caxyc9sc6wahx4gwc3nk70m3nq9ibmqva"; depends=[dplyr ggplot2 tidyr]; }; + ggmulti = derive2 { name="ggmulti"; version="1.0.6"; sha256="0cynzl5aamm8ra6jz3j6n2frd680f35p3f38gcx12zsk1vzsl4fr"; depends=[cli dplyr ggplot2 tidyr]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.10"; sha256="0gqdgy5yh700dg0f7xb80hczlnqfisn8l55j7amd1n7fp2x5sr8v"; depends=[ggplot2 ggrepel igraph network sna]; }; ggnewscale = derive2 { name="ggnewscale"; version="0.4.8"; sha256="004p5ai6rc5y8f6966k894jzw9v3m4zy36z50yapig7c85lzmzn7"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; ggnuplot = derive2 { name="ggnuplot"; version="0.1.0"; sha256="0i09ybmxdjyr15z1a651k3bkbqskri4ipcyjap93020zbfv05r9c"; depends=[ggplot2]; }; ggokabeito = derive2 { name="ggokabeito"; version="0.1.0"; sha256="07lbzq87zl2yswidp0f90l8szl7y4wwn8psgacyl90wn2gd9mdcp"; depends=[ggplot2]; }; ggpackets = derive2 { name="ggpackets"; version="0.2.1"; sha256="1fdyr0m5rf1wy2pydvk12g7lw338iw026rxz98mv8kryrs32q7kh"; depends=[ggplot2 rlang]; }; - ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; }; ggpage = derive2 { name="ggpage"; version="0.2.3"; sha256="1qi8ydq3fxb1smk0jg9z1cv2xjq8c1lsnmz8l7c61rvdbjm3710v"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; }; ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; }; ggparty = derive2 { name="ggparty"; version="1.0.0"; sha256="0s6hr5p930kl3pj6ajwgwqz6yikc3l9hhzy1yn0nqc0r8pp2jyqf"; depends=[checkmate ggplot2 gtable partykit rlang survival]; }; ggpath = derive2 { name="ggpath"; version="1.0.0"; sha256="065h4yzg3x9c14393222vakskg3bzi5j6ys96wszls3sy35v1rvg"; depends=[cachem cli ggplot2 magick memoise rappdirs rlang]; }; - ggpattern = derive2 { name="ggpattern"; version="1.0.0"; sha256="09djvwdzvmqj6jk56vspbcvp598vkb9zvyvf83ym5mfp05yf3sf7"; depends=[ggplot2 glue gridpattern rlang scales]; }; + ggpattern = derive2 { name="ggpattern"; version="1.0.1"; sha256="1b9bfxlg64gr39bz58fp6jmg4nziwk8rk94rzpjsqhfhpwi2lrgr"; depends=[ggplot2 glue gridpattern rlang scales]; }; + ggpcp = derive2 { name="ggpcp"; version="0.2.0"; sha256="1xkxsxnxcyy8rrazzbl38g405cxjjjz6a720cdm4bsk03q2q4rar"; depends=[assertthat dplyr ggplot2 rlang tibble tidyr tidyselect]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.2"; sha256="14x8gg54l18z12cgvka2qf1clhi8zlma5xb71yl4j32gbffhpybp"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; - ggpie = derive2 { name="ggpie"; version="0.2.4"; sha256="15r8cx07y0glwvb5xlqdkxfrxcwhwlp6w6ah13z96mgdpvqh0p3i"; depends=[cowplot dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; + ggpie = derive2 { name="ggpie"; version="0.2.5"; sha256="11c431ggrhyxiql1v9qajp568jri6hlp1kgl334j4f7sgyh73ng5"; depends=[dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; - ggplot2 = derive2 { name="ggplot2"; version="3.3.6"; sha256="1aa377jdfajj8ld2fh159y8havlibsr4pjisf6mkzk8g5awlxjxz"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.4.0"; sha256="0gj7n2y8msnmhk3x4r481biknvn2dqhahwazfqwr8f3lz599wbx8"; depends=[cli glue gtable isoband lifecycle MASS mgcv rlang scales tibble vctrs withr]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; @@ -9935,9 +9988,9 @@ in with self; { ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolar = derive2 { name="ggpolar"; version="0.2.2"; sha256="18m0nd74cz30gr961404wnib5v2wddpf1iv453s5dri0vxlmdl6w"; depends=[ggplot2 rlang]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.2.0"; sha256="1ii9a0f0aniwf989n72dy9bh9f708qxhdy5xgml23ln6n4wf9wr0"; depends=[ggplot2]; }; - ggpp = derive2 { name="ggpp"; version="0.4.5"; sha256="02inwvfz2zxsj7bq0nz11c5spnyaf8zhjnlfllpwfjfy46qrx2p9"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; - ggprism = derive2 { name="ggprism"; version="1.0.3"; sha256="09dh0r8r5s61i5dbk6rswajc2vm7k8wvlqyvzq8wr160676lycjp"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; - ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; + ggpp = derive2 { name="ggpp"; version="0.5.0"; sha256="0zmxnzsdmwv9v77fifgiknalwif59261kslq8848x1xch8f82l77"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; + ggprism = derive2 { name="ggprism"; version="1.0.4"; sha256="0ycklp7764cw65hqh9r61im8vqfd7sjayyw1gvprxzg7k217gnl3"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; + ggpubr = derive2 { name="ggpubr"; version="0.5.0"; sha256="0fbm3rcpsabb7j7sdr69scqiq1bnx2623ji9ap9v4rmqqy8s08gv"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.5"; sha256="09wjfkmsh165xiw1dab6c8qb9wrnzm1q1sbfnbzyg99wsk480bgy"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.2.2"; sha256="15rla5gi6m10dsmx501wfhs4lfa1wf007nimyr22qbcabd7277zc"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; ggquiver = derive2 { name="ggquiver"; version="0.3.2"; sha256="1nzqfm9byr0bmj0l6fdf8afymbhc6qjq5iff3wnng7gqqaa9s6dc"; depends=[ggplot2]; }; @@ -9945,37 +9998,39 @@ in with self; { ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.2"; sha256="0jl4bmhsisqc7nam8r027lr1qp0yr6bvdiyycknp7bkl65cg2x1z"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ggrastr = derive2 { name="ggrastr"; version="1.0.1"; sha256="07sx5wlawfyb0zy5am2q1ajhkdym5r9ih47p57l8bv4dlc7ykml2"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; - ggrcs = derive2 { name="ggrcs"; version="0.2.4"; sha256="193alhp305flr1pbpi7szp6i2h1idalfd4z7n2fpbhwnkdxpvhv4"; depends=[ggplot2 rms scales]; }; - ggrepel = derive2 { name="ggrepel"; version="0.9.1"; sha256="1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9"; depends=[ggplot2 Rcpp rlang scales]; }; + ggrcs = derive2 { name="ggrcs"; version="0.2.6"; sha256="1hvyvvm6nlgqfh7lmgqyqsi2gy43k5n5a6205hx85da9h9qw8n8s"; depends=[ggplot2 rms scales]; }; + ggredist = derive2 { name="ggredist"; version="0.0.2"; sha256="1p5bzqi4g5ri0m0nlwra6vps4sil7qc56cd8nzp0xh7k1gl598ig"; depends=[ggplot2 scales]; }; + ggrepel = derive2 { name="ggrepel"; version="0.9.2"; sha256="123lh86qs7w1i3v8i1a08jxlwx4sy32bpznyclm8wlkph728hc0a"; depends=[ggplot2 Rcpp rlang scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.4"; sha256="0lfqx21g09s3fp74mld47qfx1nnav18xqj37griyqk406hh1rxrb"; depends=[ggplot2 scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; ggroups = derive2 { name="ggroups"; version="2.1.2"; sha256="0fb6awfm4vn67pgmz50fljvp9mfxx1q29pirgv04dya8751srxgi"; depends=[]; }; ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; + ggsector = derive2 { name="ggsector"; version="1.6.6"; sha256="0qaf8wl1mmwl3razyif08sh329p9j1jgqc0ls5szqirq3db4315i"; depends=[dplyr ggplot2 magrittr Matrix prettydoc rlang Seurat tibble tidyr]; }; ggseg = derive2 { name="ggseg"; version="1.6.5"; sha256="0495g3l71lagrmz3s3lxy4rkfr7gin8vn1m59fvcv7hmycn39i0k"; depends=[dplyr ggplot2 sf tidyr vctrs]; }; ggseg3d = derive2 { name="ggseg3d"; version="1.6.3"; sha256="1rpq2wgyyladz5nkngkvbf3cy4pw212dj1vfh7ksh0bxi7v1k6mh"; depends=[dplyr magrittr plotly scales tidyr]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggseqplot = derive2 { name="ggseqplot"; version="0.8.1"; sha256="1m4n4qfl21dafkl27ajvxj5vw99z9282qzcqk03z90nsnydbqm2r"; depends=[colorspace dplyr forcats ggh4x ggplot2 ggrepel ggtext glue patchwork purrr Rdpack tidyr TraMineR usethis]; }; - ggshadow = derive2 { name="ggshadow"; version="0.0.2"; sha256="08bnjl7zsa4kkjl4kadmwss84bngd36xqqly91lvv359qrzr9hzq"; depends=[ggplot2 glue rlang scales]; }; - ggside = derive2 { name="ggside"; version="0.2.1"; sha256="1vl7kzgmi5xxxsqvyg4cm4xwd3lfjgysay1lw6hri5vj22mnga5h"; depends=[ggplot2 glue gtable rlang scales tibble]; }; + ggshadow = derive2 { name="ggshadow"; version="0.0.5"; sha256="0cakz31hp97kdvdcyrp9p03nz81kypsn9sn6nxl7kb0n3rrrlav0"; depends=[cli ggplot2 glue rlang scales vctrs]; }; + ggside = derive2 { name="ggside"; version="0.2.2"; sha256="1z50z4xpxfpqdz26hja6xw3q403p00cr5qawjxl0qg4jixl7j65p"; depends=[ggplot2 glue gtable rlang scales tibble vctrs]; }; ggsignif = derive2 { name="ggsignif"; version="0.6.4"; sha256="02mjailzyqkdnzky60dgampw2sq6mnn7s66fk0lhy32s8apm280i"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; }; ggsoccer = derive2 { name="ggsoccer"; version="0.1.6"; sha256="1b3cx2ym3pknshrxmdgwzyx92c1hl6kyvxm2s8izlaa21z8v6z59"; depends=[ggplot2]; }; ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.4.0"; sha256="0qsih00rm3ng2zh6p2s7a35rh1qlvbkn82s53v765w60fjmhwkwf"; depends=[assertthat data_table dplyr entropy ggplot2 kohonen magrittr tibble tidyr]; }; - ggspatial = derive2 { name="ggspatial"; version="1.1.6"; sha256="0biisbbqgp5hfgkpvc88xf8xclq1hr95sxcv1jf819rm45ggmc9l"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; + ggspatial = derive2 { name="ggspatial"; version="1.1.7"; sha256="15v7g2ywxvy64ixl55j58qfzi41c7ykkh2ind4npf7n76q4ixpc3"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; ggspectra = derive2 { name="ggspectra"; version="0.3.9"; sha256="1x561b8vpiajj5icmcw99vcmkg451y7aimqzdz3vi8qmjmgshvi6"; depends=[ggplot2 ggrepel lubridate photobiology photobiologyWavebands rlang scales tibble tidyr]; }; - ggstance = derive2 { name="ggstance"; version="0.3.5"; sha256="0jz9vvnmcc6a38n8nzr458r65sna23bgn5r8mxdhzdlyqibihr7d"; depends=[ggplot2 plyr rlang withr]; }; - ggstar = derive2 { name="ggstar"; version="1.0.3"; sha256="0d96qsx0id82isaz62plkxwc8a6zcs19s1asyx316ciq9a325pr3"; depends=[ggplot2 gridExtra scales]; }; - ggstats = derive2 { name="ggstats"; version="0.1.0"; sha256="1ivkh5kni11ldwbgn322apcx4xqn6lhmh8g8fwq1cclr3w8pm12d"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr scales tidyr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.9.5"; sha256="0csgbqr8b9ar5x52y79fi91p6hpf4w94rj6pzl41a29d6x91d1fb"; depends=[correlation datawizard dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; + ggstance = derive2 { name="ggstance"; version="0.3.6"; sha256="0wk3gbi5365sndi02gwd4c33vcrj5p8cfwakwjg010y5hgxx96nd"; depends=[cli ggplot2 plyr rlang withr]; }; + ggstar = derive2 { name="ggstar"; version="1.0.4"; sha256="0m2knp1jf1x62nqd8ln4haw90jv69l7vjrhn4pdrywgmwhdrp8gd"; depends=[cli ggplot2 gridExtra scales]; }; + ggstats = derive2 { name="ggstats"; version="0.1.1"; sha256="1rjasjgyg64wcj2w701xkwg31rn2pirh2r5m7kj153k8gx3bx356"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr scales tidyr]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.10.0"; sha256="1baph4gkih2f7wbgrr4xpcghmz9srzk1a5a8bi8r88217mx6ssjr"; depends=[correlation datawizard dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggsurvey = derive2 { name="ggsurvey"; version="1.0.0"; sha256="1a50ac2546pxa35k59j4ih0csiyfjdgqfqwm3fb5ny7jx1mk0hmi"; depends=[dplyr ggplot2 hexbin survey]; }; - ggsurvfit = derive2 { name="ggsurvfit"; version="0.2.0"; sha256="0q7vg9sp1jwc29mdjwpp308h1wpzx6llriziql0w43lzxlrq34nl"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang scales survival tidyr]; }; + ggsurvfit = derive2 { name="ggsurvfit"; version="0.2.1"; sha256="021gb8sdai7bsqjbq94bmzgszk2mibjdkg86rzm4grx8v91cr6lk"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; - ggtern = derive2 { name="ggtern"; version="3.3.5"; sha256="15hhn8msy0l8zbq8ms0zvg1iajn1c28gd77v3hp6dvwwsla8zzbd"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; + ggtern = derive2 { name="ggtern"; version="3.4.1"; sha256="0w0kg6755kfpczqpaly251fgqv31js9gdzr17x734l2adycji3yr"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.2"; sha256="10vrrxviv4yp9lqsanqvwsvbj64vn66hwm1w7860x1g58hf1g0l7"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; ggtikz = derive2 { name="ggtikz"; version="0.1.1"; sha256="1xrmarmils56myi2sgn6gy69dyqfgbp1bj49g3zzpr3pwby3gqvq"; depends=[dplyr ggplot2 stringr tikzDevice]; }; @@ -9989,21 +10044,22 @@ in with self; { ggwordcloud = derive2 { name="ggwordcloud"; version="0.5.0"; sha256="0mr92738s3j9wm6mkr5hd2flqsqw3vfjifv3fajsygysbwrl8dn8"; depends=[colorspace ggplot2 png Rcpp scales]; }; ggx = derive2 { name="ggx"; version="0.1.1"; sha256="13yvckny2b7b7rhgi28xm8379paskin78wm5095s1ily9a2dxgkg"; depends=[ggplot2 sets]; }; gh = derive2 { name="gh"; version="1.3.1"; sha256="1vqjhqlhvvqq8w2cqbgrkqphj0ga5s6fbl4zhcl3vc6fvsms5bpv"; depends=[cli gitcreds httr ini jsonlite]; }; + ghapps = derive2 { name="ghapps"; version="1.0.0"; sha256="12z234lc7iy8svnm37ybj9ym0zd3jq5q9fng9h7dxdw2p9id7y30"; depends=[gh jose openssl]; }; ghclass = derive2 { name="ghclass"; version="0.2.1"; sha256="0jpfc2mjwi6i3bcrfjjl6k4im4m110pq2n00mij2n9czz6v2chla"; depends=[base64enc cli dplyr fs gh glue httr lubridate purrr rlang tibble whisker withr]; }; ghcm = derive2 { name="ghcm"; version="3.0.0"; sha256="0byzi0q3amz7q6if0y54mk3wac0pycci9ypagr65p8rlhx04gqv3"; depends=[CompQuadForm MASS Rcpp refund]; }; ghibli = derive2 { name="ghibli"; version="0.3.3"; sha256="0kl98vxlk86jsqqklzcqr5a65lhqyday3vax374ai6pc24pjymcg"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; - ghyp = derive2 { name="ghyp"; version="1.6.2"; sha256="0ci3xz5v5r9vysfx2y3cgy706wssk9pw505mb57rb4yy0mhry19i"; depends=[MASS numDeriv]; }; + ghyp = derive2 { name="ghyp"; version="1.6.3"; sha256="0jc4rrw0ny0x15im2r9kyrlg9qdnljnbpg5pq4avy997nfdgyhav"; depends=[MASS numDeriv]; }; ghypernet = derive2 { name="ghypernet"; version="1.1.0"; sha256="0k4w37vnhpanpa80la8rscgimnnzzid5v59109xfbbz1xxx1bb49"; depends=[dplyr extraDistr numbers pbmcapply plyr purrr reshape2 rlang rootSolve texreg]; }; gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; - giedata = derive2 { name="giedata"; version="0.1.0"; sha256="0hz8kr1qsbg89icqvpx3d8rhi3vakhsnnq97jmnxj5d6s7c41qiv"; depends=[dplyr httr lubridate magrittr purrr]; }; + giedata = derive2 { name="giedata"; version="0.1.1"; sha256="19sr8phsay7bpqrbh776ms0aw9xgiv0x9knmn88ydzpkcdcd1z9j"; depends=[curl dplyr httr lubridate magrittr purrr]; }; gif = derive2 { name="gif"; version="0.1.0"; sha256="119d7q9xs6xpncv1r2w008kld9z07ckyj1kja9b8n2lnlb8532pk"; depends=[MASS Matrix Rcpp RcppEigen]; }; gifski = derive2 { name="gifski"; version="1.6.6-1"; sha256="1qfhg19iclsdyb583sf25fh7am951c7q53z1s64r3vv1ivdnn18k"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.8.0"; sha256="1gb3x4rln9vayjd9fgzb434mm3dwcqgrvlv6rmh4b39mjfm73sly"; depends=[base64enc R_utils xml2]; }; giftwrap = derive2 { name="giftwrap"; version="0.0.4"; sha256="1zsw529h69x9yaq2csfws4iqn3mm39z34kwzj0b2y850wzbn2dvp"; depends=[namespace processx readr tibble]; }; gigg = derive2 { name="gigg"; version="0.2.1"; sha256="0qb8w455a8wxc5ljmydq4xag2kbj5yk06an0pd9hd4k48wssg8la"; depends=[BH Rcpp RcppArmadillo]; }; gim = derive2 { name="gim"; version="0.33.1"; sha256="1km8pyr1qfzffm33ihhlgvc0qxgxxfi161vkrz77d1b7jkpdyxjj"; depends=[numDeriv]; }; - gimme = derive2 { name="gimme"; version="0.7-8"; sha256="1rapjjivhpj1fv9p9wcdvgzz2vjlsmndi3kkpyhn0sqvycyb2453"; depends=[aTSA data_tree igraph imputeTS lavaan MASS MIIVsem mvtnorm nloptr qgraph]; }; + gimme = derive2 { name="gimme"; version="0.7-9"; sha256="1z6rqgk42p1zzf5vjz6hbzpnpal5mvhfbv30g8n7shnxpim7zakv"; depends=[aTSA data_tree igraph imputeTS lavaan MASS MIIVsem mvtnorm nloptr qgraph]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.2.1"; sha256="1ykc8ji8cyrz5vg9if7lzx5iqm5wvabcyaigfvh014w82i12pfg8"; depends=[curl Kendall ncdf4 raster zyp]; }; giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; @@ -10039,11 +10095,11 @@ in with self; { gld = derive2 { name="gld"; version="2.6.6"; sha256="1i7xpyxd7r1fkjy9zkzd3rfsnb35v5c5fkafs1zd9d8729wfj8za"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.12"; sha256="0aphdscj0s6kqxlkgqkw2d6snrylz6hiis6307pl8ldh7q5cvm33"; depends=[]; }; - glinvci = derive2 { name="glinvci"; version="1.1.18"; sha256="0bsyiy3q86xbjgpka8j4fg55a0wjxm9p0vb2a1b88q8bx8zs7w4b"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; }; + glinvci = derive2 { name="glinvci"; version="1.1.21"; sha256="114fxkn271askxqjnzk0pd3s11n0r9qw1nfxpnqq332hv3skl2h8"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; }; gllm = derive2 { name="gllm"; version="0.38"; sha256="06sq7yk11rbqj8i900ss987fg9b232cirjxhdm1yl9xqz4inxvlg"; depends=[]; }; gllvm = derive2 { name="gllvm"; version="1.3.1"; sha256="1im5q5137jf8cwpydy6p8lip9v43fvgb5hi11ff2wwhc9yw74gyd"; depends=[fishMod MASS Matrix mgcv mvabund RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; - glm_predict = derive2 { name="glm.predict"; version="4.1-0"; sha256="10grj73lwiv1czim787vq5h4cyn3xl028rs3a8l3l4vbg8z7y6py"; depends=[AER dfidx MASS mlogit nnet survey survival]; }; + glm_predict = derive2 { name="glm.predict"; version="4.2-0"; sha256="1696zjn6mqxvvzvbg282p2rxy2r81v46gx1vv0hxkphcrarv4dxs"; depends=[AER dfidx lme4 MASS mlogit nnet survey survival]; }; glm2 = derive2 { name="glm2"; version="1.2.1"; sha256="1byqlvpls23gzy7xlbs1kgfr4bsrmsrpc8rzzacf9czap1nlw39y"; depends=[]; }; glmbb = derive2 { name="glmbb"; version="0.5-1"; sha256="1jy77z5fr781rm5mx6kszwi2zlvnpfwi24fn9vw1kza4jzcw9pjw"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.3-1"; sha256="0x6jk2l5rpjkp5x815gpiwv8maa7mhmy6m8gaxbv1cbn3zyccynn"; depends=[emplik]; }; @@ -10059,10 +10115,10 @@ in with self; { glmmML = derive2 { name="glmmML"; version="1.1.4"; sha256="0xs6vn245y32pshlslblrj6517dwwmk0ffp2rzji8d8h0lsxidxx"; depends=[]; }; glmmPen = derive2 { name="glmmPen"; version="1.5.1.10"; sha256="0qgmyp708qm8pvb62bw8qqk5is1bdbkwmkf0f3cn6z4hkjfgjfns"; depends=[BH bigmemory ggplot2 lme4 MASS Matrix mvtnorm ncvreg Rcpp RcppArmadillo RcppEigen reshape2 rstan rstantools StanHeaders stringr]; }; glmmSeq = derive2 { name="glmmSeq"; version="0.5.5"; sha256="182pgwqqbgpkcvapkps7ahxa4ppic44j10081q0v9lp2cjdiv4qy"; depends=[car ggplot2 ggpubr glmmTMB lme4 lmerTest MASS pbapply pbmcapply plotly qvalue]; }; - glmmTMB = derive2 { name="glmmTMB"; version="1.1.4"; sha256="1ldly6qn8iwqr41ndqlwsdz4v2n36giavsmx33vybn9g7r2fq4m7"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; + glmmTMB = derive2 { name="glmmTMB"; version="1.1.5"; sha256="1yh8q0l3l8hm408k8khjj1hff3nkqx0wq6a41fddwfmrq1alfjrk"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.4"; sha256="0gnb2s34xz7cjyaa2w2wq7n6c5016a14mc03kalvwdv3f7b98zan"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders tibble]; }; - glmmrBase = derive2 { name="glmmrBase"; version="0.1.2"; sha256="04xhp70wnxhfkbj7zqkyvggll22gwdm1fhhg6dg0kn7xmklkbjp3"; depends=[Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; - glmnet = derive2 { name="glmnet"; version="4.1-4"; sha256="1y80a3b5s24ywhlil3r7b3a0vs9j59d7jkxrqa8zz09x1c5ggc7n"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; + glmmrBase = derive2 { name="glmmrBase"; version="0.2.3"; sha256="0anf428nv1h3xabn0268kr6miwiwcsrmscdhnjbfkp6ckd5247hc"; depends=[digest Matrix R6 Rcpp RcppEigen]; }; + glmnet = derive2 { name="glmnet"; version="4.1-6"; sha256="0c3y9g3k0f0yclcffxzgfhfylb3py0iydhyspcjdrl44lb7cdi5y"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.8"; sha256="1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; @@ -10077,24 +10133,24 @@ in with self; { glmvsd = derive2 { name="glmvsd"; version="1.5"; sha256="0im3143xvlsgkknsjnifx9zh7jsdm9bsmgiwrk0r2iil2ns22wgy"; depends=[brglm glmnet MASS ncvreg]; }; glmx = derive2 { name="glmx"; version="0.1-3"; sha256="0wfwzc6r5xcaaz6knj2chzwjvryfigpazrbd0kn82k0mprsm1vqz"; depends=[Formula lmtest MASS sandwich]; }; glmxdiag = derive2 { name="glmxdiag"; version="1.0.0"; sha256="0m077j7prjc38yshq8ahprfsai0rc20qma2njjbdi975mrwxi25c"; depends=[VGAM]; }; - globalKinhom = derive2 { name="globalKinhom"; version="0.1.4"; sha256="0ah05yl0fxiih3lfh8gxls01ikanwg3z8npbgv625zjfrqp1qwsw"; depends=[spatstat_core spatstat_geom spatstat_random]; }; + globalKinhom = derive2 { name="globalKinhom"; version="0.1.5"; sha256="1a1y6nhwgwf14ajagz7qllncw3hvhs2fs0nmf46wypvxplnicjaf"; depends=[spatstat_explore spatstat_geom spatstat_random]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; - globals = derive2 { name="globals"; version="0.16.1"; sha256="158y39qv99f1kc2i7w8d4lm2ls96plb43fzamz31im9xb9bkmxpp"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.16.2"; sha256="02kpdlrx1bannaixz03c0f7bii9g36iy2nw779mfgi56byljcb38"; depends=[codetools]; }; globaltrends = derive2 { name="globaltrends"; version="0.0.12"; sha256="1a9zl12zcy4qzs89vda8zhgqx97fkj0xi9xacbavr0is7k8s7hjp"; depends=[DBI dbplyr dplyr forcats forecast ggplot2 glue gtrendsR ineq lubridate maps purrr rlang RSQLite stringr tibble tidyr WDI zoo]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-2"; sha256="15zk11p10v8fmqvmg9gdhxa0h6s5axvmdkxkpwrg8sgp2ln94fr9"; depends=[sandwich zoo]; }; glossr = derive2 { name="glossr"; version="0.6.1"; sha256="0lwwsnpcgnbagzqxnlp69z8cg0p40lvrjy31kyg80lrh14p94sxa"; depends=[cli dplyr flextable knitr magrittr purrr rlang stringr tibble tidyr]; }; glottospace = derive2 { name="glottospace"; version="0.0.112"; sha256="1bgyxki16mh38pw1476hq9f9r2899vs6ax7dsyrn1xzcad6x91y3"; depends=[dplyr ggplot2 magrittr purrr readxl rlang rnaturalearth rnaturalearthdata sf tibble tidyr tmap units writexl]; }; glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; - glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; + glpkAPI = derive2 { name="glpkAPI"; version="1.3.4"; sha256="1cr40jksm27h0j1j0q1ngcf4cbrhrjz48m6z3c3jns8h17h8g8qh"; depends=[]; }; glue = derive2 { name="glue"; version="1.6.2"; sha256="1gzxk5jgdh2xq9r7z09xs306ygzf27vhg3pyfl7ck1755gqii9cx"; depends=[]; }; - gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; + gluedown = derive2 { name="gluedown"; version="1.0.6"; sha256="1rvkgfsjlp9zrpgb0kvr2n6wfja5j1yz62sc9kmbizbph6yvrins"; depends=[glue magrittr]; }; gluvarpro = derive2 { name="gluvarpro"; version="7.0"; sha256="04npfllnl0x7w8z693p4zixgkrcvvvjbp9047b231pbldfirx0hy"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; glvmfit = derive2 { name="glvmfit"; version="0.1.0"; sha256="1nb34dm4m0nq7cr9f9jsacnk0xjv451m419sdwbk11ykpqkh9cdk"; depends=[]; }; glycanr = derive2 { name="glycanr"; version="0.4.0"; sha256="1ic2v2dim0a8kzl38vx8an80jrbzimng0plrx62a1ps1jnczihl9"; depends=[coin dplyr ggplot2 tidyr]; }; gm = derive2 { name="gm"; version="1.0.2"; sha256="1g0frcfk2ybhhz0sixdmj8h3z61acaxs10ybja60q91mxlyix2zx"; depends=[base64enc glue htmltools knitr magick magrittr MASS rlang rstudioapi stringr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; - gmGeostats = derive2 { name="gmGeostats"; version="0.11.1"; sha256="0dbvvd9ab6ik5a9fhzk6md4y5lbjib4axhml0i09w1kd3p4y55jy"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; + gmGeostats = derive2 { name="gmGeostats"; version="0.11.2"; sha256="182sqhlnvax09jbz53bfgp9wr9f309y84zk6dfgkj8la5yz273ni"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="1.0.1"; sha256="1cfirp7a5jg9mprzj55ppyag4l527l8czrq4a1cxc8qrm8kpzx0b"; depends=[base64enc crayon gargle httr jsonlite lifecycle magrittr mime rematch2]; }; gmapsdistance = derive2 { name="gmapsdistance"; version="4.0.0"; sha256="1qi9xsm0izkgj1lfg353lsg4hl0gz0jadkygrbyimpiqcfl9w6jg"; depends=[RCurl XML]; }; @@ -10105,11 +10161,12 @@ in with self; { gmm = derive2 { name="gmm"; version="1.7"; sha256="12lg2j67z7s75fk9l8npiv8g8mz4rhvhrq7lc2d49jj4wsipah0r"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1.1"; sha256="158y7yh4maawn9vki8cq4sil48xib2bbpl6qgj5gvlkw3c14hzfs"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.6-7"; sha256="119z6q3xca1ysdpjfmq3crplj355vlwggxvqh2gs4yi63xlzwcv3"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.6-8"; sha256="0fba80f28fcb2w2spiy6wg7dr5cz7w6gf9z3yrkc6p60zbxdaccf"; depends=[]; }; gmpoly = derive2 { name="gmpoly"; version="1.1.0"; sha256="0rlmwlxyg9b8gqyrc7mbqv7x86v9pqj51pd847raq7x1smjnz1kg"; depends=[english gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.3"; sha256="1clnhwxn1z1iyzx9ps9rkfv2xqdyqc73mcc77ysmlg5cncvm1hac"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="2.0.5"; sha256="10wb9gk5l8jhq55rxcyqbq6jmcd6xzfabg9x5hfmss34d0gdv7vb"; depends=[Brobdingnag gsl mvnfast pbapply]; }; + gmvjoint = derive2 { name="gmvjoint"; version="0.1.0"; sha256="1c2w4c4hvk554m8vsi5fz8j5fyn2rav1r1wqbzvpmqqxbqmzbm4y"; depends=[glmmTMB MASS Matrix mvtnorm pracma Rcpp RcppArmadillo statmod survival]; }; gmwmx = derive2 { name="gmwmx"; version="1.0.2"; sha256="1h6p581cgz739hvdlr0kn3h981mhlklngfvzbkm7f9g5abaqa2nb"; depends=[fs longmemo ltsa Matrix Rcpp RcppArmadillo rjson stringi wv]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; @@ -10120,6 +10177,7 @@ in with self; { gnrprod = derive2 { name="gnrprod"; version="1.0.0"; sha256="0ndrw2ym0f9m593q51lf069nf6fasrwb3psv1qr914jpm6vcp9di"; depends=[data_table]; }; gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; go2bigq = derive2 { name="go2bigq"; version="1.0"; sha256="007sk6i10phxfmrgn03pa43ixfp1v27nxyvgmhzwrj5l9b532f0d"; depends=[gmp Rmpfr]; }; + goalp = derive2 { name="goalp"; version="0.3.1"; sha256="1xr9bgizzsjr4nn41q1zi049wg9cw6qril60bri96x0xgc00qdpz"; depends=[lpSolve]; }; goeveg = derive2 { name="goeveg"; version="0.5.1"; sha256="1dg0aw3sfar706jyiy5m5qz3nzs6sy3ljs9jp0p65b0v01rw8sbs"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; @@ -10134,7 +10192,6 @@ in with self; { goldilocks = derive2 { name="goldilocks"; version="0.3.0"; sha256="1h16kfalyklc7i3rix1ml83wjcbi9wv3z3rwxa83gp2h6nfpzpwl"; depends=[dplyr fastlogranktest pbmcapply PWEALL rlang survival]; }; golem = derive2 { name="golem"; version="0.3.5"; sha256="0rjkl1r83h0hcn30zssx64qm07sdx3g4v5rdxn56gbzfghw7ddcl"; depends=[attempt cli config crayon desc fs here htmltools pkgload roxygen2 rstudioapi shiny usethis yaml]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; - gompertztrunc = derive2 { name="gompertztrunc"; version="0.1.0"; sha256="1qcx4s4lz2gsjr0nmwaih7pdh2anibrri7zfpsrl65lndkwy6hg4"; depends=[broom cowplot data_table dplyr flexsurv ggplot2 ggsci magrittr modelr rlang stringr tibble tidyr]; }; gontr = derive2 { name="gontr"; version="1.1.0"; sha256="0asvpc3nizcn7cqdxr1j9hvhprmrazd8c7a2svhmln4vg9x1zzkp"; depends=[]; }; good = derive2 { name="good"; version="1.0.1"; sha256="0lgp8kpdiaprq78fzny5c344m2s1vb24y9x9m8rkg1kd769h56pv"; depends=[copula maxLik plyr]; }; goodpractice = derive2 { name="goodpractice"; version="1.0.4"; sha256="039ivcb54v58fic8sy445s053yii34nzb170yn3fz6662ik8m8ax"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; @@ -10152,12 +10209,13 @@ in with self; { googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.3"; sha256="114yhhqjpg7khgq82y1qdpnm6pbqinlgwh5n1lx6fzsm1ajhl0kv"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.2.0"; sha256="0ia3ndz5vf3bc5kckyxwn71nngml6p67v8r3n6h79s12xn9jzylg"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; googleVis = derive2 { name="googleVis"; version="0.7.0"; sha256="1s82xcs6zrlmnhay764bspzwvabfyi35nq6fwdrrk3v79q13c5jz"; depends=[jsonlite]; }; - googleadsR = derive2 { name="googleadsR"; version="0.1.2"; sha256="1f934i4b5sfpwfhg8w2jbmlqid4h5kyzrlicsw1la7ap0b22fn0z"; depends=[jsonlite]; }; + googleadsR = derive2 { name="googleadsR"; version="1.0.0"; sha256="02zr7y485bpp11z9njcb3c07aw454pvf8zsdqb4qswps6l1ni0gc"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.0.0"; sha256="09jsiknzyfgxd0nzdr3wrrjw24allch2x74h96qg8vh8dad4cp30"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googler = derive2 { name="googler"; version="0.0.1"; sha256="1aayji3ncqxl58k29d93dbx05s9rp9bc63fl2cpl1cys7gilblxx"; depends=[jsonlite tibble]; }; googlesheets4 = derive2 { name="googlesheets4"; version="1.0.1"; sha256="14b5lzn6vjn72mw7vf3lzm2ppbjf0wr0n6sw0v5r6h4lk37cnki8"; depends=[cellranger cli curl gargle glue googledrive httr ids magrittr purrr rematch2 rlang tibble vctrs]; }; + googletraffic = derive2 { name="googletraffic"; version="0.1.0"; sha256="14wpra27z4jqgyc9mzfjh4k0f6z3cdp01fbv833ld11l5ays0qnb"; depends=[dplyr googleway htmlwidgets plotwidgets png raster sf sp stringr webshot]; }; googleway = derive2 { name="googleway"; version="2.7.6"; sha256="07jyawybdrfb7rzxba6mqlz98slv6j1bdqv5lqc06zf5x84r0wwd"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; goric = derive2 { name="goric"; version="1.1-2"; sha256="004nx29wz191rp0naa73r762bf6lap931lwrxifhz7izl47jzfj0"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.2"; sha256="0id0xqdw4rwqviym8l0a5gnl5a68ci5f4gn4bhywmzb6fh1nxj33"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; }; @@ -10170,7 +10228,7 @@ in with self; { goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; - gpboost = derive2 { name="gpboost"; version="0.7.9"; sha256="1xvm0z132dn5in3j06qz4bsixa8dw215amrvlbb4g7dkg2934am4"; depends=[data_table Matrix R6 RJSONIO]; }; + gpboost = derive2 { name="gpboost"; version="0.8.0"; sha256="066qd921pxcb2frlnia7zdldg49rgd5qrpk2gzkbxcklmjf8j923"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.8"; sha256="1yysjv335mq6lpdc01yiv56zhs0085bdlanh74k3ahjbszh9cy27"; depends=[askpass curl]; }; gpindex = derive2 { name="gpindex"; version="0.4.3"; sha256="1msbp424100agcmrwiirb2i1p5q6n0nfjwysyzh08p8c6c85i4vv"; depends=[]; }; @@ -10178,13 +10236,13 @@ in with self; { gplite = derive2 { name="gplite"; version="0.13.0"; sha256="0nxms34dfmbi3rz6x0yz8pn9a1v6w4k2w6jz1qrbqclmlg66g8vs"; depends=[Matrix Rcpp RcppArmadillo]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; gplots = derive2 { name="gplots"; version="3.1.3"; sha256="05k7a8x62qs5g6mps62vb3mwjdnfjzvjb20yws3x0r2j42g3p1cz"; depends=[caTools gtools KernSmooth]; }; - gplsim = derive2 { name="gplsim"; version="0.9.2"; sha256="1gkirnjjlja4z2ynrjc83wqf4q7zib44jgfsljpxmlala797qp7f"; depends=[mgcv minpack_lm]; }; + gplsim = derive2 { name="gplsim"; version="0.9.3"; sha256="16xanzrapz0gnbd4zm6jm305w00c3qspcvjq7vw2r4zry0sr96pa"; depends=[mgcv minpack_lm]; }; gpmap = derive2 { name="gpmap"; version="0.1.2"; sha256="1n1r4rda9v4zw8zz4vcagmkkpgirwydhqz36pyq0assxwclnkcz0"; depends=[foreach ggplot2 isotone plyr]; }; gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; - gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; + gquad = derive2 { name="gquad"; version="2.1-2"; sha256="09hcs2lgqnim29gpd805b5ndxi22z2xwsf25rb1zckxf9c7bn7sj"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-5"; sha256="0pbzc45wgp0cpycnw0bzn65ckdszzay0zrp7c7ssxdkifp8bai3a"; depends=[XML]; }; grImport2 = derive2 { name="grImport2"; version="0.2-0"; sha256="19q0dd8fpp1g4xf6sg5f8dxybwxjfw553ra6wgjd8b74fzca40m1"; depends=[base64enc jpeg png XML]; }; grPipe = derive2 { name="grPipe"; version="0.1.0"; sha256="0m9zxnmg8gfzridzk4lhhp1gw3nrygarn90ppwyi67bqdpp5hkfh"; depends=[DiagrammeR DiagrammeRsvg dplyr magrittr png rsvg]; }; @@ -10209,15 +10267,15 @@ in with self; { grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; graphhopper = derive2 { name="graphhopper"; version="0.1.2"; sha256="1zrnwh86jv37z07b6l1i94dgjn8k3b3a3f76gfjsyyxvlc64i76x"; depends=[dplyr googlePolylines httr jsonlite magrittr tibble]; }; - graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.1.0"; sha256="1cc4xcb72yci2gq2zn3g1nh3ba802anpymm0hajdbz3kb0wz1gyn"; depends=[igraph matrixcalc mvtnorm Rdpack]; }; + graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.2.0"; sha256="00nfm6dkmx9cv9j6462vvkd72x72r4yyibg5hh9jifnss9p7smjh"; depends=[corpcor edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.3"; sha256="1mvv03zkqp5f7q2nnvpj2gq1v67vp42qr7cm0a20cfvp2gsxq0h5"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; graphkernels = derive2 { name="graphkernels"; version="1.6.1"; sha256="1fwl5a13mdmia374zas0vvd4dlfnp4in9gj42c0iq01icy1wq0la"; depends=[igraph Rcpp RcppEigen]; }; - graphlayouts = derive2 { name="graphlayouts"; version="0.8.3"; sha256="08a4cpy0n90hw8xzmxck13hp76yh40r0njb2m7mwdldljkbybr7r"; depends=[igraph Rcpp RcppArmadillo]; }; + graphlayouts = derive2 { name="graphlayouts"; version="0.8.4"; sha256="1zch8v0fc9lrm1pklcvi7g4g7zmqq3gxprm7pbdx018b35z8z3bp"; depends=[igraph Rcpp RcppArmadillo]; }; graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5.1"; sha256="10zpibqh1vsin60pl5dnk4z2kzrfc3aqrhijcn36zq7f97629wv8"; depends=[jsonlite Rcpp]; }; graphsim = derive2 { name="graphsim"; version="1.0.3"; sha256="16djk5zm2pnvfyb2783rdyi6a0gspm23br7xxgb2c8wfd9gf430n"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; }; - grates = derive2 { name="grates"; version="0.3.0"; sha256="0ycgh6fzrsjv3n0wzcaybk686lq074krayz5jfx690iqj5fjkjqi"; depends=[clock ellipsis rlang vctrs]; }; + grates = derive2 { name="grates"; version="0.3.1"; sha256="1a7f0ij415spfg20h5qqvmk46zh768l34jk61a45y1ywzs1cb3ki"; depends=[clock ellipsis rlang vctrs]; }; gratia = derive2 { name="gratia"; version="0.7.3"; sha256="1m1jc4qjcxkr6w75hirqwkn2sdrly7ydc3kcd33m4jhjzp7nysb2"; depends=[dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork purrr rlang stringr tibble tidyr tidyselect vctrs]; }; graticule = derive2 { name="graticule"; version="0.1.6"; sha256="0y8cyhlfm8amdb23cvxy508mpd4d64xgnk1xlr37ss2pqrxdhpir"; depends=[geosphere quadmesh raster sp]; }; gratis = derive2 { name="gratis"; version="1.0.0"; sha256="0dkgbha7ijwvddqxcnfn9gfz29kjzykifbr252qp3qjzkdqw50hi"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; @@ -10251,7 +10309,7 @@ in with self; { gridGraphviz = derive2 { name="gridGraphviz"; version="0.3-1"; sha256="0yzy7w4bk3rn9yjqy06gzkcs0dla3n49z3v1z0mjikg8cd97d5ni"; depends=[graph Rgraphviz]; }; gridOT = derive2 { name="gridOT"; version="1.0.1"; sha256="106h1lk2fyfl68iwmbqbm9h8ip75ibanr1dsi6nrmd54pz475ry8"; depends=[Rcpp RcppArmadillo]; }; gridSVG = derive2 { name="gridSVG"; version="1.7-4"; sha256="1jspjn56yrkx98hhs98npzm0k0kwpv8x1hg40kphx5ikhvincxmr"; depends=[jsonlite XML]; }; - gridpattern = derive2 { name="gridpattern"; version="1.0.1"; sha256="0ia0n5k72a3a2c2hhgg0ykmbbq42yr1jf81xvmqq28jd4nzvzqn1"; depends=[glue memoise png rlang sf]; }; + gridpattern = derive2 { name="gridpattern"; version="1.0.2"; sha256="13yypjsbpr61yn15y4cyz6s8jvcgg3mmr8rncskinpk8lsa8h2h4"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridstackeR = derive2 { name="gridstackeR"; version="0.1.0"; sha256="01yazynwprzjygkh0dwrlvbjsmxvfy1pxr0nldnbngmq10wvpp2n"; depends=[checkmate htmltools shiny shinyjs]; }; gridtext = derive2 { name="gridtext"; version="0.1.5"; sha256="0f7i2qb8fawi8agy2iz2c173kfwj7cbb5ikjix64nmzqc5j7363d"; depends=[curl jpeg markdown png Rcpp rlang stringr xml2]; }; @@ -10267,7 +10325,7 @@ in with self; { groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; groupTesting = derive2 { name="groupTesting"; version="1.0.0"; sha256="00jy1gw6whslmfcqic99hmbxh2z75rj14cjzrm5mnpcajn37s66j"; depends=[pracma]; }; groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; - groupdata2 = derive2 { name="groupdata2"; version="2.0.1"; sha256="1gppn1d456chmcqn2zxssijvkl8ww23pbnxikd4jmsl1735wiw9h"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; + groupdata2 = derive2 { name="groupdata2"; version="2.0.2"; sha256="1icqy5g0xww7f4aimawbbanqma6vbyln3xivhz0i8x3pdnkf1gl5"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.4.3"; sha256="1j6n09cr3wk7l77pgnabqhxm6cfjvvxndd5bgybr4jljfv7rh92y"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; groupr = derive2 { name="groupr"; version="0.1.0"; sha256="1gych92dpyxg2vfm3h6djw61d9z2n6q2kvbz1xpq1p0zcyiw16gy"; depends=[dplyr purrr rlang tibble tidyr vctrs]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; @@ -10275,8 +10333,8 @@ in with self; { grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growfunctions = derive2 { name="growfunctions"; version="0.15"; sha256="0rj0kypjvqj7wlswzq4kxqizhlw56zgaydf37cbfjm5090h43fzi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; - growthPheno = derive2 { name="growthPheno"; version="1.0-34"; sha256="073pbi3xyqr828gilrv3w42xv28flf8dld4j60xqqjr7g4dcllpk"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape stringi]; }; - growthcleanr = derive2 { name="growthcleanr"; version="2.0.2"; sha256="07icwy0zdba1l0gac0zmd97xsk3lilfa2r565pf74fi29mp85y9z"; depends=[data_table doParallel dplyr foreach labelled magrittr plyr R_utils tidyr]; }; + growthPheno = derive2 { name="growthPheno"; version="2.1.16"; sha256="095lwl8dj6xqwqar28q40iwq325kiylfidgmrx2rdfz2cgmvlybs"; depends=[dae GGally ggplot2 Hmisc JOPS RColorBrewer readxl reshape stringi]; }; + growthcleanr = derive2 { name="growthcleanr"; version="2.0.3"; sha256="1qdm91mpa36vpxz43fx2dv7qwg9wd6zasc7plalqyf60p3iw8r7d"; depends=[data_table doParallel dplyr foreach labelled magrittr plyr R_utils tidyr]; }; growthcurver = derive2 { name="growthcurver"; version="0.3.1"; sha256="1l3dqcl395nh406s7d5554r5ynk1a7v5ba5kmnv9r7lj7h9nfdjj"; depends=[minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; @@ -10315,25 +10373,27 @@ in with self; { gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.1-1"; sha256="10nxyi1kqq9ypincpr347iqixfz17nd69g7ikhyid1djqfy1v8nj"; depends=[]; }; gsynth = derive2 { name="gsynth"; version="1.2.1"; sha256="1a4s8ghxc5zw295ys8hp22nx93gc1vyakn7r1dcq3ghikh02nzaa"; depends=[abind doParallel doRNG foreach future GGally ggplot2 lfe MASS mvtnorm Rcpp RcppArmadillo]; }; - gt = derive2 { name="gt"; version="0.7.0"; sha256="00v9xmxyjfdcvswr8479a8is7rlkyhpkdnk7syp80h7qwfjv2mfq"; depends=[base64enc bitops cli commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; + gt = derive2 { name="gt"; version="0.8.0"; sha256="1yg91nnx1d6d6mmjhbqbcy7ya69sd7sbhlj2fsw79k01849lxdsy"; depends=[base64enc bigD bitops cli commonmark dplyr fs ggplot2 glue htmltools juicyjuice magrittr rlang sass scales tibble tidyselect]; }; gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; - gtExtras = derive2 { name="gtExtras"; version="0.4.2"; sha256="0vy93jjibkgak2ml9a1a98rxrk0d15xqvavh7d1ysk3vc6b7h61f"; depends=[commonmark dplyr fontawesome ggplot2 glue gt htmltools paletteer rlang scales]; }; + gtExtras = derive2 { name="gtExtras"; version="0.4.5"; sha256="04vl7i9qllfn5977y47kc4355rpk9m63rii2c0v27i9lbvr3z4fr"; depends=[commonmark dplyr fontawesome ggplot2 glue gt htmltools paletteer rlang scales]; }; gtWAS = derive2 { name="gtWAS"; version="1.1.0"; sha256="1kbkz0iwc3gfj982m93m2wdr1xm5rhy70k6bdc7kms9ivh5fh6sh"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.3.1"; sha256="1dbwxhxawwbmaixwxxglazv5bici56qvmjk7sqa8j66m49bjrmlb"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-3"; sha256="0fnrpgfji5f1n8nra0d8xghqgsjil7r2j6xnbmfm7mjafcav4wwk"; depends=[survival]; }; + gtfs2emis = derive2 { name="gtfs2emis"; version="0.1.0"; sha256="1nh3m57xhh12sm18d5lvf0i9z4ayn6kgbmp036lw89wz10s42w6z"; depends=[checkmate data_table furrr future gtfs2gps sf sfheaders terra units]; }; gtfs2gps = derive2 { name="gtfs2gps"; version="2.1-0"; sha256="1z9nlc5lcn9vhqc1y25m5cqvgb8rnnrwnqsxrnmq7cr9shs6dkm5"; depends=[checkmate data_table furrr future gtfstools lwgeom progressr Rcpp sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; - gtfstools = derive2 { name="gtfstools"; version="1.1.0"; sha256="1ms4xjbnaggakccwmd8bhi061rlbznx3bczaa35df19saw5z66cz"; depends=[checkmate cpp11 data_table gtfsio sf sfheaders units]; }; + gtfstools = derive2 { name="gtfstools"; version="1.2.0"; sha256="03gc784dvskvg8m0fcqc966ka0slnh10in5gk7bba8h7lnfb893w"; depends=[checkmate cpp11 curl data_table gtfsio processx sf sfheaders units zip]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; - gtools = derive2 { name="gtools"; version="3.9.3"; sha256="0criwc0jmbrgaslh2kdjirgdzbf0ycry8yjryi95fb9qgckm7yvs"; depends=[]; }; + gtools = derive2 { name="gtools"; version="3.9.4"; sha256="04gihp78x2caahqvf0mlv1cqy1m121l6hkdvbp01r2z99wcqpksr"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtreg = derive2 { name="gtreg"; version="0.2.0"; sha256="0ivg1chwn4igy9df5c8dmq5r2ryjwasqvdi8q4xfysjxij97hd6s"; depends=[broom_helpers cli dplyr forcats glue gtsummary purrr rlang stringr tibble tidyr]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.5.1"; sha256="05bfcc77bg2ndl83l0lv7rs4slxcflv9h2pfij8a3j1k9r9lwp2x"; depends=[anytime curl ggplot2 jsonlite]; }; - gtsummary = derive2 { name="gtsummary"; version="1.6.2"; sha256="0naa0jzv6cgnrglcis4h3i0y11sgh8fj0mm9wg8rzdg9hir861hq"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; + gtsummary = derive2 { name="gtsummary"; version="1.6.3"; sha256="0hwl4vzny8xzi8bzlmaj9i4rlxxs851m8jsx1p96j9j7ncdsmpsc"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; + guiplot = derive2 { name="guiplot"; version="0.3.1"; sha256="0h8jjilkxcqgmyr7pcri8kilww44yrdvk9qfbvyr6gk7smvb9y0c"; depends=[DT excelR ggplot2 magrittr R6 rlang shiny svglite]; }; guix_install = derive2 { name="guix.install"; version="1.0.0"; sha256="0s3wb5781yc43c9zwrn7i87zcbrlx7xr0ms0v9hvgs7qsv02id9j"; depends=[RUnit]; }; gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gumboot = derive2 { name="gumboot"; version="1.0.0"; sha256="0c31rxkq08wzycwiwii7q166pzwfbdg35259rymwy0g38pnjnjp6"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 reshape2 stringr]; }; @@ -10367,7 +10427,7 @@ in with self; { hSDM = derive2 { name="hSDM"; version="1.4.1"; sha256="1jwqjzr0zpckzh2jpqh17v6ypq4mzn5khlv6p37y59zz8bh9mvxp"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5.3"; sha256="1qrp4hwxrj7nf7lrxvhwgi9vky0wbyfd165b8idavj0b2n29s98n"; depends=[wavethresh]; }; habCluster = derive2 { name="habCluster"; version="1.0.5"; sha256="1cjmhq8krkv4g1vy70kc3j667djzmq38xlqn568f437f6jaglvkp"; depends=[igraph raster Rcpp sf stars]; }; - hablar = derive2 { name="hablar"; version="0.3.0"; sha256="12gm5n3p2kmjwhkf60n4bjn3lrj7lrs5sgmvads9sfp2ckhaiysk"; depends=[dplyr lubridate purrr]; }; + hablar = derive2 { name="hablar"; version="0.3.1"; sha256="02d5rssggf8n67psjn8sw106y4vzndyp7sq43hfm4zqnpsxp0hgq"; depends=[dplyr lubridate purrr]; }; hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; @@ -10385,17 +10445,17 @@ in with self; { hansard = derive2 { name="hansard"; version="0.8.0"; sha256="00mcy58nhlphb0v0wchbaw1qamm0435s09nxxw6rr5z872rhyf5a"; depends=[dplyr jsonlite lubridate snakecase tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-9"; sha256="09ijc4sbw743z74fzklmvig11ndkycg6j86k4214wfsj1yj6j9x6"; depends=[]; }; haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.2"; sha256="103i1fxk990drlsdhjrh9p6rp05g7gqzmlqfcdx9a1di1qrhw5qh"; depends=[haplo_stats survival]; }; - haplo_stats = derive2 { name="haplo.stats"; version="1.8.9"; sha256="0np9kw4f30xbvwr4f79g909ilis5n273ridmlwyzjxiskiry6mx0"; depends=[arsenal rms]; }; + haplo_stats = derive2 { name="haplo.stats"; version="1.9.2"; sha256="1397rxcqqz29yaf3f2gphg1jhmfw3wvvjvqk7cz01jdh3pihdh56"; depends=[arsenal rms]; }; haploR = derive2 { name="haploR"; version="4.0.6"; sha256="1cg92v64xdzmr5hbjhd11rz6rkdddsxcxkqdgbj5hd1ldqsrjj45"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.2"; sha256="07grdwli0kxnnnf7mg8z7gjpny88h71vf867g50f08yybgb46y70"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.1.6"; sha256="0vbyw8017jbad1f1zd6ccaf68p1863r7qrli8nj47si7ivs0qv3s"; depends=[archive checkmate curl dplyr httr2 magrittr sf terra xml2]; }; + happign = derive2 { name="happign"; version="0.1.7"; sha256="1zxm9hg9jq0xzw6has9blskvy0cz6c8b3qqysaca1569zmyfgw8n"; depends=[archive checkmate dplyr geojsonsf httr2 magrittr sf terra xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; hardhat = derive2 { name="hardhat"; version="1.2.0"; sha256="0y5dxpd4gsrs365x1v4qf2vq7hq2qb6f6x50dyj29xmmn760wcpr"; depends=[glue rlang tibble vctrs]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="3.0"; sha256="17irfw8788yhh36698p9w8wab6wcin1yzfinlbs3gdg70d42zcnd"; depends=[FMStable]; }; - harmonizer = derive2 { name="harmonizer"; version="0.3.0"; sha256="116vby0n3vj2gc46s629ppq3kxsjvgdfmc6fdjz0rxyjcgjdqwxz"; depends=[]; }; - harmony = derive2 { name="harmony"; version="0.1.0"; sha256="0jkj9y4j6ja2d6y5j0akmkkgpppprk65i6bwwhs163g918i8qng0"; depends=[cowplot dplyr ggplot2 irlba Matrix Rcpp RcppArmadillo RcppProgress rlang tibble tidyr]; }; + harmonizer = derive2 { name="harmonizer"; version="0.3.1"; sha256="1zckf30bpjxnpb5ymz1razdbzjpvq8gf3a3si5grm0c5m4gmypj7"; depends=[]; }; + harmony = derive2 { name="harmony"; version="0.1.1"; sha256="0pcvfy2gpkgwws09cnd6qkr62w53rdhiiz98jr9w19m15gc8skvm"; depends=[cowplot dplyr ggplot2 irlba Matrix Rcpp RcppArmadillo RcppProgress rlang tibble tidyr]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; harrypotter = derive2 { name="harrypotter"; version="2.1.1"; sha256="1j3sv0rpp4lcrf09j4a3an4lkwi2x1z18iv62fk6c2kpp9b14b8r"; depends=[ggplot2 gridExtra]; }; hash = derive2 { name="hash"; version="2.2.6.2"; sha256="17scs675a86c34hjbxmwi8kny4yyv97x3515s449zafj2i0ad8vm"; depends=[]; }; @@ -10412,8 +10472,9 @@ in with self; { hbsae = derive2 { name="hbsae"; version="1.2"; sha256="0fg782gxivkkwhqvxf09j1q20f2dqm7bd1y9bp99fy7mg88zp0gn"; depends=[Matrix]; }; hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; - hce = derive2 { name="hce"; version="0.0.2"; sha256="1h8ixf93x97gcfzlf2mk796lqq92vmk2g74s8811087rlkcdk8ik"; depends=[]; }; + hce = derive2 { name="hce"; version="0.0.8"; sha256="10wxr6v4mwr6map3rl3ds3bfpqw2jq3vlqyhic1jiwjx7dl41913"; depends=[]; }; hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; + hcidata = derive2 { name="hcidata"; version="0.1.0"; sha256="16qzll0rhfc6szi9y5hxycq5462jm78kla70fnv1sqw7n34pvpg5"; depends=[Rdpack]; }; hctrial = derive2 { name="hctrial"; version="0.1.0"; sha256="19li8i8hx0r3b63q80cnj6pr72rdbmykxq0kcfbn4azq3sdd046y"; depends=[clinfun GenBinomApps]; }; hdImpute = derive2 { name="hdImpute"; version="0.1.1"; sha256="16p5mkapgsnb8mr74388hzrvbmn2njql3v3lk9902mdp565pk9ya"; depends=[cli dplyr magrittr missRanger plyr purrr tibble tidyselect]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; @@ -10434,12 +10495,11 @@ in with self; { hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; hdtg = derive2 { name="hdtg"; version="0.2.0"; sha256="11shszhgpm8aka2awxyrnxpq8f8sdgw9b97mvdz5yb9xbm9kl57z"; depends=[mgcv Rcpp RcppEigen RcppParallel RcppXsimd Rdpack]; }; headliner = derive2 { name="headliner"; version="0.0.2"; sha256="0ylvibi8nlsz5is5rv4m25a7jajidy59k2d19dqw059qh49jd64f"; depends=[dplyr glue lubridate purrr rlang tibble tidyr]; }; - healthcareai = derive2 { name="healthcareai"; version="2.5.1"; sha256="0ah855wvb2v8b8zz5a64q8psjrkpgq9xzyrla3mdpm5xx2gh0z0p"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; healthyR = derive2 { name="healthyR"; version="0.2.0"; sha256="0fyaamw06kv2gsz2r9fiys2wf48h0k2x1z133682p3hs37g36kr0"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; - healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.9"; sha256="053bvzw41qlqrii133cnjfx430vjd46b0gzpfa4359vzpwl71win"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; + healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.10"; sha256="0yzi2gnzhsp1rxcq5c38d4ih14ix5mbcmz7yyrxmcq61zqpgfhgx"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.3"; sha256="0kiq0jkp99pi8l367v6iy255g44yw3cm6b8laayzvanfaq7zdn89"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.5"; sha256="1v35l9q6a3naszs9mi3ahjkv8yknli5h6h22dzbshr9r9f6d7gjh"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.2"; sha256="1ngxadwpd62lx6y41szqckv1f2j8ja1hy4qx08vccpjbmlcg8v1b"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -10456,16 +10516,17 @@ in with self; { helixvis = derive2 { name="helixvis"; version="1.0.1"; sha256="113rnpnrcnw18ks78fgq79zdrw3kmpzpimlc45gvj0za2fbyci3p"; depends=[ggforce ggplot2 rlang]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; - helminthR = derive2 { name="helminthR"; version="1.0.9"; sha256="1s5vxpii1zryflafqxn0fwx3xnkbi2115f36fd7jq9l9y7grpqz9"; depends=[httr magrittr plyr rvest taxize xml2]; }; - helsinki = derive2 { name="helsinki"; version="1.0.5"; sha256="1vf023n93cq67dk139rszj3y8bc91z7rlagrv2z0y8mqpndi03am"; depends=[curl dplyr httpcache httr jsonlite purrr sf xml2]; }; + hellorust = derive2 { name="hellorust"; version="1.0.1"; sha256="10vkj15jz0qdgxcj2dksizkw2x15bhwnh4q0sp0g8854x88b7f7x"; depends=[]; }; + helminthR = derive2 { name="helminthR"; version="1.0.10"; sha256="0ssw0smxc5zx3d189fq8c6kdg6d7db1sd5iblhz54pg41j9fvqhq"; depends=[httr magrittr plyr rvest taxize xml2]; }; + helsinki = derive2 { name="helsinki"; version="1.0.6"; sha256="1hsmxnfzbi8xvqz97rmq225w9prhxc558slmfxg03y5wpjqdpq4a"; depends=[curl dplyr httr jsonlite purrr sf xml2]; }; heplots = derive2 { name="heplots"; version="1.4-2"; sha256="1knk7w23x3ycxr79vfp9399xfcrrj46bkzxbav3m9z9r36bx6j2x"; depends=[broom car magrittr MASS purrr tibble]; }; here = derive2 { name="here"; version="1.0.1"; sha256="0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88"; depends=[rprojroot]; }; hereR = derive2 { name="hereR"; version="0.9.0"; sha256="1p5qvhqmh64dc9kxzv0cxf8v65q3d30yn6znd69bnaf3qn020lxw"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; - hergm = derive2 { name="hergm"; version="4.1-9"; sha256="0jqgkvg4kypialb0lrp4p8idxq9c3yalq5k1bv7602mlikyzy5w8"; depends=[ergm igraph intergraph latentnet Matrix mlergm network Rcpp sna stringr]; }; + hergm = derive2 { name="hergm"; version="4.1-10"; sha256="04vr5mmsr39rpjnans8xwp1z304rd3hi5za7qhjv7dn5s8c8pw9h"; depends=[ergm igraph intergraph latentnet Matrix mlergm network Rcpp sna stringr]; }; heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; }; heritability = derive2 { name="heritability"; version="1.3"; sha256="0a0pw8hppkgypl4jaa38hks9nxfwz2zbsd4w6w40j1hxlyy4km8m"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; - hermiter = derive2 { name="hermiter"; version="2.1.0"; sha256="1z9zrmyxx7dgsi0zblp15saw1iz79sc2r9zyirdzqmz010rnm19y"; depends=[BH Rcpp]; }; + hermiter = derive2 { name="hermiter"; version="2.2.0"; sha256="0cfww9klf6iziac6p8psjbjixq1p85bsb2fl8nldhjz9psi9fk5x"; depends=[BH Rcpp RcppParallel]; }; hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; hesim = derive2 { name="hesim"; version="0.5.3"; sha256="115c6f0i0j7i4k2rf5m6f4a9v8mz99mfvv560v0v12g9gjj9lncb"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; hetGP = derive2 { name="hetGP"; version="1.1.4"; sha256="1nm4kkg0jwlp21flviiw187jih4y1s6lqn3j0f2s1h81rh1vvvzf"; depends=[DiceDesign MASS Rcpp]; }; @@ -10493,8 +10554,7 @@ in with self; { hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.1"; sha256="1cqwn09iqgh6131cm4b5j0kx7k5vil0ak42v064g4maayj0yqy7p"; depends=[surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; hhsmm = derive2 { name="hhsmm"; version="0.3.3"; sha256="1bi0jbzc8gk8l9x748281hlid9r8zrfzwjdjx3vhbsjcqf55299x"; depends=[CMAPSS cpr magic MASS mice mvtnorm progress psych Rcpp Rdpack splines2]; }; - hht = derive2 { name="hht"; version="2.1.4"; sha256="0i4rjr507k555pvf7q6y6b3df56rjc6igrv8dk0mhyfws49jw9m9"; depends=[EMD fields spatstat spatstat_core spatstat_geom spatstat_linnet]; }; - hibayes = derive2 { name="hibayes"; version="1.1.0"; sha256="0zypyrp0wlawbslavc8gj3vydr6jcrgg92ygfp4xi7s64l1gcqw3"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo RcppProgress]; }; + hibayes = derive2 { name="hibayes"; version="2.0.0"; sha256="15kk6jpm9brrl6257dh57z57dd3zndqxz0qwj1nxfc06zrs3bppi"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo RcppProgress stringr]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; hier_part = derive2 { name="hier.part"; version="1.0-6"; sha256="15wlpb2rsn6am8galsbjiy4psp78nlv1x2hz3cnqbwj508w6gsj0"; depends=[betareg gtools MASS]; }; hierBipartite = derive2 { name="hierBipartite"; version="0.0.2"; sha256="1f6agxrv363wksi33b29v42hys90351ninb4li9m52n0kzv25m1f"; depends=[irlba magrittr]; }; @@ -10514,8 +10574,8 @@ in with self; { highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.9"; sha256="0kgdv2vf1lz3b5kbal9s83gg6812nw7fvrq0rkyr0v4k1lwi3zxy"; depends=[xfun]; }; - highriskzone = derive2 { name="highriskzone"; version="1.4.7"; sha256="1ylbmk6a2d6prwips2da6syzxpbfhda93abdw98pjj658p7l3m0r"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_core spatstat_geom spatstat_random]; }; - highs = derive2 { name="highs"; version="0.1-4"; sha256="0yyfyk8dw1q7firqnq83ymwknbnaw3r9rzxdmw3f9pbvkcpgi4n3"; depends=[checkmate Rcpp]; }; + highriskzone = derive2 { name="highriskzone"; version="1.4.8"; sha256="167xj46v3m85pbwxw8cm0jcb1b8srqggsnk6wbjv2b0vgxm65rzg"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_explore spatstat_geom spatstat_random]; }; + highs = derive2 { name="highs"; version="0.1-5"; sha256="1b59ip3y2kqcp4q035857ds1y75sll1n78x51zhfpqfwkdx5258j"; depends=[checkmate Rcpp]; }; higlasso = derive2 { name="higlasso"; version="0.9.0"; sha256="09d500jsxlrv658i90xnb2wj1ad89v1iwb6y7vascyvg3cff104h"; depends=[gcdnet gglasso purrr Rcpp RcppArmadillo]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hilbert = derive2 { name="hilbert"; version="0.2.1"; sha256="1vw1rn5adnqi99v5w47jmqx35rqv0slas3ldw7g34il1krz9xhms"; depends=[cpp11]; }; @@ -10524,7 +10584,7 @@ in with self; { hillR = derive2 { name="hillR"; version="0.5.1"; sha256="0yz2f3zz28k36f6afya5cg7k6kvyz6nzafr53pw6liy086nfrb9n"; depends=[ade4 ape FD geiger plyr tibble]; }; hilldiv = derive2 { name="hilldiv"; version="1.5.1"; sha256="1jp4xvrpqd575y2x0i73s0bq708bzi6gdhqgz85bia6d5kf05lq9"; depends=[ape data_table FSA geiger ggplot2 ggpubr qgraph RColorBrewer scales vegan]; }; hillshader = derive2 { name="hillshader"; version="0.1.0"; sha256="12phdpkjc4gyk9ri33x86dzxb03llhpqf43vin9ssfr23sbblnqh"; depends=[raster rayshader scales]; }; - himach = derive2 { name="himach"; version="0.3.0"; sha256="1v9pykliqrwab6vmjlbqbyq4i7xx7xy1l1fbmim45a924fx8ghqs"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom purrr s2 sf tidyr]; }; + himach = derive2 { name="himach"; version="0.3.1"; sha256="11p6g1w77yx8cxrvhy53dllyjk4z3jiq9mhz3bjr2kbzi954mysf"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom purrr s2 sf tidyr]; }; hindex = derive2 { name="hindex"; version="0.2.0"; sha256="01mcd2br33qqkfcyxl584f3l6kyb2cgzpd207p0mynzdaallgxgc"; depends=[foreach ggplot2 purrr]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-3"; sha256="00ppz8009cp0wbkmrxdg8x9jjqqb803bl6ki13hsqz07aya0j4iy"; depends=[]; }; @@ -10537,13 +10597,13 @@ in with self; { historicalborrow = derive2 { name="historicalborrow"; version="1.0.4"; sha256="0g7fs6qn957s3zw4ibbqszn2zpncpf6m41r68dw8g6x942mr0fhv"; depends=[dplyr ggplot2 Matrix posterior rjags rlang tibble tidyr tidyselect]; }; historicalborrowlong = derive2 { name="historicalborrowlong"; version="0.0.5"; sha256="0vw6sahdzcg32mnfja98ji8a4jg1hh3q0455x2shhkjv9rwyqsj4"; depends=[BH clustermq dplyr ggplot2 MASS Matrix posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect trialr withr zoo]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; + histoslider = derive2 { name="histoslider"; version="0.1"; sha256="1458bh7by00izx4q9idl479f08i3gk2g59mmzfvh945vbf399km0"; depends=[htmltools reactR rlang shiny]; }; histry = derive2 { name="histry"; version="0.2.4"; sha256="01rdpzkfq7nyiq1gh0cm89dn3466cmhgfj9x19lhl2yvh8xsdz8x"; depends=[CodeDepends evaluate fastdigest roprov]; }; hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; }; hitandrun = derive2 { name="hitandrun"; version="0.5-6"; sha256="0r0iymcmhiv3q1n7mrn3zsz2libfq3cdsq517k7kdk9m35piqrcg"; depends=[rcdd]; }; hive = derive2 { name="hive"; version="0.2-2"; sha256="0ihghpfsk73lndrfrk5907kdsih9s0a7xq23zcyfaa05nk98510n"; depends=[rJava XML]; }; hkclustering = derive2 { name="hkclustering"; version="1.0.1"; sha256="19syq06y5dl0mcwyaxr7w1hj8ffp5s140j72djcz0lljhskzmp6f"; depends=[cluster]; }; hkdatasets = derive2 { name="hkdatasets"; version="1.0.0"; sha256="1a594fgwc5bvimwp5m2zpb6pjy4iavcylxdmsq3hrnh9ll5g5582"; depends=[fst]; }; - hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hlaR = derive2 { name="hlaR"; version="0.1.5"; sha256="1xfvishb5snrgf0sz3s46wq4v8w2mnyaasncflqvvdkj05xqyl9k"; depends=[devtools dplyr janitor purrr readr reshape2 schoolmath stringr tibble tidyr tidyverse]; }; hlidacr = derive2 { name="hlidacr"; version="0.2.0"; sha256="02l86bvb4w8wdq9mk9zh5wkf5i5y5jlgld0ciz851p5ra70c395p"; depends=[curl glue httr jsonlite purrr stringr urltools usethis]; }; @@ -10551,8 +10611,7 @@ in with self; { hmcdm = derive2 { name="hmcdm"; version="2.0.0"; sha256="06nc9w1fghxbxfjckqqq7z6c8kc3ksxasdkya987kx1qfgyph9r8"; depends=[bayesplot progress Rcpp RcppArmadillo rstantools]; }; hmclearn = derive2 { name="hmclearn"; version="0.0.5"; sha256="0zalvgnibd1kygryqcah5d008y6a0nxpy61yyiqsriw89r01jyjk"; depends=[bayesplot MASS mvtnorm]; }; hmeasure = derive2 { name="hmeasure"; version="1.0-2"; sha256="0l4nlny532kddiaa1nmgd37971whhwzb54mb1pvbwax7fsg6hmhw"; depends=[]; }; - hmer = derive2 { name="hmer"; version="1.0.1"; sha256="0rywb6xhgmyhg0lpjdz7n3n28bbx2b9npic7kjp2ksq18m9bwq7x"; depends=[GGally ggplot2 isoband lhs MASS mclust mvtnorm purrr R6 rlang stringr tidyr viridis]; }; - hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; }; + hmer = derive2 { name="hmer"; version="1.2.0"; sha256="0piz1imjfhn3lqnl4j8rph79vrix3z1cjqcmxrq1fky1gcjsgwl1"; depends=[GGally ggplot2 isoband lhs MASS mclust mvtnorm pdist purrr R6 rlang stringr tidyr viridis]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-9"; sha256="1cwsgjf258hwyf12sn54iqiliikmadbknlvhclhmqrr2vvj7561f"; depends=[nnet]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hmmr = derive2 { name="hmmr"; version="1.0-0"; sha256="1m0jmw0i66hm5z5rycvpdmasq8zhgsz91km491n0n923mm480hmh"; depends=[depmixS4]; }; @@ -10589,7 +10648,7 @@ in with self; { howler = derive2 { name="howler"; version="0.2.1"; sha256="00l1952hf2ngypg67y88rgn0xiicsjsyl6xf8r9r65ar9k0fl3yb"; depends=[htmlwidgets shiny]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; howzatR = derive2 { name="howzatR"; version="1.0.1"; sha256="00mv9qkn4ndp74jwqkjwqmy7j8ywhpl4ycg81yw3xlabbnqb292j"; depends=[magrittr rlang]; }; - hpa = derive2 { name="hpa"; version="1.2.1"; sha256="0z60j7ydbifwsp2flksgswnw3zrr0gamkng4nrbbsz7zxmagsxml"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + hpa = derive2 { name="hpa"; version="1.3.0"; sha256="0vhpvvzwxbqv4qm9489rxs50pz0jcpd5dqpg5wi96i9npcymmqcb"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; hpcwld = derive2 { name="hpcwld"; version="0.6-5"; sha256="1w7jpfnaqm9qhr52ixyihzwqklhf2pccshhpvf57pra3vc6cwv2l"; depends=[]; }; hpiR = derive2 { name="hpiR"; version="0.3.2"; sha256="0gz9ngnjgys7hzijsma2iyywwiv7vjar5gls28ds11wq8pmsv96n"; depends=[dplyr forecast ggplot2 gridExtra imputeTS lubridate magrittr MASS pdp plyr purrr ranger rlang robustbase zoo]; }; @@ -10605,7 +10664,8 @@ in with self; { hse = derive2 { name="hse"; version="0.0-28"; sha256="14w09wm1kk7b4q8cl5cwjfqvzm2fb4ls8qjw6i0l54184fmw4dah"; depends=[]; }; hsem = derive2 { name="hsem"; version="1.0"; sha256="0dgp65isbfmw0q4sn36l5226sf6vrl7mvn7gn50xvgybh0l6y7vk"; depends=[boot Matrix mvtnorm numDeriv]; }; hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; - hsrecombi = derive2 { name="hsrecombi"; version="0.4.2"; sha256="1d2dah63gl8gfzjz9rq9d3d62fqc3q6p0yc81rbx543220q3ll7v"; depends=[curl data_table dplyr hsphase quadprog Rcpp rlist]; }; + hspm = derive2 { name="hspm"; version="1.0-0"; sha256="1fp2mf9rs7l3dhhc7njf2fbkq9pyszm3r3409jzrhmfjzfk61qwl"; depends=[Formula Matrix spdep sphet]; }; + hsrecombi = derive2 { name="hsrecombi"; version="0.5.1"; sha256="0ghkn5nbf5r4dy3z3kk1pnhmd6ds0xnhvkpx1dz6jgi55hswg3x3"; depends=[curl data_table dplyr hsphase Matrix quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; htestClust = derive2 { name="htestClust"; version="0.2.2"; sha256="081kxhc7sn070ys94pfzjf3gi2kkqwrqx2sclbgz4ihahqkbnhhr"; depends=[bootstrap MASS]; }; @@ -10615,12 +10675,11 @@ in with self; { html5 = derive2 { name="html5"; version="1.0.2"; sha256="1icji4y2x7bn4nrsf99n8b6g5v053bb9hpwvmp8bf5wh63d1ns8l"; depends=[]; }; htmlTable = derive2 { name="htmlTable"; version="2.4.1"; sha256="14qg65nw0bpikqs1hb1x7apzdzrnnl3ykjnks67kkp46v1skwzrs"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmldf = derive2 { name="htmldf"; version="0.6.0"; sha256="19brwxqnsxzvgsqq3gsjkcyag9ag3xa3mrl5c4s7x48xx2knfh9q"; depends=[cld3 dplyr httr lubridate magrittr processx progress R_utils ranger rvest stringr tibble tidyr urltools xml2]; }; - htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; }; - htmltools = derive2 { name="htmltools"; version="0.5.3"; sha256="0krjyz99q7zvdfg60b128c0zwr36h54gb05jw9c874d8kqv1ni9c"; depends=[base64enc digest fastmap rlang]; }; + htmltools = derive2 { name="htmltools"; version="0.5.4"; sha256="0zij9zrgsi82q5c65sf4pbidnzrkfr763g0n4ypdhf8dd6l2i0h0"; depends=[base64enc digest ellipsis fastmap rlang]; }; htmlwidgets = derive2 { name="htmlwidgets"; version="1.5.4"; sha256="1hgz8sx8xrvfcdwa4q15k942w4qsqg8lyxbbf7qyfzbi807wcgqs"; depends=[htmltools jsonlite yaml]; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; - htsr = derive2 { name="htsr"; version="1.1.4"; sha256="1iz1zbcz6w06x83bj5dw4w6vlqx1gcpy0qhmdjbavn90a3rr2gq7"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; + htsr = derive2 { name="htsr"; version="1.1.5"; sha256="126nxqllsinky22zb8s9rwlms4daw664v9s8jqcffflab2v2xr7j"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; httk = derive2 { name="httk"; version="2.2.1"; sha256="1pxv6ph6qnc6i3sgx2l2ixnsmbqsi1qs5392qxjia3vvx7gd9cmk"; depends=[data_table deSolve magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.11"; sha256="0qsi01fcrkps0h6r7l3l5ph3zlq9gscmq19b9ah2q2qlcv3hk4cf"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; @@ -10648,7 +10707,7 @@ in with self; { hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.1.1"; sha256="0a8xy71dkq2bzdnc90irxmbcxhi0anh87ic22x7b22c3m5605w6s"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate mapproj maps purrr RColorBrewer rlang stringr tidyr]; }; hutils = derive2 { name="hutils"; version="1.8.1"; sha256="0pdya5gdyab5pwpgiw9yfa95m5ynqk154sydsfg56dxq1ihzfr74"; depends=[data_table fastmatch magrittr]; }; hutilscpp = derive2 { name="hutilscpp"; version="0.9.3"; sha256="0sh7s1y8wxwrbhdf8kz3x7myzk5jxv0h1yz1lrh345bvw1jdqb9i"; depends=[data_table hutils magrittr]; }; - huxtable = derive2 { name="huxtable"; version="5.5.0"; sha256="0xc5ahbxprzlj6z5gj680b61na340vcvk3bc0gh9qjgknhdwgk8v"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; + huxtable = derive2 { name="huxtable"; version="5.5.1"; sha256="1ybfqldsla9y04qr4svcw1v7f38kcn6fjsgikdhnfngdz79md3x3"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwep = derive2 { name="hwep"; version="2.0.0"; sha256="07ncpkv79nwk6c5a69iky3q01v24imcpszlhbhpsn739kdqdwa1p"; depends=[BH bridgesampling doFuture doRNG foreach future iterators pracma Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tensr updog]; }; hwig = derive2 { name="hwig"; version="0.0.2"; sha256="06a42a38qsjwijbbr2c8dsd7hjm751g1s4sgcmzvvfi6xy7svl3k"; depends=[asnipe data_table spatsoc]; }; @@ -10661,14 +10720,14 @@ in with self; { hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; - hydraulics = derive2 { name="hydraulics"; version="0.5.0"; sha256="1dhy4mafivp4c2l6klr98xi6963gcrnvgf88bzb0j30fwxqwwhyb"; depends=[ggplot2 gtools reshape2 tibble units]; }; + hydraulics = derive2 { name="hydraulics"; version="0.6.1"; sha256="1yk1s9fnphzmkpx9pfawm72i07kdj099q6i6cry9p08bzvac80xk"; depends=[ggplot2 gtools purrr reshape2 tibble units]; }; hydroEvents = derive2 { name="hydroEvents"; version="0.10"; sha256="1w7nswdmg52ldzzz4gphqnp5gfgh9pvgyq9w0phpzj5ff19bxbxz"; depends=[]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.4-0"; sha256="0fw8b66k7gdkdjxgmdpp3lk9d8p0wmlvhq2rkcvajjb5wd09f43a"; depends=[hydroTSM xts zoo]; }; hydroPSO = derive2 { name="hydroPSO"; version="0.5-1"; sha256="16gdv19yqla80s9fjmvahfn21jv62zivirzs5ch4zm9db54g6bry"; depends=[data_table Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.6-0"; sha256="1msavd2k05apsky88zkk1l3c6y3v95fwhmr6xmwsap70bj25krsv"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; - hydropeak = derive2 { name="hydropeak"; version="0.1.1"; sha256="0hddzvk8bjc31l3qh2pmhxwi8c1zgv3mycw5ki786x4kaym23qiq"; depends=[]; }; + hydropeak = derive2 { name="hydropeak"; version="0.1.2"; sha256="06x1qahavvhaqwdsjg65ixgc6migbm188v3w3vjng5xl2g2ybhqc"; depends=[]; }; hydrorecipes = derive2 { name="hydrorecipes"; version="0.0.3"; sha256="0if79msr8rn1ylk36sqa7maynz20v4y6q7h6xiqijlbnikm7n502"; depends=[dplyr earthtide fftw generics Rcpp RcppArmadillo RcppParallel recipes rlang tibble tidyr]; }; hydroroute = derive2 { name="hydroroute"; version="0.1.1"; sha256="1a1vlbq5cnvhq5mjk9imvj869xmmhq814zvvfysw7jp63z5gvd47"; depends=[dplyr ggplot2 ggpmisc gridExtra hydropeak lubridate reshape2 scales]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.9"; sha256="11ipfp5dnl336wbsw0nrrcd68hccp8igvlrr93rc3hrvif3slkim"; depends=[]; }; @@ -10683,17 +10742,17 @@ in with self; { hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hyperoverlap = derive2 { name="hyperoverlap"; version="1.1.1"; sha256="10kcphn5zl1pl70xg9bn947i9mbnjxk03p6y7xhdlv152cihffw0"; depends=[e1071 ggplot2 MASS matlib misc3d rgl]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="3.0.4"; sha256="0wncmffj5rjpwwnfminjrmd3wj8x4yav87bbliffd520wrv758jz"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; + hypervolume = derive2 { name="hypervolume"; version="3.1.0"; sha256="1zyp7w2mc5icp928m3lgvil6lk5ck8877kxbgz0wiimsxm0sdgcp"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hypr = derive2 { name="hypr"; version="0.2.3"; sha256="08aga0cpmlq550f0k9gzfxgnwg9k5n8d7jcmvzz4k8bq2i3cnysk"; depends=[cli magrittr MASS Matrix pracma]; }; hypsoLoop = derive2 { name="hypsoLoop"; version="0.2.0"; sha256="0kwxzw2r406li2pmby92a3jik4k3z1vdgs54m4q45a8r8vz3y1nn"; depends=[dplyr ggplot2 PolynomF sf sjPlot stars terra]; }; - hystReet = derive2 { name="hystReet"; version="0.0.2"; sha256="01nrbk48r1hf1yc953yf1pzryzrjjckwdqhb3pbnwfza8q0aqsfq"; depends=[httr jsonlite lubridate]; }; + hystReet = derive2 { name="hystReet"; version="0.0.3"; sha256="1vrby9lgy0nm5wa5r1y3k3l2s9fc8vdf4szy8isvnzayr464xvwi"; depends=[httr jsonlite lubridate]; }; hysteresis = derive2 { name="hysteresis"; version="2.7"; sha256="1nnfr50nafhimj2j5xpxly3i8xvkwwddz864gklwm9jzdpmv02yh"; depends=[car MASS msm]; }; i18n = derive2 { name="i18n"; version="0.2.0"; sha256="1ksvrrpymflfbr7acnv3sh4xa0xqjp44ngdpkp500p50mwpww1wr"; depends=[magrittr]; }; i2dash = derive2 { name="i2dash"; version="0.2.3"; sha256="0pj4s47nbs67jnnk0dsna59lrn983zzkybbf6hf4s77sikshmwf0"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; }; i2extras = derive2 { name="i2extras"; version="0.1.2"; sha256="0h9hy9qbw2lk0pxhrn2gygmcx731r38pj08iyfci5axp8fs0cizs"; depends=[data_table dplyr ellipsis ggplot2 incidence2 rlang tibble tidyr tidyselect trending vctrs]; }; - iAR = derive2 { name="iAR"; version="1.1.0"; sha256="1zzfazrkxpfv6nsy5x2ik14zhslda6xnl5wcl059hjbj3vvlhlcp"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; + iAR = derive2 { name="iAR"; version="1.2.0"; sha256="0svxn81a0yq3m51594zrpy99i8p9zcfjzbxsi19yyfcm6iymzv24"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; iAdapt = derive2 { name="iAdapt"; version="2.0.1"; sha256="050kzacvf19m8s89layqqf0l85db1k4cd3akb16jrv9wjfi9k61v"; depends=[Matrix shiny shinydashboard]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3.1"; sha256="0xq4q4kc2f0whrxz1vmi2gca9pxqix2qm4sfkwbch85if2k8l8fj"; depends=[msm Rcpp RcppArmadillo]; }; iBST = derive2 { name="iBST"; version="1.1"; sha256="0nyyzhscysc7dail5mwnw5w044q88m8sk2lg4xdkw52pdkw1a9z0"; depends=[Rcpp rpart survival]; }; @@ -10736,13 +10795,13 @@ in with self; { iadf = derive2 { name="iadf"; version="0.1.2"; sha256="18r9qyhicbfrkpqnxnn5i854s0afq4pnbaw2ckw1qrhy3pzys6zp"; depends=[dplR dplyr manipulate rlang tibble tidyr tidyselect]; }; iai = derive2 { name="iai"; version="1.8.0"; sha256="0gmfvzzc9yaisjkwdjddwg3cpxcm0gij7q74xxvmp076zplg09jv"; depends=[cowplot ggplot2 JuliaCall lifecycle rappdirs rjson rlang stringr]; }; ialiquor = derive2 { name="ialiquor"; version="0.1.0"; sha256="0nrp75lzb49lhkxspvaq6wx5c48ny6fq9m3r1bz0v5f2fd5ilrdx"; depends=[]; }; - iapws = derive2 { name="iapws"; version="1.0"; sha256="1njbarbl0a146x8y9g9y1r0yd2hjr2r67nqzaqha85dgfxn4x84j"; depends=[]; }; + iapws = derive2 { name="iapws"; version="1.1"; sha256="115m678kb2bz450pjg8a5jrjj3g2q2cgpyg9cksz3ysm6j5vrb1a"; depends=[]; }; iarm = derive2 { name="iarm"; version="0.4.3"; sha256="0ib8b37inq1hdzjm9y9bvk8x1qzn08vkvj3y75gg1swsqxh8w106"; depends=[eRm ggplot2 gridExtra Hmisc psychotools vcdExtra]; }; ib = derive2 { name="ib"; version="0.2.0"; sha256="10h3b9ncz59rp8j628axnrl7gksjiyg576672dhcyd3ygd4by7p5"; depends=[betareg Formula lme4 MASS Matrix Rdpack VGAM]; }; ibawds = derive2 { name="ibawds"; version="0.5.0"; sha256="1w4hm4gn5v7xj3gn54c3r0276c7ic441hn34q3j5qxwmh16af6qy"; depends=[dplyr dslabs ggplot2 magrittr remotes rlang scales stringr]; }; ibb = derive2 { name="ibb"; version="0.0.2"; sha256="11rfrf0ap97rsq0yy23sjahp1bin3j31zdd61p8b5mbp0s0k7ci4"; depends=[dplyr httr jsonlite magrittr rlang tibble tidyselect]; }; ibd = derive2 { name="ibd"; version="1.5"; sha256="0rxvy4hn4fpbv6y214ggkmgfvzwns5mkanp4h8201rjk3v84mk2r"; depends=[car emmeans lpSolve multcomp]; }; - ibdreg = derive2 { name="ibdreg"; version="0.3.6"; sha256="1x8z0vr2cmdks12hxfm0wwxskb0cr669w5j5rpa2ln8q704yy41g"; depends=[]; }; + ibdreg = derive2 { name="ibdreg"; version="0.3.8"; sha256="0c4svyfd7xjx9k6pl40l7y9rc67zschs0nz1l386xi1m7arsp44n"; depends=[]; }; ibdsim2 = derive2 { name="ibdsim2"; version="1.5.0"; sha256="1qbgk77cszf7hzsvxv2yqz07rzdh4vksxglx3wrzn5v18fm01c2q"; depends=[ggplot2 glue pedtools Rcpp ribd]; }; ibelief = derive2 { name="ibelief"; version="1.3.1"; sha256="0fl2vvyl2qygppcycbnjkmlvq6rmxq18y1hk512d6szgi0czvpls"; depends=[]; }; ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; @@ -10756,7 +10815,6 @@ in with self; { icRSF = derive2 { name="icRSF"; version="1.2"; sha256="1a7046lspk70cvrvzwzhnqcmc3cqa5a9bmzlw012jvcn39m2ca3l"; depends=[icensmis Rcpp]; }; ica = derive2 { name="ica"; version="1.0-3"; sha256="0rdqd3kz2cv3xvf6yz55bwhsg3k7j90d450i3azs2xkbn4q3aka7"; depends=[]; }; ical = derive2 { name="ical"; version="0.1.6"; sha256="1raanaagas1c8w66d8s045z5ip1i97xca4233d55jk6cazv0mb1w"; depends=[V8]; }; - icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; icardaFIGSr = derive2 { name="icardaFIGSr"; version="1.0.2"; sha256="1yysqkyr36388i8za8jhz0m1vdn3jv8kpb24pnhbxlwsq8r5x0jr"; depends=[caret doParallel dplyr foreach ggplot2 httr leaflet magrittr plotROC plyr raster reshape2 sp]; }; icarus = derive2 { name="icarus"; version="0.3.1"; sha256="0ipbhzvwdn1cnzgdw33cwv901768srxfi588bimjx2ssl80mqn3a"; depends=[]; }; iccCounts = derive2 { name="iccCounts"; version="1.1.1"; sha256="0h1bjnyl24i2y8z1pys4k89q2dy5cfd808bc7w54j1vyyap0k899"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; @@ -10779,7 +10837,7 @@ in with self; { icesSD = derive2 { name="icesSD"; version="2.0.0"; sha256="1k0i79hh63bmsqw5m6ym2h3dydrjji57lkysp5n9x293lgh04pf2"; depends=[httr icesConnect]; }; icesTAF = derive2 { name="icesTAF"; version="4.0.0"; sha256="1qzy0hplrxvdkvly25ny3fysqdhw538phwgnhshq761sa8gdq8vf"; depends=[purrr roxygen2 TAF]; }; icesVocab = derive2 { name="icesVocab"; version="1.2.0"; sha256="0cd2w0w2m176mpfd3lzvxl88bcli1qrkjrli539i764nlyh0ipl0"; depends=[xml2]; }; - ichimoku = derive2 { name="ichimoku"; version="1.4.2"; sha256="0jv7jli3kv8iqffhn6xvz0dhzkxgly546l154xx95jdapgvwmjgy"; depends=[ggplot2 jsonlite nanonext shiny xts zoo]; }; + ichimoku = derive2 { name="ichimoku"; version="1.4.3"; sha256="11vmjmi1csmnhwbkd4lspa7cmvh2rs2qrq7ncnl5wnnjf9ljrn2m"; depends=[ggplot2 nanonext RcppSimdJson shiny xts zoo]; }; icmm = derive2 { name="icmm"; version="1.2"; sha256="179q8w60g4yrv6wqgfmg47by1zc1mbhsdjgl7jq4wirqvwnxvgym"; depends=[EbayesThresh]; }; iconr = derive2 { name="iconr"; version="0.1.0"; sha256="17q7zj92yrj49slmrpwkxkjd0imrl9ildms9zj8qx7yc7dcv4c1s"; depends=[igraph magick rgdal]; }; icosa = derive2 { name="icosa"; version="0.10.1"; sha256="025bqlgx4p1kxpmizfzgiamcq2f5nj5m2ky25fpgdm714sybvwvi"; depends=[igraph Rcpp sp]; }; @@ -10787,7 +10845,7 @@ in with self; { icr = derive2 { name="icr"; version="0.6.2"; sha256="1xqvzn02x13d706irv83zycpxhm8yq1c34rh1nphddy5gri7gwjb"; depends=[Rcpp]; }; icrf = derive2 { name="icrf"; version="2.0.2"; sha256="1apd9klng8dhd9z9nzqzpx8i84rvpwgyam9mzyh8jk6vd49cgjaf"; depends=[]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; - idar = derive2 { name="idar"; version="1.3"; sha256="16n2vpc6zx8sz2pr8nmza7127s3vwinjrrmmxc63q8cmb1ifi3gv"; depends=[ape FD picante spatstat spatstat_core spatstat_geom spatstat_random]; }; + idar = derive2 { name="idar"; version="1.4"; sha256="082p469ng6gmn48l45n6j2wivv4nq9mkl0pb1nclri2f566l95mf"; depends=[ape FD picante spatstat spatstat_explore spatstat_geom spatstat_random]; }; idbr = derive2 { name="idbr"; version="1.0"; sha256="0silsd3ydrrg924klga8dascxjfmi2czw7sz3ap2j7gkgvxcfcpv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; idefix = derive2 { name="idefix"; version="1.0.3"; sha256="0jqjrg0qfzij5bx8r60wpjghsxnszdxgp58ynj10n7q9hc4fhsys"; depends=[dfidx dplyr MASS Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; @@ -10798,10 +10856,11 @@ in with self; { idm = derive2 { name="idm"; version="1.8.3"; sha256="04ac2yq983vk9v3iyd1p2sqxy8ppdr4p7bcvfbg2d9fanj4b1fa7"; depends=[animation ca corpcor ggplot2 ggrepel]; }; idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; }; idmodelr = derive2 { name="idmodelr"; version="0.4.0"; sha256="11h7l1iv21jxmjwmg0klwiadvwpn1bj055y4a7fqfgsbbqraxlsj"; depends=[deSolve dplyr furrr future ggplot2 magrittr purrr rlang stringr tibble tidyr viridis]; }; + idopNetwork = derive2 { name="idopNetwork"; version="0.1.1"; sha256="0cqnand3yfw2pwanmradwqdd9dyrxw99iric023w12bva826aalz"; depends=[deSolve ggplot2 glmnet igraph mvtnorm orthopolynom patchwork reshape2 scales]; }; idr = derive2 { name="idr"; version="1.3"; sha256="1r6icxf0c0y9wvihwmkk5xqscr1qhacqk3w2076kjm2993f10fbb"; depends=[]; }; ids = derive2 { name="ids"; version="1.0.1"; sha256="1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn"; depends=[openssl uuid]; }; idx2r = derive2 { name="idx2r"; version="1.0.0"; sha256="14d3rasnf8mghwzpg6h4larybgy7drrv0jh71x28qwry49acsqyh"; depends=[]; }; - ie2misc = derive2 { name="ie2misc"; version="0.8.8"; sha256="06nf5g6lcn8wif9k3qd580s2w30yyqqvybzg36q2mil8fnpl2568"; depends=[assertthat checkmate data_table gWidgets2 gWidgets2tcltk lubridate mgsub openxlsx reader readxl stringi]; }; + ie2misc = derive2 { name="ie2misc"; version="0.9.0"; sha256="0cawlkhyfrwwcnqcp1lc1wc4a42ax4r9g9nzbl88sfjxy3fyirkx"; depends=[assertthat checkmate data_table gWidgets2 lubridate mgsub openxlsx reader readxl stringi]; }; ie2miscdata = derive2 { name="ie2miscdata"; version="1.0.2"; sha256="0n5aya9g5xzbnx611ji7bxy2zb04ijmjb8kc6ac7kb2nm9n6dxbn"; depends=[lubridate]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; iemisc = derive2 { name="iemisc"; version="0.9.9"; sha256="1hay4d85xw81cgzkm21db8mssqqb8cw4bsg3qypm59bqwmqpl8md"; depends=[CHNOSZ data_table fpCompare gsubfn iemiscdata pracma r_import rgdal sp stringi testit units zoo]; }; @@ -10810,12 +10869,12 @@ in with self; { ifCNVR = derive2 { name="ifCNVR"; version="0.1.0"; sha256="0qcmgd3vi413n4ipa6ybkr7a1kwxyr2al8cw4gfr8fp2av1sk4vc"; depends=[data_table isotree rmarkdown]; }; ifaTools = derive2 { name="ifaTools"; version="0.23"; sha256="16xf3165gkmh3f9843m0n4wqdwwdfs6rjh64qcpz8srsm2z5y3l2"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.4"; sha256="1cxxk1ysb5ya81g669xyalzmkpfjsjsrrqmvnsg1z0kwh5yv54ds"; depends=[]; }; - ifs = derive2 { name="ifs"; version="0.1.9"; sha256="0gz2zwbv0qvlsc6cv9dk2wfni72ahb6rh1vcsbd52cd6bflh3nh0"; depends=[]; }; + ifs = derive2 { name="ifs"; version="0.1.10"; sha256="0w27z3fjv007717dsn72bm9hbpgzd6pfib6maf9ihnsjllb6k0v5"; depends=[]; }; ifultools = derive2 { name="ifultools"; version="2.0-26"; sha256="1lkmzrh65j6vdb8523axxk9gig5q4zxy08wiqsp16w482d2q2sl1"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; - iglu = derive2 { name="iglu"; version="3.3.2"; sha256="1pki85jxdsd8pvandva6sxqy9ymr18izp88rpmmsvay14wk7jfwx"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork scales shiny tibble tidyr zoo]; }; + iglu = derive2 { name="iglu"; version="3.4.2"; sha256="0ilfkmwmh3xshd67y45v9kvyd69xgf8wmxcw3hxi9zpsb0r4vmsb"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.4"; sha256="00ngw366ir3dxz73v6sc8q6y9hd5wzf09jy4fmwb8hsv4nplnbdk"; depends=[]; }; igraph = derive2 { name="igraph"; version="1.3.5"; sha256="1m4vbc1v2wvjn9df7w9ax0zpr3ys566bqazcakx7vddmnrkmsqcy"; depends=[magrittr Matrix pkgconfig rlang]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; @@ -10824,10 +10883,9 @@ in with self; { igrf = derive2 { name="igrf"; version="1.0"; sha256="1287mx1fpbq9y8jbyb43hlignkqg313rn3kc52pm6b2n77ipkrc6"; depends=[]; }; ihclust = derive2 { name="ihclust"; version="0.1.0"; sha256="049jlx8bspl1md06zyh3m7fr666cymmcwarsjrkr8pdd7vlg918j"; depends=[doParallel factoextra foreach ggplot2]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; - iheiddown = derive2 { name="iheiddown"; version="0.9.5"; sha256="06daza20mxki18kxjc9ycyjm7vvvrrd44gzb9pcfd5cyfbg4h12v"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; + iheiddown = derive2 { name="iheiddown"; version="0.9.7"; sha256="1h7cb52wk0z5na543v78vjj2xh77kj3nwgl5vgqnf5186mrknh5v"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; - iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; - ijtiff = derive2 { name="ijtiff"; version="2.2.8"; sha256="0r7r2pxs0q97sm56ypg372aazvv85dx516sziw33gg4dn59b1qz3"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; + ijtiff = derive2 { name="ijtiff"; version="2.2.9"; sha256="1v8np6m8dqc6a3crz3gi6yl8i5y2a9sc2nxlds7as0m6gdqrwc69"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; @@ -10850,7 +10908,7 @@ in with self; { imaginator = derive2 { name="imaginator"; version="1.0.0"; sha256="0wjgfsp7dhy8q7rai4bvikmw1y3iancnqdnqlhbi7a563s4mkpkr"; depends=[assertthat checkmate distributions3 dplyr lubridate magrittr rlang stringi tibble]; }; imagine = derive2 { name="imagine"; version="1.5.4"; sha256="0bbkxhwicjy0h24v93h8cvi17ipy82kb4zwkm7pyg8q48bqssdp0"; depends=[Rcpp]; }; imbalance = derive2 { name="imbalance"; version="1.0.2.1"; sha256="14f7p3x8818b1asfynp3w4sxdacsd14dzs7r166s1jdadwwfwi1s"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; - imbibe = derive2 { name="imbibe"; version="0.1.0"; sha256="0l7wn7vcbb466a4i3w302ficdy0jvy2jh5qizfn7ahpcs7lpx6hr"; depends=[magrittr Rcpp RNifti]; }; + imbibe = derive2 { name="imbibe"; version="0.1.1"; sha256="03vaz5vippnmbgs2l4gxpmsnrkxjw7d156ng13r07zicq43g9gwp"; depends=[magrittr Rcpp RNifti]; }; imcExperiment = derive2 { name="imcExperiment"; version="0.99.0"; sha256="0fagasb94q7gxx49c7n4p2cb9j3n5qnfx86s7nvz4naicy96qbyr"; depends=[S4Vectors SingleCellExperiment spatstat_geom SummarizedExperiment]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; imgpalr = derive2 { name="imgpalr"; version="0.3.1"; sha256="0v9npy63mv9r9wnd8pcdw4rkr0bybhhmkj36sza7dah92i06il17"; depends=[downloader dplyr farver jpeg magrittr tibble]; }; @@ -10874,6 +10932,7 @@ in with self; { importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; }; importinegi = derive2 { name="importinegi"; version="1.1.3"; sha256="1r0p01mc9wb24ifldn3dmi0fqxwkp0290h0qrgr72grd34v2xszc"; depends=[data_table dplyr foreign haven rgdal]; }; impressionist_colors = derive2 { name="impressionist.colors"; version="1.0"; sha256="03z5w7y7vbvlnn30r9y3ip93h364f87nhwdb9hcki26csiq2bnlv"; depends=[]; }; + imprinting = derive2 { name="imprinting"; version="0.1.0"; sha256="1rw9x9prw0by4r2prdypqkgs7d2vj5gdjxhw6gk9ikkb3zyvfgmz"; depends=[cowplot dplyr ggplot2 tidyr tidyselect]; }; imptree = derive2 { name="imptree"; version="0.5.1"; sha256="0f087000092ydnpj3ch4mbip8wp32scn8xw4vlkq5lf6130gfs1b"; depends=[Rcpp]; }; imputeFin = derive2 { name="imputeFin"; version="0.1.2"; sha256="11qd43zs8gd3fg3f47lrb6b4r0w7kxczain61bxc67ppzflrafmd"; depends=[magrittr MASS mvtnorm zoo]; }; imputeGeneric = derive2 { name="imputeGeneric"; version="0.1.0"; sha256="16680bkx1p5w0l5jh6g8f0qbcv0alw9xr2gkbhfs0rpbv5canl7f"; depends=[gower parsnip]; }; @@ -10887,7 +10946,7 @@ in with self; { imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; imsig = derive2 { name="imsig"; version="1.1.3"; sha256="175is0b39grc609dskv9274czv4iwnmlg81dl4nr01xdp6f7g487"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; - inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.2.0"; sha256="0c8kkvpiq4djfg1qc127iql4g1b4mzmhhx5hc9f2vi0rhicyng9k"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; + inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.2.1"; sha256="0g4ckd7hicm62ki8yg0a7bkw91gjzdlcrhhvvgsyxb8xq66x28gx"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; inTrees = derive2 { name="inTrees"; version="1.3"; sha256="1afyjh2winb591am1cawchkysyslzv01nwyihvjb7n844pqr5s2j"; depends=[arules data_table gbm RRF xgboost xtable]; }; inaparc = derive2 { name="inaparc"; version="1.2.0"; sha256="0y3m2g5y12wj4af1wiqyi7nlb11avissd59g202rha0wqwzd8q3f"; depends=[kpeaks lhs]; }; inbreedR = derive2 { name="inbreedR"; version="0.3.3"; sha256="0g7h4jgmnbpm4c6pb6fkmpzdg4adkc0k72444jpxbvyddq3hqh24"; depends=[data_table]; }; @@ -10913,7 +10972,7 @@ in with self; { ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; inet = derive2 { name="inet"; version="0.1.0"; sha256="1kjy2kgi5v29yk6pv776gwdqzkscjh96p3iv1j906vh47zp8wrag"; depends=[glmnet hdi MASS]; }; - infer = derive2 { name="infer"; version="1.0.3"; sha256="1m5srhcmkh8wq12pvy57g3g703wilkl8r3gmm5s7lbj103iz7v8b"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr]; }; + infer = derive2 { name="infer"; version="1.0.4"; sha256="1s4q0nslykl0pb2w1i6ni6hkpp7awvp0wks79br3gk5wa1qkvs19"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr]; }; inferference = derive2 { name="inferference"; version="1.0.2"; sha256="171h9zhvaza7fklcg07wk9sm8k2fy39k3cdjkzb3vk8p8acd051v"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.1"; sha256="1ma90f31jcd65l5v3wqbx4x61gw3iay1a2hwjsd5aln1ivbgmzsv"; depends=[data_table magrittr Rcpp]; }; infinitefactor = derive2 { name="infinitefactor"; version="1.0"; sha256="0j6f9q8z81znwakyx4h0l8ypz0y4yv11d7l3rwljmn4rgspyjl5c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -10933,28 +10992,27 @@ in with self; { ingredients = derive2 { name="ingredients"; version="2.2.0"; sha256="11bv4l4fn9kr7y2nfzrwnaya8fi9w3nwcm9vzlqb7dva83rkqbsc"; depends=[ggplot2 gridExtra scales]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; - inlabru = derive2 { name="inlabru"; version="2.6.0"; sha256="0fjjw02scf2sr1i6cl6h28pj10vf6i2jysc8iha1gcc4j02qxfs0"; depends=[magrittr Matrix MatrixModels patchwork plyr rgdal rgeos rlang sf sp withr]; }; + inlabru = derive2 { name="inlabru"; version="2.7.0"; sha256="1b6ykgb1l1bq8mz4b40li6ypxh1r9yxl4jlcv8mwmkkfrgmz9rvp"; depends=[lifecycle magrittr Matrix MatrixModels patchwork plyr rgdal rlang sf sp withr]; }; inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2019.12.5"; sha256="11d8cnrzgq95w7hn234rcwrr1mmrv63f69807pnzxizxbgnp7wz3"; depends=[]; }; - inlmisc = derive2 { name="inlmisc"; version="0.5.5"; sha256="0d7yqbd7bqsk312g28pqgdpcpqd06abyra2inmnj8fkgpmv3wjf6"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex webshot wordcloud2 xtable yaml]; }; inlpubs = derive2 { name="inlpubs"; version="1.0.4"; sha256="0yzi5x4kyjnb6mjfknqs6415ryf44r55qifh9d2s9nzbhk5y11mg"; depends=[checkmate tm]; }; innsight = derive2 { name="innsight"; version="0.1.1"; sha256="0snnr0mqs0qhng4d73dqn2l6zzw11pdyipszxf1mhxh7mmssnn22"; depends=[checkmate ggplot2 R6 torch]; }; ino = derive2 { name="ino"; version="0.2.0"; sha256="16b38gf30n25dz205y77lr8aj0f39bamc6sbgjfq2kg2vbq700iw"; depends=[ao cli crayon doSNOW dplyr foreach ggplot2 mvtnorm optimizeR progress rlang]; }; inops = derive2 { name="inops"; version="0.0.1"; sha256="1y402a9r542hpwd1nfdc07mbgnf9alpnykl9di1v8fy0qly8s0an"; depends=[]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.11"; sha256="1wnz73ggc7xcgynvdlvgz26qkfjmxxy0xg8gkf1far5346g4qd9y"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.2"; sha256="06jb8xzjqywdww8j2i59c8663dfbrhnvj0lh3xm73j39sig6vh7l"; depends=[Rcpp]; }; - insane = derive2 { name="insane"; version="0.1.0"; sha256="144fq1lys6wy78vnmz1vd4ghs8agraj1hgg0vwlxcnbykmf50i95"; depends=[broom dplyr DT ggbeeswarm ggplot2 ggpubr ggthemes glue patchwork purrr readxl shiny tidyr]; }; + insane = derive2 { name="insane"; version="1.0.1"; sha256="0hzznlmvyw0v0a78q7mfnjps8453mmb3pig7srn98bkxv6f6vcp8"; depends=[broom dplyr DT ggplot2 ggpubr ggthemes glue patchwork purrr readxl shiny tidyr]; }; insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insectDisease = derive2 { name="insectDisease"; version="1.2.1"; sha256="0aa85sxmrhvhjrqnrv264bns577v0n0n6rqzm9m4cg9q7dilhxsn"; depends=[plyr taxize]; }; insee = derive2 { name="insee"; version="1.1.5"; sha256="1f6y19dysm0mh3fkrwnqcgi5j1lzy08m3ij3wrx26q2vgwv5lkfg"; depends=[crayon dplyr httr openssl purrr rappdirs rlang stringr tibble tidyselect xml2]; }; - insight = derive2 { name="insight"; version="0.18.6"; sha256="1bhwfx75lnjrvn6byl2dn8fzfh2in2msghxwyy9jwpvnxk4c63db"; depends=[]; }; + insight = derive2 { name="insight"; version="0.18.8"; sha256="01bm7w8f80i550gwv41kakaxp0d5a2pqa2s3ihz36snkczmdlapm"; depends=[]; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.12"; sha256="1k9dszjfpvpc10qr9nbw5r55mdwslgblhlrgnqjnwx9i89j03mlk"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp rlang tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; instagramadsR = derive2 { name="instagramadsR"; version="0.1.0"; sha256="1g2gikps3qraa12x8vfxsyanxg2mkcix57pcsh5myi1lcp5r2y5z"; depends=[jsonlite]; }; - install_load = derive2 { name="install.load"; version="1.2.3"; sha256="0z4klcpwdlmhwvk41z9q4c4382z8glad27h0gai93zyciy44sdyx"; depends=[assertthat checkmate fastmatch]; }; - installr = derive2 { name="installr"; version="0.23.2"; sha256="1xyzap1injimyib16srhbm0hchh1bcd5vg9d9wbvhf8dlpkaxw4q"; depends=[stringr]; }; + install_load = derive2 { name="install.load"; version="1.2.4"; sha256="0ylis31bxyqhjpwb1fwadgb8wwrcjq4p8mrznqckrx6a0f6sai0m"; depends=[assertthat checkmate fastmatch]; }; + installr = derive2 { name="installr"; version="0.23.4"; sha256="1qlwcww3bgbdfqk2qi1vvis11bnvkkwa6h2l195knhx0i0ha8pfj"; depends=[stringr]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; insurancerating = derive2 { name="insurancerating"; version="0.7.1"; sha256="0sd8bwfb7gv4yq2slm1msw5an19f5fc7a1w7c6byc26whkhdzj10"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree fitdistrplus ggplot2 insight lubridate magrittr mgcv patchwork scales stringr]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; @@ -10967,7 +11025,7 @@ in with self; { intePareto = derive2 { name="intePareto"; version="0.1.2"; sha256="0shq97r6x4j7p9vcf855jcvmfhghngbhk5dfqlqqhhcf8ibm2si5"; depends=[biomaRt DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges rPref Rsamtools]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.7"; sha256="15f04p97fvqdq971adyafm3ljirfxz90lv096fdqn2vk0sq5dwyj"; depends=[abind doParallel foreach ltm MASS mclust]; }; integr = derive2 { name="integr"; version="1.0.0"; sha256="172vj29bdk42ibgwj7dl06wslpg2dccp1i8iscbz1yd0j5kw36sq"; depends=[DiagrammeR DiagrammeRsvg dplyr gtools rsvg]; }; - intensegRid = derive2 { name="intensegRid"; version="0.1.1"; sha256="15vjf39fx6bkay15nbmqnv5vp8w6xy6fzf1lglqr6506pyaqh8w8"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; + intensegRid = derive2 { name="intensegRid"; version="0.1.2"; sha256="1dhk14rxy7c2pawcg89bhbnx30nzi5hppywmf41aa7f40x2m7wxs"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; intensitynet = derive2 { name="intensitynet"; version="1.3.1"; sha256="0g0lkbfyg0f104avr0y46caaa300yibzqlbhn32hl03sa0dqd6c3"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; interactionR = derive2 { name="interactionR"; version="0.1.6"; sha256="1k6fn0y69s8dq14yqqai4qm97cdyp7sfn8ni19xs2h8hwgmxdhf9"; depends=[car flextable msm officer]; }; @@ -10985,7 +11043,6 @@ in with self; { interp = derive2 { name="interp"; version="1.1-3"; sha256="0gzsnlg8f7knb100n6vv6307c3v2jd8f9qzrq62jkc6g71mn0kmp"; depends=[deldir Rcpp RcppEigen]; }; interplex = derive2 { name="interplex"; version="0.1.0"; sha256="04ylskk2i9pmidknz5wfwba87d710gycrw3p3d29nd2s433scrbk"; depends=[]; }; interplot = derive2 { name="interplot"; version="0.2.3"; sha256="1qs0ni16rbjilkahn15yn9sil3ba4n935bxpdbpwlsjina504jqj"; depends=[abind arm dplyr ggplot2 interactionTest purrr]; }; - interpret = derive2 { name="interpret"; version="0.1.26"; sha256="0f7bhz5gj0f5dxjcc9xlrx4y474akn6q0d7z71yypyw6bawvqkbn"; depends=[]; }; interpretCI = derive2 { name="interpretCI"; version="0.1.1"; sha256="1jg2dpfrhb1kij2z0gq4sw1lrb4v2sky13dpfmdnaz2k5xqnih2s"; depends=[aplot dplyr english flextable ggbeeswarm ggplot2 moonBook officer patchwork purrr RColorBrewer rlang rmarkdown rstudioapi scales tidyr]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; inters = derive2 { name="inters"; version="0.1"; sha256="0z0sx02ami2mk5ppdawy9j9lb7nmn25b9g6lanchqhxmiffzg3r1"; depends=[fixest glmnet]; }; @@ -10993,7 +11050,7 @@ in with self; { intervalaverage = derive2 { name="intervalaverage"; version="0.8.0"; sha256="07p9r358q3jxm8n7nypxmvpfnh61njivcwaplgzzxrlcbway6fq9"; depends=[data_table Rcpp]; }; intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; - inti = derive2 { name="inti"; version="0.5.7"; sha256="19b3f776aaldwiy7fpkgr92jnkajyz1fgci8s619qqq986jj7pah"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.5.8"; sha256="1czzbf8lmhx7wh1skcv2fc2cizyrdr9hyjavl0cwicanq4jpvhmi"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; @@ -11007,7 +11064,7 @@ in with self; { invctr = derive2 { name="invctr"; version="0.2.0"; sha256="1sywjw078rc6nqiz1j77sd7c15nbjjpwqqni3363zzw5c3hgrpx5"; depends=[plyr rlang]; }; inventorize = derive2 { name="inventorize"; version="1.1.1"; sha256="0pbm9iw4v6wqr4qs5g2nfkgiaq75qdfcdicazy94fwwfvx5xbgbv"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; inverseRegex = derive2 { name="inverseRegex"; version="0.1.1"; sha256="1ca6adv602mh6fgkjy4qvmradki3wp44iak27i1k4cp3fi9cm986"; depends=[]; }; - invertiforms = derive2 { name="invertiforms"; version="0.1.0"; sha256="131h5dlyj38bis2rk2ji3dpdd45iiavfwb4d6cf0gn8rr7ldkwgl"; depends=[glue Matrix sparseLRMatrix]; }; + invertiforms = derive2 { name="invertiforms"; version="0.1.1"; sha256="0n3ksfdryk0g6f60acxh4i9f5z6gi9bsbal95z9pcd1vgvyhr1xw"; depends=[glue Matrix sparseLRMatrix]; }; investr = derive2 { name="investr"; version="1.4.2"; sha256="12hrvi3gi3hwianjnzfir4771kbrfbcy35xmfksp0lxrfxvm61ra"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.2"; sha256="1cyl8wvbngdrdkkckng1bs699rjp737j99kbd8r155fjj0370nx4"; depends=[filenamer stringr]; }; @@ -11017,12 +11074,13 @@ in with self; { iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; iotables = derive2 { name="iotables"; version="0.9.1"; sha256="1xs6hfr1h8mpm2ksbrx7kjqi01rvgfczsnxmv70czwpsc3lbzrdf"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr tidyselect]; }; + iotarelr = derive2 { name="iotarelr"; version="0.1.2"; sha256="0dsbcjbval74xlcljjhl2lmr146kg8q3fwx9aw6y6spdfidj9cdc"; depends=[ggplot2 gridExtra Rcpp rlang]; }; iotools = derive2 { name="iotools"; version="0.3-2"; sha256="07q0z0kszm1xx5hfhisfliyrcsxd8dc5mx0a2bwwnv5l1xzmix17"; depends=[]; }; ip2location = derive2 { name="ip2location"; version="8.0.1"; sha256="0mf6ncckjjrq4dvd8pifz4izn4vqmsqq0pw36gm1zqzbyyvmqqya"; depends=[jsonlite reticulate stringr]; }; ip2proxy = derive2 { name="ip2proxy"; version="1.1.0"; sha256="1hs7n33cn2drqig0p2ns0bnyx2af58x2rslih3yj85xx0dn87qgp"; depends=[jsonlite reticulate stringr]; }; ipADMIXTURE = derive2 { name="ipADMIXTURE"; version="0.1.0"; sha256="1fl7nyxg7gakjdggdc311wf037zaxwpqsw3ax7liq1pvw6flb9h7"; depends=[ape treemap]; }; ipa = derive2 { name="ipa"; version="0.1.0"; sha256="029vz7pb37vnqm7x6h53p0y7z0nx2s36yklyfn9sz21gknsi983j"; depends=[stringi]; }; - ipaddress = derive2 { name="ipaddress"; version="0.5.5"; sha256="0p6w6qbrpv68akpggqml4krgnazj14jbcafhkv0vk8z3sqskhxk5"; depends=[AsioHeaders Rcpp rlang vctrs]; }; + ipaddress = derive2 { name="ipaddress"; version="0.5.6"; sha256="1hyb29mwg16xk1887kiz68vvw4jpipylyqis16siwiwlzd2yjfn2"; depends=[AsioHeaders Rcpp rlang vctrs]; }; ipc = derive2 { name="ipc"; version="0.1.3"; sha256="10h54j83l7khk1lkpdwn6hwaz31i3v6svg4q1lxzvr2aqdsj7hy0"; depends=[R6 shiny txtq]; }; ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.4"; sha256="12z16c8sv1nhdv70kwx1a0wh588znkv5y5r0s9kcws0n3rjhzh9p"; depends=[survival]; }; ipdw = derive2 { name="ipdw"; version="1.0-0"; sha256="1xar3i4d5pmhcfqjfh54d3qpjglsmnpyidxk29jziy6hwc4rsnaa"; depends=[gdistance raster rgeos sp]; }; @@ -11033,7 +11091,7 @@ in with self; { ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; ipkg = derive2 { name="ipkg"; version="1.0.5"; sha256="0y1gqc61fqjai3vfsn0rdjd0r8g46ls2jvb97h6gfhdafgfxrq7f"; depends=[remotes]; }; iplots = derive2 { name="iplots"; version="1.1-8"; sha256="01s8a43s2spxgmp6px5dpd96p8f4sfp98nxmxk763hg2868rksx3"; depends=[png rJava]; }; - ipmr = derive2 { name="ipmr"; version="0.0.5"; sha256="14hls6cvdfgkc253514vjrfw049ms846llv4677zsi0nqjzgbqkz"; depends=[magrittr purrr Rcpp rlang]; }; + ipmr = derive2 { name="ipmr"; version="0.0.6"; sha256="1h4y0ayq9bnspr17y65fwpa157iylrf0y0iza1zwy4scrvs39aw5"; depends=[magrittr purrr Rcpp rlang]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; ipred = derive2 { name="ipred"; version="0.9-13"; sha256="162ckhqn24l0l5ih7qi2k3lxw5iprm1g5a34q1ik0b9wv5ia0s31"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.7.3"; sha256="15qzqwikxy85fcd7psz363b5wb0kpi85icfyb47hbgdhln8fi2qb"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; @@ -11041,7 +11099,7 @@ in with self; { ipsecr = derive2 { name="ipsecr"; version="1.3.0"; sha256="0rb2x91rq93kgk3pr6lmk0fsrs2x6w5zjh8vd66051wnz239aqbm"; depends=[BH MASS nlme Rcpp RcppArmadillo secr stringr]; }; ipsfs = derive2 { name="ipsfs"; version="1.0.0"; sha256="1cpa0m19nddpp852vyiqw0azx8idyaqv225akfyrych9y8kw9n4d"; depends=[]; }; iptools = derive2 { name="iptools"; version="0.7.2"; sha256="1jjzigv4rh5ds99z6lqqymfiwi4wzfiv3xpqaib10vrchbvlsrhr"; depends=[AsioHeaders BH Rcpp stringi triebeard]; }; - ipumsr = derive2 { name="ipumsr"; version="0.5.1"; sha256="05lm60362jrlyndh8rmn3kpagzpqvc3xjfwrn68g5pcnahp3cb5z"; depends=[dplyr haven hipread httr jsonlite purrr R6 readr rlang tibble tidyselect xml2 zeallot]; }; + ipumsr = derive2 { name="ipumsr"; version="0.5.2"; sha256="1zyd5yvasz8012hhwqihvbbsw8jc6si51gi8zzsqb4vvjwlp5ch3"; depends=[dplyr haven hipread httr jsonlite purrr R6 readr rlang tibble tidyselect xml2 zeallot]; }; ipwCoxCSV = derive2 { name="ipwCoxCSV"; version="1.0"; sha256="0avnvf4pnpxnik3iwwglpwkc8h0vsx9v6fxldkbvq7l9bphdbba1"; depends=[survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; iq = derive2 { name="iq"; version="1.9.6"; sha256="18myhc0ilh2ngj67xq0inx88dzmn6c2q10qyzfpxy3al4zzg98fz"; depends=[Rcpp RcppEigen]; }; @@ -11056,10 +11114,11 @@ in with self; { irrCAC = derive2 { name="irrCAC"; version="1.0"; sha256="1j9z8vz5zcl51a8qq6maf9sw0dqaknkrai7gp31mzag7b6vwms06"; depends=[]; }; irrICC = derive2 { name="irrICC"; version="1.0"; sha256="0vi5g97kbyhwxz242d1hpqf11izd3kmlzh3997v07md1llcsp6s3"; depends=[]; }; irrNA = derive2 { name="irrNA"; version="0.2.3"; sha256="1s50k0vygqh3zcvy5j6h5krv9gfiv8sakmnbf90hpkh0rlirgf88"; depends=[]; }; - irt = derive2 { name="irt"; version="0.2.5"; sha256="13cfmzr7bw5jbcwykvjli5lsnbcr7n8w6nljwsmnsa42fa7f2159"; depends=[Rcpp]; }; + irt = derive2 { name="irt"; version="0.2.7"; sha256="1qckf91pady8gbp0bdbskijyqmmv2d9icb6ihmf0d2r49f37q4fh"; depends=[Rcpp]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; irtoys = derive2 { name="irtoys"; version="0.2.2"; sha256="1qshz6czykgf53mq6xiswzv5xsjwrkrinpfkf1yavql4v08hs82b"; depends=[ltm sm]; }; + irtpwr = derive2 { name="irtpwr"; version="1.0.0"; sha256="009m14v1frwwqxi0vlvxk740ky34xj4k7pn4csl69yk429r8l9a2"; depends=[Deriv digest ggplot2 mirt spatstat_random]; }; irtrees = derive2 { name="irtrees"; version="1.0.0"; sha256="003gmnv2d0xsqd54chadkbd8c8kf8fwr4lza86k6qkfs7d3ifkjm"; depends=[DiagrammeR tidyr]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; @@ -11085,6 +11144,7 @@ in with self; { isogeochem = derive2 { name="isogeochem"; version="1.1.0"; sha256="0sypzabg1dqs3c0ph6h5qdjdn25hfvcsh3hhks60ylpnjn9ck3x0"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; isoorbi = derive2 { name="isoorbi"; version="1.0.0"; sha256="1087k2xyfmbnwid787q0zypa788bixnmrjs3zm04gr5qhdbixc74"; depends=[dplyr magrittr readr rlang stringr tidyr]; }; + isopam = derive2 { name="isopam"; version="1.1.0"; sha256="0cj8gn5m7r1fs4riiw1d3cmpg7zy3dyfpcr40dy18zmp4kg6ff7m"; depends=[cluster future future_apply progressr proxy vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; @@ -11106,10 +11166,10 @@ in with self; { itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itp = derive2 { name="itp"; version="1.2.0"; sha256="0vh5rpl88v5b6s2vfv42ahaphlspiapx82xa74ynic4rmc2ffjis"; depends=[Rcpp]; }; - itraxR = derive2 { name="itraxR"; version="1.4"; sha256="0gybgzc37q1i2zdik1xjn1l6p98jx8r8k722fsgfb17pxj4l4bkf"; depends=[broom compositions dplyr ggcorrplot ggfortify ggplot2 janitor readr rlang stringr tibble tidyr tiff]; }; + itraxR = derive2 { name="itraxR"; version="1.8"; sha256="1fl843dwvn92i4h0ccdp4xn5jwkkhzng367mmrr1ilwa3bq6ziqr"; depends=[broom compositions dplyr ggcorrplot ggplot2 janitor munsellinterpol readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4.1"; sha256="1sdqs279qxr3993hw08xg7b54yq03jw1597cqn6cf24sh9vpw9m1"; depends=[mgcv plotfunctions]; }; - itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.0"; sha256="1ckb7qwy90pr676imr25j89cfy9mvgdy8c7xhrznkvyp154y7wdi"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; + itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.1"; sha256="03nic9v4bc2blncqp7hjgj7381bw7d8izp76kv7pdpvjvrwz1yxc"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; itsdm = derive2 { name="itsdm"; version="0.1.3"; sha256="0d8d2lnw0k01bd1q09qrbazk8a8zphmcf5madw4zaavi4ljqrg5f"; depends=[checkmate dplyr fastshap ggplot2 isotree ncdf4 outliertree patchwork raster rlang ROCit sf stars stringr tidyselect]; }; itsmr = derive2 { name="itsmr"; version="1.10"; sha256="1dr8n95rjbsfvw82v2r8rsahxa26f75icp9fn3hfr0d6g0xpkb69"; depends=[]; }; iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; @@ -11137,13 +11197,16 @@ in with self; { jack = derive2 { name="jack"; version="3.0.0"; sha256="191daxlkkz4494nvnqq6rdk8gkm6ial39cp63dfmkhhd021ay9ld"; depends=[DescTools gmp gmpoly JuliaConnectoR multicool mvp partitions Ryacas]; }; jackalope = derive2 { name="jackalope"; version="1.1.3"; sha256="1cslrl2cvcpi2kisb2plkz8c3wfxkbkf816nnyb06k4mv3gy4r5d"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; + jackknifeR = derive2 { name="jackknifeR"; version="0.1.1"; sha256="165df6yfkxlm2dy43fslhmh909sagbzzmdplvxa6zr3lk703z0ic"; depends=[]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; + jackstraw = derive2 { name="jackstraw"; version="1.3.8"; sha256="04d0ribg8nbxazv92hmzzks2krsx024glfc90cm9dxz7if44cwc9"; depends=[cluster ClusterR corpcor irlba qvalue rsvd]; }; jacobi = derive2 { name="jacobi"; version="2.0.1"; sha256="14nd9bq09674jqbq20q8j7mphw68x2clnh7am1nwfghbjgv2l60c"; depends=[Carlson Rcpp rgl Rvcg]; }; jacpop = derive2 { name="jacpop"; version="0.6"; sha256="0kq6rn33civ2g6i5nwfqvcgmnn5k2dwmw60lkmz4ywm0y4xxlkai"; depends=[]; }; + jadeLizardOptions = derive2 { name="jadeLizardOptions"; version="1.0.1"; sha256="1919qm9b5nb6bjwbqhsnimgn5lhcrrhd90ndnsc9kj3z3khw9mkd"; depends=[dplyr ggplot2 magrittr tibble]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; jagsUI = derive2 { name="jagsUI"; version="1.5.2"; sha256="1ig2v5k1xjggh694azr96cv80qapq8al7dhsjhvkx0dihp8kgad2"; depends=[coda rjags]; }; - jagshelper = derive2 { name="jagshelper"; version="0.1.8"; sha256="0kxgfjq58sx2vmxl12aarz74xqjsdqzbhf2rxnn2rqw09iy0wjgm"; depends=[jagsUI MASS]; }; - jagstargets = derive2 { name="jagstargets"; version="1.0.3"; sha256="0zq7jz2m4y8l7rd7gli2z4bg4q8v2p4yz0y9b3mgmbvqm6yr3xbf"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; + jagshelper = derive2 { name="jagshelper"; version="0.1.11"; sha256="0n8jzzqy4zpzqx461dkma5sg4hvdr15hz2xg1jy7dhf6gz4yljls"; depends=[jagsUI MASS]; }; + jagstargets = derive2 { name="jagstargets"; version="1.0.4"; sha256="08940ki6rfs014kkwsdsnvp45zd52j217n8y0z6mch8kpyawyial"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; jalcal = derive2 { name="jalcal"; version="0.1.0"; sha256="19smqrhvab8f2xb8pa8x6gmvr0r2lwvqisfahixs7aa8lxi708jw"; depends=[]; }; janeaustenr = derive2 { name="janeaustenr"; version="1.0.0"; sha256="1ap8p1lpbj2wz90mpf1vbyzhv2spzv03bi8lwzpsir2y77hjxhxl"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.1.0"; sha256="09nqm957m2f54y2l30619b58x4i7gxwvr2lwg5kly5xy1ya1a1nn"; depends=[dplyr lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; @@ -11157,19 +11220,18 @@ in with self; { jds_rmd = derive2 { name="jds.rmd"; version="0.3.1"; sha256="0mrldh031s5xirmpxr7dpjbz3ylcs7cavs3khhc0q5hhgq2zxydy"; depends=[bookdown rmarkdown]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; jenga = derive2 { name="jenga"; version="1.3.0"; sha256="0yq1nkaakzajjdk3w6hzikl6pwqx0546mcb1ik688b0l55vmwphc"; depends=[abind dplyr entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; - jetpack = derive2 { name="jetpack"; version="0.5.4"; sha256="0rhr313lfvy160ccjdpvyfacskhqcdvglj0dl0krs1r8vv4fcc6m"; depends=[desc docopt remotes renv]; }; + jetpack = derive2 { name="jetpack"; version="0.5.5"; sha256="0c2vvayci7jm1p97ccgb5nccrgvdyid4fgh12cab18xwrwx1hzxx"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jfa = derive2 { name="jfa"; version="0.6.4"; sha256="1ksp4jrch9rhjh1bdscim92sj29j2xn3q4nrddlp2jmhvzaa0dw2"; depends=[extraDistr]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; - jgsbook = derive2 { name="jgsbook"; version="1.0"; sha256="0n03qfi101ln5bp1fzck2dik5zwscl7lq4yxngqnx6rwpfyx8mlk"; depends=[statip]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jinjar = derive2 { name="jinjar"; version="0.3.0"; sha256="10lilj98ppy3cpimn5pzsfkvm5chz4bw1rx3a3frgy56nmapnmsv"; depends=[cli cpp11 fs jsonlite rlang]; }; jipApprox = derive2 { name="jipApprox"; version="0.1.4"; sha256="18ga798iafkqvjmra1xw3fpqzhd7c9qjcvklsifs2s6p8czy06v7"; depends=[sampling]; }; - jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; }; jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; jlsm = derive2 { name="jlsm"; version="0.1.0"; sha256="01wmm7555v31kbmy6lcv9j0rr0cav5vsyhl09l7zh0qm6m3ddw7p"; depends=[boot ellipse expm lvm4net MASS Matrix matrixcalc mvtnorm network pROC]; }; + jmatrix = derive2 { name="jmatrix"; version="1.1"; sha256="1rww7fji1angch5az9cs599fii96189p9f92s8h4fpw54snz2hrw"; depends=[memuse Rcpp]; }; jmcm = derive2 { name="jmcm"; version="0.2.4"; sha256="1dpm94k2s2vx3dvd5rk7xrsq786phl0hq7xi9fjjxbr8qfmxhsck"; depends=[Formula Rcpp RcppArmadillo roptim]; }; jmdem = derive2 { name="jmdem"; version="1.0.1"; sha256="15zrxgd5fgi4wzp4s963pnwj3vkgxs4ygqrcpncy9b6j2cxrivdc"; depends=[statmod VGAM]; }; jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; @@ -11178,7 +11240,7 @@ in with self; { jmv = derive2 { name="jmv"; version="2.3.4"; sha256="0mhai7kvc6fpsybpgj6adnbqsg3nlx16zfjdg6lxkhzjdv0s4gpm"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.3.3"; sha256="0jyrilrh85x5qrkmwp7fvwa9mg8p769qcfnrlj3chv1q2ddfn69j"; depends=[rjson zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.3.13"; sha256="0b5klfn4986haw3hhy3aarf88g08s1d46b8xrpxxqnwqw8yd7l88"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; - jmvcore = derive2 { name="jmvcore"; version="2.3.12"; sha256="1vmjf9sszskf767n92rzpg8lai2g1qgkncgn96j39mgck92vrnqn"; depends=[base64enc jsonlite R6 rlang stringi]; }; + jmvcore = derive2 { name="jmvcore"; version="2.3.19"; sha256="0cwchz7n50sxin65nc1k5bygci2yxp68yypmvq2a0fyf56r53gdg"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; @@ -11197,10 +11259,10 @@ in with self; { jot = derive2 { name="jot"; version="0.0.4"; sha256="0pzlj9vcz7p3zcg2y32cir593x193cxswkc3y9d1xh58vamrgs60"; depends=[cli yaml]; }; journalabbr = derive2 { name="journalabbr"; version="0.4.0"; sha256="17b9igqnd9f9pp1wkpg9zvkmvzhhhnr4nrkgzpvlb0f9hihaj60s"; depends=[data_table httr purrr shiny stringi stringr tidytable]; }; joyn = derive2 { name="joyn"; version="0.1.4"; sha256="17x9rwcrqv7qx9w0cfyshjsij9cdl0fk13cfqbv0ibnc2nfycw87"; depends=[cli data_table glue rlang]; }; - jpeg = derive2 { name="jpeg"; version="0.1-9"; sha256="0wihj538wdnr71wdldym83qadb4kh68a6rkallwbh2f25r27b881"; depends=[]; }; + jpeg = derive2 { name="jpeg"; version="0.1-10"; sha256="1jkqj58hj33ar9wyl7c1cnj3h42icq7crmjk93n933q8qc4zdnf8"; depends=[]; }; jpgrid = derive2 { name="jpgrid"; version="0.2.0"; sha256="15a5gv3jw3r320rnvi5dpwp3psfq08v7im95jnwvk1b53pmabc87"; depends=[dplyr geosphere magrittr purrr rlang sf stars stringr tibble tidyr units vctrs]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; - jpstat = derive2 { name="jpstat"; version="0.2.1"; sha256="1z7j5q081gs0qh7x0dcb4mrqmvnzymhmrbw3m0xs85sx5v88akca"; depends=[dplyr httr lubridate navigatr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; + jpstat = derive2 { name="jpstat"; version="0.3.0"; sha256="1q1zc2micb62sdkar9w9pn3sb42lhhbr5pkfn4rg5iyl0iqpn5sa"; depends=[dplyr httr lifecycle navigatr pillar progress purrr rlang stickyr stringr tibble tidyr vctrs]; }; jqr = derive2 { name="jqr"; version="1.2.3"; sha256="1a91zcjxdilhqdyr2lipnwc35f90h0wyqlbg0vw9ay7sq6llxgs9"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.1"; sha256="0lg647nfijj6grlmwkasd6di5h6286dxmw1373k6n5gwym1g1l36"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; @@ -11213,20 +11275,22 @@ in with self; { jshintr = derive2 { name="jshintr"; version="0.1.0"; sha256="08j28c2ab9fh6g7qp2vl8j5hz5kkikvl2id979kv92ach9vranyd"; depends=[htmltools htmlwidgets rstudioapi]; }; jskm = derive2 { name="jskm"; version="0.4.3"; sha256="04bm4haylhjj5wf09jmpznav7shnlnhag7kxl4yqp3z5572dvj1g"; depends=[ggplot2 gridExtra scales survey survival]; }; jsmodule = derive2 { name="jsmodule"; version="1.3.3"; sha256="1n7kl0jmk3dg2vj4fnl85had2flyz16hynwzyzkankn417m25n2z"; depends=[data_table DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; + json2aRgs = derive2 { name="json2aRgs"; version="0.3.0"; sha256="0n1kj1kll6x7ar00y32pf8z38z7z1bnj29nlv9dx068n4kmy89v7"; depends=[jsonlite yaml]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; - jsonStrings = derive2 { name="jsonStrings"; version="2.1.0"; sha256="0agpkshnqijivvi042f2wkdy34g3z7849rp2p3z0y72bk6a5b2jg"; depends=[R6 Rcpp]; }; - jsonify = derive2 { name="jsonify"; version="1.2.1"; sha256="1kpv6whi6bggi0ij7krzfr0fly6c2j9y54fr5ahgcjp36amr34cj"; depends=[rapidjsonr Rcpp]; }; + jsonStrings = derive2 { name="jsonStrings"; version="2.1.1"; sha256="0936nhm6zx4la7i6fwigz0kvgf9dirz422vhrzjr45f37pyfvkxy"; depends=[R6 Rcpp]; }; + jsonify = derive2 { name="jsonify"; version="1.2.2"; sha256="0bxgyj5b1hnijq5315g050giixy4k5mjz2zdx8yil0igb5ifji9p"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.8.3"; sha256="1w685bwhvqxh8y3b4rmzmbbxsj0sqrdad4rni7dxbiqzd2piszy5"; depends=[]; }; + jsonlite = derive2 { name="jsonlite"; version="1.8.4"; sha256="0y0jzf74c3q1sghgarvwmrkvxs7yahywd342m8c0jsr28bhapskr"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jstor = derive2 { name="jstor"; version="0.3.10"; sha256="0k2y3h01yra8yns97j4yyxa1jmclrd6z5xxiv4m8da5q5cgkc970"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jti = derive2 { name="jti"; version="0.8.4"; sha256="0jxqv3xa9yyzizx1rhxjv65c8b253shridy57skrd5kya701n460"; depends=[igraph Rcpp RcppArmadillo sparta]; }; - jtools = derive2 { name="jtools"; version="2.2.0"; sha256="1aafnjmldg01c25psi47xnqrf5p7kjfcffjknghgw6dczjpn500f"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; + jtools = derive2 { name="jtools"; version="2.2.1"; sha256="1z44rdywbaks471x8z36v3c0ydchycgksgxj9m408bbncb79y3n3"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; jubilee = derive2 { name="jubilee"; version="0.3.3"; sha256="1j2y44pfx9z2k169lh42b4dnfrrnk8jqsjn3wz4l9iscr6r91lx7"; depends=[data_table dplyr readxl xts yaml zoo]; }; juicr = derive2 { name="juicr"; version="0.1"; sha256="0vkbgbagcgaxj6k62b033ik85jnkzvshg8dm9cz7vq4yjqj3icip"; depends=[RCurl XML]; }; + juicyjuice = derive2 { name="juicyjuice"; version="0.1.0"; sha256="0ap1nsyihlagc1yqvwr2x9s16kzb3c8azfi50mzv95275a5l3xb4"; depends=[V8]; }; junctions = derive2 { name="junctions"; version="2.0.3"; sha256="0lm3n8n9dfi9nsdazj74pd57kxm2kzrd1gxdzd0izzwgkjnsrsqc"; depends=[nloptr Rcpp RcppParallel tibble]; }; just_install = derive2 { name="just.install"; version="1.0.2"; sha256="1g82g4lhdk8mf1v4j47y2pgdrryz4175djx42kmg85vw7mlpvlcj"; depends=[dplyr remotes]; }; justifier = derive2 { name="justifier"; version="0.2.4"; sha256="0a9liqxsaf4y02x40bancz5vvqhjzy99gaknmfvw5ngzg0svy55r"; depends=[data_tree DiagrammeR DiagrammeRsvg purrr yaml yum]; }; @@ -11238,18 +11302,18 @@ in with self; { kableExtra = derive2 { name="kableExtra"; version="1.3.4"; sha256="1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9"; depends=[digest glue htmltools knitr magrittr rmarkdown rstudioapi rvest scales stringr svglite viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; kaigiroku = derive2 { name="kaigiroku"; version="0.5"; sha256="11f9lxk4kx3d65i2xnbpw1ixcc9qgahqdirl42aiyph4hzah1fhh"; depends=[dplyr jsonlite R_utils tidyr]; }; - kairos = derive2 { name="kairos"; version="1.1.0"; sha256="16lpza2vl32vhprz4a30jhqm99gd4pcg2k12hngcd4vf50z8cmqy"; depends=[arkhe boot dimensio extraDistr ggplot2 Hmisc rlang]; }; + kairos = derive2 { name="kairos"; version="1.2.0"; sha256="1fivyh61wqkq77aicqc90pihrn2kwir4mpbcp5jl9sklcdmh3l3w"; depends=[arkhe dimensio extraDistr ggplot2 Hmisc rlang]; }; kalmanfilter = derive2 { name="kalmanfilter"; version="2.0.0"; sha256="1i55cdlm3f4qmykv4p5q62yiw4bhkq5nnzd7wfpzf1hbnjp94d87"; depends=[Rcpp RcppArmadillo]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; - kangar00 = derive2 { name="kangar00"; version="1.4"; sha256="0cgyxvgk6bxvh77y9vl0p024dya9ffr9fhmwlcxbysbr4p3kyiaj"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; + kangar00 = derive2 { name="kangar00"; version="1.4.1"; sha256="0c3wrzk7k322xj0yzladxdhh2j91qm7m0dyqqqfsshfkh8d22m48"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; kantorovich = derive2 { name="kantorovich"; version="3.0.1"; sha256="140fmbwaxn968n75my9336svgk7jw5zdq2ah1lcnl2m7qhxkvdxk"; depends=[CVXR gmp lpSolve rcdd Rglpk slam]; }; kaos = derive2 { name="kaos"; version="0.1.2"; sha256="0hzzb8ldydl4g3cl1579q8jv835q4cdmn8agafp6qqdhwi1xxw8k"; depends=[ggplot2 reshape2]; }; kaphom = derive2 { name="kaphom"; version="0.3"; sha256="081drgckirc0wv2viyhhnabrlfzi0nkpq6pffw2rxfjyxdsyvnwa"; depends=[]; }; kappaSize = derive2 { name="kappaSize"; version="1.2"; sha256="0lrcyj85zcl73m6bhbzl6rkprrfpfwmm4amyjkg1xsasy5zlwk67"; depends=[]; }; - kappalab = derive2 { name="kappalab"; version="0.4-7"; sha256="16bwbwwqmq2w7vy8p3wg0y80wfgc8q5l1ly1mqh51xi240z1qmq0"; depends=[kernlab lpSolve quadprog]; }; + kappalab = derive2 { name="kappalab"; version="0.4-8"; sha256="1ybr3nci04f9j91hwb5rv6ahwy89rdicxx2b2bl8rm70pj0vaq4r"; depends=[kernlab lpSolve quadprog]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.1"; sha256="0nvzvd8aq0sipcvn8agjjd2k1wykpgc99nrrk2cxrlvsjbpd2w52"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; - katex = derive2 { name="katex"; version="1.4.0"; sha256="0kgz2qck90h9kaxvy40nii03ib02z757bmw8sgacik82hmj0fxx8"; depends=[V8]; }; + katex = derive2 { name="katex"; version="1.4.1"; sha256="18cziglz8qy1v9gfcjiixq2d3l3na5p51zrxpy3x8asjiddq13d3"; depends=[V8]; }; kayadata = derive2 { name="kayadata"; version="1.2.0"; sha256="0dpfgqhhdfgkpp06y49c8rs6q0cnx9yvz6qya7jhwkanh8zj8pvq"; depends=[dplyr forcats ggplot2 magrittr purrr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcopula = derive2 { name="kcopula"; version="0.1.0"; sha256="07ddrq4lxp8i6n7c7ac7x9mdg9gfmlh7bv3n34qalwv0a6fa061w"; depends=[pracma]; }; @@ -11276,12 +11340,12 @@ in with self; { kernelPSI = derive2 { name="kernelPSI"; version="1.1.1"; sha256="1gnp3ixqmijy6xanlc4l8255biwxmlfyhd3y68arry9rzfjkmxpz"; depends=[CompQuadForm kernlab lmtest pracma Rcpp RcppArmadillo]; }; kernelPhil = derive2 { name="kernelPhil"; version="0.1"; sha256="0pzsknb0ibm3v0ibfaklb4g2mx7zrva4m29356cirwd29nmd8bqw"; depends=[benchmarkme directlabels dplyr ggplot2 gridExtra Hmisc pbapply reshape2 rgdal wordspace]; }; kernelboot = derive2 { name="kernelboot"; version="0.1.9"; sha256="1xqkkgy2b5x9ykwnk0pfhy7cmghzg5aivw6514cx9g0yvdprjmyy"; depends=[future future_apply parallelly Rcpp]; }; - kernelshap = derive2 { name="kernelshap"; version="0.3.0"; sha256="04y4z8zqafpy0a0191avx10rr7yvbdi748cgb86kabgzn5yzvhm6"; depends=[doRNG foreach MASS]; }; + kernelshap = derive2 { name="kernelshap"; version="0.3.1"; sha256="0y3cypdllmm9s4s3nca58962laxsd73zvy4iz9mbvgdpqwfxzk9h"; depends=[doRNG foreach MASS]; }; kernhaz = derive2 { name="kernhaz"; version="0.1.0"; sha256="1cxwjnfyhxfjdbhs21airycs704jic21pdpsbxsx37wkl11cxpai"; depends=[doParallel foreach GA rgl]; }; kernlab = derive2 { name="kernlab"; version="0.9-31"; sha256="12i7ffc1aacyy7bpjc0w60wwivn88wri8jz43h77irn5q5jwcnbk"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.5"; sha256="1kcj710q8jbc34g6fcv2nk07hpsb81mfx8hvivgxq8x58028gjzs"; depends=[MASS mvtnorm]; }; - kernstadapt = derive2 { name="kernstadapt"; version="0.0.1"; sha256="1b5gc2l1yf142pkw3bd5rnnvynwmnh90lqfpra9n4sbs9x9zmsci"; depends=[misc3d sparr spatstat_core spatstat_geom spatstat_random spatstat_utils]; }; + kernstadapt = derive2 { name="kernstadapt"; version="0.0.2"; sha256="0hbzc0xqlgs3kbblm247hkaic7s9a5slz22slh5dz9ddgfdy1z21"; depends=[misc3d sparr spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; kesernetwork = derive2 { name="kesernetwork"; version="0.1.0"; sha256="0q42zry3qgg38aas0cxy7lwpj9mj45crcbs353d1d1is0w1avh09"; depends=[config data_table dplyr DT ggplot2 golem htmltools plotly reactable rintrojs rlang shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyhelper shinyWidgets stringr visNetwork yaml]; }; keyATM = derive2 { name="keyATM"; version="0.4.1"; sha256="0p6miqzmfm79j6j2yvgw6mwi51ad41pg0dgqz7zn7picwpya3h2p"; depends=[dplyr fastmap future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen RcppProgress rlang stringr tibble tidyr]; }; keyToEnglish = derive2 { name="keyToEnglish"; version="0.2.1"; sha256="1wzn93gp1v6y8qh9kypydqadnf6fc7xzjili77b7j402hvb0a8zg"; depends=[jsonlite openssl stringr]; }; @@ -11294,6 +11358,7 @@ in with self; { kfa = derive2 { name="kfa"; version="0.2.1"; sha256="11v0w1j8vispzbrwvsjig83bhrzbdvv13li7ibzyi2n7d1bcrji2"; depends=[caret doParallel flextable foreach GPArotation knitr lavaan officer rmarkdown semPlot semTools simstandard]; }; kfda = derive2 { name="kfda"; version="1.0.0"; sha256="0861hzry55gj8ykdd8cwil1wb7234pkmipp4v1749fpmzggq1xgi"; depends=[kernlab MASS]; }; kfigr = derive2 { name="kfigr"; version="1.2.1"; sha256="0kys4j2n2n1v918v877798m34q431fpz0p0s6gxnfqnn26z2hy14"; depends=[knitr]; }; + kfino = derive2 { name="kfino"; version="1.0.0"; sha256="14gpc72nin96g2sqzbj7z9ca2gs3kjl2k0yg1zfdrv8fgjsn9s6i"; depends=[dplyr ggplot2]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; kgp = derive2 { name="kgp"; version="1.1.0"; sha256="0w5c507s7k7al0dc68iv8hjkz2r1zc5kzg7pm5nk7gq7gixpzpxp"; depends=[]; }; kgrams = derive2 { name="kgrams"; version="0.1.2"; sha256="0m1cw55lr0bl83p379wh3103d1rw9933lvf457kvxy56r1164l2h"; depends=[Rcpp RcppProgress Rdpack rlang]; }; @@ -11326,7 +11391,7 @@ in with self; { klsh = derive2 { name="klsh"; version="0.1.0"; sha256="1r354fd5da6mp7v3048ii09hnghhfwdg6pvmx2ib0cr88ql431sy"; depends=[blink plyr Rcpp SnowballC stringi]; }; klustR = derive2 { name="klustR"; version="0.1.0"; sha256="1g2q6h3cbm8v3gqz0f6v8bl5na9972k38d94czjfxmx4cv7wfgx8"; depends=[htmlwidgets jsonlite]; }; km_ci = derive2 { name="km.ci"; version="0.5-6"; sha256="18sc9vhbdgks8lhk2nfxkkayh8j4j227hl63fm5p04f7z4wm6wc1"; depends=[survival]; }; - kmc = derive2 { name="kmc"; version="0.2-4"; sha256="0y8bdgdxsz53fiqc2yr39agndxs4zxj7mmplj273map9k0slnnqk"; depends=[emplik Rcpp rootSolve]; }; + kmc = derive2 { name="kmc"; version="0.4-2"; sha256="0rnrwqsmxcmf4sjd9p2xz7w12lv58wmy2p349s0x4b34b5arf75d"; depends=[emplik Rcpp rootSolve]; }; kmed = derive2 { name="kmed"; version="0.4.2"; sha256="1pamwl28g6gc84x7sw9czqj8dpraq5pd3hdrf5m3yziwzkfxawnc"; depends=[ggplot2]; }; kmer = derive2 { name="kmer"; version="1.1.2"; sha256="0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"; depends=[openssl phylogram Rcpp]; }; kmi = derive2 { name="kmi"; version="0.5.5"; sha256="1j6fyi004fl97l569sn05pb7bmc2jx5hi0blfd896qi309s9qkd8"; depends=[mitools survival]; }; @@ -11337,7 +11402,7 @@ in with self; { kmscv = derive2 { name="kmscv"; version="0.1.0"; sha256="053608dks4q8171wrm6izh4pf0glbq6zpw30i9yq36f5azgy59sk"; depends=[dplyr parsnip purrr rsample tibble]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.40"; sha256="1g1mhnkyxd2sv6p1l6iph9dnmpbwxhah78xx4kq543ks6vzrb3wv"; depends=[evaluate highr stringr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.41"; sha256="1izv1m56ngc20wx4da9mmr5ll6ah14ka8dqn9i3pd7ah70lmya81"; depends=[evaluate highr stringr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; @@ -11365,7 +11430,7 @@ in with self; { kriging = derive2 { name="kriging"; version="1.2"; sha256="1s8cvc88g0wldr40hsv00145bym071bmp8klr0pbmvx0gfrqs8y8"; depends=[]; }; krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="2.0"; sha256="0zzhpdmmaiaqrg1xi9jg6lzrhzpav8wyrc8z38rf8x6kxmr2bx3m"; depends=[]; }; krm = derive2 { name="krm"; version="2022.10-17"; sha256="142scj7cgg7sv0g17mivpgzk3h8jczf40h1padixfgx3204fj4xa"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.13.5"; sha256="05bqrjkbx2kn5aax0hy3xd6pf7nxka9bm1sp8ll1cc2gf1nx1i6i"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; + ks = derive2 { name="ks"; version="1.14.0"; sha256="14a3pcxxcsfkqz5j6n2wlxkp0gsdp5mzdq7ipcjb65q2gdmwbf9d"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; kselection = derive2 { name="kselection"; version="0.2.1"; sha256="03ax8b63fkq4sfsb9zvh2hk4g9nmd8wh5lla26wb7lan4s197dz6"; depends=[]; }; ksharp = derive2 { name="ksharp"; version="0.1.0.1"; sha256="1dnkj838y8c1b53mlljhjqs3nd864i9xcqsv9n4fw28b4br9m570"; depends=[]; }; @@ -11376,7 +11441,7 @@ in with self; { kstMatrix = derive2 { name="kstMatrix"; version="0.1-4"; sha256="0iy4dnl07pbgsv3343gh0szsab1kls2m5cskha08dchz0vqwpwf6"; depends=[igraph]; }; ktaucenters = derive2 { name="ktaucenters"; version="0.1.0"; sha256="15ddjr4c90b5hc4977gk35zb2kswrcvai3xighy7qj6g9lgiszgf"; depends=[dbscan dplyr GSE MASS]; }; ktsolve = derive2 { name="ktsolve"; version="1.3"; sha256="0brxqb60m1lyqhsmds1c3c6cmbcxlzk2nwvi0fhkc8ziwzlfmd09"; depends=[BB nleqslv]; }; - ktweedie = derive2 { name="ktweedie"; version="1.0.0"; sha256="1yr9rh2r7280kc78vq722vzp0n9mgfrczrhcgmzbdkcfvq1ivgj9"; depends=[]; }; + ktweedie = derive2 { name="ktweedie"; version="1.0.1"; sha256="1q946qdsbs7cjzfl97npi1lyqwrwxc72w4wv602faj74x33n0hjp"; depends=[]; }; kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; kutils = derive2 { name="kutils"; version="1.70"; sha256="06jk66wbq3jmdf2jdhqns6r3yk36l2x7c907x977zv80sqxa1l37"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.2"; sha256="0lx7p2rgvcjgg99chcan0qb9hafx226sqvdb1g1xpkdwvzbyxci8"; depends=[Rcpp]; }; @@ -11405,7 +11470,7 @@ in with self; { lacrmr = derive2 { name="lacrmr"; version="1.0.5"; sha256="1lkn9hynqviz50h9k69wir4ajpymkdm1cfyg7hankjwnkypjp8rv"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; lactater = derive2 { name="lactater"; version="0.1.1"; sha256="1bxdbksm1706fk2d7qhfcx4ns4775rayxvh2lxw3rpq3xlyb0prj"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; - lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-3"; sha256="0rf74mxylg9j5apcxk40wyfbwgsjwh322kc6wxbqxm4rgscs6shw"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_random]; }; + lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-4"; sha256="0w0xlc4xxy7yzscxvk3ls9pv1vw5ddx1zvx02pzvm4gc9mrfz2qr"; depends=[RcppRoll spatstat spatstat_explore spatstat_geom spatstat_random]; }; laeken = derive2 { name="laeken"; version="0.5.2"; sha256="1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92"; depends=[boot MASS]; }; lagged = derive2 { name="lagged"; version="0.3.2"; sha256="1ss69jdmfz2al131mvhflaa4hcg71a0balpnc8vkf0f9svhkcs52"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-1"; sha256="1v3a580scxb1v5na3ab3ax9qlzbnay7nhm3ln5l8f9zgsqrg5lyh"; depends=[Formula partykit spatialreg]; }; @@ -11422,7 +11487,7 @@ in with self; { landsat = derive2 { name="landsat"; version="1.1.0"; sha256="15ymmwhkgw0lqyy2sryss3nsmkrjf4cc0bzlsr41vh5c2636srfd"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.4"; sha256="1qsm0h6lcg4a7s6g1am305rcxbrrf2hb6ypd29g5k7kj80fwg1rl"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.5"; sha256="1bk7zjmby5blpi9i51dz2ry6zjz4zm8frl61l27qw12dkhhyiyaj"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; landsepi = derive2 { name="landsepi"; version="1.2.2"; sha256="0pv2avabcs3kqygc6r3ggs368la0z0snfilp4q1jd46hww7ag9dj"; depends=[DBI deSolve doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; langevitour = derive2 { name="langevitour"; version="0.5"; sha256="0p7k159njgrfvw8adkzm6zma8b6ja2j9wwicrlywcqlbkwhbinbi"; depends=[assertthat htmlwidgets RANN]; }; @@ -11438,15 +11503,15 @@ in with self; { lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1.1"; sha256="1hc05irjwcw54hdrdbwsxfr5b0qq7dysvybzm04jyixqs5b2m8wx"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; - latentFactoR = derive2 { name="latentFactoR"; version="0.0.3"; sha256="0bm0avimfdhf9lgm4v5vrjbn7833klfp6166g6r8kmyvmn6gigqc"; depends=[BBmisc EGAnet fspe googledrive ineq mlr mvtnorm psych qgraph rstudioapi xgboost]; }; + latentFactoR = derive2 { name="latentFactoR"; version="0.0.4"; sha256="0kgzgympcfp6l4jysccrlxrbmqasz1v95wkmfsw8qgi7dzfsgywc"; depends=[BBmisc EGAnet fspe googledrive ineq Matrix mlr mvtnorm psych qgraph rstudioapi xgboost]; }; latentcor = derive2 { name="latentcor"; version="2.0.1"; sha256="0c8ygjdqxb9zs6b42ncqh5va80vxamdphja18x8dazygynmcgjr0"; depends=[doFuture doRNG fMultivar foreach future geometry ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.10.6"; sha256="0zkh75cvsiprxfbrzyqi72wvsljxzsifcd71kyrr2m761v3sqm16"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; - latex2exp = derive2 { name="latex2exp"; version="0.9.5"; sha256="153br3xflvnnxqhkhm1wgwb2664bw08alhslgdcgjdk73clafhla"; depends=[magrittr stringr]; }; + latex2exp = derive2 { name="latex2exp"; version="0.9.6"; sha256="1jp0l0hi5kv4yh28qg2yj2z5fj33gnfvdz2g2v4ibn516fj2d636"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.1.0"; sha256="021lhswy8nik2h1951h1affg8x5lchsa2amyx7fwrajp4bgq72yk"; depends=[fs rprojroot]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.7"; sha256="0n0hzr9jkg13kn56jcghcg4a6y8x0c3jffcvxv621azd9ldljgfl"; depends=[]; }; - latrend = derive2 { name="latrend"; version="1.4.3"; sha256="1qqh2igwag57mm42nazszvlp5d4wddgaxmv1mh35jvrv0qwhc75j"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; + latrend = derive2 { name="latrend"; version="1.5.0"; sha256="0dh1l1fax7s46z6nh4srqnyhj881rb6mh1cjmcd5cy6xmv95wps9"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; latte = derive2 { name="latte"; version="0.2.1"; sha256="1dcwxxj3yran5a3a8vvdfmx4ap69ql2jncxvmci4p4vcw4ki9j9g"; depends=[dplyr ggplot2 glue magrittr memoise mpoly stringr usethis]; }; lattice = derive2 { name="lattice"; version="0.20-45"; sha256="1b87fmyjzbg854vpi03my1p25n3d0bchhwsdm2frblxppn98sf12"; depends=[]; }; latticeDensity = derive2 { name="latticeDensity"; version="1.2.6"; sha256="0l9ypdpy09nnmanj2gvaxzj79s8d9iqwy6rv0rig5fwbqv1y6135"; depends=[sf sp spam spatialreg spatstat spatstat_geom spdep splancs]; }; @@ -11464,6 +11529,7 @@ in with self; { layer = derive2 { name="layer"; version="0.0.1"; sha256="0mmijkk4ppbmhlp6ah88a9v3iwdd9j6yw7ff8kk7p1iw63qkiyxi"; depends=[dplyr ggnewscale ggplot2 raster scico sf stars]; }; lazy = derive2 { name="lazy"; version="1.2-18"; sha256="02phj1l92dh5qmcl9i8scxgj4v21knbfrwwixq74bgyzwb51ni4r"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; + lazyNumbers = derive2 { name="lazyNumbers"; version="1.2.1"; sha256="0dc0j79cv7j3y04mpb2pp3qrjwhiv74rypl9yplwyr36z6fgl00l"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; }; lazyarray = derive2 { name="lazyarray"; version="1.1.0"; sha256="1bj1a8ab2479cl3d15h9f1fr1hh5d1p3sxpq8y84yzw0rrsxcldd"; depends=[fstcore R6 Rcpp yaml]; }; lazybar = derive2 { name="lazybar"; version="0.1.0"; sha256="1hv9ciznbxv7xnaijfjqisq3lx8nd4vkdkj9clxpdsspi3inlf53"; depends=[R6]; }; @@ -11530,14 +11596,13 @@ in with self; { learnPopGen = derive2 { name="learnPopGen"; version="1.0.4"; sha256="04wxina3n2bspxdp3d4bgqrwyxqxx46pfp8zgzr3rsj89ml8if9l"; depends=[gtools phytools]; }; learningr = derive2 { name="learningr"; version="0.29.1"; sha256="0z3rs7y9yd81f14sbk3dwq1ifr4vca2s3kl1gnkqlns3dycgyp08"; depends=[plyr]; }; learningtower = derive2 { name="learningtower"; version="1.0.0"; sha256="1q1k7wlklnxbb2yw3l96l7ha73vj3l3bnd4wlh2avmknqk2d8xcq"; depends=[dplyr tibble]; }; - learnr = derive2 { name="learnr"; version="0.11.1"; sha256="1p3943hv3ybmbcyfbxidd55dripi0570pf5l51hwz9r3635cx3zs"; depends=[checkmate curl digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; + learnr = derive2 { name="learnr"; version="0.11.2"; sha256="1w8lcghnqvmggfp90hdpcjflvnxyp5shfk48vq5s4kci8414dm6j"; depends=[checkmate curl digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="1.0.2"; sha256="13jd5j597pv3ainy6xx7ra402ymrh25hgfjzq0csq6d86n5fz3aj"; depends=[]; }; leastcostpath = derive2 { name="leastcostpath"; version="1.8.7"; sha256="0ivj15g3npwm0wpz6xaa8dj1am9diyvhyhnki8a3qfwsa7qv2n53"; depends=[gdistance gstat Matrix pbapply raster rgdal rgeos sp]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; lefko3 = derive2 { name="lefko3"; version="5.5.0"; sha256="0zgd4d9zhjwhwm1z18xjk6qmfbknnxqkbxz48ml6xgabgk3h263l"; depends=[BH glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM VGAM]; }; - legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; }; legion = derive2 { name="legion"; version="0.1.1"; sha256="11gh281hf3nqzd3lbiqdp7y2qbpb933p92ix92hyg3rqai1fd0hb"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; @@ -11547,14 +11612,14 @@ in with self; { leidenbase = derive2 { name="leidenbase"; version="0.1.12"; sha256="15qkvm3pbxlhf8c8732m7a2jfw044ks3gd3s6jg50cfmnn7h7rzq"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; lemna = derive2 { name="lemna"; version="1.0.0"; sha256="1dm6kcbjkh12c7aa0kmygwj5vv61gmpmh06j0jsg0h7ys8hrdhjq"; depends=[deSolve ggplot2 gridExtra]; }; - lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; + lemon = derive2 { name="lemon"; version="0.4.6"; sha256="0v1kbyk64yzsk92h6yq03kp9alc9632qprznsws61r8firiskim5"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; leprechaun = derive2 { name="leprechaun"; version="1.0.0"; sha256="1y30s519502bqabzsf1njf3zzqlbmr4sbmsm57ci1r6dv4miijkh"; depends=[cli fs jsonlite roxygen2 usethis]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; less = derive2 { name="less"; version="0.1.0"; sha256="1pgixa04rjngfg0yhxyg4qhd6g0pj8zyb3q8mfa3fjxzpywdy70a"; depends=[caret e1071 FNN MLmetrics pracma R6 randomForest RANN rpart wordspace]; }; - lessR = derive2 { name="lessR"; version="4.2.3"; sha256="0yirj4ai20ydnjr5xx7dxk4yxfjdimwgbkizx0jnr39ypq08314s"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.2.4"; sha256="1lcylsb70i7wyaqkwgwq8k62p265aa7azfq1a8n90lghjadckcck"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11568,9 +11633,10 @@ in with self; { lfe = derive2 { name="lfe"; version="2.8-8"; sha256="0wdbhnyzzvpkjyjsxidkcwpssij3k476lhlfdkk2xwhnz8l2khhg"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="2.2.0"; sha256="02kd7fz12v6xl1f3lv7kkxccln4fm8dmvbn7m9prbiawrbmy16dx"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfmm = derive2 { name="lfmm"; version="1.1"; sha256="1v2sb2qghwcln3b5rpzhakg562izlzyxzvz49nz74y0rh2gx7g9i"; depends=[foreach ggplot2 knitr MASS purrr Rcpp RcppEigen readr rmarkdown RSpectra]; }; + lfstat = derive2 { name="lfstat"; version="0.9.12"; sha256="0hl5b78llydcphbrg04fi5b4v7p6xxwlcwpl70m2537gra52wvdr"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr scales xts zoo]; }; lg = derive2 { name="lg"; version="0.4.1"; sha256="1srlklq6hkb4yd3lbbazswj866i3wzk2524hhj1v45yr7d5qhxv0"; depends=[ggplot2 ks localgauss logspline mvtnorm np tseries]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; - lgcp = derive2 { name="lgcp"; version="1.8"; sha256="1dw7zvl9mmwdx0kjrbfiq4c9x8ydg8kyf426xjpnmzf2jawmlqb0"; depends=[fields iterators maptools Matrix ncdf4 raster rgeos rpanel sp spatstat_core spatstat_geom spatstat_utils]; }; + lgcp = derive2 { name="lgcp"; version="1.8-2"; sha256="0q7w95gpvdzlli60dgpixl0rn05f4707xwyw215dsrc1z8znyk73"; depends=[fields iterators maptools Matrix ncdf4 raster rgeos rpanel sp spatstat_explore spatstat_geom spatstat_utils]; }; lglasso = derive2 { name="lglasso"; version="0.1.0"; sha256="0qkmlr7gfbw9m403676p4ip4hn2v2ll1jcwj5vhshcyb5whsr866"; depends=[glasso]; }; lgpr = derive2 { name="lgpr"; version="1.1.5"; sha256="03wf6n3agls48r1a82aw6sywj3hzs0pza29l3p68nlqlkf9amnnw"; depends=[bayesplot BH ggplot2 gridExtra MASS Rcpp RcppEigen RcppParallel RCurl rstan rstantools StanHeaders]; }; lgr = derive2 { name="lgr"; version="0.4.4"; sha256="09x1vw6cnc1c0p0ylcz1q1vcxyaf1kljhh7ni3gl5jm19zii2h4c"; depends=[R6]; }; @@ -11581,13 +11647,12 @@ in with self; { lhs = derive2 { name="lhs"; version="1.1.5"; sha256="0fb3bc3s5pbwg92qkjbg7v8ah36wm6qs05vf098hwjakr7f6yg3s"; depends=[Rcpp]; }; liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; }; liayson = derive2 { name="liayson"; version="1.0.5"; sha256="1h3xyy40zvmllqlskgnmm755m0xds66hgpgk48zc9i2i3qj6165j"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; - libbib = derive2 { name="libbib"; version="1.6.3"; sha256="04skv3l8f48wbzm304l8fzk354wia102mrlbfysklszmxzy9vidx"; depends=[curl data_table pbapply stringr xml2]; }; + libbib = derive2 { name="libbib"; version="1.6.4"; sha256="1jcdsvg5xgc7yzdc00k2brsiviyzflsdgiyk77icw08bwlbxh9mk"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-9"; sha256="1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d"; depends=[mvtnorm]; }; libgeos = derive2 { name="libgeos"; version="3.11.0-2"; sha256="0plm20y4c2x1qwjq3ds8fm3fjgv1rb2apvgyvrmvnwpsqhizbfzy"; depends=[]; }; libr = derive2 { name="libr"; version="1.2.8"; sha256="0kqjr327hck9p763wzzvh5skimn4larblfyhfqqyc2323z2g5d11"; depends=[common crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; - libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; lidR = derive2 { name="lidR"; version="4.0.1"; sha256="0bfnnshnc3wcz8zghr71srfdhd32wmmwadg5qw85ydvz7bpsgv8i"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="4.0.3"; sha256="076gf94kf1m7nxmwacd3fqqq09qn6lrpzm0535mmx0cb0cwy8vga"; depends=[car gvlma imager leaps lidR reldist sf terra]; }; @@ -11631,9 +11696,9 @@ in with self; { lineup = derive2 { name="lineup"; version="0.42"; sha256="1k6l3vl9g6cz3jl1fz6r1dm3lfpmis6yylra69c3s8l8l4fz0gzy"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; lineupjs = derive2 { name="lineupjs"; version="4.6.0"; sha256="198a87hhn1f77ix3mrv8mi04qxlv392aw1cg852h8s6sr2ayxqgl"; depends=[htmlwidgets]; }; - lingglosses = derive2 { name="lingglosses"; version="0.0.4"; sha256="19nsdqvxj8xa0xaf5qbmwxs6fakax9invg36fc1npscf48d3fjl7"; depends=[htmltools kableExtra knitr rmarkdown]; }; + lingglosses = derive2 { name="lingglosses"; version="0.0.5"; sha256="0rwilnqv1lzmw61y1prjp3mvl4q61jr3pwkifq2mmw5vj307iciz"; depends=[htmltools kableExtra knitr rmarkdown]; }; lingmatch = derive2 { name="lingmatch"; version="1.0.4"; sha256="1n6d3xx2ilkp37ia6s578k8rlqq4faxd8k41xjgy866590jjjrmw"; depends=[Matrix Rcpp RcppParallel]; }; - lingtypology = derive2 { name="lingtypology"; version="1.1.9"; sha256="09z3fraycgzykwqiaidsnzgcq8zgl0msa40nz0gmxirrksw8dcq0"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.1.10"; sha256="0ir90f0zkafdmhmnsa8i24xhzn7bddfa7f2nfigpwxpll6q22113"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; link2GI = derive2 { name="link2GI"; version="0.5-0"; sha256="0rpanjp6nwrffw02qsd3dq7x5f9pa4cq7cbny4bwiig4cdf7sgrk"; depends=[devtools R_utils raster roxygen2 sf stringr]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; @@ -11642,7 +11707,7 @@ in with self; { linkspotter = derive2 { name="linkspotter"; version="1.3.0"; sha256="0fwkbz84vq0v5n5xgv1n99ph7qdz08hjj46ac4q293zarg1xk328"; depends=[dplyr energy ggplot2 infotheo mclust minerva pbapply rAmCharts shiny shinybusy tidyr visNetwork]; }; linl = derive2 { name="linl"; version="0.0.4"; sha256="1wq0wm3k12sfvg0nzdsdxb4qc79kny7qvckxplfgaj6y62vcjxxl"; depends=[knitr rmarkdown]; }; linne = derive2 { name="linne"; version="0.0.2"; sha256="19x13hf3skvxihlpa8wy05vlc94yv7nfs8b1pr8br76wk1xdkjvx"; depends=[cli magrittr purrr R6 rlang shiny]; }; - linpk = derive2 { name="linpk"; version="1.1.1"; sha256="0bii49b19kf50gbnv2am7kwy2gb9gkxv8vplcwlmm6k9b4gw9pjb"; depends=[mvtnorm]; }; + linpk = derive2 { name="linpk"; version="1.1.2"; sha256="0i87sfh01dl3xqs5vy3ha2prg952zpiq8fbl2amaiamg1qwl2y34"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-4"; sha256="1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1"; depends=[lpSolve]; }; lintools = derive2 { name="lintools"; version="0.1.6"; sha256="1hh1wywa26a9aa2xrmaz2w95wgk8x7cj0b9731yfq0bzzphh6xdl"; depends=[]; }; lintr = derive2 { name="lintr"; version="3.0.2"; sha256="1j9l5lsa88hl5b3lw1789868pm0m2sbahyqayj9213d7zspp0slz"; depends=[backports codetools crayon cyclocomp digest glue jsonlite knitr rex xml2 xmlparsedata]; }; @@ -11658,7 +11723,7 @@ in with self; { listarrays = derive2 { name="listarrays"; version="0.3.1"; sha256="0nfpqywq9pl9yj566y0jw0h89g0ppsc614538ns1jc3l5r2myils"; depends=[]; }; listcomp = derive2 { name="listcomp"; version="0.4.1"; sha256="0h3wmlm3y3vr21x4ik785ring57z5cjhlwvsljh06m5m3fkv8nxr"; depends=[rlang]; }; listcompr = derive2 { name="listcompr"; version="0.4.0"; sha256="1pmk56wz6yl1qixfk9ci1p96z7qwz65xyb6k5k46l5nbwal6ik4a"; depends=[]; }; - listdown = derive2 { name="listdown"; version="0.5.2"; sha256="0h36m1m598zrr37fsam51b54aqs0mi8qfj5pvhkl77n9c67y347f"; depends=[checkmate fs rmarkdown tibble yaml]; }; + listdown = derive2 { name="listdown"; version="0.5.4"; sha256="1pb738s1pm86k51yaffdzlkyhgsxs383mrlvpsqp8a7ii4nmbg3j"; depends=[checkmate fs rmarkdown tibble yaml]; }; listenv = derive2 { name="listenv"; version="0.8.0"; sha256="0ps8bk7zlhbviawrw7vw25skjq81hkk3ijyi6g74dmfqy8zsyapx"; depends=[]; }; listr = derive2 { name="listr"; version="0.1.0"; sha256="1k8djk2nvqyyl9ffmfr4djciryha9x22icq972k38990nx2w0al2"; depends=[rlang tidyselect]; }; listviewer = derive2 { name="listviewer"; version="3.0.0"; sha256="0zirxdj58h43062f68h6nqcgmpnvdglxx3kjbs4i4k0z9wvqhx8r"; depends=[htmltools htmlwidgets shiny]; }; @@ -11677,7 +11742,7 @@ in with self; { llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; llogistic = derive2 { name="llogistic"; version="1.0.3"; sha256="0wfszgcdi0i3lsm7gsih6a411v353c2gpbg3f06n6c2n35939lsl"; depends=[]; }; lm_beta = derive2 { name="lm.beta"; version="1.6-2"; sha256="01ys268xx1bhirr6axbc3l6jqnks7d9y1wyqy66bf0fgyz6z4ppb"; depends=[]; }; - lm_br = derive2 { name="lm.br"; version="2.9.5"; sha256="0q9s2drfmbq78pbkk466nqli5wwqrgyszgp0g7f2hmpazhj89y3g"; depends=[Rcpp]; }; + lm_br = derive2 { name="lm.br"; version="2.9.6"; sha256="1gy6j7fk8maa98c0srx03jsjrhj8gcxq32gszxh95zl268hnyspy"; depends=[Rcpp]; }; lmDiallel = derive2 { name="lmDiallel"; version="0.9.5"; sha256="1hgd4j5f23b4am8d8ljnvks9jzcy0z592np0j2kfjpiwca1zl31w"; depends=[multcomp plyr sommer]; }; lmForc = derive2 { name="lmForc"; version="0.1.0"; sha256="0v1r7yv0i3sc6cii78d9f9d3a6rvpvwrs6k3byi825r497xjgw3j"; depends=[]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; @@ -11686,7 +11751,7 @@ in with self; { lmap = derive2 { name="lmap"; version="0.1.1"; sha256="0d9blb8hgq2b3klczml74sgpkzbg8v4kn5mzvmip50s1bkk0brfz"; depends=[dplyr ggforce ggplot2 ggrepel nnet tidyverse]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; - lme4 = derive2 { name="lme4"; version="1.1-30"; sha256="03rhg6cnsvdk06a1yxkivfvfwlx9934nd9q6jnp0bzscnv2dzazx"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-31"; sha256="1zgdfbzc8lv4rrsjdacagwa693ij2bmn6xkc1bnfbv1z7pix3zss"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeInfo = derive2 { name="lmeInfo"; version="0.3.0"; sha256="1y1793h5wd6xqj46bkr0xw47287bczhs4kiv1v2cbi70nr628w0d"; depends=[nlme]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-12"; sha256="140l95c6yys2rdpyh7clqx4x4qfd4w36hpz6jkb2ygbh90ikzi2r"; depends=[nlme]; }; lmerTest = derive2 { name="lmerTest"; version="3.1-3"; sha256="1zd8gqjkazhxgpnnr484xwsq30p62fq8592nzyc171zjyplpbaim"; depends=[ggplot2 lme4 MASS numDeriv]; }; @@ -11699,6 +11764,7 @@ in with self; { lmmpar = derive2 { name="lmmpar"; version="0.1.0"; sha256="1l3zjmlfjfn2wv4yayqzv6qrwaxk2sgx3hjx371b5fs54zspdj20"; depends=[bigmemory doParallel MASS matrixcalc mnormt plyr]; }; lmodel2 = derive2 { name="lmodel2"; version="1.7-3"; sha256="1fiin2nkffbihz1s8ixmw9lgf8mn3j9krr8iiflizk10mdv54hnb"; depends=[]; }; lmom = derive2 { name="lmom"; version="2.9"; sha256="145va4dhl767mywk36xcmqilm21sfkqhcqi0s07qgq3k39sn4gin"; depends=[]; }; + lmomPi = derive2 { name="lmomPi"; version="0.6.2"; sha256="0k1clrl3pbbnjaz1yp5syzdvy64zz1q1nd3xsbacwrl0q865xs3n"; depends=[lmom stringr]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.4"; sha256="10mc411b19r7jxixkdy85s8b6r7q1gf3073442cszhymyrfdmvb7"; depends=[lmom]; }; lmomco = derive2 { name="lmomco"; version="2.4.7"; sha256="1hn74zj7c165qsq1icgx9qvdmgxxh4hhn062k7xnvm5yh94g4nvz"; depends=[goftest Lmoments MASS]; }; lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; @@ -11727,17 +11793,18 @@ in with self; { locationgamer = derive2 { name="locationgamer"; version="0.1.0"; sha256="0y99m003s177x57m4ynxd8jd2xzl5zb4bj7jnbc04h22ffdl6m6f"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; locfit = derive2 { name="locfit"; version="1.5-9.6"; sha256="0xilf6gp3m8xla2fvxr491j31pvim707mnhswvm9yxnb0d09xs0y"; depends=[lattice]; }; - locits = derive2 { name="locits"; version="1.7.5"; sha256="0il7wf3373kcziy6bia3w57mm7i5wcqbzarzr1v9d8r5zw7h96p1"; depends=[igraph wavethresh]; }; - locpol = derive2 { name="locpol"; version="0.7-0"; sha256="1p915n0l09kbwkly627074jslxl01yssp1rf0c7sygvsw6sgy5lm"; depends=[]; }; + locits = derive2 { name="locits"; version="1.7.6"; sha256="15jalcaqz5yymrhlzlsr3xmy34dspnv08lmychqjps8vv0irpr3j"; depends=[igraph wavethresh]; }; + locpol = derive2 { name="locpol"; version="0.8.0"; sha256="1bip9x45kdnwc14rvk3ckzfbs32yc2wiid1ypmbbin4mk7364zxk"; depends=[]; }; locpolExpectile = derive2 { name="locpolExpectile"; version="0.1.1"; sha256="1phwcnbk1vmdk3qmfx2nd6crplly2lb8gb57yl67ky3c4sryh358"; depends=[expectreg lestat locpol matrixcalc quantreg]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; loder = derive2 { name="loder"; version="0.2.0"; sha256="0m6g8c25dmq0wgpy8y6cbggymxdvqwb6lp2yzs5bgpq183512spb"; depends=[]; }; lodi = derive2 { name="lodi"; version="0.9.2"; sha256="16xqcza87gsqi6kzx0bdv3w9zyvvppjd20rq08lc8vb75nlkx1yb"; depends=[rlang]; }; lodr = derive2 { name="lodr"; version="1.0"; sha256="0bmdw489dv1069krnx9yi0bcgx1vx4ymc6s4pix4shha5c5fbiz4"; depends=[Rcpp RcppArmadillo Rdpack]; }; loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; + loedata = derive2 { name="loedata"; version="1.0.1"; sha256="01w0f83n1jzchw12w1wg18lq6idlp9ywr52nipg2l7pn9aa30gvv"; depends=[]; }; loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; log = derive2 { name="log"; version="1.1.1"; sha256="1vzssrg2qqxd27b9d36v3mmkhgkx8n724ql9yhl5p8dy28zgsdxd"; depends=[cli crayon R6]; }; - log4r = derive2 { name="log4r"; version="0.4.2"; sha256="0d7yxp3h7iy0miaprgp16n5vbxk0mvy8aci8r0mmml6wcl2h4jlj"; depends=[]; }; + log4r = derive2 { name="log4r"; version="0.4.3"; sha256="0k4hyln1mqxkp8y383mgs0ds0h05hs7d2mpicfnz7n586nfx9qyz"; depends=[]; }; logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; logNormReg = derive2 { name="logNormReg"; version="0.5-0"; sha256="0lv5m6yz1v8pi1svw9qh3gkq3r0lp13qhx3p6g6yvzqwd0px0pip"; depends=[]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; @@ -11764,12 +11831,12 @@ in with self; { lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; logr = derive2 { name="logr"; version="1.3.3"; sha256="08b32wddzs7jwhbkfvm2nz6s096kk31afv78hmdippykmzws37fj"; depends=[this_path withr]; }; logrx = derive2 { name="logrx"; version="0.1.1"; sha256="02xkx9sfis4rn3f9hdaj5idm104r0mpp7rx3spy294ylwv7bdv2a"; depends=[dplyr magrittr miniUI purrr rlang rstudioapi sessioninfo shiny stringi stringr tibble tidyr waiter]; }; - logspline = derive2 { name="logspline"; version="2.1.17"; sha256="05c8l22zcvb086909h9vw7icphww703vkcxp2h881y4n1232pdq3"; depends=[]; }; + logspline = derive2 { name="logspline"; version="2.1.19"; sha256="1527cnnn5qdjp8gr4yls0jp0aachjz5s2v79vs79vrfyvxp9w89p"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-9"; sha256="1fms79bb4y6ryzmxhpc544zh52xgd879gpcigc24bjhd7whl9nry"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolog = derive2 { name="lolog"; version="1.3"; sha256="0lfb3d7rxssvzd70gixpmr8r8hcmxplg5yy181hdrvjsdc8w8jn4"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; lomb = derive2 { name="lomb"; version="2.1.0"; sha256="1hgf28bs5g07v7j05qxahs0q3j683401ssqk1r256pvk8x9j445l"; depends=[ggplot2 gridExtra plotly pracma]; }; - long2lstmarray = derive2 { name="long2lstmarray"; version="0.0.1"; sha256="1ms47aa5r8cr2w69nv11qjpzy4sh6acys8kq2n548jsdx4z1sc26"; depends=[abind dplyr]; }; + long2lstmarray = derive2 { name="long2lstmarray"; version="0.2.0"; sha256="1d0w5qqqq3jak72ci7p12rcs4hjwmvwlaf47pibc6y9lax609kxw"; depends=[abind dplyr]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; @@ -11787,7 +11854,7 @@ in with self; { lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; loon = derive2 { name="loon"; version="1.4.0"; sha256="0sgvzq06qk7id7h1hr0pa8hc02zp4r25ys3ifv7q9119c618q9an"; depends=[gridExtra]; }; loon_data = derive2 { name="loon.data"; version="0.1.3"; sha256="0sdld3yggjadykqaljf0p4cymy2c47yaxjphc6jwyragzpv4awzw"; depends=[]; }; - loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.2"; sha256="1cla27s6dd0mz2sann42waia800a7s42wchs7zb97qwjfl2gpmw5"; depends=[ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; + loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.3"; sha256="15by2z3iy5p3frhb1y8rg17gbdds45b01qpcya210hia52b9vdlq"; depends=[cli ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.3"; sha256="1bv8a4rrrlf80r9pidjxaaql4rrm6gz13pjz1mii97q9s3xjn0id"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; @@ -11802,10 +11869,10 @@ in with self; { lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.9"; sha256="04bqa719za6hbbip695190zcq6nkwqmm0qjfw8gpfkqpy7ryqlkv"; depends=[]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; lpcde = derive2 { name="lpcde"; version="0.1.0"; sha256="0lr7g01ld9cq6xr5w1svlrrylba0kas0b2rzdmdnwf6jsf8296cz"; depends=[combinat ggplot2 MASS Matrix mvtnorm purrr Rcpp RcppArmadillo]; }; - lpdensity = derive2 { name="lpdensity"; version="2.3.1"; sha256="13yqllfffhkzsy8h8kisllw467vaajg4dk51sc6lmc63hs6v7y4r"; depends=[ggplot2 MASS]; }; + lpdensity = derive2 { name="lpdensity"; version="2.3.2"; sha256="1pyvqhxxvcd3l0wr0a3a39pxfbg7d66qdhynfb4jchd5sqj2p6a5"; depends=[ggplot2 MASS]; }; lphom = derive2 { name="lphom"; version="0.3.1-1"; sha256="18scyg2rd30haawmnlxrkxvg6d8w9qqs7vj9cxvkg9flalsd8isg"; depends=[lpSolve]; }; lpint = derive2 { name="lpint"; version="2.1"; sha256="0xakxmzgxlg3pmc978sgfnk0wgpbzmm5lbn1wqkz792j0g97jr31"; depends=[]; }; - lpirfs = derive2 { name="lpirfs"; version="0.2.1"; sha256="13wqf9c5pf1dgingy02y1cx2iw3grx7vkqiqhw2dc78q26mpwmlq"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; + lpirfs = derive2 { name="lpirfs"; version="0.2.2"; sha256="01cvdznz1pyvxj0vixwq9av4vys23mrzzbjd8vnngsm6rmrwci2z"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; lpl = derive2 { name="lpl"; version="0.11"; sha256="11w2cr5n72p4wds5dm039rdinhvxjfqvrmisksfpf47jddjxhm42"; depends=[MASS survival]; }; lpme = derive2 { name="lpme"; version="1.1.3"; sha256="1ch11cwjci98m7952p9wdsh9fj5y1mjya6ayq0q4wmbm824qfpzb"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; @@ -11824,7 +11891,7 @@ in with self; { lsei = derive2 { name="lsei"; version="1.3-0"; sha256="1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2"; depends=[]; }; lsirm12pl = derive2 { name="lsirm12pl"; version="1.1.0"; sha256="193l17z9saqxxyswgy9schrilgr9x2idc900vkblsfhy0nl71chr"; depends=[coda dplyr ggplot2 GPArotation MCMCpack pROC Rcpp RcppArmadillo rlang]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; - lslx = derive2 { name="lslx"; version="0.6.10"; sha256="189gpp1ikcp5ld4avipwckdz997v1cx2zas5a8b54nv246kb5hmd"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; + lslx = derive2 { name="lslx"; version="0.6.11"; sha256="1mjkz3zgcajrrkq1igqq0a1rpxwvv41ankr5mj6mcjqpg4ggng1p"; depends=[ggplot2 R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.2.1.2"; sha256="1sp6c3r3g0q9lynzpcjvfwrp7xml11q66cqcisjvidm79vxjgi5v"; depends=[dplyr ggplot2]; }; lsmeans = derive2 { name="lsmeans"; version="2.30-0"; sha256="1z35dzfgib0fk201gzjhgmnryhl3mkz50gz8g6nfv4mj9kzc5x5f"; depends=[emmeans]; }; lspartition = derive2 { name="lspartition"; version="0.4"; sha256="1n0pag5l4kx211dl5z9xbqijp7l04jcm0i6jgvkk2b0x9v32q4r5"; depends=[combinat dplyr ggplot2 MASS matrixStats mgcv pracma]; }; @@ -11834,6 +11901,7 @@ in with self; { lsr = derive2 { name="lsr"; version="0.5.2"; sha256="00mbnla74k7xcs8640chkcjydi945dahs2d6h1lv89nsrm8hpzx9"; depends=[]; }; lss2 = derive2 { name="lss2"; version="1.1"; sha256="1rkv26zq36zyh891xkkllxphwplljmzpy15g619x1w4qvsajyyg8"; depends=[quantreg]; }; ltable = derive2 { name="ltable"; version="2.0.2"; sha256="05sjyzq3s1bldndpwbknl9md3vzf664wvpkckwxnrswl9i9av6fn"; depends=[clipr]; }; + lterpalettefinder = derive2 { name="lterpalettefinder"; version="1.0.0"; sha256="1rrivlzrk2fzcnhyy3sv0n76v7lv4c1nwiwbr9f6rinqwx02k2dd"; depends=[dplyr ggplot2 jpeg magick magrittr png tidyr tiff]; }; ltm = derive2 { name="ltm"; version="1.2-0"; sha256="0vhgbk6j0z3limsrbjkjkpfn2whiaij5j4jf1gg66mjs9dlylap1"; depends=[MASS msm polycor]; }; ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; ltmle = derive2 { name="ltmle"; version="1.2-0"; sha256="1mqrf77319cjs3q48iigrkjc3rjibz7qyij49a7l0nim3c1hd0b0"; depends=[Matrix matrixStats speedglm]; }; @@ -11841,7 +11909,7 @@ in with self; { ltsk = derive2 { name="ltsk"; version="1.0.9"; sha256="1zrcfhsm4599dj8dywzgpqabcc4sbfm7d99lxxmhqagqiqwamqyc"; depends=[]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.3"; sha256="0f2ycgjdw9z9m730wh3k362aq71mwmxhnsxhcjxhj8c4lknr50br"; depends=[]; }; - lubridate = derive2 { name="lubridate"; version="1.8.0"; sha256="199b00cql07gf3rf4hh5ba34amnk0ai40zhx73dq1mpkn7ynxml7"; depends=[cpp11 generics]; }; + lubridate = derive2 { name="lubridate"; version="1.9.0"; sha256="0flh3arja7al9xznj5jvicadvq1kb2s63zyg63wlx2bii8gh8dmr"; depends=[generics timechange]; }; luca = derive2 { name="luca"; version="1.0-6"; sha256="0zrxrwpk7iblpysd4fbh50s5bmvd5l1bzbd8rdyk06wby6bcs1rk"; depends=[genetics survival]; }; lucas = derive2 { name="lucas"; version="1.0"; sha256="1ws35f2pq2y7nnik40nj4qpz1d499gfc5isr1409pwy6r5knb78q"; depends=[DBI plyr rpostgis RPostgreSQL]; }; lucid = derive2 { name="lucid"; version="1.8"; sha256="1dhbyr0l7cp5r0r7xdgqqxlix5hhk0v4v0zghd904dvfyaz2zdwi"; depends=[nlme]; }; @@ -11853,15 +11921,14 @@ in with self; { lutz = derive2 { name="lutz"; version="0.3.1"; sha256="15b8gzwykxyqycjba319jpsbny07j8ny9y4lnrg8mcf488ycz57y"; depends=[lubridate Rcpp]; }; luz = derive2 { name="luz"; version="0.3.1"; sha256="1wm8w7x9232ns6b7jvzw3isqrwbq0d6w9an21nna05s39nzyvniq"; depends=[cli coro ellipsis fs generics glue magrittr prettyunits progress purrr R6 rlang torch zeallot]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; - lvec = derive2 { name="lvec"; version="0.2.4"; sha256="0f8bn1p3i2myz8nbw2iw48wm1v81f34zk0aqiqbvhsbpcxba2gdf"; depends=[BH Rcpp]; }; + lvec = derive2 { name="lvec"; version="0.2.5"; sha256="12q486xvnfyga15yx8av56sflahcni2wm09rx8abj8yzkjgfdiva"; depends=[BH Rcpp]; }; lvm4net = derive2 { name="lvm4net"; version="0.3"; sha256="1iq93mrdhymdixnk7y7rkibm3cqljl4y9qkjq4mzkcwcp4960y5q"; depends=[corpcor ellipse ergm glmmML igraph MASS mvtnorm network]; }; lvmcomp = derive2 { name="lvmcomp"; version="1.2"; sha256="08hs97bdz4n0bdhvqqq5xywfy140s69c750rn38criq4cw4gm3z7"; depends=[coda Rcpp RcppArmadillo]; }; lvmisc = derive2 { name="lvmisc"; version="0.1.1"; sha256="06ry1azfpqdh1hblhnc47n9265dkzhm96rajl8y7xnvqmv6ad8jj"; depends=[cowplot dplyr ggplot2 glue purrr rlang rsample tibble tidyselect vctrs]; }; lvnet = derive2 { name="lvnet"; version="0.3.5"; sha256="1wqqxavs2s0hmlifyaa1jrlc8hj4z72fkgjckkmh9m2r4jp9zy0g"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.1"; sha256="0zby40866kvqxdz4hk6r0f4rfh7rzmy0n899cjjg5rqzcap7s5di"; depends=[ggplot2 RColorBrewer tibble]; }; - lwgeom = derive2 { name="lwgeom"; version="0.2-9"; sha256="1a0s15rliqd4zr6pyj76xln41f64s9yfwblk074342zvvbps5ck9"; depends=[Rcpp sf units]; }; + lwgeom = derive2 { name="lwgeom"; version="0.2-10"; sha256="1gdvp2q4mzlg1kpjqxkiqxw1r5c4n5pxwvhdbzp89a3gyyjgh7zf"; depends=[Rcpp sf units]; }; lwqs = derive2 { name="lwqs"; version="0.5.0"; sha256="11hkz3b3sgm6v30gwaq463klljjf6c4qx26a5ccc1wl6r439gxqp"; depends=[data_table gamm4 ggplot2 gridExtra gWQS plyr]; }; - lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; m2r = derive2 { name="m2r"; version="1.0.2"; sha256="0vwvpalap4z5x2004c92n0ka7i4l64ry5n8pmxs4vjpd8fyx91gc"; depends=[gmp memoise mpoly Rcpp stringr usethis]; }; m5 = derive2 { name="m5"; version="0.1.1"; sha256="0cw9b31j564qc5s1b37r1p425p4gndlzgwy34cn0m2c65jwiyf6h"; depends=[data_table lubridate stringi]; }; @@ -11870,7 +11937,7 @@ in with self; { mBvs = derive2 { name="mBvs"; version="1.5"; sha256="1fmi4ap55jl06swivspk24acwf5n4wd9agiw330z15x427j579s3"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; - mFD = derive2 { name="mFD"; version="1.0.1"; sha256="1hq3981xar786bhg4xdvp17v4nds0fd1pgj7pcn8zyykr3r44g84"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; + mFD = derive2 { name="mFD"; version="1.0.3"; sha256="1kxiyvq7cs2hjprnj7snrdm5i2cnd00l1k59v18612d3z78b0nih"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; mFDP = derive2 { name="mFDP"; version="0.1.0"; sha256="0mvqg3qpv1zcj5lsk36dw4qs75i66cmv4qazpmsilhfh0v46p2dx"; depends=[]; }; mFLICA = derive2 { name="mFLICA"; version="0.1.5"; sha256="0znjp95ifwqpqwrnlcb77r1cdwpvbpql6ggnck018xddc8x40hzv"; depends=[dtw ggplot2]; }; mFilter = derive2 { name="mFilter"; version="0.1-5"; sha256="0anc93mciq8j64knd0i38sfgv10w1gd375wnfzn1fq8sj3lby7kb"; depends=[]; }; @@ -11891,6 +11958,7 @@ in with self; { macc = derive2 { name="macc"; version="1.0.1"; sha256="1qj4mlikbqrxa6m46527xmxdbk7b3l95z6jdgpmi0ifywjiv52a4"; depends=[car lme4 MASS nlme optimx]; }; macleish = derive2 { name="macleish"; version="0.3.9"; sha256="06r97fsasjj7qdm4p8yhvi2hfs1qy35xs0ay9i3bv5k09z5zfia7"; depends=[dplyr etl lubridate phenocamr readr rvest sf stringr xml2]; }; maclogp = derive2 { name="maclogp"; version="0.1.1"; sha256="1fbwv4j4mb7zkyc5vspq7k17pwr49dbvqkssda54ggcf1nbqykmb"; depends=[BMA plot_matrix rlist]; }; + macroBiome = derive2 { name="macroBiome"; version="0.1.0"; sha256="04fv6vrc4lmz23y0g1yzrgf0r4rm8k1v6vnizb1h0g4xyjw4ij80"; depends=[palinsol raster rworldmap rworldxtra sp strex]; }; macrocol = derive2 { name="macrocol"; version="0.1.0"; sha256="1qz5hsxg4ga4blbrakn4bia2l4lh6h5kh4ix7vnm7rl2f7yk4r5a"; depends=[httr lubridate openxlsx R_utils readxl]; }; mactivate = derive2 { name="mactivate"; version="0.6.6"; sha256="0qqhniq0wdhazhfiiw7g2b0v8jkc8jl2m117k1c6gnajg8gs1ymn"; depends=[]; }; maczic = derive2 { name="maczic"; version="0.2.0"; sha256="0r60q34ff38cdxf20b1f07wc4rbac1ch0chri36x221k2cnpxnhh"; depends=[BB emplik MASS mathjaxr mediation pscl sandwich survival]; }; @@ -11905,7 +11973,7 @@ in with self; { madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; magclass = derive2 { name="magclass"; version="6.0.9"; sha256="1a7qs93hww88skzcbrqlajhlxqp7x39bwclw4kd2af263iwjch4h"; depends=[abind data_table forcats maptools sp]; }; magi = derive2 { name="magi"; version="1.2.0"; sha256="1psl3rxhhlm4a1qd3xv1k4lcbj52wpg5aj1lwb83rcpwp3h5blsr"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; - magic = derive2 { name="magic"; version="1.6-0"; sha256="1gybia2aq80ldk1d845y5srncfzbbmpqhgl7vfaz7qqqjs6d85j5"; depends=[abind]; }; + magic = derive2 { name="magic"; version="1.6-1"; sha256="0xkrrg5qk62pfqx0avijdjaljzslpwd0hv2m52qnqwrbx5xfqyfa"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.2.14"; sha256="1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v"; depends=[celestial mapproj MASS plotrix RANN sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; @@ -11918,6 +11986,7 @@ in with self; { maicChecks = derive2 { name="maicChecks"; version="0.1.2"; sha256="1c2n8avrhx0lvw9hi5slymm49lzf37hbkqzkqy230aikgmpv0cpa"; depends=[data_table ggplot2 lpSolve quadprog tidyr]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.8"; sha256="0p6vxzpyms1pxdb0j07izzxinw8xfmmbsj35nkypxyjv92qi802k"; depends=[assertthat R_utils rJava stringr]; }; + mailchimpR = derive2 { name="mailchimpR"; version="0.1.0"; sha256="1f7zjclgcky1qb88638lqhr71gi5myk3d3vxkjl1xnikhcr5l9mp"; depends=[jsonlite]; }; mailmerge = derive2 { name="mailmerge"; version="0.2.5"; sha256="0i11kaxv57imyms96j8dbry8nkll3smb19ba8agcl4zxp5xxqj7a"; depends=[commonmark fs glue gmailr googledrive lifecycle magrittr miniUI purrr rmarkdown rstudioapi shiny]; }; mailtoR = derive2 { name="mailtoR"; version="0.1.0"; sha256="0mnzblhy2vbxkf0k49bw1g08jw84s59zxbjrva2j2q347wzf4rgk"; depends=[glue htmltools]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; @@ -11925,7 +11994,7 @@ in with self; { makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makemyprior = derive2 { name="makemyprior"; version="1.1.0"; sha256="1h5v1n6b318j36w1c225wq8rdvr3dwsy421x43z0ff9ixidhylbv"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; - makepipe = derive2 { name="makepipe"; version="0.2.0"; sha256="1vkhjas5d55n6rs73rccjh53r5cr1i6cn8gnspwir6gmw5fp445a"; depends=[cli nomnoml R6]; }; + makepipe = derive2 { name="makepipe"; version="0.2.1"; sha256="0mhabnmpvjamgam63nrjdimn94azn8crafr9jcwsr08lzlbv9kmv"; depends=[cli nomnoml R6 roxygen2]; }; maketools = derive2 { name="maketools"; version="1.2.2"; sha256="1p98vg5404np5fbiqajznmiqah8lyfv2xf741wjfm2jqkki9nk40"; depends=[sys]; }; makeunique = derive2 { name="makeunique"; version="1.0.0"; sha256="0pf8cl6p3q9fzj20s4gm8amw29291xf6711v0pmp0rcnwva1zav0"; depends=[]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; @@ -11945,9 +12014,9 @@ in with self; { manifold = derive2 { name="manifold"; version="0.1.1"; sha256="1amvx0f0q4s2qgn7q23gp967bcm0djbnb8bmf1bf3fm3iyn432hv"; depends=[Matrix Rcpp RcppArmadillo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; - manydata = derive2 { name="manydata"; version="0.7.5"; sha256="0msk835fq9py7ff7cglzpx0dnv3z2r0cqiv6q0cavhd4qliccyvn"; depends=[dplyr ggplot2 httr jsonlite lubridate messydates progress purrr remotes rlang stringr tibble usethis]; }; + manydata = derive2 { name="manydata"; version="0.8.2"; sha256="1l5g9169l2h4hp74cgnrnsfd0fmqirjk3g9csgxkyhggv2j6sb77"; depends=[cshapes dplyr ggplot2 ggraph httr janitor jsonlite messydates migraph plyr purrr remotes rlang stringr tibble tidyr usethis zoo]; }; manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; - manymome = derive2 { name="manymome"; version="0.1.4.3"; sha256="19snld2vanbdi0k0dqixx97m83k8nyn3pf6085gvcnvci73655bp"; depends=[boot ggplot2 lavaan pbapply]; }; + manymome = derive2 { name="manymome"; version="0.1.6"; sha256="06fxaanmmzvvmq68bjwrq63ndw16w8jg23b8v4cn1j543x7gaqxb"; depends=[boot ggplot2 igraph lavaan pbapply]; }; maotai = derive2 { name="maotai"; version="0.2.4"; sha256="178gsci0sdlqzdi18cnc7qvs008w5db50hd9ayzlvabsc0dk19z2"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapSpain = derive2 { name="mapSpain"; version="0.6.2"; sha256="03j1i5sxxhdvg0g16jwx0n1nnf925clx3cig8bn8l61ab6grlmwm"; depends=[countrycode giscoR rappdirs sf]; }; @@ -11957,46 +12026,46 @@ in with self; { mapboxer = derive2 { name="mapboxer"; version="0.4.0"; sha256="0f873js87dgk8nqnhpxh88svvsbnk81vkm7gycb62mkr4xqsgqs7"; depends=[geojsonsf htmltools htmlwidgets magrittr purrr yaml]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; mapchina = derive2 { name="mapchina"; version="0.1.0"; sha256="0f6ayq4izqxcj0hi2vfg0pc239hxgg7abb5476v5mfjjyi156mni"; depends=[sf]; }; - mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; }; + mapdata = derive2 { name="mapdata"; version="2.3.1"; sha256="1m2r4c8f7fp900g3sdjbfxxnxjla86hn75jd8hi96ms188p0j8b0"; depends=[maps]; }; mapdeck = derive2 { name="mapdeck"; version="0.3.4"; sha256="0agbf6bs3z7gwx1dj9jqlq6cllq5b65x89lkplm5mwhr20lzwvhr"; depends=[BH colourvalues geojsonsf geometries googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; + mapfit = derive2 { name="mapfit"; version="1.0.0"; sha256="0xdkc325y75mcx082b6ncp1n2mfq0yq67j2mkfdcpavnz6s8jdqg"; depends=[deformula Matrix R6 Rcpp]; }; mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; mapiso = derive2 { name="mapiso"; version="0.2.0"; sha256="1vdy5chs45zhrvm4zcqmpsz3sqgzwp8z6ssghkslc3kp2ka8f4px"; depends=[isoband sf]; }; - maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; }; mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.2.1"; sha256="0fmxyxs8kgbd4hdcmam3fd253qngnhl7by9xmca2zbr79m1zjkha"; depends=[curl dplyr httr magrittr pbapply purrr rvest sf stringr terra tibble tidyr tidyselect]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; mapplots = derive2 { name="mapplots"; version="1.5.1"; sha256="18s2y66f8vi8g2r8a25zbgp2xm079r8v8qxv0w71h8krycs6vs9p"; depends=[]; }; - mappoly = derive2 { name="mappoly"; version="0.3.1"; sha256="12lxn4angyac1vaq2vb0xvfd2m9f40l53h9d0ywn3qqiwa77q737"; depends=[cli crayon dendextend dplyr fields ggplot2 ggpubr ggsci magrittr plotly princurve Rcpp RcppParallel RCurl reshape2 rstudioapi scatterplot3d vcfR zoo]; }; + mappoly = derive2 { name="mappoly"; version="0.3.2"; sha256="14prd8aqqbdfjnc923vcxh5ph2d6wi2dfzzvxmj19hff30vimpb2"; depends=[cli crayon dendextend dplyr fields ggplot2 ggpubr ggsci magrittr plot3D plotly princurve Rcpp RcppParallel RCurl reshape2 rstudioapi smacof vcfR zoo]; }; mappp = derive2 { name="mappp"; version="1.0.0"; sha256="19c8575w9r1w32hqwdmmggh21lqahy73vw8g5qbxxna6r77zg5c7"; depends=[memoise parallelly pbmcapply progress purrr rlang]; }; - mapproj = derive2 { name="mapproj"; version="1.2.8"; sha256="10bpib827011fpgvzsmlv4j3i41s0r3cv1hvawwdlk753s7i0pw6"; depends=[maps]; }; + mapproj = derive2 { name="mapproj"; version="1.2.9"; sha256="10nzfbyfkc545qxf51i33g0f8iiidcnhj971ylphnbh7j2sgla6s"; depends=[maps]; }; mapr = derive2 { name="mapr"; version="0.5.2"; sha256="0qc1zqa2yqgy777wbm6lj37vzaaxaz0gdimr62wv9fyddkbkshk4"; depends=[data_table ggplot2 gistr jsonlite leaflet maps RColorBrewer sp spocc]; }; - maps = derive2 { name="maps"; version="3.4.0"; sha256="0ispkx1szgwxhr0zzhdzgqqwcgc6psg7vry4sj4rb89w76rcq63r"; depends=[]; }; + maps = derive2 { name="maps"; version="3.4.1"; sha256="0034114pdakxcx480b45qy9j4vq1v5ss961ssy92w4nqiqhsb4z6"; depends=[]; }; mapsFinland = derive2 { name="mapsFinland"; version="0.1.1"; sha256="0kx9r28lvc6bbl478i9gyy58kbp5hi7akysyld87fxk5x0601j19"; depends=[]; }; mapsPERU = derive2 { name="mapsPERU"; version="1.0.2"; sha256="0ld6dyqrppmc1pna2h8szvr61d3bhljx9pv616wsp5j74na3ynbg"; depends=[tibble]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.1"; sha256="03x5mza9y5kdqshma0k7bynmd3fffayy1j243m5bhw7ln85ws73x"; depends=[gstat raster rgdal rgeos sp]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.3"; sha256="15k7wgbfkcjnsg9qazch949pqha2iv4mg9qzzb7lnb2597il78j7"; depends=[bitops httr RgoogleMaps sf stars xml2]; }; mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; - mapsf = derive2 { name="mapsf"; version="0.5.0"; sha256="04fzrv1qjh0n1h1jzsj5drzi7ax56bj9bwlrqiscy1v3w9cjbavz"; depends=[classInt Rcpp sf]; }; - maptiles = derive2 { name="maptiles"; version="0.3.0"; sha256="025n9fpl55n9wnslpjqr4z5y0q4mn68dplb3fm7wyn968kw7sbig"; depends=[curl png sf slippymath terra]; }; + mapsf = derive2 { name="mapsf"; version="0.6.1"; sha256="0gzqz94d5skrvl41qh1iyjc1r1dd6ag1d5s00l9dlhaawhhz2wfz"; depends=[classInt Rcpp sf]; }; + maptiles = derive2 { name="maptiles"; version="0.4.0"; sha256="0454jnc1l9mr7yh8q4gi07nsqbixsbyadfxyz3bmfmf1zzrqrqmr"; depends=[curl png sf slippymath terra]; }; maptools = derive2 { name="maptools"; version="1.1-5"; sha256="1p155w26hpmqc589kxha0xgw5b4x6610a3im7ap4mjx1sfavvn9w"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.11.0"; sha256="02nkyh3m2l3jblii25c7p2yjjx7lka5l6hx7h882060959bczy47"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; - maraca = derive2 { name="maraca"; version="0.3.10"; sha256="00sz258pg4712j1727n3nxaw5br4hyp4jb6bayz7kqicwcg3rh8c"; depends=[checkmate dplyr ggfortify ggplot2 gridExtra sanon survival tidyr]; }; + maraca = derive2 { name="maraca"; version="0.4.0"; sha256="00qnknqzpw4y99v50r4pvyyn09183z4rc3c9v5z2h712cgnsp1ai"; depends=[checkmate dplyr ggfortify ggplot2 gridExtra hce survival tidyr]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.10"; sha256="08phsghzvi0z78pkb5lkamni83fsw0bqfri99j6bjf6y14aygif9"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; margaret = derive2 { name="margaret"; version="0.1.4"; sha256="1hyflwfw9pphcbxnx9wf0alqi17s5k3j7wvh95ka2h9fvyrpj11r"; depends=[devtools dplyr httr igraph lubridate purrr readr rlang rvest scholar stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.7.1"; sha256="1pvqjdy0j5d9gsplnw58c2fpsap6vv97bf2jz339dg9yrfl7af92"; depends=[checkmate data_table generics insight]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.8.1"; sha256="05ixa9sklk22qmfn7i1163w08zwb1lshf3xlnxrshvkr9bmlsv3x"; depends=[checkmate data_table generics insight]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; mark = derive2 { name="mark"; version="0.5.3"; sha256="01j6zji4mghihmywpdl33wj1pr8bf9vwkqgq50hagl09143d9zpr"; depends=[magrittr]; }; - markdown = derive2 { name="markdown"; version="1.3"; sha256="1w9hrc745zwgsnmr72jkwfh22xqgdsq089qcajlc69xrwya3wxxi"; depends=[commonmark mime xfun]; }; + markdown = derive2 { name="markdown"; version="1.4"; sha256="0ziwirplzjcci2km6wln035qfd2irjl58r77kl98r8s257kavqz0"; depends=[commonmark mime xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markerpen = derive2 { name="markerpen"; version="0.1.1"; sha256="0i9md9vbqkxibjkn37givxzq8mq0232cvv2fyz6g8cj6flxm6vzr"; depends=[Rcpp RcppEigen RSpectra]; }; @@ -12006,11 +12075,12 @@ in with self; { markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; markovMSM = derive2 { name="markovMSM"; version="0.1.1"; sha256="1y5brgpf52jws5s4hmki4q67pnji8vq9xbwiqp5pgdxz60byz1zx"; depends=[mstate survidm survival]; }; markovchain = derive2 { name="markovchain"; version="0.9.0"; sha256="050zfabmxs8pslsp5k0phflx8dqvfknnnpwc0wn9fm6i8npi42xm"; depends=[expm igraph Matrix Rcpp RcppArmadillo RcppParallel]; }; - marmap = derive2 { name="marmap"; version="1.0.6"; sha256="16r7in3m63l7fdwxwfdphcd4fr073fb675zabjxphpxmclikyxdz"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; + marmap = derive2 { name="marmap"; version="1.0.8"; sha256="06s5sqk63h160z3ly01aw4bjjqsl2585d94ln2vs1f1qhlqvs9ni"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marp = derive2 { name="marp"; version="0.1.0"; sha256="0vywqsvmhghldrpnh2dpkgz41r7q463whfhgrn38pg8jnyhliiwi"; depends=[gtools statmod VGAM]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.7"; sha256="0khmma0kd18js142cklw22kvqf64rsz8a7x0d43ykly584d4gdkw"; depends=[doParallel foreach]; }; + mas = derive2 { name="mas"; version="0.1"; sha256="07z0a6yis23zib16msjgx22mrag5xjbjpczj4kanvn8m3xikxrz3"; depends=[Rcpp RcppEigen truncdist]; }; mase = derive2 { name="mase"; version="0.1.3"; sha256="10wyrvh3p344inx5qbzkwh4rr3lmpnh1ikhrghmlqr5607kiy3fm"; depends=[boot dplyr glmnet magrittr Rdpack rpms survey]; }; - mashr = derive2 { name="mashr"; version="0.2.57"; sha256="1jjmqd3z3f7bxj6zw7yw6k9j6aiwnihd8cm14271kkpyy0id8slm"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; + mashr = derive2 { name="mashr"; version="0.2.69"; sha256="1m52bdyfni193fh8xhq6z372zj0cqc8x6wb8cwyls4qjwx3x263c"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; maskRangeR = derive2 { name="maskRangeR"; version="1.1"; sha256="1pdj0jdxrqss6hp20163fh1ywdd6wmwjl4s8gnpd3m9d1j955gr3"; depends=[dplyr e1071 lubridate magrittr raster sp]; }; mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; @@ -12018,7 +12088,7 @@ in with self; { mastif = derive2 { name="mastif"; version="1.0.1"; sha256="1jw7dz4qxyj848qm7lwg0klcw028260nizdi5gdwf7wd5a2nis9c"; depends=[corrplot RANN Rcpp RcppArmadillo repmis xtable]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; match2C = derive2 { name="match2C"; version="1.2.3"; sha256="1ccmva0qgks2r6ya39vvrk1dx8ixmqiy3p0iz8hxcg5qin2pfzgi"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; - matchMulti = derive2 { name="matchMulti"; version="1.1.10"; sha256="1cbxgqx36f19lccd9qjrq3zq3ghqbfjb5pim40k2aykpqp6wmqba"; depends=[coin dplyr Hmisc MASS mvtnorm plyr rcbsubset rlang sandwich tidyr weights]; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.11"; sha256="070cp69snxg1z6b059h4ii9r3nh6b1j4l31j4ixfg1c9hzpb8s15"; depends=[coin dplyr magrittr MASS mvtnorm plyr rcbsubset rlang sandwich weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-2"; sha256="1jj5hzxiivqinkpddmkqdxgi83jm6blann9wgv4g8prn3lvp0i85"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.3"; sha256="1wr1faaixn5scx2c8g2jfvfm489k0ah9isza67gz0db8knja9nig"; depends=[Rcpp RcppArmadillo]; }; @@ -12029,16 +12099,16 @@ in with self; { mathjaxr = derive2 { name="mathjaxr"; version="1.6-0"; sha256="0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"; depends=[]; }; mathpix = derive2 { name="mathpix"; version="0.5.0"; sha256="0imd2rxzh3zndl3laa1fx3m90zr97l02y42s7dhi6b0g2m2lirz4"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matlab = derive2 { name="matlab"; version="1.0.4"; sha256="1shnq9z7n8yp3l457swrhm3p3nm0j2q4xb9bbxblli030wia520r"; depends=[]; }; - matlab2r = derive2 { name="matlab2r"; version="1.2.0"; sha256="12g32495mzp4wpqm2hc4ayp55i89ksqwyz0vnws8jdjk6zrrd6gz"; depends=[styler]; }; + matlab2r = derive2 { name="matlab2r"; version="1.3.0"; sha256="1g99wv3ngfbc7c8lnx0pwzf4n7zmx2zb9nv50byz0avax99y4dwj"; depends=[styler]; }; matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; - matlib = derive2 { name="matlib"; version="0.9.5"; sha256="0m03zygd43r0z7cldiwsc91p1xyni6pdvwm8pz4jcg5bmqasfg0w"; depends=[car MASS rgl xtable]; }; + matlib = derive2 { name="matlib"; version="0.9.6"; sha256="0sm1mm5m242j472hddj9nzfyf235i7w8qxhcbgqwxf35fvdmah2h"; depends=[car MASS rgl xtable]; }; matman = derive2 { name="matman"; version="1.1.3"; sha256="0mwxxqqlg6yydc06hrjqk5ly686s21w5i5z40axxwkmpzyz84sqv"; depends=[data_table dplyr DT forecast lubridate parsedate plotly shiny shinydashboard shinyWidgets tidyr tidyselect]; }; matpow = derive2 { name="matpow"; version="0.1.2"; sha256="1gjrq9bs94xqyms6sfyxp00f0x2gv4dfqcsz29ficzgl4iapns95"; depends=[]; }; matricks = derive2 { name="matricks"; version="0.8.2"; sha256="0ik61jxd4hpw149dbbmis3wsfsim60mw9d0qjwh047qfg6sm1vsc"; depends=[ggplot2 Rcpp reshape2 rlang]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.1"; sha256="0l89s33sjxjb7dyzfny6v7cjw8qmlps4z1bjmlzvcka4qbn6kc2z"; depends=[mvtnorm]; }; matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; - matrixStats = derive2 { name="matrixStats"; version="0.62.0"; sha256="1jjfsi5vzx6js7phlnd3v64fd05fg0jyz8iq5pivy36jdmmh3ql5"; depends=[]; }; + matrixStats = derive2 { name="matrixStats"; version="0.63.0"; sha256="0pqz6mn5l7inh464yj45i6rf8ycab0zdvvjczwsv0bkl442bc060"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; matrixTests = derive2 { name="matrixTests"; version="0.1.9.1"; sha256="1fixzjbrwm0shyvkishff6l5yanqnvhcgbidkw8fsalf3jwwc0ix"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-6"; sha256="09pk0ym6qzribxc6v18cpb6478i4r4kzxpkljjbb3n323zqx5iqb"; depends=[]; }; @@ -12078,16 +12148,15 @@ in with self; { mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mbsts = derive2 { name="mbsts"; version="2.2"; sha256="07sizvj627vhkpkg044593gh8lsmhw7ahqavmrindzjlfwwlfidb"; depends=[BBmisc ggplot2 KFAS MASS Matrix matrixStats MCMCpack pscl reshape2]; }; mc_heterogeneity = derive2 { name="mc.heterogeneity"; version="0.1.2"; sha256="1nsqbc4cqyg6g3s6ish3fbhqygy1kay68smbv0rhivp0x0dv7can"; depends=[boot_heterogeneity metafor]; }; - mc2d = derive2 { name="mc2d"; version="0.1-21"; sha256="1vp7xai7pk260053g2g23wzwn6l1pai0n4vjwjg1j8qd6d95j8mi"; depends=[mvtnorm]; }; + mc2d = derive2 { name="mc2d"; version="0.1-22"; sha256="0811c8jjlbcnn6rlk8g1ny9gk3bll1229j3sdvwrnm87g2awvgdx"; depends=[mvtnorm]; }; mcBFtest = derive2 { name="mcBFtest"; version="0.1.0"; sha256="1fmn9pzbvk508ljspksppqxdvggx5bvipgs54nz9605y6p8zzmi5"; depends=[MASS]; }; mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcStats = derive2 { name="mcStats"; version="0.1.2"; sha256="1r8dxdfcvznl2968xr6fbany1rh7wq5z1p7fhdf5g4b5l28j8pf9"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr rlang tidyr]; }; mcb = derive2 { name="mcb"; version="0.1.15"; sha256="0k986m2vyvfqxw3jmlyvf6r5bq68y92fymy03lffq5lmiqhypixj"; depends=[ggplot2 glmnet lars leaps MASS ncvreg reshape2 smoothmest]; }; - mcbette = derive2 { name="mcbette"; version="1.15"; sha256="0wilbz4zwjnzxfa3nail10a8y1cjq1myb2lqyj01k8s5kpwb0isq"; depends=[babette beastier beautier curl devtools mauricer Rmpfr testit txtplot]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; mcboost = derive2 { name="mcboost"; version="0.4.2"; sha256="0748av1dy6fag33slhi24km17qpi7y6cydl1vmdhxz96902lcr5r"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines R6 rmarkdown rpart]; }; mcca = derive2 { name="mcca"; version="0.7.0"; sha256="01nm0plgkik241qhd06v1vs84lf7agc0vkxa27cpr5qlfl4cm4zb"; depends=[caret e1071 MASS nnet pROC rgl rpart]; }; - mccca = derive2 { name="mccca"; version="0.1.1"; sha256="1rvyn4b72xa45r95jjl80b3wiq152hh3pndwbngmq1078wl84xbk"; depends=[ggplot2 magic RColorBrewer stringr wordcloud]; }; + mccca = derive2 { name="mccca"; version="1.1.0"; sha256="0iw4pgypdhxwny93b80y69kwwpqvmbv71qa05jlhylx7lqbsnbyb"; depends=[ggplot2 magic RColorBrewer Rcpp RcppArmadillo stringr wordcloud]; }; mccf1 = derive2 { name="mccf1"; version="1.1"; sha256="023pvjfc1iv7hac3gz5rakg6ljs92j0qfm4givad5iiwv5n4k3zr"; depends=[ggplot2 ROCR]; }; mcclust = derive2 { name="mcclust"; version="1.0.1"; sha256="1mifgrm2canfcrln9rspqwws1f61vrana5m4lap54lys0kiyrrqq"; depends=[lpSolve]; }; mccmeiv = derive2 { name="mccmeiv"; version="2.1"; sha256="1lkghvvwxvg474p37h1mpbackr5qmy05qkx8yiq4x066wrfq1w1i"; depends=[MASS numDeriv survival]; }; @@ -12099,11 +12168,11 @@ in with self; { mclcar = derive2 { name="mclcar"; version="0.2-0"; sha256="0zgf7ha22586nh1yzdnhz1rzrqkn6yzr12qva9ag297ry4z4bn5y"; depends=[fields maxLik nleqslv rsm spam spatialreg spdep]; }; mclm = derive2 { name="mclm"; version="0.2.7"; sha256="1vpg6xsa8im60ld5mlm6yhf2prs6kmwn0sn12b9g8v27dgw3h0iq"; depends=[ca crayon dplyr Rcpp readr stringi stringr tibble tm xml2 yaml]; }; mclogit = derive2 { name="mclogit"; version="0.9.6"; sha256="0sbglgak6jhhpx65jnj59hbpvzs8qjsdjc4w02z0m5j9hrnmzp4s"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="5.4.10"; sha256="0wh6nsbma4b0wsmqm2ynbznl2wlwdly4vg583f6z0zd1qkrvn6ra"; depends=[]; }; - mclustAddons = derive2 { name="mclustAddons"; version="0.6"; sha256="1sk1inwln76k7ygja9sdzil1i1q8yqnvyd0l0vm81ih66ilivbzb"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; }; + mclust = derive2 { name="mclust"; version="6.0.0"; sha256="0ahj5161lmid0gxyw6vidd4ig50l1374iisn9970zvx1rdp30z6y"; depends=[]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.3"; sha256="1kxrms77m7n9lv32771zvwg82xqh5kx8al6f0bknsj8idq8aqbh3"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-7"; sha256="0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p"; depends=[]; }; - mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.1"; sha256="0nw33xb7x695g8i91hfj2apgywbyzf2k587drzridqnfmbm26pni"; depends=[coda HDInterval MASS]; }; + mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.3"; sha256="1jw4wyppzlnxaa3iahbwx4gxs3zvppy980rc92dvy18y2sr5138v"; depends=[coda HDInterval MASS]; }; + mcmcabn = derive2 { name="mcmcabn"; version="0.5"; sha256="0mr6zqsqbd9pasdz5sz7capirvfz0gws2v0i914h6pxx3blws7m5"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; }; mcmcderive = derive2 { name="mcmcderive"; version="0.1.2"; sha256="0v89nyvr2d57zvjy9qq6drqb48s4n88hb65pima1gx4aqb479yfh"; depends=[abind chk extras mcmcr nlist purrr universals]; }; mcmcensemble = derive2 { name="mcmcensemble"; version="3.0.0"; sha256="1yf8mm0nmw0x89pj3is5rv3arcfbxvkfh8bip1sprcqzsrixa0s8"; depends=[future_apply progressr]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; @@ -12116,10 +12185,10 @@ in with self; { mcp = derive2 { name="mcp"; version="0.3.2"; sha256="0vqn0lb7nc5hp2ls2h17ybldxrqj6l1hd4pk5pr4d22yyidlvx96"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; - mcr = derive2 { name="mcr"; version="1.3.0"; sha256="066hj3kpj252izq36a0m6a54kqybg52l7pxzaw1hjxx6yyr90aiv"; depends=[robslopes]; }; + mcr = derive2 { name="mcr"; version="1.3.1"; sha256="0ybhskszzs05m0ql231jj7c7039dwmghnq4gfzp2ww6vj1agshpl"; depends=[robslopes]; }; mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; - mctq = derive2 { name="mctq"; version="0.3.0"; sha256="09wdikzwfln7xmp7lsv58pzpwi08nx7srhsv9fjf40f6y39dvqv3"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; + mctq = derive2 { name="mctq"; version="0.3.1"; sha256="0ylk0bsgfs34b6213qsb1hrjfaqxnh6rz6in37l0xg00sqkl3ab2"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; mcunit = derive2 { name="mcunit"; version="0.3.2"; sha256="16nnm50g87iaf058b1w5w5hphx99xplczndcbv1356f2gs2gfy6l"; depends=[Rdpack rlang simctest testthat]; }; mcvis = derive2 { name="mcvis"; version="1.0.8"; sha256="0dc7jwdfzyn6x785lbwikpql96b3gh9fhb65fv4sk9ib28b2kpmy"; depends=[assertthat dplyr ggplot2 igraph magrittr psych purrr reshape2 rlang shiny]; }; mcwr = derive2 { name="mcwr"; version="1.0.0"; sha256="1aqmrxjmllq1waw3pzmwhqd07q02n1h1g6c0qi1fvay4xz0rwgik"; depends=[]; }; @@ -12127,7 +12196,7 @@ in with self; { md_log = derive2 { name="md.log"; version="0.2.0"; sha256="1k0l3imx1jdlf6fks7x8q8lg2l4090fq069h5x4i0nwq71sfslj0"; depends=[futile_logger]; }; mda = derive2 { name="mda"; version="0.5-3"; sha256="0qw4scc2w7jmnxssj5w2mdxb9rrl4dscqn54gplzm1gk2yf419mx"; depends=[class]; }; mdapack = derive2 { name="mdapack"; version="0.0.2"; sha256="1dfcjh8yax06m890ql0kc2rn539z4xbhw7bq9a8cbrm7jnkq03iq"; depends=[covr curl devtools FactoMineR ggplot2 gh git2r httr knitr mice openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat VIM]; }; - mdatools = derive2 { name="mdatools"; version="0.13.0"; sha256="0mirlj79g2zy58dgg1yy2f1m5yr8w4rvf4hgs7q9vl50fiypv5hp"; depends=[Matrix]; }; + mdatools = derive2 { name="mdatools"; version="0.13.1"; sha256="19l51va1fl0cx18ml6n1kfgbc8in9isb1mzhl84gshs9f6hnrmzh"; depends=[Matrix]; }; mdbr = derive2 { name="mdbr"; version="0.1.2"; sha256="1c33v2dqz1jjh730p486bi07h9m9clpcfrbvhbvwb8fslqxg76qd"; depends=[readr]; }; mde = derive2 { name="mde"; version="0.3.2"; sha256="121bzypndsx4abls1f7rjrvg98rqkb155vd5aiql8vi1lwgzy9jl"; depends=[dplyr tidyr]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; @@ -12174,7 +12243,7 @@ in with self; { mefa4 = derive2 { name="mefa4"; version="0.3-9"; sha256="0g46z14r7d8wkyxsp58i6007r9jljf269snrbachamy2wlmpc1g1"; depends=[Matrix]; }; meifly = derive2 { name="meifly"; version="0.3.1"; sha256="0pgmxa4g16zhx3jx5g56h2s1f4cr4bkz3bp7404dm2729083rvjx"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.8.0"; sha256="0gfg09idkqvlvahxipabcipwqv6f11c4wcw9i0p1c66j70b5dcy3"; depends=[BH dqrng Rcpp RcppEigen]; }; + melt = derive2 { name="melt"; version="1.9.0"; sha256="04k8w06siskwn8g2x9p6p8gxl4l9mjmrk759czglpfb1h6lb953z"; depends=[BH dqrng Rcpp RcppEigen]; }; meltr = derive2 { name="meltr"; version="1.0.1"; sha256="0rg6frch51ydigsas6ycfhkgd0jldi95paq6gmja6rcq6vlwnhgj"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.3"; sha256="1j2iz05xr9ddj9pk2yw7j7kjfr9rxmxkk123c6336fqdm14wvd21"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.17"; sha256="0nlw0mf5dhp9x5ymc33a600i199c5g3qi80g5jqacp0m0q6s2b8n"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; @@ -12191,7 +12260,7 @@ in with self; { memoise = derive2 { name="memoise"; version="2.0.1"; sha256="1srdzv2bp0splislrabmf1sfbqfi3hn189nq7kxhgjn8k3p38l7q"; depends=[cachem rlang]; }; memor = derive2 { name="memor"; version="0.2.3"; sha256="1b3rjh121in7gi6khbhh2d1r0998a24ifcg6hpv8cdksl6lhm330"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; - memuse = derive2 { name="memuse"; version="4.2-1"; sha256="1wvwnjaaiv2647561z2b55dss35033ildx4kk8hzxfzgsjmdpsgm"; depends=[]; }; + memuse = derive2 { name="memuse"; version="4.2-2"; sha256="1rdp8wi9sd03qdak7mifvdc1szgk0fdzmhbikdfsza8xshm2pp33"; depends=[]; }; merDeriv = derive2 { name="merDeriv"; version="0.2-4"; sha256="1piswi4l7ri3251shmanhygipmsw8zg701jqd0am1s76kj16l9cc"; depends=[lavaan lme4 Matrix nonnest2 numDeriv sandwich]; }; merTools = derive2 { name="merTools"; version="0.5.2"; sha256="1ka9aa3fgs1kqfqhi1sz6v6g5mbbbzxyb7c0n8s981g8d04vsi00"; depends=[abind arm blme broom_mixed dplyr foreach ggplot2 lme4 mvtnorm shiny]; }; mergeTrees = derive2 { name="mergeTrees"; version="0.1.3"; sha256="17aqgfd1ky5zq6i9s1djvdqjdd8lzkblf0cdw82i9mpzfhcz1fav"; depends=[Rcpp]; }; @@ -12200,6 +12269,7 @@ in with self; { merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; meshed = derive2 { name="meshed"; version="0.2.3"; sha256="061q6b8603jbvlqkl6ddcmw1rgy53sqbxbsxhv218f7px392b1vf"; depends=[dplyr FNN glue magrittr Rcpp RcppArmadillo rlang]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; + messy_cats = derive2 { name="messy.cats"; version="1.0"; sha256="0znjp1wcrkpgm778z5iqw91bnk8vv0x04dpng8pcmh0igsmc3j68"; depends=[dplyr gt rapportools stringdist stringr varhandle]; }; messydates = derive2 { name="messydates"; version="0.3.1"; sha256="125jb6sv00i1f89p12dy0z4zfynlz829gvxs7rlvhlyaznj9csvk"; depends=[dplyr lubridate purrr stringr tibble]; }; metR = derive2 { name="metR"; version="0.13.0"; sha256="0cffi32glgnmjan2xy4cb836qf3nj6k2mjkni6mqlblz4gh128w1"; depends=[checkmate data_table digest Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; @@ -12221,7 +12291,6 @@ in with self; { metaSurvival = derive2 { name="metaSurvival"; version="0.1.0"; sha256="05f103fi287y64gys73a55snw54bnph69q8dykfii10dykd44g0y"; depends=[mvtnorm survival]; }; metaboData = derive2 { name="metaboData"; version="0.6.3"; sha256="0a8jz7q0a5dri5p2qyw0ah0j4w0xjyfj6gkh2gcsazac1d5fl02i"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; metabolic = derive2 { name="metabolic"; version="0.1.1"; sha256="0rq4yi2r0l0ghn22pj2gmmhwqjykaxznbd185fjr5r1gzvlh45rv"; depends=[cli dplyr forcats ggfittext ggimage ggplot2 glue magrittr meta patchwork purrr rmarkdown scales stringr tibble tidyr usethis]; }; - metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; }; metabolomicsR = derive2 { name="metabolomicsR"; version="1.0.0"; sha256="0b12nddczh8i6hnv679pa521yps26n98j2cnai8s67xiw5ir0y5v"; depends=[data_table ggplot2 plotROC]; }; metabup = derive2 { name="metabup"; version="0.1.3"; sha256="1lwndn46bayw6jzxxpd8hywnzxydiz0nlm33nxr855035rmv231k"; depends=[ggplot2 partitions]; }; metacart = derive2 { name="metacart"; version="2.0-3"; sha256="1wim72fvhx6cyc16c9gl8cwzbhlpzilk7q8gi4jnzzazqmc1kb5n"; depends=[ggplot2 gridExtra Rcpp rpart]; }; @@ -12229,7 +12298,7 @@ in with self; { metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metaconfoundr = derive2 { name="metaconfoundr"; version="0.1.1"; sha256="13pm4hy68b3h6x8i3kbvgvprn6k9g5nn3agiplnqlng908mmlrzk"; depends=[dplyr forcats ggplot2 magrittr purrr rlang shiny stringr tibble tidyr tidyselect]; }; metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; - metacore = derive2 { name="metacore"; version="0.1.0"; sha256="1m7mri6mkk39m7311igvfv31v4fa8m38cljbzlmrl2rjmw544fnj"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; + metacore = derive2 { name="metacore"; version="0.1.1"; sha256="0hcaf4fq5z1nv910yvs5gav9scfwrm0b60n80ycsspkimmg86cmj"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; metadat = derive2 { name="metadat"; version="1.2-0"; sha256="1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"; depends=[mathjaxr]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.7"; sha256="0ch86qqs3872d28c8wrs24ryg2xahqsmndmzjc3z6qznkrq1adzh"; depends=[Rcpp]; }; metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.2"; sha256="1y1csfp57qrv394hj96yr5v3brxw7v0a07k2pg7ypw08gshvgqjm"; depends=[metadynminer misc3d Rcpp rgl]; }; @@ -12247,6 +12316,7 @@ in with self; { metamicrobiomeR = derive2 { name="metamicrobiomeR"; version="1.2"; sha256="0fgdjy2s47pqmb9x79a4sf0kn4hbc49rd41jnzw0d3ll1l9kwy7f"; depends=[compositions dplyr gamlss gdata ggplot2 gridExtra lme4 lmerTest matrixStats meta plyr tidyr zCompositions]; }; metamisc = derive2 { name="metamisc"; version="0.4.0"; sha256="12ydvkpni7a7v0x8lfknsy4c6hmgjqri3l33m4fwsai3rhnq6hsa"; depends=[dplyr ggplot2 lme4 metafor mvtnorm plyr pROC]; }; metan = derive2 { name="metan"; version="1.17.0"; sha256="1d988svhwcg02qwag19265jvhrpnicgzzfxywh0w6rxy2w11394s"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; + metanetwork = derive2 { name="metanetwork"; version="0.7.0"; sha256="0rlnalmfmiih154zq6rk4sq12y7nr8fn1ws8mrlryy04gznz6igw"; depends=[dplyr GGally ggimage ggplot2 igraph intergraph magrittr Matrix network RColorBrewer rlang sna visNetwork]; }; metansue = derive2 { name="metansue"; version="2.5"; sha256="098f3jfqxraf86p6ciqpryqs1vwbhsmy3wngqj50d5ndf302qxmc"; depends=[]; }; metap = derive2 { name="metap"; version="1.8"; sha256="0asmypxfxly4xmcjf3yzid5zqlzg88z0brij2splfk4avsl035gf"; depends=[lattice mathjaxr mutoss qqconf Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.2.0"; sha256="0npyjj93kk8zc2xcsyfm3v09my89zw9f1smrnl4kpcpwyk3g1q6a"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; @@ -12272,19 +12342,19 @@ in with self; { meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; meteospain = derive2 { name="meteospain"; version="0.0.4"; sha256="0a4r86qqq2qxms9dilj7mhz1hgrc6yl7b7mi60wky0n8mjfw0ciz"; depends=[assertthat cachem crayon curl dplyr glue httr jsonlite lubridate magrittr memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; - metevalue = derive2 { name="metevalue"; version="0.1.10"; sha256="1kwcxrp077zghpc04aykm0zcijdbvq00izf7dilk4s6llgmcacq2"; depends=[dplyr psych sqldf]; }; + metevalue = derive2 { name="metevalue"; version="0.1.13"; sha256="1xhzxw0wji7iiql7cs72lzvl5d52hjidxa0j72lkyzwdyq951q8d"; depends=[dplyr psych sqldf]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metrica = derive2 { name="metrica"; version="2.0.1"; sha256="1crxa05gyxl6g5h4vi930alg4n688nlw1nmyg3jv8if7yszldva2"; depends=[DBI dplyr energy ggplot2 ggpp minerva rlang RSQLite tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - metrix = derive2 { name="metrix"; version="1.0.0"; sha256="121g2vflwrrix1jjx26g4jxd6chdw6wghyp2adyvky45zckc9zi7"; depends=[Matrix stringr vegan]; }; + metrix = derive2 { name="metrix"; version="1.1.0"; sha256="0ixp868pag05a6h4l8q4x55w0dg4xki4q6klfi9dzx82knzb7s9l"; depends=[Matrix stringr vegan]; }; metro = derive2 { name="metro"; version="0.9.1"; sha256="0agmwvbwhpn5nzzkyz20pspbv6i80i636fhf9sqydgl1fskknrf2"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.3.1"; sha256="0kzmbwhziknk4djql88kvanb0pncnxq0c6b7rsfd1z7c0c8kpyv0"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; mev = derive2 { name="mev"; version="1.14"; sha256="0pxjvvmrhjrdcznknncyhjghscajkw0q0y4r3ai22nkx70gln6bv"; depends=[alabama evd nleqslv nloptr Rcpp RcppArmadillo]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.1"; sha256="1pnjzfq4rdjjlqp1mxxlpkhkfgq1nym8pgaqrvpm76zw4xnx7p7m"; depends=[]; }; - mexhaz = derive2 { name="mexhaz"; version="2.3"; sha256="14zfk9wnb062zvqj1szkas02s5pvw0i7gc618x5dwddffvl6kpfi"; depends=[lamW MASS numDeriv statmod survival]; }; + mexhaz = derive2 { name="mexhaz"; version="2.4"; sha256="1dh92gawq6hdq0594m5ayzrafxi2mz3362dx3dgvdmznwcyqvsbz"; depends=[lamW MASS numDeriv statmod survival]; }; mexicolors = derive2 { name="mexicolors"; version="0.2.0"; sha256="0vbhwaq19hqd63qjybssgqxkawjr6vnar6k0nrb583hh1q9hjyg2"; depends=[]; }; mfGARCH = derive2 { name="mfGARCH"; version="0.2.1"; sha256="1pcabijwhdxhdlrdjvi2zl8la939igsdy3j1yv0ic8wvkpw1sh4x"; depends=[maxLik numDeriv Rcpp zoo]; }; mfaces = derive2 { name="mfaces"; version="0.1-4"; sha256="0svvnpka2y1p21gvdyc7csw6m0g3kziszw2ll9bq5gpcnl69qk4n"; depends=[face Matrix matrixcalc mgcv]; }; @@ -12293,11 +12363,10 @@ in with self; { mfp = derive2 { name="mfp"; version="1.5.2.2"; sha256="1w61hj0dizgcpa3qv9ks9lvvbic7xp2cnip4klkdb9ss63vws8bv"; depends=[survival]; }; mfpp = derive2 { name="mfpp"; version="0.0.4"; sha256="0n752nm102cxscbi76hy1bh8kqd1svwknkj6l63jq5zd1z63a2yg"; depends=[genalg ggplot2 igraph nsga2R pracma reshape2 Rfast]; }; mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; - mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; + mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.5"; sha256="0i5f8xghdch9d1cvfgiq2pscpq53ms7ik7jk16gss8i0cx2d3m94"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.9"; sha256="09n18ypjdwcca38i2v636ijgnzwalv7wh55z82a0pfrbzabiynn1"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam shiny viridis]; }; mgcv = derive2 { name="mgcv"; version="1.8-41"; sha256="14769zs1sh1bz3c87hs4vhy2y9n28vglfqfrdgpysxdyw87h6yig"; depends=[Matrix nlme]; }; - mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; }; mggd = derive2 { name="mggd"; version="1.0.2"; sha256="1za864qwchji90q6p56qrxbwgn73shl8yf4b6giq5wc63m41hn1w"; depends=[MASS rgl]; }; mglasso = derive2 { name="mglasso"; version="0.1.2"; sha256="1896fg1gdgah8vmikz2br6v0rslhhh2frffkjiy6fnw4qxa5zsv9"; depends=[corpcor ggplot2 ggrepel gridExtra Matrix R_utils reticulate rstudioapi]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; @@ -12326,8 +12395,8 @@ in with self; { micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-10"; sha256="0lrwa0h7xc8scb7rh1wq71srzbhnk174k2qk1jd4adqqr308bgzp"; depends=[MASS miscTools systemfit]; }; micar = derive2 { name="micar"; version="1.1.2"; sha256="1zx2x6r4m0ihwhjd2n4rmk9da7p9bpadk65h7mbb0rgvwrspkzf8"; depends=[httr jsonlite]; }; micd = derive2 { name="micd"; version="1.1.0"; sha256="07zq8g9nfhw4mdjp9cj8pg3nh68vd7wj6zxb3x9wn2wwmrssj6f9"; depends=[mice pcalg RBGL Rfast]; }; - mice = derive2 { name="mice"; version="3.14.0"; sha256="01fnfrr7adp29s5kic95r9q0rdznkz2pjmziyimnrqzyicyvfyzq"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr withr]; }; - miceFast = derive2 { name="miceFast"; version="0.8.1"; sha256="01nxjh395wb1cs6h5drm9xy3ahxb4cybx7xhdjv6g5jqjv4229m6"; depends=[data_table Rcpp RcppArmadillo]; }; + mice = derive2 { name="mice"; version="3.15.0"; sha256="0yz88b40mpn24z40yfpxrkwrsxk362gwks3v5x69rkix1qkdsr1x"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr]; }; + miceFast = derive2 { name="miceFast"; version="0.8.2"; sha256="0n4hi9f28mzc9h41g7y3nnkr5lq7npafk6ias17xsqw28agc95ir"; depends=[data_table Rcpp RcppArmadillo]; }; miceRanger = derive2 { name="miceRanger"; version="1.5.0"; sha256="0xm8fcvjf6pcfyyk1gnwfdac44q6b33i5byja9lqxy7vygbxmgxd"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; miceadds = derive2 { name="miceadds"; version="3.15-21"; sha256="0ybjxny2v0dd357pk0a8rg3llm5qglr4q3jrgcjjxkxzl2m879bc"; depends=[mice mitools Rcpp RcppArmadillo]; }; miceafter = derive2 { name="miceafter"; version="0.5.0"; sha256="192widdnj4ahv2rp09jzzz68n0ycdplv24p50kqd3i6zqnr1cl0s"; depends=[car dplyr magrittr mice mitml mitools pROC purrr rlang rms stringr survival tibble tidyr]; }; @@ -12342,8 +12411,7 @@ in with self; { microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; - microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; }; - microeco = derive2 { name="microeco"; version="0.12.0"; sha256="043jwk93621vry2rmmzjwyivpdip51q0j2yq41fb9qly0j84dj13"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="0.13.0"; sha256="06f53lyvv8r9bsvx5b0gx0jacwfjpiw2ys0g9b3r53xbx4vb1gkd"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.5"; sha256="18y8m63k9l4dir8w1qbbi1g86506yajvi6qs0j1588575lak1l62"; depends=[ggplot2 maptools RColorBrewer rgdal sf sp]; }; micromapST = derive2 { name="micromapST"; version="2.0.1"; sha256="1pshb5w8v1j1ayff2b95fjcqj0ias5z2znhm6s9x1p38808l9rrk"; depends=[cleangeo labeling maptools pbapply RColorBrewer readxl rgdal rgeos rmapshaper sf sp spdep stringr writexl]; }; @@ -12360,9 +12428,10 @@ in with self; { midasr = derive2 { name="midasr"; version="0.8"; sha256="0mzyxf8q2wmbsiczkhhgigy7jmi8zr4w4a83f97va35vfhxi217k"; depends=[forecast Formula MASS Matrix numDeriv optimx quantreg sandwich texreg zoo]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; + miesmuschel = derive2 { name="miesmuschel"; version="0.0.2"; sha256="1zk4yj62g47lkc0a6xixjkhspbngln6fnddm891y61pcki5zlqcd"; depends=[bbotk checkmate data_table lgr matrixStats mlr3misc paradox R6]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; migest = derive2 { name="migest"; version="2.0.3"; sha256="0v59yai9xs2yj17lvm7nmw7jzfgglilixwmwy9czi3z4bhb7gknl"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices mipfp purrr stringr tibble tidyr]; }; - migraph = derive2 { name="migraph"; version="0.12.1"; sha256="1p81k4ifch10i60xz2b5rm360n2bzaj7dysw21ada93whgszj2f8"; depends=[BiocManager dplyr furrr future generics ggforce ggplot2 ggraph igraph network patchwork pillar purrr rlang sna tidygraph tidyr]; }; + migraph = derive2 { name="migraph"; version="0.13.0"; sha256="0xf9yr7mlw9xkb8jacchyf8j7670xhvzbgakvxc6bclyys9gp7rh"; depends=[BiocManager dplyr furrr future generics ggforce ggplot2 ggraph igraph network patchwork pillar purrr rlang sna tidygraph tidyr]; }; migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.1"; sha256="198lxv6s1wc6j10ygbc4l2irmmv5448f9av9zsybnpijballx349"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.3"; sha256="1y012la9vmchnlcigcciq878w9hlw8zgzp76b3h9b6fwhaa872pm"; depends=[arm gWidgets2 mi]; }; @@ -12393,10 +12462,11 @@ in with self; { minpack_lm = derive2 { name="minpack.lm"; version="1.2-2"; sha256="11yz6hk2r33571d16kq01cb1x6sgdzi6jmksqlrm8mr84l95c2f7"; depends=[]; }; minqa = derive2 { name="minqa"; version="1.2.5"; sha256="1gpli7f3piz3jqjj63a6bk9v1jlygjdaqqqvqsr083crj0imd0wv"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="2.0.0"; sha256="0pczdg22i3if048i64chzcpnv3ay8p0anmhwjmzm29577z0jgms8"; depends=[]; }; - minval = derive2 { name="minval"; version="0.8-2"; sha256="06anbb90c8wg0374ykmb6chcwrcdyi903jkbrmrv3kgx511l699z"; depends=[]; }; + minsample1 = derive2 { name="minsample1"; version="0.1.0"; sha256="13kmqxa3pbllv16fzn0v7msffsaar79y8xnvnbrcfhwa76031f8f"; depends=[]; }; + minsample2 = derive2 { name="minsample2"; version="0.1.0"; sha256="0q1rp6mdyhcp806a0m0sr4ldm5rj78wk2fljzylxfjs4c734lpbk"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.7.0"; sha256="0jqvjxphalzchslzdq39d885kr923hg4bvwxd6chdsn2ii6w8aj6"; depends=[nanonext]; }; + mirai = derive2 { name="mirai"; version="0.7.1"; sha256="02qs2dncxmvfx0cm4fkm6qqvi6mw9zbmhxdcqzig8kspvvqhmfnr"; depends=[nanonext]; }; mirt = derive2 { name="mirt"; version="1.37.1"; sha256="0h6i6mlns696ak59p9blk498bpmyx8090hl5c59n46vznpz38cq6"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.12.2"; sha256="0xxbja9d1n9r633isa7jzz1b46ins97q18hvlq2p1dal1hzxxh16"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; @@ -12405,7 +12475,7 @@ in with self; { misaem = derive2 { name="misaem"; version="1.0.1"; sha256="05m7k8mgbpkv5szislvf3q45pk5f8z54ibddhi8pkhwa9w00xkjk"; depends=[MASS mvtnorm norm]; }; misc3d = derive2 { name="misc3d"; version="0.9-1"; sha256="0r9x57s63kx9f6dgam2nhbziq8nrs9wd8pk7g76hds2kw46vnyx0"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-5"; sha256="0g6wk2zxqq6j949hnbvwmfd72y25zjfbrfrfxsj21q84w41fgjkb"; depends=[MASS MCMCpack mvtnorm R2jags]; }; - miscFuncs = derive2 { name="miscFuncs"; version="1.5-2"; sha256="17vy9934ndd8wyhvnyixp2j7ckrksgyx2y8kgvryyp3xxw3bxsz7"; depends=[mvtnorm roxygen2]; }; + miscFuncs = derive2 { name="miscFuncs"; version="1.5-3"; sha256="09pprwqbwz8iiggjqvnv3m2mkiy26zncvs9rn0mba2wk0yfzq4py"; depends=[mvtnorm roxygen2]; }; miscIC = derive2 { name="miscIC"; version="0.1.0"; sha256="0pnwc3b318xxnmb7scrj4qkqlvqfyczspdg496kl0ixsiaafr1ad"; depends=[nnls]; }; miscTools = derive2 { name="miscTools"; version="0.6-26"; sha256="16pwfxpyl0zv3hjxx2kjchkg7p6kbj0s2rrpskj7rkhjr9imlg5y"; depends=[digest]; }; misclassGLM = derive2 { name="misclassGLM"; version="0.3.2"; sha256="1b344dy5fm45jkjrqcx16905n9x0iwihr73mq2m0qfq7ay87nsrh"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; @@ -12451,6 +12521,7 @@ in with self; { mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; }; mixedCCA = derive2 { name="mixedCCA"; version="1.6.2"; sha256="07apl37kwj47w14jxsvwdiacnwd517zs3ff2c70fhb6ncbgp8adv"; depends=[fMultivar irlba latentcor MASS Matrix mnormt pcaPP Rcpp RcppArmadillo]; }; mixedClust = derive2 { name="mixedClust"; version="1.0.2"; sha256="10hysjsld58cv0xif01xw08r0alr8xsnbp931x59lb36yi9g6f0m"; depends=[fda Rcpp RcppArmadillo RcppProgress]; }; + mixedLSR = derive2 { name="mixedLSR"; version="0.1.0"; sha256="0a514w88k1lwcdmq7ginn4qmf0mdj747lhgxzx15nh0hp0xq26lc"; depends=[ggplot2 grpreg MASS purrr]; }; mixedMem = derive2 { name="mixedMem"; version="1.1.2"; sha256="1p0gplfcn663xp40dk0yg70qffn1fwa9gxv7bppflgm9wkn8g3l5"; depends=[BH gtools Rcpp RcppArmadillo]; }; mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.7"; sha256="06bp8w9r6fxhnp2ga3hig7fbl2nsvfvwxggbfd7nfc60c91p80mq"; depends=[daewr lattice]; }; @@ -12459,17 +12530,18 @@ in with self; { mixl = derive2 { name="mixl"; version="1.3.3"; sha256="0vxvs6lvnkijhdy78lw19hp11ylf4afyg0v5xc5izbhwk3cp5nga"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; mixlm = derive2 { name="mixlm"; version="1.2.6"; sha256="1qccwiaqyvmpyklbbp6ay3xvln9wfizaxi6fjizzx2bjpng5043p"; depends=[car leaps multcomp pls pracma]; }; mixmeta = derive2 { name="mixmeta"; version="1.2.0"; sha256="093f6jjq0hc49k5kmjp17s2lv3swpssfxnra80bwv59ggav8w8d8"; depends=[]; }; + mixopt = derive2 { name="mixopt"; version="0.1.1"; sha256="0szqrlnnbq152343dic54rjj8rafrnwci1xfjy014q1nwjxz0wfd"; depends=[]; }; mixpoissonreg = derive2 { name="mixpoissonreg"; version="1.0.0"; sha256="1pk45p96kwl3gvi5523vm824s1bb5aqpn9qqpqy8kjy2pd2a4k32"; depends=[dplyr Formula gamlss gamlss_dist generics ggplot2 ggrepel gridExtra lmtest magrittr pbapply Rfast rlang statmod tibble]; }; mixreg = derive2 { name="mixreg"; version="2.0-10"; sha256="1vmidnhb899lmprybym71w0l869msrgvlqr3099kwj05sph85pwm"; depends=[]; }; mixsmsn = derive2 { name="mixsmsn"; version="1.1-10"; sha256="1w31br65la62zw847bw4bz0shvgna680wagxnqmc71kpy4a9mv3x"; depends=[mvtnorm]; }; - mixsqp = derive2 { name="mixsqp"; version="0.3-43"; sha256="1qics04w0swyp216d6g8dmsph8q2kpadpacp66h2qih3521js12q"; depends=[irlba Rcpp RcppArmadillo]; }; - mixtools = derive2 { name="mixtools"; version="1.2.0"; sha256="08whic8hmmzi55b7azwj11l2x5r9s5qbyrv7s9jr08156vqkw0zg"; depends=[kernlab MASS segmented survival]; }; + mixsqp = derive2 { name="mixsqp"; version="0.3-48"; sha256="02cjg33m5iqziyy0xi11wvbm5qnlgfy51r1dbpjzyhqsrv1dfx48"; depends=[irlba Rcpp RcppArmadillo]; }; + mixtools = derive2 { name="mixtools"; version="2.0.0"; sha256="03by64xi7yka0hzc1qyz1jdqzah6isvr3cdsc7g5v6hb4f178kl5"; depends=[kernlab MASS plotly scales segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.4.0"; sha256="1lca26s80f92c18wkpp5gs2ifylnyqyg933w7r5ir3xvsfbk0lfh"; depends=[minpack_lm]; }; mixtur = derive2 { name="mixtur"; version="1.2.0"; sha256="1kdzhjad6bwg6ga4bm545iw147h6zhj1a038ajlnbgynd9j8h8nh"; depends=[dplyr ggplot2 RColorBrewer rlang tidyr]; }; mixture = derive2 { name="mixture"; version="2.0.5"; sha256="16ydhsgssd5jbhf03llxy2gjhv3h3bqi01s45jcb9dwc3mbd306b"; depends=[BH lattice Rcpp RcppArmadillo RcppGSL]; }; mize = derive2 { name="mize"; version="0.2.4"; sha256="1dfhldxsm1il9avfxvaiir9r878dp7swyc9c8ilm6llx208sd5d5"; depends=[]; }; mizer = derive2 { name="mizer"; version="2.3.1"; sha256="1r14mpwb96xhibf7j3735q67xl17pkjx9pb2m1j4l8rjjpdxl3l0"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; - mkin = derive2 { name="mkin"; version="1.1.1"; sha256="1z34z1bymki5x39pq9gxl7a0c9wki6yzjzrbbfmd2ghi55ick8wh"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6 saemix]; }; + mkin = derive2 { name="mkin"; version="1.2.1"; sha256="0k1c7rr8y12glg6n2lvhka2h7dipxjm3sjrav941l4lahpc60848"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild R6 rlang saemix vctrs]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; @@ -12484,49 +12556,50 @@ in with self; { mlergm = derive2 { name="mlergm"; version="0.8"; sha256="0bpdljmbn4lfm263jcsp0hrknixn49m7hqsx0jjk3pfwhgjlajh8"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="1.30.0"; sha256="1px2ww12gm10np6h9cnikjl3czix8v2hjkggzxckm4fvrlckh4g0"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr yaml zeallot]; }; - mlim = derive2 { name="mlim"; version="0.2.0"; sha256="04ssk3syx3cb5rcmycqfdssxcnp5nlnmnc58mr9bis129shhmvdg"; depends=[curl h2o md_log memuse mice missRanger]; }; + mlflow = derive2 { name="mlflow"; version="2.0.1"; sha256="1h70cg8xd434f2lwam2zbsjkzvavzz5yqg3wa9v0289h6vp0v5zb"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.2-1"; sha256="1jvra77xhf0a6qb2kb953inpg2lzv0y88kb6zzcw35bb8gipzm78"; depends=[abind car coxme gplots lme4 survival]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; + mlmhelpr = derive2 { name="mlmhelpr"; version="0.1.0"; sha256="1liqawmdz3a8jxnlbhxx9iz5nlybkyz7jr719y0xkqz4h741bj5s"; depends=[lme4 mathjaxr Rdpack]; }; mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; mlmtools = derive2 { name="mlmtools"; version="1.0.2"; sha256="1fwa0cwrrhzxr5zkvmf0q1w2wlrhj58lwmrvqxfn00v0v9d6bi0g"; depends=[ggplot2 lme4]; }; - mlmts = derive2 { name="mlmts"; version="1.0.1"; sha256="1j6yq4aj2kpqli6xk09ki1vrx91r2n5jasqhx361qp5rn8cn66h7"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-7"; sha256="0q8c5897z8f519nf6p55ksc610a9dbpnah2rr4srij4gs9a4clx1"; depends=[abind BMA maxLik]; }; mlpack = derive2 { name="mlpack"; version="4.0.0"; sha256="1wly4md76hm75c4vhvgmd3akc1py4f19s6c4rbpq41qn3sf5iqmj"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; mlpwr = derive2 { name="mlpwr"; version="1.0.0"; sha256="01kyyy3q7qd7wpccl1ibiq7fkbh552c6l4yflxvdy1j2fm8w5gic"; depends=[DiceKriging digest ggplot2 randtoolbox rgenoud rlist WeightSVM]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.1"; sha256="00jjhvaqifj6glqsyzixlp56bvlch5smck8kk3klcmwx9pasyllx"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.14.0"; sha256="0cnyby4947g1w0h45nd3ld5zr4k19xrwp565mq1hnqkjwmyjsgdj"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; + mlr3 = derive2 { name="mlr3"; version="0.14.1"; sha256="192hvc0may73m396j2igwm46ym6f345w6q0q69kqhia58fp6h3nd"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.4"; sha256="1h97fc2ffay6r2ql8py24kmw65pr9cxh11ni3i1bzllbn8skqrfn"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; - mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.4"; sha256="1infwd275j0jkm62nzzpblkn67hjsbpxw0l1plc4gz8p9q1gwjj5"; depends=[backports checkmate clue cluster clusterCrit data_table mlr3 mlr3misc paradox R6]; }; + mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.5"; sha256="049gxl66frhi0nhy0nlcbw5f969j5disln2cdj6sqdhz9hqjrm54"; depends=[backports checkmate clue cluster clusterCrit data_table mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.6.1"; sha256="1nbasjmn2lkrn00qw2dv9qc3d21fdc6nrrr8qagd5v5z2afy08zc"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.5.0"; sha256="0gvmn85sqn3klziy8nd726nim28cvfgdaddp4ilbq3v0jr745giz"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.1"; sha256="09ybdgp659fnv20cm427kd5pirhw28q3q5zxgy5k699frzwm5fgq"; depends=[checkmate data_table ggplot2 mlr3 mlr3measures mlr3misc mlr3pipelines paradox R6]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.6.0"; sha256="0v0jdgmdc7ihnpan1iqhldqd6qjpridaajnpzn2ga3bfl9g1nim0"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; - mlr3fselect = derive2 { name="mlr3fselect"; version="0.7.2"; sha256="102cv6is5wsj72i9ws1p5zzbv3rmgfhmj5g110n81vz0bqi0sz14"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; - mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.2"; sha256="1ybdbfsd7d8z8nhclrpp2by2yrfwfy1pgm2kbslqzvyhm7wpf038"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3learners = derive2 { name="mlr3learners"; version="0.5.4"; sha256="0sa2qjvhvjzsfssln9ah08zknzdcps1z28xzgkdfgi6dj25a0y3k"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3fselect = derive2 { name="mlr3fselect"; version="0.8.1"; sha256="1yilsw5vjmcr3v0mykxcgkl1qbkz8x20970bz0nk4diadfycd519"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; + mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.4"; sha256="02zyw4wir8gnqfv7g4b19ldfmnbxqgvbcnp744fcv67gigh8glsh"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3learners = derive2 { name="mlr3learners"; version="0.5.5"; sha256="0m5s7jfqfh48gxllvi93wb5w2pzhzx8rcx5bz87lkmv1cnj65q84"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3mbo = derive2 { name="mlr3mbo"; version="0.1.1"; sha256="0gm2waqp6mb2nf12rnwfyig9n9c2bxdyq4mhhray8cc6fcb100f0"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.5.0"; sha256="0k0i1xx63lds1870p2ljy1dlp2i376gdd0sq9s4xiqljqjb8va57"; depends=[checkmate PRROC]; }; mlr3misc = derive2 { name="mlr3misc"; version="0.11.0"; sha256="0haxj0zlflalw10nhdwmk45qsl164bgyjgnm101l2wybw795ixfi"; depends=[backports checkmate data_table digest R6]; }; - mlr3oml = derive2 { name="mlr3oml"; version="0.6.0"; sha256="1h7i0bczksv81gwyachcyv4wxfz02bm3j3i5azb0lykvrvfljkjh"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; + mlr3oml = derive2 { name="mlr3oml"; version="0.7.0"; sha256="1gg60x5ysnhlkgqqrqkgkxz3b55yfmlz45bx1x18rjwr4szal26j"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.4.2"; sha256="09pk3dwjcg5rbpwa1k21srdpvf2dlxq4b5p71cvkha85jx2gdgh6"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; mlr3spatial = derive2 { name="mlr3spatial"; version="0.3.0"; sha256="0b36mjk1y3vdrgrhvdmc0qd7l19b7k9qbgyns4w0711riqz37al4"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 sf terra]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.15.0"; sha256="13p0gcnl8sxvn3ig526pscl63g1dx7l5i9sfzi2yyrddg8vgik4g"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; - mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.3.1"; sha256="0c1m6cv6p54n3pd1li7ccpmcd830qshsw040swp2m8f75gklv8b1"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3verse = derive2 { name="mlr3verse"; version="0.2.5"; sha256="1mgspiibjbcv12vb2mqyj2n53vvmdqn8wcqcdhn6lzvblkpi2nbg"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; + mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.0.3"; sha256="0lxdg82fcgfb57f9n2rwriw43cx10103ymjmz8y6dpx5n006m3d8"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.17.1"; sha256="03habi7dm5xgwfb4zjn9nhvyym46qcljy31jz32fxalsap1mk9jb"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.3.3"; sha256="16yaah9zncl0daq453cl00mbpk9pvap8wv3myb5azj27v7pp1fb6"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3verse = derive2 { name="mlr3verse"; version="0.2.7"; sha256="0d8k5p3brhb1qxh6wwsqy6mfnlw2hipwqbqwpb0adwkqiwbnx520"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.5.10"; sha256="0bd7sgqfn4lkafzyrpjbgkm16hmzwlpl7yjkdjxxaj03g6dk7yf1"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; - mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-5"; sha256="0jbsy4ppq0l423fp8m7b0w5kslxmlslr2alm7k7x8s9fn3arnckl"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; + mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-6"; sha256="1xvfh5b1806ycdh8brnl63cd3fzr919sdi82acq5n59pz39fz4cc"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5.1"; sha256="16fwj7m28g4km7yalqppxmh3lw2jln0z072l6awia38qkdg6xwhc"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.0"; sha256="1nyaqf6vkckdh7jb27iwv5dnvrh4bp0kkc5jzbqkyi8af11phg1l"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; mlrpro = derive2 { name="mlrpro"; version="0.1.2"; sha256="1j8w8ji1n6cahcbyi1q4zq8gmhpcl15pb97f7bl1km29f4x4f272"; depends=[car dplyr MASS]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.2"; sha256="1icsssgi5xf420ajagr9nw0wgbxpfm7dsd5b7s77vyh5hsfzm1z3"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.4-2"; sha256="0ris1wfcyslbnn43b7s2p0nk01wzd5m3mm6dnzra73kgkjrdr8hz"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; + mlt = derive2 { name="mlt"; version="1.4-3"; sha256="06jkskmixzn70i7m0zj0rgqzknmrd6jnqrwadrhf7mva38rqvw99"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-6"; sha256="1ijfv3lwizk540g546pyi5i4sxcxwa3b2ylk0gsk68q5w704xpk6"; depends=[eha flexsurv lattice mlt multcomp numDeriv survival truncreg]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; @@ -12545,6 +12618,8 @@ in with self; { mmeln = derive2 { name="mmeln"; version="1.4"; sha256="0q5w3ajc1v798dyvryny2a0c52hzhxrjm4md08mqvww65pdzhqc4"; depends=[]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; + mmodely = derive2 { name="mmodely"; version="0.2.2"; sha256="1xbnivb5xvivz8by5hrr3g8g5w7yyw5n65jl1qhxf2lzvdr3prcw"; depends=[ape caper caroline]; }; + mmpca = derive2 { name="mmpca"; version="2.0.3"; sha256="1kzjwl0sn8cdgw3jw95lg90vgh47iw293ffn7c0fb9kgxisd6dma"; depends=[digest Rcpp RcppEigen RcppGSL]; }; mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; @@ -12566,10 +12641,11 @@ in with self; { mobr = derive2 { name="mobr"; version="2.0.2"; sha256="0dvsarxkjcjn3f40qkx5pdjpvq7hr6l5nvdz6adxlr1sdbadfcws"; depends=[dplyr egg geosphere ggplot2 pbapply plotrix purrr rlang scales tibble tidyr vctrs]; }; mockery = derive2 { name="mockery"; version="0.4.3"; sha256="0sj77m9vgn4bzb8c8nq93xb9lm8ih8rcb7sfccripraibibg3jcz"; depends=[testthat]; }; mockr = derive2 { name="mockr"; version="0.2.0"; sha256="0qxpyyg25ampjd6fjbhylzjfy15qng6w32yc17q5a2y6fz1scsy0"; depends=[rlang withr]; }; + mockthat = derive2 { name="mockthat"; version="0.2.8"; sha256="02j74gpppspf8ll3mvz879mnjm9wsj8dq5y3i0r8kzdizc6rxk3k"; depends=[rlang]; }; mod = derive2 { name="mod"; version="0.1.3"; sha256="0z5a6ps2m0cbw0n9kn44767m5jnbf1dl077i2p40fipv8xali9fb"; depends=[]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; mod2rm = derive2 { name="mod2rm"; version="0.2.1"; sha256="1adx8ndz299hzlljahvbv1px60dfchwh2ic6njr12k3zcm52rsby"; depends=[ggplot2 scales]; }; - modEvA = derive2 { name="modEvA"; version="3.5"; sha256="17rhp2i09ps04vz43k0drjwwsdx5g1615grrg1b0bf7gzbc5b9iy"; depends=[terra]; }; + modEvA = derive2 { name="modEvA"; version="3.8.4"; sha256="1vq028rn4d5hlkvdp2z7a95dglw6vp4xdaia7wsbkhy3fv41mqzq"; depends=[terra]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.3"; sha256="15ks5i7s19r4s9faxn36qlcf4y150b6xji970kxgilcgxvfqkgd8"; depends=[geometry lpSolve]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; @@ -12580,7 +12656,6 @@ in with self; { model4you = derive2 { name="model4you"; version="0.9-7"; sha256="0pni9v3nradvy8sp2m07903vc7z610xrh426lf19dxss12kgrfi8"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; modelDown = derive2 { name="modelDown"; version="1.1"; sha256="1l0aggkh0ykpqrp59bdz1cyl1ai397cw4hya80b7fm7s49imwczg"; depends=[archivist auditor breakDown DALEX devtools drifter DT ggplot2 kableExtra psych svglite whisker]; }; modelObj = derive2 { name="modelObj"; version="4.2"; sha256="0qj8ri7aw9lc7cc7rcs618bcbarcs29zgbz8l74s55qajvwpssg0"; depends=[]; }; - modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; }; modelStudio = derive2 { name="modelStudio"; version="3.1.0"; sha256="0hd3x5jnj3s4b0hahxzjxfclhr92adf1xhs7hgc1k8bm9ngnqqxm"; depends=[DALEX digest iBreakDown ingredients jsonlite progress r2d3]; }; modelbased = derive2 { name="modelbased"; version="0.8.5"; sha256="1fm5d94bck4vkp0lf6qfjbjg1561hapr2dq06g8hahfw9wq6ak3l"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; @@ -12590,10 +12665,10 @@ in with self; { modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; - modelr = derive2 { name="modelr"; version="0.1.9"; sha256="1jd9vxirj5ii4ac0ka07g0rcq1c8yqv06jg27nmvp5a6kvlgvs8h"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="1.1.0"; sha256="1hfrgl6crmznbx2mkr5grd87zrgx8m5j7zjyq89yr5g0n6gl9ka2"; depends=[broom checkmate data_table generics glue insight kableExtra parameters performance tables]; }; + modelr = derive2 { name="modelr"; version="0.1.10"; sha256="0qqgdb7gpb1h9lf5zijg51gd0qmbzj8f37aykhv1w633cglacick"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; + modelsummary = derive2 { name="modelsummary"; version="1.2.0"; sha256="0fcr1x1gjwhl46vikac2phms4ahlr1cpigj8p7kcdbhs9sc29drk"; depends=[broom checkmate data_table generics glue insight kableExtra parameters performance tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; - modeltime = derive2 { name="modeltime"; version="1.2.3"; sha256="0zb4q7m5wsism4n508hsya6ln0i14iclk6jy0l4cslz99lzb2v9q"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parallelly parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; + modeltime = derive2 { name="modeltime"; version="1.2.4"; sha256="11l4yysk5g4p0vh4h7dyqkzxa5cm3q3cjlimwhmbslfby36hki6x"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parallelly parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.2"; sha256="1yywl3vnc03wbz9fl3gq9cclvx8rsvnndyqb6d4ws9y5g60hnxhd"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; modeltime_gluonts = derive2 { name="modeltime.gluonts"; version="0.1.0"; sha256="1nivqpdyr2s6q70bixna0a18gbhrf1r20vm0gj8b51idjignwpp7"; depends=[dplyr forcats fs glue magrittr modeltime parsnip purrr reticulate rlang stringr tibble tidyr timetk]; }; modeltime_h2o = derive2 { name="modeltime.h2o"; version="0.1.1"; sha256="0rg7ha1zy0a1fbwrljsglfnfgkl747hjga8xajlzyrczhrmh4vnk"; depends=[dplyr fs glue h2o magrittr modeltime parsnip purrr rlang stringr tibble tidyr timetk]; }; @@ -12601,7 +12676,7 @@ in with self; { modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; modernVA = derive2 { name="modernVA"; version="0.1.1"; sha256="1kjfgr7fcf0w27gx1wwapxcw5wisfv75mq9qc5hjnaivmsnkwsv3"; depends=[]; }; - moderndive = derive2 { name="moderndive"; version="0.5.4"; sha256="0w4xj84f8dcq3ikxy3vhsyb85brsgcvnhzwawigh34mz64m7nhlc"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; + moderndive = derive2 { name="moderndive"; version="0.5.5"; sha256="0bgq6wsyyi6nsxqqh2k3zsmk64pfvb57z8pzk8ych3xih491hzlm"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; modesto = derive2 { name="modesto"; version="0.1.4"; sha256="12p5azbbng1hnvs5b86g85871dn5534iv7r6fw5v1iv1h1rcypcr"; depends=[markovchain Rcpp]; }; modgetxl = derive2 { name="modgetxl"; version="0.4"; sha256="0j9fmhy3wra9qr8753a495ligfz5fwgydv3ixlfzx3sgbq882hic"; depends=[DT readxl shiny shinydashboard]; }; @@ -12621,7 +12696,7 @@ in with self; { molaR = derive2 { name="molaR"; version="5.1"; sha256="1wqxyrsql36aqiwh0mcyv1ynbzn6p2was4wmaqrkpyxvnbl0f25y"; depends=[alphahull pracma rgl Rvcg]; }; molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; molnet = derive2 { name="molnet"; version="0.1.0"; sha256="1ha1jyh3mmbv2zgr2zrrjmslwd1gyy04hvqjk4d3ap2kna35wlgk"; depends=[dplyr igraph magrittr readr Rfast rlang stringr tibble tidyr WGCNA]; }; - mombf = derive2 { name="mombf"; version="3.1.4"; sha256="08ppgryb6wgnl333dsm1schpw9gzjcq0a70h43k1f7s4m6r6549i"; depends=[glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; + mombf = derive2 { name="mombf"; version="3.2.0"; sha256="1a20bx37fpvyaal7ld279grym1fjciqsh03qxl6mkdiz6lxq4as3"; depends=[glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; momentfit = derive2 { name="momentfit"; version="0.3"; sha256="0v6s6zpbz3sgna9fyjiinqmsyx4m1cd53rlkws9q2fscvwgfxjv7"; depends=[sandwich]; }; moments = derive2 { name="moments"; version="0.14.1"; sha256="0r6qf3i1rzh2822bx1p0h8mh91gsbgg6asl2rzh2l4ys094bilif"; depends=[]; }; @@ -12630,7 +12705,7 @@ in with self; { monaco = derive2 { name="monaco"; version="0.2.2"; sha256="109m9rvy39bp7j3jj8y6qdr4dran0qqvcx267mvil9c8ipxr89ms"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; monashtipr = derive2 { name="monashtipr"; version="0.1.0"; sha256="050xa9ghhf5xy76vndry7rhqn3hn0lhz6wjwz9vxk6mcfy5j2wq5"; depends=[glue httr lifecycle magrittr purrr rlang rvest xml2]; }; mondate = derive2 { name="mondate"; version="0.10.02"; sha256="18nsqldj1vvv882nh2dyilqvz1jbhqkz3q69cpjq1xfcj0z88qxz"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.6.2"; sha256="0xk49lsn8q9wm14zld1kmy0r4y7fzgj2av6sid9i43y7lr64dckg"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.7.0"; sha256="1n4mrzimk7i3jgdp0yxgs02ki76v5c8cnnfqy5zrxjrhgvhz4vq0"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; @@ -12662,11 +12737,11 @@ in with self; { mosaicCore = derive2 { name="mosaicCore"; version="0.9.2.1"; sha256="1yns15yxr6215xf9qsxfvl24a9zvh1chw49n31dql7fy1zr1dkmp"; depends=[dplyr MASS rlang tidyr]; }; mosaicData = derive2 { name="mosaicData"; version="0.20.3"; sha256="1s97yq24z7yhzmx0dpspfadpd8hndyhn7aiw0nslwrhvilhwa409"; depends=[]; }; mosaicModel = derive2 { name="mosaicModel"; version="0.3.0"; sha256="1gx4rzh0h922gyb50vz6q5vqqp5ry5hf2mq95948q2gcady91k5w"; depends=[caret dplyr ggformula ggplot2 knitr lazyeval MASS mosaicCore testthat tibble tidyr tidyverse]; }; - mosmafs = derive2 { name="mosmafs"; version="0.1.2"; sha256="04syr5qr91hyv1m5hfrjsriq0qgidaln06m7f3jgc1qyrni930rw"; depends=[BBmisc checkmate ecr MASS mlr mlrCPO parallelMap ParamHelpers smoof]; }; + mosmafs = derive2 { name="mosmafs"; version="0.1.2-1"; sha256="0xv9gf85d2fy9xdiik2dqd44xygsr6yr8fvmqkak1bpxnrkkb4hl"; depends=[BBmisc checkmate ecr MASS mlr mlrCPO parallelMap ParamHelpers smoof]; }; mosqcontrol = derive2 { name="mosqcontrol"; version="0.1.0"; sha256="199rkfisagr4kfx358f8yrbls00fng0kq8siyrbfwwf8qrba9fla"; depends=[assertthat magrittr NlcOptim nloptr pracma sfsmisc]; }; mosum = derive2 { name="mosum"; version="1.2.7"; sha256="1zixjf3s381d44s63qzz4hpx4cd2d3rgzvzgg75gpzfkvxnf5f8c"; depends=[plot3D RColorBrewer Rcpp]; }; motif = derive2 { name="motif"; version="0.5.2"; sha256="15jdx822iskn73b6pzcxvawkyn45dp5vqwk78g80fackn6vf3ry5"; depends=[comat philentropy Rcpp RcppArmadillo sf stars tibble]; }; - motifcluster = derive2 { name="motifcluster"; version="0.2.2"; sha256="011mm601z7l9114z1b8p05pcmaya28iqnbawbbgnr16y73ar1hpj"; depends=[igraph Matrix RSpectra]; }; + motifcluster = derive2 { name="motifcluster"; version="0.2.3"; sha256="1ynfjz9di1f1cm6bmx81a8mzkjkhclk21mx8b6css953dih06ngb"; depends=[igraph Matrix RSpectra]; }; motifr = derive2 { name="motifr"; version="1.0.0"; sha256="01synariq39mzhx12jbcpwn982piakakl97sgs33xa8xrbwzcxgm"; depends=[dplyr ggplot2 ggraph igraph intergraph network purrr RColorBrewer reshape2 reticulate rlang scales tibble tidygraph]; }; motmot = derive2 { name="motmot"; version="2.1.3"; sha256="09qsyc4ifdl316kjqqkarmflpjcd0ivkhx5fzi3502anj6dxpjnq"; depends=[ape caper coda ks mvtnorm Rcpp]; }; motoRneuron = derive2 { name="motoRneuron"; version="1.0.0"; sha256="1hdsf4c1v5hfaqpi5y1v60zqq5fdmlqdvzpsq77diclp9vzdshja"; depends=[dygraphs ggplot2]; }; @@ -12681,7 +12756,7 @@ in with self; { movecost = derive2 { name="movecost"; version="1.8"; sha256="0cd13w8lpzprwry12q2zq6s79v339dnh21lx1ivmkyd6va864mid"; depends=[chron elevatr gdistance leastcostpath maptools raster rgdal rgeos sp spatstat_geom terra]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpath = derive2 { name="mpath"; version="0.4-2.22"; sha256="0i4vyli3sr1lzrj0ayzsq55cpsv0xrwn216lgzmfyjr5n8r9aw7r"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; - mpathsenser = derive2 { name="mpathsenser"; version="1.1.0"; sha256="13l64fkvbhgsi1p1fjwybgagxhnwcrkgy26z4bpjfc3xhc7mjnww"; depends=[DBI dbplyr dplyr furrr future jsonlite lubridate magrittr purrr rjson rlang RSQLite tibble tidyr]; }; + mpathsenser = derive2 { name="mpathsenser"; version="1.1.2"; sha256="1ykaxkidkihqsv2mrb67gy1xmpsnr0byd9gng0d30m8wc5f827gk"; depends=[DBI dbplyr dplyr furrr jsonlite lifecycle lubridate magrittr purrr rlang RSQLite tibble tidyr]; }; mplot = derive2 { name="mplot"; version="1.0.6"; sha256="15cmwk4lphxy5p3azy9lwhij76127h9g4g1j1sv59mbqvrqid0sk"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps magrittr plyr reshape2 scales shiny shinydashboard tidyr]; }; mpm = derive2 { name="mpm"; version="1.0-23"; sha256="1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-4"; sha256="0gv9xswrfvndcjal0csab1w2cnl4rg8pznyxbz84b0qr95jg81ag"; depends=[vegan]; }; @@ -12700,20 +12775,19 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.6.5"; sha256="1zf4cf5zbw2wm4da7icwkdp0nb5aanjp578h26lsw7ac3nvmzpyd"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.7.1"; sha256="0k0jhssacy19l45pcypfg3g1cw9dz6fpf3dkgihx7pldyw4zfh5g"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; - mrds = derive2 { name="mrds"; version="2.2.7"; sha256="18cl5w3f7pwj74fbfa69qs06qs7fz7gnchfncv5mw7nxn17507g0"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mrds = derive2 { name="mrds"; version="2.2.8"; sha256="0pm3vn0cixkdafa789sfscf2zl3kxn192jp4h792n47k0w1add6x"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.2.0"; sha256="1gz19d4l0q3xd1w72ip6mhv20w8fgaaczkkdv40bflwabpxdy420"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.8"; sha256="16z610j01nf9k1hamsxydk2j6qdqpbyj29b5hm9r3fi8fm3smhd6"; depends=[data_table geojson geojsonio geojsonsf httr jsonlite rappdirs sf sp tibble xml2]; }; mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.13"; sha256="177331j30n707mcl1ghxjc53xjs9qsal15kccc71b0rabkjdq2wv"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; - mrfse = derive2 { name="mrfse"; version="0.4"; sha256="1kwnpmkrgc2ca90nszj4d1p04prv7rjd03qvk1bb2sclkfbhz4yp"; depends=[gtools Rcpp Rfast]; }; + mrfse = derive2 { name="mrfse"; version="0.4.1"; sha256="1kk6j7x4z4vaiwnd2mv2brzd1z7g4kyxxylxf31971i6klnsn4zb"; depends=[gtools Rcpp Rfast]; }; mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.2.1"; sha256="074c47fkwy5n9x89dswi3ybnck1f0rlbyad6by32jyslw8bz76ln"; depends=[callr dplyr fst future future_apply mrgsolve]; }; mrgsim_sa = derive2 { name="mrgsim.sa"; version="0.1.0"; sha256="199m6ygwnw6fbld5fqsw1j5jz9x6l1ayrpsc0r51q4fr7nmmpfj2"; depends=[assertthat dplyr ggplot2 mrgsolve patchwork purrr rlang tibble tidyr tidyselect withr]; }; mrgsolve = derive2 { name="mrgsolve"; version="1.0.6"; sha256="0hxwqi4gahsissjsyyxddxk02a81hf2wb81jwfd53pc7x9pp41nh"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; mri = derive2 { name="mri"; version="1.0.1"; sha256="1dssq556kid6c3djp0s6v853cranv2wjs2c9521l5ykg5g33hfmv"; depends=[]; }; - mritc = derive2 { name="mritc"; version="0.5-2"; sha256="07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; mrregression = derive2 { name="mrregression"; version="1.0.0"; sha256="1yy2sjs0b67bqyggzypp2g7x4fdmi86jx2nbcp2n7hcf9cdacysi"; depends=[data_table Rcpp]; }; ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; @@ -12729,7 +12803,7 @@ in with self; { msaenet = derive2 { name="msaenet"; version="3.1"; sha256="067p97z54dwhxy0w4ihi8dddcbvglh8ssynbh29fl9jyxfwjr1ms"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msamp = derive2 { name="msamp"; version="1.0.0"; sha256="0r5m50x8l5dijy7nzcbxl3ipfnkgvaa9r580b6b71ny3madsc8rh"; depends=[]; }; msce = derive2 { name="msce"; version="1.0.1"; sha256="1x9ivc2bjp07pdn15p3qds00m1m00amcg2dfcdjsgbkx9x1kkfab"; depends=[Rcpp RcppParallel]; }; - mschart = derive2 { name="mschart"; version="0.3.1"; sha256="1ryl221hl0ydpmfanhm3hk063kxvvzqfgwwz3ra37dgy1yamn1kq"; depends=[cellranger data_table htmltools officer writexl xml2]; }; + mschart = derive2 { name="mschart"; version="0.4.0"; sha256="0znylmkzqsk9qw640bhqnn4np748s9q1zcwgyavb3b808nfcv6ri"; depends=[cellranger data_table htmltools officer writexl xml2]; }; mscp = derive2 { name="mscp"; version="1.0"; sha256="18cy7nnvhpjl874bawsh8j1gry9wx134q6gk6j03s6546bzy8lgc"; depends=[]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; mscstts = derive2 { name="mscstts"; version="0.6.3"; sha256="1yqb9p7404yh9bjjjpy83k7yssvvpn3v9vddy47pgwjv4hbpbq19"; depends=[httr jsonlite tuneR]; }; @@ -12747,13 +12821,13 @@ in with self; { msir = derive2 { name="msir"; version="1.3.3"; sha256="1wm83m3cqd6llxb9p2jwim0wb81v84pgdmgcznygzaaq6kbn3n84"; depends=[mclust]; }; mskcc_oncotree = derive2 { name="mskcc.oncotree"; version="0.1.1"; sha256="1n79k3rp84r8j6paqshvingykszsw995fm7yxf1wl1jfp4hiyl4n"; depends=[dplyr glue httr2 magrittr memoise purrr readr rlang tibble tidyjson tidyr]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; - msm = derive2 { name="msm"; version="1.6.9"; sha256="08vhazswyxr3y1zb9y60mbg3bappzlizxml8s08p65mh82xxkz5f"; depends=[expm mvtnorm survival]; }; + msm = derive2 { name="msm"; version="1.7"; sha256="1c0dvmrjxx551n207fq4yjr56rdchaf1zzldxx4rx4b6g7jgi2bz"; depends=[expm mvtnorm survival]; }; msma = derive2 { name="msma"; version="2.2"; sha256="1p6lm07wlwyymhj2bpwn9kvxf6q2c6rf9554swnm8gkm1z82324f"; depends=[]; }; msme = derive2 { name="msme"; version="0.5.3"; sha256="0mq57zdas1s87nblnvbif9lisgahfhvmabglvp9imr1mvpwybpbh"; depends=[lattice MASS]; }; msmtools = derive2 { name="msmtools"; version="2.0.1"; sha256="09an9bpr0gnqbglb8kj4x8bb7f5dm2lc3d01wx6dh7j1d99vrrdk"; depends=[data_table ggplot2 msm patchwork scales survival]; }; msos = derive2 { name="msos"; version="1.2.0"; sha256="1fg9q6269cckn4g6isv22k22mzglxhjxjg5npqsikmisribmr9kb"; depends=[mclust tree]; }; mssm = derive2 { name="mssm"; version="0.1.6"; sha256="08bgfli7kvvsfpvlvlcdxp301gy6wggidlgllarxjwi06v9c8as5"; depends=[nloptr Rcpp RcppArmadillo testthat]; }; - mstDIF = derive2 { name="mstDIF"; version="0.1.6"; sha256="0zhslqzvvk8wbgqvcipmzhy94awwfmkv5yfl812m8wmwgpkcqzpb"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; + mstDIF = derive2 { name="mstDIF"; version="0.1.7"; sha256="0krb3g1njm97cnjjhc2p5r8djgnzarn5gm65x76h1k43qxfb5iw1"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.3.2"; sha256="054dzrd5b0xjjjl7862q3aq1jwgrxbkqz7zpvbdirqsld3zksirw"; depends=[data_table lattice RColorBrewer rlang survival viridisLite]; }; mstclustering = derive2 { name="mstclustering"; version="1.0.0.0"; sha256="1m2hmjia3r5ph5zl2314kq8dmjggzvw3ad8cixjjd70hi8570fpw"; depends=[data_table reshape2]; }; @@ -12765,13 +12839,14 @@ in with self; { mtb = derive2 { name="mtb"; version="0.1.8"; sha256="1xlm3s34y9g4g6nqzm7zwl08j6587qnzmr5xx0fwgiv5mr45jdz4"; depends=[data_table ggplot2 htmltools labeling scales]; }; mtdesign = derive2 { name="mtdesign"; version="0.1.0"; sha256="0fnyw6zcls12b6mmr9pxj3b9vs8pv1ik3h671kmxfgv1k6dwn6b9"; depends=[BH dplyr ggplot2 logger magrittr Rcpp rlang tibble tidyr]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; + mtlgmm = derive2 { name="mtlgmm"; version="0.1.0"; sha256="0q2nl9sk03w0x8khsgwycp1c66nbgrf88hdp6gys7fmvgmaz3yj9"; depends=[caret doParallel foreach mclust]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; muHVT = derive2 { name="muHVT"; version="2.0.0"; sha256="0zcmm2vjw1wak4xzfw3ikd94gd6knzm795183pl4vma0q0ll5bd2"; depends=[cluster conf_design deldir dplyr ggplot2 gtools Hmisc magrittr MASS patchwork plyr polyclip purrr reshape2 rgeos scales sp splancs tidyr tidyverse]; }; muRL = derive2 { name="muRL"; version="0.1-12"; sha256="1nzi0nyspva5ach0q0rvlljlfgmac8vxxggkwdzz1pr1cxhkprwd"; depends=[maps stringr]; }; muRty = derive2 { name="muRty"; version="0.3.1"; sha256="0v7wfb6347h4inf9jcbp6n4xfsqjzgj0i5sdfgqmbw0d5pcpnvhz"; depends=[clue lpSolve]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; mudata2 = derive2 { name="mudata2"; version="1.1.2"; sha256="0c8x39m7cy9l2r3ywbircgp79g7lmd37m2500z3icmkx6x6k6393"; depends=[dplyr fs ggplot2 glue jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect withr]; }; - mudens = derive2 { name="mudens"; version="1.3.2"; sha256="18kv8xfmmmk0dyw64lwrlrks0gana0s7gaff6nxs59ndgb1pj6yp"; depends=[Rcpp survival]; }; + mudfold = derive2 { name="mudfold"; version="1.1.21"; sha256="0bz0k490pda2a6lx9mmnpvnp6vrlyjd89bn05dsvqgbdfnyfs272"; depends=[boot broom dplyr ggplot2 glmnet mgcv reshape2 zoo]; }; mueRelativeRisk = derive2 { name="mueRelativeRisk"; version="0.1.1"; sha256="16yclfmgxc32pv00vyb9fjdh4syax8ynizr8a29haiq22q5fqclh"; depends=[]; }; muhaz = derive2 { name="muhaz"; version="1.2.6.4"; sha256="1ddy8ayr4rdhzcipdvxdwd7z5g9hfp0ppacl7xf6f2612cn1185g"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; @@ -12796,7 +12871,7 @@ in with self; { multiUS = derive2 { name="multiUS"; version="1.1.0"; sha256="077qyqfbp2r5ah08biiswn4jg03h2jcvi0gij6h5wip16vr0d0yx"; depends=[gplots MASS]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.1"; sha256="08vmdhrn6qqq57q818cqnmsw7qaa4gnw3m5myzp4dc85njgzzi02"; depends=[cluster dendroextras MASS Matrix plotrix rgl shapes tcltk2 tkrplot]; }; multiblock = derive2 { name="multiblock"; version="0.8.3"; sha256="0n1pyi3swq0hbabd2x5jp3jlnfjlbvpk09p0as61d34fwq97bs0b"; depends=[ade4 car FactoMineR geigen lme4 MASS mixlm plotrix pls plsVarSel pracma progress r_jive Rcpp RcppEigen RegularizedSCA RGCCA RSpectra SSBtools]; }; - multibridge = derive2 { name="multibridge"; version="1.1.0"; sha256="17xcngn6q2wgaxcspfigcvzp6zh2bq8vhmfb3gn9ryq1rf2fchfv"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; + multibridge = derive2 { name="multibridge"; version="1.2.0"; sha256="0akl9i3fhgd0pqsvgp7cv2l2l84cqc3cc4lambnjmwdyh7x4qcvd"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; multicastR = derive2 { name="multicastR"; version="2.0.0"; sha256="0zxv3kxk8gh2fgllzzg7k625n3p4q5pr465ja0mhvs48m4n262l9"; depends=[]; }; multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; multiclassPairs = derive2 { name="multiclassPairs"; version="0.4.3"; sha256="0mz15dl3fiznbnfjjmnhr9z6qh43mwafnkisd7svc3cb0lrbbjci"; depends=[Boruta caret dunn_test e1071 ranger rdist]; }; @@ -12822,11 +12897,12 @@ in with self; { multimark = derive2 { name="multimark"; version="2.1.5"; sha256="09i3djdpwwxjjr2lcb3ghgz09v4gplh8bd2yr70q032hvs7qb9c3"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.5"; sha256="0qxb67qss2pmid0wiwblqng5qmihqchdhbkyjklgj20pvbjz1wjm"; depends=[diptest ks rootSolve]; }; multimorbidity = derive2 { name="multimorbidity"; version="0.5.0"; sha256="1x4869pqckldx6g4zhawjbin03glkxzfszb4qiq7yy2xi444jkl0"; depends=[devtools dplyr lubridate magrittr rlang sqldf stringr tidyr tidyselect tidyverse]; }; - multinet = derive2 { name="multinet"; version="4.1"; sha256="0msmm43x2z0iz4zkmpiksv89035l61ivdrmf2zjinskb09adswzy"; depends=[igraph RColorBrewer Rcpp]; }; + multiness = derive2 { name="multiness"; version="1.0.2"; sha256="08bgjs2mrmsdvha10dr74262yk5ghyflvs8pqbl7bc8aws7lv8f5"; depends=[glmnet Matrix RSpectra]; }; + multinet = derive2 { name="multinet"; version="4.1.1"; sha256="1sfnj8nmfx741xkrds0xbn62ky383l8sir5apv9sbxk3ps108ha2"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; multinma = derive2 { name="multinma"; version="0.5.0"; sha256="0s7wybp56f102khxjvlmd55rm1yc728cgp948376vkj0lz4hnsvr"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; multinomialLogitMix = derive2 { name="multinomialLogitMix"; version="1.0"; sha256="0ckw4gn428awka282cx8ddk9p62yp5za0d8hj1qjnkkdphaqzfil"; depends=[coda doParallel foreach ggplot2 label_switching MASS matrixStats mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - multinomineq = derive2 { name="multinomineq"; version="0.2.4"; sha256="1xxndf4jrh6ds6bpdv833bj64xldfwyr5f3sdd859hwwg9wkdhnb"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; + multinomineq = derive2 { name="multinomineq"; version="0.2.5"; sha256="1lm5b3c8z6dqyipr9rwqsh0far4a9v9dfxdvrjlg0iyf723rr39k"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multiocc = derive2 { name="multiocc"; version="0.1.0"; sha256="1043cckddrr1sgnxd3fmj9kcgglmgw52lckxbzc91g6s7p9h7wgx"; depends=[fields interp MASS MCMCpack tmvtnorm truncnorm]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; @@ -12845,7 +12921,7 @@ in with self; { multivariance = derive2 { name="multivariance"; version="2.4.1"; sha256="1jbv1rhdy6jgvyhwz25hry3xmnxfsl8pwf0j4rj9r8rg6ik8rv1w"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-10"; sha256="1a469mhskkk2gx0j14f38fn0wdbfygl3psb0mnp7ckznhmh4w2lg"; depends=[emulator mathjaxr mvtnorm]; }; multiverse = derive2 { name="multiverse"; version="0.6.1"; sha256="0l3h4pg450brw27n0jhc3k5fsl57kczxsmzzs3ffj9lwrpnvvn7z"; depends=[berryFunctions collections dplyr evaluate formatR future_apply knitr magrittr purrr R6 rlang rstudioapi tibble tidyr tidyselect]; }; - multiview = derive2 { name="multiview"; version="0.4"; sha256="0yw4sn79rkw4sxpz25l1l153kbgm6wzg1cz51n38dm73y34k3y3y"; depends=[glmnet Matrix RColorBrewer Rcpp RcppEigen survival]; }; + multiview = derive2 { name="multiview"; version="0.7"; sha256="135krs4cz8d45jy6rqddq12jp8z1c2q3caw04h25839xxzamxcdl"; depends=[glmnet Matrix RColorBrewer Rcpp RcppEigen survival]; }; multiwave = derive2 { name="multiwave"; version="1.4"; sha256="19581kjcyw86cnzhvhhpn997fixm811ggmvb8jkb3dsxg8vp60jc"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-6"; sha256="1y9cykarr2aysdrnyab5aklsrc5id5b58881q03lcb5kc385v3gv"; depends=[CMLS]; }; multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; @@ -12866,6 +12942,7 @@ in with self; { mvGPS = derive2 { name="mvGPS"; version="1.2.2"; sha256="1aanrv84c012ijyqql0pw2qlckrpv3wmfv16yhr465xb3rkzz4vj"; depends=[CBPS cobalt gbm geometry MASS matrixNormal Rdpack sp WeightIt]; }; mvLSW = derive2 { name="mvLSW"; version="1.2.5"; sha256="0qg6bn0din22fns0cb4m0dfzgg0slrkfimpx7fslnvncfmx36h66"; depends=[fields wavethresh xts zoo]; }; mvLSWimpute = derive2 { name="mvLSWimpute"; version="0.1.1"; sha256="1caf843cf139f3fiy3nsq6g83xfz70c20zlfwk4pg5jv4rh0jiyg"; depends=[binhf imputeTS mvLSW wavethresh xts zoo]; }; + mvMAPIT = derive2 { name="mvMAPIT"; version="2.0.0"; sha256="0r4pg8m142l1qjm4hggrj0f9g3y927rbva8mj2q16bzdh6fbxbzd"; depends=[checkmate CompQuadForm dplyr foreach harmonicmeanp logging mvtnorm Rcpp RcppArmadillo RcppParallel RcppSpdlog testthat tidyr]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; mvMORPH = derive2 { name="mvMORPH"; version="1.1.6"; sha256="07hnpbc108x693wwx976ixi08q1n0siyz4ccv7024syrzf70ggxc"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.0"; sha256="0nfkcbi29fprz3mb7rrnn2rvixi4wmfmdsfsw219hj21vafk1bqz"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; }; @@ -12919,12 +12996,12 @@ in with self; { nLTT = derive2 { name="nLTT"; version="1.4.8"; sha256="10njdpz0dl3ckj4ph6hl4ppj1dyj8chrlmq6cl286ayqqqzj8qap"; depends=[ape coda testit]; }; nVennR = derive2 { name="nVennR"; version="0.2.3"; sha256="035gblc8427v0vq288rib3jfpz5fmcpvqg6nfaijwmbkz3gd41b6"; depends=[Rcpp]; }; na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; - naaccr = derive2 { name="naaccr"; version="1.0.0"; sha256="1hw74a2gjm3gxq0s0qlndhqw0vij6p31walz1ic741z7hqsffqq7"; depends=[data_table stringi]; }; + naaccr = derive2 { name="naaccr"; version="2.0.2"; sha256="1j30fb7qvxzpx0y7hq8sbqvszwjfnc4r2g0j8885fmn2wxvcgzdx"; depends=[data_table stringi XML]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; - nadiv = derive2 { name="nadiv"; version="2.17.1"; sha256="1v1fbnps55pbaz0q88y8vrxjd503krymc7f8i0xx3yxgdxl56x8q"; depends=[Matrix]; }; + nadiv = derive2 { name="nadiv"; version="2.17.2"; sha256="0v2jw0md4bjn15g6slx2bx7ipr3r0s1zv3frjach3rd7b1bs9z7k"; depends=[Matrix]; }; naflex = derive2 { name="naflex"; version="0.1.0"; sha256="18fqfhm6p38z4h8dznac5v8yz53n86cw2x6ma29kvcbvdp4r3yd2"; depends=[]; }; - naijR = derive2 { name="naijR"; version="0.5.0"; sha256="1z57r70iv3bbdc6v00wnfpcq7bjqgpcsqhnrswqbngp5xl83xz1w"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang stringi]; }; - naive = derive2 { name="naive"; version="1.2.0"; sha256="0kgj9dixrdmyl7vgc9a9kxmz751kgrh7rzy3sfs7ihnxdvd2yyp4"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr Rfast scales tictoc]; }; + naijR = derive2 { name="naijR"; version="0.5.1"; sha256="04wcdq0rw3may5hl7md31yiim730y6w5ly80bcdgjli9376qqkil"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang stringi]; }; + naive = derive2 { name="naive"; version="1.2.1"; sha256="10364ammzwhixz3s17f8vdag3zac0pwvcziy9z0ji19knyhdigmb"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr Rfast scales tictoc]; }; naivebayes = derive2 { name="naivebayes"; version="0.9.7"; sha256="070m78d8hsbqfbapb6g8vvh91gyznqfdpqsaq6z3raps8zlybsag"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.5"; sha256="1cxfl419pp7xh1xrad29gvpn6hm0rhk40vylj97ypndh6gmnynzz"; depends=[glmnet gmm grpreg ncvreg]; }; nakagami = derive2 { name="nakagami"; version="1.1.0"; sha256="0bxsg5k51x7qrw34l16da79ck212drkgvzgn9d5zanx5dwv5asl2"; depends=[assertthat]; }; @@ -12933,18 +13010,17 @@ in with self; { namedropR = derive2 { name="namedropR"; version="2.4.1"; sha256="06lg381imi8xnm6jlsxfffjyhzban6z29zwkw8bamglnk0frvzza"; depends=[bib2df dplyr htmltools lubridate qrcode R_utils readr stringr webshot]; }; namer = derive2 { name="namer"; version="0.1.6"; sha256="1h3nfxdhvjjiki1rqjpmiih9vj1hz9j8m5wkazskz8asza23898i"; depends=[cli dplyr fs glue magrittr purrr rstudioapi tibble]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; - nametagger = derive2 { name="nametagger"; version="0.1.1"; sha256="17g8y7x83p1pkgj5hgildndchxsp70va25h93p7r1yjllm56zqv8"; depends=[Rcpp]; }; + nametagger = derive2 { name="nametagger"; version="0.1.2"; sha256="1s3rsplia53cxqpxxkb7l7p56bkgvl5jcjcxgf1a8qaxxf5qngi5"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="0.6.1"; sha256="0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm"; depends=[dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR viridis visdat]; }; - nanonext = derive2 { name="nanonext"; version="0.6.0"; sha256="05naxc45y05w1x3qly3jqq8fs93z77vj950ggnlmvksp8nks6mdz"; depends=[]; }; - nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; + nanonext = derive2 { name="nanonext"; version="0.7.2"; sha256="0xnvnmph3wzdlw4hnwa73qiqdn1xyg12q21bkkk4r17cjilvjbz5"; depends=[]; }; nanostringr = derive2 { name="nanostringr"; version="0.4.0"; sha256="0df46pq93696xgdjky5qf5lk8caz48mb3a3fbrlda8z1rpv2i8bb"; depends=[assertthat ccaPP dplyr epiR forcats magrittr purrr rlang tibble tidyr]; }; nanotime = derive2 { name="nanotime"; version="0.3.7"; sha256="05fbdhbax6k1glidmgl0zjc7y7v1ppbpz4422q3jmxmfack7hwd7"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptanr = derive2 { name="naptanr"; version="1.0.1"; sha256="074pxm1c8k24b3gbn3ibbwpsixbmjq3wx9agxg3ljflny2s6hhqp"; depends=[data_table httr]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.6"; sha256="1vf8im4zs4j0v3k617aaskq9n2fg8sn3j5bllcbz2ircrpijr21m"; depends=[car Formula gtools MASS strucchange tseries]; }; narray = derive2 { name="narray"; version="0.5.1"; sha256="0vpx1fl24ba1c5x3bw0n8bx5yp77gsqybaxgbq6mj6by29ggq73l"; depends=[progress Rcpp stringr]; }; - naryn = derive2 { name="naryn"; version="2.6.9"; sha256="1ipgayb0fcnbaqd9jzkf1lnpvb2jcxjiz2yvzwk9a26iz88ja6pc"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr]; }; + naryn = derive2 { name="naryn"; version="2.6.12"; sha256="0lz0vcgp0llwr94234aqa7na0rl1120db8mga5wryp3hhs8w7qc1"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; nasapower = derive2 { name="nasapower"; version="4.0.8"; sha256="1f3hpbfkfqvfv23fajmica1wql8qjsr55m3mmzvmcwpz7hvlky0i"; depends=[crul jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; @@ -12960,7 +13036,7 @@ in with self; { naturaList = derive2 { name="naturaList"; version="0.5.0"; sha256="15kpv73a5bcjhnqp2q6fbw3wdwr3f1zijvaj60hybxv652p8b71f"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringr tidytext vegan]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; - navigatr = derive2 { name="navigatr"; version="0.1.2"; sha256="05gmi2i15gfz2sjkxrfdypih7wzqnw439l8glkc1zci0clk0qwkw"; depends=[cli dplyr pillar purrr rlang tidyselect vctrs]; }; + navigatr = derive2 { name="navigatr"; version="0.2.0"; sha256="0gx8rv56j1jc0jgsbbvfham2cb80419sghda1i9mz1b5i99igdk1"; depends=[cli lifecycle pillar purrr rlang stickyr tidyselect vctrs]; }; nawtilus = derive2 { name="nawtilus"; version="0.1.4"; sha256="1agqx9wiiypkpjrwahwlw5qkvqgkh01swyzc75csf9698x0779pm"; depends=[MASS]; }; nbTransmission = derive2 { name="nbTransmission"; version="1.1.2"; sha256="0vaj2zfyvm2vm1ly1419ysxxrqkv73802n96ifajknh1pair31zk"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbapalettes = derive2 { name="nbapalettes"; version="0.1.0"; sha256="1wrh2qcm90fcybhcc8wvs2s4a4z8y3mrhc28dvrkwynqwzsbalzs"; depends=[dplyr]; }; @@ -12974,9 +13050,9 @@ in with self; { ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.4.5"; sha256="1ymxb3av7vd7vljr8h3ga6v01z6nf5j9mc095z0hi31d1khwrd02"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29.1"; sha256="01352byijhwhcb7jji7bf5cm6v2yfz925f8wbivrx12x0c65fzw4"; depends=[]; }; - ncdf4 = derive2 { name="ncdf4"; version="1.19"; sha256="0qzvin2fjzcb7h2knlnw14s6043pwi1nm7yf6p27ax7w269173fb"; depends=[]; }; + ncdf4 = derive2 { name="ncdf4"; version="1.20"; sha256="1kpi5xygx1nj8ybxrn9z0jxi3lbcibdvc7mjgyvm6f9plwjlxjvq"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; - ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.3"; sha256="0218cv2jbb9n6wli8zlvmmqkiys09ccpphk506m8xqahq7w8ric7"; depends=[dplyr ncmeta RNetCDF sf stars]; }; + ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.4"; sha256="15sl701snp3pm5wjhiabvwfa0x0vdfzp8ks3b9j8vgc3vsj7dlid"; depends=[dplyr ncmeta RNetCDF sf stars]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; ncf = derive2 { name="ncf"; version="1.3-2"; sha256="1lqswih19g76aswnf6xygficzf7ri3yayqicifj8cqx8iwvrk91y"; depends=[]; }; ncmeta = derive2 { name="ncmeta"; version="0.3.5"; sha256="1w47dn04brqac98k5s8a88nh6d6qnkcilq3w4pfczbdff1rv2xlk"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; @@ -12984,19 +13060,18 @@ in with self; { ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; ncvreg = derive2 { name="ncvreg"; version="3.13.0"; sha256="04r7nf6516wi0bfxgk5rgbkw6qqa8aprsjivvgym19z9i6qaxanm"; depends=[]; }; nda = derive2 { name="nda"; version="0.1.6"; sha256="0pc0aiyx0lyyirgpd5g5syrnpm8pihsq0x1k0d7s05ibw5k9hq1g"; depends=[energy igraph leidenAlg Matrix psych visNetwork]; }; - ndi = derive2 { name="ndi"; version="0.1.2"; sha256="0h9asj7dgbl3kd3a3xvsi02jkh00wl80d17ankdw46yra9dwv9vh"; depends=[dplyr MASS Matrix psych sf stringr tidycensus tidyr]; }; + ndi = derive2 { name="ndi"; version="0.1.3"; sha256="0f24lfw9mzhdf2afjjzsh0bhlj2gwndry7pgd7i4s0497w26ycbl"; depends=[dplyr MASS Matrix psych sf stringr tidycensus tidyr]; }; ndjson = derive2 { name="ndjson"; version="0.9.0"; sha256="18j5bibranvbv84hvbsg6glmvhfancdsf2w6j99n3nw53bcgb12d"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; - ndtv = derive2 { name="ndtv"; version="0.13.2"; sha256="0symd0rwzk8kcq7f0flbw3pnyigybgsypjaaq5b5p1pjm1dz0c8j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + ndtv = derive2 { name="ndtv"; version="0.13.3"; sha256="05kaqd7p77rfls0s1gqv74j3svh5xdvqni0jin5vxl8y900yc56j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; neatRanges = derive2 { name="neatRanges"; version="0.1.4"; sha256="0673lg8mihz8xwh12q12wfn19w8vvnjb7pnz4x3cn2xhkyzwhxq5"; depends=[data_table Rcpp]; }; - neatStats = derive2 { name="neatStats"; version="1.11.0"; sha256="1vrpnd7xgp96rikjx50rh1mc3n2j6k86g0ax322s5ljlymwdh6sp"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; + neatStats = derive2 { name="neatStats"; version="1.13.3"; sha256="1fj042mwmmjza8giv0f2m7y11j8rnzrcmifyxrv4z9rfqddcvh2s"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; neatmaps = derive2 { name="neatmaps"; version="2.1.0"; sha256="1kz1na3fzpd8vkxmpp5rz8ksyf8q2wk456csiii82winv9a2zxc9"; depends=[ConsensusClusterPlus dplyr ggplot2 heatmaply igraph]; }; nebula = derive2 { name="nebula"; version="1.2.0"; sha256="1a4jsqxprp4pn7f5nxgha3jvjkcp7rdjlpcjwfc3f89530jhmnyv"; depends=[MASS Matrix nloptr Rcpp RcppEigen Rfast trust]; }; needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; - needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-12"; sha256="0b82822vl86gni0pv5f6pjfzmks35i7q2rqkhgyb9z9c677g991q"; depends=[]; }; negligible = derive2 { name="negligible"; version="0.1.2"; sha256="11x199xpsrydsy0iwyivhp43x79a4v6wfz60yd9l6a5vwpn26j2v"; depends=[DescTools dplyr fungible ggplot2 lavaan MBESS nptest rockchalk tidyr WRS2]; }; neighbours = derive2 { name="neighbours"; version="0.1-2"; sha256="0sz8xmghv71ry884nyxma9y7wiqx0n82f3v5iw13dlgzr6z66qcz"; depends=[]; }; @@ -13006,26 +13081,27 @@ in with self; { neo4jshell = derive2 { name="neo4jshell"; version="0.1.2"; sha256="0dkdg8ljyv7pi6zkpsq5akkl35vrhkr78xvc2ky99gwjsr0z77hf"; depends=[fs magrittr R_utils ssh sys]; }; neo4r = derive2 { name="neo4r"; version="0.1.1"; sha256="0s4rjhn2mc8ca4p8p474a83dc277vrf7l968xwxkiac0d4fgbra7"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; neonOS = derive2 { name="neonOS"; version="1.0.0"; sha256="11jgsf8c7rjfdbn9qljirzwvpnn4wckid4p4syx6py3dqjb4r19f"; depends=[curl data_table httr jsonlite]; }; - neonUtilities = derive2 { name="neonUtilities"; version="2.1.4"; sha256="1nx0d6r8ai3035rkk2s52q9kz1kg2w3cpcrqjk06f84wqd8cxyiv"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; + neonUtilities = derive2 { name="neonUtilities"; version="2.2.0"; sha256="0azzi8qybxfkrz4wmn7z2420jkq9z5klyqqdbs18w5zpr3x30hyy"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; neonstore = derive2 { name="neonstore"; version="0.4.4"; sha256="0fhjm6513kd4y3lry8dwcwk13ns92yk5h3san7ww2ahhdhy4hx9c"; depends=[DBI duckdb httr progress R_utils thor vroom zip]; }; nephro = derive2 { name="nephro"; version="1.3"; sha256="08gryzr53cd5gc8ks7v9jicgk4lxcwcr7zd8vzsqvy04sh3scw9i"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.2.3"; sha256="04d5rdcvnik9rj58npvs5z1r6ngs9hzc24wzix64czcynkkvkad0"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; - nestedcv = derive2 { name="nestedcv"; version="0.4.0"; sha256="160d1smwlf83m593n1jgx5qgzqzvj4zxqcxfwzdc1mx9gsng3mgq"; depends=[Boruta caret CORElearn data_table doParallel foreach ggplot2 glmnet hsstan matrixStats matrixTests pROC randomForest RcppEigen Rfast rlang SuperLearner]; }; - nestedmodels = derive2 { name="nestedmodels"; version="1.0.1"; sha256="1r0h520m98ys2bdam0gggzac7ij62f2i2s4d8v3y6p2jvz0kmkhd"; depends=[cli dplyr forcats generics glue lifecycle magrittr parsnip purrr recipes rlang rsample stringr tibble tidyr vctrs]; }; + nestedcv = derive2 { name="nestedcv"; version="0.4.4"; sha256="1zfdr42idrr7v76mkpvv58di8rqlw79c2k2pynfyaqxj3ac53dq0"; depends=[Boruta caret CORElearn data_table doParallel foreach ggplot2 glmnet hsstan matrixStats matrixTests pROC randomForest RcppEigen Rfast rlang SuperLearner]; }; + nestedmodels = derive2 { name="nestedmodels"; version="1.0.2"; sha256="065x6ggbn0naybbi5gjnyx2ryxg6062ya0fgj1k4sz3i2nrhjvwq"; depends=[cli dplyr forcats generics glue lifecycle magrittr parsnip purrr recipes rlang rsample stringr tibble tidyr vctrs]; }; nestfs = derive2 { name="nestfs"; version="1.0.2"; sha256="18w8bp02w7p1k0dm85523rhmsxww581ma4srvxbxq39kp8mfyabk"; depends=[dgof pROC]; }; nestr = derive2 { name="nestr"; version="0.1.2"; sha256="0qgd1sl6x5y70r3l4vf0qqynlrkdyq7mmpb8mwjn7f1hjnym1gaj"; depends=[magrittr rlang tidyselect vctrs]; }; net4pg = derive2 { name="net4pg"; version="0.1.1"; sha256="1a00bqskgl053wcwgmg7xsccybrq76bqaipdnf5zbm1dslir0jdv"; depends=[data_table graph magrittr Matrix]; }; netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; netCoin = derive2 { name="netCoin"; version="2.0.20"; sha256="1kmv8sfzyh7cgp4s86rw4znjqpckgw8xiqs6a144g7k2vlfm28fk"; depends=[haven igraph Matrix rD3plot]; }; - netSEM = derive2 { name="netSEM"; version="0.6.0"; sha256="0f8d9lw2ahap8i4dcl7039q4959wpq7d8h5n3kz5kwylmkf70lmh"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; + netSEM = derive2 { name="netSEM"; version="0.6.1"; sha256="01yhqlax9vyhipw5cjg2mg9cbxj44g7mxlrsfa4mfsw22bd6dc6i"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netShiny = derive2 { name="netShiny"; version="1.0"; sha256="1k6dmhkjf29ww31c15jms0yxwyiqq1z7a9115zwbg620cjd3m6fm"; depends=[colourpicker DT future future_callr ggplot2 ggVennDiagram igraph ipc magrittr Matrix netgwas plotly promises readxl shiny shinyBS shinycssloaders shinydashboard shinyjs shinyscreenshot shinyWidgets visNetwork]; }; netUtils = derive2 { name="netUtils"; version="0.8.0"; sha256="02ik399hq58lfy2l4rhc21kkfcjkzycgjhdhgrvycn34gkw3ahjl"; depends=[igraph Rcpp RcppArmadillo]; }; netassoc = derive2 { name="netassoc"; version="0.7.0"; sha256="0hbyg31r9sjp0dyxlbsbw7r1kb1dwr0apilsw8saf1vlqwsiasga"; depends=[corpcor huge igraph infotheo vegan]; }; netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; - netcmc = derive2 { name="netcmc"; version="1.0.1"; sha256="06484f7i0rf7p6c6i3g1kshbnm6h30qj4xjryjmxcm7yy09m9hdb"; depends=[coda ggplot2 MASS MCMCpack mvtnorm Rcpp RcppArmadillo RcppProgress]; }; + netcmc = derive2 { name="netcmc"; version="1.0.2"; sha256="0w5xnnfglg0nm59wwqh2dpwkz0zlly3r2997wncf5whz5j4vcy88"; depends=[coda ggplot2 MASS MCMCpack mvtnorm Rcpp RcppArmadillo RcppProgress]; }; netcom = derive2 { name="netcom"; version="2.1.6"; sha256="1i9d7w497qqjkwqvskbm1k5jj03pf84am8jifhhmxmmvd9sk6ldw"; depends=[clue doParallel dplyr expm foreach GenSA ggfortify ggplot2 ggraph igraph magrittr Matrix optimx pdist pracma reshape2 rlang tibble vegan]; }; netcontrol = derive2 { name="netcontrol"; version="0.1"; sha256="1gskb728ycnhz9a9g9ghm0dz3ajf3dzgyv23bsk9i01wj9hrxhc0"; depends=[expm MASS Matrix pracma Rcpp RcppArmadillo Rdpack]; }; + netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.5"; sha256="1brcqkxvc7h015hgmxff4449zvgzl7rx6lm52x0hchc6zjb0fi16"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; }; netgsa = derive2 { name="netgsa"; version="4.0.4"; sha256="02127r3vskcksrd893qrs1wqwkbw3b8p33ybgvbwd9j4lxgifmr2"; depends=[AnnotationDbi corpcor data_table dplyr genefilter glassoFast glmnet graph graphite httr igraph jsonlite magrittr Matrix msigdbr org_Hs_eg_db quadprog Rcpp RcppEigen RCy3 reshape2 rlang]; }; netgwas = derive2 { name="netgwas"; version="1.14.1"; sha256="07nq2pb031grq7g4ysk9pk05dvn3x7cq2l9vdsggi1jvyv5fr4vv"; depends=[glasso huge igraph MASS Matrix qtl tmvtnorm]; }; @@ -13033,7 +13109,7 @@ in with self; { netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; netmap = derive2 { name="netmap"; version="0.1.1"; sha256="0cqfxpn3pcbh56a26azxzm896g1m0z289870gb79n5nz69wm7dci"; depends=[ggnetwork igraph network rlang sf sna]; }; netmediate = derive2 { name="netmediate"; version="0.1.0"; sha256="1jk8knnqi59sfkpfaqi42y416j0qvmjy7ghjm2kkf2wvxwmym3q0"; depends=[btergm ergm ergMargins gam intergraph lme4 MASS network plm plyr RSiena sna VGAM]; }; - netmeta = derive2 { name="netmeta"; version="2.5-0"; sha256="07fr06za4k57kr84ni35gbfjwaxdfgrf9jpds7nlmkwhwybm4462"; depends=[ggplot2 magic MASS meta metafor]; }; + netmeta = derive2 { name="netmeta"; version="2.6-0"; sha256="1xihabkyv5hljyklmsi2h2w63yngibkbfv595r9nfgyp4b9pgslp"; depends=[ggplot2 magic MASS meta metafor]; }; netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; netplot = derive2 { name="netplot"; version="0.1-1"; sha256="11s6gcxcwbnd5x3sb4ryi4ks1bsbf7ylgc0yrygv58ipisxb2780"; depends=[igraph network sna]; }; netrankr = derive2 { name="netrankr"; version="1.2.0"; sha256="1b6wcvwqyqjfi1v8k8bf0ydsiyizpcgy47jf4z6v50sj22lwvxpn"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; @@ -13042,6 +13118,7 @@ in with self; { nets = derive2 { name="nets"; version="0.9.1"; sha256="00adkyd2hm8aynpnk4avzss8fxkbaai74n5cf03vpwyc306jq0d7"; depends=[igraph]; }; netseg = derive2 { name="netseg"; version="1.0-1"; sha256="075qm8z8i2l1q3s22ql55ih752b2n5gnmhkmgbd7qa44zkf3rj0w"; depends=[igraph]; }; netstat = derive2 { name="netstat"; version="0.1.2"; sha256="0d26w0xyi5645132bxybsy8zadfcfifbwp5s22r0cnd546czjvz8"; depends=[]; }; + nett = derive2 { name="nett"; version="1.0.0"; sha256="1prb1zskhc50jzqmh1cdk4lljr4xqp4aaaaw1r66hmpy0d9ghhph"; depends=[foreach magrittr Matrix Rcpp RcppArmadillo]; }; nettskjemar = derive2 { name="nettskjemar"; version="0.1.4"; sha256="0cghjk9hw3m0b6xalqg0p7v60jvshcfy6z5sfl4p2z6y17pkf72b"; depends=[dplyr here httr jsonlite pbapply purrr rvest tidyr usethis xml2]; }; network = derive2 { name="network"; version="1.18.0"; sha256="0nyf8i94lnqm4gfjz1szbwvl4c438xg3rjdkqr18fz68fh0v3x2r"; depends=[magrittr statnet_common tibble]; }; networkABC = derive2 { name="networkABC"; version="0.8-1"; sha256="0754770z3db7faadh8bxk0h70frjk6v8zjklkhclxnach1vag2k6"; depends=[network RColorBrewer sna]; }; @@ -13071,22 +13148,22 @@ in with self; { newsmap = derive2 { name="newsmap"; version="0.8.1"; sha256="0r7ldw78wi66li6xgski5g0fa0sfwya6jw79ag06i9zgnzmswd85"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.4.0"; sha256="1pzsblkvs374nc6795llm9lbqj5z410g1mgr3q4fgpm0398zmsrv"; depends=[R6]; }; nextGenShinyApps = derive2 { name="nextGenShinyApps"; version="1.5"; sha256="1zj37yqrnxzlrjz8bcrskfl11ql1q27mfffx3342gllkfmpgd8vp"; depends=[htmltools shiny]; }; - nfer = derive2 { name="nfer"; version="1.1.0"; sha256="0kl7yks8m7ylm3vlmffjy1fgjchf4pym49jgpnq9jbkysvvbxpb0"; depends=[]; }; + nfer = derive2 { name="nfer"; version="1.1.1"; sha256="0g54jfy6cdzd9kamyqqcyx1v9pml2vzyi8jfmdpnw8r0jj6n7x2l"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.2"; sha256="0dx5ipnfnsii0imnxsi3vyfvihfdg0sim5vhpchi0ggcnjpqm3k4"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; - nflfastR = derive2 { name="nflfastR"; version="4.4.0"; sha256="0nbizfrc0cv9vi8izjc8r15jq4pyrxd0av37kycxfqmb6kr8z8ax"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; + nflfastR = derive2 { name="nflfastR"; version="4.5.0"; sha256="0q88csinbns5khcnls891j3a8npskjr47g0rcqk5bxrr51p9i5yg"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; nflplotR = derive2 { name="nflplotR"; version="1.1.0"; sha256="13ibhri9x5k4waay230s2xhc9i8qm51glq0bgdc1ily8grgrxhgs"; depends=[cachem cli data_table ggplot2 magick magrittr memoise nflreadr rappdirs rlang scales]; }; nflreadr = derive2 { name="nflreadr"; version="1.3.1"; sha256="1zh5dhj6fv7f1x36k597qwi28csbvvj4n6dgpsqzx0al0b0na44v"; depends=[cachem cli curl data_table glue memoise rappdirs rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.1.0"; sha256="16qpmhb9i220blihy6r8ak9rf3pb228q305qszz57zkz1hhk0508"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr nflreadr progressr purrr readr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.2"; sha256="00mjclyf0ph2wi3jbbxyhgckj9kppm8xhy10z5n6kskyw4wnvab0"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; nftbart = derive2 { name="nftbart"; version="1.4"; sha256="1xg3p2bi4j6ijg20kj1wp3alrd8bnda02fk50vm5k507wcxf4473"; depends=[nnet Rcpp survival]; }; ngboostForecast = derive2 { name="ngboostForecast"; version="0.1.1"; sha256="019l9w7m6lkbf0m9mlsd24agjasbzi7dmy72faq1s4xg49a5xa9a"; depends=[dplyr forecast magrittr R6 reticulate]; }; - ngram = derive2 { name="ngram"; version="3.2.1"; sha256="1zjp5gn82b733a0glqrpvm1rqmqk0apni9fbm0jszbnc3y9h478z"; depends=[]; }; - ngramr = derive2 { name="ngramr"; version="1.9.0"; sha256="1imvfawavrr83bnmhwwr5icm43f7nmr77nwsz262zh39s4a55f4z"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; + ngram = derive2 { name="ngram"; version="3.2.2"; sha256="04cafc0i3605vlxmiwfyf91572ppg3wmm0hi50y9x7ai12bznchc"; depends=[]; }; + ngramr = derive2 { name="ngramr"; version="1.9.1"; sha256="0vvlml9s6v5vix1h723bs3mbz6cpa2mv4gbh0mqvfxssba7ki05i"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; nhanesA = derive2 { name="nhanesA"; version="0.7.1"; sha256="0mjcb26irvhqsicnnhx8w32gx9w50jw0rwm2x33wvdf0qy42gzdw"; depends=[foreign magrittr plyr rvest stringr xml2]; }; nhdR = derive2 { name="nhdR"; version="0.5.9"; sha256="0zgcsj7469dpmfda62322yxamq9lahl3d9nxizdp48kh0xrmx8pl"; depends=[curl digest dplyr foreign ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; - nhdplusTools = derive2 { name="nhdplusTools"; version="0.5.7"; sha256="00xr2s1ih86kfbxihqaar1drqqy6n967sxq19k669d0dg0r3pjzq"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rosm sf tidyr units xml2 zip]; }; + nhdplusTools = derive2 { name="nhdplusTools"; version="0.6.1"; sha256="063vskxilrhx801cgp7hl8w81k4qig6hsyj9xlfdzjjrhyan31pi"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rlang rosm sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; @@ -13097,16 +13174,17 @@ in with self; { nic = derive2 { name="nic"; version="0.0.1"; sha256="0nr84a0vvl682ahp9xq50y6mk5dsircgz4l2rqp0jgv2h7fkd0n2"; depends=[]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.1.0"; sha256="0chg2bnz929mq17qylf3f57g6bg4ih6w20019yh7vkz7mwjnvi3p"; depends=[]; }; + nieve = derive2 { name="nieve"; version="0.1.1"; sha256="10g3krcjzyjqhw6wdyk8ck009jalav1ybla93klzr894ildl1agh"; depends=[]; }; nifti_io = derive2 { name="nifti.io"; version="1.0.0"; sha256="03p0gn6id5bkn0qxf7v3splykpi9wpbasrhf2937gp25bsynrpjm"; depends=[]; }; nightmares = derive2 { name="nightmares"; version="0.0.2"; sha256="1dmqrb17ncwazy1nb0zzfy7fq51ah7rz0xmhmmx6d30paaix2vc7"; depends=[raster rgdal sp]; }; nilde = derive2 { name="nilde"; version="1.1-7"; sha256="014scmwhq9i66i2mhvrb71y6ccv0xzjqfgm2sqff9lzjv9smy2im"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; - nimble = derive2 { name="nimble"; version="0.12.2"; sha256="06qs22q0l1iv82q5q48f5hpn0jxy8pds378k9cxhnzws2nms7xra"; depends=[coda igraph R6]; }; + nimble = derive2 { name="nimble"; version="0.13.0"; sha256="06y745jch8glixnxcgxi1dcawk8xz2gjjl4zb8c23xwfwa5lxp36"; depends=[coda igraph R6]; }; nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.2.1"; sha256="1dzkc0ay617a1l6m919sqxfcnx0z9kwfykn11f9hz6ddf4wgkysm"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; nimbleNoBounds = derive2 { name="nimbleNoBounds"; version="1.0.1"; sha256="0ac35ylwbgsw261l84fv11mnddrqxzdyvv1f9nk73jxv102z0ihj"; depends=[nimble]; }; - nimbleSCR = derive2 { name="nimbleSCR"; version="0.2.0"; sha256="19y93cvnp3x4jnff4210fc1cp04mv0mnm1as6svsp8swizm2sb95"; depends=[nimble]; }; + nimbleSCR = derive2 { name="nimbleSCR"; version="0.2.1"; sha256="1gyc93isivvq0b8fv4pb2g3mpr1n7jfpj9bs86a417iwbf34x4a4"; depends=[nimble]; }; nimbleSMC = derive2 { name="nimbleSMC"; version="0.10.1"; sha256="1bxm729v40zd9gflllp8plj7gk325mc4gdlmsvkrgp31rslkxx76"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; nipnTK = derive2 { name="nipnTK"; version="0.1.0"; sha256="0imy2x1h9d842ssw7hmmh21c4mj7s6y05mmjin1270skbnrk2zmr"; depends=[bbw withr]; }; @@ -13119,6 +13197,7 @@ in with self; { nlaR = derive2 { name="nlaR"; version="0.4.0"; sha256="05ipw2j4w5r3bpmhqh742yqz5qihx36jnsq08bli8jwsqha9vm8h"; depends=[rappdirs]; }; nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; nleqslv = derive2 { name="nleqslv"; version="3.3.3"; sha256="0cy65bqkmnnr8v0x1cag84caxwdxyr0yw4w443apxzfxjp7dyiif"; depends=[]; }; + nlgm = derive2 { name="nlgm"; version="1.0"; sha256="03byqqj8ayq7hbaab4cfrk0nbxmiiq2c2i98szfydzkimhrw922a"; depends=[ggplot2 Rfast Rfast2]; }; nlist = derive2 { name="nlist"; version="0.3.3"; sha256="1wq7bp834c7cl37wbrgd9ars3mm0s5c3l3fxlrry728a27c27f9h"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; nlive = derive2 { name="nlive"; version="0.1.0"; sha256="03nxazkb0ndriafh28dfqmyrzcpxa0fqflnlpbkjaa83g4im75j3"; depends=[dplyr ggplot2 knitr lcmm nlraa Rmisc saemix sitar sqldf]; }; nlme = derive2 { name="nlme"; version="3.1-160"; sha256="024a1pfdbv5dp1cbfk424n1rwfxw4g92yrjcfy1v0xj834ilcifl"; depends=[lattice]; }; @@ -13126,9 +13205,11 @@ in with self; { nlmeVPC = derive2 { name="nlmeVPC"; version="2.5"; sha256="0jrbwai8q3qvr6zm5q8pn89gslh2kp2sddwkggcjisjcri3cny9f"; depends=[ggplot2 Hmisc optimx quantreg Rcpp RcppArmadillo timeDate]; }; nlmixr2 = derive2 { name="nlmixr2"; version="2.0.8"; sha256="14akzman4r99ynkdpif0y6fjgxahbha5bk49g59924azwnhin7hd"; depends=[lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; nlmixr2data = derive2 { name="nlmixr2data"; version="2.0.7"; sha256="06wchhd5rg76vws8lvh5yf8cia7d09ds61h9zizqk7j9azkx004j"; depends=[]; }; - nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.1"; sha256="0bnm7zgbzarwj4xbimivpnxmxqih3h52c4hyb6wz1816z35cs8lc"; depends=[backports BH checkmate cli dparser knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo RcppEigen rex Rvmmin rxode2 rxode2parse rxode2random StanHeaders symengine ucminf vpc]; }; + nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.3"; sha256="1mxax6r5zlj96a5khfq4q7ksgzq577axll1aniqa76d1j9vjm5nq"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo RcppEigen rex Rvmmin rxode2 rxode2parse rxode2random StanHeaders symengine ucminf vpc]; }; nlmixr2extra = derive2 { name="nlmixr2extra"; version="2.0.8"; sha256="1sxbkqwhj6lg49c3ah4kylvak1lgj2was6mqsh82klvp72fd61fd"; depends=[checkmate cli crayon data_table digest ggplot2 ggtext lotri nlme nlmixr2est Rcpp RcppArmadillo rxode2 symengine]; }; + nlmixr2lib = derive2 { name="nlmixr2lib"; version="0.1.0"; sha256="12nzkhz68kw4k21bgmp7w9dhcwq7q7lz09riambgyr8gqbmvzn3s"; depends=[checkmate cli nlmixr2est rxode2]; }; nlmixr2plot = derive2 { name="nlmixr2plot"; version="2.0.7"; sha256="0bpb9pxdjpwg3kqldbmw8vlq2w843dgyv0q13265kbcpwqhqmnma"; depends=[ggplot2 nlmixr2est nlmixr2extra rxode2 vpc xgxr]; }; + nlmixr2rpt = derive2 { name="nlmixr2rpt"; version="0.1.0"; sha256="0imkjshj2cibxs0zqddwfizpdf7v4b74m5p813j2laaydfnnlkyr"; depends=[cli dplyr flextable ggforce ggplot2 ggpubr nlmixr2extra onbrand rxode2 stringr xpose xpose_nlmixr2 yaml]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; nloptr = derive2 { name="nloptr"; version="2.0.3"; sha256="1mqnjswm0dl6vqc8b2s5k3n1mhanaha3l33vh68dh6zx8q9aq9kv"; depends=[testthat]; }; @@ -13160,7 +13241,7 @@ in with self; { nmslibR = derive2 { name="nmslibR"; version="1.0.6"; sha256="1biaaifcnzjpj6prq04avgfz29n1v65kgpir8jrg4ndb6krjwh94"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; nnGarrote = derive2 { name="nnGarrote"; version="1.0.4"; sha256="0km7vx9qkfijj2af5ma4q88mhgkrw361hpv3n8dyzpr8654hrw4v"; depends=[glmnet]; }; - nnTensor = derive2 { name="nnTensor"; version="1.1.8"; sha256="12f2mfkzamrjd9yjgrljbw5y1jg5805pc8371zs7qfn6bganmhv8"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; + nnTensor = derive2 { name="nnTensor"; version="1.1.10"; sha256="16lv17dgzyb5jgsl1j50q84jv78ppnfwk5hm7y4m9962c2dyqw33"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nncc = derive2 { name="nncc"; version="1.0.0"; sha256="1kgsz28j4ra0x3i8454fjmil7g62r2mjvnbljcp008q4slnp47sv"; depends=[cluster dplyr formula_tools furrr ggplot2 igraph mgcv mice rlang tidyr]; }; nnet = derive2 { name="nnet"; version="7.3-18"; sha256="1l73v6l9ma0vsg4za3c6i3d6yjj7bpdmakbmrzp7205hbkxyp6nj"; depends=[]; }; @@ -13175,7 +13256,7 @@ in with self; { noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; noctua = derive2 { name="noctua"; version="2.6.0"; sha256="17j23sjr0wf9jipc12piq51w7drdm84qqd7jp4mvkym3lg4d19yb"; depends=[data_table DBI paws uuid]; }; - nodbi = derive2 { name="nodbi"; version="0.8.1"; sha256="0zslvf2hivc1hfp6c9sijc12mzdxy0byrhcs74f2bf0q0v9vcmx6"; depends=[DBI elastic jqr jsonify jsonlite mongolite RPostgres RSQLite sofa stringi uuid]; }; + nodbi = derive2 { name="nodbi"; version="0.9.1"; sha256="1hn0wy2ry9l3wwqrshmf82cxigkm16wycwprv458bcvb5k6ayy5m"; depends=[DBI jqr jsonify jsonlite stringi uuid]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; nodeSub = derive2 { name="nodeSub"; version="1.2.5"; sha256="11a744gdfb2lwya01g1gg4165f692hjwym40r0rdi1y4l0jk8l8h"; depends=[ape apTreeshape assertthat babette beastier beautier DDD geiger mauricer pbapply phangorn phylobase rappdirs Rcpp Rmpfr stringr testit tibble tracerer]; }; nodiv = derive2 { name="nodiv"; version="1.4.0"; sha256="1k7pr9d1mgxw3szxcmnkkz498x7629wf2z65qlclywka3xgzpkxc"; depends=[ape picante raster sp vegan]; }; @@ -13187,7 +13268,7 @@ in with self; { noisySBM = derive2 { name="noisySBM"; version="0.1.4"; sha256="1zdkxr48kvpqs49figxxznq3d45nalja92lyal71m066s1blc6dg"; depends=[ggplot2 gtools RColorBrewer]; }; noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; nombre = derive2 { name="nombre"; version="0.4.1"; sha256="16hpr628j8rzxg5k71qsgc9xhz1w4gpi3fry5vp1mbwvalmlish2"; depends=[fracture]; }; - nomclust = derive2 { name="nomclust"; version="2.5.0"; sha256="17vqxbx5bpja2fxp83w0sbgbs61b2vaak9zzvvxkicxqwk09ix2v"; depends=[cluster Rcpp]; }; + nomclust = derive2 { name="nomclust"; version="2.6.2"; sha256="16pxv2vqikias18835crjfx5yignckvrw4imwqi18463mg6y7v9b"; depends=[cluster Rcpp]; }; nominatimlite = derive2 { name="nominatimlite"; version="0.1.6"; sha256="1zzlqhn26bgag2sjq57crldyw0q0cs56l6c69xqp15w88022d32q"; depends=[dplyr jsonlite rlang sf tibble]; }; nomisr = derive2 { name="nomisr"; version="0.4.7"; sha256="0mf301nhsl71h79jxfkwa27j5nifsxp7y6vxbnx87rybr80b3hg1"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; nomnoml = derive2 { name="nomnoml"; version="0.2.5"; sha256="1c1pv3c1s6cdc75malnhy69cc9za3hmikd46d35x1n2ww54lmldc"; depends=[htmlwidgets lifecycle png rlang webshot]; }; @@ -13211,7 +13292,7 @@ in with self; { nor1mix = derive2 { name="nor1mix"; version="1.3-0"; sha256="1817wcvlmxs70vs4db0jkxd7i037744zz8ay3c2a9949z29fxr4w"; depends=[]; }; nord = derive2 { name="nord"; version="1.0.0"; sha256="1gisqca85vzbqq5hs5bgqjgrjyksxj176x97kv9vv6mwll8kijl9"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; - norgeo = derive2 { name="norgeo"; version="2.1.1"; sha256="08arc9hkya2ckqp603ppxp6akfdwwgy2l2x6vcqw4saf9b2anzpy"; depends=[data_table DBI httr jsonlite magrittr odbc RSQLite writexl]; }; + norgeo = derive2 { name="norgeo"; version="2.1.2"; sha256="0ac0qc3vg012ndk8c50xma636k32mzhd7z9i434d1d6iz2fy3gn9"; depends=[data_table DBI httr jsonlite magrittr odbc RSQLite writexl]; }; norm = derive2 { name="norm"; version="1.0-10.0"; sha256="1iqcsa7mj9ahnkbsri0cf2wlhh2bv86vwsh3iwihh42cywd7k123"; depends=[]; }; norm2 = derive2 { name="norm2"; version="2.0.4"; sha256="0ahz6x59k00pqalzjc3ajiby1ysmarjssga9amwh9vd6vmzzyfb7"; depends=[]; }; normalizeH = derive2 { name="normalizeH"; version="1.0.0"; sha256="19lychfrv57yk245rzais4hx17csz1s6wm5vk6p7ypr6h9slf2cq"; depends=[]; }; @@ -13236,13 +13317,14 @@ in with self; { nparcomp = derive2 { name="nparcomp"; version="3.0"; sha256="1cs1idaylxdajb9vwpp6rkk56178i4c9nd0rxj8jbmdr56w4nrgq"; depends=[multcomp mvtnorm]; }; nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; npcopTest = derive2 { name="npcopTest"; version="1.03"; sha256="1kpa3avi95aa93y038f4zqhhdp8vdscdk0c6397qmqjg34hf1dnr"; depends=[]; }; - npcp = derive2 { name="npcp"; version="0.2-2"; sha256="187vz2nvv7352qv9nry96rcjf0w4zi19xhpbg0jljbqqjfn7abi5"; depends=[]; }; + npcp = derive2 { name="npcp"; version="0.2-4"; sha256="0w3zimljr2cz1bjhpgcv8qvkrhhh3jbd7bqi2yvrh05lpcxxagh0"; depends=[sandwich]; }; npcs = derive2 { name="npcs"; version="0.1.0"; sha256="00gxi2yalp7pcykxmm1kafv3fpyqwc7xvmv10z6x3yngk62rj0r6"; depends=[caret dfoptim e1071 foreach formatR magrittr MASS naivebayes nnet randomForest rpart smotefamily]; }; npcure = derive2 { name="npcure"; version="0.1-5"; sha256="0hf6w8w76qmjdsd6zgg85jj5ypmmg1a1ryzqwnxcypsdjxaq539z"; depends=[permute zoo]; }; - npde = derive2 { name="npde"; version="3.2"; sha256="17p24djwl9nxhvzb9hg2iqj2vak0h55zshwgnsk98gj4z4zaqwwr"; depends=[ggplot2 gridExtra mclust rlang scales testthat]; }; + npde = derive2 { name="npde"; version="3.3"; sha256="1my925wrl3izhidim49z787pc6fvh41kzgdqx24llgz8wsa9xb6q"; depends=[ggplot2 gridExtra mclust rlang scales]; }; nph = derive2 { name="nph"; version="2.1"; sha256="100x7ar498s18rs8m4bx0kf4h8vqk1clb4z4kdnlni16lrpc90hy"; depends=[ggplot2 muhaz multcomp mvtnorm survival]; }; nphPower = derive2 { name="nphPower"; version="1.0.0"; sha256="0jqrbjm56nmhrmhsidz0bzyifq6kpqch8r64j8vd98b7xgcb6w4h"; depends=[MASS mvtnorm survival zoo]; }; nphRCT = derive2 { name="nphRCT"; version="0.1.0"; sha256="0b29izx3rz17g0jx72s33jj8ps0z3kq8fj2v0035hcjacnswz9ya"; depends=[ggplot2 purrr survival]; }; + npi = derive2 { name="npi"; version="0.2.0"; sha256="0akf9m46iy18nqm678sga1dxq1135jj33yrxz30yhd75w6nicgri"; depends=[checkLuhn checkmate curl dplyr glue httr magrittr purrr rlang stringr tibble tidyr]; }; nplplot = derive2 { name="nplplot"; version="4.6"; sha256="1sxmz0cl15fdc0s987nwjnl6ywxg4fqs8qnm5nkcbyj6b9jzcbwy"; depends=[]; }; nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; nplyr = derive2 { name="nplyr"; version="0.1.0"; sha256="1cq4qq7d4xkvwdw1byxigxii2kmv899c4svjg0vg3sxxf8wvz6ix"; depends=[assertthat dplyr purrr rlang]; }; @@ -13253,7 +13335,6 @@ in with self; { npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.5.2"; sha256="1d585rz07ldmmfcsrb11nl2f7jry2p0cc5dm8vlwr1jv7ag0r9y5"; depends=[ks lubridate raster rgdal snow]; }; - nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; }; npreg = derive2 { name="npreg"; version="1.0-9"; sha256="10pgcjhiannvxkbsw3ywkjzmgsq2m7dqwqhxkfcdnbc052n7s6di"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.5.2"; sha256="1d2p23qqwa06rxfl5v9bcvq2j6pcsvjywq74qgrflkjk45g2kjb5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; @@ -13272,9 +13353,9 @@ in with self; { nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; }; nsarfima = derive2 { name="nsarfima"; version="0.2.0.0"; sha256="0sv63anrsh0ajfvvkb44zsvc7sxws3xpsgwxqa951gy98w8h58g5"; depends=[]; }; nscancor = derive2 { name="nscancor"; version="0.6.1-25"; sha256="183kvzlln5lhmi51dm0skq1165c3hhy1yz5h2g7nxwqk2b4p23xj"; depends=[]; }; - nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; }; - nse2r = derive2 { name="nse2r"; version="0.1.5"; sha256="1gwq8x3sn2f4p3yivmg2dljpdjcwsy2s6467pnwlcjdmr3sqgv2b"; depends=[httr jsonlite magrittr rvest xml2]; }; - nseval = derive2 { name="nseval"; version="0.4.2"; sha256="17zs7x86qv01c6s6mw49xdvslpxbz0cm3pfalli58qh83hh3rlks"; depends=[]; }; + nse = derive2 { name="nse"; version="1.21"; sha256="0mw2ijc6z0l8sa7z5fbcapp1rl87zhh5v32iw1mcjw4khwc93bk7"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; + nse2r = derive2 { name="nse2r"; version="0.1.6"; sha256="0b7ll490xf8r4787qkaz01z3djc7dzgzqg3w4nmmrnrfv36mkybf"; depends=[jsonlite magrittr yahoofinancer]; }; + nseval = derive2 { name="nseval"; version="0.4.3"; sha256="07pabn4msb6q50x67z84flb8fpzf43s1dy61cnqd7rn4l7zgc181"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.1"; sha256="1b3kkd1mi6g13bl2mkzqyvz0ki296fa9pv055r8mpkdm6gk12lb4"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; nsm3data = derive2 { name="nsm3data"; version="0.1"; sha256="15m3x7jmwmh3rs65v5j39672253crc379zq3k6xigi6p7qnba7sn"; depends=[]; }; @@ -13289,9 +13370,9 @@ in with self; { numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; numKM = derive2 { name="numKM"; version="0.2.0"; sha256="0g5jw12fmfc6nl6a3ghpslkjd2d7pbihl70sks35r7dalmr6ihzk"; depends=[survival]; }; numOSL = derive2 { name="numOSL"; version="2.6"; sha256="03h1p56650x4my5vq5jlmjsz5xj0w2j75qfr08rh7nr38dwgp1k8"; depends=[]; }; - numbat = derive2 { name="numbat"; version="1.0.2"; sha256="0qh37mw8kpajxxvnljla4bc590nd0br17zs9x3k8jhzsc25mffdc"; depends=[ape argparse caTools data_table dendextend dplyr GenomicRanges ggplot2 ggraph ggtree glue igraph IRanges logger magrittr Matrix parallelDist patchwork pryr purrr R_utils Rcpp RcppArmadillo RcppParallel reshape2 RhpcBLASctl roptim scales stringr tibble tidygraph tidyr tidyverse vcfR zoo]; }; + numbat = derive2 { name="numbat"; version="1.1.0"; sha256="0b7wdrkgswjp5pc9f3h86d0v0xmpifbv4q0zda46r7ijwxys1p9w"; depends=[ape caTools data_table dendextend dplyr GenomicRanges ggplot2 ggraph ggtree glue igraph IRanges logger magrittr Matrix optparse parallelDist patchwork pryr purrr R_utils Rcpp RcppArmadillo RhpcBLASctl roptim scales scistreer stringr tibble tidygraph tidyr tidyverse vcfR zoo]; }; numberofalleles = derive2 { name="numberofalleles"; version="1.0.1"; sha256="0rjl21844yqp2503gy71c6vg8xywc4lcx7qr9vwvkjw5wiwxls11"; depends=[partitions pedtools Rcpp ribd]; }; - numbers = derive2 { name="numbers"; version="0.8-2"; sha256="0gapcnk6zw9n77yddwsj0v6lzxm7ly2myjjj8kw5wjyng0l27b61"; depends=[]; }; + numbers = derive2 { name="numbers"; version="0.8-5"; sha256="02r2mlq3jygvwi7anbrrid6693qc7iklxhc9ksmqjdlmgzdxxmbp"; depends=[]; }; numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; numform = derive2 { name="numform"; version="0.7.0"; sha256="0n96jm141h4awazr8sads9d99faw8kdy3vbhmjr58d8iqf7793f8"; depends=[glue]; }; nutriNetwork = derive2 { name="nutriNetwork"; version="0.1.1"; sha256="0ya95h88jkiwc7cg7ic8bmyd7b0lgnhxrywwqvi2j6m6nbvvaxzy"; depends=[glasso huge igraph Matrix tmvtnorm]; }; @@ -13299,7 +13380,7 @@ in with self; { nvmix = derive2 { name="nvmix"; version="0.1-0"; sha256="12lhch9sib2nx8j7500dchfi27fvpabbcdkcw9qh194fx22ycknx"; depends=[ADGofTest copula Matrix mnormt pcaPP pracma qrng]; }; nycflights13 = derive2 { name="nycflights13"; version="1.0.2"; sha256="07aa76c77pm1wpzkwjmzv8n6ir5i6fxawx8wx586gwc5wajcb1qf"; depends=[tibble]; }; nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; }; - nzffdr = derive2 { name="nzffdr"; version="2.0.0"; sha256="1g32bra2z6a20jjqm6d7irccmr0x36h576bws6kh5x3h25i3plfv"; depends=[curl httr stringi xml2]; }; + nzffdr = derive2 { name="nzffdr"; version="2.1.0"; sha256="14s2dfrrknaswg4l69lncsdbd7algpd9pzgrhpip0vbmyq9pa2ni"; depends=[curl httr rlang stringi tidyr xml2]; }; nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.1-1"; sha256="1kzsmsliwv8776cyb3wmvzyrr6mqgrsxswxyj1fsxr4yxwlkyr98"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; o2geosocial = derive2 { name="o2geosocial"; version="1.1.0"; sha256="158nbc45h4k677lgx9n976d9kz7hy8fb7z5s2v6pmkmh521jdn2a"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; @@ -13307,7 +13388,7 @@ in with self; { oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; - oai = derive2 { name="oai"; version="0.3.2"; sha256="1zcbcxhw692s0y6izvwazyzhgx0iwsxsbcan2nk0mb7n11p7bypb"; depends=[httr plyr stringr tibble xml2]; }; + oai = derive2 { name="oai"; version="0.4.0"; sha256="0czf8f2qcjl9lh48svicpis09d3iwz9cndfm7hq8wlz5dl3dwh7m"; depends=[httr plyr stringr tibble xml2]; }; oaqc = derive2 { name="oaqc"; version="1.0"; sha256="1rc0l79xygmr2rp5sjadzigbj65a13z5xlvrxzy26cl0wsxwhmjf"; depends=[]; }; oaxaca = derive2 { name="oaxaca"; version="0.1.5"; sha256="1z3sbkgzaqq6n1bz0f17gqrbfjbm8bp20384ryx3jq2v50b6gbry"; depends=[Formula ggplot2 reshape2]; }; obAnalytics = derive2 { name="obAnalytics"; version="0.1.1"; sha256="1l4ld120qk0adycmvqrkzada10kb7z03lj2njzqagmacl1z8598f"; depends=[ggplot2 reshape2 zoo]; }; @@ -13321,7 +13402,7 @@ in with self; { observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; occCite = derive2 { name="occCite"; version="0.5.6"; sha256="08bc0pi2i2fmc9fcmir150b7g8jnd58q3qaakw2gk25yjy14rp7j"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; - occTest = derive2 { name="occTest"; version="0.1"; sha256="1ligcwdwjq7hix7xn6k0ykvlnnsh3v7cx33xz52zrpbz2ljy29jr"; depends=[alphahull biogeo CoordinateCleaner countrycode data_table dataPreparation dplyr DT ggplot2 Matrix outliers pingr plyr raster rgbif rgdal rgeos rnaturalearth rnaturalearthdata sf sp spocc stringr svMisc tictoc tidyverse]; }; + occTest = derive2 { name="occTest"; version="0.1.1"; sha256="11dqkah6z50zbxiyniv4f2f0n742gmgzqdaarvc17vn750b6b595"; depends=[alphahull biogeo CoordinateCleaner countrycode data_table dataPreparation dplyr DT ggplot2 Matrix outliers pingr plyr raster rgbif rgdal rgeos rnaturalearth rnaturalearthdata sf sp spocc stringr svMisc tictoc tidyverse]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; oce = derive2 { name="oce"; version="1.7-10"; sha256="1zv8jpnmfwq59plsqzjjj0hi0bbg5zfm5w7hcl7m5xkkmsvyx6dq"; depends=[gsw Rcpp]; }; @@ -13346,10 +13427,10 @@ in with self; { oddstream = derive2 { name="oddstream"; version="0.5.0"; sha256="1nwjw7fq6b4jdq4m2w0a7xgmzjg5a6pbma1d3r9msiz8rnhb0c54"; depends=[dplyr ggplot2 kernlab ks magrittr MASS mgcv moments mvtsplot pcaPP RColorBrewer RcppRoll reshape tibble tidyr]; }; odeGUTS = derive2 { name="odeGUTS"; version="1.0.1"; sha256="1c3w934dwh5jsh5z169isv9kqh8xbfgp4rk7k1sp8mj0kvy8nqc4"; depends=[deSolve dplyr magrittr tidyr zoo]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; - odetector = derive2 { name="odetector"; version="1.0.0"; sha256="041diyzap14gfj73pi4qrfnmikm8xchyii9vrz8y411dgi17aiqg"; depends=[ppclust]; }; + odetector = derive2 { name="odetector"; version="1.0.1"; sha256="094i6ykv3s0c5yhdnlgpkz1wb6pr9k6r3vsh7zgkxyy5iayi6dlv"; depends=[ppclust]; }; odin = derive2 { name="odin"; version="1.2.4"; sha256="0m8afhbpjdcdscgw7ngsdr7n8qpxicn3pqjrsjbwi4hrk5aii7ry"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odns = derive2 { name="odns"; version="1.0.1"; sha256="00ihccylkn7q70f5c4qw19i82a80c5akwr7wh6whmqcmgj6bdq4i"; depends=[data_table glue httr jsonlite]; }; + odns = derive2 { name="odns"; version="1.0.2"; sha256="0a2ifmyrsfih5a7jwc0b6l9wl7c1s5x08fq5bfm27xm9jnb8fwsn"; depends=[data_table glue httr jsonlite]; }; odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="1.3.1"; sha256="185i81ixrm1mby5ryaymi4ixwxnx84g8f1zv6qbb1aj0wf1rxsng"; depends=[]; }; oem = derive2 { name="oem"; version="2.0.11"; sha256="0p9s68zgma9mcjnz0xg6h07yp38rqj209asg18hji8528iazbv8g"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; @@ -13385,14 +13466,16 @@ in with self; { onc_api = derive2 { name="onc.api"; version="2.0.1.0"; sha256="10scbhg6aniqzrbkblhfhz9ni710xzppbzfrr4wrhsy1z5y2nfwc"; depends=[anytime crayon httr humanize lubridate stringi testthat tictoc]; }; once = derive2 { name="once"; version="0.4.1"; sha256="0yshpww3rq68m0qx7kid3zlcxi1nf81vmziclyvpg61aikj8fhx5"; depends=[magrittr]; }; oncoPredict = derive2 { name="oncoPredict"; version="0.2"; sha256="1slq5vp78n5hcq24vlg35r6xansdgriyjw8y9iyb0lj3cdaq38c3"; depends=[BiocGenerics car gdata genefilter GenomicFeatures GenomicRanges glmnet IRanges maftools org_Hs_eg_db pls preprocessCore readxl ridge S4Vectors sva tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + oncomsm = derive2 { name="oncomsm"; version="0.1.2"; sha256="13h5ydw11kdjcdr48hqa4dv81qixj4l5qxrzwv4x3lqdnsvvnll1"; depends=[BH checkmate dplyr furrr ggplot2 magrittr purrr Rcpp RcppEigen RcppNumerical rlang rstan StanHeaders stringr tibble tidyr]; }; oncrawlR = derive2 { name="oncrawlR"; version="0.2.0"; sha256="0cm26diaf3jlzfrpgh13q0hakakmj6vy41wk9z0w81az4jcg9sn9"; depends=[caret DALEX dplyr e1071 formattable fs ggplot2 htmltools jsonlite pdp pROC RCurl readr rjson rlang rlist scales sparkline tidyr webshot xgboost]; }; ondisc = derive2 { name="ondisc"; version="1.0.0"; sha256="071jrldclkaz5lfp3k5fh1ilpgvvcnakh2vvnr69n3pri9dl3fls"; depends=[crayon data_table dplyr magrittr Matrix Rcpp readr rhdf5 Rhdf5lib]; }; oneclust = derive2 { name="oneclust"; version="0.2.2"; sha256="0qbwnfv5lk93nfwwzfjwla6lv6imfcvcvmlb9h7ij32zpqg1fzwk"; depends=[magrittr Rcpp]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onelogin = derive2 { name="onelogin"; version="0.2.0"; sha256="06p3a8kaxmvsj8nn7dy8w6wv1jjw67is991hqg9q0fa20ifym3dl"; depends=[glue jsonlite magrittr R6 safer tibble]; }; - onemap = derive2 { name="onemap"; version="2.8.2"; sha256="14p3p3bvcgl63fk8sivwgqdcm7cydyh106rz26zk30gcjgvn91rm"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof stringi tidyr vcfR]; }; - onemapsgapi = derive2 { name="onemapsgapi"; version="1.0.0"; sha256="11w3xkjxhjf0b78hfjxjk650giswaf1js471backz4pcb97gaigl"; depends=[dplyr furrr future httr purrr rlang stringr tidyr]; }; + onemap = derive2 { name="onemap"; version="3.0.0"; sha256="0h5bi4zyiglic60msrkfny28k1rb7avqbs87ipzwwayb452b970c"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof tidyr vcfR]; }; + onemapsgapi = derive2 { name="onemapsgapi"; version="1.1.0"; sha256="0q1i17dkgcxqswa9wckxzsf1wr118zsw7yhbrbkbikvm27hqrrva"; depends=[dplyr furrr future httr purrr rlang stringr tidyr]; }; onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; + onetime = derive2 { name="onetime"; version="0.1.0"; sha256="17snjkldm11ry5f1mp18jkmlw7hk0zw5yl1qrmakh1lx7fq1326v"; depends=[filelock rappdirs]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; onlineBcp = derive2 { name="onlineBcp"; version="0.1.8"; sha256="1pwpnmpgh3hl8mv1pbn577dn832nxbsfaxn3hqghvs4dn06lwngf"; depends=[VIM]; }; @@ -13400,9 +13483,10 @@ in with self; { onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineforecast = derive2 { name="onlineforecast"; version="1.0.1"; sha256="0cpwb6bx1qcf05rbi5ycdpgmfb0c5lvhki1c77kzhds5bn3gw5k4"; depends=[digest pbs R6 Rcpp RcppArmadillo]; }; onlineretail = derive2 { name="onlineretail"; version="0.1.2"; sha256="0lid3g4v51c664304cxgjm209qxv88hqglv89frmj4afc0y6k7sc"; depends=[]; }; + onls = derive2 { name="onls"; version="0.1-2"; sha256="19pgrhr7xzas4s592l4sgv1dfynf3s3d227zwcdv6z6wrxh40hyj"; depends=[minpack_lm]; }; onmaRg = derive2 { name="onmaRg"; version="0.1.2"; sha256="1gvxnw53r5yan5dsp379psz3mnxpnc0wqmwmb2s5qf8ldq688zi1"; depends=[dplyr httr readxl sf stringr]; }; onnx = derive2 { name="onnx"; version="0.0.3"; sha256="1s0swrcff9v9ffbjkraahmb398gh2jrca2wf5k6gs8037frnl8wd"; depends=[reticulate]; }; - onpoint = derive2 { name="onpoint"; version="1.0.2"; sha256="0l1dblj6cr2qagxmgx5ma455qazg1br5y0zpl2dv7jcdb24f7pnq"; depends=[ggplot2 spatstat_core spatstat_geom spatstat_random]; }; + onpoint = derive2 { name="onpoint"; version="1.0.3"; sha256="0g0i88s4hwgjnwqljjgbibc6bks0hy0f27v94w0br45yklrdh73f"; depends=[ggplot2 spatstat_explore spatstat_geom spatstat_random]; }; onsr = derive2 { name="onsr"; version="1.0.1"; sha256="0qazwqdbbinsrimn7rf7xcjz5l5zp372i5j54rp87xy098q7c0l3"; depends=[httr jsonlite readr tibble]; }; ontoFAST = derive2 { name="ontoFAST"; version="1.0.0"; sha256="0l3d8bp86849rp0qrs1dfv7bjmrfdqvahb1x656vk69fi20722ma"; depends=[dplyr ontologyIndex pbapply plyr shiny shinydashboard stringr sunburstR usethis visNetwork]; }; ontologics = derive2 { name="ontologics"; version="0.5.2"; sha256="074pqjfm24gd332xja6mgdy8grbbwa6r3yhclcpm1d7hx8dhy2g9"; depends=[checkmate dplyr httr magrittr purrr rdflib readr rlang stringr tibble tidyr tidyselect]; }; @@ -13411,11 +13495,11 @@ in with self; { ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; oolong = derive2 { name="oolong"; version="0.4.1"; sha256="16f5r2z9p87k3pi643s63nxxnh7gn4x70m5jpk48hwb2s1rdar9h"; depends=[cli cowplot digest ggplot2 irr keyATM purrr quanteda R6 shiny tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; - oompaData = derive2 { name="oompaData"; version="3.1.2"; sha256="11c5h55xjvbavyqy9z2ch03ngy739zs61r8r4lc2gijscc7wn1s4"; depends=[]; }; + oompaData = derive2 { name="oompaData"; version="3.1.3"; sha256="0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; }; oottest = derive2 { name="oottest"; version="0.9.1"; sha256="1y0k0jcncjkcgfxybs2yyfcc7ywa49jnalrw8mn7m04h58gqg77x"; depends=[]; }; - opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.2"; sha256="0b57hkd7h0l5xdcg196dc2la67aslrrg30qzhaj33nirgy8cig81"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.3"; sha256="1d9ll5shhbk93hjvxc3nhaffjg31l14w9nqcbwqjv43gjaz0yq3a"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opa = derive2 { name="opa"; version="0.5.3"; sha256="14y3q7mblxc65lpsndsij1wgwd29wfzfc58g666dgs5fz7vdqf72"; depends=[cpp11 Rcpp]; }; opalr = derive2 { name="opalr"; version="3.2.0"; sha256="1k4qm25gs4gkk9ixxz89dqnz6wkidly13iv9r437fdwsm6m9bzyr"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.2"; sha256="0laf24x2h6xwhd5wwcwi1iqg5gni29bmlfr86yrvpdrdgr7f4cha"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; @@ -13428,9 +13512,9 @@ in with self; { openSkies = derive2 { name="openSkies"; version="1.1.6"; sha256="03nlbmxp36z82myrbamwl1zngsnfxfw80niisapv53n605p4lrg1"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; openVA = derive2 { name="openVA"; version="1.1.0"; sha256="0j4lz66wcx20n0sdjrp06a6zwcz8jvcihmdaj1jr1rnrb5sags0z"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openai = derive2 { name="openai"; version="0.1.0"; sha256="19h6sbsgqa81dq23whxxymp97f83x2bfyl2a5brim6l809xv5w1v"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; - openair = derive2 { name="openair"; version="2.11"; sha256="0yak0n9ay7ikbmm8fchb2zpzk1sq9hnrrhjhcd5ak839k91lhj7c"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr tidyr]; }; - openairmaps = derive2 { name="openairmaps"; version="0.5.1"; sha256="0b6ibb4846wnmv6pwl83j7544iyma2b0mxjkx6jic0g82m9r7f7a"; depends=[cli dplyr forcats leaflet lubridate magrittr openair purrr rlang stringr tibble tidyr]; }; + openai = derive2 { name="openai"; version="0.3.0"; sha256="18kr3g6896phmyjywx70nj8yy391w6bl83in9wz4fjrnn7b8j88l"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; + openair = derive2 { name="openair"; version="2.12"; sha256="1mgawgf6y8bfb606y8ka7g920sqn3c322l1xkis25zgq2r1gk6js"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openairmaps = derive2 { name="openairmaps"; version="0.6.0"; sha256="15w5pwgdkmnyasrv3dwanaf9jz6iplq18zx53iz60nnn9bndy29n"; depends=[cli dplyr forcats leaflet lubridate magrittr openair purrr rlang stringr tibble tidyr tidyselect]; }; openalexR = derive2 { name="openalexR"; version="1.0.0"; sha256="0xyzlg3cyhbndnhc864g8447nffc2gg5si7s4h5l1jygyz3c8bki"; depends=[curl httr jsonlite progress tibble]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; @@ -13439,14 +13523,14 @@ in with self; { opencv = derive2 { name="opencv"; version="0.2.3"; sha256="1kpkw3wkvfs2g9pdkk0s9q7a3pq3vq7n9hw55bz0v9c2mmdcz92b"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.5"; sha256="1fiviazs0ydxvmsqaayhwnxf4wl4sx1psn8i5mpis7218d9ihagy"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; - openeo = derive2 { name="openeo"; version="1.2.2"; sha256="10lmkga3pm6h0sv0jccazi3xkda3fzqfk5nv5xf8hkm3g3kccs40"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; + openeo = derive2 { name="openeo"; version="1.3.0"; sha256="002zrvrm417ix80vrqnl2wygqh0vjymfi5hl88v6ajfspp9r73qn"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; openintro = derive2 { name="openintro"; version="2.4.0"; sha256="1svvlhdnv8dvqwphsn83asfd5xzvvar2bz334aqndqx76dv9j88j"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; - openssl = derive2 { name="openssl"; version="2.0.4"; sha256="1v2w19sffwqkgi9nj593ga46l9qp716lyb3gnjihq3624x8wd9d1"; depends=[askpass]; }; + openssl = derive2 { name="openssl"; version="2.0.5"; sha256="1lw60yq20r42l7y1wbp79s3mk3dwg62v0dh7jx1cdd7rb46i9hla"; depends=[askpass]; }; opentimsr = derive2 { name="opentimsr"; version="1.0.13"; sha256="0m4xp70cq4h76r4qk7krn5p9w3xv44z5lrkpys7kbvxr38g5y0il"; depends=[DBI Rcpp RSQLite]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.4.0"; sha256="1q0szrbgcjzc7ny08gilv2q0v1x81i626mzsahkii79qqb7capr1"; depends=[checkmate curl data_table geodist googlePolylines lubridate pbapply rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5.1"; sha256="1j2516plvlrp7l0mw7xqjhjjcidfdnfsybdhi2bx3n0910w29lk4"; depends=[Rcpp stringi zip]; }; - openxlsx2 = derive2 { name="openxlsx2"; version="0.3"; sha256="1hxz98nn09y86whx2z0dr0hxgg7cz8h10jz75ri4xpgcmlfxhhw6"; depends=[magrittr R6 Rcpp stringi zip]; }; + openxlsx2 = derive2 { name="openxlsx2"; version="0.4"; sha256="0rfp82abrhfc094xxa634r850gw8nx79ariw6kib6z1dh9bli17p"; depends=[magrittr R6 Rcpp stringi zip]; }; opera = derive2 { name="opera"; version="1.2.0"; sha256="09gh0c74y3n25f9p1rya8ybql5mfaqkcnr8i8wwwzfm67vqdfrnh"; depends=[alabama htmltools htmlwidgets pipeR rAmCharts Rcpp RcppEigen Rdpack]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; @@ -13456,7 +13540,7 @@ in with self; { optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optbin = derive2 { name="optbin"; version="1.2"; sha256="08v8dn3jn75p1f04lc963gasyszjf57j7kajwpqv4w20lwjsw17w"; depends=[]; }; - optedr = derive2 { name="optedr"; version="1.0.1"; sha256="0ywq5s3y30r0il2vsd99qgd8m7c1xsk59fgzz8zs5ips3xsjmnwg"; depends=[cli crayon dplyr DT ggplot2 hrbrthemes magrittr nleqslv orthopolynom plotly purrr rlang shiny shinyalert shinydashboard shinyjs]; }; + optedr = derive2 { name="optedr"; version="2.0.0"; sha256="17r0axfh7yjv5xj9060vi5vysnmi38pz5dsvm0fazfcpzzlxnld7"; depends=[cli crayon dplyr ggplot2 nleqslv purrr rlang shiny]; }; optextras = derive2 { name="optextras"; version="2019-12.4"; sha256="1sqkid6h13h8i8wzri26s828ycwlxlwpwxd85r8bw9h8hs1n602r"; depends=[numDeriv]; }; optiSel = derive2 { name="optiSel"; version="2.0.5"; sha256="13rxv6wqz5gpmsfb96173p1y8140zqj4llihxsvjczcqwhrayjha"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="1.0"; sha256="0mhl5gdz3y3cs3p6v7z4n50na3sqj0w739gixcf4qgb1ppx0h1xa"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp shapes stringr]; }; @@ -13466,15 +13550,15 @@ in with self; { optigrab = derive2 { name="optigrab"; version="0.9.2.1"; sha256="1c3q4kx8rkgpjsy0hy2w2dd9kv51avnw1ab82hzmjgngfnvaig0n"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; optimCheck = derive2 { name="optimCheck"; version="1.0"; sha256="1qjkv1mfyn7sw0dkxxcdaqj85vl71cgffpf3k3mvzy0s8yhxjb4n"; depends=[]; }; - optimLanduse = derive2 { name="optimLanduse"; version="1.1.0"; sha256="0n30si6znvcyncvzbcm2149dvpqdmawamb5raz2fg19jjkj5qpfl"; depends=[dplyr lpSolveAPI tidyr]; }; + optimLanduse = derive2 { name="optimLanduse"; version="1.1.2"; sha256="0vrn794y6fp02ara6xa1vlfx7vim0gbx5bc1pkns2fh76gqpsa4n"; depends=[dplyr lpSolveAPI tidyr]; }; optimParallel = derive2 { name="optimParallel"; version="1.0-2"; sha256="178ayfaivkbxkghxbg97lx4gl27kxkmgaaw9y8q5206r4cncd6qg"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="2.3"; sha256="1jkwhgpw7nknd7h8c01z25x566bw2qb388i6g5nwcygxsshdgpri"; depends=[cubature mvtnorm shiny]; }; optimalThreshold = derive2 { name="optimalThreshold"; version="1.0"; sha256="1m39q36p7i7z31b90awriq5jf9rfybyw5lj3m1w33v2ssipkzp1n"; depends=[ars coda HDInterval mgcv rjags]; }; - optimall = derive2 { name="optimall"; version="0.1.1"; sha256="15cq4b50j39ahpx84g0wrg7gs9n36rx4ij2srm14zcjsmvnxbv9p"; depends=[dplyr glue magrittr rlang tibble]; }; + optimall = derive2 { name="optimall"; version="0.1.2"; sha256="1lq1pd8ns6ivffp5kh3w1vczdwp41mgsywlaykyc7vb6j55qycy4"; depends=[dplyr glue magrittr rlang tibble]; }; optimbase = derive2 { name="optimbase"; version="1.0-10"; sha256="0hdzbqr03jwy1vz3q9iw0kvii5p9g1vm4c3hs3jxszcj1rgrfm12"; depends=[Matrix]; }; optimg = derive2 { name="optimg"; version="0.1.2"; sha256="0fc7d3g5nxjjcbwh6v5m0ryhanw80v250j8m7j2gv4c9ql4g650d"; depends=[ucminf]; }; optimization = derive2 { name="optimization"; version="1.0-9"; sha256="1pg9a78hhm0h4pfagj13r1dmynv714knhw2dxhzhcvlgk9inpam8"; depends=[colorspace Rcpp]; }; - optimizeR = derive2 { name="optimizeR"; version="0.1.1"; sha256="1laxj4x77ws3q1bvdb5vqx2i3fspqws65x5jfsfj73j4qlc04z56"; depends=[lifecycle]; }; + optimizeR = derive2 { name="optimizeR"; version="0.2.0"; sha256="10pnf20p544ppa6q5arzay73pakin8yc04ywh5k49v5px2j0l8zc"; depends=[]; }; optimos_prime = derive2 { name="optimos.prime"; version="0.1.2"; sha256="1a76gfzpd2s4gq15cd3frndak7wc6q3xqh9sllkk665031fx6z1h"; depends=[ggplot2 plotly tidyverse]; }; optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-8"; sha256="1q5hfbiq265q5im6wg78spaqsfj421hpzh8bz51zmi188h6xwnwr"; depends=[optimbase]; }; @@ -13489,6 +13573,7 @@ in with self; { optparse = derive2 { name="optparse"; version="1.7.3"; sha256="1v87db7fm494dwxvdsnl1m2kj84nplq7pkh0g41najhx0npy31v2"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; + optrefine = derive2 { name="optrefine"; version="1.0.0"; sha256="0s5gwshphjwl02vw22h9dckqix7yw0zzyvasfy594c7d1qw46y4p"; depends=[ggplot2 MASS Rglpk sampling]; }; optweight = derive2 { name="optweight"; version="0.2.5"; sha256="1mfk9sp47flqq7i762wip5191j8m0q9kbyxs4a7f0pd76qwf67q2"; depends=[ggplot2 Matrix osqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-1"; sha256="1vw6pbk1iiaxmfws95wmwf56p3afk10s5c3x9f0lliamckpyzkck"; depends=[arules Matrix Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; @@ -13504,10 +13589,10 @@ in with self; { orders = derive2 { name="orders"; version="0.1.6"; sha256="0b1ysq22qhdzs5fb63m786iil0rkb9qsj9p730izn7dg3zx36gl1"; depends=[actuar gamlss_dist Newdistns]; }; orderstats = derive2 { name="orderstats"; version="0.1.0"; sha256="0a3ga0cjryvbininspsx5wzc96s3fza06s3d5fhbllbixz0rap4a"; depends=[]; }; ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; - ordinal = derive2 { name="ordinal"; version="2019.12-10"; sha256="09bpmjmbf4x82kgf6bm4bkncq2apdv9mk20zj4zgma2jx2vyfhbs"; depends=[MASS Matrix numDeriv ucminf]; }; + ordinal = derive2 { name="ordinal"; version="2022.11-16"; sha256="14yld28vjmvxbwz6mapfri4vrj3nsf9p73fn2z80j6jkz8fsv22l"; depends=[MASS Matrix nlme numDeriv ucminf]; }; ordinalClust = derive2 { name="ordinalClust"; version="1.3.5"; sha256="0hmqvhrmijgzanh08z5v82a07zl7xm69wl8zzj99fksahyrgxjdc"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; ordinalCont = derive2 { name="ordinalCont"; version="2.0.2"; sha256="1azwcr1si3b8dxf2y59d3rxw4msfq79khzg7zgqd0kbzyka4ygl8"; depends=[boot Deriv]; }; - ordinalForest = derive2 { name="ordinalForest"; version="2.4-2"; sha256="0s5isf8z6rrksl4jv1aizffxy3bcl726qjpj5j6z7642wkdkpygi"; depends=[combinat nnet Rcpp verification]; }; + ordinalForest = derive2 { name="ordinalForest"; version="2.4-3"; sha256="06blmwmn42dv6sri3j3473arrql5rihdlp7kgh56b2w1j2wdqq7s"; depends=[combinat nnet Rcpp verification]; }; ordinalLBM = derive2 { name="ordinalLBM"; version="1.0"; sha256="1sfzkm3f9s5nbalakgk5v919wr7hdlr5p280rw2p8dy4wxr3xk3s"; depends=[RColorBrewer reshape2]; }; ordinalNet = derive2 { name="ordinalNet"; version="2.12"; sha256="0ijgxp1lh4hbgks0p5041f5s6kpfrlm6f7hdz2nm3dn1rhq6bwvi"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; @@ -13515,17 +13600,17 @@ in with self; { ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.7"; sha256="0c1a4ziyh6jcqnblvc97gpv7bqyhd56gmxxyn1jascpvs2xxq2qy"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.1"; sha256="1hlzi8rd24d9ab28dn70hf96d82r275l784ryk0c3hx574a1brlq"; depends=[gtools mvtnorm]; }; ordr = derive2 { name="ordr"; version="0.1.1"; sha256="07nsl6mdm4dmyl8vsqzcpd2mihcxsm68gjx3v1dfqgjqmz477nvf"; depends=[dplyr generics ggplot2 ggrepel labeling magrittr purrr rlang scales stringr tibble tidyr tidyselect]; }; - ore = derive2 { name="ore"; version="1.7.1.1"; sha256="0rs5r5h11x4l4nsbl4xqzbl4ahajd5374fq05abcmfjnjr9j64w5"; depends=[]; }; + ore = derive2 { name="ore"; version="1.7.2.1"; sha256="104506x9x14bs8lfhydwpgdh4qws2vqkvyy6xrlrviqlll6qbjgg"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; ores = derive2 { name="ores"; version="0.3.2"; sha256="0xzc0d38z7h5ghab3kqsv0r2cl3888j7vn94p51xlwcbhnq10kip"; depends=[httr]; }; orf = derive2 { name="orf"; version="0.1.4"; sha256="1njcnya5f2wx50l7gyf53js16xj1y6pwgbghxq4nm4grf2ck3mz1"; depends=[ggplot2 ranger Rcpp xtable]; }; - org = derive2 { name="org"; version="2022.7.21"; sha256="0gc01im9mpb7kj0dc4blgry868jrr1wy4v5wbfdsnbf5zy4xxivl"; depends=[]; }; + org = derive2 { name="org"; version="2022.11.23"; sha256="0ppiwdzy7x0fnqq5j23dim4g64cn3bq72v2vd91c2i3sg4n5ahlk"; depends=[]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; organizr = derive2 { name="organizr"; version="0.1.0"; sha256="1i6j7c7d588gnjmh3ddknrs95mhw6ikq53c6wd3zy82lmjvh96bv"; depends=[fs here readr rlang rstudioapi stringr]; }; orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.4"; sha256="0lds3y05byag466asi8hmv1yfllsdx7z5i8hq21r6dx3w4n4f46x"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.7"; sha256="0b66alm1mr6vsgj5cgliqxw8vpm1x504qs42crlf0n6339a38h5l"; depends=[abind assertthat data_table future future_apply listenv]; }; - origin = derive2 { name="origin"; version="1.0.0"; sha256="0byzia26snxgwqzabbg634y1s2w7gbk065cbv6v9fxxkrjb5ifk3"; depends=[rstudioapi]; }; + origin = derive2 { name="origin"; version="1.1.0"; sha256="132ccdh40rz2rxabqjfjrmhpjrm5b5hm9zfqm3qwssgligf30vg3"; depends=[cli rstudioapi]; }; orloca = derive2 { name="orloca"; version="4.10"; sha256="113y76gyhslpfyq7n1nnbgnxhxgr213f28vnc3n3b9pghkkr0p4z"; depends=[knitr png rmarkdown ucminf]; }; orloca_es = derive2 { name="orloca.es"; version="4.9"; sha256="00zb08dqcsh1ljl4f2djm1pwbrfbaddgapn3v8nascmwxlhb2hkw"; depends=[orloca]; }; ormBigData = derive2 { name="ormBigData"; version="0.0.1"; sha256="1rq202k4assmij21bjjk1ba7121p5p3rp21k548cc6lk81xj1rcc"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; @@ -13547,8 +13632,7 @@ in with self; { oskeyring = derive2 { name="oskeyring"; version="0.1.5"; sha256="10ajmkw8sfcafs77flg0050s8vf88lq56rv2dxk9gv4pkvg8z498"; depends=[]; }; osmdata = derive2 { name="osmdata"; version="0.1.10"; sha256="0ysmjmab6yfqcwzbjjqlk0hbna0x8fg27p3svjs5y3qasyyx7wwq"; depends=[curl httr2 lubridate magrittr Rcpp reproj rvest sp tibble xml2]; }; osmextract = derive2 { name="osmextract"; version="0.4.1"; sha256="03bxdkykp081q3d9n14y0qp31vnllc4rzp2ldzs4s572xfcjd1hb"; depends=[httr jsonlite sf]; }; - osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; }; - osqp = derive2 { name="osqp"; version="0.6.0.6"; sha256="1q669vscwypz0vf6s38b5yzn178miql4xf5dg7b7y2fnjqdl6gw5"; depends=[Matrix R6 Rcpp]; }; + osqp = derive2 { name="osqp"; version="0.6.0.7"; sha256="00w2hr0pagnvpsk84z99c7alhv7xvs9wpcmkzbcg3qs14g888rgf"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="4.0.0"; sha256="0lp5idik0lp2jn7mkgz512kpgp1zxxn4c7b1xb7aaia112p9fapp"; depends=[curl googlePolylines mapiso RcppSimdJson sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; ot = derive2 { name="ot"; version="0.2.0"; sha256="0lym92hsxhfjdkh738rxlpkq084454055vgxm2b4wdhqw00jwf5y"; depends=[]; }; @@ -13580,7 +13664,7 @@ in with self; { owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; owidR = derive2 { name="owidR"; version="1.4.0"; sha256="1rp8rvqg292b88dxmm21cxnni4n7ciqckxxjan3h3skyss7mc95d"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet lifecycle magrittr purrr readr rlang rvest scales sf stringr xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; - ows4R = derive2 { name="ows4R"; version="0.3-1"; sha256="0xi2xxyc6lxkwgaans0v2xj9jd0pvgxlyc5rmjilnc0afzwdv3x9"; depends=[geometa httr jsonlite keyring openssl R6 sf terra XML]; }; + ows4R = derive2 { name="ows4R"; version="0.3-2"; sha256="0p2yyzjxfkj3pr490ddcqxniyb3635rg26jmnc1hs29bv7aq014s"; depends=[geometa httr keyring openssl R6 sf terra XML]; }; ox = derive2 { name="ox"; version="0.1.0"; sha256="0j0va301bmppvmk6paqaqqaw85h8yf92i3pz7i59f2j8q9im82rx"; depends=[]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.1.1"; sha256="1szifw978qr7v8n178jhg4ap2jwvfnwjl2izbbiydwx8q1fyj2q4"; depends=[jsonlite stringi stringr]; }; oysteR = derive2 { name="oysteR"; version="0.1.1"; sha256="11zg959h9104hh8wid4003s8c4z9xhmicj39cc5vq1j8g1g7ilr7"; depends=[cli dplyr glue httr jsonlite purrr rjson rlang stringr tibble tidyr yaml]; }; @@ -13597,7 +13681,7 @@ in with self; { pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; - pRecipe = derive2 { name="pRecipe"; version="0.4.0"; sha256="0k8800043dq9ddx0xwvpqvzkfdklbmsb1svn9kvls20c93rxwvf0"; depends=[data_table ggplot2 ggpubr ncdf4 R_utils raster sf]; }; + pRecipe = derive2 { name="pRecipe"; version="0.4.2"; sha256="0z1jsnc5f2j2gq55sgqxys94l9cpqynlrhn8nqqxg4a2vc2b59yp"; depends=[data_table ggplot2 ggpubr ncdf4 R_utils raster sf]; }; pRepDesigns = derive2 { name="pRepDesigns"; version="1.0.0"; sha256="189jmh78vcr174lf0s283pbhknr87h3bq02gvvpg5r2hv31gdgjl"; depends=[]; }; pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-2"; sha256="0w76m169qghm8r3z319jv901ri136c9maa5j0r9kbgpdnq25v53w"; depends=[ggplot2]; }; @@ -13608,15 +13692,15 @@ in with self; { packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; packageRank = derive2 { name="packageRank"; version="0.7.2"; sha256="0z1ssfjkd831l6mf08qvch73h6sa3kpag46ybwyzbcx0hq6s0dqq"; depends=[cranlogs data_table ggplot2 ISOcodes memoise pkgsearch R_utils RCurl rversions sugrrants]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; - packcircles = derive2 { name="packcircles"; version="0.3.4"; sha256="05pv5c4k4njkr0xw6i6ksiy34hcyx2lbiqpv5gxw81yrkm0rxfyk"; depends=[Rcpp]; }; + packcircles = derive2 { name="packcircles"; version="0.3.5"; sha256="0m8ivgc5y1f9ramqw6sxb02ri6aqxz3av0l5csl32mdldrb126nc"; depends=[Rcpp]; }; packer = derive2 { name="packer"; version="0.1.3"; sha256="0b51nag4dmjxb8fb6z79j92dx1s6427rhmr2piaqdzrfbk9kd7dh"; depends=[assertthat cli fs htmlwidgets jsonlite roxygen2 rprojroot rstudioapi usethis]; }; packrat = derive2 { name="packrat"; version="0.8.1"; sha256="1ni3xn51xifdb2bya5z54jn4nxgss6f23b3hn126j2kaz80h7ns5"; depends=[]; }; pacman = derive2 { name="pacman"; version="0.5.1"; sha256="0z7gngd6h83cpjhq1vg75wvzhdjbgjh7gj5d4zvvi9gd2lmagjcy"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.4.2"; sha256="0p02fdc5f7d7sbdvxill8jln76p1ndiw95k6s9j41slfriq647vd"; depends=[ape plyr vegan]; }; - pacotest = derive2 { name="pacotest"; version="0.4.1"; sha256="1ry0lwzphgivmlc8swhk6l26q4ca6x36rm8r7vvjb64y0fvayqk5"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; + pacotest = derive2 { name="pacotest"; version="0.4.2"; sha256="0zdrvcrf6ynid2wpngdslxzkpc4grcvrf6bzbrni9rvp94sfzjlf"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pacs = derive2 { name="pacs"; version="0.4.8"; sha256="0p27bhpq4dvgzqay33vaj3h77hcxr7d7r3f6hpb424c0sqil65v2"; depends=[curl jsonlite memoise stringi xml2]; }; pacviz = derive2 { name="pacviz"; version="1.0.2"; sha256="0br6gbxh010hybqlhsh90wgqj98wwach5a3hfb39kkj4xkk9il7q"; depends=[circlize e1071 plotrix]; }; - padr = derive2 { name="padr"; version="0.6.1"; sha256="0xgzkvygg4ss3c4q1fspmarbagr14i1z1ka6lnfcxmh4m5zcir17"; depends=[dplyr lubridate Rcpp rlang]; }; + padr = derive2 { name="padr"; version="0.6.2"; sha256="0mgjdva2yj9m0mps69gafy3w1c4zhik002b5b2j2zvbv3m34mw97"; depends=[dplyr lubridate Rcpp rlang]; }; pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; pafr = derive2 { name="pafr"; version="0.0.2"; sha256="0ali4m1pv73y88x1dk5rvmg1ysy48janjnc1hnqfcndszfz2b0wm"; depends=[dplyr ggplot2 rlang stringr tibble]; }; pagedown = derive2 { name="pagedown"; version="0.19"; sha256="1x26na8mqfrnlj5h3v1wxw1dhdxm891ckh0d23854fmss0yf6qrx"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; @@ -13624,7 +13708,7 @@ in with self; { pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; pagoda2 = derive2 { name="pagoda2"; version="1.0.10"; sha256="18ip8j5l5c3hqw1xsf5wnyas55i2mhk09phy68kjkjdgcymmpg7c"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; - pagoo = derive2 { name="pagoo"; version="0.3.13"; sha256="0y28y62sg3l5k840xm6pajc0rygqm822ypbzcwx1ks5iw288dgbp"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; + pagoo = derive2 { name="pagoo"; version="0.3.17"; sha256="0scf40vyw7lh5jh4p28894fa05nfl8n71g55w9bs9gbkszmn792k"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintingr = derive2 { name="paintingr"; version="0.1.0"; sha256="0km21rv6f137nngx4nzamplzgzhfgijlh1skfvvkp0cbjxv17cpi"; depends=[]; }; @@ -13633,7 +13717,7 @@ in with self; { pairwise = derive2 { name="pairwise"; version="0.6.0-0"; sha256="0mcd5lm6yk1hd1r1ffs0l3gj85bamnjw77i6lh4973lggs0zxzdc"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; pak = derive2 { name="pak"; version="0.3.1"; sha256="11vs377jfwxf8qpzf0pv5pkkdjzb6l3l5a35f2w1y1s88xz5rl1d"; depends=[]; }; - palaeoSig = derive2 { name="palaeoSig"; version="2.0-3"; sha256="1sn2nbiq037l81qvrqbg7gf1312g8vy574hsfng07qk1jpx7vwkk"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; + palaeoverse = derive2 { name="palaeoverse"; version="1.0.0"; sha256="0p70y0vp3afmfk73p7dnykcn7adssrckq8di0y0znfmya6mqk8gr"; depends=[ape deeptime geosphere h3jsr httr pbapply sf stringdist]; }; palasso = derive2 { name="palasso"; version="0.0.8"; sha256="0cgxfzhp394c8xprc2k0qx9c274bbp0cpazk7xilfrgcgk08156i"; depends=[glmnet Matrix survival]; }; pald = derive2 { name="pald"; version="0.0.2"; sha256="0xix3sf6zqpl10asad7lhqp6yk9v8kz81pqmxbwb85in5lngz5nr"; depends=[glue igraph]; }; paleoTS = derive2 { name="paleoTS"; version="0.5.3"; sha256="1hpgyjnviw9gzy21rsa4vqkiyfpim5y70yrbjyq5z3ifanszggi5"; depends=[doParallel foreach mnormt]; }; @@ -13676,15 +13760,15 @@ in with self; { paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parSim = derive2 { name="parSim"; version="0.1.4"; sha256="0iswcw52skx1hxb9bv9ihhwwyybprsk2615pmijsxp0bkzgsjc88"; depends=[dplyr pbapply snow]; }; parade = derive2 { name="parade"; version="0.1"; sha256="07x02j9jlldz4p0cyhw292041l3pziv56bhbzp4f0qpxhcbn5zn4"; depends=[]; }; - paradox = derive2 { name="paradox"; version="0.10.0"; sha256="08h92wk8splf0w3rach9zbk3xz13phgcd1yybmgbs0sj4vx93whd"; depends=[backports checkmate data_table mlr3misc R6]; }; + paradox = derive2 { name="paradox"; version="0.11.0"; sha256="03v26qb0l8yhys7z5v2p9pwnc5wh26fvq4p0a0rh67qap6157dyx"; depends=[backports checkmate data_table mlr3misc R6]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.6"; sha256="01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="2.0"; sha256="18xw0s9lga2w981cx4daywp6b6gxvgl9mh68r13c5mmhis3b8v14"; depends=[mvtnorm]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; parallelPlot = derive2 { name="parallelPlot"; version="0.2.0"; sha256="04yr9fbvf3w0pw899zvk9ljjhsz775aiyhspm0bvaqaxzv8fkgx3"; depends=[htmlwidgets]; }; parallelly = derive2 { name="parallelly"; version="1.32.1"; sha256="146a9i999vrflr4g1fph1pgkl4bq0dw102bjw8pp1zy7kbsqbiii"; depends=[]; }; - paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.19.0"; sha256="10cl8vgcjncnry6qkkr41yyh8ngxxn81hwqqqix9g7pwpbf3c2mf"; depends=[bayestestR datawizard insight]; }; + parallelpam = derive2 { name="parallelpam"; version="1.0"; sha256="0fml4cgwqpwj8dqfbih1py2pvqksfiqd9v9442g0ls6kacjdmaph"; depends=[memuse Rcpp]; }; + parameters = derive2 { name="parameters"; version="0.20.0"; sha256="16y92q4h385sqc7xgdcrdmdvw0l8plxxbhcdsnx4gqqgm8di9l9p"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="1.0.0"; sha256="1zkwzmh3igkwfq87v3rmp3axfspl20qn4qmpyqql6ain564yyabw"; depends=[ggplot2 MASS]; }; paramlink = derive2 { name="paramlink"; version="1.1-5"; sha256="0a21cy8q3zv96zdq5q2hfkb2ga1fham00in7wfyyd9wpck9gp009"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.3"; sha256="0ypn0fdrphblw64sdnfmyf9q4zbakqvl4xzr451phvhx52n1gb73"; depends=[pedprobr pedtools]; }; @@ -13704,10 +13788,10 @@ in with self; { parsedate = derive2 { name="parsedate"; version="1.3.1"; sha256="1cfinqlbchmkhkgmdwiy3mnxb17lp02jfk2gpw56hq9vh6wimhqz"; depends=[]; }; parsel = derive2 { name="parsel"; version="0.2.1"; sha256="0p5w7gdnakkgh36p3mknlz0s8a0sawiwyas442zcxy35x3kymnyf"; depends=[lubridate purrr rlang RSelenium]; }; parsermd = derive2 { name="parsermd"; version="0.1.2"; sha256="15fy5vgzbrxq1yj4bgd0q1n5gjwvfh6s03ar5mj3hpp5mz6qmsdg"; depends=[BH checkmate cli dplyr lifecycle magrittr pillar purrr Rcpp readr rlang rmarkdown tibble tidyr tidyselect withr yaml]; }; - parsnip = derive2 { name="parsnip"; version="1.0.2"; sha256="171crglp6ncy41iyb60gj6xp7zn2vnbffgbgpszrahf6j2hhxvw4"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr pillar prettyunits purrr rlang tibble tidyr vctrs withr]; }; + parsnip = derive2 { name="parsnip"; version="1.0.3"; sha256="1s1d5zjwag5a13y67l7sz4zj1w0dv0k7vpb6inz4x87d5rgchfi1"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr pillar prettyunits purrr rlang tibble tidyr vctrs withr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partR2 = derive2 { name="partR2"; version="0.9.1"; sha256="06ky0hhrq0mcsn9rwrzvwn0rrjj0l8rxs0hqp10668gdq5hjk8bn"; depends=[dplyr ggplot2 lme4 magrittr pbapply purrr rlang tibble tidyr]; }; - partialised = derive2 { name="partialised"; version="0.1.0"; sha256="19rm2fcv5am5512y1p77nss715dcdfrg3hvrgy2b49jr0f9i8d25"; depends=[pillar purrr rlang vctrs]; }; + partialised = derive2 { name="partialised"; version="0.1.1"; sha256="0rb9d5p21f1y0c8arwh1lf516vw30qinf15rkrv49qw97dvvb9db"; depends=[pillar purrr rlang vctrs]; }; particle_swarm_optimisation = derive2 { name="particle.swarm.optimisation"; version="1.0"; sha256="0y3pq129irxifiph40mf027gbc02c4pwkchs305pcbj3vr9pwsyw"; depends=[R6 rgl]; }; particles = derive2 { name="particles"; version="0.2.3"; sha256="0x76q9qcfaraiy0w8hrdk4ws16w1a8m363a3l4cphpi6xi329027"; depends=[cpp11 digest dplyr igraph mgcv rlang tidygraph]; }; partition = derive2 { name="partition"; version="0.1.4"; sha256="19f1j6hm35c57r2x51nh2kns3jyd85xxg06lgd94kb13brr1hk2v"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; @@ -13717,6 +13801,7 @@ in with self; { partitions = derive2 { name="partitions"; version="1.10-7"; sha256="1kxiy1wl7dr39kyfg2y9hd67s32knd83r2jsb7j9p3vg8iqq7yqb"; depends=[gmp mathjaxr polynom Rdpack sets]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; + parttime = derive2 { name="parttime"; version="0.1.0"; sha256="0zc0gbmycbrp3f0wr5mw3mp6ighvrb0rw3d8ilr4b1kqa20ws54q"; depends=[crayon lubridate pillar vctrs]; }; party = derive2 { name="party"; version="1.3-11"; sha256="174cc5b5qwv9r4qmm65c4n4zk6cxjf6vjmznpp8cc2ylflbim91y"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.2-16"; sha256="1cnx6qbw5svwh3nq40n5vr20179ihd3jgznm7mz4k50qkkid8hz6"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parzer = derive2 { name="parzer"; version="0.4.1"; sha256="0v97cfjkggkdhv8gc0ffgbijgwxzpz7n44z7gsmkvggjj3wsxvpr"; depends=[Rcpp withr]; }; @@ -13727,7 +13812,6 @@ in with self; { password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; pasteAsComment = derive2 { name="pasteAsComment"; version="0.2.0"; sha256="1837s2bfxpgjs15q1brr166iyar2xzvmdj0qxknb8hnqrmi207mf"; depends=[clipr rstudioapi]; }; pastecs = derive2 { name="pastecs"; version="1.3.21"; sha256="0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"; depends=[boot]; }; - patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; patchDVI = derive2 { name="patchDVI"; version="1.10.1"; sha256="14zhl2skj20gc09ycrycdq2slqrpbh6nf0lcsxf55kvshnwnmknc"; depends=[]; }; patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; patchwork = derive2 { name="patchwork"; version="1.1.2"; sha256="0xw9mh1qakj131nw98icxrxwvdlwy2ngwvmagrqr3m84sz9dbffs"; depends=[ggplot2 gtable]; }; @@ -13736,14 +13820,14 @@ in with self; { path_chain = derive2 { name="path.chain"; version="0.2.0"; sha256="1p28mcar4krgvkgn02xrlwcpzchnppn2l2k2iwh511c3qrfpy653"; depends=[logger rlang stringi]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; pathfindR = derive2 { name="pathfindR"; version="1.6.4"; sha256="140m63cwwk3xrmgr8jrxa0nv0wjmkzqlrdbgq6g2g837khwfjj7y"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; - pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.2"; sha256="0p0infg5hxw40bacgni5w1a8xb29wc0xrd8mjsnlfarr8wygd9fl"; depends=[]; }; + pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.3"; sha256="1gvlfkpk4fxh10vs792qdj5k3yvlc3dizh780c5a2xvdy1jj6gwm"; depends=[]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.5"; sha256="1nxcnmz9r99znqmwibvvix7h3acp22cs6wp1jmp21p862ncabll8"; depends=[lavaan]; }; paths = derive2 { name="paths"; version="0.1.1"; sha256="19fl54r2myb9ky8ffnx71xw23a8dlg15sj9v36xcpv79z61ryws9"; depends=[BART boot gbm ggplot2 metR pryr tidyr twang]; }; - pathviewr = derive2 { name="pathviewr"; version="1.1.3"; sha256="1xx73ah9af1q422rf346ip3w8jbxvs14qn9jv6bj7vnpw3nxndxq"; depends=[anomalize cowplot data_table dplyr fANCOVA ggplot2 lubridate magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; + pathviewr = derive2 { name="pathviewr"; version="1.1.5"; sha256="0b518jhksv790zzgmykr5panh8dgl8v4abbxlbr1zayhbfz213c0"; depends=[anomalize cowplot data_table dplyr fANCOVA ggplot2 lubridate magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; pathwayTMB = derive2 { name="pathwayTMB"; version="0.1.3"; sha256="1zrs7l9vifrsixk20p0nxs6s8kadc3l3mj933s7ribaby2fb0r8m"; depends=[BiocGenerics caret clusterProfiler data_table glmnet maftools pROC purrr randomForest RColorBrewer survival survminer]; }; - patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.2"; sha256="0w85y74n46665w8d4lv9pb88hmarn6ax9qsv0sl1xw1q7iby2pzx"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; + patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.5"; sha256="0kb84jpcmnyakggbb8m96qbbc3a7yj1025k13nhirx4i459d0913"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; patrick = derive2 { name="patrick"; version="0.2.0"; sha256="1ghjvm82hgal091hfjfyz3ndg32xsggip5pp4y0g7rmrzpfjmpjs"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.3"; sha256="072wjjinbkvrijqb90hk6h964m1h2gznj69jq3pidbzcr1xl93g1"; depends=[abind ClusterR dplyr geomorph imager magrittr Morpho purrr raster rgdal RNiftyReg sp vegan]; }; @@ -13753,7 +13837,7 @@ in with self; { paws = derive2 { name="paws"; version="0.1.12"; sha256="0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; paws_analytics = derive2 { name="paws.analytics"; version="0.1.12"; sha256="04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"; depends=[paws_common]; }; paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.13"; sha256="0qxrjmqywp4ychjwfbripfin4vlv0k041ycmr3pjr6p3dg910i3w"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.5.1"; sha256="17cfvx2ma0zcrj3grpsadx8p5r97s2z6c23qqmzry7ys9mn6k9f1"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; + paws_common = derive2 { name="paws.common"; version="0.5.3"; sha256="090csb0wjnsfhkphws5anrnml18y1k54yi48lxav8wp5kqj4wlb6"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; paws_compute = derive2 { name="paws.compute"; version="0.1.13"; sha256="1s7g4y2h763xf32p08drs3ygkfqb2zjikkgxb7yl91gk13zp7kjm"; depends=[paws_common]; }; paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.12"; sha256="0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"; depends=[paws_common]; }; paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.12"; sha256="0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"; depends=[paws_common]; }; @@ -13766,7 +13850,7 @@ in with self; { paws_security_identity = derive2 { name="paws.security.identity"; version="0.1.12"; sha256="092lz2ipn5iqr593x7ra8c0bj64yf6315mdc3llgwrjyb4vfxif9"; depends=[paws_common]; }; paws_storage = derive2 { name="paws.storage"; version="0.1.12"; sha256="06m887vpqp5d6k3zxdlga599dsv8v3rladk7xqaxqnld1f17am04"; depends=[paws_common]; }; pbANOVA = derive2 { name="pbANOVA"; version="0.1.0"; sha256="0m7946jv4zbs0k74klxkl8nbwirc48g6paqrfl5fadkd17xxqq2j"; depends=[DescTools dplyr lmtest MASS plyr Rmisc]; }; - pbapply = derive2 { name="pbapply"; version="1.5-0"; sha256="0m8a0ygwl98cs0vcha5gs9f7z8whcplwxhravhs9bfp5hvigxzgg"; depends=[]; }; + pbapply = derive2 { name="pbapply"; version="1.6-0"; sha256="0qbzqgxz3lm97y0k9v2radqblzb4r5zkfrjw5wj1a91dvxz3xhg8"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; pbcc = derive2 { name="pbcc"; version="0.0.3"; sha256="11qnmxky23s6dak0kpd22h9la7khn4zwr9msk0liry8i6slwhchg"; depends=[ggplot2 ggpubr qcc rgenoud]; }; @@ -13810,14 +13894,15 @@ in with self; { pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; - pct = derive2 { name="pct"; version="0.9.3"; sha256="1y3cmqirh003hyg80bnl0rpbcp9h9bzlv0lbjxq0wmvsb84hbqbn"; depends=[boot readr sf stplanr]; }; + pct = derive2 { name="pct"; version="0.9.7"; sha256="08cw92b5kr3fwz9dj1hnfxiygcg6aqka4v90i7km86bsbicvia7j"; depends=[boot crul readr sf stplanr]; }; pcts = derive2 { name="pcts"; version="0.15.5"; sha256="03iammgirj3vnrwh0fxvy3r08z3da23jbjkb2fzpya1pxfb2rnjq"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; + pcv = derive2 { name="pcv"; version="1.0.0"; sha256="1kszyww5n8j7kfb6s5wvn19ch7h1d64dhqgz6wvgx6vp21ya6qks"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.8"; sha256="1sjlcd8g564jrwmlhpjypgwqywz3ggq4lb6xwqzc1basbsx5zfrn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; pda = derive2 { name="pda"; version="1.0-2"; sha256="1y067d3v9qlirawy01nmsh4fdynfh80mvg9r55kkban2z7xhql9j"; depends=[data_table httr jsonlite Rcpp RcppArmadillo rvest survival]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; pder = derive2 { name="pder"; version="1.0-2"; sha256="0qrf0igxzalvsanj1mqryi0xl9lq0wlpg8bbgasbx3ibq4yqwn0s"; depends=[plm]; }; - pdfCluster = derive2 { name="pdfCluster"; version="1.0-3"; sha256="13m7b2wivvf58vyqbysj4r04w0nj2b5x0xnaxip712a6c66x1h7l"; depends=[geometry]; }; + pdfCluster = derive2 { name="pdfCluster"; version="1.0-4"; sha256="0d52xmrzsjc51j0gzd3729rjqh391643yq840b6hlpc2w4ycc46m"; depends=[geometry]; }; pdfetch = derive2 { name="pdfetch"; version="0.2.7"; sha256="1pyx6h9s0y2qx3wrdjk5rfg2wh023zjhrkryvdaynz667rjxgr0w"; depends=[curl httr jsonlite lubridate reshape2 stringr XML xml2 xts zoo]; }; pdfminer = derive2 { name="pdfminer"; version="1.0"; sha256="0hm9nalazqcg4n1sqcjan8wm1rvv4lnflmlkrqkj5yhhmza7xkfh"; depends=[checkmate jsonlite]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.3.0"; sha256="0mk1s8b7cdz025xn9kg5xnw388sndhjm80ckf71daxviknrzcscf"; depends=[pdftools stringi tibble tokenizers]; }; @@ -13840,19 +13925,18 @@ in with self; { pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.4.0"; sha256="0x1djd9kjnbp8wrx2iy1hh3psf77lmhyipzdbyysd95ym6wkldvk"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; - pedbp = derive2 { name="pedbp"; version="1.0.1"; sha256="0wc8y9wfv7spwww4l15nmjhlmlx8mpm0l6msn3pymv5kw7jipdip"; depends=[ggplot2 scales]; }; + pedbp = derive2 { name="pedbp"; version="1.0.2"; sha256="0yc6185i3jzpwkpmkm38vggyfba0pvz6hvzqfkl6ch591dvkldch"; depends=[ggplot2 scales]; }; pedbuildr = derive2 { name="pedbuildr"; version="0.2.1"; sha256="19yzfg5jms2qnww4p8npmk9815hrgqsbd49h8pi62yy9kjqnccai"; depends=[forrel glue pedprobr pedtools]; }; pedgene = derive2 { name="pedgene"; version="3.6"; sha256="0h66yshna10fannpdvi0m83s53b1hmnjym2mvc7ypcgr1glq6j13"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4.2"; sha256="1b3zhjn6sl1pnkfqim6xzk6qdak6acdpim585xhjl1rbc41540qx"; depends=[HaploSim Matrix reshape]; }; - pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; pedmod = derive2 { name="pedmod"; version="0.2.4"; sha256="1xr98vp2s3s2cw4bjdw6156zas15jxvp9fbyz9rxd68i3zrblplx"; depends=[alabama BH psqn Rcpp RcppArmadillo testthat]; }; - pedmut = derive2 { name="pedmut"; version="0.3.0"; sha256="0w42jhgrkf5f1baz2jb94fyccm0wx94vg0g1px4p39jvpknz9d6a"; depends=[]; }; + pedmut = derive2 { name="pedmut"; version="0.4.0"; sha256="19m09mwxs58qsbc7h9vjax6dhjlcz65razhmdb6l5y8w1dq2v9gw"; depends=[]; }; pedometrics = derive2 { name="pedometrics"; version="0.12.1"; sha256="06s1iyv2nldqqkh1n3cgl3a7ribk17kyadgfx76lpgy016fi7vz5"; depends=[lattice latticeExtra Rcpp]; }; pedprobr = derive2 { name="pedprobr"; version="0.7.0"; sha256="089wrsx8qx2isz20xqjmnficzb62n8afyskkbz726dymf942pk3a"; depends=[pedmut pedtools]; }; - pedquant = derive2 { name="pedquant"; version="0.2.0"; sha256="1idi1vfhc8hs6lm6xzcn5jkgbjsn3fcj6c1c3c5ifzq1jckg48fa"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR webdriver xefun xml2 zoo]; }; + pedquant = derive2 { name="pedquant"; version="0.2.1"; sha256="0kg29nsywrx8xczk6zw2xl83f5g0wxf6iwkhgawq1am3anr64ck6"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR xefun zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.1.0"; sha256="19vbfn8dy7a4hrrv8zsja721lchng55gvc26xlkzx5dl96d2xp9w"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; - pedtools = derive2 { name="pedtools"; version="1.3.0"; sha256="0nn6vax46b8lrqrkq153kvnd9708zfz0wn07qkfhi3dj73inh8c9"; depends=[kinship2]; }; + pedtools = derive2 { name="pedtools"; version="2.0.0"; sha256="0svr7n5vy315dw3chj4q0xyc1wvc1z7kgb7n6izzgzjx4vaykwnp"; depends=[kinship2]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.1"; sha256="0ngd0laqbs139ji9hm9kwsm9rm56agw2yyfcplxgqva936l93fl7"; depends=[ape]; }; pell = derive2 { name="pell"; version="0.1.0"; sha256="1621lnv6sii072did3kj6wapgh9iiqajayvkrmz7q86bp89405sm"; depends=[]; }; @@ -13866,13 +13950,13 @@ in with self; { penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.3"; sha256="1mvp9qzk9gw8z13rsjkxgb98s6jqd8anzggfw71pziif0fd6zv10"; depends=[corpcor e1071 MASS mlegp statmod tgp]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2020.5.13"; sha256="0297rp5zn6d0axl44i3baq2vqvhrx6s8irrysvqdcx1rkishf4j0"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="1.2.2"; sha256="05fx8avdqhgshvx6q5yhkndjg77szls8i2n263kqzyk7qf8p0c4x"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="1.3.1"; sha256="139hdgdpl55ag9azdm2rklnjmbg251517k4mi56xphzn78ji6ncc"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; penppml = derive2 { name="penppml"; version="0.2.0"; sha256="0r3wypzndg07vrbifs1h5wm4vcsd27z0gjhvlhgwq0pm1qgsgssc"; depends=[collapse devtools dplyr fixest glmnet magrittr matrixStats Rcpp RcppEigen rlang]; }; pense = derive2 { name="pense"; version="2.1.0"; sha256="1gz9p3khmv6v4m9aw314zdxdr33qmddb4s2pads0lm5iylngjd4j"; depends=[lifecycle Matrix Rcpp RcppArmadillo rlang]; }; - pensim = derive2 { name="pensim"; version="1.3.3"; sha256="1raap4zlqgcqh8x83kp1ss5qcn0p7bwribp4dhfhrh9rl92hh92a"; depends=[MASS penalized]; }; + pensim = derive2 { name="pensim"; version="1.3.6"; sha256="18z43p1iswmnvwaf3k5vhv6rzzmfn618har0a0bl9j5nfzx20rpx"; depends=[MASS penalized]; }; peopleanalytics = derive2 { name="peopleanalytics"; version="0.1.0"; sha256="0ay85yxx30p4i8icn8l8ppjddiwkbw1g6ymnmvw5gnd9hgmwbrx0"; depends=[]; }; peopleanalyticsdata = derive2 { name="peopleanalyticsdata"; version="0.2.1"; sha256="0ig65y4sl6wagzcvj8wwjw2dblb61hgbsqvp76wvxbhga1q0wnpf"; depends=[]; }; pepe = derive2 { name="pepe"; version="1.2.0"; sha256="1ihms63crxq0k7hd2yjyxmfw0yfy668srw012vi8mf8p31jdcr3j"; depends=[dplyr ggplot2 psych tidyr]; }; @@ -13886,7 +13970,7 @@ in with self; { perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.1"; sha256="1i1h5k2aqaqygd8gzq2bmz266mjzdi2mfikkz6hzmhi2il8708w9"; depends=[ape phytools Rcpp RcppArmadillo]; }; - performance = derive2 { name="performance"; version="0.10.0"; sha256="15yx75y17h3l1v7jpp8zbygy64lz7kds5yrgd7wrzw56564d2rhb"; depends=[bayestestR datawizard insight]; }; + performance = derive2 { name="performance"; version="0.10.1"; sha256="1m2zzznfbla8qdm0kxbj5vp431kpygpi4d70042hkg1ly3fyg7pz"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; periscope = derive2 { name="periscope"; version="1.0.1"; sha256="06rhi77a7561a0k99sn9h0pxfgar4s8iyg2mligyig2z8j66dcqb"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; @@ -13937,7 +14021,7 @@ in with self; { phangorn = derive2 { name="phangorn"; version="2.10.0"; sha256="1kjxp352jdk1amxpk9jrql490d0qy79zm65y8szyxrm1adqghlyi"; depends=[ape digest fastmatch generics igraph Matrix quadprog Rcpp]; }; pharmaRTF = derive2 { name="pharmaRTF"; version="0.1.4"; sha256="1h16r4yhlm6mbwq3k24ssm70bsrg2hvykqh8dayigz5wi2nq5c1f"; depends=[assertthat huxtable purrr stringr]; }; pharmr = derive2 { name="pharmr"; version="0.73.1"; sha256="1g37p9v7kn1x4f2fw8lz30cvfl11b8v2fignddfymllzwkz7xmgp"; depends=[altair reticulate]; }; - phase = derive2 { name="phase"; version="1.2.5"; sha256="0nnpki44qyikavx8dpayn0jk0jbznkb1w4jcp06j5b8c70a04gc9"; depends=[behavr circular lubridate plotly pracma signal zeitgebr zoo]; }; + phase = derive2 { name="phase"; version="1.2.7"; sha256="168b76kqfzazaszc2k6iha58pffi1g6rpq69ndr3p2xscvb9jcy8"; depends=[behavr circular lubridate plotly pracma signal zeitgebr zoo]; }; phase1PRMD = derive2 { name="phase1PRMD"; version="1.0.2"; sha256="0gr73nsp0an0ci6l86h9fw6l791jdw0b1497qi58w25zypggdyac"; depends=[arrayhelpers coda dplyr ggplot2 gridExtra kableExtra knitr MASS plyr RColorBrewer reshape2 rjags]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.9"; sha256="0dnyqa6jias2jqjqjpiq32jnd21ghb2shw45vdq8b5xyb8rxclwj"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; phaseR = derive2 { name="phaseR"; version="2.2.1"; sha256="1gq882r4jkq8f0xm3qmjh4zx540sgpdhlj8894dhf5g6vhgaa1kd"; depends=[deSolve]; }; @@ -13952,14 +14036,14 @@ in with self; { pheno = derive2 { name="pheno"; version="1.7-0"; sha256="1hg2gqz3ibawn5ah1hffgfp15cis75nwd04jha09mjpkn1w8h9lg"; depends=[nlme quantreg SparseM]; }; phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; }; phenocamr = derive2 { name="phenocamr"; version="1.1.5"; sha256="1w9lzlmp4q2x12qhp4xmschcd79razy5fybq94381l7dshrwvzln"; depends=[changepoint daymetr httr jsonlite memoise MODISTools zoo]; }; - phenofit = derive2 { name="phenofit"; version="0.3.2"; sha256="1mmsaca52m4k73fbq8m29f118q02qps91glfxpw1jjbm5hqgazsv"; depends=[data_table dplyr ggplot2 gridExtra JuliaCall lubridate magrittr numDeriv optimx purrr Rcpp RcppArmadillo ucminf zeallot zoo]; }; + phenofit = derive2 { name="phenofit"; version="0.3.7"; sha256="1wmih8s56w54yi6wq5wrswi89i9wdyfsgz1xa1ca8vicmrn313br"; depends=[data_table dplyr ggplot2 gridExtra lubridate magrittr numDeriv optimx purrr Rcpp RcppArmadillo stringr ucminf zeallot zoo]; }; phenology = derive2 { name="phenology"; version="7.9"; sha256="0zacgrw5j6m5dhfkbbzawb832sp87nyp28g36nw150ha7q5qwjf2"; depends=[HelpersMG numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; phenopix = derive2 { name="phenopix"; version="2.4.2"; sha256="0rrp4ch32hzlm727xpwsvfsw7d4qypv7iiq8hrg9az6nb39pbvp7"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; phers = derive2 { name="phers"; version="0.0.3"; sha256="1gyigamjsyfkmflp1i654csfsarx6jq984jbhbgwnsz6br0xppzh"; depends=[BEDMatrix checkmate data_table foreach iterators]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; - philentropy = derive2 { name="philentropy"; version="0.6.0"; sha256="1dpf4hfflp4mcql4na46wzcq1flabkipiwyycz9wj5xbxlmcz2hk"; depends=[KernSmooth poorman Rcpp]; }; + philentropy = derive2 { name="philentropy"; version="0.7.0"; sha256="1dw46p2bk68hqbc44629lywg5r1mdaz37ahccgmsx07fg8rf4wnf"; depends=[KernSmooth poorman Rcpp]; }; phm = derive2 { name="phm"; version="1.1.0"; sha256="12g3pppy5hq5lwwbv511fx523cwn7gqg9fr861p8kmbvjwgpw1pp"; depends=[data_table Matrix NLP shiny smallstuff tm]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; @@ -13976,7 +14060,7 @@ in with self; { photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.5.0"; sha256="04i2bm1chwj4mjfrvbiwl8p9h0jz4j04g6fg80fmppyd5mznay6r"; depends=[photobiology]; }; - photosynthesis = derive2 { name="photosynthesis"; version="2.0.3"; sha256="1f90j1a140nsxnibg3hz3vmad4542vny5ab331i887nkg0f5n5ar"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; }; + photosynthesis = derive2 { name="photosynthesis"; version="2.1.1"; sha256="17ipcgk11fnfrka5x95s4x5hncbfa38laav91475ghsni3hll4ay"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit lifecycle magrittr minpack_lm nlme purrr rlang stringr tealeaves tibble units]; }; phreeqc = derive2 { name="phreeqc"; version="3.7.4"; sha256="1xhpbi76y87phss10zlxpcz3fm3md3y4lh2cvypnx5ccxfdzflyl"; depends=[]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-32"; sha256="1ga2pzksp97psqbl484fikfnr4bl3bgyys86wb3ya904xxwghy6c"; depends=[ape]; }; @@ -13986,7 +14070,7 @@ in with self; { phylobase = derive2 { name="phylobase"; version="0.8.10"; sha256="0jzr1gdvmi4l640hwwzh9bxqmpja69bn3ygnaqx37awvyh7khi2s"; depends=[ade4 ape Rcpp rncl RNeXML]; }; phylocanvas = derive2 { name="phylocanvas"; version="0.1.3"; sha256="1l5br500lwwf7vp8wph5ykpkpqd15lypvhzy0c1cc8g8c6f7pckn"; depends=[ape htmlwidgets phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; - phylocomr = derive2 { name="phylocomr"; version="0.3.2"; sha256="1qdhf6a7cqp12i4macy5wcbk6mf01fqbm4rc11yl63qr72zwrbhy"; depends=[sys tibble]; }; + phylocomr = derive2 { name="phylocomr"; version="0.3.3"; sha256="0l9ap65m927pqwxs051y4q7fmipn3kkpk1nkgis6q5fqgfxy0igi"; depends=[sys tibble]; }; phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; @@ -14009,7 +14093,7 @@ in with self; { picker = derive2 { name="picker"; version="0.2.6"; sha256="1n7h1lvrivy7czzhisd9p3g187ivcyhzyjj7ahkimyb296gy8z1b"; depends=[htmlwidgets]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.1"; sha256="1i9k88i0rqsbf2564ims69x1pind1xgvljaf9smnnjpi77442jiw"; depends=[rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.12.0"; sha256="0w4dgxkvi339lxj37hmaa5pwb3a8smk27drdidrg36rwjbkkai79"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.12.2"; sha256="0ky3nib84za7v27acpq5f5x8vpc6hsp5an7fid1vdzc6i1467mvr"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; piggyback = derive2 { name="piggyback"; version="0.1.4"; sha256="04d5rm6m94xiw70wh2wvdsd9zixkazsjl612afg5b0izw5snv7cy"; depends=[cli fs gh glue httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.8.1"; sha256="1v47dm2v4nlswd1gmgcx5c7yrgn1ksdfr9lqkc63jf2nkv6af1ig"; depends=[cli fansi glue lifecycle rlang utf8 vctrs]; }; @@ -14034,7 +14118,6 @@ in with self; { pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; piratings = derive2 { name="piratings"; version="0.1.9"; sha256="0krrcf2bwicdf9fn657vkcjg5zliwi82hw3xmaqi46mdix8896gh"; depends=[ggplot2]; }; - pirouette = derive2 { name="pirouette"; version="1.6.5"; sha256="0fw6hbpywmk1mqfxn480sh403afrmm8shlzcbwx32pjri9ajrx1q"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; }; pisaRT = derive2 { name="pisaRT"; version="2.0.1"; sha256="0g4z4ixg7bsig1rjhsymncmzpl135r6mr3pqlb60gmz11851bw9w"; depends=[]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="1.0.0"; sha256="1krf6zi238m275nxjlpyayv8y2drbgs2kg19dpkqm0lmlz5y5ar8"; depends=[Rcpp]; }; @@ -14050,7 +14133,7 @@ in with self; { pixmap = derive2 { name="pixmap"; version="0.4-12"; sha256="1v1a1adsgh5jlvvi98j4nhb1h681s97ip76zdrga12rlsjaahfw9"; depends=[]; }; pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.2"; sha256="0rappcycpkdfdivzl6nn3jq1f42r9jqqmkb33asvhmpjs35fyc3s"; depends=[]; }; - pkgbuild = derive2 { name="pkgbuild"; version="1.3.1"; sha256="0j6v5nbp8kg1m3j999gd1qsbdmqcqm1mf28ngmm177miwv8q4skw"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; + pkgbuild = derive2 { name="pkgbuild"; version="1.4.0"; sha256="1mjyln5njbvi0k97w8az2v5klmas6pqiz68mlylfll4nr503qzrm"; depends=[callr cli crayon desc prettyunits processx R6 rprojroot withr]; }; pkgcache = derive2 { name="pkgcache"; version="2.0.3"; sha256="0a50gnk68gdzmpd26qv3nsfc94gg6wyf2k3dacls1p8m1zbazpl0"; depends=[callr cli curl filelock jsonlite prettyunits processx R6 rappdirs]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; @@ -14060,9 +14143,8 @@ in with self; { pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkglite = derive2 { name="pkglite"; version="0.2.1"; sha256="0kc2h9d0kszvgc5bhzar4h4y604msmdmcc1agvn9irffm54x848d"; depends=[crayon magrittr remotes]; }; - pkgload = derive2 { name="pkgload"; version="1.3.1"; sha256="16k7n5hrwkzdwm54qyf5p6d1v5rf6vq688x48iylw6bygc6vgf66"; depends=[cli crayon desc fs glue rlang rprojroot withr]; }; - pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; }; - pkgndep = derive2 { name="pkgndep"; version="1.2.0"; sha256="17l9xpv7k3v4gy163cma3i1z87y10gxkw0a6w0b63djgjb3h0nhg"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; + pkgload = derive2 { name="pkgload"; version="1.3.2"; sha256="0bvbnj98b1yaiksdmfi017g2w3229a5pcsnpjamzrvpy5c1rml9m"; depends=[cli crayon desc fs glue rlang rprojroot withr]; }; + pkgndep = derive2 { name="pkgndep"; version="1.2.1"; sha256="1d2h1rgr803aw3n43iaacvqdv6b9ng97bwwsmrqc4rdyn0v532i7"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; pkgsearch = derive2 { name="pkgsearch"; version="3.1.2"; sha256="0j0rckhv1lcwlc05ng637n1jv9yyxb6iws91i3mz9qnl5wis8061"; depends=[curl jsonlite parsedate prettyunits]; }; @@ -14078,9 +14160,11 @@ in with self; { plainview = derive2 { name="plainview"; version="0.2.0"; sha256="06aghs1i0nbyyx5ll8fwzlz6dqhvckr63xvx8xv52i8m7x6rml4y"; depends=[htmltools htmlwidgets lattice png raster viridisLite]; }; plan = derive2 { name="plan"; version="0.4-4"; sha256="0xpl1hrq0cs1bi8wn1bb1d4lmb6g1dfzp8wlwa9g2bc12yw5q8hg"; depends=[]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; + planningML = derive2 { name="planningML"; version="1.0.0"; sha256="1qndw6jxk2jgliw996h2qkqqdd22ycc8kvs8z0jmk43dmiyjqzfx"; depends=[caret dplyr lubridate Matrix MESS pROC tidyverse]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; + plasma = derive2 { name="plasma"; version="0.9.21"; sha256="09in7kh2pfz0mkz0mic3nk4vxh7f9hmlv5xyv502d2q3cc5s26lm"; depends=[beanplot oompaBase pls plsRcox Polychrome survival viridisLite]; }; plater = derive2 { name="plater"; version="1.0.4"; sha256="0k2ha44ydcf180y44cgxd1haq55k96df39lahs6fji04imh75fii"; depends=[dplyr rlang]; }; platetools = derive2 { name="platetools"; version="0.1.5"; sha256="0qzq7r8ff27cwmxw649jvk9irm6ny2mz4ylmrpzdkahkskfb5arj"; depends=[ggplot2 RColorBrewer]; }; platowork = derive2 { name="platowork"; version="0.0.1"; sha256="09ps20lqli50nhhd3368fwf8cjsbshn428fbbbckbxnynxk5cwsy"; depends=[]; }; @@ -14098,7 +14182,7 @@ in with self; { plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; plm = derive2 { name="plm"; version="2.6-2"; sha256="0r0yhr00hfjh5nksp4pbkifjyf6jbxcq8hwjqlbdmvkz51fi4ayz"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; - plnr = derive2 { name="plnr"; version="2022.6.8"; sha256="0nm6zzahl3chgj1sj07izdxb8gprjca7nr87wxcjkzh19xrix7dd"; depends=[data_table digest foreach fs glue purrr R6 usethis uuid]; }; + plnr = derive2 { name="plnr"; version="2022.11.23"; sha256="1qi24zpvclamxxfppgll7rcmq7fysxf8chk6wlkwkzmjl5c3cs4n"; depends=[data_table digest foreach fs glue purrr R6 usethis uuid]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; plot_matrix = derive2 { name="plot.matrix"; version="1.6.2"; sha256="1fsgzjcllrdlf55ww7dhyx1iaa59y2a6f1b1591j8m8in1fh7n6n"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.4"; sha256="1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh"; depends=[misc3d]; }; @@ -14118,9 +14202,9 @@ in with self; { plotfunctions = derive2 { name="plotfunctions"; version="1.4"; sha256="0asmxw8283fpvl83h478j5nyg59xqifqaa8f2f6l199gvvswhhg2"; depends=[]; }; plothelper = derive2 { name="plothelper"; version="0.1.9"; sha256="1ibznjqs4gpbq1vx79gg0fkm842xfqgpmmgqji2m6s712j3bdn5k"; depends=[farver ggfittext ggplot2 gridExtra magick plyr scales]; }; plotluck = derive2 { name="plotluck"; version="1.1.1"; sha256="16wqj4xfa8b7kal6v8mp2zlhwf9l3y6y5n44qbpvy652gzb2rw2z"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; - plotly = derive2 { name="plotly"; version="4.10.0"; sha256="16iqj7sv49mva6siibsci7iijsbnk7pqvfns9al0k35w9mjmr6dx"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr vctrs viridisLite]; }; + plotly = derive2 { name="plotly"; version="4.10.1"; sha256="0yin1kid3a69fcwrrajwzqbhx4xc81x8p8m0yfh1fkm2rfhj22dc"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr vctrs viridisLite]; }; plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.2"; sha256="1c6i4dz5qmym1pcddgffcqgb76jz84252xldprg2caylrqvzv6b7"; depends=[]; }; - plotmm = derive2 { name="plotmm"; version="0.1.0"; sha256="01mi9znl471myq1yhfr8kdxpy0l67wgb3fid8gf2rzj5ph72b8hp"; depends=[amerika dplyr ggplot2 patchwork wesanderson]; }; + plotmm = derive2 { name="plotmm"; version="0.1.1"; sha256="0ad8bkfbwrcv447wgygsh1akzc7v8mxgfw2ywb5024jy39zbj56b"; depends=[amerika ggplot2 wesanderson]; }; plotmo = derive2 { name="plotmo"; version="3.6.2"; sha256="0g1mznijbi1ggn4pk6sqxqjqlrznfcg57l6p2672vcaqqn73mqyd"; depends=[Formula plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; @@ -14131,10 +14215,10 @@ in with self; { plpoisson = derive2 { name="plpoisson"; version="0.3.0"; sha256="15g5z07m0rf4hm6nynrb3bmsiakg7j790lsy30ksxswxrzwb9a1k"; depends=[]; }; pls = derive2 { name="pls"; version="2.8-1"; sha256="137jg3x7aqwyki29i4kzp8d6imn17nq6wzzfjw5q19pixvmpybp2"; depends=[]; }; plsRbeta = derive2 { name="plsRbeta"; version="0.2.9"; sha256="1r2vnssavd9921ll7a023asbzvnjr8ax7ilb861f9rkx2fxl8z0j"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; - plsRcox = derive2 { name="plsRcox"; version="1.7.6"; sha256="0dg4vpy15z4x61qyqc9nvqa1788g6phlrzjrk1xhns5x2h8cicma"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; + plsRcox = derive2 { name="plsRcox"; version="1.7.7"; sha256="1fkbynjlwi070yshnqcmw2f331yzr61f1mvm5dbw3iwg9ldhcbwr"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.5.0"; sha256="10zbl8y61jdsbhz8dqfd4r7dhzkkr0a02v94d3pnk2v89n5nf7ls"; depends=[bipartite boot car MASS mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.9"; sha256="10hjyngz6yq957gk7b62158fd08ajfb0mps55y2216f7886x9ljb"; depends=[bdsmatrix genalg MASS MSQC mvtnorm pls praznik progress]; }; - plsdof = derive2 { name="plsdof"; version="0.3-0"; sha256="1axi8bailiq9mjs0dvasy895b7c62114hdsaygxwz4zymfa6a3ny"; depends=[MASS]; }; + plsdof = derive2 { name="plsdof"; version="0.3-2"; sha256="1bqk98f9zyi4hvna1sfx4fwiivndlwanjaphlqa03bg6bghcj60p"; depends=[MASS]; }; plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plsmod = derive2 { name="plsmod"; version="1.0.0"; sha256="1fyv2v3jmf1hdii9z477ijy5d9gvpc3jg9cyl9lbplgc18l2pd2b"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; @@ -14148,7 +14232,7 @@ in with self; { pluralize = derive2 { name="pluralize"; version="0.2.0"; sha256="1s3jp41j8c03qb5zisj6m12ky7cz3n71d6p5apz0r0yn35inrhah"; depends=[V8]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; - plyr = derive2 { name="plyr"; version="1.8.7"; sha256="0zz88q055c38b9xqzfg1mwm7ikxzlyx3pnk16sfa8dbh2pqxm7vx"; depends=[Rcpp]; }; + plyr = derive2 { name="plyr"; version="1.8.8"; sha256="030706kwgqa2s5jd93ck271iqb0pj3fshrj9frg4wgp1pfs12cm7"; depends=[Rcpp]; }; pmc = derive2 { name="pmc"; version="1.0.4"; sha256="0y2h6r8dx721n0wwbc3i5j50j694kxanc4vxwr07939145bvpfac"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; @@ -14158,14 +14242,14 @@ in with self; { pmledecon = derive2 { name="pmledecon"; version="0.2.1"; sha256="10yry425y2ghcnp3mrjharf4blcqvwnxsm7kz90mzfq91qg4q5lv"; depends=[rmutil splitstackshape]; }; pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; - pmparser = derive2 { name="pmparser"; version="1.0.10"; sha256="0p8fd4xrfvn27739m1rsal8sgddycbjzla5i2v0jkrkjr76sakl3"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; + pmparser = derive2 { name="pmparser"; version="1.0.13"; sha256="1c58kdy25hjd0glw6hym082jbp8jjvxdn6j3kg859w4pf6kssm57"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; pmr = derive2 { name="pmr"; version="1.2.5.1"; sha256="14m3y1sywnd77gyifz2nv5q7h85f81wl5c8glvc100zgljvbgwvc"; depends=[]; }; pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.2.3"; sha256="09hnkzxwbj025an5kn91sw1sanxlcnmsi9wz8545fkcna78384zk"; depends=[chron data_tree DiagrammeR dplyr ggdist gghalves ggplot2 ggrepel gridExtra magrittr MASS stringr tibble xml2]; }; pmxpartab = derive2 { name="pmxpartab"; version="0.5.0"; sha256="13r4xy0jvxdwjz3gic67fzgq87v18vs7df1ggd3hq89h6f28fxar"; depends=[data_table htmltools knitr table1]; }; - png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; + png = derive2 { name="png"; version="0.1-8"; sha256="077nca3x0l6mq2g6izknzcn994bqs3nfqk7wscrjbfk2dnxzldjs"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.6.0.1"; sha256="05kbkyrds430v729hi56q48yfwfi5m1f371gpb4h417z5fj6137d"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; @@ -14190,20 +14274,21 @@ in with self; { poistweedie = derive2 { name="poistweedie"; version="1.0.1"; sha256="0236cz8fn3la7df8mk1la8hmr0zzjc1majnq8p0c8grma833j6kp"; depends=[]; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; polaroid = derive2 { name="polaroid"; version="0.0.1"; sha256="0m3jbiz4n7mgbbdkd28m6dqsclyjcgshpxd6ws8df7zchx7fch07"; depends=[argonDash argonR colourpicker ggplot2 hexSticker png shiny shinyWidgets]; }; - policytree = derive2 { name="policytree"; version="1.2.0"; sha256="0ixw6b1zy4h51dzhmrfsghnqxm3mw221v5armsxnc88xpw2rac93"; depends=[BH grf Rcpp]; }; + policytree = derive2 { name="policytree"; version="1.2.1"; sha256="1a0rfpn7dd8qsgaz5gfxpip7i897j8lmb86sjmpdafdyw5p3fl8m"; depends=[BH grf Rcpp]; }; polimetrics = derive2 { name="polimetrics"; version="1.2.1.14"; sha256="0zzqzcfmvb6a9lav5sdgzhx4637r068q3kyjqk1ykdjg2d7s7lrv"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; polished = derive2 { name="polished"; version="0.7.0"; sha256="0dvm76q101a9knh8kl5xfm7hpnmyggxkjzx3z749wmbc0p0h7jxl"; depends=[automagic digest dplyr DT htmltools httr jose jsonlite lubridate otp purrr rlang rmarkdown shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; polite = derive2 { name="polite"; version="0.1.2"; sha256="0ms4814aszfq5b8nlqsvnvnwpzpsqhsxr4z78hl6aknl0201lm94"; depends=[httr magrittr memoise ratelimitr robotstxt rvest usethis]; }; politeness = derive2 { name="politeness"; version="0.8.7"; sha256="05c606cra65cizxi266x2ka7bh911ipdy62sdbg47zi90nmcpnci"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; + polle = derive2 { name="polle"; version="1.0"; sha256="11585rm5pw41nbwsgm5zx0vlnrj25fjg44ps68jjyvdzs8191fhl"; depends=[data_table DynTxRegime future_apply lava policytree SuperLearner survival targeted]; }; pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollster = derive2 { name="pollster"; version="0.1.4"; sha256="1nvkskqyxng7r4c9z59s5mg9gk8rvd70bd5cfr3wnhps713sripi"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; polmineR = derive2 { name="polmineR"; version="0.8.7"; sha256="0b4m7xywvk3g8x9m3xb3nivbh0x6hvan51j444i2q2la6myrnm62"; depends=[data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB rlang slam stringi tm xml2]; }; - polspline = derive2 { name="polspline"; version="1.1.20"; sha256="1dd1jwiaglkkhajzvqfkd1x5r3wzjlk5ww0yxzmns0s1kr74i4k9"; depends=[]; }; - polyCub = derive2 { name="polyCub"; version="0.8.0"; sha256="1f63ikiz988hdihvgd5f2p897qfgv54ysgp2h8avmlc4cj6hgkgl"; depends=[sp]; }; + polspline = derive2 { name="polspline"; version="1.1.22"; sha256="0ys5sxr5q55ip49dsc3kbgcr3bn9dj5bblmshwm4jz8d0a7ikwmj"; depends=[]; }; + polyCub = derive2 { name="polyCub"; version="0.8.1"; sha256="09a4n69f9m5y57wkxlhwn5xfhzpqrcyzfc6n5zywn5jkj5h7wijl"; depends=[sp]; }; polyMatrix = derive2 { name="polyMatrix"; version="0.9.16"; sha256="13amrjl0nsyz6d9c9xxgnlkhdiicy8rx27ds5k47r8x48386vz14"; depends=[Matrix polynom]; }; - polyRAD = derive2 { name="polyRAD"; version="1.6"; sha256="1xvhjzryf35vrnf6iz82g14vbmbbm4g88il02ss5pmvsgxq70x5n"; depends=[fastmatch pcaMethods Rcpp stringi]; }; + polyRAD = derive2 { name="polyRAD"; version="2.0.0"; sha256="12qlws0d6s94rand1a7azd7yv22qzij1aqmhrvw4az0y7jy2wka4"; depends=[fastmatch pcaMethods Rcpp stringi]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0.2"; sha256="1rn1bryxxzsgi85kw4glmk10z61pqyxj79ngdl81b67vrw23fpxw"; depends=[]; }; @@ -14224,9 +14309,9 @@ in with self; { pomdp = derive2 { name="pomdp"; version="1.0.3"; sha256="1k0ysy0br5rff7jzz05gfwliqn668jd41cjp2mjs27qzgaazip7r"; depends=[igraph pomdpSolve]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.1"; sha256="0fkh2xamhgrh743b06mi6m7fg3bw989hxmwkf00bq6y7dr9c168b"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; - pomp = derive2 { name="pomp"; version="4.3"; sha256="0581b1q2scmr57kr83kb3k1dp4bz3jny6h5v6lm7mxsychca4dl7"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; + pomp = derive2 { name="pomp"; version="4.4"; sha256="11c0dzs34ks1vp0gdbzg6ls5q4z3gyd9m2kbdi9nrspammg0h138"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; - pompp = derive2 { name="pompp"; version="0.1.2"; sha256="05zy47zaifwj1qvvgxpvari26ac354axijqbx5522mbl27x3c6sf"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; + pompp = derive2 { name="pompp"; version="0.1.3"; sha256="0svlzhsm1kfwgjpx2cas63jm8v5b9cxlksipv758vxlnc3jiarvk"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; pool = derive2 { name="pool"; version="0.1.6"; sha256="1qfraam1rc2r4mn7yhhfv8lhhc4dzgq0v1y97n4h2z3mgxn5zgnd"; depends=[DBI later R6]; }; poolVIM = derive2 { name="poolVIM"; version="1.0.0"; sha256="19yw6pp5l3jmla4wjbvpjq132f645yks49pzsdv123f3qfr8f0m6"; depends=[EmpiricalBrownsMethod Hmisc ranger]; }; @@ -14255,7 +14340,7 @@ in with self; { populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; porridge = derive2 { name="porridge"; version="0.3.1"; sha256="0m0aa7cqfkd45csgs0lapf72adjmf0xaii1klnk3kd4kxbclx8a6"; depends=[MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; port4me = derive2 { name="port4me"; version="0.5.0"; sha256="0fs279qmxn0hz6w3app8dfcdhshymqrkgj53il4dzlw27ascw105"; depends=[]; }; - portalr = derive2 { name="portalr"; version="0.3.10"; sha256="0bgk25j528p972hxcymvvk1x6dhir5gb9y15rlhwxax9bh52dgiq"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; + portalr = derive2 { name="portalr"; version="0.3.11"; sha256="0li3simzryaakb96z6k64d2fzz1r5wpyzy9ib04xq8dvsfypb9fx"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; portfolio = derive2 { name="portfolio"; version="0.5-2"; sha256="13w8gyaphg0qspjl6d0jh0jf3wvz4agy8vzkriba0k59qhdbi52f"; depends=[lattice nlme]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.4.1"; sha256="1qf7bbf3frivp0q55h3fj9ki2igaa6djpg3zv1x6hh53nl25dvbb"; depends=[digest evaluate ggplot2 pbapply PerformanceAnalytics quadprog quantmod R_utils rlang xts zoo]; }; @@ -14265,6 +14350,7 @@ in with self; { postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; postHoc = derive2 { name="postHoc"; version="0.1.3"; sha256="1l7r9md9iyav5vvjykpsnqv9whspzcmnppfpqm6qy5s5vk6b8zfd"; depends=[igraph multcomp]; }; postcards = derive2 { name="postcards"; version="0.2.3"; sha256="0kc8nbrqw5h14qw47rxl20yz9q0s8gk2g3lg7kcgsx7f1q514qsw"; depends=[rmarkdown rstudioapi]; }; + postdoc = derive2 { name="postdoc"; version="1.1.0"; sha256="02j7jsjmyd643bimhvvaaak7nx6w99shas8l588ny2abygxb915m"; depends=[jsonlite katex prismjs xml2]; }; posterdown = derive2 { name="posterdown"; version="1.0"; sha256="13plrrnylw3yldm0md1gr5drccfjk9f2wwlhz6lrmb3px7w5nqs0"; depends=[pagedown rmarkdown yaml]; }; posterior = derive2 { name="posterior"; version="1.3.1"; sha256="0yjdjdr4ifssnml1niqyxs6jsqpci8rx8va0pinyhjx2j017h03h"; depends=[abind checkmate distributional matrixStats pillar rlang tensorA tibble vctrs]; }; postinfectious = derive2 { name="postinfectious"; version="0.1.0"; sha256="1v327zxxiwc1cdksk6s39lkkgck5dxg169pp3jiqmm7xs35dcl6y"; depends=[]; }; @@ -14289,6 +14375,7 @@ in with self; { powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbiR = derive2 { name="powerbiR"; version="0.1.0"; sha256="0b7409j55m5nnp5nm9sgij635xpm39qkm3hajg3x0x8zxvfczfz6"; depends=[AzureAuth data_table httr jsonlite]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; + powerjoin = derive2 { name="powerjoin"; version="0.1.0"; sha256="19b7y7aqf5159x2fi5nrx179nc673qqzkv9c8kgw85hmmjzjgnb3"; depends=[cli dplyr glue purrr rlang tibble tidyr tidyselect vctrs]; }; powerly = derive2 { name="powerly"; version="1.8.6"; sha256="0vc2wpx2b4i9vx9jvvlywq5w4dx22bn4r9fcwz123h1m09252ng8"; depends=[bootnet ggplot2 mvtnorm osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.6"; sha256="18cq3zsdvzmqjp0niq0libjk4riarmiar3h6lifq54spqgrvvxh2"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; @@ -14304,13 +14391,13 @@ in with self; { ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; ppmSuite = derive2 { name="ppmSuite"; version="0.2.4"; sha256="0qpd5a35x7fbdjwfr0cnx00wf0hwzlah6z3giajgcv0d7wzrvczn"; depends=[]; }; ppmf = derive2 { name="ppmf"; version="0.1.3"; sha256="0xphk27frlcr87jwjbgwf77c8bhv0nswmffj9ny2vd1b176bi9xn"; depends=[censable dplyr magrittr readr rlang stringr tibble tidyr zip]; }; - ppmlasso = derive2 { name="ppmlasso"; version="1.2"; sha256="0pdafk8f8z92v4rs0n78sj9gy80l2nr9n91y2icbchgh8fa1hi1m"; depends=[data_table lattice plyr spatstat spatstat_core spatstat_geom]; }; + ppmlasso = derive2 { name="ppmlasso"; version="1.3"; sha256="1kqqb7wxqdmymfn4hkdmqakj3n64bbg2acf671asm2civ94rmc1m"; depends=[data_table lattice plyr spatstat spatstat_explore spatstat_geom spatstat_model]; }; pps = derive2 { name="pps"; version="1.0"; sha256="0k06rkzdx07qcndqym44q6xyawdd253i3kbyqlmlavadsizp657g"; depends=[]; }; ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; ppseq = derive2 { name="ppseq"; version="0.2.0"; sha256="0ir5jm3cgpgcngrq334f2s66lsvhd0vxsiz5glj371slc8jxkwj6"; depends=[dplyr furrr ggplot2 patchwork plotly purrr tibble tidyr]; }; ppsr = derive2 { name="ppsr"; version="0.0.2"; sha256="1dk62b08sxp87kll8wjfby3iq9l3akiprarh8agjdv6s43c9h2sg"; depends=[ggplot2 gridExtra parsnip rpart withr]; }; pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; - pqrfe = derive2 { name="pqrfe"; version="1.0"; sha256="18jyvaxixi51x3ibw8p6bm9j3sawkkk8ddhzw5nygii6x8prkmni"; depends=[MASS Rcpp RcppArmadillo]; }; + pqrfe = derive2 { name="pqrfe"; version="1.1"; sha256="0apsrlgricjmv202yg1h3iz2715nmf05wcvyznnha0nil7cqg0qi"; depends=[MASS Rcpp RcppArmadillo]; }; prWarp = derive2 { name="prWarp"; version="1.0.0"; sha256="1rx9yby7xwa2bgqa6a1zllan6qfchgfrg2waadmwfmjhcp8qb1mj"; depends=[Morpho]; }; prabclus = derive2 { name="prabclus"; version="2.3-2"; sha256="0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"; depends=[MASS mclust]; }; pracma = derive2 { name="pracma"; version="2.4.2"; sha256="05lwx2yx7f45cr5amzbjv3b2p6ibspjxl0aglq2dga6rvxzk6l0x"; depends=[]; }; @@ -14329,12 +14416,12 @@ in with self; { precrec = derive2 { name="precrec"; version="0.12.9"; sha256="1dfz2rqx2ww2l5r40ahg0qdj3rjrwiwh427mw7j5ynhpcj21j2qm"; depends=[assertthat data_table ggplot2 gridExtra Rcpp withr]; }; predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; predfairness = derive2 { name="predfairness"; version="0.1.0"; sha256="0b9d6a2rk6vw4y5hnh721gmirnm419yynbfg7arjb96558l282kd"; depends=[]; }; - predhy = derive2 { name="predhy"; version="1.2.0"; sha256="0iwlv9j0xpsl2xkvy7yb1irjg67d8xq13bzgjj8i4rqqhv12ap57"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; + predhy = derive2 { name="predhy"; version="1.2.1"; sha256="1m0c35r3h63vdimixskqviyqfblj8cxaf5b1085wb72fasanak5n"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; predict3d = derive2 { name="predict3d"; version="0.1.3.3"; sha256="1kb3jacpgzln1ddnkfzhvfpzzf9wig60lppca6iy0fvq5cm8ddr4"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr moonBook plyr prediction purrr reshape2 rgl rlang stringr TH_data tidyr]; }; predictMe = derive2 { name="predictMe"; version="0.1"; sha256="0n4sv9ahyvly17grlilybb7vwq9pzyn6mvhcn8z9cyswqa7svs49"; depends=[ggplot2 Rdpack reshape2]; }; prediction = derive2 { name="prediction"; version="0.3.14"; sha256="0awlq5lxfia6m2b91w73rksp93rbwv5gwqb36wbji4rgq41rzbrx"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; - predictmeans = derive2 { name="predictmeans"; version="1.0.6"; sha256="1mg37vd5nlfvv3mx6hrdmxj0aavm9wy1j70117hp4sasvlvsccdi"; depends=[ggplot2 lme4 lmeInfo Matrix nlme pbkrtest plyr]; }; + predictmeans = derive2 { name="predictmeans"; version="1.0.8"; sha256="1w5kszqqqg4xx1zq6y4a93b00aa67riqsb1dq21xqpscvyiz5nv9"; depends=[car ggplot2 HRW lme4 lmeInfo lmerTest lmeSplines MASS Matrix nlme numDeriv pbkrtest plotly plyr splines2]; }; predictoR = derive2 { name="predictoR"; version="2.0.7"; sha256="01ixa8ahfdx2dnxsjzkrv09wzpis641d846b4pbhlykgdwz8mhqc"; depends=[colourpicker config DT echarts4r glmnet golem htmltools rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; predictrace = derive2 { name="predictrace"; version="2.0.0"; sha256="1bk1l9gai4hyck72h81znsm1dzqwm5wddbz0bm9g5igs6zkar2ka"; depends=[dplyr]; }; predieval = derive2 { name="predieval"; version="0.1.1"; sha256="096zfb94iixza0lfzr4p21gkcs9hl7h0d5jhbzdi3hhyz80zymrj"; depends=[ggplot2 Hmisc MASS Matching]; }; @@ -14367,7 +14454,7 @@ in with self; { prettyglm = derive2 { name="prettyglm"; version="0.1.0"; sha256="1qxfiynry2fhmdrqkn7hf2llx18gdi8an3crkx0s116yp3dlv5xl"; depends=[broom car dplyr forcats kableExtra knitr plotly stringr tibble tidycat tidyr tidyselect vip]; }; prettymapr = derive2 { name="prettymapr"; version="0.2.4"; sha256="1fg2j6qx828qrg46clrvln2004nlk22yx7wvhr8vig66nc1lm7bd"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.1.1"; sha256="1ibmzgknw5896q2i6r59jz2izblxwgb29ivvjzx50pkd1jl9l6cs"; depends=[]; }; - prevR = derive2 { name="prevR"; version="4.0.0"; sha256="11biwj4qhynsqxgibgcgiprk5bs9ym9sja14lj6m8s43lyi6jyjb"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth maptools rgdal sp]; }; + prevR = derive2 { name="prevR"; version="4.0.1"; sha256="0r70ns7qg72bva712pqw3djp0lzz8bpm00d9s3q9qm30lhgcl124"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.1"; sha256="0llxcz7bg62l6qq4xaf2xwmc2k0y2l3zw5nb6bq0a9qnp3anj8ah"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; previsionio = derive2 { name="previsionio"; version="11.7.0"; sha256="08hrklr3ngphdhp50lkz6ls9nn1bzdvs6xj583spsw4vm7j44yfr"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; @@ -14393,6 +14480,7 @@ in with self; { prism = derive2 { name="prism"; version="0.2.0"; sha256="0gl6qmpgfdxn90aw10z4xj4ijcwj9mr0s9ahm28niinr9y89gzxk"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; prismadiagramR = derive2 { name="prismadiagramR"; version="1.0.0"; sha256="13x3y4rv9b2d013jd6853zkq8rbxq88wlffmdnjs1rca0fnfrn4f"; depends=[DiagrammeR dplyr]; }; prismatic = derive2 { name="prismatic"; version="1.1.1"; sha256="013i0mq4n8s2zbzvfrz1vjcn2a6l98bamslkcv1a3cn70gpphja9"; depends=[farver]; }; + prismjs = derive2 { name="prismjs"; version="1.1.0"; sha256="0siga7l60d0axlnjwbl4smw28rggyxrjwzv8ypw9bhb6x1xnn8in"; depends=[V8 xml2]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.2"; sha256="06550fnnffpcnv4q2nicrm7p573313lvnj6hkdrf7979ygrsmmfi"; depends=[dplyr httr magrittr passport rnaturalearth rnaturalearthdata rvest sf stringr tibble tidyr xml2]; }; prithulib = derive2 { name="prithulib"; version="1.0.2"; sha256="12ybksrvxzc5gjz8m38cs35b7r3kd8m0zqm2c67pqw38vq82sjxm"; depends=[]; }; prnsamplr = derive2 { name="prnsamplr"; version="0.2.1"; sha256="0q810rldj8li5pw5pka00rvkwwi2y7r8akfpqfg7c6mnyqlzlx67"; depends=[]; }; @@ -14420,23 +14508,23 @@ in with self; { profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="0.9.3"; sha256="0p83gvm7xhnwfmrn2fr31rz84sllws92rpmhjvxfcc6ylsp0hj0n"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; + profoc = derive2 { name="profoc"; version="0.9.4"; sha256="05dzsxf6kbx3jkw1f574brjlm1j4h1r72w8zgb2w182756qzbk3c"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; progress = derive2 { name="progress"; version="1.2.2"; sha256="0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l"; depends=[crayon hms prettyunits R6]; }; progressr = derive2 { name="progressr"; version="0.11.0"; sha256="1nbc6vvsyqa1gvh1a1m4prnvng88wsa0r35i9fiwq84a6j18qrnq"; depends=[digest]; }; - proj4 = derive2 { name="proj4"; version="1.0-11"; sha256="07fil52jswbg2h807cd82m2wlm5j2fb891ifri9ms037099qdwf5"; depends=[]; }; + proj4 = derive2 { name="proj4"; version="1.0-12"; sha256="1y3n6zjc4s78pagq5f2x9sdfjg5x5nwnhq67jd06fndlsma8mssa"; depends=[]; }; projections = derive2 { name="projections"; version="0.5.4"; sha256="1c7fm2f3fx0905afw3nrbv6vv0a0awpml1rl2kaxnijjgqcxa6dg"; depends=[ggplot2 incidence]; }; projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; - projpred = derive2 { name="projpred"; version="2.2.1"; sha256="1bbjrjaj6zzb1ph69x16i40fj2j6cg8vzmmw2rchsn0ygphaq9b8"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; + projpred = derive2 { name="projpred"; version="2.2.2"; sha256="0fycjmaqbcr3vp5708003flvi9ny4z04acgbcfly1ird0kcw9s3v"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr MASS mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; prolific_api = derive2 { name="prolific.api"; version="0.5"; sha256="0lnxkap6x4x5wvayfx1lm4h646wb0wsffn7xysrcysfdsaxa817d"; depends=[data_table jsonlite]; }; prome = derive2 { name="prome"; version="1.5.6.70"; sha256="0hhrrw06jd3qsq9ch8k5cv4p510kp2xkyd8dh6l7zw056cnjmac0"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; promises = derive2 { name="promises"; version="1.2.0.1"; sha256="1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"; depends=[later magrittr R6 Rcpp rlang]; }; - promor = derive2 { name="promor"; version="0.1.0"; sha256="1p61z7rfyxykxxzb97byiw4pjgxiqw4yam4yx2ggn2rp0vlkac6y"; depends=[caret ggplot2 ggrepel gridExtra kernlab limma missForest pcaMethods pROC reshape2 statmod VIM viridis xgboost]; }; + promor = derive2 { name="promor"; version="0.1.1"; sha256="1wn87cijc04zycfvpvpjd6d816r3bpicw9wfv38nswvrhpdds9k2"; depends=[caret ggplot2 ggrepel gridExtra kernlab limma missForest pcaMethods pROC reshape2 statmod VIM viridis xgboost]; }; promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; promotionImpact = derive2 { name="promotionImpact"; version="0.1.5"; sha256="18iq2r5zirddlfx20alm6qnxf9qv3ii3c9bcm789q0q18d2hyj2q"; depends=[crayon dplyr ggplot2 ggpubr KernSmooth lmtest prophet Rcpp reshape2 scales stringr strucchange]; }; prompt = derive2 { name="prompt"; version="1.0.1"; sha256="19l2vrm7qcdrf2mliniazf3mc6sz3g9v5sysf9nd01p5harqrk8k"; depends=[cli]; }; @@ -14447,7 +14535,6 @@ in with self; { propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; - propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.2.6"; sha256="1p53hcgcs2p09zhc2n7byjzrgvcgz6w7q00mlsn4kmnz7l4p7rrm"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.7.3"; sha256="0f6jwzcqi0w37hvg3i5dlk0c3anpkqh54ibf94vaf17r8sykr4nw"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; @@ -14470,7 +14557,7 @@ in with self; { provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; provViz = derive2 { name="provViz"; version="1.0.9"; sha256="0hwd9x02xcldrmmnpknsycqlb78ngdsphs7n141rcxsv167gbmcq"; depends=[]; }; provenance = derive2 { name="provenance"; version="4.0"; sha256="0ds798jjb7hcc473ca51rylnl5zpcbv02z88rvj9zs8vj22kdy6j"; depends=[IsoplotR MASS]; }; - proverbs = derive2 { name="proverbs"; version="0.1.0"; sha256="1i3aqlk4xb6zrjb7izyz7m9ys950cc6msvac8ixx74a7s57j99p1"; depends=[cli crayon httr lubridate magrittr purrr]; }; + proverbs = derive2 { name="proverbs"; version="0.2.0"; sha256="1kfc8vghrzszgvjx5pq221cw20cn990h5s7l1di5m61wx29siakc"; depends=[cli crayon httr lubridate magrittr purrr]; }; proxirr = derive2 { name="proxirr"; version="0.2"; sha256="0ffnzmd9zy43vzp0mc0ncjwfj5d7p2gzwk8gcwhk1f9yvgiw4wc1"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-27"; sha256="0gsng2aggnljl4z82la9hpnd26hngzhj8fizx4wx22npqjj93694"; depends=[]; }; proxyC = derive2 { name="proxyC"; version="0.3.3"; sha256="00p3604ny6qax5rr1865c27hfp90v2vga0xcrp3bb81xcfadl99y"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; @@ -14491,7 +14578,7 @@ in with self; { pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; - psfmi = derive2 { name="psfmi"; version="1.0.0"; sha256="19hm8qswvrg1a1nsby3nfd6avgxl84q77xi2y2frnlh7j92wm63x"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice miceadds mitml mitools norm pROC purrr ResourceSelection rms rsample stringr survival tibble tidyr]; }; + psfmi = derive2 { name="psfmi"; version="1.1.0"; sha256="1f5781j676cf0wvybyxh4rylzawfh949gndqfpcdl3kql1bd2215"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice mitml mitools norm pROC purrr ResourceSelection rms rsample stringr survival tibble tidyr]; }; psgp = derive2 { name="psgp"; version="0.3-19"; sha256="0yaf69zk4zkpgx5zyksdxb2g4az0ci8v6r23phzcis9fd21y70ds"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; psica = derive2 { name="psica"; version="1.0.2"; sha256="1cnrd1p8ikv0hl97jwypw8np1ypa0d8k2mizwd1clkv7inbb264g"; depends=[BayesTree gridBase party partykit randomForest Rdpack rpart]; }; psidR = derive2 { name="psidR"; version="2.1"; sha256="06rsi6ai58yggf73hjaidjhlgc09jjk76a4drvvgfs3v0qm296mm"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; @@ -14499,7 +14586,7 @@ in with self; { pso = derive2 { name="pso"; version="1.0.4"; sha256="0dq02pv86iwxpvd8wfbryxfsxqrrw4991iim60nyh8mn02gflkmi"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; psp = derive2 { name="psp"; version="0.1"; sha256="0ls8nqfddl9yqsz6binjf5smg3vbs5r65dqv92zn6hmb51akf7q5"; depends=[]; }; - pspatreg = derive2 { name="pspatreg"; version="1.0.4"; sha256="1rnlcxb95yzcihjsah31g94fk57gmw5cyjf83mi67mrx037zzxsr"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; + pspatreg = derive2 { name="pspatreg"; version="1.0.6"; sha256="1ml3vyz76lb2qgsqm5223pmx686l79hwplwj63fr7pm3vikdcsnm"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; pspearman = derive2 { name="pspearman"; version="0.3-1"; sha256="09l3knwaj4xs9dfz1xcj4mbynd4w1vxcgmzfqxz97czzbf7ingwh"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-19"; sha256="0h7y9l64knx291ms5mlc65dl3ljzgmrfzdqk1rd7iy8x7wcvymds"; depends=[]; }; pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; @@ -14526,7 +14613,7 @@ in with self; { psymetadata = derive2 { name="psymetadata"; version="1.0.1"; sha256="1m1b1fhiv31hjc7iy20c065w25mgzmsbp0vlh2vlzrlqmfw0qpwv"; depends=[Rdpack]; }; psyntur = derive2 { name="psyntur"; version="0.1.0"; sha256="0dh7vdj3ynsxibcf0wmh5h4yknijg78azjzlma25glihpgd2nbbw"; depends=[dplyr effsize ez fastDummies formula_tools GGally ggplot2 ggthemes magrittr plyr psych purrr rlang tidyr tidyselect]; }; psyphy = derive2 { name="psyphy"; version="0.2-3"; sha256="1cf134l5j7ggclr08jb5vrj4jv4gq9s1b3njj0ic4263xg8wvv6n"; depends=[]; }; - psyverse = derive2 { name="psyverse"; version="0.1.0"; sha256="0q402z884fwnd812bs44xqbsank89risli13v3njhjc337lj29wx"; depends=[yaml yum]; }; + psyverse = derive2 { name="psyverse"; version="0.2.4"; sha256="10v1fwi5rcmsr5d4lylp7j23vc06mvkr3g4shvhw84yhba78g201"; depends=[yaml yum]; }; ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptf = derive2 { name="ptf"; version="0.0.1"; sha256="1s9nzn823z2capil83vcfs7frg8f6bpygx8aw1zz4sacnhvryr52"; depends=[Matrix plyr rARPACK Rcpp RcppArmadillo]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; @@ -14547,13 +14634,12 @@ in with self; { pubtatordb = derive2 { name="pubtatordb"; version="0.1.4"; sha256="0i5azbf75bwxxzpsr5fc2hh22pbwix00hz9dcdpn5jgp2957f7wx"; depends=[assertthat DBI dplyr R_utils readr RSQLite]; }; pullword = derive2 { name="pullword"; version="0.3"; sha256="125d091ba9h8h61y0m1bnflklmz898sp9w6ibca50vwz3d2qy5rz"; depends=[RCurl]; }; puls = derive2 { name="puls"; version="0.1.2"; sha256="0cdgcm4fvakk2mdjmlsnin3d0bf56wrm23p9f4bhh5j1ib68lsh5"; depends=[cluster dplyr fda fda_usc ggplot2 monoClust purrr rlang tibble tidyr]; }; - pulsar = derive2 { name="pulsar"; version="0.3.8"; sha256="0lrhz22s4622pcf9qz040sacg2myg6l3qym695v8f0a0zvabnix8"; depends=[Matrix]; }; pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; puniform = derive2 { name="puniform"; version="0.2.5"; sha256="1zw8qbqnyhyvzrw6izrqgnmbawcqg2jdhcb8lxs1rd8y7cn4v4wj"; depends=[ADGofTest metafor Rcpp RcppArmadillo]; }; pureseqtmr = derive2 { name="pureseqtmr"; version="1.2"; sha256="1c2pcci3s949hi8hh0h03mr3m6qw3kvihfglwavx578kjm2qw0xz"; depends=[ggplot2 plyr rappdirs stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; - purgeR = derive2 { name="purgeR"; version="1.5"; sha256="1r93jy5m9x9qgbnnh1a342479gv7f4xxz8w7g0idqd83pzsfasn0"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; + purgeR = derive2 { name="purgeR"; version="1.7"; sha256="0jcvfrgm7b85xf1lqjnidxrp0dmnqk8pjg2sj581jmkimrpf6cad"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; purrr = derive2 { name="purrr"; version="0.3.5"; sha256="1vzwajjw9h6jg5l82j7nkf3iraqmzwzh40s7q6wkq14awzbnqf52"; depends=[magrittr rlang]; }; purrrlyr = derive2 { name="purrrlyr"; version="0.0.8"; sha256="0ql08dka07wi1cxjcn12pxj00j0cm112074l7byj9vmi3rlqynh8"; depends=[dplyr magrittr purrr Rcpp]; }; @@ -14574,12 +14660,13 @@ in with self; { pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; pwrFDR = derive2 { name="pwrFDR"; version="2.8.9"; sha256="16qlxwhljhf878a7jif2kjj7hvga01bgr8zb6bh555yacxxh4yiz"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; + pwrss = derive2 { name="pwrss"; version="0.1.0"; sha256="16dyfi1qn50grs7dad15qqqrq5cxzkvfxy1pzr27cnp5rxyp0g5m"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt10 = derive2 { name="pwt10"; version="10.0-0"; sha256="0zzdd7z9i2dc2br4njfwz7147c907pf25aihh2i3lldkqzcbxkr7"; depends=[]; }; pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; pwt9 = derive2 { name="pwt9"; version="9.1-0"; sha256="0m2df89lali9945avcv4gdjpxch9in7vdd042nx0q8nv0alb4ijd"; depends=[]; }; - pxR = derive2 { name="pxR"; version="0.42.4"; sha256="1r0ffr5wxf67i1jh67v06vcmifw4hhhasd4aivic94bkvq4sqmn5"; depends=[plyr reshape2 RJSONIO stringr]; }; - pxweb = derive2 { name="pxweb"; version="0.16.1"; sha256="0yjq8967c7b4qp2gw7r8mwyvh8jggqff4hf0bkvi3mix3claz3zj"; depends=[checkmate httr jsonlite]; }; + pxR = derive2 { name="pxR"; version="0.42.7"; sha256="05i1cg35hq0z37xnh2qfcp8mnrphadrg7av5d0mcgi9nx6c1w80j"; depends=[plyr reshape2 RJSONIO stringr]; }; + pxweb = derive2 { name="pxweb"; version="0.16.2"; sha256="08lwi9adf5wavpc2cbqgyyf3cygih79wkrzf2naydnlf8xn3jcm4"; depends=[checkmate httr jsonlite]; }; pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; pyinit = derive2 { name="pyinit"; version="1.1.3"; sha256="0cbwip549d17ysbk4lrvn6a25vfjjnimjsd5myvnbvg8c9nq5ryn"; depends=[robustbase]; }; pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; @@ -14597,7 +14684,7 @@ in with self; { qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; }; qbld = derive2 { name="qbld"; version="1.0.3"; sha256="0zz2n8f4cn03k80wakfgjhablxhbr8hxj5ydl4m7zlya4kdkl5md"; depends=[knitr mcmcse Rcpp RcppArmadillo RcppDist rmarkdown stableGR]; }; qboxplot = derive2 { name="qboxplot"; version="0.2"; sha256="07f05n7zxgwyxg2r5fz691ra64m218w9v874xfzjx6671c40y1q2"; depends=[]; }; - qbr = derive2 { name="qbr"; version="1.1.0"; sha256="1n8arim3gmi2f6n75aqc2lzzvh6i87dv1wgs8c4jphd71fzqwqn4"; depends=[dplyr httr jsonlite magrittr purrr stringr tibble]; }; + qbr = derive2 { name="qbr"; version="1.2.0"; sha256="16nvf4qna4vbn2jcadl0klddgpgviqn8v0mv3mmc8namrvighxww"; depends=[dplyr httr jsonlite magrittr purrr stringr tibble tidyr]; }; qcQpcr = derive2 { name="qcQpcr"; version="1.5"; sha256="1298zla8z5w9z4idc07v3ca9rc1afx853y7iz3jmqnqnv8mr0s48"; depends=[ggplot2]; }; qcapower = derive2 { name="qcapower"; version="0.1.0"; sha256="14vszidjvyi8namwv5k0hpgdw1dpns5ilvxfwa920ivdg35709ki"; depends=[devtools ggforce ggplot2]; }; qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; @@ -14613,10 +14700,10 @@ in with self; { qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; qgam = derive2 { name="qgam"; version="1.3.4"; sha256="1jyamamdffaks89rspyhmg18b4iik0nb1j0vgqzvfnm890514cvn"; depends=[doParallel mgcv plyr shiny]; }; - qgcomp = derive2 { name="qgcomp"; version="2.9.0"; sha256="12jmx1r3dnifpp2kvzx2kkz7f6xqi4jg51bbhi29z5dj4dbjn8c2"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; + qgcomp = derive2 { name="qgcomp"; version="2.10.1"; sha256="0cdrb794j9wkfs80r98jbi21g21l3fm754cy364a00zzqd1f5jq3"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; qgcompint = derive2 { name="qgcompint"; version="0.7.0"; sha256="0v2b7rr6m5mx3wyclbryxlcdly1a2vj8z0ywsyq4vvj66g2aa0yk"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.1.1"; sha256="11ijkr67d2b2avd0slw6cfsdhq3v10xyc36b01fj1s1whpm8vrvw"; depends=[data_table MASS MCMCpack Rcpp RcppArmadillo statmod]; }; - qgraph = derive2 { name="qgraph"; version="1.9.2"; sha256="0r225b7rnsv6wz41ij0msmqr1xy0iqxh9dbsvjixbi1hvgv91wds"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; + qgraph = derive2 { name="qgraph"; version="1.9.3"; sha256="14azjxlvb02wlbskbsv5x3a6gpfb8hfyijfpbay6fimnsaqnmbj6"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; @@ -14638,7 +14725,7 @@ in with self; { qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qpdf = derive2 { name="qpdf"; version="1.3.0"; sha256="0x2n9b4avnm0p1cz6i90a3p6qjpwr68g4v0xa8d1rr3gbgqfraf8"; depends=[askpass curl Rcpp]; }; qpmadr = derive2 { name="qpmadr"; version="1.1.0-0"; sha256="0krv3zhr42z2mkkbn2bkglzfxbf06dmd9vnnc3rcyhm1r85n4fbq"; depends=[checkmate Rcpp RcppEigen]; }; - qqboxplot = derive2 { name="qqboxplot"; version="0.2.0"; sha256="0v83kjkq674ql55d9dfyw4bgybbqyvqivphn925a7wl9zqi1b3lh"; depends=[ggplot2]; }; + qqboxplot = derive2 { name="qqboxplot"; version="0.3.0"; sha256="1rsipw7cn2gqpqpa0ysj99ms5jpnbynjs4gkkmbr2w0c2466fhgx"; depends=[ggplot2]; }; qqconf = derive2 { name="qqconf"; version="1.3.0"; sha256="11sh0q5bwmqdygqd1gspx7xc5mysj18whz11afnz6s1m820snhhw"; depends=[MASS Rcpp robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.8"; sha256="1a6qp5wv9bvwjchfw8x4jh48hkynlnfr21a8vqgnswldvwbq7njq"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.5"; sha256="1ija4ik3bc404yjm5pw4y32krs1gxn6jd05pqmc0ajawydvr4w1r"; depends=[dplyr ggplot2 MASS robustbase]; }; @@ -14651,7 +14738,7 @@ in with self; { qrandom = derive2 { name="qrandom"; version="1.2.6"; sha256="00s2c3f9ji27drfyz674bszq1a7xxx8mx0m9g5vrzk9hbm1kcsfj"; depends=[curl jsonlite Rmpfr]; }; qrcm = derive2 { name="qrcm"; version="3.0"; sha256="0y1na936vk5qsir5plzjrbv39jpnq01qplza32z31x6y28is2fz9"; depends=[pch survival]; }; qrcmNP = derive2 { name="qrcmNP"; version="0.2.0"; sha256="0hxg9w4k4k14fan6hb476wnnnpf4y6xywc2vbjka7cmpl1ydw1p4"; depends=[qrcm survival]; }; - qrcode = derive2 { name="qrcode"; version="0.1.4"; sha256="1ajn7lmyaxyk1dgmhz5y8cl61g23g0cjva68ac604ffa14kfv76q"; depends=[assertthat R_utils stringr]; }; + qrcode = derive2 { name="qrcode"; version="0.2.0"; sha256="0472vfk3nlc0d99pc21909g554r9x9b8zhnlf9b995qz6jlmif2x"; depends=[assertthat knitr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; qris = derive2 { name="qris"; version="1.0.0"; sha256="0rdfpxip37wxim9ini4vgjjpk5b9jqdlaygqkbid2jgjzzya98h0"; depends=[ggplot2 nleqslv quantreg Rcpp RcppArmadillo stringr survival]; }; qrjoint = derive2 { name="qrjoint"; version="2.0-6"; sha256="0vj2f3zjjvp9715jh1fapf2y9vna1vclmd2mg6i8dzf8iw3g2jqf"; depends=[coda kernlab Matrix quantreg]; }; @@ -14667,8 +14754,8 @@ in with self; { qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; qsub = derive2 { name="qsub"; version="1.1.3"; sha256="0ygys183pj420jr9bz13x009qis3qr1aqxgw3l2d4xx3xv90iy3g"; depends=[dplyr glue pbapply processx purrr random readr ssh stringr tidyr]; }; qte = derive2 { name="qte"; version="1.3.1"; sha256="1hz3rwsi3w2b1xjigf5s3866djcxdkjz7jwcz0rin22v5h6sql80"; depends=[BMisc data_table formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; - qtl = derive2 { name="qtl"; version="1.52"; sha256="0q49g3ar1451whsl6ig7kz4mg8s9zxlcvgkj4ivyw4995wbwc2ij"; depends=[]; }; - qtl2 = derive2 { name="qtl2"; version="0.28"; sha256="0ppc6dzlq77mppxc6bczai9gi40jrbxd1466y2cn2s8a4ah1jg9y"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; + qtl = derive2 { name="qtl"; version="1.54"; sha256="1rzkxkmcgd6drxbgqp6w6jab5bs7vla2x2ndv3l4nlbcwzi41jw0"; depends=[]; }; + qtl2 = derive2 { name="qtl2"; version="0.30"; sha256="0c9v5hwfmlchrdzdysvmi6dsxyclc15sqbp65l4x6zwpd0828h6c"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; qtl2convert = derive2 { name="qtl2convert"; version="0.28"; sha256="06703m9mkpc77agkmikr9bhr4ag1z161k8pq8l1i562mkd0qlgs8"; depends=[qtl qtl2 Rcpp]; }; qtl2fst = derive2 { name="qtl2fst"; version="0.26"; sha256="0wpqpmj752pwjgghv7b30r69nc950h5fnsszsj142p7vws7ss8j9"; depends=[fst qtl2]; }; qtl2ggplot = derive2 { name="qtl2ggplot"; version="1.2.1"; sha256="0xr1hhhwifpjbnrp6cwjijic0qwp2yiar7qvb9dl9rb2ww4r369b"; depends=[assertthat dplyr ggplot2 ggrepel purrr qtl2 RColorBrewer Rcpp rlang stringr tidyr]; }; @@ -14687,26 +14774,28 @@ in with self; { quadmesh = derive2 { name="quadmesh"; version="0.5.5"; sha256="0af795r29976ir0ma48chmlm17001xg5wd29waz356cfhinzs2nk"; depends=[geometry gridBase palr png raster reproj scales sp]; }; quadprog = derive2 { name="quadprog"; version="1.5-8"; sha256="1ka9g8zak8sg4y2xbz93dfrldznlk9qpd4pq9z21cdcdn3b8s4i2"; depends=[]; }; quadprogXT = derive2 { name="quadprogXT"; version="0.0.5"; sha256="1yna2kx9pr58vyy6f4mwx4a6avjz84wwhcary88v1k0ihhv9swcz"; depends=[quadprog]; }; + quadraticSD = derive2 { name="quadraticSD"; version="0.1.0"; sha256="07v71anh0kz898x6j677bxx5lyarc4r0z1j0vx501ffi38icc1f0"; depends=[ggplot2 shiny]; }; quadrupen = derive2 { name="quadrupen"; version="0.2-9"; sha256="1rvnl2qn9cw1wvxaklxd41p9vnnvkcypkiryfi5fi9mwx6lzz8an"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; - quadtree = derive2 { name="quadtree"; version="0.1.9"; sha256="1qmy4ndqjy237b5d6k3viir5barnzgq4873qz7fdr6igmz7wnpvk"; depends=[raster Rcpp]; }; + quadtree = derive2 { name="quadtree"; version="0.1.10"; sha256="07n5fllbgd9n36hra373fbvwav43w6wil5iabncah4x6a49a5aha"; depends=[raster Rcpp]; }; qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-4"; sha256="0rkjzva2h158d5c631jmjjh7qjibbyisl0503san80rk9fgxl45b"; depends=[KernSmooth]; }; + qualitycontrol = derive2 { name="qualitycontrol"; version="0.1.0"; sha256="134dksflv43bixqa5lhcjgwqnahzpb2fnzl4dhc81wdb9pcqsg7v"; depends=[dplyr janitor openxlsx readxl stringr]; }; qualmap = derive2 { name="qualmap"; version="0.2.1"; sha256="0r8v7r2mh1dsvr9lvdcmddp5agbx5djg7850zf6ixlv8zak6cxz5"; depends=[dplyr glue leaflet purrr rlang sf]; }; qualpalr = derive2 { name="qualpalr"; version="0.4.3"; sha256="1hlssqj2129796d00gnip3ih5b705qasw0hkj25xfz7xak0vdbkm"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; - qualtRics = derive2 { name="qualtRics"; version="3.1.6"; sha256="163m0lmrcnxhx3f73fdd0bw6h5z4pqn8bbvxhk95pm2yn7pnbx9y"; depends=[assertthat dplyr glue httr jsonlite lifecycle lubridate purrr readr rlang sjlabelled stringr tibble tidyr]; }; + qualtRics = derive2 { name="qualtRics"; version="3.1.7"; sha256="0jfzghqj8qz5wz13j4v0h58l7mflmz7jm324j2agr109q2kl2vma"; depends=[cli dplyr glue httr jsonlite lifecycle lubridate purrr readr rlang sjlabelled stringr tibble tidyr]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; qualypsoss = derive2 { name="qualypsoss"; version="1.1.1"; sha256="1kcdmbj0wyycp7i4d3hb1addnl1c7ndkc6qnbnds0vcfk1dfxd8h"; depends=[doParallel foreach ggthemes MASS mvtnorm QUALYPSO]; }; quantCurves = derive2 { name="quantCurves"; version="1.0.0"; sha256="0z00agd4q157cjkc4gwyfw3kka043wcf5j7yzn8cqm281fqh1jny"; depends=[KernSmooth locpol np quantreg quantregGrowth]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; quantdr = derive2 { name="quantdr"; version="1.2.2"; sha256="0w6jdd6i4wxbk4fp44rmy32mwq9ng63zwamq8zpa1hlfbm5qh4s2"; depends=[dr KernSmooth mvtnorm quantreg]; }; - quanteda = derive2 { name="quanteda"; version="3.2.3"; sha256="1blk9nhydvqyyz0kzhph7nh7ahcjzflmgyr4sv8fx5bpmn4hwjzk"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; + quanteda = derive2 { name="quanteda"; version="3.2.4"; sha256="1yg3lgckh6fncmw037p4gaa2bab59yh6izqix1cgyysjg4jpcw62"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.5-1"; sha256="0i61bnk6hvrxqsrvmcpnak2c2drxiymxa28751s3yicm10m32i61"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.2"; sha256="1favm1cpka1gkpnq2qwqynay15q6f29b66wmm60wsd7dhsxcyjb6"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96"; sha256="1sp0xd31z63ahqhv1vp0vj6sy4cal0rh7pga1rmc6nnc6dszgfis"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; - quantities = derive2 { name="quantities"; version="0.1.6"; sha256="0kz95q8npiir8nadvfnpnnm9z5jg9mqk7b1fp6l0bj8asmjyw1l3"; depends=[errors Rcpp units]; }; + quantities = derive2 { name="quantities"; version="0.2.0"; sha256="0lp6s9kwgs7vw36nq2qq40n68wqzycr94q0hc4rlgc4gvwwm1sj6"; depends=[errors Rcpp units]; }; quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; quantmod = derive2 { name="quantmod"; version="0.4.20"; sha256="154fqhw46kc7r08zsj5fsg97hg93phsli3z14xwmz22xb50xymzp"; depends=[curl TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; @@ -14720,10 +14809,10 @@ in with self; { quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; quarto = derive2 { name="quarto"; version="1.2"; sha256="186q07r2hwldhk6fvhamaqq21g5c74jp967rqan13l4diakgb739"; depends=[jsonlite later processx rmarkdown rsconnect rstudioapi yaml]; }; queryparser = derive2 { name="queryparser"; version="0.3.1"; sha256="1pz66f3wxvvv42l5hib7hbpy14s8a13gn0n57vf6v5zdnz423kdr"; depends=[]; }; - queryup = derive2 { name="queryup"; version="1.0.0"; sha256="0a7y1vagv635cf40w208z17b8r3rlj4zidfcx8r3lnasbama7jpl"; depends=[jsonlite RCurl]; }; + queryup = derive2 { name="queryup"; version="1.0.1"; sha256="0yr73g4a5aghdxn3qc9y1al8n9m499x5vppzx9adrnhl0y0nigsf"; depends=[jsonlite RCurl]; }; quest = derive2 { name="quest"; version="0.1.0"; sha256="15al3j850v7i59zr9yybxjrb3lnpd14369rp5vnpzwxy80jpy7d9"; depends=[car plyr psych psychTools str2str]; }; questionr = derive2 { name="questionr"; version="0.7.7"; sha256="0mpxkmrv1v7fjj1hz1633n154s525p6skclybdhwmgldv45w896f"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny styler]; }; - queuecomputer = derive2 { name="queuecomputer"; version="1.1.0"; sha256="1lzc0hfva8dpz2q5g0abjc2avyqdffi8g1qi5h6mvx8qn5kx7bmw"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; + queuecomputer = derive2 { name="queuecomputer"; version="1.2.0"; sha256="0qlcj4rqfkp8qanzwi1p2s7r89x5w6aa8zwkcl7rqapbd4nwayhc"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.12"; sha256="0hw1ykm24cjpfwh7ac7fjf7mhc59mq8wy2g07aacpy5ibwi8bbsf"; depends=[]; }; quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; quickNmix = derive2 { name="quickNmix"; version="1.1.1"; sha256="01gnvnpfxry354qf772m187mfvjigqngjpi1k9y1g5nvlv7a4d62"; depends=[doParallel foreach optimParallel]; }; @@ -14742,6 +14831,7 @@ in with self; { quiltr = derive2 { name="quiltr"; version="0.1.0"; sha256="1my36y9kf52jm6w923qmffi3809d0xcc68sm5ngvfacszn665k23"; depends=[]; }; quincunx = derive2 { name="quincunx"; version="0.1.5"; sha256="1jny5q2sdndc26phqfr0vj3ry6pcdjcgdqqwqkhlf0x97vlicgb7"; depends=[concatenate dplyr glue httr lubridate magrittr memoise progress purrr rlang rvest stringr tibble tidyjson tidyr vroom writexl]; }; quint = derive2 { name="quint"; version="2.2.2"; sha256="1fmzdnikskq8f70h6bh5ig5s6d227bzd6q93n2c05ymj1m5s9ban"; depends=[Formula partykit rpart]; }; + quoradsR = derive2 { name="quoradsR"; version="0.1.0"; sha256="1gdb5zvi7hs2mpzv07w1mbm9w4ksidbz28mjb6w20bfpy6casfz5"; depends=[jsonlite]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; qut = derive2 { name="qut"; version="2.2"; sha256="1jsp3sv1631ar1sad8fy4l60ar2pbi20g50yz9mhs83427n3l63b"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="1.0.2"; sha256="0banzv78kb53ybfbh1hmgx7kxvpbbdxzg4dsn7vrwhmxs72srkch"; depends=[]; }; @@ -14753,9 +14843,9 @@ in with self; { r2d2 = derive2 { name="r2d2"; version="1.0.1"; sha256="1956p9xr9as8v4673d6fsdyas3racfzh6a5pafqz56r8ai1ssbyq"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dictionary = derive2 { name="r2dictionary"; version="0.1"; sha256="0assylz2ih96l4jily76hp524h5xbnc27ln8yjvk9c4q88yr8xfy"; depends=[rstudioapi stringr]; }; - r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.2.0"; sha256="1bd1byr7n488d0ig393vdg7mdg902hmhwaim6hcx31brqzz19kam"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; + r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.2.1"; sha256="0408r5vlq5kgd0b653sywi62rkfw1sg3m4via072c5bdr207bj8d"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; r2dii_data = derive2 { name="r2dii.data"; version="0.3.1"; sha256="00a1flpqak862yf0x98kap1jalz3485mwhps3ywi1i5b9g3g2x4q"; depends=[lifecycle]; }; - r2dii_match = derive2 { name="r2dii.match"; version="0.1.1"; sha256="030lvmi34fsbllwz0vhfxfmyar08x83hl7gkf6q6g5s54d1am1lr"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; + r2dii_match = derive2 { name="r2dii.match"; version="0.1.3"; sha256="19k6g7pa7jdsbpclkvppj3m08vji79jnijywzplwy01c84by5gf8"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; r2dii_plot = derive2 { name="r2dii.plot"; version="0.3.0"; sha256="0xfirb7xq199mxngjva535nqfdfl8ff26bmfdk141hg9fysfs00v"; depends=[dplyr forcats ggplot2 ggrepel glue lifecycle magrittr r2dii_data rlang scales stringr]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2mlm = derive2 { name="r2mlm"; version="0.3.2"; sha256="04j8q1j5r2z6vjji3lgw6c6mn3xip339zwqbli0limx9lklcdjr6"; depends=[dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; @@ -14766,6 +14856,7 @@ in with self; { r2resize = derive2 { name="r2resize"; version="1.3"; sha256="14zk3vhisb3fy2khx7w98zl4jzq2pnyh9sdpjc5rbr3yqpmj6mi2"; depends=[DT shiny]; }; r2rtf = derive2 { name="r2rtf"; version="0.3.5"; sha256="1dhmkv2qv1rqkmd53ca2r85178p05jm5l8m01inyz96vqjdk1h4z"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; + r2social = derive2 { name="r2social"; version="1.0"; sha256="1jmhq2qfh3wn47ysl8lairhj7zibiq0dw5nfx0ki1d3vi6f7bv5r"; depends=[htmltools shiny]; }; r2spss = derive2 { name="r2spss"; version="0.3.2"; sha256="1d0znbw0bmgl8k9xwz78lmidh8338n3vq4f9qyqmb87nvjmiilhl"; depends=[car ggplot2 scales]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-10"; sha256="1hv5wq6lxrv57pszxky4xiwhjhjlzxa4fh0flrrmrrk89dygkx9v"; depends=[Rcpp RcppArmadillo rmumps]; }; r2symbols = derive2 { name="r2symbols"; version="1.2"; sha256="1vwg0i42gb768j30vhr8hvlb32df19lbjf5kyya15z1a0x6b4sz8"; depends=[htmltools jsonlite]; }; @@ -14786,6 +14877,7 @@ in with self; { rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; rBDAT = derive2 { name="rBDAT"; version="0.10.0"; sha256="1vndnip3rpvlgmnmi91r23nyr59v6dmm8m5i2yxi7pim1l35323r"; depends=[]; }; rBMF = derive2 { name="rBMF"; version="1.1"; sha256="16yg1k7vv88q421nk1a70626c7c54bwnb3x7kiyxv2c0ha00f3g8"; depends=[Matrix Rcpp]; }; + rBahadur = derive2 { name="rBahadur"; version="0.9.1"; sha256="1wfhn4k32jnvw5gxvc8izwfgi8xbg9v3wr7m7w08hyp4n8k6fnfz"; depends=[]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.0"; sha256="0gwdzv4wl4n940ph23yhjh0s192k9visvivww5k1kmy2b1j88cva"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; rBiasCorrection = derive2 { name="rBiasCorrection"; version="0.3.4"; sha256="1ivxxw7jf1s95abjwc794mqklkvlgvgyyb6ii99x6mnga6flh11n"; depends=[data_table future future_apply ggplot2 magrittr nls2 polynom]; }; @@ -14808,7 +14900,7 @@ in with self; { rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; rFerns = derive2 { name="rFerns"; version="5.0.0"; sha256="1yw3np5iamnr7f3nrd507dkyz76nxmzdpinwxncv87yw30g6gnkq"; depends=[]; }; rForest = derive2 { name="rForest"; version="0.1.4"; sha256="0vk9sfnbzpjqh7mr3qwi5awlh8qc0h1i6qwbyv7qj72apy05s2d8"; depends=[alphashape3d geometry rgl sp]; }; - rGV = derive2 { name="rGV"; version="0.0.2"; sha256="079nrlyywzk3cgy6mkizyzd8z0w2a4ghjcp9jpv15zcznzdnaqzp"; depends=[chron]; }; + rGV = derive2 { name="rGV"; version="0.0.3"; sha256="0hqn1lh1bjjsdmj10drdflag5nrakh73b2m53iy4vhsr47gz07n9"; depends=[chron]; }; rGhanaCensus = derive2 { name="rGhanaCensus"; version="0.1.0"; sha256="1i8z2cfzk64yhvkia1khsmw666dflai1sj8bhd8n2d97a45nb230"; depends=[]; }; rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; rIP = derive2 { name="rIP"; version="1.2.0"; sha256="1f3gbd3ij047n0rh4a7yy6wdjz3b89rki7zaz4y9zgw6bad6ylkl"; depends=[amerika dplyr httr iptools jsonlite]; }; @@ -14818,7 +14910,6 @@ in with self; { rJava = derive2 { name="rJava"; version="1.0-6"; sha256="1ijqhvnb8ab38cp9pwdf7zq7xqqlm6x94gkrab2dd98p6d4x1472"; depends=[]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.1"; sha256="0zs7a75hgrj4ajbbxn0kmc2871rakyizhwdn7ryha8bgig4ld3cs"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; rKenyaForex = derive2 { name="rKenyaForex"; version="0.1.0"; sha256="1y5hdc1n8kan42vzg6kpfgz68s1bpd93pavcisxh03c76zkf9ap9"; depends=[]; }; - rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLFT = derive2 { name="rLFT"; version="1.0.1"; sha256="0d86z5ckhkavgr2xi9pk7pw8ss3whrssa7na43kj0pirax9cys4z"; depends=[Rcpp sf]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; @@ -14826,6 +14917,7 @@ in with self; { rLiDAR = derive2 { name="rLiDAR"; version="0.1.5"; sha256="0sw79zr7hdwprlwijlg6qmn7pmpcnhxfr7ycdz09058c0kd815h8"; depends=[bitops deldir geometry plyr raster rgeos rgl sp spatstat_geom]; }; rMEA = derive2 { name="rMEA"; version="1.2.2"; sha256="18manb926yd6a3b6im7g2vf1cbvvdkg15i6zl223npckhna2nbx0"; depends=[]; }; rMIDAS = derive2 { name="rMIDAS"; version="0.4.1"; sha256="0q40ksz09c8mv3kci35k561f92nz26vb5w4kh7xpkcmwig8bcqwx"; depends=[data_table mltools reticulate]; }; + rMOST = derive2 { name="rMOST"; version="0.0.2"; sha256="0dy0sls9sl4n1hsyw6rczcffl1p03nlxs1m1jhdk9a00wrwkzvky"; depends=[nloptr]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; rMVP = derive2 { name="rMVP"; version="1.0.6"; sha256="0c3bmn7k5hgw8mgplyhwf6dkgvrxd29yj829wy5j9z1p88gq6wrk"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; rMisbeta = derive2 { name="rMisbeta"; version="1.0"; sha256="1h4vilnndl0gnz9z0sgbywp4zy44718zpiqcqigbjbd4lymi0y61"; depends=[ROC]; }; @@ -14848,14 +14940,13 @@ in with self; { rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.5"; sha256="17jabv64rgaxs5kx579vjrhcw2k08c6ah6a11cswl8v9h0vjjz8i"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; - rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; }; rSPDE = derive2 { name="rSPDE"; version="1.2.0"; sha256="1qwmjzp7iz7rhaa4kslcm133m5rwxk381r2yqqqccf0r9cah7klf"; depends=[Matrix]; }; + rSRD = derive2 { name="rSRD"; version="0.1.5"; sha256="1kmivz5qlfqq300lcg8qjl79dhcbdmq9xxx18bn57yks7g7ksk8s"; depends=[dplyr ggplot2 ggrepel janitor Rcpp rlang stringr tibble]; }; rSpectral = derive2 { name="rSpectral"; version="1.0.0.9"; sha256="1r1ygvgp2z82nsqx3q9ax4zf0ylgwqlv13sgbqacaxn07b7yx1xv"; depends=[graph igraph Rcpp RcppArmadillo Rdpack]; }; rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; rTCRBCRr = derive2 { name="rTCRBCRr"; version="0.1.1"; sha256="0k4blxbnyzgfgcvn59zw8fnw6avhgbmbgkk6a1ycpz1jijy1sn2z"; depends=[magrittr readr tidyr tidyselect]; }; rTG = derive2 { name="rTG"; version="1.0.1"; sha256="1wsas7wvyzbiw31iv0qazjmnxj7al84y5kpvglf1f0dd444y4hc0"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; - rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; - rTRIPLEXCWFlux = derive2 { name="rTRIPLEXCWFlux"; version="0.1.0"; sha256="1fh4xnfg7b90gqc10g7dxffc9kan644684vmc5p4h27bs53b5b5p"; depends=[]; }; + rTRIPLEXCWFlux = derive2 { name="rTRIPLEXCWFlux"; version="0.2.0"; sha256="0gliwrbwynxm0ldnvpqs8yl6k63y54kr4ggx21zsvjbqbxs2q4v3"; depends=[]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-2"; sha256="0rba3dxy97r75mxfn8rxrk2081my79la2m5m9h5ms2z5px07llqd"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.4.8"; sha256="1ks4rwaish24sg5gc2jkfdqfq6h8gh9f3wdxk3dxjgpwjqwijz8f"; depends=[]; }; @@ -14926,8 +15017,8 @@ in with self; { randomizr = derive2 { name="randomizr"; version="0.22.0"; sha256="1grm0h3xkb0pdbbv0gd531g1kn6njp0gcy5fh153rrmajxgd8hhw"; depends=[]; }; randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; randtests = derive2 { name="randtests"; version="1.0.1"; sha256="1r1b76g9qlss75qqyh05wic4k08xixgx6lgs7gc49an71h0mi5a7"; depends=[]; }; - randtoolbox = derive2 { name="randtoolbox"; version="2.0.2"; sha256="0mvafd2gm1jpg19gdn6bw8668pqghi0xmcb56rl4fwamg8jg09xn"; depends=[rngWELL]; }; - rangeBuilder = derive2 { name="rangeBuilder"; version="1.6"; sha256="1r39f2i2g7lf959b39nk355jm6iyjcqcp8lk47s6qp7wnnqh9h9p"; depends=[alphahull cleangeo data_table pbapply raster Rcpp rgeos sp stringdist stringi]; }; + randtoolbox = derive2 { name="randtoolbox"; version="2.0.3"; sha256="0i23wj9nmsfy3x2yzlfadzrvil2yhcrxs6qxrykrqs15r9jwx3hm"; depends=[rngWELL]; }; + rangeBuilder = derive2 { name="rangeBuilder"; version="2.0"; sha256="10sp40jkqv04980dqqshk1ixsl789sk3sdf8ygwfp95a44rx20v4"; depends=[alphahull pbapply Rcpp rnaturalearth sf stringi terra units]; }; rangeMapper = derive2 { name="rangeMapper"; version="2.0.3"; sha256="1wasvd3k2c6crl2q27d9q88x21pv66b6h9x3msfdcw0k0h719dzc"; depends=[data_table DBI exactextractr future future_apply glue magrittr progressr raster RSQLite sf]; }; rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.4"; sha256="102z7ysbw0i1mbnwg0v3h0i094ksw91q84a53qyxndq4m6f557aj"; depends=[dplyr jsonlite MASS raster rgbif rgdal rgeos shiny sp spatstat spocc spThin]; }; rangemap = derive2 { name="rangemap"; version="0.1.18"; sha256="17ycliswmsrc1rvyxj2ik2rs7f061dvam6ck0pm6myj52m2xg781"; depends=[concaveman dplyr maps maptools raster rgdal rgeos rgl rnaturalearthdata scales sf sp spatial]; }; @@ -14940,11 +15031,11 @@ in with self; { rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; rankinPlot = derive2 { name="rankinPlot"; version="1.0.1"; sha256="0vn04ash9d7n3y8g1yrgmsj357qfskfh31l4fj5h745s1rqfm5i8"; depends=[ggplot2 scales]; }; rankrate = derive2 { name="rankrate"; version="1.0.0"; sha256="0i4sf9hhyxry07bc31c1ww7hqig1r2vgkds34q5csq7g3mic3shf"; depends=[gtools lpSolve nloptr]; }; - ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; }; rapbase = derive2 { name="rapbase"; version="1.23.0"; sha256="0n378cdvhfsl638k03rw844pr9298sbk84yn8hixk6f5igihbg40"; depends=[base64enc bookdown DBI digest dplyr DT jsonlite kableExtra knitr magrittr readr rlang RMariaDB rmarkdown rpivotTable sendmailR shiny shinyalert sship yaml]; }; rapiclient = derive2 { name="rapiclient"; version="0.1.3"; sha256="1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"; depends=[httr jsonlite yaml]; }; rapidjsonr = derive2 { name="rapidjsonr"; version="1.2.0"; sha256="07zdirhbzmvq3cp4xn8ngk1lgxbbabzays315zxbs3sxrz6lzjb2"; depends=[]; }; rapidoc = derive2 { name="rapidoc"; version="8.4.3"; sha256="1i7f122iigbaah1c3g5vfmnypwilcgc1i3d0l3985s5fjj44dnhn"; depends=[jsonlite]; }; + rapidphylo = derive2 { name="rapidphylo"; version="0.1.0"; sha256="1mhfhvpm09r0jw6dvjszz139fw4m2fb3509xbw5dwpxnhjc2350n"; depends=[ape phangorn]; }; rapidraker = derive2 { name="rapidraker"; version="0.1.3"; sha256="1dhjsv22rdsv668d8dzdd6pm5xy549iiycv6isjmc5cwj3dp5fyz"; depends=[openNLPdata rJava slowraker]; }; rapidxmlr = derive2 { name="rapidxmlr"; version="0.1.0"; sha256="14pa08yp8xmbqk8wwinz1xsphx75xq6vg8zgzcxc5zgmcf0ja5if"; depends=[]; }; rappdirs = derive2 { name="rappdirs"; version="0.3.3"; sha256="1161i3jgjvzjv4p8qbz9r976fnggkcrw3mlj4yd1h2svnijrz5a9"; depends=[]; }; @@ -14958,13 +15049,14 @@ in with self; { rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rassta = derive2 { name="rassta"; version="1.0.5"; sha256="0yia0pwg29fd6hq0f96hdf6k70pj296805a4lgxn4qqwn3gw7006"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly rlang scales shiny stringdist stringi terra]; }; - raster = derive2 { name="raster"; version="3.6-3"; sha256="1in3n0hqzcdhibjl3y82nwn6m6wcv4k3l6s2jw57jn32qgvy01lz"; depends=[Rcpp sp terra]; }; + raster = derive2 { name="raster"; version="3.6-11"; sha256="1arvmhf3ijzh3aanw8n6mdnwk4h26axsxpszvr5g43l7g5vfmggf"; depends=[Rcpp sp terra]; }; rasterDT = derive2 { name="rasterDT"; version="0.3.1"; sha256="1dl083jm4x0shl7lq4in2alksgi63hp1p7j2cnsvkmwjaxygzm9v"; depends=[data_table fasterize raster sf]; }; rasterImage = derive2 { name="rasterImage"; version="0.4.0"; sha256="191m5k1rbbwziznmxbsq4g55afkw8gb5011i70f3wx3dscr3phxz"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.2"; sha256="0az96k8l7yjya5mg5ckda43qy9h8iad5gyyxi1ycld3kzcwiinhj"; depends=[raster]; }; - rasterVis = derive2 { name="rasterVis"; version="0.51.2"; sha256="0kgg6cm7xjqya2d46w0i1i1wjpkb8f99lyqy7rgwa7l9xmwzj5n1"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; + rasterList = derive2 { name="rasterList"; version="0.5.14"; sha256="1c2l3p1353nfpib5xcsyyipgcvidj1kl8q9p076hs7j7341xgrfg"; depends=[raster]; }; + rasterVis = derive2 { name="rasterVis"; version="0.51.4"; sha256="1z4vwjmx8n01jc2ypqs1pmx70rc3pjaz3ahk8j8zcif40v0qgy6i"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; rasterbc = derive2 { name="rasterbc"; version="1.0.1"; sha256="17knrhvy2qkdz5bvhnllfkv8w4cm5gjjninwh66pk1xfrqkd4skg"; depends=[sf terra]; }; - rasterdiv = derive2 { name="rasterdiv"; version="0.2-5.2"; sha256="18ywr1xmhyybg1ip5vi9hz9ms5zxfm49z5qprc3wwvxvssva5zg3"; depends=[foreach progress proxy raster svMisc terra]; }; + rasterdiv = derive2 { name="rasterdiv"; version="0.3.1"; sha256="01fxi3i1p280n38aaffnnj68w2ri8s5qrapvc44viqv3133n837l"; depends=[foreach progress proxy raster svMisc terra]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; rasterpic = derive2 { name="rasterpic"; version="0.2.1"; sha256="00fjn9lyx81jncxml5pw0xfbmsi2kh3mvdrvz73jhqha52zxhpl6"; depends=[png sf terra]; }; @@ -15004,8 +15096,8 @@ in with self; { rbgm = derive2 { name="rbgm"; version="0.1.0"; sha256="0jw7p6l0il0fz5rq7ra731xzj06aqqvm9s1r0hwa4rd74lkg198n"; depends=[dplyr geosphere raster reproj rlang sfheaders sp]; }; rbhl = derive2 { name="rbhl"; version="0.9.2"; sha256="0rs1mmah4yyy5dgz1lvzslm4dk53x0wpiy3742z3hwr8p4agnkqi"; depends=[crul jsonlite plyr tibble xml2]; }; rbi = derive2 { name="rbi"; version="0.10.4"; sha256="0p0cvdzhb81drk5b9fb9jcnw5c02i7qfy7vwyyhk2b1vm9rkw681"; depends=[data_table ncdf4 processx reshape2]; }; - rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.2"; sha256="1inbf3kpl4y46m7v36akrr24112y4sd3d8yqia16i32wxf53wql5"; depends=[data_table lubridate Matrix rbi reshape2]; }; - rbibutils = derive2 { name="rbibutils"; version="2.2.9"; sha256="11pzbqykmn7m9gp5jspfcj6vij865wqf9ry6m3jkihvfj7zhfb5j"; depends=[]; }; + rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.3"; sha256="0jlzfnw3r138inap6dnq0a7cbirs5q18ypxgcb3zfqq5zxkdx276"; depends=[data_table lubridate Matrix rbi reshape2]; }; + rbibutils = derive2 { name="rbibutils"; version="2.2.11"; sha256="10g3fv8ninihjldhvh00yrp260dczhz3q519000jm3wp5w47b945"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.1-0"; sha256="0lmkfr0s90hi06llsa0v4jbcx0jd1dx3qq9h6kb67ws0q6h9y028"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; rbioapi = derive2 { name="rbioapi"; version="0.7.7"; sha256="12lwm9x2z9bvnksp6qpqllz2mg45iia4cvv5pqr7rh7p9gwibqsm"; depends=[httr jsonlite]; }; @@ -15014,7 +15106,7 @@ in with self; { rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; - rbmi = derive2 { name="rbmi"; version="1.2.1"; sha256="1jxbjzf1acgpm8hg7y7rg2jsv94qv6wh4f51wwv3zw1rghfsfmn6"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + rbmi = derive2 { name="rbmi"; version="1.2.3"; sha256="1l8jnp24a01s0acv529bmxdbxzalh1i9i8h35ikkagvrhbwss8sb"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rbmn = derive2 { name="rbmn"; version="0.9-5"; sha256="087i0snzfk5ng944pvy3cqnbib270p0sdmmxk9lp4ab6hi0f7618"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; @@ -15028,7 +15120,7 @@ in with self; { rcage = derive2 { name="rcage"; version="1.2"; sha256="1xa9hdzl3dkrhzjp3bng9pxip9c0crr6zh6iq5916h78nm5k7bir"; depends=[ClustGeo ff fields ggplot2 gridExtra LaplacesDemon MASS Matrix pracma raster rgeos rlang sf sp]; }; rcaiman = derive2 { name="rcaiman"; version="1.0.8"; sha256="1p1lvkp2a8y0cal543c8qn8aphvr8zz09393nxnag81fd0a9vwy6"; depends=[colorspace filenamer lidR magrittr pracma Rdpack spatial terra testthat]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; - rcarbon = derive2 { name="rcarbon"; version="1.4.4"; sha256="0swc8mpmiycpmx4a8scsxbb509gih5s1ddhbgn6n46pqhszqs2lc"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + rcarbon = derive2 { name="rcarbon"; version="1.5.0"; sha256="1d41fi2arsj8v5ccijqzyz55safcjirax9068rsjvr01zpxq6ag8"; depends=[doSNOW foreach iterators knitr sf snow spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.8"; sha256="1kxy3nv9f3qk5azp8d6khd7skk9m4704mdimgzabrndrlb5ihyw8"; depends=[MASS plyr rlemon]; }; rcbayes = derive2 { name="rcbayes"; version="0.2.0"; sha256="1qwbpx9snqgaz7gshvyhq9ylsf59grjhx56f7cnq25h2f76km9cc"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; @@ -15039,8 +15131,9 @@ in with self; { rcdk = derive2 { name="rcdk"; version="3.7.0"; sha256="070xfs65xs0wjhm6ghhfb4sccjryaypyj07abdr9qb72s3567g18"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.8"; sha256="0j8r0aqvdmajglyc3zld1d2g2cggg6i3qms1ghalxxdgph555jzw"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="4.2.1.0"; sha256="0i4yda90kjfpi9jwqwgrg36qq5h1vm1sb6aq9b61ab80vw7w0nng"; depends=[]; }; + rcheology = derive2 { name="rcheology"; version="4.2.2.0"; sha256="09s6b702kla15bkvbjr9b0a0l9cs9z83f73alspid9k1i42fc765"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; + rciplot = derive2 { name="rciplot"; version="0.1.0"; sha256="1c8r8v5r4agwn26iacrkm2whrrr25y5kyi5x130w42vyxrxjj07c"; depends=[dplyr ggplot2 tibble]; }; rcites = derive2 { name="rcites"; version="1.2.0"; sha256="1lyahgpjskzqlmjnz14kkkrl30by1nzzi02wsf0rfskbdhmwc5in"; depends=[cli curl httr jsonlite]; }; rcitoid = derive2 { name="rcitoid"; version="0.1.0"; sha256="11iqdj1q983w28fh17rqvmhs41ks09b24p408nl7hz4iqg9c7lpi"; depends=[crul curl fauxpas jsonlite]; }; rclipboard = derive2 { name="rclipboard"; version="0.1.6"; sha256="0sb28shhfkpflik78h31736li80gjfzim62911iy3vk9b0szd0vy"; depends=[shiny]; }; @@ -15049,13 +15142,13 @@ in with self; { rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; rcompanion = derive2 { name="rcompanion"; version="2.4.18"; sha256="0fnfib2dcyyklk5npxchwawdmskcicy9zyg1dqw33vhxyc88lpwb"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; rcompendium = derive2 { name="rcompendium"; version="1.0"; sha256="1j6hxf6hdvi90qhlzra0jkgyn7a3q4skj594b7lxg5mfkzs7zr2j"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; - rconfig = derive2 { name="rconfig"; version="0.1.3"; sha256="075rq5bkzdbyxvrs23glhhyl7g69pp2f9h4dkwxkickk893glzy5"; depends=[jsonlite yaml]; }; + rconfig = derive2 { name="rconfig"; version="0.1.5"; sha256="1h7g2b87ff3ga97pc3mrhh3dzxx5pq97wyadqfz46j3h79lhzvkc"; depends=[jsonlite yaml]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.4.2"; sha256="1b41f636bkr0mr72klyad4fyx5zf129c9h1523rkfkyxrlf527yx"; depends=[dplyr forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster Rcpp rgdal sp]; }; - rcrossref = derive2 { name="rcrossref"; version="1.1.0"; sha256="1n33skb3mwcn9xfd49p8m72z3kqz8n6dj48d286xdpd0zlcahqbh"; depends=[crul dplyr DT jsonlite miniUI plyr R6 shiny stringr tibble xml2]; }; + rcrossref = derive2 { name="rcrossref"; version="1.2.0"; sha256="0hqvhqmfmbhvxv555x3vjwz7rh4r2cw6wj8p3wq4hcf107r555c0"; depends=[crul dplyr DT jsonlite miniUI plyr R6 shiny stringr tibble xml2]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; - rcssci = derive2 { name="rcssci"; version="0.1.0"; sha256="0pivvzf19ms242lpm8k217iv4apxx02m95zg0hz5j8kgip42r2xj"; depends=[Cairo dplyr ggplot2 pacman patchwork rms segmented survival survminer]; }; + rcssci = derive2 { name="rcssci"; version="0.2.0"; sha256="1kq94mxxadr08ybsql1mdw70g4sl9vb6jmv3rkypscpr6gb8gfxd"; depends=[Cairo dplyr ggplot2 pacman patchwork rms segmented survival survminer]; }; rct3 = derive2 { name="rct3"; version="1.0.4"; sha256="1xm5kni2mnpzby8basmwbm1abg615i4mlf6fn9jr5il94q1bdgly"; depends=[]; }; rcube = derive2 { name="rcube"; version="0.5"; sha256="1162y7fs3fsbb5jj66g9kvxxhggprlifrabqbb9lqm8rrdwhz3r9"; depends=[magrittr]; }; rdacca_hp = derive2 { name="rdacca.hp"; version="1.0-8"; sha256="0fmb8gigihf82gdz4yijfchwcw6s1jz91kfpjp0y6cs412lmq4ga"; depends=[ggplot2 vegan]; }; @@ -15066,7 +15159,7 @@ in with self; { rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; rddapp = derive2 { name="rddapp"; version="1.3.0"; sha256="1yh5yx0jfvxs566kh4dmx4k9h6gh7n4rvvv8aw4mr52ihisradqm"; depends=[AER DT Formula lmtest plot3D R_utils sandwich shiny sp]; }; rdddr = derive2 { name="rdddr"; version="1.0.0"; sha256="0biq1nxfhkbmay70hfp5yg6zakzcdr7rp0x2zpmyq200cwyyr6lm"; depends=[broom dataverse DeclareDesign dplyr estimatr fabricatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; }; - rddensity = derive2 { name="rddensity"; version="2.2"; sha256="00xmdy3885j3j5sh3civlgggscr946gh7ibd6namqhbzhsnpwrd3"; depends=[ggplot2 lpdensity]; }; + rddensity = derive2 { name="rddensity"; version="2.3"; sha256="160sxsxqq20s5k9c8vccws17v73ninlpjr9wws9y47204ihxx27r"; depends=[ggplot2 lpdensity]; }; rddi = derive2 { name="rddi"; version="0.1.1"; sha256="19izmky8rwz98i6w76mac9b1sppjdpa48jm33gy38zd3k6k2054j"; depends=[glue rlang xml2]; }; rddtools = derive2 { name="rddtools"; version="1.6.0"; sha256="12lxdpazfhwn5kkzs91qhs0xcky30dj01yp0v5708ahr1ywqdxmd"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; @@ -15085,7 +15178,7 @@ in with self; { rdomains = derive2 { name="rdomains"; version="0.2.1"; sha256="1gpgryfdv4dhv98nfnr15lqq9ndwi8q17rwm5z7j2klgi5d644ld"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix R_utils urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpower = derive2 { name="rdpower"; version="2.2"; sha256="0v598jqka5skffbzb4knfmm5hfbg6gmwjgbclv774wrxxn62sj4z"; depends=[rdrobust]; }; - rdrobust = derive2 { name="rdrobust"; version="2.1.0"; sha256="132nxql163r71xw63qbg6g90cigfjmg4svaln247jrlfbwwnvjiq"; depends=[ggplot2 MASS]; }; + rdrobust = derive2 { name="rdrobust"; version="2.1.1"; sha256="18345w89w3phkfp4s59k10iha2ywgnrgdm61f8a9ixvhd3vv2qr0"; depends=[ggplot2 MASS]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; rdtLite = derive2 { name="rdtLite"; version="1.4"; sha256="0m2fxwz0h4rriw62g2hp20iw6ddbq5l8n80z9xgxk49n6pfm1ywj"; depends=[curl digest gtools jsonlite knitr provViz rlang rmarkdown sessioninfo stringi XML]; }; @@ -15094,7 +15187,7 @@ in with self; { re2 = derive2 { name="re2"; version="0.1.2"; sha256="13cxq6zw66b0wqwv19kkgn8z9kx1p9x1z1fv9cgn1iq7v1br8gm4"; depends=[Rcpp]; }; reReg = derive2 { name="reReg"; version="1.4.4"; sha256="10x4gr41brdnpk2swhh3nlhw1qwirxkphmj7dh5sbc63hnw48ih4"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; reactR = derive2 { name="reactR"; version="0.4.4"; sha256="15c0ij3xglsdavkpzgnkbyl5yb39jrn6zhlrdjiwp1m9cnrqzf2w"; depends=[htmltools]; }; - reactable = derive2 { name="reactable"; version="0.3.0"; sha256="0k9h1im0ncz0iv3l7d1y1gghx1i5r52k5cywszk00saz4fdd9r1q"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; + reactable = derive2 { name="reactable"; version="0.4.1"; sha256="1kcxxlrc6ww70anqrcnrvj7kn0i15cf2ylpaq6fh2kdkyy57d05k"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; reactlog = derive2 { name="reactlog"; version="1.1.1"; sha256="1njihrnq1x162nc2wk16kj1l0vpvk8xcdgjvj36arw4z8nv8wpah"; depends=[jsonlite]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; @@ -15105,7 +15198,7 @@ in with self; { readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; readJDX = derive2 { name="readJDX"; version="0.6.1"; sha256="19aw7jafgg6d6q5xmsphpkyakad6m1x1062h3nxkmfma9xcy4ns4"; depends=[stringr]; }; readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; - readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; + readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.2"; sha256="1kq1v9y013n12ic3dwxxnvncq635w71d6wkpcvcz6dw45bjkc68k"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.7.0"; sha256="1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"; depends=[cellranger readr stringi xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; readSX = derive2 { name="readSX"; version="0.8.3"; sha256="1j04hdn7aqzf0s5zdwzsqckqlnjzag0d83d5b3lq6dq9z3xgjc7d"; depends=[cli readxl rlang]; }; @@ -15130,20 +15223,20 @@ in with self; { readxl = derive2 { name="readxl"; version="1.4.1"; sha256="1ym11mldwj31lgk5av264v8b2zn7fmq5nd30rnm1pchgjizvpgpn"; depends=[cellranger cpp11 progress tibble]; }; readxlsb = derive2 { name="readxlsb"; version="0.1.4"; sha256="1qnfijspx8zwsmr1i6qb7vgaxazmvshq5mcxn79y0r2spszq419i"; depends=[cellranger Rcpp xml2]; }; realtest = derive2 { name="realtest"; version="0.2.1"; sha256="0868ng2vg91c3wsx6c13k7cii2519k1algs8a6pgf4r01jvja5pz"; depends=[]; }; - rearrr = derive2 { name="rearrr"; version="0.3.1"; sha256="1mp0r5rg6mn27pp6f2z5b0r8hsx9spdywxkcx7ba6bjmfqrhqsa5"; depends=[checkmate dplyr lifecycle plyr purrr R6 rlang tibble]; }; + rearrr = derive2 { name="rearrr"; version="0.3.2"; sha256="0maz430czq4dgs7x5yc7wf0kc4p66iaisbg0gj7gzahd5833fwfq"; depends=[checkmate dplyr lifecycle plyr purrr R6 rlang tibble]; }; reasonabletools = derive2 { name="reasonabletools"; version="0.1"; sha256="08i7wy4jic5v9ka7j716lj6p9r55sv46sqrxsy7ad6sgjvrzn0ss"; depends=[]; }; rebird = derive2 { name="rebird"; version="1.3.0"; sha256="1lsmrkp5zfwr9jr26bzw2mk2z4261ylz7qclb0a4j0ma8vrd6f5j"; depends=[assertthat dplyr httr jsonlite]; }; rebmix = derive2 { name="rebmix"; version="2.14.2"; sha256="06sizf7wf63hnc26sp4b4qjndg4bhyxicabrnh7vwp53x3x27pgg"; depends=[]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; }; - rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; + rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-2"; sha256="1hq5mr1v8ziikmkncb9ix11877rmzbjhz54nigwbkswbjwj7vhdf"; depends=[rebus_base]; }; rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; recapr = derive2 { name="recapr"; version="0.4.4"; sha256="1grp8aczn3qjm8ihn2466v5yay60vwyf1x7jsmihgxlvgwki6dh7"; depends=[MASS]; }; receptiviti = derive2 { name="receptiviti"; version="0.1.2"; sha256="17i9amb20nrxy4lj8f98jfkkpg6hr8lw7j90ngidznyrprlwnwr7"; depends=[arrow curl digest dplyr future_apply jsonlite progressr]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="1.0.2"; sha256="03k7spw5vivj35lwqj8xj259smgc04qxkdimk5ck9yj656d5lyqs"; depends=[cli dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; + recipes = derive2 { name="recipes"; version="1.0.3"; sha256="0pi7j1jj5dmc5kzx6zkm691xya7dw4fn8c8nb2x3gs8mp14spzhg"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; reclin2 = derive2 { name="reclin2"; version="0.2.0"; sha256="1139fx544hi1g1la81rwndbad5r2wi21g4yj2yh6l8w7m8xbn56z"; depends=[data_table lpSolve Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; @@ -15169,6 +15262,7 @@ in with self; { reda = derive2 { name="reda"; version="0.5.4"; sha256="1lrfbcvxgbbpi7l3vls3rdj8y3w30gg5f1fjcfscmykvp0i01j3d"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; redcapAPI = derive2 { name="redcapAPI"; version="2.3"; sha256="1myycwdrlw1405fxc82zd8ps8bhdvf2ffsb91pia5ijf6952v8pf"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; + redditadsR = derive2 { name="redditadsR"; version="0.1.0"; sha256="00kn34d8277f8m4xigr28lpq4s55lvli4xw70g4cbsir7m6ibklv"; depends=[jsonlite]; }; redist = derive2 { name="redist"; version="4.0.1"; sha256="1xmkvj48aqm6shix00c21bvfni6fjs099g40siwyln4cgmqc57c9"; depends=[cli doParallel doRNG dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo RcppThread redistmetrics rlang servr sf stringr sys tidyselect vctrs]; }; redistmetrics = derive2 { name="redistmetrics"; version="1.0.2"; sha256="1jq4qz43j7qjzx2pac3i1p2h331pgj8z9zfg4s1dhn56rwscn8f5"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; redland = derive2 { name="redland"; version="1.0.17-16"; sha256="1nzxyczsz274751z48glh8qzv1v9rdv3raq6whyp63nsi2xdri90"; depends=[roxygen2]; }; @@ -15208,7 +15302,7 @@ in with self; { rego = derive2 { name="rego"; version="1.5.2"; sha256="11c8hanfm8n9n8h7a2g3j9x2zy5njfwf19w7d0xydi9pklppy6gc"; depends=[Rcpp]; }; regplot = derive2 { name="regplot"; version="1.1"; sha256="048w0hnd2y8k27msjhw2g4ygck6i09698qk24sz7563z82gvj52w"; depends=[beanplot lme4 sm survival vioplot]; }; regport = derive2 { name="regport"; version="0.3.0"; sha256="0mbx1ja1mbhd0z7jcxjrs6b8ldp87ym21fyqigx3w295kh9zm0xx"; depends=[broom_helpers data_table dplyr forestploter glue parameters R6 rlang survival]; }; - regr_easy = derive2 { name="regr.easy"; version="1.0.1"; sha256="1mdp3c0hn0y71ygnpr7jg3rifm77a2x8kmza34gln7w808avdxvf"; depends=[ggplot2 stargazer]; }; + regr_easy = derive2 { name="regr.easy"; version="1.0.2"; sha256="18b4lznnyqyz4y5ig1dp21kmxqc488c199ss5j91i2v5d1qj2sk8"; depends=[ggplot2 stargazer]; }; regrap = derive2 { name="regrap"; version="1.0.1"; sha256="0yrxhlam7jmxwk1v53kllv6ja1m938symfvqp84xb278r3wb1wv7"; depends=[mvtnorm]; }; regress = derive2 { name="regress"; version="1.3-21"; sha256="0mkf1dyg0r09ifdvmc3g6b0q0h819j0kfh1cb33r1vsr8yfjvgbz"; depends=[]; }; regressoR = derive2 { name="regressoR"; version="2.0.1"; sha256="0h5f085vpmvjzrr3wiq7gvj0cma41szikmp8iaczhc04cdj6k18b"; depends=[DT e1071 echarts4r gbm glmnet golem htmltools kknn neuralnet pls randomForest rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs]; }; @@ -15218,7 +15312,6 @@ in with self; { regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtomean = derive2 { name="regtomean"; version="1.1"; sha256="0xw0pany9cwfxdn26ckk6fdjnqx1916288mhphsnvwns3383nq4k"; depends=[effsize formattable mefa plotrix plyr sjlabelled sjmisc sjPlot]; }; regtools = derive2 { name="regtools"; version="1.7.0"; sha256="00g50dcfy93rgy9a2l24rsjgwk1575gxhpg9dy5r9928nwwd6lx9"; depends=[car data_table FNN glmnet gtools MASS mvtnorm polyreg R_utils rje sandwich text2vec]; }; - regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; }; rehh = derive2 { name="rehh"; version="3.2.2"; sha256="1kgabmg0vq8psdhkfcpdv3iy8gj5hmqzhb8bs8rld49nhnnbqs2x"; depends=[rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; @@ -15231,7 +15324,7 @@ in with self; { reldist = derive2 { name="reldist"; version="1.7-1"; sha256="17kbqqapqmckghv7jizibmicv3bzbycfr3mz4xg3yjp3c2bap4r6"; depends=[densEstBayes mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; relevance = derive2 { name="relevance"; version="1.3"; sha256="185fb5vjq1l6q1yz4qyvm2qli1xpp3wc4d1s17y28daljmdijlw8"; depends=[]; }; - relevent = derive2 { name="relevent"; version="1.1"; sha256="10wy6qbg91bq8cs5fas50nnfw80rpsgr8bqpfbsxcmsh43ilpgg9"; depends=[coda sna trust]; }; + relevent = derive2 { name="relevent"; version="1.2"; sha256="1hv86wfp5x177z8ik4fi7x3hx49i66m6qv459dvij8jypf45rki0"; depends=[coda sna trust]; }; relgam = derive2 { name="relgam"; version="1.0"; sha256="0bfsk2pc3vdk8wgdfpz80x0f9p0z37sq114swqn6z11p298hwf2x"; depends=[foreach glmnet]; }; reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.1"; sha256="1gi1ym48fl0n5migaav8sqz62xa567c68p5f3w9l1y3pqdqrw0qw"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; @@ -15239,17 +15332,17 @@ in with self; { relsurv = derive2 { name="relsurv"; version="2.2-8"; sha256="07wqihyzg6fsvb6n28w3xag66q3rxfv154kqpg2hxj348c58chgb"; depends=[date ggplot2 pammtools scales survival]; }; rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; rema = derive2 { name="rema"; version="0.0.1"; sha256="15b68pynac9ff9bina0mf94absvfsn21xcdmvd4lbl97pxwj83ph"; depends=[progress Rcpp Rdpack]; }; - remaCor = derive2 { name="remaCor"; version="0.0.9"; sha256="1rddxwhwn5m34p1ga2i42sfv6m9lmj4ffsn3jv2f9g82nh6q6gv3"; depends=[clusterGeneration ggplot2 mvtnorm Rdpack reshape2 RUnit]; }; + remaCor = derive2 { name="remaCor"; version="0.0.11"; sha256="0hhk1zrjz6sxg219h9ca7jya0vc8dmrvwaddajkcdns6bv3rj1km"; depends=[clusterGeneration ggplot2 mvtnorm Rdpack reshape2 RUnit]; }; remap = derive2 { name="remap"; version="0.3.0"; sha256="020a7ii90j8wh6f98jmryky6b4xcv4vqd47kah4yqk42z22wixb7"; depends=[sf units]; }; rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; remedy = derive2 { name="remedy"; version="0.1.0"; sha256="1lsa5az9jwy4ngjmfzcb7qj4wm8phsgajlnp5kwa4nav0g1dhb4s"; depends=[knitr rematch2 rstudioapi]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; - remiod = derive2 { name="remiod"; version="1.0.1"; sha256="0pqfq5k546b435mglyzw5cc1vclsp8w1gxy0a3g3bjjxga3dkq17"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; + remiod = derive2 { name="remiod"; version="1.0.2"; sha256="1darwljspxm6mkkp0d7xx375kvhlfwpzxc93yr2mb0mwi2877yi9"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; }; remotes = derive2 { name="remotes"; version="2.4.2"; sha256="05m5dgv0nba5vhjbdkd8z5lbhpfxgkw31j58am7vz1d44igqgvzj"; depends=[]; }; - rempsyc = derive2 { name="rempsyc"; version="0.0.9"; sha256="0hm0d2743x1g79n6cl3mhffhhxxq4ia8104frxpc6c3fxnr0fjj0"; depends=[boot car dplyr effectsize flextable ggplot2 ggrepel ggsignif lmtest qqplotr rlang]; }; + rempsyc = derive2 { name="rempsyc"; version="0.1.0"; sha256="1by47r69frid5skbm46msrpif22h7vsq6fjwqydp7cg7h901q3sz"; depends=[dplyr effectsize flextable insight performance rlang]; }; remss = derive2 { name="remss"; version="1.0.1"; sha256="15s3qvcfyp1880ddzpvgiw3q5av21052iy1vnpw0hib5pb7xfkfb"; depends=[survival]; }; renderthis = derive2 { name="renderthis"; version="0.2.0"; sha256="1hvqwq2w30j29pwjm498mza9zxg8ga5bizm795hmdbz1k30m4j3p"; depends=[cli digest fs jsonlite magick pagedown progress quarto rmarkdown withr xaringan zip]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; @@ -15264,7 +15357,7 @@ in with self; { repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; replacer = derive2 { name="replacer"; version="1.0.2"; sha256="1vpa3v64nsxqalw9ca6zysfaqii797mm3qsn4cfdi7q72nl46pr1"; depends=[data_table]; }; replicateBE = derive2 { name="replicateBE"; version="1.1.3"; sha256="079fkrp9jhp3qr5a1wvz66ldqxbj2pqarmxq5f1adqnyym2aw684"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; - replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-3"; sha256="1h680xn403fm98ywyxqwhq7llsaghgd4ffjq7r5bdb1r9ahvxrv0"; depends=[spatstat spatstat_core spatstat_geom spatstat_utils]; }; + replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-4"; sha256="04rppb9fvympa5zgasjb8ybk8n3pb2nlvmwpdx3lsvfcpsmnibmg"; depends=[spatstat spatstat_explore spatstat_geom spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repmod = derive2 { name="repmod"; version="0.1.7"; sha256="1rpmvxfw2m3bisi5g90sdfm8wmwg2gv9rzblq9kl70kvrs8pj1qs"; depends=[boot flextable lme4 lmerTest officer xtable]; }; @@ -15274,7 +15367,7 @@ in with self; { reportROC = derive2 { name="reportROC"; version="3.6"; sha256="1hfgyikd7l14yfr2cnabjbb67svydj1snfcagc4w4fxhdwqhd3f2"; depends=[pROC vcd]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; reportRmd = derive2 { name="reportRmd"; version="0.0.1"; sha256="1vxjb4sq353nzv3q3cymp02g6y6z338xv29v0nf0j7v6kik0xzq0"; depends=[aod cmprsk geepack ggplot2 ggpubr gridExtra kableExtra knitr MASS pander plyr rlang scales survival]; }; - reporter = derive2 { name="reporter"; version="1.3.7"; sha256="0snxidccxc65x7bpj4hcidphpr74wpx9dybwr4k0bshgdgs1nq1k"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; + reporter = derive2 { name="reporter"; version="1.3.8"; sha256="1m7bjk58fj8gzckn803zz8yz5hjj4ccyz5l1dnd14ccp3r6im5lp"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; reportfactory = derive2 { name="reportfactory"; version="0.4.0"; sha256="0mkk9gyd3l6m33mkc6w3fmgrzc6na03kwxxwgn0zb83bjpmyyl1z"; depends=[callr fs knitr rmarkdown rprojroot rstudioapi yaml]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; @@ -15283,15 +15376,14 @@ in with self; { represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="2.0.2"; sha256="14khx09yzn97xhags48lvym1g37h1l2ymvw6r1jlldhjc7i1cnx8"; depends=[callr cli clipr fs glue knitr lifecycle rlang rmarkdown rstudioapi withr]; }; reproducer = derive2 { name="reproducer"; version="0.4.2"; sha256="0ip7zh8jnjdwl0lawh60v1rcl0dvrxb6dbrlldb6l1vzbn530him"; depends=[dplyr GetoptLong ggplot2 gridExtra httr jsonlite lme4 MASS metafor openxlsx readr reshape stringr tibble tidyr xtable]; }; - reproducible = derive2 { name="reproducible"; version="1.2.10"; sha256="0agphafd2khv2xk0fwqr2y3imn8fzwa3crpqbp4n3i9qkpmkmvpw"; depends=[data_table DBI digest fpCompare glue lobstr magrittr raster Require rlang RSQLite sp]; }; reproj = derive2 { name="reproj"; version="0.4.3"; sha256="0bcg5bz2sl4d31iwr55nwr85p1jna9fpbcli26lf04dwznwmx0rl"; depends=[crsmeta PROJ proj4]; }; repurrrsive = derive2 { name="repurrrsive"; version="1.0.0"; sha256="1nmy88h2bfv2bad282kbrmnkjx9d8klgzv4mm8nspm049s09ydmz"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.5"; sha256="1j8gxacbfnaqvrhjqy851yb8shc73issv08yca6mbnx6aq34wcrd"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; - requiRements = derive2 { name="requiRements"; version="0.0.1"; sha256="17afbpny5j2rssi173k7sxi9q2syskjh8h0h89z24dqsbh3947mz"; depends=[remotes]; }; + requiRements = derive2 { name="requiRements"; version="0.0.2"; sha256="1y98fdqrql1jg18jqwcxwn511jl5ccv3w12q36gc488m3ym1qcyc"; depends=[remotes]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; rerandPower = derive2 { name="rerandPower"; version="0.0.1"; sha256="1vk0lrd7hc499prshj3dfyyn2iaz9z6916xsw31ax1l5mipys4mk"; depends=[Runuran]; }; - rerddap = derive2 { name="rerddap"; version="1.0.0"; sha256="13fl8d5x6gmnd1m2x3byikdyy8pv96nikh4nnbd6p8jamxcyjbrc"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; + rerddap = derive2 { name="rerddap"; version="1.0.1"; sha256="1fw678w5jyxlkpxfg88w0lxfyvgqwj4qffqn0hi5wzzysz70y0x7"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; rerddapXtracto = derive2 { name="rerddapXtracto"; version="1.1.3"; sha256="0c8cq7hrc10i758ywwf4brwdk1082biiwzl3h2lcn54fdmj7pkm9"; depends=[abind dplyr ggplot2 httr maps ncdf4 parsedate plotdap readr rerddap sf sp]; }; resample = derive2 { name="resample"; version="0.6"; sha256="0rajp5kmr8qgwzhy7wfmhm7fllk9ywm7hz44f5ws94lcn44q158v"; depends=[]; }; resampledata = derive2 { name="resampledata"; version="0.3.1"; sha256="1nxjqvxxvycccmh1n7lpc4k8zmwnciicfr5rzfid1icij5fzw3ak"; depends=[]; }; @@ -15299,19 +15391,20 @@ in with self; { rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; }; resemble = derive2 { name="resemble"; version="2.2.1"; sha256="1r1wanqwb7i9dr1himdgp9sl5c0582rixlf240rczfr7c4skn5mp"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; + reservr = derive2 { name="reservr"; version="0.0.1"; sha256="1p6k561hj4127g1mi5xwic8zmnj3mvklpc4a38ki5cgvw84kb6xa"; depends=[assertthat BH generics glue keras matrixStats nloptr numDeriv purrr R6 Rcpp RcppArmadillo RcppParallel rlang]; }; resevol = derive2 { name="resevol"; version="0.3.0.1"; sha256="13whjldpidagyaqh2s7isvs8qms6zw82v067h4zyrzfzh6q3xsa8"; depends=[]; }; reshape = derive2 { name="reshape"; version="0.8.9"; sha256="0j203qmc076x5lp6q2xi4dq4xdb73jmsa42rpxp1c37knnrph4br"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; resourcer = derive2 { name="resourcer"; version="1.3.0"; sha256="1glsmv5r7fgyn8sz8mk1i4n160hj02hyksncj8hgml3k5iips10s"; depends=[httr R6]; }; - respR = derive2 { name="respR"; version="2.0.2"; sha256="0670hy7gg8bbjkjqcvchm83jr57725r8szix66mqggwx0xwjcxj0"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; + respR = derive2 { name="respR"; version="2.1.0"; sha256="0xq34bv6r88rr9b3gfwqj8d8m9jqz1ryv80r4anj212fbblbji58"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.3.0"; sha256="1ffhkvf8a8zhkysghd636k47bl7k5bdwkkg4m0pr1zlxpfrif82c"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.0"; sha256="0iyx35kq82w18v8c7lfz7x31c2cgywn4xh8hg0ad3gsdygadq8hq"; depends=[]; }; restatapi = derive2 { name="restatapi"; version="0.13.3"; sha256="0560y2pr69pm4m5dm2xhm549rspxwhryprxhfvhzv0zpn4df01di"; depends=[data_table rjson xml2]; }; restaurant = derive2 { name="restaurant"; version="0.1.0"; sha256="1dr9nw5xkll1wnra2xi8dg2yiv85nibdg1i9lsn44v7cgr9vb32j"; depends=[]; }; - restez = derive2 { name="restez"; version="2.1.2"; sha256="13h84qxfpmq6mfa2xkaimjisz71jy4fbap8y8zdla43zlyhnrvv6"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; + restez = derive2 { name="restez"; version="2.1.3"; sha256="1q008ykk75h19zqnkv339qx7zb7vmab8f9ywvr8qb7l1n3yxah76"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; restfulr = derive2 { name="restfulr"; version="0.0.15"; sha256="14p6h0gjknqy5z2fprxw7waf4p0cd2qmp18s7qig4ylqn8gqzzs0"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; - restoptr = derive2 { name="restoptr"; version="1.0.2"; sha256="1dx1ksymil7mbdkargmhdnzp5x8hnjlxznxhxbqksz3iw6549503"; depends=[assertthat crayon magrittr rJava terra units]; }; + restoptr = derive2 { name="restoptr"; version="1.0.3"; sha256="0ksvzpikhbxjass2kbl70s5jjras2ylldnw3bgwz9499vbpn9raa"; depends=[assertthat crayon magrittr rJava terra units]; }; restorepoint = derive2 { name="restorepoint"; version="0.2"; sha256="0pjp5dvycvfg75hhj8lrr2lrjn6n6bqj0ziwyd87lyi15b9j8w4s"; depends=[]; }; restriktor = derive2 { name="restriktor"; version="0.3-500"; sha256="17a56mdxx1ss9pb628dz44y5q5vr2q3yg2lr6yj9nxz0k3pwqvv3"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.5"; sha256="0k3s2i102hvsag7jiahgfpjc09646xjpxcpv5x3d91ch3xipdc0b"; depends=[dplyr rmarkdown useful]; }; @@ -15325,7 +15418,7 @@ in with self; { retry = derive2 { name="retry"; version="0.1.0"; sha256="1yfcfvszfjnvvnjcywgchyiyj3jk9nmvk3h40g6bc24xapfkfl2p"; depends=[later rlang]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="3.1-0"; sha256="1a2dmcfmnyzpfkyir3g1sz6s8dan2lzapq8v1dph5znmascv1180"; depends=[dplyr purrr rlang]; }; - revdbayes = derive2 { name="revdbayes"; version="1.4.9"; sha256="1m9xsqhgkx47wa4ya6f4yagyzjvrz3br9800h5zpaxj7smd86lbd"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; + revdbayes = derive2 { name="revdbayes"; version="1.5.0"; sha256="16dlsc5fqbsijnq3rlvvdd2bdyvx05fhzz7cbazfdxl3akpsc136"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.4.1"; sha256="1m8y1mj39bnf9q0n9mi0ashvb79lksx5dfkxb04qj2h5kkyxg49g"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; reveneraR = derive2 { name="reveneraR"; version="0.1.2"; sha256="0l5l9lqwisphjpf2ni0c0a3cg4xpkxy3sk4nvj93f6pra2fmg4rg"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; @@ -15345,6 +15438,7 @@ in with self; { rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.3"; sha256="1f0ljy51xqqrncdg4xpic6ir8zlgvp952pr0s217v7ybgdzs42v6"; depends=[dplyr ggplot2 ggpubr magrittr randomForest ranger titanic]; }; rfacebookstat = derive2 { name="rfacebookstat"; version="2.8.0"; sha256="08hffwvysvh13ayj2326nmybrz0x3xa5g7l66d40j3cwzd29hiaq"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; rfacts = derive2 { name="rfacts"; version="0.2.1"; sha256="0h2ryyl5zc3pxi85y0qwadfz7sdzz0m6ilwzabw317sb0z5lms5b"; depends=[digest fs tibble xml2]; }; + rfars = derive2 { name="rfars"; version="0.2.0"; sha256="1shw96m11l9119ngrsc6p4l5i2f5vfd0snj75jjwpjl8gx4m58fv"; depends=[data_table downloader dplyr janitor lubridate magrittr readr rlang stringr tidyr tidyselect timetk]; }; rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.0"; sha256="1s7awczna9dxdq97sr5fsbs4qv7rx4wi2z3inwdp33md1bvyq4i7"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.8"; sha256="10shwl1y9220m7ld5w9fjsjzy5yg8myrz9cz97ps9z2bw7bvka5j"; depends=[ggplot2 httpuv httr RJSONIO XML yaml]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; @@ -15354,7 +15448,7 @@ in with self; { rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; rflashtext = derive2 { name="rflashtext"; version="0.1.0"; sha256="0200a25gmb1ax96w2m8069s154prvahqb0vczw4ifhcb52i0fsxp"; depends=[R6]; }; rflexscan = derive2 { name="rflexscan"; version="1.0.0"; sha256="1azjdri1dnxqd128p3iya1x36bbhhrckmj08rp23jzfi5zd71c8s"; depends=[igraph Rcpp rgdal sp]; }; - rflsgen = derive2 { name="rflsgen"; version="1.2.0"; sha256="1ixpi6cr6nv6wkjr0ijv79ivzfyn66y2gylhpay6ndzki7ylh57k"; depends=[checkmate jsonlite rgdal rJava terra]; }; + rflsgen = derive2 { name="rflsgen"; version="1.2.1"; sha256="0cfvbzc9a09738ygrq5jsjniblb8slfvmnscgk7jx0dprgcxj7yn"; depends=[checkmate jsonlite rJava terra]; }; rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.3.2"; sha256="03rz1cas0anmfpnax66nr3bsiqgkq02wbvslvqc0q9ayl6p02avh"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.6"; sha256="01xv6ds3h8gvi1wi5hgy3r1dhi0767mcgsnshvhva3bnvf1a8398"; depends=[]; }; @@ -15362,15 +15456,17 @@ in with self; { rfvimptest = derive2 { name="rfvimptest"; version="0.1.2"; sha256="0mfpwa0f3pjvjjs5q4g74ljkzs382dzr86aayqf2nnhsaz24aphq"; depends=[party permimp ranger]; }; rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; rgabriel = derive2 { name="rgabriel"; version="0.9"; sha256="1za8njmasl7kmmiqgxhr8k2p1kygkadkqgim9wgyjkcnzljg46kb"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="3.7.3"; sha256="0d8cdqrr6idwhkqqqjylix66h7b4pfx53c2ywaj8adcsv0051dhz"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; - rgdal = derive2 { name="rgdal"; version="1.5-32"; sha256="1vbkyhw8nd7dw1r53qisphav31x6zvpbzilvnlvbjbj9hzhs90s5"; depends=[sp]; }; + rgbif = derive2 { name="rgbif"; version="3.7.4"; sha256="0q0y0jk4lx5s47a7fp2nifjp2nimrr8rjny451863vq6gij80zcz"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; + rgdal = derive2 { name="rgdal"; version="1.6-2"; sha256="0g83r9lzq79hs7mk31kqym1sjqnmk53j3nikrn2vk257v854pavy"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.5"; sha256="1yq0k935p23qgwaffda8zk5p5546z5i27kivyqf8hg461cn73b3x"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; + rgeedim = derive2 { name="rgeedim"; version="0.1.0"; sha256="0s60rgm8j7s4vd8djfx0m4sqs9xwqqnk5lvrbgbr39g3y9ads41n"; depends=[jsonlite reticulate]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; rgenius = derive2 { name="rgenius"; version="0.1.0"; sha256="1gpglnhicyv16ym224wzaw52w9xr63slm75wvidl3z14izzyy7ga"; depends=[doParallel dplyr foreach httr purrr rvest stringr tibble]; }; rgenoud = derive2 { name="rgenoud"; version="5.9-0.3"; sha256="0pxmisc0vsdchqaaxqcblnhhviizgcwhvsbklr3rq7vrmn6hlmii"; depends=[]; }; rgeoda = derive2 { name="rgeoda"; version="0.0.9"; sha256="1yl2liin9fvcry2wi3223kq6xdxm6mkkkdjayp9gizllnhpf71z8"; depends=[BH digest Rcpp sf]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.4.2"; sha256="08dps73sdlhsyzkykw3y9ckxazznymfsx63p9rcssghb2silw9xw"; depends=[httr Rcpp]; }; + rgeomstats = derive2 { name="rgeomstats"; version="0.0.1"; sha256="1fy5fvkifv80sf3x0d2y3vyv7adn0h57q1hvip1phcvxg8p5prff"; depends=[cli purrr R6 Rdpack reticulate rlang]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.3.9"; sha256="0l0sqkvjkzp4lmyk55l7zc02y04sa43cps47005gq8c38kyks45k"; depends=[readr sf stringr]; }; rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; rgeos = derive2 { name="rgeos"; version="0.5-9"; sha256="1m73y0nwrdwsjrl48c4fg1kdqnh79835brnmxv9ak01ndbzcp45b"; depends=[sp]; }; @@ -15395,9 +15491,9 @@ in with self; { rgw = derive2 { name="rgw"; version="0.3.0"; sha256="0hzkajmvqkmv6c238rdgyc6g16h96d5a0lnajnn5m87j0gwsl6wa"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.8"; sha256="07fj6npq65pq836vdwblkhprdaq4i4f13cwdmm9gmxrnk72xj7lh"; depends=[htmlwidgets jsonlite magrittr]; }; rhcoclust = derive2 { name="rhcoclust"; version="1.1.0"; sha256="1d9a29h4h6z04vjjdfi0sx7wpl8iw5zg2ymjpjlppzbbzzq2l8n2"; depends=[fields igraph]; }; - rheroicons = derive2 { name="rheroicons"; version="0.4.0"; sha256="152949yy5kna10f68g06dc7h0m9jql5n2rp5z6hmp8xg3508yz9x"; depends=[htmltools shiny stringr]; }; - rhierbaps = derive2 { name="rhierbaps"; version="1.1.3"; sha256="0i4sr2wwzzl8vki5zihnd8v4ia2kji09cmf4ld07b6k099g5xprr"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; - rhino = derive2 { name="rhino"; version="1.1.1"; sha256="1d3krs76hcdlkbnwip5pq2i7wwf5wp9q4c9jkgsd9fgq85x7qqjs"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; + rheroicons = derive2 { name="rheroicons"; version="1.0.0"; sha256="02yknpdgfjjkkk9456pxfl9qhaphwrhbxw7fh04ki9a1rgalk0xw"; depends=[htmltools shiny stringr]; }; + rhierbaps = derive2 { name="rhierbaps"; version="1.1.4"; sha256="0717h3j9pamz0hkwcfadivhfh9n2bd9l55kvll1ipc4dz85cp324"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; + rhino = derive2 { name="rhino"; version="1.2.1"; sha256="1qrm9apiy51khan8v63i60kwmd2axp8qg04mqc5cqinbvdd3qps5"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; }; rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; @@ -15409,12 +15505,13 @@ in with self; { rhype = derive2 { name="rhype"; version="0.3.0"; sha256="16nzycgvp8xrjjly7j96kvy816xna5i5rdnd27gmyjmpf0dvp429"; depends=[Matrix R6 RSpectra]; }; ri2 = derive2 { name="ri2"; version="0.4.0"; sha256="0k85rmjl0inida4wx6d612vp35sr4cg2zsmrby8rl7p4gwrbix5v"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; riAFTBART = derive2 { name="riAFTBART"; version="0.3.2"; sha256="0nj7xqvb711fi764dk7v60sr5s5955cglyf54zkdc6ax365xlnj0"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MASS MCMCpack msm nnet randomForest RRF stringr survival tidyr twang]; }; + rib = derive2 { name="rib"; version="0.18.2"; sha256="1868rj0gd61d8jz58nzmjh3nss4bgl9hg49vg0pr1vyf83b154ap"; depends=[R6]; }; ribd = derive2 { name="ribd"; version="1.5.0"; sha256="11plql3fbvfw7ldrz3hs1x27j2l7pm2nd3alanr78yvilv0z16rf"; depends=[glue kinship2 pedtools slam]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; - ricu = derive2 { name="ricu"; version="0.5.3"; sha256="1y5v42hw6wqkllg0kahwj4akaf85svyl5r8g5jbq9dpr85dnyvgx"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; + ricu = derive2 { name="ricu"; version="0.5.4"; sha256="062dzfygi3zc1bn40073hmd0bq4xisz3l8winrqk540sw08mv7mm"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; ridge = derive2 { name="ridge"; version="3.3"; sha256="1xb03ir706k2c3y2kpa4dvnz5i0qhm2ghm7syng0kalpdz7swbaw"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.6"; sha256="0q7m6918kh9drlsjns9xg6k13fdilxhm7f8d8d0lqcx1d8kds6f0"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; @@ -15427,19 +15524,18 @@ in with self; { rinat = derive2 { name="rinat"; version="0.1.9"; sha256="05vi5fggqkj64z0sndngjs7vdvxgy2j5xarccllkcrk9mbzyipvc"; depends=[curl ggplot2 httr jsonlite maps plyr sp]; }; ring = derive2 { name="ring"; version="1.0.3"; sha256="1ljmqq7mngxs59nri36w0cx6a6d85qsbk9v9698hfx9asicv398d"; depends=[R6]; }; ringostat = derive2 { name="ringostat"; version="0.1.5"; sha256="1g2425jig3zhrv0vmr5nb5fqj34vcpmvbly7gc94plsv7wvgxvv3"; depends=[cli httr2 readr stringr]; }; - rintcal = derive2 { name="rintcal"; version="0.5.0"; sha256="1vmy92932hapkkjprf785xqxas0dr55hyqpj0w4nvywln4mspdbr"; depends=[data_table]; }; + rintcal = derive2 { name="rintcal"; version="0.5.2"; sha256="0ka401xy6hpmaw2ap2aq29zh3ppqgql5kkhai0vlp74bxfilg8q3"; depends=[data_table jsonlite]; }; rintimg = derive2 { name="rintimg"; version="0.1.0"; sha256="0jzs4mdwpzbpl0wchyhl3cpywk25ayaxalr12p4cnjl7vnmdm7dp"; depends=[glue htmltools]; }; rintrojs = derive2 { name="rintrojs"; version="0.3.2"; sha256="19lpq421hrs1wc9bnimbwxx35p8bbzil3x1h9l28gjayn4djmjsh"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.5.29"; sha256="04jlrhyl0791yxwcpp1s8p1hhkljnijlc5iaxpk56h41w63k39lz"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; - rioja = derive2 { name="rioja"; version="1.0-2"; sha256="19lw6rzcqkdrx8xw12kf096ky4wh4f5xbnksx2iawf4i630nix2l"; depends=[dplyr forcats mgcv sjmisc stringr vegan]; }; - riot = derive2 { name="riot"; version="1.0.0"; sha256="1iv83z21k2a8kclfma1cq4jns4zdpgjrzajcsfl105srvv55n0s2"; depends=[cli fs Rcpp readr rlang tibble]; }; + rioja = derive2 { name="rioja"; version="1.0-5"; sha256="1xggjapks2hipn946r65drq45xb7shhbac56r0njh0fm4wwmdzrj"; depends=[mgcv vegan]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.1"; sha256="07rfqaf5dpj0wgbz65kdxzl762w8k5a2fsfmg1g895y2i5npq6mz"; depends=[boot dplyr ggplot2 ggpubr magrittr MASS purrr rlang tidyr tidyselect]; }; riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.2"; sha256="1n2z1vhslrip209j79wm03wmwqdcnbm939sir2wfs5h2cfv126xk"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; - riskRegression = derive2 { name="riskRegression"; version="2022.09.23"; sha256="1nz4p8v1qv2jjnyl58jqr61achcq8jcg8i81sgz2ai0r70ihlfbl"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; + riskRegression = derive2 { name="riskRegression"; version="2022.11.28"; sha256="1qj8rpqz8i6c4bc3wcvlp28icrr2yaw38azp7d0h495k9klx87b0"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1.1"; sha256="1yb2ipcqipsl92ighcpahjryir86pi59b1d3qiph7yraxbcx2909"; depends=[Runuran]; }; riskclustr = derive2 { name="riskclustr"; version="0.4.0"; sha256="1b5pjnfz6n716fn1va4kl4y3jzf48sm0i2xaxw0225vmmvq06d9g"; depends=[Matrix mlogit stringr]; }; riskmetric = derive2 { name="riskmetric"; version="0.1.2"; sha256="004a888y0srvaazq90l3v1q11qfl927h87420fs03zklkq27bvr1"; depends=[backports BiocManager covr cranlogs curl devtools httr memoise pillar pkgload tibble urltools vctrs xml2]; }; @@ -15457,13 +15553,14 @@ in with self; { rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.0"; sha256="14ndhhxxx7jb9ljhfjxmdrl3kgb1zsrv00kznl2k50fwxx4z66f2"; depends=[kableExtra knitr magrittr RJDemetra]; }; rjdqa = derive2 { name="rjdqa"; version="0.1.1"; sha256="0d7jv3a2a7p7h6jnr5znln06x6m4mksb6cy44xdxir1pwcd1z6br"; depends=[plotrix RJDemetra XLConnect]; }; - rje = derive2 { name="rje"; version="1.11.0"; sha256="1nwd6ym353iw8am1qvcifivp7r892yb1cq9la8nh2hb19rqh8597"; depends=[knitr]; }; + rje = derive2 { name="rje"; version="1.12.1"; sha256="07a1wbn5ps9ygfi25fffgmrzw90izj4yk8gxb47r85x6lvqv1p0h"; depends=[]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; rjqpd = derive2 { name="rjqpd"; version="0.2.3"; sha256="14vbp9s2859h4n3m3bq830nvxvk58h3mvvdnb27qsalbcfwd94v5"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.21"; sha256="1qm27r1w677zg31gsiln60hcciszbymkw78cnaq7s36cbk9mcawq"; depends=[]; }; rjsoncons = derive2 { name="rjsoncons"; version="1.0.0"; sha256="1y6gf9w914wnygd41iwzy0vr16c4mwacx4pjqqncd3z9h120chpr"; depends=[cpp11 jsonlite]; }; rjstat = derive2 { name="rjstat"; version="0.4.2"; sha256="0j79svby5zzg63pks5667jvky0m5csyyrb863lpba4aprd80pig0"; depends=[checkmate jsonlite]; }; - rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.2"; sha256="0kqr2pd3smqxx0h35k8mf7wamdqpqrncjhmvbiap8bwbkhm4sqhb"; depends=[XML]; }; + rjtools = derive2 { name="rjtools"; version="1.0.9"; sha256="0l6l77i584g11p9xgp6mhvlgas3wmxc34xd0vw9ws42v7k1fpv8x"; depends=[bookdown callr cli cranlogs distill fs glue hunspell purrr rlang stringr tinytex whisker xfun yaml yesno]; }; + rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.3"; sha256="0g9wbcgj97pn2z6b9lbh10pr54c3qaam5cxghvn2ppzd8ccwkkbb"; depends=[XML]; }; rkafka = derive2 { name="rkafka"; version="1.4"; sha256="00m9zj2fnd32dhm7gn3fclpmp9r2y06sd8yckdbhlvd784b2d4c9"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.2"; sha256="1z1rn02ymzaq3v3pz206wlm78y591xa9780fwf77i4vfq2k9pxrz"; depends=[rJava RUnit]; }; rkeops = derive2 { name="rkeops"; version="1.4.2.2"; sha256="1b2sdbhx1ar1325mf1xgc561as9x8q8vjqslly9xms2h572c8yn3"; depends=[openssl Rcpp RcppEigen RhpcBLASctl stringr]; }; @@ -15493,7 +15590,7 @@ in with self; { rmapzen = derive2 { name="rmapzen"; version="0.4.3"; sha256="1n44l4sj6s78nr3hqidabkyg9pradk9c1mqfvzhanj2nrfdrwnqj"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.17"; sha256="1gn413pgyfr45mmiv82gymz9r39d41h3ykmai93fihn4ir2nqmxa"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.18"; sha256="08lgzb7n7lll1ff7flcyilnz9afj60npi882c035pyyy4vk7majg"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.5.2"; sha256="1q7qa7y6vv4194r9zfrw5arryw5ygbhcm294a90r9wwzpbk6sqhw"; depends=[psych RColorBrewer]; }; @@ -15505,7 +15602,7 @@ in with self; { rmdpartials = derive2 { name="rmdpartials"; version="0.5.8"; sha256="15dw0pk1hdif839k60swna4li04inf7fzsiq9bxbw2wk5pdkqirn"; depends=[digest knitr rlang]; }; rmdplugr = derive2 { name="rmdplugr"; version="0.4.1"; sha256="16wmrya8wdipqcrh34k4v4iq05aqd0jwf7rg6w1wsvx2i9211xg6"; depends=[bookdown rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; }; - rmdwc = derive2 { name="rmdwc"; version="0.2.1"; sha256="0zbwfi0rsx7mhk6s5798qg1zr7yv8hgw8qazznsd30diyprnyzbq"; depends=[knitr]; }; + rmdwc = derive2 { name="rmdwc"; version="0.3.0"; sha256="0s7k54ggf0zdkkjg8k5jz2kfjpw99i59k82xqgvj7qaxvakm7vss"; depends=[knitr rstudioapi]; }; rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; }; rmetalog = derive2 { name="rmetalog"; version="1.0.3"; sha256="1naqhv81gdcgl2vi2sa3nb006mn8dxc0rdc49v321a5b10bybzvr"; depends=[ggplot2 lpSolve]; }; rmgarch = derive2 { name="rmgarch"; version="1.3-9"; sha256="0sg10j4jp74s65lzs2da2qqdcwgkf71rss9p7f1b14n2yz7xdf1v"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; @@ -15524,7 +15621,7 @@ in with self; { rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; rmumps = derive2 { name="rmumps"; version="5.2.1-20"; sha256="17jm7b7rnq5x5jyyj5pc10zpkp55y9l9amm1rq7cd4qs53w01dka"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.10"; sha256="1yd5gkg4jg3rvqrfl8c5r07lcr37n1p9h1a7b6s45iswd77dg7w1"; depends=[]; }; - rmweather = derive2 { name="rmweather"; version="0.1.51"; sha256="0qd49lr12hc39dwg348b021aqxw57pfcb9xxhp51fvnw6gw6bgqd"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; + rmweather = derive2 { name="rmweather"; version="0.2.4"; sha256="18ajzwm0jb6wklrxp8cmifym4wn22y2rw4llhjxrc98fkis3jgk3"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; rmzqc = derive2 { name="rmzqc"; version="0.1.0"; sha256="03a02d7a7jkvr72lgrbgmphsnlx65ym5gganm7y3lk43ap2zy55m"; depends=[jsonlite knitr ontologyIndex R6 R6P rmarkdown testthat]; }; rnassqs = derive2 { name="rnassqs"; version="0.6.1"; sha256="00daka4pgvmipqq3151jj35fsicpfc06mnim8mm5jx5cyqcvilf7"; depends=[httr jsonlite]; }; @@ -15535,19 +15632,18 @@ in with self; { rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.5"; sha256="169r1b2wvz13n7fcrvl80bidw6cwhng3d9vdji64g5wx1nv27arc"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; - rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; + rngWELL = derive2 { name="rngWELL"; version="0.10-8"; sha256="0ad1mz11l27h6apil2hd7gwz5zhi9jkjrk2jnhbkd8d0wz9g0sis"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; - rnmamod = derive2 { name="rnmamod"; version="0.2.0"; sha256="0dncj3dldb4d1j5m1dypk9lyg5jb2m2fi1k7p9sl52a6bfadcbb4"; depends=[coda dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; + rnmamod = derive2 { name="rnmamod"; version="0.3.0"; sha256="1cb6f5s0m7cciwyy8pd16qf4615k2vh58lgx5mdp9mpybwnvwapx"; depends=[dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; rnn = derive2 { name="rnn"; version="1.8.0"; sha256="1r8hwdc8i2rf4ma53n53hxcc637aizcqs6z6rjbhbvs56hgaxnz1"; depends=[attention sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="1.3.8"; sha256="12mrvvq93535pk9g52h0sl5wdlw0wpqdchghi24fjdr62r44p5sp"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="1.2.5"; sha256="02ka6ibdm9sbx3cffdh1lvr8555iqq3w74cs60djivp56gsvy009"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.1.0"; sha256="1x0kqk060kjw84jlrbcp1z6agc5d96xy0ydfbgvh60cg9v1q8kpr"; depends=[curl ggmap ggplot2 httr jsonlite lubridate sf tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.7.2"; sha256="1q2mkd7r5aqvahx7rrzv58nd6d13gvlw7kjidqhm7z89na94pn8w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; - roads = derive2 { name="roads"; version="1.0.0"; sha256="02gkxvlngf23xv3sh578ynd5jzhlsslnllbvppyasbf4izisng16"; depends=[data_table dplyr igraph raster rlang sf sp SpaDES_tools stars tidyselect units]; }; roahd = derive2 { name="roahd"; version="1.4.3"; sha256="089klcgxry6b8z30h1ssy024lqxqm1bz6qs2kx95qjfl8xgwlwm0"; depends=[dplyr ggplot2 magrittr plotly robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.3.1"; sha256="13m03r2mcs6srn3hk46lrjhyv5px9jyvqsqbxri1h79f31bji58b"; depends=[car cluster cvTools data_table e1071 fda fpc GGally ggfortify ggplot2 kernlab MASS mclust pls Rcpp RcppEigen reshape2 robustbase robustHD rrcov tidyr VIM zCompositions]; }; - robFitConGraph = derive2 { name="robFitConGraph"; version="0.1.0"; sha256="092nc0xnjs2zxd9ij0dl1xggb8mwl8nly284yjhhygmwlwsvhzxm"; depends=[MASS mvtnorm Rcpp]; }; + robFitConGraph = derive2 { name="robFitConGraph"; version="0.4.1"; sha256="0w5x4ndv5r8v7ji3dhmch0di4krphxrclyidfg5b3qbmn1hlhlih"; depends=[Rcpp RcppArmadillo]; }; robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6.1"; sha256="0gmhklk8nayhfl2zfp7mhsawryyn950gdh5lgg3vq1nkl12sc8y7"; depends=[]; }; @@ -15555,7 +15651,7 @@ in with self; { roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; - robfilter = derive2 { name="robfilter"; version="4.1.2"; sha256="0mvpaf6g694b7175bl3yr6lxbwla4pwp7g4y34qb4klgl5n3nw03"; depends=[lattice MASS robustbase]; }; + robfilter = derive2 { name="robfilter"; version="4.1.3"; sha256="1r56p25c0624dxbd9lh8vbdqp69m0fzcfbzdx1kg4v0c25106ysw"; depends=[lattice MASS robustbase]; }; robflreg = derive2 { name="robflreg"; version="1.0"; sha256="0b0iwpn2rdwydwzabf2b5030fma78gjy9640ky0xhhpyfvm28z3z"; depends=[expm fda fda_usc goffda MASS mvtnorm pcaPP plot3D robustbase]; }; robin = derive2 { name="robin"; version="1.1.1"; sha256="1mvv2snvfizwxc743m8kxm3amwgb31079wjc6dlbgdah9f7fja7n"; depends=[DescTools fdatest ggplot2 gridExtra igraph Matrix networkD3 qpdf spam]; }; robis = derive2 { name="robis"; version="2.11.3"; sha256="04yz7i7mfc1jb2qbmm7yy0m6y7jnzck73m9d7hjjj6pc4ljf4cax"; depends=[curl data_table dplyr ggplot2 glue httpcache httr jsonlite leaflet mapedit memoise purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; @@ -15572,6 +15668,7 @@ in with self; { robslopes = derive2 { name="robslopes"; version="1.1.2"; sha256="06j9n4p6pmiydhrm24skj7qlv5ia9f5qwbs8jss5cvmbjad7lqgq"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.5"; sha256="1h8gl14lzbp321rcw4f0snrnjgzcpcmlb5dh7cw9q29w2zkpznpz"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; + robusTest = derive2 { name="robusTest"; version="1.0.0"; sha256="1r20n9zlfq4a2i2n8cnypi8i978d1xsv3jfcq6ka6rvzlzf7xmnj"; depends=[Rcpp]; }; robust = derive2 { name="robust"; version="0.7-1"; sha256="1pv5xvns3p8dpaadf6v0fqz099ml768ahgp271wpiclrcc6cgapg"; depends=[fit_models lattice MASS robustbase rrcov]; }; robust2sls = derive2 { name="robust2sls"; version="0.2.1"; sha256="1dcg8pmyyywspcdn95g41673wf89mmbggwn9gwsr9225w5jl26pl"; depends=[doRNG exactci foreach ivreg MASS mathjaxr pracma]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; @@ -15584,7 +15681,7 @@ in with self; { robustbetareg = derive2 { name="robustbetareg"; version="0.3.0"; sha256="09f4binbi5gcf80fhpxzrmpm2k2xf6f7rcw9g2xzmni8b4cs2l6p"; depends=[BBmisc betareg crayon Formula MASS Matrix miscTools numDeriv pracma Rmpfr robustbase rstudioapi zoo]; }; robustcov = derive2 { name="robustcov"; version="0.1"; sha256="1bgvf9h727aqfb11q976y2ybp3mpghkyd29waypyfp95csp3cf26"; depends=[caret glasso Rcpp RcppArmadillo]; }; robustlm = derive2 { name="robustlm"; version="0.1.0"; sha256="17l2kr9dc3z02b2jswfxal13md4xfpz4sqjfg6kyg6ilab1cfd06"; depends=[MASS matrixStats]; }; - robustlmm = derive2 { name="robustlmm"; version="3.0-4"; sha256="1knyc8c9846hidq8s1zdzagmfvf1rfsx9avhkjdzxaf38n5ai092"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen rlang robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="3.1-2"; sha256="0kvgqf89nf83yr3rcy5lrq7xyjpl157zf3hz7879qpg5swxr1cyz"; depends=[fastGHQuad lattice lme4 Matrix nlme Rcpp rlang robustbase xtable]; }; robustmeta = derive2 { name="robustmeta"; version="1.1-1"; sha256="0f7qj3c01wxhcx86hwjr2gik041vjvnzg444kyn72v7b7fr3nlyz"; depends=[metafor]; }; robustrank = derive2 { name="robustrank"; version="2019.9-10"; sha256="1xikknrmnh95wpvyljdl7v510ddi1g7a88aw3l630s789nq5i02h"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-5"; sha256="1r8v9qjx70s8swh09imq9kzdxg0qhnmk00zrg939mig9b12mw1p6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; @@ -15594,10 +15691,9 @@ in with self; { robvis = derive2 { name="robvis"; version="0.3.0"; sha256="0xzvx3230ydd082jmdlm70vyhjizknngfzhvcbqpdcm403klni5h"; depends=[ggplot2 scales tidyr]; }; rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; - rocbc = derive2 { name="rocbc"; version="0.1.1"; sha256="1307jgkc7dcpvcqddhivx20i88669m0zri14s9anmhxvl3rg624g"; depends=[clinfun mvtnorm pracma splancs]; }; + rocbc = derive2 { name="rocbc"; version="0.2.0"; sha256="1zmnhih7d29bqly0jwdhsbk9z6dxvqm7r2ghzaf9w3xva8q0wapi"; depends=[clinfun mvtnorm pracma splancs]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; - rock = derive2 { name="rock"; version="0.5.5"; sha256="1c6g563fmm1anwhfnfiirlinrdzkb6z1c1zn4hr4c331wkyvihcm"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; rockchalk = derive2 { name="rockchalk"; version="1.8.157"; sha256="13g2rdnxazqfgy653d7vj6w79b2vgnd7bbz0sqn9k4qiig59jh41"; depends=[carData kutils lme4 MASS]; }; rocker = derive2 { name="rocker"; version="0.3.1"; sha256="15l6m8cmanw0av0c0wgn4m4ms6ablkj4hd0i9i9vq4003gafh9va"; depends=[DBI R6 sodium]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; @@ -15608,7 +15704,7 @@ in with self; { rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rodeo = derive2 { name="rodeo"; version="0.7.7"; sha256="1cfsf6sld72bm1343p6fzpfwq7a976basf3fg5fqsj2rcx6b1q7b"; depends=[deSolve R6]; }; rofanova = derive2 { name="rofanova"; version="1.0.0"; sha256="0w8c5c5q0s2qv1b4nxgf8y1z3g0l9c6jr6i0280b5mp9in9wn8a6"; depends=[abind fda_usc Rcpp RcppArmadillo robustbase]; }; - roger = derive2 { name="roger"; version="1.2-0"; sha256="0a61qfizg1xl0vw8z6hr3kxwxd2fn2762p90cpqrpnx7hpnk9v6n"; depends=[]; }; + roger = derive2 { name="roger"; version="1.3-1"; sha256="0zx2jm6x9ks6ynacwm552aiwz5sqh9nj95k96d11r417w7vd82ya"; depends=[]; }; roistats = derive2 { name="roistats"; version="0.1.1"; sha256="1278cap5il85s1qls3sc0f4gqq2hi80442qidnsc6d8r3l4ba3fr"; depends=[dplyr magrittr purrr rlang tidyr]; }; roll = derive2 { name="roll"; version="1.1.6"; sha256="1crzr0kqdls08n6i3769zrxbxvh2m4hv5k3xi6ky6ps8hhicwqc9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; rollRegres = derive2 { name="rollRegres"; version="0.1.4"; sha256="1q1xs43c860fqv5anfdv0zdb5s8n794yvhn1c7px1kdh2g0jbjp7"; depends=[checkmate Rcpp RcppArmadillo]; }; @@ -15618,7 +15714,7 @@ in with self; { rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; - rolog = derive2 { name="rolog"; version="0.9.4"; sha256="05a8wf2nkw3nssys9xbf40ihgbw4x6vjmzp2dcfsqxhr0wjmd7km"; depends=[Rcpp]; }; + rolog = derive2 { name="rolog"; version="0.9.6"; sha256="1j7pw9f0g2c6fvv8f7fsddfrmhkrxw8xa4k3byfqb2vdbygqndb1"; depends=[Rcpp rswipl]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; romic = derive2 { name="romic"; version="1.0.0"; sha256="08iqk71bn4yjxnbwj99jbrz3028jjs8f07ns9r9iaj6byyxv4vd1"; depends=[checkmate dplyr ggplot2 glue purrr readr reshape2 rlang shiny stringr tibble tidyr]; }; rootSolve = derive2 { name="rootSolve"; version="1.8.2.3"; sha256="182bb727sgqi5f3pzmw8jnn328wdjrgj9lfvg49gv8s22rjd3cxm"; depends=[]; }; @@ -15635,24 +15731,25 @@ in with self; { roptions = derive2 { name="roptions"; version="1.0.3"; sha256="1rcwzzyzaicvxh8zvqy9wgz5xsixgnizy9i4nh7l33zimm20lsdl"; depends=[ggplot2 plotly purrr]; }; rorcid = derive2 { name="rorcid"; version="0.7.0"; sha256="1d0s5w48ksyj152nc4xq5w0nsimab8jc5fgspdwnbas2g8a52igr"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorqual_morpho = derive2 { name="rorqual.morpho"; version="0.1.1"; sha256="1475yhb5qwj4zpsc4gqqpzs7qvyddxwc63i1f4rhnv6id2hi4msp"; depends=[dplyr magrittr]; }; + rosetta = derive2 { name="rosetta"; version="0.3.10"; sha256="0f7b60xj5kcb5dwjk194kr1hz3hbzzd61bqkg4wpjgwyiai75v8y"; depends=[car ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rmdpartials ufs viridis]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.2.6"; sha256="11nl3602f3wfccwayjd0a3kqs2lyfb09clccvhvalsp0di7ndbhh"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; - rotasym = derive2 { name="rotasym"; version="1.1.3"; sha256="1sknhvwmy1r0sa76lp8qv5h7lx05mvw04ip7cvxcamwg6l2bifis"; depends=[Rcpp RcppArmadillo]; }; + rotasym = derive2 { name="rotasym"; version="1.1.4"; sha256="08xprp6jmf91lvg3y6wh9mdrxpv0vv9aqynlch842294fy0wzgl1"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.6.4"; sha256="19d7filrgwm25cklbpjr082cn0h991xa5lvrijjl59whan4axjkg"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; rotl = derive2 { name="rotl"; version="3.0.14"; sha256="1kszmn0fnjfay7d53wmpn31nayahkhkccmakbl8mcv0f5h0yfalq"; depends=[ape curl httr jsonlite rentrez rlang rncl]; }; rotor = derive2 { name="rotor"; version="0.3.7"; sha256="02mzcwd94hykysz3cv0q3dlhbbd4k3rm1di7dcw6m4masgzy05zb"; depends=[dint R6]; }; - roughnet = derive2 { name="roughnet"; version="1.0.0"; sha256="063aibj0a906vmyk5qyah9z45dbvpxribvs856pgim0lr3y5fhzg"; depends=[graphlayouts htmlwidgets igraph jsonlite]; }; + roughnet = derive2 { name="roughnet"; version="1.0.1"; sha256="1brl1zwmmczbismgvbq2m1i1n1v85m410z2ap6r7jqxpfn111kis"; depends=[graphlayouts htmlwidgets igraph jsonlite]; }; roughsf = derive2 { name="roughsf"; version="1.0.0"; sha256="0am4yd168pss53p8869akx4bnw95d3k30fbv17pml8y9iriq6zs5"; depends=[htmlwidgets jsonlite sf]; }; round = derive2 { name="round"; version="0.20-0"; sha256="1c403i57fwfh3pz6ksg5ws2fydq8zf2fk4x6r9d0xqn0fs7px7j4"; depends=[]; }; roundhouse = derive2 { name="roundhouse"; version="0.0.2"; sha256="0xx2wai9pdq0g7x8xmwlf48wxv4v18c7ymzvzxpvw1gggppmbk69"; depends=[]; }; routr = derive2 { name="routr"; version="0.4.1"; sha256="0sqllafwxqlkf8bl5nc3fpf17aqg5nbimrmc8l3z95y3gwhnqhkb"; depends=[assertthat digest R6 reqres stringi uuid]; }; roxut = derive2 { name="roxut"; version="0.4.0"; sha256="1ciflhmavl24wk4kjbilmm70q6z8i02m36x4pyh4m3czhnpyyv03"; depends=[roxygen2]; }; - roxygen2 = derive2 { name="roxygen2"; version="7.2.1"; sha256="08fs5jw6npriqsr8pribs2yy1r8163xzcv4gmlgmcaywj4jk9w6j"; depends=[brew cli commonmark cpp11 desc digest knitr pkgload purrr R6 rlang stringi stringr withr xml2]; }; + roxygen2 = derive2 { name="roxygen2"; version="7.2.3"; sha256="1nhn0jhnxzlyqx0qnpd7k7q3azzngyn0j4zs8awmlmyjfywzli6q"; depends=[brew cli commonmark cpp11 desc knitr pkgload purrr R6 rlang stringi stringr withr xml2]; }; roxygen2md = derive2 { name="roxygen2md"; version="1.0.0"; sha256="1gvrfy0sk5qi8d93zxj5f7xgnnw0w38zyxdik4ckf0pkk0zdm27a"; depends=[desc devtools enc rex rlang tibble usethis withr]; }; roxytest = derive2 { name="roxytest"; version="0.0.1"; sha256="166m0pklgryh3vildg0bvzh9gs3p71sf61ivgkvkvyy9vhvnp3jf"; depends=[roxygen2]; }; - rpact = derive2 { name="rpact"; version="3.3.1"; sha256="152kmlw4q7jlhhp1xx3hamkyyflhsbxr1v3kb57x705v64h3qp54"; depends=[Rcpp]; }; + rpact = derive2 { name="rpact"; version="3.3.2"; sha256="1fpy36rr1zcbqxbnmzi154h9iws3xss14b3xrjzz6l1k7gralr65"; depends=[Rcpp]; }; rpanel = derive2 { name="rpanel"; version="1.1-5.1"; sha256="05cvazjwi66bm1fa3pfpl3p931i221y3y0am6iaf23gifsgl1ss2"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1.19"; sha256="0rcm4hk2k0ag9qmb0f933yqrq8jpnclwrzp6825swgsqnp83wwpy"; depends=[]; }; rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.2"; sha256="1v1arv5b02n0jvyifb5km9w3z3wxg9x9g3g4xck4s319z5g6lp7n"; depends=[Rcpp rpart]; }; @@ -15688,7 +15785,7 @@ in with self; { rqdatatable = derive2 { name="rqdatatable"; version="1.3.1"; sha256="1ml83gw9m9945qws2pi0x3bzm1jn4rh8n7zwivbir685hfprbhvn"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.9"; sha256="12m80vr2sxm2ivvd1a27jy6vh9xvk5z4irlkaxm1f0sxi462brra"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4.1"; sha256="0l5ndcpnd3ib83vwh5bs83nvjr4in3v2kbqq8q4y9x90nrxaz901"; depends=[arm coda magic MASS]; }; - rr2 = derive2 { name="rr2"; version="1.0.2"; sha256="099vjg91ni2bnxlra18pvgsvzrl28zrj639cdjrh3wkpqv99d04q"; depends=[ape lme4 Matrix nlme phylolm]; }; + rr2 = derive2 { name="rr2"; version="1.1.0"; sha256="1nbjai514zrv5j9w52x59inf9fqy0c7r1ijrr1d3xirkvk8c70mi"; depends=[ape lme4 Matrix nlme phylolm phyr]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6.1"; sha256="1ny48ra25rzx3k69pmzpd31ka2zhqyqiq1v7ann862j3ris0w8z9"; depends=[]; }; rrMixture = derive2 { name="rrMixture"; version="0.1-2"; sha256="0bh63v9zis8w3ylvbc99iy2hx0wn6302d49bhcw3wr7wmbzvdi8s"; depends=[gtools MASS Matrix matrixcalc Rcpp RcppArmadillo]; }; rrapply = derive2 { name="rrapply"; version="1.2.6"; sha256="05shia32hs6y739dfk35y671c8nrifhb415mn3sdg4v065j2k1jc"; depends=[]; }; @@ -15698,8 +15795,8 @@ in with self; { rrcovHD = derive2 { name="rrcovHD"; version="0.2-7"; sha256="1srxgw5qcgpmxqfplvbrlryxvkx0mic5y7v5lxgfvqvlmcb3rm3f"; depends=[pcaPP pls Rcpp robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.3.1"; sha256="1qnjriv1xq4gjjhzz8jxrbk88mw5xddl2l2i4bmfhnxhi51d2rk3"; depends=[ggplot2 knitr MASS Rcpp registry]; }; - rredlist = derive2 { name="rredlist"; version="0.7.0"; sha256="1w77cnfrybmqnadsmfkpjv5m49kkr7yc6kcqq165lmj3bijnprnj"; depends=[crul jsonlite]; }; - rrefine = derive2 { name="rrefine"; version="2.0.0"; sha256="1plv6ykhcpp8d111gkkh8zx9zjrkxqpvg6vcbcy2234yd6wd0wky"; depends=[httr jsonlite readr]; }; + rredlist = derive2 { name="rredlist"; version="0.7.1"; sha256="11dfad1r93b8q6jbn319lz9w7qbw7nqwxyck3fs1kp0il8vhr8cj"; depends=[crul jsonlite]; }; + rrefine = derive2 { name="rrefine"; version="2.1.0"; sha256="0zp0gs505rgrpnsfysk1fzm7x9jrvpigrqrpywfhjxfv8vb6hhyh"; depends=[httr jsonlite readr]; }; rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; }; rrepast = derive2 { name="rrepast"; version="0.8.0"; sha256="1x8xda9cndxri2hhd2ihxmjjy0x74r0dh3953dfh7gvj4slaf0rl"; depends=[digest doSNOW foreach ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; rres = derive2 { name="rres"; version="1.1"; sha256="138m26ya119805b1akwski0hf1ypiqsqjlkrm9p0l2x22zrv1n60"; depends=[kernlab Rcpp]; }; @@ -15712,7 +15809,7 @@ in with self; { rrtable = derive2 { name="rrtable"; version="0.3.0"; sha256="1y1hfscnw466azxk1c2kpa486xn8561zl5inv7yk5q8926ls2zc3"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.2"; sha256="0gi7igaymsikxx73dw3ak9pg2vhlvcz5xlbxz8clfxy1d66g58hd"; depends=[]; }; - rsample = derive2 { name="rsample"; version="1.1.0"; sha256="1iy61riwjch9z4m6k7whsrkl80sk9sww5lf1np4iq4vdfq6w01jb"; depends=[dplyr ellipsis furrr generics glue pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; + rsample = derive2 { name="rsample"; version="1.1.1"; sha256="1fmqfk1yihmh7lkszsf7pvn6zf67lpgff46hv2lpnfbssa3axllh"; depends=[dplyr furrr generics glue pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; rscc = derive2 { name="rscc"; version="0.2.1"; sha256="10srbalj8i67z30amvf08zfa4hs6phvq17kfgys9ihwaknckcyx3"; depends=[crayon formatR highlight igraph tm]; }; @@ -15732,7 +15829,7 @@ in with self; { rsimsum = derive2 { name="rsimsum"; version="0.11.3"; sha256="1pncp138ch69pb21lks8ziwhn2vhb5y812g2i9zfpdmfnprhg2d6"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; - rsleep = derive2 { name="rsleep"; version="1.0.4"; sha256="0rb9dpy1ks04mqb0aismkj0zg9sigyrbgb6j0rl9cw2npp0jz7vg"; depends=[edfReader ggplot2 jsonlite phonTools psd signal]; }; + rsleep = derive2 { name="rsleep"; version="1.0.5"; sha256="1lrjghj8i1q6b1hr97kfy35c75xzwlijcnzmp9wy129m9xygkk2r"; depends=[abind edfReader ggplot2 jsonlite phonTools psd signal]; }; rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.6.1"; sha256="19451icfh7snjbbmpzpr1hrdf52q8ijv0ag1di3y55r2la3jxxcf"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10.3"; sha256="1dcjsn3wa7rqdpixh37vjgk3z5siwlyn70qffp49m3awn258hwpg"; depends=[estimability]; }; @@ -15744,7 +15841,7 @@ in with self; { rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.5.1"; sha256="15kdllm2lh6xdlv4j0ljyj5pczhx26s9d8cac7953zbb0sd45chz"; depends=[data_table float lgr Matrix MatrixExtra Rcpp RcppArmadillo RhpcBLASctl]; }; rspiro = derive2 { name="rspiro"; version="0.2"; sha256="1gjil39ib9p86a7r3i03h01x2dsc9y283rnp65xvavrzmmgz87b4"; depends=[]; }; - rspm = derive2 { name="rspm"; version="0.2.2"; sha256="04m1sr57lhd37y7svygdpx1r7fvnkimk1gkg2p1jk0pm97v2rdbr"; depends=[]; }; + rspm = derive2 { name="rspm"; version="0.2.3"; sha256="0qfyk4ars77d6a7llbyvyc6095zb4690salgym8kgqlq8dzag3k2"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsprite2 = derive2 { name="rsprite2"; version="0.2.0"; sha256="1w043qjb959m5646fzpickzq2jxd1qc6mn3k9l0g76vmhzlqr0dy"; depends=[checkmate Rdpack]; }; rsq = derive2 { name="rsq"; version="2.5"; sha256="1r628srxhhf7b51lnj4qrzgbqajkm0ls47a9rzjkvmfq4ax5i73f"; depends=[Deriv lme4 MASS Matrix nlme]; }; @@ -15756,7 +15853,7 @@ in with self; { rstanarm = derive2 { name="rstanarm"; version="2.21.3"; sha256="19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; rstanemax = derive2 { name="rstanemax"; version="0.1.3"; sha256="0myxcqwpk4zq5y1ri14rbsbb19kr8g7fd3mfdsn8vh2yi5xlcqk1"; depends=[BH dplyr ggplot2 magrittr purrr Rcpp RcppEigen rstan rstantools StanHeaders tidyr]; }; rstantools = derive2 { name="rstantools"; version="2.2.0"; sha256="1dsfgi02hps878n3vimfdbzpm4gr5n3ccrmnc61ncrqcp6p0p0fb"; depends=[desc Rcpp RcppParallel]; }; - rstatix = derive2 { name="rstatix"; version="0.7.0"; sha256="0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; + rstatix = derive2 { name="rstatix"; version="0.7.1"; sha256="0c001w1mj8jw7gzmix90wzzb9kj45q173mzl7pmvykm77zpn61ak"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; }; @@ -15766,10 +15863,11 @@ in with self; { rstudioapi = derive2 { name="rstudioapi"; version="0.14"; sha256="1i5g9l2739mlaglzg98iifycx98jlzxj5933qfb8lwmdn63hk7a6"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="1.1"; sha256="16glxyv6aja7j0vfjccfi8w84wzm2ajfl62l0g5vpl73j7cs6gnk"; depends=[foreign rJava]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; - rsurveycto = derive2 { name="rsurveycto"; version="0.1.2"; sha256="1z51crs7xd0xfrpify3vrq0iwajh3ybg4wsyj602glaxjrj1yyrn"; depends=[checkmate cli curl data_table glue httr jsonlite rlang withr]; }; + rsurveycto = derive2 { name="rsurveycto"; version="0.1.4"; sha256="0716zzmfq3an83vij996cnbddmw28yvl1mmmha53f3xpvn109qyn"; depends=[checkmate cli curl data_table glue httr jsonlite rlang withr]; }; rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; - rsvg = derive2 { name="rsvg"; version="2.3.2"; sha256="1lx84x5dnxj1xdsidwfg9i6fkay7ldarwrbg0gl0f02wajf8ifsz"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="2.4.0"; sha256="1schf5gfqzvwmaigdsic5va9bbk9ycvcisiyll8xjjw116y9cxyb"; depends=[]; }; + rswipl = derive2 { name="rswipl"; version="8.5.20"; sha256="1qkaq2gnqq42h4f5rcmdmwlb4903fh5b73zrczf85xb4nrdq36sh"; depends=[Rcpp]; }; rsyncrosim = derive2 { name="rsyncrosim"; version="1.4.2"; sha256="15l1g71zq18b2j6dxwdbrcw8x2nkjgijr3zp906xx8g76p6n1hi6"; depends=[DBI gtools lifecycle raster RSQLite]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.4"; sha256="0bmi0qc535scdzrdr9sxnigby5ynw9dk95f99p55plc506z3pfya"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.2"; sha256="0sc9jiscabr72fsx1wwjvq44casvhdsinj77wrcp017a4f9i0k5b"; depends=[]; }; @@ -15796,9 +15894,10 @@ in with self; { rtkore = derive2 { name="rtkore"; version="1.6.7"; sha256="0v3p2amkkz137v1vqd1xiv9i1jayd265mwyajjzw56ngm8qpr4jv"; depends=[inline Rcpp]; }; rtmpt = derive2 { name="rtmpt"; version="1.0-0"; sha256="0a8q02vhjhm8l8y58kyyjadwm34ddlm5ayhgqmngkhl9f628s1gm"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; + rtoot = derive2 { name="rtoot"; version="0.2.0"; sha256="1ni9w17balj45p4h83imny4fcjbswspd5h8ii5vlk788jl4qbhmb"; depends=[clipr curl dplyr httr jsonlite tibble]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; rtrek = derive2 { name="rtrek"; version="0.3.3"; sha256="1lnjwslx1l0vgysw3m1s83h246grplmv4mdk4m6ym83mrdmkzvhi"; depends=[downloader dplyr ggplot2 jpeg jsonlite magrittr memoise purrr rvest tibble tidyr xml2]; }; - rtrend = derive2 { name="rtrend"; version="0.1.3"; sha256="0figwgxbb1ir7qc4f0138xgj6lry1v6jpq03dyfnp5xsqq3z22yg"; depends=[boot fftwtools ggplot2 magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; + rtrend = derive2 { name="rtrend"; version="0.1.4"; sha256="1l5vlqjxsgin0pjr4gfdf1ba0zapzjs7c4j4mrjpb8p4hvk3wgzz"; depends=[boot fftwtools lubridate magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; rtry = derive2 { name="rtry"; version="1.0.0"; sha256="1sac82z2jk5cp7cr3m6l07b6rk0ims0bsm3pvmk870v014brkim4"; depends=[curl data_table dplyr jsonlite tidyr]; }; @@ -15829,7 +15928,7 @@ in with self; { runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; - rust = derive2 { name="rust"; version="1.3.13"; sha256="0j17jcg16vdqzga8szg3fhkir9ls7mbbf1zqfp4nymwy3mkmvhm5"; depends=[Rcpp RcppArmadillo]; }; + rust = derive2 { name="rust"; version="1.4.0"; sha256="0np7kzvdpih6d2da2glbwwbfrz2r5ys3jzcz829im82nh8l9h4aw"; depends=[Rcpp RcppArmadillo]; }; ruta = derive2 { name="ruta"; version="1.1.0"; sha256="1qr2ryz55h2j3wlwg0535lhmk2ydm0idfxl07rlfxq1pi32cjms1"; depends=[keras purrr R_utils]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; @@ -15840,13 +15939,13 @@ in with self; { rversions = derive2 { name="rversions"; version="2.1.2"; sha256="0q5ip3rkhcxz7472fbqddrw3a2wm31b18w7ax0pi6wc27qiihn6y"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.8.2"; sha256="09lja7dd1rdln7cpd4rn4l3fynm223as3k295dcwf4x26gna7s9d"; depends=[crul dplyr ggplot2 jsonlite maps tibble]; }; rvest = derive2 { name="rvest"; version="1.0.3"; sha256="07hws9infwchy19smrcd9m6c0jii0bdn335yxqk3ramgj5ryyrd4"; depends=[cli glue httr lifecycle magrittr rlang selectr tibble withr xml2]; }; - rvg = derive2 { name="rvg"; version="0.2.5"; sha256="1i0alsr9ahl54gwszvaqz5qgiqs85wwzs5d31z97x315sk3n994j"; depends=[gdtools officer Rcpp rlang xml2]; }; + rvg = derive2 { name="rvg"; version="0.3.0"; sha256="14kihypdp571f5l9711hacxrv5bjp2wwxly9q6k0z9g28nlqakvd"; depends=[gdtools officer Rcpp rlang xml2]; }; rviewgraph = derive2 { name="rviewgraph"; version="1.4.1"; sha256="0j6g9qwxf4bzv9lr7fkgmk60cqid8kmck1x9kjf8il89qahbvsfs"; depends=[rJava]; }; - rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.2.1.2"; sha256="1bnrwxy05cvz1yjs7wpjbzmhl4b33x1y835irf7iczs4ckhk53lx"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.2.1.3"; sha256="0sn928ng4krllaskv900pxl9s13va79fyxr6n5l6i40qrlglmggr"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; rvkstat = derive2 { name="rvkstat"; version="3.2.0"; sha256="0nk6bx04jnm55k5323w1n4zg7qgds6c53fvdz329kqfsrmpj4wgq"; depends=[dplyr httr jsonlite lgr stringr tidyr]; }; rvmethod = derive2 { name="rvmethod"; version="0.1.2"; sha256="1g2d5pvz5s1sj2kalxaz7nb8874m4113ly809zbimngi1lhg8zi1"; depends=[assertthat locfit]; }; rwa = derive2 { name="rwa"; version="0.0.3"; sha256="11irb6ayr1a1rbmhc9zqwyb1vjfc0fq7imji0lfa30zplwgf1mqh"; depends=[dplyr ggplot2 magrittr tidyr]; }; - rwalkr = derive2 { name="rwalkr"; version="0.5.6"; sha256="11jd3gq0cm2kk8qlk372sj1a30qf4mic25q6jzjn9r68a5syxvpx"; depends=[dplyr hms httr progress tidyr]; }; + rwalkr = derive2 { name="rwalkr"; version="0.5.7"; sha256="1k17wdf4hgk5rii5jh6r5gl17n82zzx1mjfj8bb3n56lf7yr2zhm"; depends=[dplyr hms httr progress tidyr]; }; rwarrior = derive2 { name="rwarrior"; version="0.4.1"; sha256="1s92qy57n92qwlf51hr6v5k2gip5f9jz9q4kpgb3vjql6nykrp4v"; depends=[checkmate cli dplyr glue R6 stringr tibble]; }; rwavelet = derive2 { name="rwavelet"; version="0.4.1"; sha256="092c1h1xyyi2fwg99dgbn1b22cgf8mliizjpc2z7dnravznprr94"; depends=[signal]; }; rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; }; @@ -15861,10 +15960,10 @@ in with self; { rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; - rxode2 = derive2 { name="rxode2"; version="2.0.10"; sha256="143csj0kjss2mmmnnpnpbdfgbggjas2avd48ijdh97ckmva4wglk"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; + rxode2 = derive2 { name="rxode2"; version="2.0.11"; sha256="1z038b2p0laxlapwv8mrm9p960yggw9dyqny7da39qzmgj6lqa3z"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; rxode2et = derive2 { name="rxode2et"; version="2.0.9"; sha256="0ly6mz7xpfyl72vg7xihg874rsmgzn5xh4vf7c6bj660s2aqclnh"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; rxode2ll = derive2 { name="rxode2ll"; version="2.0.9"; sha256="03jb4cka3a98glz2yg4767q68ldrlhcaczayzp58x8i1snbg6d12"; depends=[BH checkmate Rcpp RcppEigen StanHeaders]; }; - rxode2parse = derive2 { name="rxode2parse"; version="2.0.12"; sha256="1yir8wjwhm7xahc47lbdach0695d25yfvwg59qk1lh32qbdp885j"; depends=[BH checkmate crayon dparser knitr qs Rcpp RcppEigen StanHeaders]; }; + rxode2parse = derive2 { name="rxode2parse"; version="2.0.13"; sha256="0bgvf4a99nhw5wjqzivsk55nyq5k82ibqh3qfs1pa4x90w83vsaz"; depends=[BH checkmate crayon dparser knitr qs Rcpp RcppEigen StanHeaders]; }; rxode2random = derive2 { name="rxode2random"; version="2.0.9"; sha256="073s12jbjczj2vwn4spbgxric5vx1737qr4955iiv3b819lbvfsi"; depends=[BH checkmate Rcpp RcppArmadillo rxode2parse sitmo]; }; rxylib = derive2 { name="rxylib"; version="0.2.8"; sha256="1zyzhlckmcnnyhw5y1sga3nz9i9rr1zg2s0f23693d1h26nqia2h"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; @@ -15873,7 +15972,7 @@ in with self; { rytstat = derive2 { name="rytstat"; version="0.3.0"; sha256="1shsc54ss9120ngl59pnd6kqclfh2ilva97xdsx58a9c2kry2dmm"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; rzmq = derive2 { name="rzmq"; version="0.9.8"; sha256="0lqwxi9ckydvrmmkwy3mhqd28gyajijznbbb4j23mnmi0aspwnl1"; depends=[]; }; - s2 = derive2 { name="s2"; version="1.1.0"; sha256="05n459rp5b1wk826sq3c5d2z1xwgkpfp8m1jnfshvs4gadlfkap3"; depends=[Rcpp wk]; }; + s2 = derive2 { name="s2"; version="1.1.1"; sha256="07c9f8ghfjqdjcw50by3y4j8nbsmmcwd4a3vpcwsxr4mvybckq0w"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-31"; sha256="0gnp703blgawfymd6nxz98w8g7sabagrnk3qc3d3cxj887w83gih"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="1.3.0"; sha256="0g60hby3rq4kpapiimjpyysfid9mr0fkvi4abmr5a5ch35fvazz7"; depends=[abind bigmemory ClimProjDiags easyNCDF easyVerification mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; @@ -15887,6 +15986,7 @@ in with self; { sFFLHD = derive2 { name="sFFLHD"; version="0.1.2"; sha256="014gy3nj6gr740z4apw82jh4n7s57zmnr95bm3g9xxnwnb224npq"; depends=[conf_design DoE_base R6]; }; sGBJ = derive2 { name="sGBJ"; version="0.1.0"; sha256="145mxfpl8gpycz8fl1ddlxy61rwpcqlfdrva6yhwzv4awwsv1fvn"; depends=[GBJ survival]; }; sGMRFmix = derive2 { name="sGMRFmix"; version="0.3.0"; sha256="183i3159k2cxpanm09zcy2y1vvjd6185gjjf81c3284prw3aky2c"; depends=[ggplot2 glasso mvtnorm tidyr zoo]; }; + sMSROC = derive2 { name="sMSROC"; version="0.1.0"; sha256="16fllr09mjxqwjm4rq9bc89bl1hz1kq6bs6m75qwwwm73j0xk40h"; depends=[flextable foreach ggplot2 icenReg plotROC RISCA rms survival thregI]; }; sNPLS = derive2 { name="sNPLS"; version="1.0.27"; sha256="0h05crdmwmzax4pwmyxb2z1dagyqb3kybpxc064y1kl8m84kcyvv"; depends=[clickR future future_apply ggplot2 ggrepel ks MASS Matrix pbapply]; }; sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; }; sRNAGenetic = derive2 { name="sRNAGenetic"; version="0.1.0"; sha256="1cvk40rkbxvr8jhwfqkgdfy150mi56y976pjp2w34rnghry6ql8z"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; @@ -15925,14 +16025,14 @@ in with self; { safedata = derive2 { name="safedata"; version="1.1.2"; sha256="0fcrx4qd52q5kwsbhnmy1n777fgbyrnl8s0xgsrfv99ws3qknnli"; depends=[chron curl httr igraph jsonlite readxl sf]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; - safestats = derive2 { name="safestats"; version="0.8.6"; sha256="1rn3hawh6jn8dszdjr80l15g83n52agch2j3znzb0jmg7qkxd383"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; + safestats = derive2 { name="safestats"; version="0.8.7"; sha256="1jxdnvmf6w8hgd5wcfjcmm796nchig1xizhngbzdgl85yi6nw1yy"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; safetyCharts = derive2 { name="safetyCharts"; version="0.3.0"; sha256="1riyd2rb799rr0j95s3wd45rwq8syfm0xllpihycpak0f56vg1s8"; depends=[dplyr DT forcats ggplot2 htmlwidgets huxtable jsonlite pharmaRTF plotly purrr RColorBrewer rlang shiny stringr Tendril Tplyr]; }; safetyData = derive2 { name="safetyData"; version="1.0.0"; sha256="1spa1wh1z8cqsz8vrkj3abny0xs3qp8d80dla8d031d70hvfkdjc"; depends=[]; }; safetyGraphics = derive2 { name="safetyGraphics"; version="2.1.0"; sha256="0vsyx9d157syz9qp8cnqgf2jgf4jkwyyi3mkf88zg51xl93dx19l"; depends=[datamods dplyr DT htmlwidgets jsonlite magrittr purrr rclipboard rlang safetyCharts safetyData shiny shinyjs sortable stringr tidyr yaml]; }; sageR = derive2 { name="sageR"; version="0.6.0"; sha256="0l8r1y62bjkkjw359dx6h9zd4a9pg90mimihp39vv552jchh7x6y"; depends=[ggplot2]; }; sahpm = derive2 { name="sahpm"; version="1.0.1"; sha256="1grhfxpqx9dyvqd2v91im3jgki2k3abcaal2ix9pcdzz93fc9xlw"; depends=[mvtnorm]; }; salesforcer = derive2 { name="salesforcer"; version="1.0.1"; sha256="19z4q5k0k1c1s2piqjg0z6nrwabap016nbx3jpf51lvmh5lp8ycf"; depends=[anytime base64enc curl data_table dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; - salso = derive2 { name="salso"; version="0.3.0"; sha256="05nsnhbb5w69064ddmdkpvx7nw2gbd2l446b89myllw0jzaycza3"; depends=[]; }; + salso = derive2 { name="salso"; version="0.3.27"; sha256="10b8hbd3kjdbh38qfnd3pg16z9fzs726ahm6d6ypg4hfjigpzhfg"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samc = derive2 { name="samc"; version="2.0.1"; sha256="1b9k5r8hbn6h7i72gib5dkb783a9yqxjrf2mflzgjp88jp79f1cc"; depends=[gdistance Matrix raster Rcpp RcppEigen RcppThread]; }; @@ -15956,7 +16056,7 @@ in with self; { sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; sandbox = derive2 { name="sandbox"; version="0.2.1"; sha256="0k86dgfjg7ib79cl6nwxv1g9i15pk501kd8ynlaj3mijpnhgvbal"; depends=[RLumModel]; }; sandwich = derive2 { name="sandwich"; version="3.0-2"; sha256="1d72vwxidsyac9mbyxrm06qds63rzcr82nn4c05466gbajsvcc3f"; depends=[zoo]; }; - sandwichr = derive2 { name="sandwichr"; version="1.0.1"; sha256="114k981kxkf3a8kvzaciimkksnh1g5cyj2ams278r09vi3ic59ia"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; + sandwichr = derive2 { name="sandwichr"; version="1.0.2"; sha256="16j4g42m808fb6w8mpb10hac3b0nn5aq12hp9xfgdhx49iai71dr"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; sanic = derive2 { name="sanic"; version="0.0.1"; sha256="05fd7jpi7cf9klfh6dqf8wklrjh5q1b3xqddxhdihcsqvcqhg48l"; depends=[Matrix Rcpp RcppEigen]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sanityTracker = derive2 { name="sanityTracker"; version="0.1.0"; sha256="0y041x840sg5c05ksljb1y4xag1cib19q5ygp443k13ryfbcgs9k"; depends=[checkmate data_table]; }; @@ -15965,7 +16065,7 @@ in with self; { sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; sansa = derive2 { name="sansa"; version="0.0.1"; sha256="1p5qv94f62dxzkbl1jn1fx3vksyhqqa3w2ipqwiflaxlk7q9k5pq"; depends=[data_table FNN ggplot2]; }; santaR = derive2 { name="santaR"; version="1.2.3"; sha256="0xyvfanqid5f114m7akhh0pi9mwy9bj8iqfzxpkkvj6ak1ib0i5y"; depends=[bslib doParallel DT foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny]; }; - santoku = derive2 { name="santoku"; version="0.8.0"; sha256="0xqbc1qbjnpd39z3ahvmpdqw14f0ym0l62gjc8fg8qissiwv0r1q"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; + santoku = derive2 { name="santoku"; version="0.9.0"; sha256="08pl03b94i3p3zza071ai62zb21rxs18vb0dscfrnyy383pxh5cy"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; @@ -15975,14 +16075,15 @@ in with self; { sarima = derive2 { name="sarima"; version="0.9.1"; sha256="0gj3z7471153g1cyclmkh9lcc2zqpv2d4yzq6k6hi2pxmb5hihsq"; depends=[Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.3.1"; sha256="1r20gmrzfgxhi9f4x9y5kclnyy6mr19jbga7fly1z501ch71n90i"; depends=[data_table xml2]; }; sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.2.1"; sha256="11c9wq7rr05jq6v6rcg3wy3h7w44clbxx2mysrqj50w38ih3r29b"; depends=[data_table dtw sarp_snowprofile]; }; + sarp_snowprofile_pyface = derive2 { name="sarp.snowprofile.pyface"; version="0.1.3"; sha256="0nnl4bdvvbn6wf3zhv7n710y8fn07rnsb2f9j9lkr5g9a52356bf"; depends=[data_table reticulate sarp_snowprofile]; }; sars = derive2 { name="sars"; version="1.3.5"; sha256="07jaagf3q8x4iwjh1avy5vzv9y62ipnjd43acbw0hizh983qlq3r"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.13"; sha256="0dfpqmvqjr2f7amqmms4wliccdlk37c53khrkb6z9dvhh88i4gzv"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.6"; sha256="13ybq0r5bza6pcih9876pmccggn5bm7mzmn071qs46sbbpq40kyk"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.9.2"; sha256="17c9l4v7rkyf65awvkdijz4lk101mclns122w4li63w5nhxckpyl"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.9.3"; sha256="1v5n0vm68fq683myfd105av11h7fw732f0n66kjmgxfkkgx3nqxy"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; - sass = derive2 { name="sass"; version="0.4.2"; sha256="0iln5ky6k1ix0gddlyw4rr2953kc499x66bcyi9yiyp91nfh82dl"; depends=[fs htmltools R6 rappdirs rlang]; }; - sassy = derive2 { name="sassy"; version="1.0.8"; sha256="0sswnif8jg4zlvs2r867pjz670q63p20w4mrxwr7x8f9m7ll7wv6"; depends=[common fmtr libr logr reporter]; }; + sass = derive2 { name="sass"; version="0.4.4"; sha256="0hk5svmpbhx9q3ni3qll2pa7q3pfc0zxv616kp62r6vakn1az16j"; depends=[fs htmltools R6 rappdirs rlang]; }; + sassy = derive2 { name="sassy"; version="1.1.0"; sha256="0iimj7wncdsx6h0fk4cg79dqbhyrlg76bl8jkz8rl2ac6ywdyz2p"; depends=[common fmtr libr logr reporter]; }; sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; satellite = derive2 { name="satellite"; version="1.0.4"; sha256="0z6wh0nmzxgizd8rzafkq8hkxx9s8lkaqins68697284lxvrbrwr"; depends=[plyr raster Rcpp terra]; }; satin = derive2 { name="satin"; version="1.1.0"; sha256="17knbgy89ljp607mkhs62fx9p6b40iqqzgpxr9karlf07l48c0ya"; depends=[geosphere maps ncdf4 PBSmapping sp splancs]; }; @@ -16001,12 +16102,12 @@ in with self; { sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; sbo = derive2 { name="sbo"; version="0.5.0"; sha256="00pnvpcl6441gf8npf6b6cvzxh0kq4qbfxggjiqdny6lq2nl0d47"; depends=[dplyr Rcpp rlang testthat tidyr]; }; sboost = derive2 { name="sboost"; version="0.1.2"; sha256="1vh3hk15chkyrkpnj4i40542bck9ny45g424bncxdxl9fgxc4nhk"; depends=[dplyr Rcpp rlang]; }; - sbtools = derive2 { name="sbtools"; version="1.1.20"; sha256="0kzdi3lynzk2ws975rgc6ijddyp24b6xgsz1g7nrg32462k9m5qj"; depends=[cli curl httr jsonlite mime]; }; + sbtools = derive2 { name="sbtools"; version="1.1.21"; sha256="1b52lq2xdwaz37jnnwi7lp151448g2gr2nykm32bdwbrxm68smx1"; depends=[cli curl httr jsonlite keyring mime]; }; sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; - scAnnotate = derive2 { name="scAnnotate"; version="0.0.4"; sha256="0fz3bchszykqjb6dr3vybxzrwia5lm5rb87hi1f2ajz9z8i8vlyc"; depends=[glmnet harmony MTPS Seurat]; }; + scAnnotate = derive2 { name="scAnnotate"; version="0.1.1"; sha256="05akid10d1h8636v5pic4kxn0dby3a864yjwbd5rv6zc4wxq1znr"; depends=[glmnet harmony MTPS Seurat]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; scCAN = derive2 { name="scCAN"; version="1.0.4"; sha256="1w509y629xpqd748k7rghv8plav0jyyigfcf3n2c1m2a6qhh338x"; depends=[FNN purrr scDHA]; }; - scCATCH = derive2 { name="scCATCH"; version="3.2"; sha256="1nc9z7q5za5p8h9705zzpmji05y8xynm9mc6s9w8h3dd52gpmc4w"; depends=[crayon Matrix progress reshape2]; }; + scCATCH = derive2 { name="scCATCH"; version="3.2.1"; sha256="00z1lqs04i251gkp9c4iih9hspkgw7jafj66gb6rj1ql6kqhkny1"; depends=[crayon Matrix progress reshape2]; }; scDHA = derive2 { name="scDHA"; version="1.2.0"; sha256="16vhfa2ja3bnkq86ls62ylkwks78n36qmrxzazyqih1n2n0z3ckm"; depends=[cluster clusterCrit coro doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; scDiffCom = derive2 { name="scDiffCom"; version="0.1.0"; sha256="1xgrsfrh06n8hzyqv3j99kjk6l85khg099vjdsf7kx9f5p92iixd"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; @@ -16018,7 +16119,6 @@ in with self; { scMappR = derive2 { name="scMappR"; version="1.0.9"; sha256="1b2jrbqy9dcvv9ng7mz8xxggqc5iy4n0h59xksin3m9gvpvsc0sw"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.3"; sha256="0wc7mif6q7li7qqsxc7s5s2jgg4ahwf348xzb5zpr2nhbcb5s4x6"; depends=[gamlss_dist Rcpp]; }; scOntoMatch = derive2 { name="scOntoMatch"; version="0.1.0"; sha256="16yw415jbzk28nq050b0xw0rhv35192vnm7ihhi1gpa69aqc0v9y"; depends=[ontologyIndex ontologyPlot purrr]; }; - scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; }; scPloidy = derive2 { name="scPloidy"; version="0.3.0"; sha256="0wbrpr6zwmhihbqsa5f4mfv05vx7v53bhgr4cx88k0p5jgzb6fs5"; depends=[dplyr GenomicRanges magrittr matrixStats mixtools rlang Rsamtools]; }; scRNAstat = derive2 { name="scRNAstat"; version="0.1.1"; sha256="0yv5np7jafmygg77bwisrha5y2rdb1va906ngzs4zc8mvxr0dvlm"; depends=[clustree dplyr ggplot2 magrittr Matrix patchwork Seurat stringr]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; @@ -16038,7 +16138,7 @@ in with self; { scam = derive2 { name="scam"; version="1.2-13"; sha256="0qp5g24zwb51x85z8g5x4n9wmqsf33hzwnahkj89rvl38lwq1z9k"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.55"; sha256="0vzd50dghmdvzp9bklb6sz6cf13am98v25d5jbn32nsm2wm65myj"; depends=[car kableExtra knitr magrittr mblm meta nlme readxl yaml]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.1.0"; sha256="1982xwnjs6xiqys385m5gn5a49xy2v3smd6ghw8814gx60bgw6w8"; depends=[dplyr ismev magrittr plyr Rcpp RcppArmadillo sets tibble tidyr]; }; - scapGNN = derive2 { name="scapGNN"; version="0.1.1"; sha256="1jhgjbxsaaxss5vca4znllf59rllbz0a5mhq4isj1asdjkv6zh0b"; depends=[ActivePathways AdaptGauss coop igraph mixtools reticulate]; }; + scapGNN = derive2 { name="scapGNN"; version="0.1.3"; sha256="15j0xqxyidlmgq0m66y59ppbi8vn1qxicrrm1dfybg2yn0vb0kcj"; depends=[ActivePathways AdaptGauss coop igraph mixtools reticulate]; }; scape = derive2 { name="scape"; version="2.3.3"; sha256="1jb5c335qsbrpsgngs8c1qlibyb7zvvx6mwydfhm1plx4pkcq0n1"; depends=[coda Hmisc lattice]; }; scapesClassification = derive2 { name="scapesClassification"; version="1.0.0"; sha256="0kwl9mbzcmn5qzqbzabf2igbhwbf5m1b1wa8rhm8mfv2qz7psyf2"; depends=[terra]; }; scar = derive2 { name="scar"; version="0.2-2"; sha256="0l2vm6aqi5lrc25akmn826v0zhygys9s167k9dphqn8l3yvlvqbj"; depends=[]; }; @@ -16054,15 +16154,16 @@ in with self; { sccore = derive2 { name="sccore"; version="1.0.2"; sha256="12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r"; depends=[dplyr ggplot2 ggrepel igraph irlba magrittr Matrix pbmcapply pROC Rcpp RcppArmadillo RcppEigen RcppProgress rlang scales tibble uwot withr]; }; sccr = derive2 { name="sccr"; version="2.1"; sha256="0cjlzv92b5qrs43d3ry33zcggiqvsqaf8wq4k19ws9lvgh59b62v"; depends=[dplyr]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; - scdhlm = derive2 { name="scdhlm"; version="0.6.0"; sha256="1x0z1yl8fmnnpm9h1nwlczbk2vnmqpq5sg5l6yn2z35j4wn458qz"; depends=[lmeInfo nlme readxl]; }; + scdhlm = derive2 { name="scdhlm"; version="0.7.0"; sha256="1sf8pgj4zq45lpv37c6h3gpp8qbmszwzlcr41bjki75mqbariksd"; depends=[dplyr lmeInfo magrittr nlme readxl rlang tidyselect]; }; + scellpam = derive2 { name="scellpam"; version="1.4"; sha256="1hhl3mikxbzvvw2xb3vhjw7gly503g2mnjblr9z257dgc6zgxflg"; depends=[cluster memuse Rcpp]; }; scgwr = derive2 { name="scgwr"; version="0.1.2-21"; sha256="15pwasxkwirr2wwf8w02cy8zx0bqavzyfixjz3m37c1llrhddpka"; depends=[dplyr FNN optimParallel sp spData]; }; schemr = derive2 { name="schemr"; version="0.1.0"; sha256="0w29la0mh5bvij52r8jgfl47cgm0xc53702ms5r4jv0pdd49qlg8"; depends=[apcluster dplyr ggplot2 magrittr OpenImageR purrr stringr]; }; - schoRsch = derive2 { name="schoRsch"; version="1.9.1"; sha256="0f823z48s50jhcphqqivchrmkiwqg25nc01c17kjpzzryd2fi5zs"; depends=[]; }; + schoRsch = derive2 { name="schoRsch"; version="1.10"; sha256="0bf4lahfzi6dchqfnykh4saiagcka12h82d9mvd1ddv5phmbyi10"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; scholar = derive2 { name="scholar"; version="0.2.4"; sha256="12r4j1s71szh77nsnqzsi0q5cvkp0cyr2fxzcagk02f42bnp5aww"; depends=[dplyr ggplot2 ggraph httr R_cache rlang rvest stringr tidygraph xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4.1"; sha256="16vd1in016sqxllxmkvs0bav9drk6lynrcqf9d24y77yhm103q76"; depends=[]; }; schrute = derive2 { name="schrute"; version="1.0.1"; sha256="14mjz63g2z4m4rgh7yf05gz5cjcriqvwgrd0an9xzj9pk36arisb"; depends=[magrittr]; }; - schtools = derive2 { name="schtools"; version="0.3.0"; sha256="0l601blj6c91nj79xvq1xv2yl038xrln350mykxfd9lp74fl1x3f"; depends=[dplyr formatR glue rlang stringr tidyr]; }; + schtools = derive2 { name="schtools"; version="0.3.1"; sha256="0d41zb546kf0yz958v486vbwymx2vn2jgpbqqghqly8hb9bfkg77"; depends=[dplyr formatR glue rlang stringr tidyr]; }; schumaker = derive2 { name="schumaker"; version="1.2.1"; sha256="15i39lzkd1qggd35sp39vy922y3y1n9drjkidz7asniv1miali6j"; depends=[]; }; sciRmdTheme = derive2 { name="sciRmdTheme"; version="0.1"; sha256="17pyvi38qg9r2yshw02car7d08qda6mscxkhh5jdm4ncc91y9i17"; depends=[]; }; scico = derive2 { name="scico"; version="1.3.1"; sha256="1f2czfhzdpi5dqjbxvbrrcnxjpylc5zzghj70ihlh2agq3n9hw5g"; depends=[scales]; }; @@ -16071,19 +16172,21 @@ in with self; { scifigure = derive2 { name="scifigure"; version="0.2"; sha256="1zc88r1lnb0cws130hq4rjc34rrp6zkmi8yhkwsm3vkznbhi4iba"; depends=[]; }; sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; scipub = derive2 { name="scipub"; version="1.2.2"; sha256="1k06pmpwpmgiglqhh9ca67m74vb961dczc9394xnwfszq9g3gz1n"; depends=[dplyr forcats gghalves ggplot2 purrr stringr tibble tidyr tidyselect]; }; + scistreer = derive2 { name="scistreer"; version="1.0.1"; sha256="1p8nga48lr87rdrkqcc6y4zgr85dc4cwqplyvp5s2i58jz5n296b"; depends=[ape dplyr ggplot2 ggtree igraph parallelDist patchwork phangorn Rcpp RcppArmadillo RcppParallel reshape2 RhpcBLASctl stringr tidygraph]; }; sclr = derive2 { name="sclr"; version="0.3.1"; sha256="10pihx35889w509ijbyq5hzslk9n7kakjnfscg7p0dq198nbpyca"; depends=[broom dplyr purrr rlang tibble]; }; scoper = derive2 { name="scoper"; version="1.2.1"; sha256="1f9bdw7w7zgbjhxxxpld8jss7kbr4k9ksxwzr94wzvapgg06v10p"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.4"; sha256="1zskhhbdgijkbh4jrvlfd46q4s8fyycqcgcx3lzyvi5xvv6h0sxg"; depends=[behavr curl data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.3.9"; sha256="0ljbxf73ab65mzrn2c9g1l5qvw1hgybr8syr806xnmxxb1ar7nqm"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; + scorecard = derive2 { name="scorecard"; version="0.4.0"; sha256="0s8z8aav71z70hfqqsg9fann4v3k508iij1l4wq8ng8jlpvjiswz"; depends=[cli data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="1.0.2"; sha256="16b9ibjyp2513hmwz63qbcsaddsvp7j894q4bn33dqhn7zxzdfrk"; depends=[knitr MASS Rcpp RcppArmadillo]; }; scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; + scoringfunctions = derive2 { name="scoringfunctions"; version="0.0.5"; sha256="140fz1zlx8841xnx4m74lkl7x18ysksqyikjxl60vwmaidbcfhhv"; depends=[]; }; scoringutils = derive2 { name="scoringutils"; version="1.0.1"; sha256="1fbppgjiv0qcypcnnrmyrilga5hdlq2l2iy3fq7i73h2y6a8p5r9"; depends=[data_table ggdist ggplot2 rlang scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; - scpi = derive2 { name="scpi"; version="2.0.0"; sha256="0an7hyrmiwz040sqdwyzs1m654rxr2jv6dl8jqczxmal7ya7jxhf"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; + scpi = derive2 { name="scpi"; version="2.0.1"; sha256="1msni5mfz8gkf9ff7c06w99p86l85v7in2kh73vnfzykw561x944"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; scpoisson = derive2 { name="scpoisson"; version="0.0.1"; sha256="0v8is1y9mqbvcvhqay1a0ycbhfxwxqkxifmbxb0sjzxg02mla65x"; depends=[broom dplyr ggplot2 glmpca magrittr Matrix matrixStats purrr Rdpack Seurat SeuratObject tidyr WGCNA]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; scquantum = derive2 { name="scquantum"; version="1.0.0"; sha256="0v263qxf3qp7hra3l8fyw8a625z9ym2h2zg5b9lsysdiznbi9bww"; depends=[]; }; @@ -16096,7 +16199,7 @@ in with self; { scrm = derive2 { name="scrm"; version="1.7.4-0"; sha256="1kn6f0ypkl50jvnxz9sc6nyb0cdcnaccgka984jfsniky16f6sn9"; depends=[Rcpp]; }; scrobbler = derive2 { name="scrobbler"; version="1.0.2"; sha256="14nnqcjrcc5xcdn2swwj0j2jsw5maayd9ba06s6d5i88png2xhv5"; depends=[httr jsonlite]; }; scrollrevealR = derive2 { name="scrollrevealR"; version="0.2.0"; sha256="0k8ffapwxpb25wphm76arma095hrh3wf0gpkx1z6g4rplahf4jxa"; depends=[glue htmltools]; }; - scrutiny = derive2 { name="scrutiny"; version="0.2.2"; sha256="0wz9zjfww6lgabsp6m9fvjrnf351srhdxa5cmih5lj9vy296nmk5"; depends=[cli dplyr glue magrittr purrr rlang stringr tibble]; }; + scrutiny = derive2 { name="scrutiny"; version="0.2.3"; sha256="13b257sl375rp2nzp2h2p1zlw7xcvxk59blnyn7pf9snmkncsi7j"; depends=[cli dplyr glue magrittr purrr rlang stringr tibble]; }; scrypt = derive2 { name="scrypt"; version="0.1.4"; sha256="12q9d4m7flbvlgssvjh1ga4jswkmqjfshf6pna6qk6v087gmzdsj"; depends=[Rcpp]; }; scryr = derive2 { name="scryr"; version="1.0.0"; sha256="040x2qvgrr8j5k3y2g24kngjys271radqhh3jsqi07dhg9bybr5q"; depends=[dplyr httr purrr tibble]; }; scs = derive2 { name="scs"; version="3.0-1"; sha256="04srf33zw4dxv22b1h5qwjch5yg7hrvk4iq8yvxqnbr8qzp1x26n"; depends=[]; }; @@ -16108,7 +16211,7 @@ in with self; { sda = derive2 { name="sda"; version="1.3.8"; sha256="14cpl7zj9aamdwyc8c9s7hnf660srvjv66lpnsm837d4r7k19icv"; depends=[corpcor entropy fdrtool]; }; sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; sdam = derive2 { name="sdam"; version="1.1.4"; sha256="0mqhg47z4knzcy1lxcd9fv8qk8ayszbl6sbxnmq5z0hx6wabkdf8"; depends=[grImport2 multiplex]; }; - sdamr = derive2 { name="sdamr"; version="0.1.0"; sha256="19mgdipp2fwv0c8g5fc02j4vdnc6v4x0204570swv8mkb2r2acqy"; depends=[car dplyr ggplot2]; }; + sdamr = derive2 { name="sdamr"; version="0.2.0"; sha256="1hcgdysa62mrzk2wmy366jpwab65m3qyi8bh7kzgifpwwxh5pv9k"; depends=[car dplyr ggplot2]; }; sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.3"; sha256="1nnvn8mfmymfx7f7vi9hdqp03vdhvngmik1jd4magnc6ghrpcdai"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; sdcLog = derive2 { name="sdcLog"; version="0.5.0"; sha256="0ssjgpfg3z8j9s47nmiw6a5jcsi4pppdxidvzm3sryjz4klallwg"; depends=[broom checkmate cli data_table mathjaxr]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.7.4"; sha256="1jy9i0akyrzvbividfac0ppgfndf6n190lgylja26b8fdlrwhdvy"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; @@ -16139,8 +16242,8 @@ in with self; { seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.5.7"; sha256="0vhsik8p8f3cvmlxq1ff3qh5jgzy5s0z6savrsmfb56vf3l5462p"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; - secrdesign = derive2 { name="secrdesign"; version="2.6.0"; sha256="0iaby8qpik6g5060m3cykrqslj8cl1ddg0hsqy6vjgy6gg9r6ach"; depends=[abind secr]; }; + secr = derive2 { name="secr"; version="4.5.8"; sha256="1kdl6lshd00zvfd77p66qqinb7qwxhaqkb38dpvpmr8xc75r82lg"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; + secrdesign = derive2 { name="secrdesign"; version="2.7.0"; sha256="0a0m78xf2avy4yx7zc8rmzjzai2pi4iy5bzh80yrc95s3m0nn24g"; depends=[BH kofnGA Rcpp RcppArmadillo secr sf]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.4"; sha256="1qa0vapnhiblz57jrbj9zd1gdmxc1nzzq41b4464373pjfvm5wvj"; depends=[igraph maptools MASS rgdal secr sp]; }; @@ -16148,7 +16251,7 @@ in with self; { secuTrialR = derive2 { name="secuTrialR"; version="1.0.9"; sha256="0g84jrh42kx3w1m6spw80rwx7vzjf7x1qabqap4h6ayrczacxq4r"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; sedproxy = derive2 { name="sedproxy"; version="0.7.3"; sha256="176wyi8jvk15r4k7hdax2ad37rsbhr54jlsj0y7p8ayhk1vd89am"; depends=[dplyr ggplot2 mvtnorm readr rlang shiny tidyr]; }; - see = derive2 { name="see"; version="0.7.3"; sha256="0k7r8pqmngbv389y5hcri27ld9ygkhfhxj185vfkcnnj63m1ff2z"; depends=[bayestestR datawizard effectsize ggplot2 insight parameters]; }; + see = derive2 { name="see"; version="0.7.4"; sha256="0772ahq11zzrwx8wwd7krg0a3phx28fli6gcs78rrwl8l2cl8y42"; depends=[bayestestR correlation datawizard effectsize ggplot2 insight modelbased parameters performance]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.1.0"; sha256="1ijxyys8pwlm99ynmv86cgn8pzz1ivaxzh3rq1akzv17nz93jv61"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.1"; sha256="01v8hwhw5pap69n11czn0ma22vakhi3kfbly0rzasw9fsvf66xhg"; depends=[CCA corpcor]; }; @@ -16166,7 +16269,7 @@ in with self; { segen = derive2 { name="segen"; version="1.1.0"; sha256="1l60rb1w0rfp1rv5favi4yxzyqs1nb1881mcz66xv789r3awhp11"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.6-0"; sha256="0sg59j59kz3zrwl3mi4ps1qw3hvwljygqa1d652vjdsx9w57zbvb"; depends=[MASS nlme]; }; + segmented = derive2 { name="segmented"; version="1.6-2"; sha256="0livckkhci3w1x9xai2m0a30fj06qsks2qds7y5jr9vwx03jqg21"; depends=[MASS nlme]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segmetric = derive2 { name="segmetric"; version="0.2.0"; sha256="1nirb5gnbs3vw74fmpapng0bqqwrz5a6c59apkg8s8x0vqxwhfvx"; depends=[magrittr sf units]; }; segregation = derive2 { name="segregation"; version="0.6.0"; sha256="0yajbbrbrkk6blb6r5y5fwvfz0j8kbc8fr91kb4f53j1afcbbhbx"; depends=[data_table]; }; @@ -16182,7 +16285,7 @@ in with self; { selectiongain = derive2 { name="selectiongain"; version="2.0.710"; sha256="0gbfzm1kzlc2lf1jfd0gxv8nlnm5bw6w7b55m48338lxb4zyhjcc"; depends=[mvtnorm]; }; selectiveInference = derive2 { name="selectiveInference"; version="1.2.5"; sha256="07kzpvdmflca1sriqfzn20f84fx2b9kwwiqm91lqjpx854bsx5kh"; depends=[adaptMCMC glmnet intervals MASS Rcpp survival]; }; selectr = derive2 { name="selectr"; version="0.4-2"; sha256="09y1n3iy297g49xlpl7xrjpwgnm57pskx5991lyfcpizbz8ax22m"; depends=[R6 stringr]; }; - selectspm = derive2 { name="selectspm"; version="0.4"; sha256="0yw5xwhv8kw3sizhq0r3wak8a32chkjil3lmxac8c6g9k47q8yrq"; depends=[ecespa spatstat spatstat_core spatstat_geom spatstat_random]; }; + selectspm = derive2 { name="selectspm"; version="0.5"; sha256="1qa2qnv6zwbxdbz78lgrmix7s1w1s91d9118nl8cdmj59k64x9q6"; depends=[ecespa spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; sem = derive2 { name="sem"; version="3.1-15"; sha256="05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md"; depends=[boot MASS mi]; }; @@ -16201,7 +16304,7 @@ in with self; { seminr = derive2 { name="seminr"; version="2.3.2"; sha256="1385wwh7b0fq4jqm6ragdywwafdidq4scbljzbdpvm3wis07abqv"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; semmcci = derive2 { name="semmcci"; version="1.0.3"; sha256="13p65d97j5b7nn9jrqx4bd2ih7ckrwq8nf2za7ci6lgjrlckx304"; depends=[lavaan]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; - semnar = derive2 { name="semnar"; version="0.8.0"; sha256="0njd0l02lnjr59p2pj14ckfdhlg36xxjs7kqg67ap74hqv2v5pja"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; + semnar = derive2 { name="semnar"; version="0.8.1"; sha256="18c509yh52sdmvm60p0kzyz86fmzi0by4gnb2jw8nppv8qlnz6zb"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; semnova = derive2 { name="semnova"; version="0.1-6"; sha256="1vghf8gy0vahwn3nq752wm0rbj33jdy69yqjzin94sk8xa42d0wi"; depends=[lavaan MASS Matrix]; }; semptools = derive2 { name="semptools"; version="0.2.9.6"; sha256="18dvlms719wqnlcdd0qa81ij1a1m3bq94qxn5jf7s2gm9bmvxd5l"; depends=[dplyr lavaan rlang]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; @@ -16209,9 +16312,9 @@ in with self; { semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; semverutils = derive2 { name="semverutils"; version="0.1.0"; sha256="0y3zh8n8bgs3ag8yy9cnp0i0xrn0iqflcbrya70glyb40148w9sw"; depends=[foreach R6]; }; sen2r = derive2 { name="sen2r"; version="1.5.3"; sha256="1gmrk8i6ri2k6w519259qwaa3k0jx73hm7s93dlaxvblkv3m9hzk"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML rgdal sf stars XML]; }; - sendgridr = derive2 { name="sendgridr"; version="0.5.1"; sha256="11lhiif6k40dxg0nj7hs4bi64yj5fq12ns8h009vnisa5fl9hq9d"; depends=[base64enc cli emayili httr jsonlite keyring magrittr usethis]; }; + sendgridr = derive2 { name="sendgridr"; version="0.6.1"; sha256="1lw17lhd3iwkp5mcbpwvwhlzgwk1nbz7xxic8fid8i22z1js22gc"; depends=[base64enc cli emayili httr jsonlite keyring magrittr usethis]; }; sendigR = derive2 { name="sendigR"; version="1.0.0"; sha256="0zc9hbxfvgb9dgmyqj5dsm2pcfykx6sk3wjcbxmpk7shyb34b6yl"; depends=[cicerone data_table DescTools dplyr DT ggplot2 haven Hmisc htmltools magrittr parsedate plotly readxl reticulate RSQLite shiny shinydashboard sjlabelled stringr xfun]; }; - sendmailR = derive2 { name="sendmailR"; version="1.2-1.1"; sha256="1dgxl6wnadlw5b3m4has5zalpk3pd5j70hfps92b9lbx4i7xbmr0"; depends=[base64enc]; }; + sendmailR = derive2 { name="sendmailR"; version="1.3-1"; sha256="1vxs9pdz1qbm7gzzigmvn5ybglakj4fska8dfj94azdvpkijs6hx"; depends=[base64enc]; }; sense = derive2 { name="sense"; version="1.0.0"; sha256="09idl88n6jlgbn5apgk0vr1bwmqi624ikv1qfx7hvyi79ixg49f4"; depends=[bbotk data_table forcats lubridate Metrics mlr3 mlr3filters mlr3learners mlr3pipelines mlr3tuning mlr3viz paradox purrr readr tictoc visNetwork]; }; sensemakr = derive2 { name="sensemakr"; version="0.1.4"; sha256="1bwc4m9fz250iyq5rl63ncgnb5f9490aas8gp51r7yljagq584va"; depends=[]; }; sensiPhy = derive2 { name="sensiPhy"; version="0.8.5"; sha256="1kjkdklva5wzmw071gbn1v9g5cf0wzmvwgy5y0dgi530v6byaw8j"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; @@ -16224,27 +16327,28 @@ in with self; { sensitivitymv = derive2 { name="sensitivitymv"; version="1.4.3"; sha256="1ga8mf92niiv1z3g3kv5ha5xdd1089aaqp19dz68kv8a396vhy1j"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="2.1"; sha256="1sjq8lxw9iy5s5a19xaxm05wnz9yg4llpbnljydini511pyshzzx"; depends=[]; }; sensmediation = derive2 { name="sensmediation"; version="0.3.0"; sha256="0pmhlc5aqz1vwl4fpn38nkqy63pbq6q62fk9xjja4khrq35zh9yb"; depends=[maxLik mvtnorm]; }; - sensobol = derive2 { name="sensobol"; version="1.1.1"; sha256="19jdjppp4hp917l6syd0964l7gvkh4p3rswznk0v17061l65kiz5"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; + sensobol = derive2 { name="sensobol"; version="1.1.3"; sha256="0i82zs7cxymic7b7g5q7glrbva25gd61fbhkw8qdp1incsmxxvhi"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; - sentencepiece = derive2 { name="sentencepiece"; version="0.2.1"; sha256="0mwmgnkmahlik8nl14pkzi351jv9c00iylj7f5h6wkjbrizkdd34"; depends=[Rcpp]; }; + sentencepiece = derive2 { name="sentencepiece"; version="0.2.3"; sha256="1cfk450asadp3bbv1px64kf62rdhfak2drnq4y913jjjq4radxwh"; depends=[Rcpp]; }; sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.1"; sha256="1wz34m5imzfwzf1ywidgb1xscsvf9nhri3w3wa2d8r7bk0nvlfjs"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; sentopics = derive2 { name="sentopics"; version="0.7.1"; sha256="0xbs2ha6xl37169a8qmbslia8blm87x981q8rcv8p8dvbazy7vbf"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.3"; sha256="0ggyr4asp86hvdp4bwdkljz9b2gzdxm2y9nbz2srlgh3m4hlz2cs"; depends=[foreign Hmisc MASS RColorBrewer]; }; + sepkoski = derive2 { name="sepkoski"; version="0.0.1"; sha256="1jx1ilbz7md501035vklk5bsw8krg8dn18pwkqynsacqy8wjwl2s"; depends=[]; }; seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.2"; sha256="10p8ldj83mvhpcz1yas4xns5qh8zbs533na8nv87phngi8dsb76m"; depends=[survival]; }; - seqHMM = derive2 { name="seqHMM"; version="1.2.1-1"; sha256="1gxrv0mhja0mqvm69s4mrvb31wxlk60v47a8vvhcrpa8l0b2kb4j"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; + seqHMM = derive2 { name="seqHMM"; version="1.2.3"; sha256="0pyr2a54g5709z57cw1hm33q06i3h0yhdinkxqiqf2a3jm7ih975"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; seqest = derive2 { name="seqest"; version="1.0.1"; sha256="06zk87n26305m0hy6lg7v3bpxmsqvinwkvw3dvmzkqp5jdkhwikb"; depends=[foreach geepack MASS mvtnorm nnet Rcpp RcppArmadillo VGAM]; }; seqgendiff = derive2 { name="seqgendiff"; version="1.2.3"; sha256="0vyrs4i3q3lyqx0b1as7h2rm3s5kbapq6jxzag8dwhf0ch7yz8gv"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; seqhandbook = derive2 { name="seqhandbook"; version="0.1.0"; sha256="0zncpjabazci92wzw126i491669gidkyiw7zjp7iw23m6jaf71l4"; depends=[TraMineR]; }; - seqimpute = derive2 { name="seqimpute"; version="1.7"; sha256="05bxxin46zf843fz5l1zspmq8agfp6xdy57d4ybmkzgdnf47hrw8"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; - seqinr = derive2 { name="seqinr"; version="4.2-16"; sha256="0cj07b7km5mla63qhbkxg1mnqq6vh79lsyyfpnbm29gw68w2bwy4"; depends=[ade4 segmented]; }; + seqimpute = derive2 { name="seqimpute"; version="1.8"; sha256="1vivs790zbwm8c7fwifz0nj0n9wzjmr8whz0f4pwp44gvcickxwn"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; + seqinr = derive2 { name="seqinr"; version="4.2-23"; sha256="14zv47cdrx9rpyxzccyikp0zxvcqrviw7bid0qhiixvji4bp88dg"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.5"; sha256="0h1vdsx88k3mpajfv0cgswk2s1560zm6y776b4dqrdkvkcgdbb3g"; depends=[Biostrings magrittr]; }; - seqminer = derive2 { name="seqminer"; version="8.4"; sha256="1mbx1hw9dhgry7hhan43g6aiz2lyd5api7wxq3fwajyzjrc6p1g8"; depends=[]; }; + seqminer = derive2 { name="seqminer"; version="8.5"; sha256="1ki8b4bgb3ky9y3x2g56h7i94lk345awgwkg10lys022jxhm30d7"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; @@ -16257,7 +16361,7 @@ in with self; { serpstatr = derive2 { name="serpstatr"; version="0.2.0"; sha256="1l7hj4npnggmg6fsk5lydg6vrad791hvmv9rhx7yb0nsa1pzi155"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; - servr = derive2 { name="servr"; version="0.24"; sha256="11x0857m3xzdbzr4z0vx4fcdk36arfagyf2qgamvprich0qisknr"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.25"; sha256="0g77lpyfjaibcpqb3z723z1p82msjdnc74f2n5l740z91560vbp6"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.2.2"; sha256="1jy7n37qnrb4fgzmn8s8yf7kv29yw27x8zklwf8qdb2kgj2q6qpm"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; @@ -16266,20 +16370,19 @@ in with self; { setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; - sf = derive2 { name="sf"; version="1.0-8"; sha256="0cl7m47ar3iw95rpwpmjl23frdbscxa15q39mlzmwswxwy871p1x"; depends=[classInt DBI magrittr Rcpp s2 units]; }; + sf = derive2 { name="sf"; version="1.0-9"; sha256="0fq1v2ksnllyd5yx7ch8f298aqiys4v6xacswy0h4xb418dcgh45"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfaR = derive2 { name="sfaR"; version="0.1.1"; sha256="1j8ans7lhssq64crp2fwfbl6n09h7zl7y6s8zwkdmxgvydvh9n22"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; - sfdep = derive2 { name="sfdep"; version="0.2.0"; sha256="04arbp8n1vpl5kksc0893vv8qh81m2mhb8fwk55r6y7zb6wpphwk"; depends=[cli rlang sf spdep]; }; sfheaders = derive2 { name="sfheaders"; version="0.4.0"; sha256="0ig02nszrs6fkjkrkqibp23n4a8qr4i09yz7l741yjd0308ddg46"; depends=[geometries Rcpp]; }; sfhotspot = derive2 { name="sfhotspot"; version="0.7.0"; sha256="1j3588zj5z9d82ci3vrwz22gaq47lrkkl5fqqys50i46z4jazcn9"; depends=[ggplot2 rlang sf SpatialKDE spdep tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfnetworks = derive2 { name="sfnetworks"; version="0.6.1"; sha256="1klfsp49q6ysbam8f8w3x60y2zml0hmlz1rbskw8s8gc1jaicjgq"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.1"; sha256="0ja0kyrr6vqwk9fj1hq9bvfkak2vgav0hlqpgn4sa9h9j1s8r4js"; depends=[]; }; - sfsmisc = derive2 { name="sfsmisc"; version="1.1-13"; sha256="0622yf4fl1b1zm988dfwdrhq7pg0rllhm8wz1pqdmp72glsi05x8"; depends=[]; }; + sfsmisc = derive2 { name="sfsmisc"; version="1.1-14"; sha256="1vxkziprndrzc5sdz36i20qdqfcyw8m87vpxm3jccf6pqbc45adw"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; sftime = derive2 { name="sftime"; version="0.2-0"; sha256="1ymi60ag8kqb3293bdcvb83zwsgrz000ylifjvlpzzmh1xsisanq"; depends=[sf]; }; sftrack = derive2 { name="sftrack"; version="0.5.3"; sha256="1dj21n7iqv334va40p4v3rxh87qbpwgq0062f67kpa3jd16xzkmk"; depends=[sf]; }; @@ -16299,7 +16402,7 @@ in with self; { sgolay = derive2 { name="sgolay"; version="1.0.2"; sha256="04hbgwx92k4gncdgyglv7kdxc28qhs7ap868z2rvw89hd96ai6fx"; depends=[signal]; }; sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; sgr = derive2 { name="sgr"; version="1.3.1"; sha256="0m7rl3yii6zz4p21aiaifj1ram6gi6x5kywpyx9yjan79180q8h7"; depends=[MASS]; }; - sgsR = derive2 { name="sgsR"; version="1.3.1"; sha256="0n02j918xy2a7nfslrgbnza0dlm4xcg3x6j9v4cbxkd4f7a5hw2p"; depends=[BalancedSampling clhs dplyr ggplot2 SamplingBigData sf spatstat_geom terra tidyr]; }; + sgsR = derive2 { name="sgsR"; version="1.3.2"; sha256="13k2h5mxnci977yx1fav9kknrqfbq4bnw2204bcpdkrp8nf0j0rh"; depends=[BalancedSampling clhs dplyr ggplot2 SamplingBigData sf spatstat_geom terra tidyr]; }; sgstar = derive2 { name="sgstar"; version="0.1.2"; sha256="0b3bw10lf5h4kgg3c0s3lxsafaffhn8gc9kxmg7bg35lbxv0r1vn"; depends=[dplyr ggplot2 tidyr]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="1.4.0"; sha256="1zg95sjhrfvbdlfc387g9p0vnb8nb6agdk1mb3wq3kwkm2da0bqj"; depends=[]; }; @@ -16309,22 +16412,24 @@ in with self; { shallot = derive2 { name="shallot"; version="0.4.10"; sha256="05ciafpahcrsh9kwg1yqwbmanvkbv1i1cjjpvq3w4cdqkhn4fam7"; depends=[commonsMath rscala]; }; shape = derive2 { name="shape"; version="1.4.6"; sha256="0yqbrrx2ywmfl99s6d1n6jblc63k1mxbiqyv8y0kq8jws1g3w45r"; depends=[]; }; shapeNA = derive2 { name="shapeNA"; version="0.0.2"; sha256="1ivp8kvnacr2fx3rs7ckzdpinb6bifzzw7riskzj95lygjlkvabw"; depends=[]; }; + shapeR = derive2 { name="shapeR"; version="1.0-1"; sha256="02al1g9ycfb63mcx4s16abniggl825ihjanx6silbpv6dn6g1ms8"; depends=[jpeg MASS pixmap plotrix vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7.2"; sha256="03sdcxbah05x0j6cpygx3ivkzrdlz2c0frxi30cinb05q6a41yjb"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.6"; sha256="1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"; depends=[MASS minpack_lm rgl scatterplot3d]; }; shapper = derive2 { name="shapper"; version="0.1.3"; sha256="1jaj9j894md45611gdrz05n0kfakawf7vlcc3zxhwdh3f7kwz4lp"; depends=[DALEX ggplot2 reticulate]; }; shapr = derive2 { name="shapr"; version="0.2.0"; sha256="1zzg58m38rkqsynczy5jwz97ph3s85aa975ffi4i5vml82zlhc4y"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; - shapviz = derive2 { name="shapviz"; version="0.2.2"; sha256="0avsj51fm42xd9wnp8qlprgs9f7dzh7ni33r453igw9w06ff850s"; depends=[ggbeeswarm ggfittext gggenes ggplot2 ggrepel rlang xgboost]; }; - shar = derive2 { name="shar"; version="2.0.0"; sha256="1zg7hh72inqdz39ddrnsc5ddh5qk5qwr3prb17p9jfa80apyp5px"; depends=[classInt spatstat_core spatstat_geom spatstat_random terra]; }; - sharp = derive2 { name="sharp"; version="1.2.0"; sha256="113z21rxa57q527sbfivhdfdgdd0zdbrfcb8x6jpbzrz232n0lyr"; depends=[fake glassoFast glmnet huge igraph MASS mclust Rdpack withr]; }; + shapviz = derive2 { name="shapviz"; version="0.4.0"; sha256="0pprjqm33ydm0sshgxcafwd3g0lms24ix7nha1h7pkj6d1nimh40"; depends=[ggfittext gggenes ggplot2 ggrepel rlang xgboost]; }; + shar = derive2 { name="shar"; version="2.0.2"; sha256="0xny1nxmlc4cjn3g0sk2ykwr3ijksadrnmr272d73wypakjfs6is"; depends=[classInt spatstat_explore spatstat_geom spatstat_model spatstat_random terra]; }; + sharp = derive2 { name="sharp"; version="1.2.1"; sha256="0f7zavv0pk5nm81208cgxhmamp6vbpmwinv26mxwpaf7w9j5a2sk"; depends=[beepr fake glassoFast glmnet igraph mclust Rdpack withr]; }; sharpData = derive2 { name="sharpData"; version="1.4"; sha256="1pnza52wqczjds4vp2fy9ky41y7lyj9ywam11nsr0mpv63jglnc5"; depends=[KernSmooth quadprog]; }; sharpPen = derive2 { name="sharpPen"; version="1.8"; sha256="11pvah41gi3xhb1n30k8ql28m3f47nnsd37z3mcjs0pv1lbacps2"; depends=[glmnet KernSmooth MASS Matrix np]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.3"; sha256="0ndqckz7pi099yynzfwzcbz9jcz93bb9jcd2a4px2sjbagfmx7ag"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; - sharpshootR = derive2 { name="sharpshootR"; version="1.11"; sha256="1z1w4ci76d3yasdxhsspn7ybypcigmvzcfm5m12nfjl3441zp9zh"; depends=[ape aqp circular cluster curl digest e1071 Hmisc lattice plyr RColorBrewer reshape2 scales soilDB sp stringi vegan]; }; + sharpshootR = derive2 { name="sharpshootR"; version="1.12"; sha256="1jilrpnqmmxmz4w7508s5gb8yyggprr3pxm1xh8xq8zgdwh75i3j"; depends=[ape aqp circular cluster curl digest e1071 Hmisc lattice plyr RColorBrewer reshape2 scales soilDB sp stringi vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; shattering = derive2 { name="shattering"; version="1.0.7"; sha256="0dmb57pdgzwm001gfm1zm8ba7x71bp2vjk4ml0cy4r05hpdswfh3"; depends=[e1071 FNN NMF pdist pracma rmarkdown Ryacas slam]; }; shazam = derive2 { name="shazam"; version="1.1.2"; sha256="08zz5sr8vpnibpi6n3s16grcl0vhg2gw27p79h9mkqvz1d5hy7ql"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators KernSmooth lazyeval MASS progress rlang scales seqinr stringi tidyr tidyselect]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; + sherlock = derive2 { name="sherlock"; version="0.5.1"; sha256="0r6abbkh84ds189lmhn3n8r7lmfa5jz47zm0niz67liymahg8i3n"; depends=[cowplot dplyr forcats ggh4x ggplot2 magrittr openxlsx plotly readr rlang scales stringr]; }; shidashi = derive2 { name="shidashi"; version="0.1.4"; sha256="1pp0vbwb3j5dvwf6n6ny7hgwb1c90vz2inrg8s92332bn5d0jlmi"; depends=[digest fastmap formatR httr jsonlite shiny yaml]; }; shiftR = derive2 { name="shiftR"; version="1.5"; sha256="18y2qzqx8hd6yph1wnsq4ygm16pcdszynh174xsrxrhvx2h9mi4x"; depends=[]; }; shinipsum = derive2 { name="shinipsum"; version="0.1.0"; sha256="0d94189hmg0bl8x0s8fpba5gcvb95sr9k9lbp3kk8482fc5h147n"; depends=[attempt DT dygraphs ggplot2 magrittr plotly]; }; @@ -16345,13 +16450,14 @@ in with self; { shinyCohortBuilder = derive2 { name="shinyCohortBuilder"; version="0.1"; sha256="0hwfaw0j7c2m071q5s9ddmn73dqvm4m443pkr20y2i83872wcvxj"; depends=[bslib cohortBuilder dplyr ggiraph ggplot2 glue highr htmltools jsonlite magrittr purrr rlang shiny shinyGizmo shinyWidgets tibble tryCatchLog]; }; shinyCyJS = derive2 { name="shinyCyJS"; version="0.0.11"; sha256="1wvrv5hdr74d2a68iwy76ffawmy4mpw0swrngw41zqpjd6hjiyxd"; depends=[htmlwidgets]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; + shinyDatetimePickers = derive2 { name="shinyDatetimePickers"; version="1.0.0"; sha256="1a19jll6dips6gca363byyf97aidbishnb3jynylgm9ys8va6rap"; depends=[htmltools lubridate reactR shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.3"; sha256="11kjq0vw5c98lzrg80m9w917lkgw5im2h9wgk1b84vlaxrjy2wja"; depends=[fs htmltools jsonlite shiny tibble]; }; shinyGizmo = derive2 { name="shinyGizmo"; version="0.2"; sha256="0z4f2z6czijyjlysn2i1fx4bf8996pqv2ldabycak37hgqhb9bbc"; depends=[glue htmltools htmlwidgets magrittr purrr shiny shinyWidgets]; }; shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.8"; sha256="1czyz51k0xm62b9bzcsygslm2nd3fnmll4wjxwimlngy00rnjnng"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; - shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.0"; sha256="0bz4gf14xay7qc10x6zbgky9sviyic8r89igq25mvdnn47990ml6"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; + shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.2"; sha256="1d0rij3zi9bs5ziwfplq4k1689ibqwlr9zq3v0np2j2kkfbh63gf"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; shinyKnobs = derive2 { name="shinyKnobs"; version="0.1.3"; sha256="1rxlvq4vr87krf7d6mpx0y53hyz8q1jnx6nv7mlhc1ck13q6fgac"; depends=[htmltools shiny]; }; @@ -16359,7 +16465,7 @@ in with self; { shinyML = derive2 { name="shinyML"; version="1.0.1"; sha256="086iavycv1gd6scfsixf7cmw0s5a4dc6x5cylfasxrzgiixd76c9"; depends=[argonDash argonR data_table dplyr DT dygraphs ggplot2 h2o lubridate plotly shiny shinycssloaders shinyjs shinyWidgets sparklyr tidyr]; }; shinyMatrix = derive2 { name="shinyMatrix"; version="0.6.0"; sha256="17v7gg5bli6x3w063id804859m6g07i9ksbm2jyb65489pjgpadk"; depends=[jsonlite shiny]; }; shinyMergely = derive2 { name="shinyMergely"; version="0.2.0"; sha256="1rvv5lcbb17i263xx1zn9524iwpmw56xwh0b2qii8096l20w6cnd"; depends=[shiny]; }; - shinyMobile = derive2 { name="shinyMobile"; version="0.9.1"; sha256="1v3qs6s3k7s1rnliv06ljx06cgkw154xbl0c1aiv9jjqq16rxh01"; depends=[htmltools httr jsonlite magrittr shiny]; }; + shinyMobile = derive2 { name="shinyMobile"; version="1.0.0"; sha256="0wwmcirnmdwz43900c8x93ycbrypx40xqvm2hpafmkzlljav47fb"; depends=[gplots htmltools httr jsonlite magrittr shiny]; }; shinyMolBio = derive2 { name="shinyMolBio"; version="0.2"; sha256="09lq5pvis450il1agcq5n9cilnq84rfv08w2dz1d0bbq1qgrgnvg"; depends=[checkmate dplyr plotly purrr RColorBrewer RDML shiny stringr whisker]; }; shinyMonacoEditor = derive2 { name="shinyMonacoEditor"; version="1.1.0"; sha256="12inzz9vrxi1465l82fafjva198qxyzwailx1s0fm58cqzhnqxr6"; depends=[shiny]; }; shinyNORRRM = derive2 { name="shinyNORRRM"; version="0.8.6"; sha256="1cb6n3bwqfygqc0p25z62nmrrns6hm2by4chi45sl898is5hkhdn"; depends=[pracma shiny shinythemes shinyWidgets Ternary]; }; @@ -16369,14 +16475,14 @@ in with self; { shinyRadioMatrix = derive2 { name="shinyRadioMatrix"; version="0.2.1"; sha256="195b1990r3b91f4i4azai0i4lxjgw2ngbzdywiy35c1fnmiyy882"; depends=[shiny]; }; shinySIR = derive2 { name="shinySIR"; version="0.1.2"; sha256="1g2xcm0n7chswrnw9zq3wz6mimzzf6avhkp1rcd24ga809346jcd"; depends=[deSolve dplyr ggplot2 shiny tidyr]; }; shinySearchbar = derive2 { name="shinySearchbar"; version="1.0.0"; sha256="1v80380vym31aw0i1ghwlbdi2xkf3n59w2as62ywqi79025x3w6y"; depends=[jsonlite shiny]; }; - shinySelect = derive2 { name="shinySelect"; version="1.2.0"; sha256="0m43082nl81qm7cnm4wklm6g9y4wxpjg6k5pk9ac89zgmsbffjsj"; depends=[fontawesome htmltools reactR]; }; + shinySelect = derive2 { name="shinySelect"; version="1.3.0"; sha256="16fnqhw2kd7mamhc4qnravrybbi2fbxkdmdpk07ycnasn00fprp0"; depends=[fontawesome htmltools reactR]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; - shinyStorePlus = derive2 { name="shinyStorePlus"; version="0.6"; sha256="1j9ilkgr7ar4hdv2lwsvai53s9l7p2scy32qjd0y7d8irayqwrmv"; depends=[htmltools jsonlite shiny]; }; + shinyStorePlus = derive2 { name="shinyStorePlus"; version="0.8"; sha256="0brvqv63wyalkzyacn51s2n4ny5m04y4vykl03v1hrxngg7rdrgs"; depends=[htmltools jsonlite shiny]; }; shinyTempSignal = derive2 { name="shinyTempSignal"; version="0.0.3"; sha256="0lw59hy3hc6h6262bsfk1yz3zqfjfzc8f6smyq0f7yk5vkkiw359"; depends=[ape Cairo config DescTools forecast ggplot2 ggprism ggpubr ggtree golem shiny shinydashboard shinyjs stringr treeio]; }; shinyTime = derive2 { name="shinyTime"; version="1.0.3"; sha256="04vpq9fpp1iwila9l33cljig3hfyw7lsg03fqny0q260ka8chhgz"; depends=[htmltools shiny]; }; shinyToastify = derive2 { name="shinyToastify"; version="2.0.0"; sha256="0ipqwgl89pjiycwg78p0db45lbzry989kn6aqjsf79lpvghnk5qs"; depends=[fontawesome htmltools reactR shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.7"; sha256="0jfx2capckv7hf2yx3fn8i4rcmhi222ah91jnmhg497x8wgz31s3"; depends=[htmlwidgets jsonlite promises shiny stringr]; }; - shinyWidgets = derive2 { name="shinyWidgets"; version="0.7.4"; sha256="09cjbiv8cp4ipl2q3l4cr2vbbf1shn3mx5d80ipgklihc92lnp03"; depends=[anytime bslib htmltools jsonlite rlang sass shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.7.5"; sha256="1ls28r6dbvi4pml1mxakn327dzl0l71pkaw5rm9n80jd5npq9vmz"; depends=[anytime bslib htmltools jsonlite rlang sass shiny]; }; shinyXYpad = derive2 { name="shinyXYpad"; version="0.2.0"; sha256="08acqbh41379p2jh0wc30m4h7rlx81cf578qc604jxnsvilvjr9n"; depends=[shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="3.0.0"; sha256="1gws8vshnqngm55rnw22qjlqsn9d240p734dnjvsv96d22b8bsnl"; depends=[htmltools knitr shiny uuid]; }; @@ -16390,7 +16496,7 @@ in with self; { shinydashboard = derive2 { name="shinydashboard"; version="0.7.2"; sha256="0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5"; depends=[htmltools promises shiny]; }; shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="2.0.3"; sha256="10sdb1vddx2ij867pqijr63l4233hw1vnn7mzbs0z23g77x8ra29"; depends=[fresh htmltools lifecycle shiny shinydashboard waiter]; }; shinydisconnect = derive2 { name="shinydisconnect"; version="0.1.0"; sha256="14m83y1iv7qvs1hilc0d18q46qnsciflypgm4dsj7vlvh7ilpdvm"; depends=[checkmate glue htmltools shiny]; }; - shinydlplot = derive2 { name="shinydlplot"; version="0.1.3"; sha256="1mvhx8f5800d33vl9kgs5mib003aqshb8vgfy9h4qlgxyx35zssk"; depends=[htmltools htmlwidgets plotly shiny shinyBS shinyjs]; }; + shinydlplot = derive2 { name="shinydlplot"; version="0.1.4"; sha256="1gxr98p2zyvwa6q8a80bz4h1pkgbdn58cwqbd19dbn4liszfxsy8"; depends=[htmltools htmlwidgets plotly shiny shinyBS shinyjs]; }; shinydrive = derive2 { name="shinydrive"; version="0.1.3"; sha256="16yfc9grmjzkpl6xzqn5rpkqd2qnlj4qdgia8img794l6j0y8dgp"; depends=[DT htmltools knitr R_utils shiny yaml]; }; shinyfilter = derive2 { name="shinyfilter"; version="0.1.1"; sha256="00n1l2jzzviz0f2gialj4zc6xfymzqi99raqhmlm0x9fbj1syfga"; depends=[reactable shiny shinyBS shinyjs stringr]; }; shinyfullscreen = derive2 { name="shinyfullscreen"; version="1.1.0"; sha256="0wx3jhma27701k4cmmls46rfvnix5zylxf09wdn7h6v3zdwvicq8"; depends=[jsonlite shiny]; }; @@ -16399,7 +16505,7 @@ in with self; { shinyhttr = derive2 { name="shinyhttr"; version="1.1.0"; sha256="1snrl7bg1bc5jxqs1c5a2ir6qnf1nq576aigk19k0ms4gb9hh66m"; depends=[httr shinyWidgets]; }; shinyjqui = derive2 { name="shinyjqui"; version="0.4.1"; sha256="135gwz7syyb6pbn0lkvmq0v1c6r1zivavnqhi1rnzbbzlysi27v1"; depends=[htmltools htmlwidgets jsonlite rlang shiny]; }; shinyjs = derive2 { name="shinyjs"; version="2.1.0"; sha256="1id9gsrkr28xl80a8794in17rxmmz06zqvd5hlns7mqz3fzhrhky"; depends=[digest jsonlite shiny]; }; - shinylight = derive2 { name="shinylight"; version="1.0.0"; sha256="1z03gqq57j4j3g8k41zhfbfsvfxd7rfciw1mfh87wqsz621y00xm"; depends=[httpuv jsonlite later]; }; + shinylight = derive2 { name="shinylight"; version="1.1.2"; sha256="0y2gmi8y5b595dca1sch9mzhq2mbbj7mv879md0ajc16ycfi17rp"; depends=[httpuv jsonlite later]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.1.0"; sha256="0684p9anbc3qdn4rqkxp33nm0d04zb264b3blwa23pa5akis2klq"; depends=[curl dplyr ggplot2 httpuv jsonlite magrittr R6 rlang scales stringr svglite vroom websocket xml2]; }; shinylogs = derive2 { name="shinylogs"; version="0.2.1"; sha256="1w19z0zw2k3ni7ckg04q7j0jx4k3cm490z0qccj1smq01wn3czjj"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.410"; sha256="0nl672dgwj34wm4i3pxk28lv6qw9xsgg3hm0h78q3zdgk8a33kdn"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite scrypt shiny]; }; @@ -16425,6 +16531,7 @@ in with self; { shinyvalidate = derive2 { name="shinyvalidate"; version="0.1.2"; sha256="0mps6a1rkadbxf11lcxx4njfwbgpzyx63wndhlwb0dzyz5d02la7"; depends=[glue htmltools rlang shiny]; }; shipunov = derive2 { name="shipunov"; version="1.17"; sha256="15gakqapgi9yl9i31nqw1h6p89qphmlyn9dfhmf2ps3ki4ijq44k"; depends=[PBSmapping]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; + shopifyadsR = derive2 { name="shopifyadsR"; version="0.1.0"; sha256="0vd8md4w4v05l9d5v7kx21kw3rkbkx8iqf4da44x95kfnnxiqjcx"; depends=[jsonlite]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; shorts = derive2 { name="shorts"; version="2.3.0"; sha256="0vhgbj4q4fgz607yzw264s0r9kmmjxyah0siw2qf4pdimjvb9l7i"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; @@ -16434,7 +16541,7 @@ in with self; { showtextdb = derive2 { name="showtextdb"; version="3.0"; sha256="0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.2"; sha256="0d80a0qqrsb9ybzqvg3m6a9r16ky7hqchq0hjvj8ipk430mmxdjm"; depends=[MASS mfp rms survival]; }; - shrinkDSM = derive2 { name="shrinkDSM"; version="0.1.0"; sha256="01yvs1shsp7npfm9w1caprb1x8w42zlzswc2fk9y6q340i51kfzm"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; + shrinkDSM = derive2 { name="shrinkDSM"; version="0.2.0"; sha256="0vl3cl9njl0irz9hsli7xkf49jawkywww91j5gxlmz5vdrxnwz9c"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.6"; sha256="1p9s4n3dw95ghcma71ik5zidqk54cbsd30csnbqp2w377241lxd3"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; shroomDK = derive2 { name="shroomDK"; version="0.1.1"; sha256="1w1zhrr2jygys2slnnlmdh7py6rfs485nhdr3h9r964daggxb42q"; depends=[httr jsonlite]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; @@ -16453,7 +16560,7 @@ in with self; { sigInt = derive2 { name="sigInt"; version="0.2.0"; sha256="1y3qbfsynssam05q4947zqd0dkrpcnq5pla409i3xy511wv9702d"; depends=[Formula MASS maxLik pbivnorm randomForest stringr xtable]; }; sigclust = derive2 { name="sigclust"; version="1.1.0.1"; sha256="1q3jdalm7cbsl78gssl3jsifh56wyczrlx2ya4p74r4fb6sv9kga"; depends=[]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.1.8"; sha256="0scc56xdv1mqz7jskyd46apqpggl0bgm0xs03q65r7x3rylb3fm8"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.1.9"; sha256="1pyvyn41xfvdsaij5qz70jr1b04s9kqzg8nx0ifqakdlpg82hbx9"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="1.4.0"; sha256="067ygikaaniikig1ypd6ry187981xar7i539917zf0avszshisxq"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; @@ -16463,6 +16570,7 @@ in with self; { signs = derive2 { name="signs"; version="0.1.2"; sha256="0dzf5pydvs93rvj6idw9l2asv1bxwz20df7qis2db84hfww2kc6m"; depends=[rlang scales]; }; sigora = derive2 { name="sigora"; version="3.1.1"; sha256="11abbvynyhbb7y7zndbkivb13yxj8l86nrn361mfv495g1d3ba8s"; depends=[slam]; }; sigr = derive2 { name="sigr"; version="1.1.4"; sha256="1gx1dmdi8wjqlhp7a9cp915z0n5hl9xsv2hwzdmk0ijbjgipn7fh"; depends=[wrapr]; }; + siie = derive2 { name="siie"; version="0.3.0"; sha256="0xqhi8xbfccm09iwsnxva4idwk50hm4z8skyhbbj4727c71117h1"; depends=[data_table]; }; siland = derive2 { name="siland"; version="2.0.5"; sha256="1896zlfzps35mvhzbd4invpdp39cxhs13lklx56k35l4v2zvh24g"; depends=[fasterize ggforce ggplot2 lme4 raster reshape2 sf sp]; }; silicate = derive2 { name="silicate"; version="0.7.0"; sha256="1x8l6wvymx3scwzym9h6b5wgprjinzp6m2cs6r7xn9aqcr39499a"; depends=[crsmeta decido dplyr gibble gridBase magrittr purrr rlang tibble unjoin]; }; sim1000G = derive2 { name="sim1000G"; version="1.40"; sha256="1avq6xfc34izavvp9vb5ccc2b9nc4m7cwr06ygnsmpgwi5nswbb8"; depends=[hapsim MASS readr stringr]; }; @@ -16476,10 +16584,10 @@ in with self; { simITS = derive2 { name="simITS"; version="0.1.1"; sha256="0b62lvknfqli6ki4w360b1ih9nsm6pinaqskgra6vl2nzsim3sal"; depends=[dplyr rlang]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.42"; sha256="0nxs3n64mh1sbnbmqbj7hm8d43z0cja8da9yhsygl60r1jyl98xd"; depends=[mvna survival]; }; - simMetric = derive2 { name="simMetric"; version="0.1.0"; sha256="070va0k6inhpvzvg6zakf1w92r0547c4xhlm9vx8k2rqz1snlsd4"; depends=[assertthat dplyr purrr]; }; + simMetric = derive2 { name="simMetric"; version="0.1.1"; sha256="09jpjlvmvb9z2v71n8cb14b0zfi78k609c7xvs78rghdiswqfv23"; depends=[assertthat dplyr]; }; simPATHy = derive2 { name="simPATHy"; version="0.6"; sha256="0xiqcrdnn7pcbhykkjabfym6hqq9hrnjigav8nshs143s9wflw1q"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; simPH = derive2 { name="simPH"; version="1.3.13"; sha256="086060f78f1dmpa6cyhx160blchckplw04gs6997f1hwzswci2l2"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; - simPop = derive2 { name="simPop"; version="2.1.1"; sha256="0klhn5w908dl4djnddja8lfrzsk92b244vv68afp502dak7g7f95"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet party ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; + simPop = derive2 { name="simPop"; version="2.1.2"; sha256="0x66i2k9s16lsjm79sjszkqa1j9nzwdnbb19lpgxbf1fcdwm5lrh"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet party ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; simTargetCov = derive2 { name="simTargetCov"; version="1.0.1"; sha256="0gdqqwg9i2hga6l4s5x7wbbsm20b3sgwrci1g6hc04x1h9aawiw2"; depends=[MASS]; }; simTool = derive2 { name="simTool"; version="1.1.7"; sha256="0q093dlfj23zq3w4schn1ycff79vgzr2s3wgbz2qz4s3b7fddk70"; depends=[dplyr purrr tibble tidyr vctrs]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; @@ -16499,7 +16607,7 @@ in with self; { simglm = derive2 { name="simglm"; version="0.8.9"; sha256="0spvr8bmdqg97y1qklr8c6svgwsdwa5haar4sbsnvpnrq5fb2baw"; depends=[broom dplyr future_apply purrr rlang]; }; simgof = derive2 { name="simgof"; version="1.0.2"; sha256="05d7im59i193f266kqy4lr37dw3v20j9niizhj9w8z1qlfqfqsrk"; depends=[ddst]; }; simhelpers = derive2 { name="simhelpers"; version="0.1.2"; sha256="0ykv03nz7133af0yc7a3j67bpqjch4jkp8szlhy68pbwgin5zm1z"; depends=[dplyr furrr magrittr Rdpack rlang rstudioapi tibble tidyr]; }; - simlandr = derive2 { name="simlandr"; version="0.2.1"; sha256="0f2jrmkx5w76hvyhsz1i9762z8xqa7mlqnph21fb65218izqwg7n"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang scales tibble]; }; + simlandr = derive2 { name="simlandr"; version="0.3.0"; sha256="04nl58qayvx1pkhscqy0664dvb6jg54amf43pff81gxsvk7gs20l"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang tibble]; }; simmer = derive2 { name="simmer"; version="4.4.5"; sha256="1szyz6j7jd1i6yqw627828fk0ji3s58rqjrb38gy5h54skn7w167"; depends=[BH codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.17"; sha256="15bg7y21kgzvgzwzxpdwq9pay92ms2dkg9a1lpqlg5dx892rfr7n"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; @@ -16524,6 +16632,7 @@ in with self; { simplevis = derive2 { name="simplevis"; version="6.4.0"; sha256="1rf6bvdxsvp5ydvmrf2przrx851jr0yih45mbj189dykwvp377cm"; depends=[dplyr forcats ggplot2 htmlwidgets leafem leaflet leafpop lubridate magrittr plotly purrr rlang santoku scales sf shiny snakecase stars stringr tidyr tidyselect viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; + simplifyNet = derive2 { name="simplifyNet"; version="0.0.1"; sha256="04iv1alkd85lwwyf8k6iwsj9fbxl6smsjm2b34z91za70n0rsw5q"; depends=[dplyr igraph Matrix sanic]; }; simpr = derive2 { name="simpr"; version="0.2.2"; sha256="19gc6fxjw4fxz9swf27qf2z5d2mwgcdcg2dyfyvvx3rkzn51bwia"; depends=[broom dplyr furrr generics magrittr purrr rlang tibble tidyr tidyselect]; }; simputation = derive2 { name="simputation"; version="0.2.8"; sha256="02l7j2s74mjd4vgly4nnf2w7as9m3m6qifa292r29iaw12l0zj81"; depends=[glmnet gower MASS missForest norm randomForest rpart VIM]; }; simr = derive2 { name="simr"; version="1.0.6"; sha256="1q8ip54c5pc7pjf8127jpk56nr3f8rmwqdcrr84faj4lfbr27wqb"; depends=[binom car iterators lme4 lmerTest pbkrtest plotrix plyr RLRsim stringr]; }; @@ -16563,23 +16672,24 @@ in with self; { sistec = derive2 { name="sistec"; version="0.2.0"; sha256="0y43anin9vybiivf3jrxg19i9z4smmhhjvp52gci6icpn839kr8x"; depends=[dplyr openxlsx rlang shiny stringi stringr]; }; sistmr = derive2 { name="sistmr"; version="0.1.1"; sha256="08kajkb0ypbzcyxs9wv6mdz51r7zj01k2ahskidhlqww80rd407r"; depends=[BlandAltmanLeh dplyr ggbeeswarm ggplot2 ggrepel rlang scales]; }; sitar = derive2 { name="sitar"; version="1.3.0"; sha256="0lhwbbpq6anqrk3818xw3nrl63bj3vwgsmxad0dpl8y50rkcc4cs"; depends=[dplyr forcats ggplot2 glue magrittr nlme purrr rlang rsample tibble tidyr]; }; + sitepickR = derive2 { name="sitepickR"; version="0.0.1"; sha256="1cqvf4d2jpav53v7h7vzknm8cbr5kqk1djqkhmjrwv2zjnx3fg97"; depends=[data_table dplyr ggplot2 magrittr MatchIt reshape2 sampling scales stringr tidyr tidyselect]; }; siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-13"; sha256="0v0qbzdgh1lcg7m6b5vzfwy74hvj1b61c49lq8c4az740sf34sx6"; depends=[data_table ggplot2]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; - sits = derive2 { name="sits"; version="1.1.0"; sha256="0nmkw2yhqgzp882mmk8dlic7i6g0bf0bc5n4zp8rl280gm1bm581"; depends=[data_table dplyr gdalUtilities ggplot2 lubridate magrittr purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; + sits = derive2 { name="sits"; version="1.2.0"; sha256="056wlrd5hfmmc6lslg6f7hwiwpl8xm2gagkf26fvsk1y0wfgs0ss"; depends=[data_table dplyr gdalUtilities lubridate magrittr purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.8.11"; sha256="05iimcf1if1cx9bmsjb6f5gcq58hjiw10vx7kqd4nqnyhzcvy8yr"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; + sjPlot = derive2 { name="sjPlot"; version="2.8.12"; sha256="0g6r4p1r70jjzw74177kxcx2br2n206jwlqazw0vxcsbffb8a411"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjSDM = derive2 { name="sjSDM"; version="1.0.3"; sha256="0jj0rah158sjqrcnji5qc5kghf8m74frky7mqpagcxd15fh5bvz3"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; sjlabelled = derive2 { name="sjlabelled"; version="1.2.0"; sha256="1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k"; depends=[datawizard insight]; }; sjmisc = derive2 { name="sjmisc"; version="2.8.9"; sha256="1gzkq95ckxr0vhrzggflzli9hs7zr8c0yym9zn1wf74yrr0mgc3q"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; - sjstats = derive2 { name="sjstats"; version="0.18.1"; sha256="1cv80yjnyh6qihxf57zivihhia20gibr5f03x8aspy6382wnwlka"; depends=[bayestestR broom dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.18.2"; sha256="0a1y6bqyvgs0avzasr8g6vwcxcnj4d9g0rfz2qiznwadpjzqw66h"; depends=[bayestestR broom datawizard dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; sjtable2df = derive2 { name="sjtable2df"; version="0.0.2"; sha256="10h24yaikm8l3kkkj6yv430ybmgz0ydvxlv3smyyv5ww0c9qzmp1"; depends=[data_table kableExtra magrittr rlang rvest xml2]; }; skater = derive2 { name="skater"; version="0.1.1"; sha256="0cylcwxqc75a7fkyn7llwp0c7k35sfsbylxrjn0cpdnxbyf5xcx5"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; - skedastic = derive2 { name="skedastic"; version="1.0.4"; sha256="07i9sgqc96h9ih8r1n9fvryyw8znpap1bpmvbm62sm3qcj7m856p"; depends=[arrangements bazar boot broom CompQuadForm cubature data_table expm gmp MASS mvtnorm pracma quantreg Rdpack Rmpfr]; }; + skedastic = derive2 { name="skedastic"; version="2.0.1"; sha256="0faj5lv6axpg8ra5pa49j9ha41cmxynhf6fc7dn5ym2g0f497k9l"; depends=[bazar broom caret CompQuadForm inflection MASS Matrix mgcv osqp pracma quadprog quadprogXT Rdpack Rfast ROI ROI_plugin_qpoases slam]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.19"; sha256="0dq5llbjnvpgzwwp14fqddmmrw6lsis23g21lx4glwmh23j4m1qp"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny V8]; }; @@ -16597,6 +16707,7 @@ in with self; { skmeans = derive2 { name="skmeans"; version="0.2-14"; sha256="1kkp9zdwk1k3q50xp8g0jqgg3x1qzgigfkg37bpac7542276vsqq"; depends=[clue cluster slam]; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; skpr = derive2 { name="skpr"; version="1.1.6"; sha256="1fbdg44jrrjfm49c0k8s6xi556q2fzy2pmbfma1vmggnx6d917wi"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; + skylight = derive2 { name="skylight"; version="1.1"; sha256="06snpj5jdr5wzv87587izvkxnxn24xl11jm7l2x2sj6s6rw16p9w"; depends=[]; }; skynet = derive2 { name="skynet"; version="1.4.3"; sha256="08a5p3rk0qhsxawdxj5sfw07rdk56x6viy37w1b0hxqaxxxv239i"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps RCurl stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.2.0"; sha256="10klljhkycnyqkzq73gj71c2phdqx9l3lb2jzancc59x21wjqn3b"; depends=[cachem dplyr ggplot2 httr jsonlite magrittr memoise rlang tibble withr]; }; @@ -16611,9 +16722,9 @@ in with self; { sleev = derive2 { name="sleev"; version="1.0.2"; sha256="13ws39qy8h5g3fjsj056g7cnxgb7z97i2isagfyw9rykf4jkaqsv"; depends=[Rcpp RcppArmadillo RcppEigen]; }; slendr = derive2 { name="slendr"; version="0.4.0"; sha256="05r01fylzaz23akc874cfpzlfszdicsfssb2nrhn5pci753bschh"; depends=[ape dplyr gganimate ggplot2 ijtiff magrittr png purrr readr reticulate rnaturalearth sf shiny shinyWidgets stars tidyr]; }; slfm = derive2 { name="slfm"; version="1.0.1"; sha256="0s7fdvr4fvsb4789f9ly2x820g4xvabl04wk7k6i8pd5ckj2xjhy"; depends=[coda lattice Rcpp RcppArmadillo]; }; - slgf = derive2 { name="slgf"; version="0.1.0"; sha256="0wjj9mbf33x5isi5h3mdas283aw9x2hi5hyqgqbi941vhwf6v31l"; depends=[numDeriv Rdpack]; }; + slgf = derive2 { name="slgf"; version="2.0.0"; sha256="07gkl35hq3w42kw103gn9f15s0z4n49nq39ip1nzm3s6d1ad6in6"; depends=[numDeriv Rdpack]; }; slickR = derive2 { name="slickR"; version="0.5.0"; sha256="1zxj6ivdhi9wvqcrl0p8clwk8nxqmg1bijqamp0lhq82dpyrdngp"; depends=[base64enc htmltools htmlwidgets lifecycle xml2]; }; - slider = derive2 { name="slider"; version="0.2.2"; sha256="1vxk2bc33svwcki2j8zr5jcxswh27i0fqgzjw2a5a1pp9dh3fmd3"; depends=[ellipsis glue rlang vctrs warp]; }; + slider = derive2 { name="slider"; version="0.3.0"; sha256="18gw0bxpbb00qcafmyv2avyj83s710hrj10x998ch9qbbyx1fsmw"; depends=[cli rlang vctrs warp]; }; slideview = derive2 { name="slideview"; version="0.2.0"; sha256="031ahdqswl14sw0nxmhaam37g14cifb83dyp2zjz1mh6qpkzl2gs"; depends=[htmltools htmlwidgets lattice raster viridisLite]; }; slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; }; slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; @@ -16628,7 +16739,7 @@ in with self; { sm = derive2 { name="sm"; version="2.2-5.7.1"; sha256="0mql7rlm8wkdwmx1lv7pscdk9ibvsdpfdv8bpaz1hv2gn4pc637a"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.3-1"; sha256="13qf495glfz6r75kfdplr1x6fqmys961pzbgv96lw62lby5d2qgp"; depends=[]; }; smacof = derive2 { name="smacof"; version="2.1-5"; sha256="1i9a3637m943sw6s0hx2b99kny0sv8niywqi9l12pjxx9flnj0zv"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; - smacpod = derive2 { name="smacpod"; version="2.4.1"; sha256="08khvvmskgdcdkyil6bvk47z347690407wfb4fpczwxhzkjx14f2"; depends=[abind pbapply plotrix smerc sp spatstat_core spatstat_geom spatstat_random]; }; + smacpod = derive2 { name="smacpod"; version="2.5"; sha256="0br9ahix3q2qv06aj8jr2828ysj0waik6za42ahd9b8hv7chrhad"; depends=[abind pbapply plotrix smerc sp spatstat_explore spatstat_geom spatstat_random]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; smallstuff = derive2 { name="smallstuff"; version="1.0.1"; sha256="0zqwxmazk4nb8sgwwkymaap3l9pfzw3mqbmfzvj0wn7wzjsx10cx"; depends=[class data_table igraph matlib Matrix pryr ROCR]; }; smam = derive2 { name="smam"; version="0.6.0"; sha256="1vgsx1n9gkkjnv5lrrznpfqvh019qcjki6gy625k3ykqg5zg229v"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; @@ -16639,7 +16750,7 @@ in with self; { smartsnp = derive2 { name="smartsnp"; version="1.1.0"; sha256="1gzzhys6bja55iclkji254kri6r3iamiw7bv881mp615wi9r3hx2"; depends=[bootSVD data_table foreach Rcpp RcppArmadillo Rfast RSpectra vegan vroom]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; smbinning = derive2 { name="smbinning"; version="0.9"; sha256="1sr0nsqqzxdf402g9qx1ycigbh330idl9n2cyli4x4zxj1nqm3yv"; depends=[Formula gsubfn partykit sqldf]; }; - smcfcs = derive2 { name="smcfcs"; version="1.7.0"; sha256="10barbr4869ispdg8as6j8gfcc683dxv249vqlpk0p1cv3mvy6nj"; depends=[abind brglm2 checkmate MASS rlang survival VGAM]; }; + smcfcs = derive2 { name="smcfcs"; version="1.7.1"; sha256="1i57rgibm5fqdw8gk61f79mvz60ygzgbfsb2nyckfxiamy25nfq2"; depends=[abind brglm2 checkmate MASS rlang survival VGAM]; }; smcure = derive2 { name="smcure"; version="2.1"; sha256="0377dj6wvny2y44phsf7177ivn70a55v316skwf02n03ghqx73k9"; depends=[survival]; }; smd = derive2 { name="smd"; version="0.6.6"; sha256="1nvlka2prqh1hcj4ngpj2c2gmfryziijqwjyfy9fmq78skiq0jij"; depends=[MASS]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; @@ -16650,7 +16761,7 @@ in with self; { smidm = derive2 { name="smidm"; version="1.0"; sha256="1a26y70mb5qzl1zjaicvnb8i7z3r94qqzda2cpac776h1w35zy51"; depends=[dplyr extraDistr]; }; smile = derive2 { name="smile"; version="1.0.4.1"; sha256="0781rzkqwpqnl22phxdcf533p55pshfp4v01k8d1bhd5yvr13y7k"; depends=[Matrix mvtnorm numDeriv Rcpp RcppArmadillo sf]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; - smlmkalman = derive2 { name="smlmkalman"; version="0.1.0"; sha256="1kxy2nfiz5d33cp2baxfxxqb64jfrkjyp6rhiablqw448y6xlszp"; depends=[pracma scales spdep truncnorm]; }; + smlmkalman = derive2 { name="smlmkalman"; version="0.1.1"; sha256="1ns717rq0vipplh3l2ypinrscv3bjv86j68aw53ygs6g59h0v2vp"; depends=[pracma scales spdep truncnorm]; }; smmR = derive2 { name="smmR"; version="1.0.3"; sha256="0b6w2k5j65jdngc871ch9ragr7qgwbkl4nhk3gqnbpvkr9m4x88f"; depends=[DiscreteWeibull Rcpp RcppArmadillo seqinr]; }; smnet = derive2 { name="smnet"; version="2.1.2"; sha256="17zv02f1g86s55g81anhqrxfgy2biamsw606byxwh9kdc5l4vfv6"; depends=[RSQLite spam SSN]; }; smog = derive2 { name="smog"; version="2.1.0"; sha256="1mnnvp6crjwwiym16q4hmn9zwna1gblwqjlan4x9zyvgp1j70k26"; depends=[doParallel dplyr foreach ggplot2 magrittr Rcpp RcppArmadillo Rdpack rmarkdown tidyr]; }; @@ -16677,7 +16788,7 @@ in with self; { smurf = derive2 { name="smurf"; version="1.1.3"; sha256="0n99dzsb17r0a6d8nkijfg6rdvvc2g4pard2dnmyjq0p69j3f3gb"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; sn = derive2 { name="sn"; version="2.1.0"; sha256="12s4g9rfrnijdil7bqw66ikj5k3w6bdnz6fsgqsp0bkfsap9nps9"; depends=[mnormt numDeriv quantreg]; }; - snSMART = derive2 { name="snSMART"; version="0.2.1"; sha256="0vm1lrdlk64s49wi3dnfhm0l46swd0ssq6c16fh0qvzb59rc584m"; depends=[bayestestR condMVNorm cubature EnvStats geepack HDInterval pracma rjags tidyr truncdist]; }; + snSMART = derive2 { name="snSMART"; version="0.2.2"; sha256="1s4g379x34gw9mvfp2jm8wsnjp0z29639w6s5vhxa4nnxax3j41y"; depends=[bayestestR condMVNorm cubature EnvStats geepack HDInterval pracma rjags tidyr truncdist]; }; sna = derive2 { name="sna"; version="2.7"; sha256="0ka319s1w857fj28ja1i1ljgv2h6ji4d69riqy9pwhvvghsa83s4"; depends=[network statnet_common]; }; snahelper = derive2 { name="snahelper"; version="1.4.1"; sha256="1krmaynhvbbdvyy55h2b1h9w9pw1gjkd2ha4prhcm836rmvyb6av"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.0"; sha256="1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r"; depends=[stringi stringr]; }; @@ -16694,11 +16805,10 @@ in with self; { snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.2"; sha256="0frmasv04wd47h04zbwaryhiyxllarf3ggpa39p5qicjp6r7lilv"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; - snpEnrichment = derive2 { name="snpEnrichment"; version="1.7.0"; sha256="1lja1n26nr8lgbca2kraryv933jwa2w3h41appzylflf0w3liz9y"; depends=[ggplot2 snpStats]; }; snpReady = derive2 { name="snpReady"; version="0.9.6"; sha256="1r96j8zh84dn7qh3zgl0p0v3a80hx2wd3c4jgjlr43hzl7yglpqr"; depends=[impute Matrix matrixcalc rgl stringr]; }; snplist = derive2 { name="snplist"; version="0.18.2"; sha256="1sa2s3br4agx920jpr250iih61p99v500nh0c1w99w0846g9908c"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; snpsettest = derive2 { name="snpsettest"; version="0.1.1"; sha256="0vfm09bff7l7z36lzwp0ndnlb230f0kg6dlbjlpk028xd1iy4if1"; depends=[data_table gaston Rcpp RcppArmadillo]; }; - sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; }; + sns = derive2 { name="sns"; version="1.2.2"; sha256="1zb0s89lp2049i7l919dpd7bd396y9s6v8913qz56fvsq95sbvcn"; depends=[coda mvtnorm numDeriv]; }; sobolnp = derive2 { name="sobolnp"; version="0.1.0"; sha256="00rmigjyd3fsmhrhbvjzrfsl4ir0xpfr4xbgjws6vkx2rmcqnq1s"; depends=[minqa np pbmcapply]; }; soc_ca = derive2 { name="soc.ca"; version="0.8.0"; sha256="16l0synym91b7djgzdcz43dnvw44fkyxky9gm37ixbxzq1czdp9w"; depends=[dplyr ellipse FactoMineR flextable forcats ggplot2 ggrepel gridExtra htmlTable magrittr Matrix purrr RColorBrewer reshape2 rlang shiny stringr tibble tidyr]; }; socceR = derive2 { name="socceR"; version="0.1.1"; sha256="1vd0r3vixavg1br2q3kfn3nvl7dw854vkcfwcvyw411k84ivb13y"; depends=[Rcpp]; }; @@ -16714,8 +16824,8 @@ in with self; { sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - soilDB = derive2 { name="soilDB"; version="2.7.5"; sha256="0giijrfqgqyiq14bfwckizhplqyigz2vca91z56c8mrgj8ly4fxa"; depends=[aqp curl data_table DBI]; }; - soilassessment = derive2 { name="soilassessment"; version="0.2.4"; sha256="0sm20rg1c61163q44kayarkczphwjb16cs2vri46v0ybi8pnvm50"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rpart soiltexture sp]; }; + soilDB = derive2 { name="soilDB"; version="2.7.6"; sha256="1fw7wk9py5ifxrq2p08i9fdh5zass00b8gl6bw4lrpzpqdkzpfpk"; depends=[aqp curl data_table DBI]; }; + soilassessment = derive2 { name="soilassessment"; version="0.2.5"; sha256="1wpls6ipdripdd1fmfn3yil30ghcb1h6mrpax376gv48ndgf9q73"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rpart soiltexture sp]; }; soilhypfit = derive2 { name="soilhypfit"; version="0.1-7"; sha256="1ssz9w9ibw8mban0fq50j4lgr8vmkrsn8v9cpkg0wl28z1hqbhz3"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; soilphysics = derive2 { name="soilphysics"; version="5.0"; sha256="1ijnqlb52c3vm6ydiginp0f82vkip0kbsvbd9yac3scrc5g1b5z3"; depends=[boot fields MASS rhandsontable shiny shinydashboard]; }; soiltestcorr = derive2 { name="soiltestcorr"; version="2.1.2"; sha256="1yw3y655i9d7y18vcqyhh3yg3mc41bqb2ix9lbylzd83zp7g71c4"; depends=[AICcmodavg data_table dplyr ggplot2 ggpp minpack_lm modelr nlstools purrr rlang tidyr]; }; @@ -16752,31 +16862,31 @@ in with self; { soundClass = derive2 { name="soundClass"; version="0.0.9.2"; sha256="0z697asv2kzs93b45ndbkxfdzq3fmi1f6aprvpxps4x354gg2pi6"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.5.2"; sha256="1jbcn6rvch8w6myrmlbp19vlvpk9hnnqg06c2idlmxn52z5ga60g"; depends=[doParallel dtw foreach mvtnorm phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.5.3"; sha256="0mbf9c640gqx7amc94z0dc0b8lky1b6db4w60lsk0lad11f5zl9m"; depends=[doParallel dtw foreach mvtnorm phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; - sp = derive2 { name="sp"; version="1.5-0"; sha256="077q1wh9ihhcn1338xspnd90hy16ljxsav1xcrxdxj4fyynhd6lk"; depends=[lattice]; }; + sp = derive2 { name="sp"; version="1.5-1"; sha256="1pr9yb2wqapyizdfpi7zqd4a5b40q58czbfj6svvp2fkh6sfmfb9"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9-1"; sha256="1ivsds210rpxj52labc9mf2ncm3vji983w0kj757jl1b308ql30s"; depends=[mvtnorm survival]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.2"; sha256="00m1pww9a377fpharpqw3m30qx13l5xays6638h2jblrz8w71i8q"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; spBayes = derive2 { name="spBayes"; version="0.4-6"; sha256="0530fhb832nr1vzhwml696cbvwpphjha35i20q0aixxqg8fd35jw"; depends=[coda Formula magic Matrix sp]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.6"; sha256="1i5b0k1h2fq44n1hpb4cs5j2rz0s1x94d36yglvd24i55mjjzfk4"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.3"; sha256="0rphd8zawr2r14dzwv77plk5xw020pkc26ir72qiqc1acin42xd1"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - spData = derive2 { name="spData"; version="2.2.0"; sha256="07whxr039cxvk2nn65jada3i8vqqw34lgca9j17ah8chy9r0m73f"; depends=[sp]; }; + spData = derive2 { name="spData"; version="2.2.1"; sha256="1ddkk8c4dblv5p2rqvqx8b89k8pazvvq48rlw661vf2iwwvm8d2m"; depends=[sp]; }; spDates = derive2 { name="spDates"; version="1.1"; sha256="0k6383hgrs4751qnwx03s85a9a0ldpxm7xanrnmg13plc2713kvm"; depends=[data_table dplyr ggplot2 gstat magrittr raster rcarbon rlang smatr sp viridisLite]; }; - spFSR = derive2 { name="spFSR"; version="2.0.1"; sha256="0sqsa6spk9mz784abxazs9i3gv046za2la55xslrpn3b7d8wksl5"; depends=[future ggplot2 lgr mlr3 mlr3learners mlr3pipelines tictoc]; }; + spFSR = derive2 { name="spFSR"; version="2.0.3"; sha256="177yx24fgkdx8b82sd49cjp8dwghy85qbhns2a26ag05c1hcnwzp"; depends=[future ggplot2 lgr mlr3 mlr3learners mlr3pipelines ranger tictoc]; }; spFW = derive2 { name="spFW"; version="0.1.0"; sha256="1d00a01mnwc7lcnqgz2dfglhwqwhh9vm4yd904zq3s26zv4qapyf"; depends=[Rcpp RcppArmadillo]; }; spGARCH = derive2 { name="spGARCH"; version="0.2.2"; sha256="1wrmk2ybgysvibfy8vvp7pyqda5apqp0jxjfp3hlb416fza52966"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.12"; sha256="1ybjpm6737yr0pyqhk4fz4288r5mgkmknzfcw8ffc680b8qnxknr"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="1.0.0"; sha256="0z09hxmm2pbxsbm3zqk839z2gb3g2n2hqkahcbvcgywrqn3v8cal"; depends=[coda Formula RANN]; }; - spNetwork = derive2 { name="spNetwork"; version="0.4.3.2"; sha256="1srf7s22izqhh09ri0vsnb39mc8isjxcbik71iwxilykds6bh34x"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.4.0"; sha256="1k6qn5js38pvs8xzjqj7s3zyf3s3lrmqp666wi6wih79lpr5qaj4"; depends=[abind coda doParallel foreach lme4 RANN]; }; + spNetwork = derive2 { name="spNetwork"; version="0.4.3.6"; sha256="055h6xxs9kpl1yzcl5ha4pbgbzvp15vqr43xhbdic58flfgc13mr"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.5.1"; sha256="0c4mm0qczr1pc0k6nb3ms2i1lsrm6qfjwyv2szdd6ci66ac01kc6"; depends=[abind coda doParallel foreach lme4 RANN]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.1.0"; sha256="13mdbsbq51sp34xp04lgc4klwb3chnnkvh5r99qfapbbr0vra8vl"; depends=[devtools rlang]; }; - spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; + spTDyn = derive2 { name="spTDyn"; version="2.0.2"; sha256="010x3rjncasly1scngwyiys7asmk4ay51bzhk0zfjazwfkmqd12r"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.2"; sha256="0dlsyj0mawpgxr1yn4ldqm3xh148c79lk55fq475zjzyiwz9ynfc"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="4.0.0"; sha256="1cdba0g6brkl4gmlvb4n1bnh23xlbljk1f911f7wirvy0lzxvghm"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="4.1.20"; sha256="112jw1y95s704k230vnpa8lmzcallzvgrx4xkypdg0w8pp8ap7l3"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; spacefillr = derive2 { name="spacefillr"; version="0.3.2"; sha256="0raaw9ib8b2dzkh4w28wpxcgxs7ky328yaayb64lc39syf7g19dv"; depends=[Rcpp]; }; @@ -16790,22 +16900,22 @@ in with self; { spam64 = derive2 { name="spam64"; version="2.9-0"; sha256="1k2ah76l38xwzn7c541b7nip2yx8n8yh6p9j80rpkc3jdni2n9dq"; depends=[]; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="2.3.0"; sha256="1zp2wdqsc5plxwnzy8jidzmi18gvcwq87xnwzbxg60q794y09fql"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="2.5.0"; sha256="1f7xiy4c0b43qj8jf0a2s5fzp9l4qhnc5ysk8dq75hj7pabbhjbg"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; sparkbq = derive2 { name="sparkbq"; version="0.1.1"; sha256="0gccm8q5a45k9zm8f90r7fhcmriq8d038p022k7cikbr6rqsrmyh"; depends=[sparklyr]; }; sparkhail = derive2 { name="sparkhail"; version="0.1.1"; sha256="1a9p9i7fs6l9rx5ha6akjjl7qhfak01xsjg28ysv0imikmwp6hy7"; depends=[dplyr sparklyr sparklyr_nested]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="1.7.8"; sha256="13a4cl0ybmx53azp4fvgrmdk25c6k6dradfick1sighsqrav3q7i"; depends=[assertthat base64enc config DBI dbplyr digest dplyr ellipsis forge generics globals glue httr jsonlite openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="1.7.9"; sha256="0l495jxhdbj4wjc0chp3j32gd3sab9sd9pcm3977zsjyfhcp5i3g"; depends=[assertthat base64enc config DBI dbplyr digest dplyr ellipsis forge generics globals glue httr jsonlite openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; sparklyr_flint = derive2 { name="sparklyr.flint"; version="0.2.2"; sha256="0sszblvgxi8l8wlic5nrnm4pc9m0byyvayrja2476vnz0pqliv69"; depends=[dbplyr dplyr rlang sparklyr]; }; sparklyr_nested = derive2 { name="sparklyr.nested"; version="0.0.3"; sha256="0lva7fbjp253kxq3970h52cr8s52xycbi03d5shsyna8grhkbczj"; depends=[dplyr jsonlite listviewer purrr rlang sparklyr]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparktf = derive2 { name="sparktf"; version="0.1.0"; sha256="0jd018n7553q0ldv6whxbj2s38myig0m8zq4fbp8fsv34q5wnsx4"; depends=[sparklyr]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.6"; sha256="0nzw6lgjrgqd1hj46jd52s8s3vdb7q2nc500jlgd0ydrr12zd123"; depends=[DBI Rcpp sparklyr]; }; sparkxgb = derive2 { name="sparkxgb"; version="0.1.1"; sha256="1h7jk76v9wfm8qzqy6lhsmsp767wydwba9xyqszndl88295iac1j"; depends=[forge sparklyr]; }; - sparr = derive2 { name="sparr"; version="2.2-16"; sha256="0qhlkx7byx3245yzsk30zr4lgndjx5g1vr0s4azmcya245pp6rkw"; depends=[doParallel foreach misc3d spatstat spatstat_core spatstat_geom spatstat_random spatstat_utils]; }; - sparrpowR = derive2 { name="sparrpowR"; version="0.2.5"; sha256="187571srw0yhvqdgfpa374zmlaxhjmj9xlnh9gm2v4j46pfvrs5n"; depends=[doFuture doRNG fields foreach future iterators lifecycle raster sp sparr spatstat_geom spatstat_random]; }; + sparr = derive2 { name="sparr"; version="2.2-17"; sha256="0cdqhwx6qm9ngfc2lcafjqmrvqqi3kfrjl66n4dv65fpvprixmv3"; depends=[doParallel foreach misc3d spatstat spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; + sparrpowR = derive2 { name="sparrpowR"; version="0.2.6"; sha256="0hvayhf66m1ckqnhjr6b8szin76qifpysiiwnfnnff8ig3yphv7q"; depends=[doFuture doRNG fields foreach future iterators lifecycle raster sp sparr spatstat_geom spatstat_random]; }; sparseBC = derive2 { name="sparseBC"; version="1.2"; sha256="0a1siyi9kc805qji4alnw3c21spf4iw4wpsbfl50zvs52p8vl8w2"; depends=[fields glasso]; }; sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.4.1"; sha256="174lnhqig7m6fjfsj114ld059z9mjih3jzm5cq8iscxnhr9m11lr"; depends=[data_table MASS Matrix mgcv refund]; }; @@ -16817,11 +16927,11 @@ in with self; { sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0.1"; sha256="08xhpm9hp9x9rmiys4fvh9y4z2xsdkzckzw3lq0vlzvjcaynvidq"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; - sparseR = derive2 { name="sparseR"; version="0.2.0"; sha256="0agvynyv89msghwvc2ap98pdsmg2bvwa6kwc74fmmgpnzlxcjysf"; depends=[dplyr magrittr ncvreg recipes rlang]; }; + sparseR = derive2 { name="sparseR"; version="0.2.1"; sha256="0b9k96p66j2vn9yvcjw652lh9l6j5dbswhqhq0i4ps06jm5ks5av"; depends=[dplyr magrittr ncvreg recipes rlang]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; - sparsegl = derive2 { name="sparsegl"; version="0.5.0"; sha256="0s30gh65w1vvl13qgxwy907cyqzkv4rcdzs1zik4hfnl323g5lmq"; depends=[assertthat dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; + sparsegl = derive2 { name="sparsegl"; version="1.0.0"; sha256="1khf6r7fzddq2vxqvj70vsvjmk7ksivjz1vipwxnc6a3fr4lbg73"; depends=[cli dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; sparseinv = derive2 { name="sparseinv"; version="0.1.3"; sha256="06inzix9m7b5g7c97lyvyl2g7fdr4iz60791hl2w9mah7nd6bfja"; depends=[Matrix Rcpp spam]; }; sparsenet = derive2 { name="sparsenet"; version="1.4"; sha256="1r7xmpn3r8dq1zm6ghygks3l014kqlrpfgsl8q23w7rly8ksw3m9"; depends=[Matrix shape]; }; sparsepca = derive2 { name="sparsepca"; version="0.1.2"; sha256="0wk2nm37p15gb8i4s45izzzdmwywr56kv4g0j3jd5s3slm224vv4"; depends=[rsvd]; }; @@ -16835,15 +16945,15 @@ in with self; { sparta = derive2 { name="sparta"; version="0.8.4"; sha256="109i8yhv8snhpccrhxy1k8xcy9jj8m3li2d7vaylvxbrlnc26d89"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatPomp = derive2 { name="spatPomp"; version="0.30.0.1"; sha256="1aswvp49vl62pfr6gxb7ji2bqzkv3bv8mi9iyz4xl6sz0rj2xwzv"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; - spate = derive2 { name="spate"; version="1.7.3"; sha256="084iwp1wjrq06f3849iakzkik3gxms9lrq1l07kqyaz53di3dxjx"; depends=[mvtnorm truncnorm]; }; + spate = derive2 { name="spate"; version="1.7.4"; sha256="0fc09y54g1h9pmc0rfwbrlzsck27kxhsynzwyxydysmda133spdf"; depends=[mvtnorm truncnorm]; }; spatgeom = derive2 { name="spatgeom"; version="0.1.0"; sha256="1rvvnniryq9bb04v3i010p92v59zv3n47q1pn3bl9h92lgxlh18y"; depends=[cowplot dplyr ggplot2 lwgeom purrr scales sf]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; spatial = derive2 { name="spatial"; version="7.3-15"; sha256="1vwc7ingskdj1k4nq418x9yl3cw699pckb9xh5a1yp3g9plknqg5"; depends=[]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; - spatialEco = derive2 { name="spatialEco"; version="1.3-7"; sha256="0yhv4amqwbmcx6anzyrsmlrk25ishdlwyigyw9snd9d2v5k88s1q"; depends=[MASS raster rgeos sf sp spatstat_core spatstat_geom spdep]; }; + spatialEco = derive2 { name="spatialEco"; version="2.0-0"; sha256="1xjk2697mcih1swjplxb5fv9winlj362lffd5hd5sipcfpl888ws"; depends=[cluster EnvStats ks MASS mgcv RANN RCurl readr rms sf SpatialPack spatstat_explore spatstat_geom spdep terra yaImpute]; }; spatialRF = derive2 { name="spatialRF"; version="1.1.4"; sha256="1lbwk7ziv292kxkz6rpr44jij3q13ljmqaccq56x6c2l8wkxl583"; depends=[doParallel dplyr foreach ggplot2 huxtable magrittr patchwork ranger rlang tibble tidyr tidyselect viridis]; }; - spatialTIME = derive2 { name="spatialTIME"; version="1.2.1"; sha256="1raw6svphhwagyx6bkxbi83gvszkkb5pl5c76vhgsxp48hlzc5q2"; depends=[crayon dplyr furrr future ggplot2 gridExtra magrittr pheatmap plyr purrr RColorBrewer rlang scales spatstat_core spatstat_geom tidyr tidyselect viridis]; }; + spatialTIME = derive2 { name="spatialTIME"; version="1.2.2"; sha256="16mbmqycp70lgixp2ai9al2821v0vxvnc713nch5g4azrwzsaizi"; depends=[crayon dplyr furrr future ggplot2 gridExtra magrittr pheatmap plyr purrr RColorBrewer rlang scales spatstat_explore spatstat_geom tidyr tidyselect]; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-6"; sha256="14qccp9ca7b7v9w4fj04a99mx6qchfs8588fl16qfdmfbazwnfra"; depends=[deldir fields Rcpp rgeos rstan sp spam]; }; spatialprobit = derive2 { name="spatialprobit"; version="1.0"; sha256="1g65c081xmhfp45lidn57xwryk4pmzzixs3b2qzixzg4knks74dy"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; }; spatialreg = derive2 { name="spatialreg"; version="1.2-6"; sha256="07flzdw6pjhmx9skrjp9y05x9fayxk5ymcr50f1zxd8slcbl2f4v"; depends=[boot coda expm LearnBayes MASS Matrix nlme sf spData spdep]; }; @@ -16852,18 +16962,19 @@ in with self; { spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="2.3-4"; sha256="1nlrp7660y68axlm4pczc5rxbdhbbac1ylh69azr4swj1gbzi82f"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; - spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-1"; sha256="1mxynbk5sclf94fbrf6vicc48hwmdpxhyxylcmpmlqji4nhs97vx"; depends=[Matrix spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat = derive2 { name="spatstat"; version="3.0-2"; sha256="1k8qs5hsy0n4rh7ccp6bdnqgbw3fvjdp55bc0zhjqwbbhq8c0ax0"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat_Knet = derive2 { name="spatstat.Knet"; version="3.0-2"; sha256="1yvdasrxmsa2m9016kclb33kv5893fsz5rcr416yhpf6jixdsfh8"; depends=[Matrix spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_data = derive2 { name="spatstat.data"; version="3.0-0"; sha256="0mvh33sk2sfhfk276j088adzldrg8p6pd5avl2j21428i250byfg"; depends=[Matrix spatstat_utils]; }; + spatstat_explore = derive2 { name="spatstat.explore"; version="3.0-5"; sha256="0qn8dmymbnh9vdw0hysijkk2nwz5q69i62smpp8f3wy3z898lhwz"; depends=[abind goftest Matrix nlme spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="3.0-3"; sha256="111wj507i2mxi0ak8sj468w26pr2f7hgv3ssmbf0qjkp1v35cnvf"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; - spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-1"; sha256="1snvy4q0w4yn24n2yxyqvdi70i70zpqa7q13cm38d9135hm35cgk"; depends=[rpanel spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; - spatstat_linnet = derive2 { name="spatstat.linnet"; version="2.3-2"; sha256="0y1py6x0xbw4ad3pjwcspi4ysgfh61f5fd79787zzgyyh2va8y4w"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_local = derive2 { name="spatstat.local"; version="4.1-5"; sha256="0iq2xppfxp9aa3878z3l4q13qqzn3hg5v7cfv8z8m1mzmnw1r1y8"; depends=[spatstat spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_random = derive2 { name="spatstat.random"; version="2.2-0"; sha256="0kb01s8k67ydcfqcnz3i55vpiksihh4xsg0w2p2bclxxkpdvpw25"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; + spatstat_gui = derive2 { name="spatstat.gui"; version="3.0-1"; sha256="1y6z3gdad0nhqg494b5pjq4h0mr3mcrhnnc0chy56lf8chb6p5jb"; depends=[rpanel spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.0-3"; sha256="1y9crkj9sa1hnfsfkyyq8zv6fgafv07b8w0y01qps1rd6virnns0"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_local = derive2 { name="spatstat.local"; version="5.0-1"; sha256="02ip6d2mr07n3lv4i5xdmb1j55syk5hwjwr7j81ibxkp3gj8gm61"; depends=[spatstat spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_model = derive2 { name="spatstat.model"; version="3.0-2"; sha256="0a6lf5y0k13h60s0lnwwfrmxswl7avcg4fhqmha1nmycidhga8z9"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_explore spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_random = derive2 { name="spatstat.random"; version="3.0-1"; sha256="1dp58dxw7ln9bsls9ssbb917qakvgr9nf2jci6zq31rv0rf8934k"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; spatstat_sparse = derive2 { name="spatstat.sparse"; version="3.0-0"; sha256="1lhsa1gjahz6sp1yrlch0d01rnayyw8hip382vghyxljfly0mglr"; depends=[abind Matrix spatstat_utils tensor]; }; spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-1"; sha256="06mrw3nc2pqz4897i7wqy04mdfnn6drggv8mr92r3zb4cn0cg8fb"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="1.8"; sha256="1ybm4gs4q9zg0frva4hs5raqmbr6p8i9nr2zxi5vrxn8nq7iczmf"; depends=[fields iterators lubridate Matrix raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom spatstat_random stringr survival]; }; + spatsurv = derive2 { name="spatsurv"; version="1.8-2"; sha256="0v6l1vxcvy6bdg6inszcz4rryb99v9ixxcmh4a3381s4md9h6z4v"; depends=[fields iterators lubridate Matrix raster RColorBrewer rgeos sp spatstat_explore spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.5.5"; sha256="0yfkz28nfvl3rm0bxljb3y19zhnx7pabxy81d835pbfmjq5vvp51"; depends=[dplyr rlang sp tibble]; }; spc = derive2 { name="spc"; version="0.6.7"; sha256="02dw1hh3ksx119wf7qkg01m7h60pmsc3vkryw5fikyxyfz871ldl"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.6.3"; sha256="0lvsixjgdfgnr7y7kk2227bcs8sqy2mrpw50dwwgdjvm5q0sr7l7"; depends=[gridExtra rpart]; }; @@ -16873,6 +16984,7 @@ in with self; { spcr = derive2 { name="spcr"; version="2.1.1"; sha256="09clpz0vqssagmfjcrs2qp5i61ppjr9nxn342l6gbdnbw91wc7f3"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; spdep = derive2 { name="spdep"; version="1.2-7"; sha256="1slykkgvn7blj59lbzj0g0r0dqlcbp0gwnw43sihlbdz4m45kb4x"; depends=[boot deldir e1071 s2 sf sp spData units]; }; + spdl = derive2 { name="spdl"; version="0.0.2"; sha256="18iw1sx2cig2qw85d0vwa8s531pxvqkv9v9fyx0n1afq80pa93d7"; depends=[RcppSpdlog]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; @@ -16889,7 +17001,6 @@ in with self; { spectator = derive2 { name="spectator"; version="0.1.1"; sha256="0c3rk4nh3fdk49mazsbzqdq0wa0pznib567b0h915hv5i8kdsl5q"; depends=[geojsonsf httr sf]; }; spectr = derive2 { name="spectr"; version="1.0.1"; sha256="1jbadg9n42qrbw1v6hqrdp5pzy2nn1kvqi4xscxdxvc6c33i7zr4"; depends=[data_table foreach lomb]; }; spectral = derive2 { name="spectral"; version="2.0"; sha256="116gn41nvlw7jmr6qx9pl8hckg2pzgzx49kql52j5xqf39sgyx9p"; depends=[lattice pbapply rasterImage RhpcBLASctl]; }; - spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.3"; sha256="09nsszm2f6q8kz84kn7ihhb627q186jwpvr6fm633l8app4ilf2x"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; spectralR = derive2 { name="spectralR"; version="0.1.2"; sha256="0vjx0m7cibv0dk7p5la77caf66bj8k7djhw6i1nibghk7qf00lbk"; depends=[dplyr geojsonio ggplot2 reshape2 rgee rlang sf tibble tidyr]; }; @@ -16929,7 +17040,7 @@ in with self; { spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiralize = derive2 { name="spiralize"; version="1.0.6"; sha256="10zz0f3z033pqi9rm3kgac85i5h8ngg2cx4dlr8z5y8v08dpln6b"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; - spiro = derive2 { name="spiro"; version="0.1.1"; sha256="0pr3ivlqsn8pjpb0vphffcf37xwm3c712rq19fq8b2j7xlbfkgnc"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; + spiro = derive2 { name="spiro"; version="0.1.2"; sha256="026l0hq7jxm9hnmwmjkyvs7601yz9ljcz45pily6jb2gjcg4z8w7"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; splancs = derive2 { name="splancs"; version="2.01-43"; sha256="0j641xipb3nzncxwgf1adrcc95jqinhx68fr55mcixk93xg5cldk"; depends=[sp]; }; splash = derive2 { name="splash"; version="1.0.2"; sha256="1iviwf7dxlrbfzjigl8wd8q3i0jkdnb7mr8zy6zg0w81p4416q42"; depends=[]; }; spldv = derive2 { name="spldv"; version="0.1.1"; sha256="0v721z8v0dhnkcbljw592hhlgg32a6sh9hz4lx9p2jpkx8mpz9bb"; depends=[car Formula MASS Matrix maxLik memisc numDeriv spatialreg sphet]; }; @@ -16952,7 +17063,7 @@ in with self; { splutil = derive2 { name="splutil"; version="2022.6.20"; sha256="02hic08ckjg7iyjcyjncrkvjnpbpxk0v8g1yxy2s1vaw0mmfj4cz"; depends=[data_table ggplot2 magrittr]; }; spm = derive2 { name="spm"; version="1.2.2"; sha256="0slpy3cmv5l2gbgvy3yfdhzm73427bl39shadpmf3jkkbflcczsn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm2 = derive2 { name="spm2"; version="1.1.2"; sha256="1cf5j5gi4h8v5sjlbj279h5la8nscn3n3p3prmci9258593xgkjq"; depends=[e1071 fields gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; - spmodel = derive2 { name="spmodel"; version="0.1.1"; sha256="00d84xzhmqljz3gxrxp3bg9fk2rn1wiyks6rr3mmcmjqds6c80ln"; depends=[generics Matrix sf tibble]; }; + spmodel = derive2 { name="spmodel"; version="0.2.0"; sha256="16cawihxf9kn4q4jrv3qqmddkin323wcsrl3zl7js65q4dqkk6ka"; depends=[generics Matrix sf tibble]; }; spmoran = derive2 { name="spmoran"; version="0.2.2.6"; sha256="0d97saji49k69fgkg0zk5pdrmy81kvij96nv1v5y8axf8in2znhb"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; spnaf = derive2 { name="spnaf"; version="0.2.1"; sha256="1v19rhcy8na5iz0mqkadgmqyzq9maqnzb4s7l6blq6zz3krgaj0s"; depends=[dplyr magrittr rlang sf spdep tidyr]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; @@ -16964,14 +17075,12 @@ in with self; { spooky = derive2 { name="spooky"; version="1.4.0"; sha256="18qlm1dvspw2n7xanrxvflgvdppva3pxrs6m56cia2klv95rn1xn"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr scales tictoc]; }; spork = derive2 { name="spork"; version="0.2.2"; sha256="09n159nkrgpwf6ck24axgsxh6dm1xays9pgx940pzmaq7vzb5ng4"; depends=[ggplot2 latexpdf png]; }; sport = derive2 { name="sport"; version="0.2.0"; sha256="1wb28iaa35naf5aczijb5g0l41yf098f7c20mjmkcd5w04l1mmks"; depends=[data_table ggplot2 Rcpp]; }; - sportyR = derive2 { name="sportyR"; version="2.0.1"; sha256="1pbfdyhp5i377g59bg74w026y4sxx12m5x53l1qk2bhvyiib4a12"; depends=[ggfittext ggplot2 glue]; }; + sportyR = derive2 { name="sportyR"; version="2.1.0"; sha256="0wbhj2r1b19x4qc1dfj1nk7wjrap0fzf1k7pmqq9xl3dyrgc8rch"; depends=[ggfittext ggplot2 glue]; }; spotGUI = derive2 { name="spotGUI"; version="0.2.3"; sha256="0hybpw0lgqrzrryfp08qvl42hrgdmx2hq7bavxjihm8mp0375dmz"; depends=[batchtools gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyFiles shinyjs smoof SPOT XML]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; - spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.2"; sha256="04zmb0smljr0yszhd789mqm5ds3l71k5cfd9v173d04r5vv8z77a"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; - spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; spqdep = derive2 { name="spqdep"; version="0.1.2"; sha256="0q2sp76kgrmw2w033m9i69vx0shziazr31akjmighcy1pdz3b695"; depends=[broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rgeoda rsample sf sp spatialreg spdep tidyr]; }; - spray = derive2 { name="spray"; version="1.0-20"; sha256="0p8xwjwjrpfk5nwrap5vbnab4gpn6cjsgzkxbk70xdwbx3r1cv5z"; depends=[disordR magic mathjaxr partitions Rcpp]; }; + spray = derive2 { name="spray"; version="1.0-22"; sha256="1dzv0ciimiprxsmqb9b49sx4j3i6jakx4sw4bhhmfklsj0p018r2"; depends=[disordR magic mathjaxr partitions Rcpp]; }; spreadr = derive2 { name="spreadr"; version="0.2.0"; sha256="180dvr39i1glc0jllsnnglwrxh133q20v7px2fmdi7229pr175id"; depends=[assertthat extrafont ggplot2 igraph Matrix Rcpp]; }; spreval = derive2 { name="spreval"; version="1.1.0"; sha256="1zapfld0d6yyxqvijkb243zqin9xwqhmnznd2nnd4cp0rq3106zf"; depends=[interp timeDate]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; @@ -16979,8 +17088,7 @@ in with self; { springpheno = derive2 { name="springpheno"; version="0.5.0"; sha256="16pa56k1pbazv3vx5lhzc8n3pazrfh1q4bi7116bbvsdgpp9vs8g"; depends=[]; }; sprintr = derive2 { name="sprintr"; version="0.9.0"; sha256="0nnzjn7zrcgcmk3rs0hn56jcjrzrn5z0kc77bv4zzvbz5vr8gbwj"; depends=[glmnet Rcpp RcppArmadillo]; }; sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; - spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; }; - sps = derive2 { name="sps"; version="0.2.0"; sha256="17ljrl3cn18isazi763iff5yxg916a5ck82mzc0clvxav1bcwyxr"; depends=[]; }; + sps = derive2 { name="sps"; version="0.3.0"; sha256="07y3hwkkzj8pd6by9wlipx1s7d2b4pj0kv3xv8g8ih4mriv33d8b"; depends=[]; }; spsComps = derive2 { name="spsComps"; version="0.3.2.1"; sha256="0b4bai6yk6spcansjfnxd5328jlf46cjqqjj3f5dd2kph2rx4kqw"; depends=[assertthat crayon glue htmltools magrittr R6 shiny shinyAce shinytoastr stringr]; }; spsUtil = derive2 { name="spsUtil"; version="0.2.2"; sha256="1hhiz2bmgrvpadag1d4ljynk7mhwknaslja9hcmf665l2x3hzdl6"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; @@ -16988,10 +17096,10 @@ in with self; { spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsur = derive2 { name="spsur"; version="1.0.2.5"; sha256="0ar1b48r2hi50rvzkr432lpcc4c9r72hxkz74gip5gf12i7mx2ci"; depends=[Formula ggplot2 gmodels gridExtra MASS Matrix minqa numDeriv Rdpack rlang sparseMVN spatialreg spdep sphet]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; - spsurvey = derive2 { name="spsurvey"; version="5.3.0"; sha256="1wvl6lbww82c1z83928zgn5l1ciayppb6k84l2syxn6fs1xjadbc"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; + spsurvey = derive2 { name="spsurvey"; version="5.4.0"; sha256="1sd7h342yih8hgiry0zip0nymgnak5d67320kimv6ajrx13v23z3"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; - sptotal = derive2 { name="sptotal"; version="1.0.0"; sha256="0lcq7ldrgy93i1pk2hhwfmhqhmijv9g5p7jdsh9hrfky51w8vrql"; depends=[ggplot2 sp viridis]; }; + sptotal = derive2 { name="sptotal"; version="1.0.1"; sha256="09wkcc1lbc9d0m19ncqcb3xxgl30lyii6r5nqb9rbjqyf2jl2iak"; depends=[ggplot2 viridis]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="1.3-2"; sha256="098zga5dm785v5k0s0ql6j17i6zbnka0yhfni4irlki3y1ndw78m"; depends=[gstat magrittr mvtnorm purrr raster sp whisker]; }; sqldf = derive2 { name="sqldf"; version="0.4-11"; sha256="0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"; depends=[chron DBI gsubfn proto RSQLite]; }; @@ -17008,13 +17116,13 @@ in with self; { sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; sregsurvey = derive2 { name="sregsurvey"; version="0.1.2"; sha256="1wsfjnkszxvx4pjgpi2v14s94d7rpl13pallja6rfcmsgxp3kc2l"; depends=[caret dplyr gamlss gamlss_dist magrittr TeachingSampling]; }; - srm = derive2 { name="srm"; version="0.3-6"; sha256="0mc97pv1hsmia4v2wyb8yi37i3v1xypfv9xmhjb989xnnysf1lm3"; depends=[Rcpp RcppArmadillo]; }; + srm = derive2 { name="srm"; version="0.4-26"; sha256="1cw0a0n1chnri6jmcav04qa52s8jakviwjpq1yx1x5z2ya978r26"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; srt = derive2 { name="srt"; version="1.0.3"; sha256="0m94ycnrlgjvlx9jzb05rdg57yxwsw3p7zjih0m04vb1369j83q1"; depends=[]; }; srvyr = derive2 { name="srvyr"; version="1.1.2"; sha256="1qysngpvpyncv5hhnvkicsj0laxc44ljbndp0ycgk53rj60mczfg"; depends=[dplyr magrittr rlang survey tibble tidyr tidyselect vctrs]; }; ss3sim = derive2 { name="ss3sim"; version="1.0.3"; sha256="0s2yajlhi07fvqc0rr4msd9g2jrswb83dx55wsxnw925vikqa5kz"; depends=[bbmle foreach ggplot2 gtools r4ss]; }; ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.5"; sha256="069jsp2l63jp4fv2hwadqxpkp89aqmbh439zy66rx55kws75b556"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; - ssaBSS = derive2 { name="ssaBSS"; version="0.1"; sha256="1gprl725am933fqlhhxzwrg7k08sy0xndmg8v8hifxfwq9nbk0w9"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; + ssaBSS = derive2 { name="ssaBSS"; version="0.1.1"; sha256="1sfhrp5y4hhnc417jq2vyk935iyicl58jbw4nwrj3rayh0ng7dbp"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; @@ -17026,7 +17134,7 @@ in with self; { ssfit = derive2 { name="ssfit"; version="1.2"; sha256="1xq3gb76hs1mypjn6zyhwki5qkw3bnj51ljm10khky607mq5qz6q"; depends=[survey]; }; ssgraph = derive2 { name="ssgraph"; version="1.14"; sha256="06cqa9q311jy4iggwh7vksxxkzy2lvrppqx2apc7gwmrslw1qzgl"; depends=[BDgraph]; }; ssh = derive2 { name="ssh"; version="0.8.2"; sha256="14sasc28ipjdhb0k8ziby2v4n8gfmsp917y9725h6fsq0n01p002"; depends=[askpass credentials]; }; - sship = derive2 { name="sship"; version="0.8.0"; sha256="0khmi81pw5vqv42v9iynq7r9jwan8g2xzlapp26y9i3kyxfavg17"; depends=[httr jsonlite openssl RCurl yaml]; }; + sship = derive2 { name="sship"; version="0.9.0"; sha256="0h0cbbvqfmik2z0qp34gym81p01x01yndymczb8vpqnj0nfnmyhc"; depends=[httr jsonlite openssl RCurl yaml]; }; ssimparser = derive2 { name="ssimparser"; version="0.1.1"; sha256="01c9kbvdrkchf4rad9hysyflpkgdj294lbk94fc5pkc49fqznmrx"; depends=[airportr dplyr magrittr stringr tidyr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.3"; sha256="1yirk6sl72d99sznvr5hm1sn4766sfrw66hhffb9g88b19lfpprd"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.3.2"; sha256="1qw10yswzpg28fhvr6rsq0gh7xivfapw64gxc0hakb1nc31jf8ky"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; @@ -17073,12 +17181,12 @@ in with self; { starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starnet = derive2 { name="starnet"; version="0.0.6"; sha256="0gbg8svyj4nh846q7986ap7jjry599kb1348k9lifz19kvyr4rn4"; depends=[cornet glmnet Matrix survival]; }; starry = derive2 { name="starry"; version="0.1.1"; sha256="16qj20glr5xwh718r0mh0qgbqikwg3si78yxq61z16i3qfb0gdp6"; depends=[bslib dplyr ggplot2 magrittr shiny shinyjs shinyWidgets]; }; - stars = derive2 { name="stars"; version="0.5-6"; sha256="0qcli9bangpym4yp96yfibd5f4li5qw1622jnbvzfd9n8aakqhg0"; depends=[abind classInt lwgeom rlang sf units]; }; + stars = derive2 { name="stars"; version="0.6-0"; sha256="0zwbsqp8bihcq5sjdw05pvbh4l9s68p0qw3ffkk0jphsipvy9za9"; depends=[abind classInt lwgeom rlang sf units]; }; starsExtra = derive2 { name="starsExtra"; version="0.2.7"; sha256="06l9rpgw1dmvvn3389zzqrq4y87192k4zzj7xgvwzrdlrcxsqdh7"; depends=[mgcv nngeo sf stars units]; }; starsTileServer = derive2 { name="starsTileServer"; version="0.1.1"; sha256="04z3xaijhgn5g10vvx19lya6v17ypcq00w4jlgkap3fafw61pqhn"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; starschemar = derive2 { name="starschemar"; version="1.2.0"; sha256="0jjaic1zwdc3lvdlgs0vzkjjivjs2dskmhx4qg469ban34az0591"; depends=[dplyr generics pander purrr readr rlang snakecase tibble tidyr tidyselect]; }; - startR = derive2 { name="startR"; version="2.2.0"; sha256="12kigspfpmzibnr7y8m906qj1hm596wx8asghi0fd4598nk1w0s3"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; - starter = derive2 { name="starter"; version="0.1.11"; sha256="1jxwg09dl6mx4zxz8gx45kd0mfd87nhkai0p64z5wmvhds6syfbz"; depends=[cli dplyr gert glue here R_utils renv rlang rstudioapi]; }; + startR = derive2 { name="startR"; version="2.2.1"; sha256="1sjhyv4rnb42pa5p4lz9dn87jl5npdclllpypkxs1wbi5241ajcd"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; + starter = derive2 { name="starter"; version="0.1.12"; sha256="1ydqz8m9zfis0gv9sx12gs4m9kz7xk9f2l55pzifwl0m61a04c65"; depends=[cli dplyr gert glue here R_utils renv rlang rstudioapi]; }; starticles = derive2 { name="starticles"; version="0.1.0"; sha256="11jmjsbzniyfnszfffhr78rqa588y77rlx2sbp92a3jpmcbx0h56"; depends=[bookdown knitr rmarkdown]; }; startup = derive2 { name="startup"; version="0.19.0"; sha256="00rqvk6acg28ls4p8gfdxvzmpmkgx6gk52vdjxh63l1a50xgymg6"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; @@ -17101,8 +17209,8 @@ in with self; { statgenGxE = derive2 { name="statgenGxE"; version="1.0.5"; sha256="1kq5bin4k66d8l9l4z2b0gx6s8ick5fim0qcsjayvgip25gkxf5z"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.5"; sha256="1lclxc4al3h7z5cbjhmm6p1hr22gysz16hlvfams37czbc2prlha"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra locfit lubridate reshape2 scales SpATS]; }; statgenIBD = derive2 { name="statgenIBD"; version="1.0.5"; sha256="0jiw3rivlmgg883m8jsjzq6gckb2vim4fx1kr1rb3r76i8q2p1ql"; depends=[data_table ggplot2 Matrix Rcpp RcppArmadillo stringi]; }; - statgenMPP = derive2 { name="statgenMPP"; version="1.0.1.1"; sha256="1i7ybvpxs1n1abvk2in5ydhcr5dcvmwqik6w7hn6nw7ak4dg3jws"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; - statgenSTA = derive2 { name="statgenSTA"; version="1.0.9"; sha256="1j9z10zkjwmbg4wgr0bs34dh7qmdkjm2xa6hl4ka1rbj0sn435ld"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; + statgenMPP = derive2 { name="statgenMPP"; version="1.0.2"; sha256="1qpf9gic9671hr6zyj56sqwx9wl51qr6gj84rfssdla718h766im"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; + statgenSTA = derive2 { name="statgenSTA"; version="1.0.10"; sha256="0ki6k1j8fxfys787bmk6drl900c5qkqp2271l4zyh1nn2750z35s"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; static = derive2 { name="static"; version="0.1.0"; sha256="1n9ijilh81w2fz4cyd4abjj7qam8q7rirmp8lni5cxsb4il0qbfa"; depends=[]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.0"; sha256="07kwlmambjv7njgpw1dhsm2zrv1lk6xj2k6a6psysjllrf5zz8ga"; depends=[knitr kutils rmarkdown]; }; @@ -17112,13 +17220,13 @@ in with self; { statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; statnet_common = derive2 { name="statnet.common"; version="4.7.0"; sha256="1cx1h1yzs8jjxk10y2h0wl69caspzgx5wdqp36dp4sxm0sk335xn"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; - statnipokladna = derive2 { name="statnipokladna"; version="0.7.0"; sha256="0xds27abs9x853nhy5xljldmxh5xrkxfgn5q6qw8b093ynrsvbrp"; depends=[curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr tidyselect usethis xml2]; }; + statnipokladna = derive2 { name="statnipokladna"; version="0.7.2"; sha256="1n7gvr57c27ilxrnpmr0bz6hc0d39lp6rnn4dkqdwdapzyhfymq4"; depends=[cli curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statpsych = derive2 { name="statpsych"; version="1.2.0"; sha256="1vi2zja65ypny3p4wxb27aw9hl1mb7xbrdpl602bv1wxxbvw87ql"; depends=[mathjaxr mnonr Rdpack]; }; statquotes = derive2 { name="statquotes"; version="0.3.1"; sha256="08xvnqbh0ax261hhgq1pkmcpvdcy44nhhmsxaapy9q8ppfvn7vi1"; depends=[stringr tidytext wordcloud]; }; - stats19 = derive2 { name="stats19"; version="2.0.0"; sha256="0minav2ab9xa9xq5mardjcijaxhs3v1izxmy15v5zf04lhvz4f03"; depends=[readr sf]; }; + stats19 = derive2 { name="stats19"; version="2.0.1"; sha256="1qjf0q952qffphia6h7haff764k9iiwm9lyw9h5jcga03q733myb"; depends=[readr sf]; }; stats4teaching = derive2 { name="stats4teaching"; version="0.1.0"; sha256="1i2v97k6c75096hp23zpffmdbajdzzkqp508p9dvw841vpx2wxdn"; depends=[asbio car clusterGeneration knitr MASS MVN nortest psych pwr rstatix]; }; - statsExpressions = derive2 { name="statsExpressions"; version="1.3.4"; sha256="12ji5j8y62j44f4zzxhvxhzw3zr0dgdfnmi5y09k3j66mx8spv77"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; + statsExpressions = derive2 { name="statsExpressions"; version="1.3.5"; sha256="0phjaxyq04ysrchimq5q9i3zzy0qhrs5r08m2l14k35s2303s285"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; statswalesr = derive2 { name="statswalesr"; version="0.2.0"; sha256="03h0gq8ag51my5z8mw78rhbkksfpa7af8my6lb468wrcfv69k0gl"; depends=[curl dplyr httr jsonlite rlang]; }; @@ -17130,6 +17238,7 @@ in with self; { stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; steepness = derive2 { name="steepness"; version="0.3-0"; sha256="1lv2n4s8dj7axsmwmpfp4aw6v530r7437f44533pbx6p4n71hpzl"; depends=[]; }; + stelfi = derive2 { name="stelfi"; version="0.0.1"; sha256="0rjkvrn3vwd4mzb2042syfhds4za4cqqlhjs6l95d09rn1q7nahx"; depends=[dplyr ggplot2 gridExtra Matrix RcppEigen sf TMB]; }; stellaR = derive2 { name="stellaR"; version="0.3-4"; sha256="0spn25fbsfswx2rshzk34pqkicynyl256a4f7xrh51bhyh9qff44"; depends=[]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.2"; sha256="1l2y4jlszz1dnafdl2wqqfgdjis07i3gzfnp1v1af32pvjy4zqhw"; depends=[cluster igraph xml2]; }; stenR = derive2 { name="stenR"; version="0.6.9"; sha256="19vn7123wys1jqrm4y8f6b4kvwygi1ql6ady2d5jz93vf29ihdzj"; depends=[cli data_table dplyr moments R6 rlang]; }; @@ -17137,26 +17246,28 @@ in with self; { stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.1-3"; sha256="1v1q4skd3k74nsdkv4ly5h1w10hlxpzcscswghan8r27k502vq12"; depends=[digest lowpassFilter R_cache Rcpp]; }; - stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.2"; sha256="1fpnni4fz8hh9z0yld696wz2qpc2bwajp8pyfgjms9f2figx9prl"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; + stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.3"; sha256="04ks599bb3rbyc81kyakj6nmj7i8fvkb1pild0gd3i6j84j70071"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; stepdownfdp = derive2 { name="stepdownfdp"; version="1.0.0"; sha256="1yqzxn4d52ih03f0mpvb9dw9pn9jfbgnyay1pfhh112zml5h6i3m"; depends=[pracma]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.0"; sha256="1psjnxc7dadbm1405wm3vgsf9m2pn8bm82rn9md3cxhp33jqh1bx"; depends=[gbm spm steprf]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; + stepmixr = derive2 { name="stepmixr"; version="0.1.0"; sha256="1psq9znrk3za9cgvhbnfh7jy77mwr2h03y5iqdk8za3n6dy0fdg0"; depends=[reticulate]; }; stepp = derive2 { name="stepp"; version="3.2.5"; sha256="0srjx950hy7v1xmhhnimvndpyz2wm8l03z67z0zxjg2w7wnqrqvs"; depends=[car rstudioapi scales survival]; }; steprf = derive2 { name="steprf"; version="1.0.2"; sha256="1wscxnglxi61agmfn1zmhh75c7h5394r8d8khr02p22a234npqqi"; depends=[psy randomForest spm spm2]; }; steps = derive2 { name="steps"; version="1.3.0"; sha256="0yvqz5jhzwqkm3gphb2mmlq1ip6sr8g6c09hirs827j12dj63ixf"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; - stevedata = derive2 { name="stevedata"; version="0.7.0"; sha256="1shi1abzf4vkz790f6b4720g28hh6kzsi40mdw7gp9xwr97a1dyz"; depends=[]; }; - stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; + stevedata = derive2 { name="stevedata"; version="0.8.0"; sha256="0cf0mik421j607bc9ymyf89qd8fzaqibskhkfzqlv4qqj2xab4l5"; depends=[]; }; + stevedore = derive2 { name="stevedore"; version="0.9.5"; sha256="0xxslmll3xg2a71k3bgxfdkz0xcvlsy0cgm9l5din0ml55f3xz5n"; depends=[crayon curl jsonlite yaml]; }; stevemisc = derive2 { name="stevemisc"; version="1.4.1"; sha256="1d0avg7f1r95k6dvm1vhvji2gadqxkm77pbnljad2p4145sxc41x"; depends=[arm dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="0.8.0"; sha256="0rm39jrzzi10ncl59xhixy0a9fiwqw5s10pxr90gckscxz1bjkwc"; depends=[rmarkdown]; }; stfit = derive2 { name="stfit"; version="0.99.9"; sha256="0668nnsgkdd2v7bx06wnq8sc0asbi19p4752jm0hj2jziiibk0kn"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; sticky = derive2 { name="sticky"; version="0.5.6.1"; sha256="1szfpay9cpdwq6v5fmnjyr00r4zhz6zd2rrl3h88v9l5xpfafi4w"; depends=[]; }; + stickyr = derive2 { name="stickyr"; version="0.1.0"; sha256="0wqk4w732xb8dhbjfy1q613pia9rrmilsbpngacgw9sinsd1iq6m"; depends=[dplyr ellipsis generics pillar purrr rlang tibble tidyselect vctrs]; }; stilt = derive2 { name="stilt"; version="1.3.0"; sha256="0b1bs849hw2wcvaldybxk8h8wgwl6p7x4i7winncvngmhplgrvx4"; depends=[fields]; }; stima = derive2 { name="stima"; version="1.2.1"; sha256="091pjjr2pvd93l01szyj5gr9ixv1h90yd18h678nhpn0fncimszv"; depends=[rpart]; }; stinepack = derive2 { name="stinepack"; version="1.4"; sha256="0crl77gr4x2bz2zp0a0lqiw5iqlrcx7vj67igkbzg64d1fxai85d"; depends=[]; }; stlARIMA = derive2 { name="stlARIMA"; version="0.1.0"; sha256="1bh88dd9md8w8qhmha02v2b7cz0pfk6yrc5bhxj8xv9cwanl7g6r"; depends=[forecast]; }; stlELM = derive2 { name="stlELM"; version="0.1.1"; sha256="1q3lcfqq06jfky388v7iilnnqbr5f4gq451xkc2kl04yl0dwcv2h"; depends=[forecast nnfor]; }; stlTDNN = derive2 { name="stlTDNN"; version="0.1.0"; sha256="1j2f9kxlry15xp7bc03h5jr7v8gzq8frdxyzhq9s78m3d3dbixf4"; depends=[forecast nnfor]; }; - stlnpp = derive2 { name="stlnpp"; version="0.3.8"; sha256="1lx2fkqal2mf55xx0rwy9wf9fkr9n0vrp8fwic4grjcq0v5cf75k"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; + stlnpp = derive2 { name="stlnpp"; version="0.3.9"; sha256="0d8afddz7gwdmrciz8bvwfxil7bfpf9h81rcb52mmr7j9da36mp4"; depends=[spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_random]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.3.6"; sha256="0qwq4nin2n9fjd06852r8k7arvcgh46kcfb3lm21swgx6j8bgrhb"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; @@ -17165,6 +17276,7 @@ in with self; { stminsights = derive2 { name="stminsights"; version="0.4.1"; sha256="1ll2chjz9r08lya2z7dnxjqdnwrvw7jn05mpvvxi1w8s2npsggib"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; stoRy = derive2 { name="stoRy"; version="0.2.0"; sha256="1mxnnmg6wqp40hyh2mjd39vpzks78rr59pdlyxljlpnlslgkf1md"; depends=[cli crayon dplyr fansi httr lifecycle purrr R6 rappdirs readr rlang stringr tibble tidyjson tidyr]; }; stocc = derive2 { name="stocc"; version="1.31"; sha256="0d0n9nrcva0vradippq30y6dc6klwd1mllnzpnzq9rczpz5cw7mw"; depends=[coda fields Matrix rARPACK truncnorm]; }; + stochLAB = derive2 { name="stochLAB"; version="1.1.1"; sha256="11vk5vd8y4md29cawf2x9m9zrmd0rl6vbfmhs4fzkcm4xsyp1brh"; depends=[cli dplyr glue logr magrittr msm pracma purrr rlang tibble tidyr]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; stochvol = derive2 { name="stochvol"; version="3.2.0"; sha256="1ix8x3gmm5advdxk0rd0p26x3487qmw6pv4mi628vjqpmvnv42fr"; depends=[coda Rcpp RcppArmadillo]; }; @@ -17174,7 +17286,7 @@ in with self; { stockfish = derive2 { name="stockfish"; version="1.0.0"; sha256="1il3na3d96k34vj62pvxrs2ah3a9ly8ww3gi3nr0459piw4wd611"; depends=[processx R6]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-4"; sha256="06q35faqrcarx6n00i5s45ynpwi6n6xizyr8w9c436c4ahg0xvyh"; depends=[]; }; - stokes = derive2 { name="stokes"; version="1.1-3"; sha256="0d15x80vn6g0fwvphdqdl7fyldzw5pcrjlx5c93bdcx1kx2g7sqa"; depends=[disordR mathjaxr partitions permutations spray]; }; + stokes = derive2 { name="stokes"; version="1.1-6"; sha256="074kzvzgk83n2bzcvygxiy8cm5sxswkp593rjixa4kvaqc7g7w0y"; depends=[disordR mathjaxr partitions permutations spray]; }; stopdetection = derive2 { name="stopdetection"; version="0.1.1"; sha256="07l2rr047p0hpvgmr7c5x0by456n107r9d0qj4xrrigq5i6srrqk"; depends=[data_table geodist lubridate]; }; stoppingrule = derive2 { name="stoppingrule"; version="0.1.0"; sha256="045z4bfvqkf62bmm4zaifl34hbcd191jv77s8ddbv1a7nqc52ds1"; depends=[]; }; stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; @@ -17182,15 +17294,15 @@ in with self; { stortingscrape = derive2 { name="stortingscrape"; version="0.1.2"; sha256="0dy9cw20wxnghli8p1zf8dn2ms38p33521inr7x2vxnj80qpvkjk"; depends=[dplyr httr rvest stringr]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="1.0.1"; sha256="0x4v7c6cdg6hdw5f65jk6bb4cp85khhc1dgvwcxy1yjzjd4g7b3k"; depends=[curl data_table dplyr httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; + stplanr = derive2 { name="stplanr"; version="1.0.2"; sha256="0wp9vxv9z7qm6k5kmsilpdaabgmwx4r3hyr4bggjwrpcf0bd59x9"; depends=[curl data_table dplyr httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; stpm = derive2 { name="stpm"; version="1.7.12"; sha256="16kp69356bj1s26iwwysxdyr87kd3jqhj2gmmz4vc003ai63ga6y"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; - stpp = derive2 { name="stpp"; version="2.0-6"; sha256="0ii799kqn8ydgi4bqs292fff7my5fdbrvwnizqphbk7k8xf4w5vx"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom spatstat_random splancs]; }; + stpp = derive2 { name="stpp"; version="2.0-7"; sha256="1w9jn71ha817gldfhkmr2vfx3nkr78g1y662rfxg6flx2wyxs3kq"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_explore spatstat_geom spatstat_random splancs]; }; stppSim = derive2 { name="stppSim"; version="1.2.7"; sha256="1hg53fxpp4k6vfafd1aasjf4z1vaik5y137i424jhbxf69aqgl2b"; depends=[chron cowplot data_table dplyr geosphere ggplot2 gstat ks leaflet lubridate magrittr raster rgdal sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; strand = derive2 { name="strand"; version="0.2.0"; sha256="0gd9nnbdilvk4bszg77bxilan6qpg1np7c38w1b7j5sr3r30y5in"; depends=[arrow dplyr ggplot2 lubridate Matrix R6 Rglpk rlang tibble tidyr yaml]; }; strap = derive2 { name="strap"; version="1.6-0"; sha256="1c4p9gjjjjc7zjml7r7qhb040va8s4x16jqia3j1j5h56d6wlh7m"; depends=[ape geoscale pbapply]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; - stratEst = derive2 { name="stratEst"; version="1.1.4"; sha256="1g764h17sh499p0a5ixs61q8l1hssvi7v4c34i90rdf81l72i0mg"; depends=[Rcpp RcppArmadillo]; }; + stratEst = derive2 { name="stratEst"; version="1.1.6"; sha256="0m41866xr21h4mih4z98y6pcrp2ws0mxxx157vdhbv7rhlh5djvp"; depends=[Rcpp RcppArmadillo]; }; stratallo = derive2 { name="stratallo"; version="2.1.0"; sha256="1j3ncm0plpgg3crbw69ksy7fy2db464dim1pmgslcmh0y5lvwy38"; depends=[checkmate lifecycle]; }; stratamatch = derive2 { name="stratamatch"; version="0.1.9"; sha256="1z395355kac0wd4f0m1ijh851m046ra8h1wam04if4qp00ychajp"; depends=[dplyr Hmisc magrittr rlang survival]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; @@ -17212,11 +17324,11 @@ in with self; { strider = derive2 { name="strider"; version="1.3"; sha256="114j0qpdyg8rrhj68zq596pgc4h7ja39n0rfxf0x9qg7imhaj1h6"; depends=[BH Rcpp]; }; string2path = derive2 { name="string2path"; version="0.1.1"; sha256="1wlyrx7gbqjbzhd6xgmbhr3x09lk48yb110dmgxqh48gjky2ngvh"; depends=[cli tibble]; }; stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; }; - stringdist = derive2 { name="stringdist"; version="0.9.9"; sha256="0pkggr25azadczhnsxc9wh1753wigf3wijyvwfc2ip5a42c1f55x"; depends=[]; }; + stringdist = derive2 { name="stringdist"; version="0.9.10"; sha256="1s3cy2q6l4ppgslwfbfydi5f3kzshfhzkb25gz546n7jgw5jxm3g"; depends=[]; }; stringfish = derive2 { name="stringfish"; version="0.15.7"; sha256="0ddpsi7z0kzqgbq9y646pk9afclq0r7ak22zsdh0i93ni0x71c9l"; depends=[Rcpp RcppParallel]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; stringi = derive2 { name="stringi"; version="1.7.8"; sha256="074b8wky3dhm4vcdqliwz6cqw20ah2x4dcasvnidilbfrnqii2ak"; depends=[]; }; - stringr = derive2 { name="stringr"; version="1.4.1"; sha256="1cfw1lv64lzg16zb04c0fcmd3gx8vq9x73hqikqhgqd3ra88w3gc"; depends=[glue magrittr stringi]; }; + stringr = derive2 { name="stringr"; version="1.5.0"; sha256="0fk34ql5ak57f06l10ai300kxay6r7kkkyfanh8r24qaf3bmkcaj"; depends=[cli glue lifecycle magrittr rlang stringi vctrs]; }; stringx = derive2 { name="stringx"; version="0.2.4"; sha256="1l87y6akq3a6fv1s7imn5g3rsmsbijqk6a3gcfws1i1g59ripznx"; depends=[stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; @@ -17228,7 +17340,7 @@ in with self; { stuart = derive2 { name="stuart"; version="0.10.1"; sha256="03rd3h2xs3n5xz9zbahi6mwap7yj22b7p71gp0dq04xszfi3jdkc"; depends=[]; }; studentlife = derive2 { name="studentlife"; version="1.1.0"; sha256="1xvlcwg7ckxsm5hb5ax8r3hzdqnx61ax59ini5xc5jrsmir13g67"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; - styler = derive2 { name="styler"; version="1.8.0"; sha256="1iw4nj68aj4psysrpyy7s6g3r3vhpfk8s05n6d20m2qmmk0p92sg"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; + styler = derive2 { name="styler"; version="1.8.1"; sha256="1sc1xr9pfrbd2yyzyyxpj8dd81djmsr00gxgr0mr18habyl5yl0m"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; stylest = derive2 { name="stylest"; version="0.2.0"; sha256="1c036zsn1gi5vhsz37p56wz1bcr3pwdp2k62j7ikmrrnkcv2w9kz"; depends=[corpus Matrix]; }; stylo = derive2 { name="stylo"; version="0.7.4"; sha256="0vjfpz4bpdrsax7a0gsj9cwddbsayb4n5fr5xskz63lfrjg2ppcb"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; @@ -17240,7 +17352,7 @@ in with self; { submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; subniche = derive2 { name="subniche"; version="1.5"; sha256="1w5xsfqq1y9gy8wrxmfxk02jhzmyg2cdky7vm7qdcg9l63dhracj"; depends=[ade4 polyclip SIBER wordcloud]; }; subplex = derive2 { name="subplex"; version="1.8"; sha256="19g5bd39gmcn27xdsklkzxg99x1r5v5q8zcw1iwry31qj24ivhrv"; depends=[]; }; - subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; + subrank = derive2 { name="subrank"; version="0.9.9.2"; sha256="19mxmapxjqv1k26bnis4zkrqpgvl8m0gdxqqzkdvgq89c6y9v3mj"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="3.3"; sha256="01y7bp7nj0p47n69pxvj2gyrcvgj617ymhwhxlqp0jrkns1wqjy5"; depends=[boot cocor CTT irtoys ltm sirt]; }; subscreen = derive2 { name="subscreen"; version="3.0.7"; sha256="0vxwyx08bjha7vgv3lcgigar43f74fr3w7wna6z8viawh3bc7k96"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr ranger shiny shinyjs shinyWidgets]; }; @@ -17253,6 +17365,7 @@ in with self; { suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; sudoku = derive2 { name="sudoku"; version="2.8"; sha256="1z130cx30wdqch0a4f27aa9v3v29hx6d5zav308abx42s4ilysbs"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.2-1"; sha256="1y3li64xqag2ia8dg7q49jmlb1awl92rz6xa9zsbf0s9jman9wj9"; depends=[magrittr]; }; + sugarbag = derive2 { name="sugarbag"; version="0.1.6"; sha256="0xgazjr55cdjcxngpfasq17pc72lkg2p9jfzfpmwkjrpvsqw8dff"; depends=[dplyr geosphere progress purrr rlang rmapshaper sf tibble tidyr]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.5"; sha256="10clll3c0ws2mccdp9grz3qw75kv7ydffak2vv9ijky8n1b39qa7"; depends=[GBJ Matrix seqminer]; }; sumR = derive2 { name="sumR"; version="0.4.10"; sha256="0gijisv3bslyhflik06nc54bbg7z84a1yc97cq3d41ad1q0ch7gk"; depends=[matrixStats]; }; @@ -17273,6 +17386,7 @@ in with self; { supercompress = derive2 { name="supercompress"; version="1.1"; sha256="1kz04m37r1g4lx4y0kzjn77p3wra2rq21y93v9llikycsh6vzwp1"; depends=[FNN]; }; superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; + superml = derive2 { name="superml"; version="0.5.6"; sha256="159a80v9a1z2xq0xriqaa5xb7r5slww899vhng5l73c14615jzqw"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; supernova = derive2 { name="supernova"; version="2.5.3"; sha256="1ci1zdvxpa33xbvkh0ly5x20w0h21j1x1d9iwgrn7kgccz56vrir"; depends=[backports cli ggplot2 lifecycle magrittr pillar purrr rlang stringr tibble vctrs]; }; superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; @@ -17297,7 +17411,6 @@ in with self; { survELtest = derive2 { name="survELtest"; version="2.0.1"; sha256="03jnj88z45iw9v1628bz99608q2jwbqw6cfsvqal2jj4392fz428"; depends=[Iso nloptr plyr survival]; }; survHE = derive2 { name="survHE"; version="1.1.2"; sha256="17hdhwkzyrkk4ijyscnv9644iinxvc566n84zq2490hfvlsk6nql"; depends=[BH dplyr flexsurv ggplot2 Rcpp RcppEigen rms rstan StanHeaders tibble xlsx]; }; survIDINRI = derive2 { name="survIDINRI"; version="1.1-2"; sha256="1cl2dlxya3aqhmj7gwk5s5wfdrk5in8if04hm0bjg4ivcrw4m9r6"; depends=[survC1 survival]; }; - survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; survMisc = derive2 { name="survMisc"; version="0.5.6"; sha256="014cf7sfndmib9jmj0p3h67sr750k2pvw7m865zwdpvlqddi44fr"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; survParamSim = derive2 { name="survParamSim"; version="0.1.6"; sha256="1dmxvdz1pp6k9rpln8w1pq1bkjmjx2jhym526c9bkl48xnla1nbw"; depends=[broom dplyr forcats ggplot2 lifecycle magrittr mvtnorm purrr rlang survival tibble tidyr]; }; @@ -17310,8 +17423,8 @@ in with self; { survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.1"; sha256="1b6nj2ikf931926a47a441icbrfjcadwxxnkc35c9yz8nw1kn1ii"; depends=[]; }; surveil = derive2 { name="surveil"; version="0.2.1"; sha256="1b7nwp3rmvbnaw6l2pjhfia864cirpfhn2smib5c4zl2h9282rjk"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; - surveillance = derive2 { name="surveillance"; version="1.20.1"; sha256="0yz7jmavgybaxrhi6hczppk7j3im250994w59xn2nm5w2ll5i87z"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; - survex = derive2 { name="survex"; version="0.1.1"; sha256="1ppjdnlprf2kqhlsclmx1qvyps29v772nx47f49khasm9am9pk9b"; depends=[DALEX ggplot2 gridExtra ingredients pec survival]; }; + surveillance = derive2 { name="surveillance"; version="1.20.3"; sha256="0r6vx40kzw3fcw44vd5cj2bd1vcc0j1q9khmwrmp52riyc8xmzip"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; + survex = derive2 { name="survex"; version="0.2.2"; sha256="1ch3q44rwilbw52s50yfzi98q3s8r0a660z6v8w16i71s2yfb90g"; depends=[DALEX ggplot2 patchwork pec survival]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.1"; sha256="0ci65w3w06kwab98q9gb7nb7smq9r25qfibkgfilsg1i5li6p9h5"; depends=[survival WriteXLS]; }; survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; @@ -17324,10 +17437,9 @@ in with self; { survival_svb = derive2 { name="survival.svb"; version="0.0-2"; sha256="13lipzn1cnkd5dcg8n69cdghycifiin3jnjvgzsv0g60l1jk0lmp"; depends=[glmnet Rcpp RcppEigen survival]; }; survival666 = derive2 { name="survival666"; version="0.5"; sha256="11vs546lrbxnhpxjmwxhh2hnp6kwcf4hzgigi3x9525hr8n9cy01"; depends=[ggplot2 survival survminer]; }; survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.3.0"; sha256="0s4cihmjhg94zcbvr7c1pxdjyc0rpbqlw1gni5xkdhqp4lnqmygf"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; - survivalMPL = derive2 { name="survivalMPL"; version="0.2-1"; sha256="1rskhawhpkzi3laq452kgr1740p6998z7c7p95f2023ymkdm4rxv"; depends=[MASS survival]; }; + survivalMPL = derive2 { name="survivalMPL"; version="0.2-3"; sha256="1dxn9s68f545chqg1kfdys0gr419w259b1156g92mql899fm77sq"; depends=[MASS survival]; }; survivalMPLdc = derive2 { name="survivalMPLdc"; version="0.1.1"; sha256="1wqlzpwm1p7nq19l3d7c93zv6fnn0b1w24kak9zwsgyhar3f5lv9"; depends=[copula matrixcalc splines2 survival]; }; - survivalREC = derive2 { name="survivalREC"; version="1.0"; sha256="1c4qvk2qd5ffn4kfkglwn3iyisnd2y0hzzn92c57vb94d4h057hx"; depends=[KernSmooth survival]; }; - survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; + survivalROC = derive2 { name="survivalROC"; version="1.0.3.1"; sha256="0p6irjs8a9xxgxwax0y9fzapcib237if3iy8g6lzv793mzmsyx41"; depends=[]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.13"; sha256="0d5bfmvfwf3i1iim5cjrqq5vlja92znpzv1csrk488rb582zaza7"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; survivoR = derive2 { name="survivoR"; version="2.0.1"; sha256="120li3dnbvsvbs54s7vmz9hhcszygz4d2famba3pv343v89l345b"; depends=[ggpath ggplot2 glue magrittr prismatic stringr tidyr]; }; @@ -17350,17 +17462,16 @@ in with self; { svTools = derive2 { name="svTools"; version="0.9-5"; sha256="040wr8cr2p35x6pr515bprmsw8ysajx4df5f2njz3ily61xf9szi"; depends=[codetools svMisc]; }; svUnit = derive2 { name="svUnit"; version="1.0.6"; sha256="08nmlbdrmmz04ira30721l99i74w07w2avdr4pypswf2sq1nqgi6"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; - svars = derive2 { name="svars"; version="1.3.9"; sha256="1i9wnfrgr9x6qfqhl9bc4wiz4wxmzjfcmg7wvy3zjrfszmibaf78"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; }; svd = derive2 { name="svd"; version="0.5.2"; sha256="0rz0alvj1aza7dncvc948s5kmjvggy8drr08hi5fz1q4s1znwn0g"; depends=[]; }; svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.4"; sha256="1iglgwbyxf5q4716h9ba2cfmxh1qq16zwy54krnawg4580v8ydh2"; depends=[htmlwidgets]; }; - svgViewR = derive2 { name="svgViewR"; version="1.4.1"; sha256="0xppvrfl7q3viahvwvmn498wli74ldwijapf6n432gvc4phmy7wi"; depends=[Rcpp rjson Rook]; }; + svgViewR = derive2 { name="svgViewR"; version="1.4.2"; sha256="0xlz86knvxxh96yr1z3px3lm0myaq6csqig11g8rrdg46lxnih3n"; depends=[Rcpp rjson]; }; svglite = derive2 { name="svglite"; version="2.1.0"; sha256="16wwhfmp9agdz9azslgd8qs77fllhdp6p0m304qfh2p8qy8gah5d"; depends=[cpp11 systemfonts]; }; svgtools = derive2 { name="svgtools"; version="1.1.0"; sha256="1ipwj3qw8c62381b6yf5mazhg2a3ssddijqrq3bac57i8i6m8az1"; depends=[magick rsvg stringr xml2]; }; svines = derive2 { name="svines"; version="0.1.4"; sha256="1piin3nn0z5k9gilcq4lcqj86dqlfm9xqp87cslwypkfkkhn2aia"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; - svrep = derive2 { name="svrep"; version="0.3.0"; sha256="104mwkappywssmcfygvxrcfsi4m7jhyak10z7c78if4f7v3h3mfa"; depends=[survey]; }; + svrep = derive2 { name="svrep"; version="0.4.0"; sha256="04mvhmkhavz1a96y5r8sr8fc8cyxi9hq0cbrsilfdpy096dkksgc"; depends=[mvtnorm survey]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="3.0.0"; sha256="1jn3dbaqpgydkwf9y7hq97nva26vvrpl9zmw2bw4ky1qgzgz1ypb"; depends=[gtools Matrix]; }; svyVGAM = derive2 { name="svyVGAM"; version="1.1"; sha256="0y5bwp961g9z4p18igbvbh2wrzpl3ivipi305qny7a4rlpbxcfph"; depends=[survey VGAM]; }; @@ -17374,7 +17485,7 @@ in with self; { swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; swdpwr = derive2 { name="swdpwr"; version="1.7"; sha256="0mljayrs629d0pxbd9lzzplvs31i33fqb0bfb01ryvwyv0ckwjx9"; depends=[spatstat_random]; }; - sweater = derive2 { name="sweater"; version="0.1.6"; sha256="0ij9mryxl9cjl4yxycn8yxp1qvj5s897h3ay5zz6j4cnpm65s7hv"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; + sweater = derive2 { name="sweater"; version="0.1.7"; sha256="03fq3vbcvbv8fwdp6smxyzb5gj8qp03qf88l99f2na9bax302sr3"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweep = derive2 { name="sweep"; version="0.2.3"; sha256="1705mcp9p5h50ifqjjwx61z5wl5izv889nxcgdkx1i0dlcr61l2a"; depends=[broom dplyr forecast lubridate rlang tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; swephR = derive2 { name="swephR"; version="0.3.0"; sha256="0fk5wih3i5vpkcc9y1n30xwc1hyqgfgnad9jkdgdx0m31pn1y9j5"; depends=[Rcpp]; }; @@ -17383,6 +17494,7 @@ in with self; { swfscMisc = derive2 { name="swfscMisc"; version="1.6"; sha256="1nsr4n4dqm2jhmf3z2yg9x63x394cank70i41zrp2m0sd9wqprgk"; depends=[dplyr ggplot2 ggrepel HDInterval kknn magrittr mapdata maps rlang sf spatstat_geom tibble tidyr]; }; swgee = derive2 { name="swgee"; version="1.4"; sha256="1a6zr4nkpj52b0rk01qbwzi8y0c798wlxzw69wyyv576k148rgfq"; depends=[gee geepack mvtnorm]; }; swimplot = derive2 { name="swimplot"; version="1.2.0"; sha256="02w1l67hvz8gha8gcqxcvcr8g2azidn6bvw76h3k75p9rvq8sgpp"; depends=[dplyr ggplot2 tidyr]; }; + swipeR = derive2 { name="swipeR"; version="0.1.0"; sha256="15n4kgiq1v2kjdkcimi0cs1psj0224598px1yw2xhlsjvb6x6p1f"; depends=[htmltools htmlwidgets]; }; swirl = derive2 { name="swirl"; version="2.4.5"; sha256="0cqyn2rnqfkb2wza4zdr1kcms5l0igbq79xh5i7765agdday2z9w"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.3"; sha256="1bpg6yz2adgspjlwsf2q83j1bq0iyvp9938smgc41861nsclngwr"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; }; @@ -17392,10 +17504,7 @@ in with self; { switchr = derive2 { name="switchr"; version="0.14.5"; sha256="1fxn75kgnmq9q4jic4jrqvljylwv9fa25nbhyqm4vmlx5wvissgp"; depends=[RCurl RJSONIO]; }; switchrGist = derive2 { name="switchrGist"; version="0.2.5"; sha256="0ywx7sihh9q74mn0kvdcdflnks0cfybrgy1b5bvmn6ygxb3s605v"; depends=[gistr httpuv RJSONIO switchr]; }; swmmr = derive2 { name="swmmr"; version="0.9.1"; sha256="140sx0y00ngxsyn7n1l0aay7vk2jk8hf81aiwh46k761cpc5y28d"; depends=[dplyr purrr Rcpp readr tibble tidyr xts zoo]; }; - sybil = derive2 { name="sybil"; version="2.2.0"; sha256="05ccq2m4z6akslymdm2vd3x99pi9z0ha1xcnhwvwcvibhqn9hmd5"; depends=[lattice Matrix]; }; - sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.2"; sha256="0351qlvyynygjf43q93gkqzzaff3v6gynvbks1ix1mank3afn226"; depends=[sybil]; }; - sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.2"; sha256="0s8yqzn7llzby5v1p7is7qv0m8dzwf14r3m32slf898nxrs131xr"; depends=[MASS Matrix sybil]; }; - sylcount = derive2 { name="sylcount"; version="0.2-4"; sha256="1qwxag92bpyi5sjr4373divw5zfgzvj2ji99ilcssnqwi46c4w77"; depends=[]; }; + sylcount = derive2 { name="sylcount"; version="0.2-5"; sha256="0934vic6mdrgpralrfvlv7y83kc1h7df7jm37spapy370mzq50lp"; depends=[]; }; syllabifyr = derive2 { name="syllabifyr"; version="0.1.1"; sha256="1z61afxx2bm37hxvv1fl3x7ibhkp3h1ivl3k9prqzsaw4j592vfx"; depends=[dplyr purrr stringr tibble tidyr]; }; sylly = derive2 { name="sylly"; version="0.1-6"; sha256="0f03k9d15fkym14y94jb7rkh228blc76jlm7pk229b44hcbh3mmm"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; @@ -17406,7 +17515,6 @@ in with self; { symengine = derive2 { name="symengine"; version="0.2.2"; sha256="1wjw6fbphkxrha859s27rvzjp0niysssicaamw9sm8895j8k5lfk"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.2"; sha256="1h0zmmmlxd9xjfmp1lxb7rgmn5xq5rlspqrjw4nbgzw0vmdlm5gn"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; - symphony = derive2 { name="symphony"; version="0.1.0"; sha256="0pwl9ahiv0xxc7j6448cja77fvcng28gdwhhr1z0qmhjsdcxadxq"; depends=[class data_table dplyr ggplot2 ggrastr ggrepel harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; }; syn = derive2 { name="syn"; version="0.1.0"; sha256="12apdjbsazwfxizsw4dj0y3vkdjmki8dzpyv3bi9gnhpysdd1jzx"; depends=[]; }; synchronicity = derive2 { name="synchronicity"; version="1.3.5"; sha256="1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx"; depends=[BH bigmemory_sri Rcpp uuid]; }; synchrony = derive2 { name="synchrony"; version="0.3.8"; sha256="1zpxg4dkxnvafiyp0j00wig5ymj10bzfg2376x56rzpnabhg57hi"; depends=[]; }; @@ -17440,7 +17548,7 @@ in with self; { table1 = derive2 { name="table1"; version="1.4.2"; sha256="1cw85nj6w9fk66wjbyz08ya6g027cfj3brb0sx7ar0n7zyc8rhb4"; depends=[Formula htmltools knitr yaml]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; - tableHTML = derive2 { name="tableHTML"; version="2.1.0"; sha256="01bffjqi2qs66w67l5nc0imqdcaf4cky930srkd2wmvvawv85kwc"; depends=[htmltools jpeg magrittr png shiny webshot]; }; + tableHTML = derive2 { name="tableHTML"; version="2.1.1"; sha256="0xqvk4smc8z6l4vpg39y1rxkx22spx7nvdsvp6xq6x7pmbsl0m8m"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; tablecompare = derive2 { name="tablecompare"; version="0.1.0"; sha256="0cf557yi0h2y4idk8qwv0gk468pn0fhyndiy2jx28gdsz33h5p3a"; depends=[data_table glue magrittr purrr rlang tidyselect]; }; tabledown = derive2 { name="tabledown"; version="0.0.3"; sha256="0pvd9i7ycsarsp7m9hdss86vx0mdrv57iqxk8nyqixfdvrwb48pv"; depends=[data_table dplyr ggplot2 lavaan magrittr mirt MOTE psych tibble tidyselect]; }; @@ -17452,10 +17560,11 @@ in with self; { tablesgg = derive2 { name="tablesgg"; version="0.8-1"; sha256="0vkl9386qnalr5d0libqs2ihszggs0qyx6ffyjn8j8ab3kczzxhr"; depends=[ggplot2 tables]; }; tablet = derive2 { name="tablet"; version="0.5.8"; sha256="0c5gjrvr6r4vqxh2dc7v2jads48wwijvbzadxa92qzfsmxw3p382"; depends=[dplyr DT fs kableExtra magrittr rlang spork tidyr]; }; tabnet = derive2 { name="tabnet"; version="0.3.0"; sha256="04m8bg1glnhxb2pjcxnwlcwzbxvk0bskz00dkd4lyvgsq74xwmvi"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; + taboolaR = derive2 { name="taboolaR"; version="0.1.0"; sha256="1nv189d6sjjrhc1nr7xhdf22gfh1z93rlcgm2vk7kcs43avm8fwb"; depends=[jsonlite]; }; tabr = derive2 { name="tabr"; version="0.4.5"; sha256="1nkzbqy9nb6pd895glld009vmry5rnhd7h9q31s8xh97kwlwk9c2"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.4.0"; sha256="04y910lcsim551za639q80laalhncc4lxcz31y3plilnlavxjyb1"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1.1"; sha256="0396a8hla508na1hmyyhfbl8w10dbg810cln2xyhhvxi7rr223dj"; depends=[]; }; - tabula = derive2 { name="tabula"; version="1.8.0"; sha256="0nqm1100xgnr74zifscqw1hfqi4lz73fsm5xm5kbmqlf94mvk45x"; depends=[arkhe boot ggplot2 kairos rlang]; }; + tabula = derive2 { name="tabula"; version="2.0.0"; sha256="13mg0cacwx606942n40icr83yzq3px50wqfpxync0zraf6kr4zpp"; depends=[arkhe ggplot2 rlang]; }; tabularMLC = derive2 { name="tabularMLC"; version="0.0.3"; sha256="1gppzbf780ci4vrvy7rd3xa0bvwxca5f05a9xk194xv913vyd440"; depends=[Rcpp RcppArmadillo]; }; tabularaster = derive2 { name="tabularaster"; version="0.7.1"; sha256="0b8jl3bf7q0302mlnqh720qs7rllkgyg127n1h25snb34k1wc3pm"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; @@ -17471,14 +17580,13 @@ in with self; { taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; }; takos = derive2 { name="takos"; version="0.2.0"; sha256="09w9lkqhxdb26fvrsb8n16601kqpr2smplipx3lj6cdgbyhb1hqz"; depends=[baseline broom colorRamps data_table deSolve devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; tanaka = derive2 { name="tanaka"; version="0.3.0"; sha256="0lbwqz6p7kmxadjymqpfmcvz4l6gzimbk94778w4vzh9iay7dqi7"; depends=[mapiso sf terra]; }; - tangram = derive2 { name="tangram"; version="0.8.1"; sha256="1vmh3wk4vk25x6i5z9wrxdlhald406a6rfw1pivv7xrw659kaznv"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; }; tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.2"; sha256="0v86xn5rvr6c74cqhiwfxgfb4mizqlf5bqc51870na28i2ariaap"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.7.1"; sha256="1k654w5v8vc8sn0d8qj0xbdrzaqdnngff9an9mb9rjq3jyc2k2nn"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; - tardis = derive2 { name="tardis"; version="0.1.3"; sha256="0g4gam2gip6h7lim4pcamqf430m1pk4sy5spri3ysl0l8mdsxg60"; depends=[cpp11 dplyr magrittr purrr stringi stringr tidyr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.7.3"; sha256="03v2w9jk9bryrlcmzpa1y72k0kp4v0fw8mc1w1gl1kggqbkd0936"; depends=[digest dplyr fs furrr rlang targets tibble tidyselect vctrs withr]; }; + tardis = derive2 { name="tardis"; version="0.1.4"; sha256="1hfqnszhly6cfi7aii3v9nnrj3md389bflvf3igixrn4wb7mfyi5"; depends=[cpp11 dplyr magrittr purrr rlang stringi stringr tidyr]; }; targeted = derive2 { name="targeted"; version="0.3"; sha256="0h05h8pgjjab5clv501m9b2fcycspj0dc7zs72lwp15al2rikmzg"; depends=[data_table digest futile_logger future_apply lava mets optimx progressr R6 Rcpp RcppArmadillo survival]; }; - targets = derive2 { name="targets"; version="0.13.5"; sha256="08sdbl6366nqalrzx8cc0kmgkjlq2sky25bq0bziyqsy9slxlld6"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; + targets = derive2 { name="targets"; version="0.14.1"; sha256="1zf8dapdy1ds59282vy3b1s6q0ra6a8v1llp1g6xaijih4pcl3r8"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; @@ -17494,7 +17602,7 @@ in with self; { taxonbridge = derive2 { name="taxonbridge"; version="1.2.2"; sha256="1ivks3bvwyn0ybvyz6dhsx7qxnlskf4icjkgsichdv4p24w5iwb9"; depends=[dplyr ggplot2 purrr rje stringr vroom withr]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.9.3"; sha256="03rc47pf85sfxa3zdjfcixsagcjbknk9jcsi3a56lz1d0178gb9n"; depends=[curl data_table R_utils RSQLite]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; - taylor = derive2 { name="taylor"; version="1.0.0"; sha256="0w1r3vy6c03h14cxmxf938rmgmxnnhdfavivp6749xxd2qdca997"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; + taylor = derive2 { name="taylor"; version="2.0.0"; sha256="1zmih8gkkcfpydxxc4dfg3ypqs4qwbanfhckmjl9s4wl99k8q9mi"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; tbl2xts = derive2 { name="tbl2xts"; version="1.0.4"; sha256="1h54yhwbmlzgii202dcrz336d790374p213f1ba6rlm5syad88v9"; depends=[dplyr rlang tibble xts zoo]; }; tbm = derive2 { name="tbm"; version="0.3-5"; sha256="0qq6zjz37j31jrw0lxsf6vgxwhs8swkqg48jwc320vpz1qjqj7xv"; depends=[basefun coneproj mboost mlt sandwich variables]; }; @@ -17507,7 +17615,7 @@ in with self; { tcl = derive2 { name="tcl"; version="0.1.1"; sha256="01klrzvw7vc0iwqpmcikgqm8jx3g7536r5f8gb6vwcik912maxnl"; depends=[colorspace eRm lattice ltm MASS Matrix numDeriv psych psychotools]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.5-2"; sha256="12vg9q35srddjidrn3q955xybn6ldraya35s4955ypj61arp89j9"; depends=[]; }; - tcpl = derive2 { name="tcpl"; version="3.0.0"; sha256="1d6536wdqjy7j9v3zcg1piga6gnjkrjslrn2zw30nx195cwc8ysj"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; + tcpl = derive2 { name="tcpl"; version="3.0.1"; sha256="1xsw532xdf4xksrggsszwbh7rj818hvi9xmndhdhdk6wq6bg7xh4"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; @@ -17524,6 +17632,7 @@ in with self; { teamcolors = derive2 { name="teamcolors"; version="0.0.4"; sha256="0mqrjnkpxzv7armgbl9nwz42pjb9l94yml5lp41rhjj9414b2729"; depends=[dplyr ggplot2 tibble tidyr]; }; teamr = derive2 { name="teamr"; version="0.0.1"; sha256="01gngws8lf093598wlzrv4ls74avsli6ij33v1plqgc0znyaw4s2"; depends=[httr jsonlite R6]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; + tehtuner = derive2 { name="tehtuner"; version="0.1.1"; sha256="1dr3xrhwszv75w8iz7yy44a7kxac5n1dirjhjfqgvjz529m8ycqb"; depends=[earth glmnet party randomForestSRC Rdpack rpart stringr SuperLearner]; }; teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; }; telefit = derive2 { name="telefit"; version="1.0.3"; sha256="0z6dr4ni00dyagbkzr3c7l4h2g23w3bfj99a9755vmrzyy6r45iq"; depends=[abind coda cowplot dplyr fields foreach ggplot2 gtable itertools mvtnorm raster Rcpp RcppArmadillo RcppEigen reshape2 scales scoringRules sp stringr]; }; telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; @@ -17540,22 +17649,23 @@ in with self; { tensorA = derive2 { name="tensorA"; version="0.36.2"; sha256="19wwh654qlja4z1n7afjpzsrrm53p8ddysa2vra5mdnkddb4g2cf"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; + tensorFun = derive2 { name="tensorFun"; version="0.1.1"; sha256="0ij3dshnj448scws6d2pdw2ik34hbhq9mksmllgy0g8l257a3x8d"; depends=[ClimProjDiags MASS psychTools]; }; tensorTS = derive2 { name="tensorTS"; version="1.0.0"; sha256="0nbks7djd4wggn33f39zc2zacz6z4dpvgk9fj9a90kcmyiw0rckl"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; tensorflow = derive2 { name="tensorflow"; version="2.9.0"; sha256="12c6ndxx4g6fqjakpzp9pgl29ghswhqyr6q9jahpk0cawizh2znj"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="4.0"; sha256="0pb512v3gahgv3qc31i5v2jg8wixi6ps3p920sq5dgpfrig9hg2q"; depends=[MASS pracma speedglm]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; - tergm = derive2 { name="tergm"; version="4.1.0"; sha256="0l2a0j4bz4q101hqhcn2jnv5j4ny1cjcay2c8bcq58akifs3bzxb"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; + tergm = derive2 { name="tergm"; version="4.1.1"; sha256="09axlhf5n2jwc84ih05ywz8addqfai7g1cdlzhsbmjnsn1d89kai"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; tergmLite = derive2 { name="tergmLite"; version="2.6.1"; sha256="03dr3bfi5ywavfijkc6gmci8i1kmbsh26awhl7748mn9wcsgs2pc"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.5"; sha256="1ig1hvyv18d1x19jmvkg66m6nn8kdlffj5hx70vzd4sxz68j2k0v"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; terminaldigits = derive2 { name="terminaldigits"; version="0.1.0"; sha256="0vj7pylr410wi59qj2313iximsyl0v9ffg7z9gcfg720g5zrvfkm"; depends=[discretefit Rcpp]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.6-17"; sha256="00mwigymvsqf7r3swbkdw8fwqzr05ddk84fhyhr16lfa4118z26v"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.6-47"; sha256="13n6rxrrkn4wgcgq2kyyhn5nxw099hy9fbzxg78waxa6cxapwpmh"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; - terrainr = derive2 { name="terrainr"; version="0.7.1"; sha256="0marwkn3mzrrm8xghc3f2fnxgbcfvzq76lpac92gahhvfmxhjp39"; depends=[base64enc ggplot2 glue httr magick png raster rlang sf terra unifir units]; }; + terrainr = derive2 { name="terrainr"; version="0.7.2"; sha256="1w91vdn859m1rxg5av3gix5rff1wndrkkn13nvc1ygqgwd25hc76"; depends=[base64enc ggplot2 glue httr magick png raster rlang sf terra unifir units]; }; tessellation = derive2 { name="tessellation"; version="2.1.0"; sha256="0pbdf18pz1j18x7lsz306x87p0d339a0y1nacynsqly0706g1s3d"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; - tesselle = derive2 { name="tesselle"; version="1.1.0"; sha256="11afr475gnaa0g2f0a2gx9zcsaqbfw5rfxy27f4pllccqapl6hys"; depends=[arkhe dimensio folio kairos khroma tabula]; }; + tesselle = derive2 { name="tesselle"; version="1.2.0"; sha256="1kbz26rinxwd8h3kazdalkb32l1hl623r9f3x072j857g2x9v5my"; depends=[arkhe dimensio folio kairos khroma tabula]; }; tesseract = derive2 { name="tesseract"; version="5.1.0"; sha256="1ynd665mbfklqahzkjfbl6ja1djybgcmc71dpg5dxxjc3ny7rbkd"; depends=[curl digest pdftools rappdirs Rcpp]; }; test2norm = derive2 { name="test2norm"; version="0.2.1"; sha256="1llzvdggjvc72qwkv9iiqxx7prj3hnr9bqpwsib4qmfpmmxsif37"; depends=[mfp]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.2"; sha256="144bni3dg7bdmxnxyyal94j1nddqshgys9wfkdcc262n8y3v13i5"; depends=[]; }; @@ -17567,7 +17677,7 @@ in with self; { tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.1.5"; sha256="1z5pyp4cmyn8ms243zav5wfbwbh45zzq432m1g1xyv904sa6pxd8"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.1.6"; sha256="1bndjkwv6f9x3a0wklwnf7bymn655yhw6cmazb285hbmci0qrjx7"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; @@ -17580,7 +17690,7 @@ in with self; { text2map = derive2 { name="text2map"; version="0.1.6"; sha256="1lqhk5dz7g4mc63644hbb60hwgzsyl75i8ckz354hvagnd84xwg1"; depends=[ClusterR doParallel dplyr fastmatch foreach igraph kit magrittr Matrix qgraph rlang rsvd stringi stringr text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="0.1.6"; sha256="0rnb44d5v7b90p78bwcg5zqz1xrfpr34ad6pgc49ll0pb9q9ijss"; depends=[corpustools dplyr ggplot2 lifecycle magrittr stringr tibble tidyr]; }; text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; - text2vec = derive2 { name="text2vec"; version="0.6.2"; sha256="1as58w1hb6h0hpncwcr2nx9a8bj5fy6bfllx2a8ck8hal764iach"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; + text2vec = derive2 { name="text2vec"; version="0.6.3"; sha256="1hi7ydb7xkgbff4lwnnz1biyl8m90w16hn3x5rrzvscvm53sj4y7"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; textcat = derive2 { name="textcat"; version="1.0-7"; sha256="1m31alkzy13acgf4ahnzpbyazflhpmry369vqdvn5f86wcsls833"; depends=[slam tau]; }; @@ -17617,6 +17727,7 @@ in with self; { tfprobability = derive2 { name="tfprobability"; version="0.15.1"; sha256="0as8lciyh463x91gv290zzp9sjsrrvgcwiliyi9y5dp0qbj4505x"; depends=[keras magrittr reticulate tensorflow]; }; tframe = derive2 { name="tframe"; version="2015.12-1.1"; sha256="1yff22jzh1mp73zbz2mav6z8m42lylfjhb8dgxj4337fv3if3i13"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2022.3-1"; sha256="1axrvfigdmwmas0q3qlmk4m7jybqcssjgmyww2knp8jw7kp212vy"; depends=[tframe timeSeries]; }; + tfrmt = derive2 { name="tfrmt"; version="0.0.1"; sha256="1b23ylm7ad4yhcxsm1qgv9lk8nf9bivws0h2z9cxpnrcjc309sw6"; depends=[dplyr forcats ggplot2 gt magrittr purrr rlang stringi stringr tibble tidyr tidyselect]; }; tfruns = derive2 { name="tfruns"; version="1.5.1"; sha256="1xk7dl51xd1h54798xwycvxmn77jv80in61hanm36zk0024wpxg8"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; }; tgamtheme = derive2 { name="tgamtheme"; version="0.1.0"; sha256="1igv6vl3vqqx8pbvj5qr21cjphpizq3b5sjss359bhw2gy747npl"; depends=[ggplot2]; }; @@ -17625,11 +17736,11 @@ in with self; { tglkmeans = derive2 { name="tglkmeans"; version="0.3.5"; sha256="0ldbq2pjmvw8m698s9zvvk38qiysz44r6s8v9bs8i7i7vjpwj62y"; depends=[doFuture dplyr future ggplot2 magrittr plyr purrr Rcpp tgstat tibble]; }; tgp = derive2 { name="tgp"; version="2.4-20"; sha256="00yw8l05b49qg79gydcv4f4snl92jm7fyy3i5y6vgxcj6jl101g9"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; - tgstat = derive2 { name="tgstat"; version="2.3.18"; sha256="0bxg4x0m6a7i8ahpwmh79g60605q0z5q60wbajdzc4zc96k7hp8k"; depends=[]; }; + tgstat = derive2 { name="tgstat"; version="2.3.19"; sha256="0nms7wzm2mn04q91709z7c1r16kxkw566zv2qglvns5dri905bs7"; depends=[]; }; tgver = derive2 { name="tgver"; version="0.3.0"; sha256="1kw622xcjhca7k178q3wpmjyidjifvql9xpg2ai8842qhgz14bm0"; depends=[callr geojsonsf plumber]; }; thaipdf = derive2 { name="thaipdf"; version="0.1.2"; sha256="03h03bmw6q60jc80z14k7hpli0knhfbmhns0inbz0nhvisfzmsbq"; depends=[cli fs rmarkdown]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; - theft = derive2 { name="theft"; version="0.3.9.6"; sha256="14bynxl3asxh73g42wg3hylzc7fjqxnz1q8ss9fy8j99y3s3hpph"; depends=[broom caret dplyr fabletools feasts ggplot2 janitor plotly purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; + theft = derive2 { name="theft"; version="0.4.1.1"; sha256="11gpg044ypfnwvrb7y0fgm1ammh8w03yik8xb26kjax5xa74pcvl"; depends=[broom caret dplyr fabletools feasts ggplot2 janitor plotly purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; themis = derive2 { name="themis"; version="1.0.0"; sha256="0ink3ixal4942w1sbqjdhxpl7j0aqvksyiiz9ddd72wk30cvpwaw"; depends=[dplyr generics glue gower hardhat lifecycle purrr RANN recipes rlang ROSE tibble withr]; }; @@ -17639,7 +17750,7 @@ in with self; { thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.16"; sha256="104n4g70fk209b721qchrbv95dwxzq6vvhz36asdk40kzzacdzp2"; depends=[assertthat cli devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr withr]; }; - this_path = derive2 { name="this.path"; version="1.0.1"; sha256="0bvz5sl2im9720068bglclwahv75pns2qck6306hyfvrzzga2sal"; depends=[]; }; + this_path = derive2 { name="this.path"; version="1.1.0"; sha256="0mzb8scdv1f0ppc2hcpkbwn89iqrvf3asncch974q1zfy8q36xbj"; depends=[]; }; thor = derive2 { name="thor"; version="1.1.2"; sha256="0r4kgzbydjb7z0j808g5zdkx5wmbqncqg453bqm4ylafpj5z79kv"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; thredds = derive2 { name="thredds"; version="0.1-2"; sha256="0428j1c1zfc42kydsbnvpznwprq62nwxh41i7pf4873g3canmjkx"; depends=[httr magrittr R6 rlang xml2]; }; @@ -17654,11 +17765,13 @@ in with self; { thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.1"; sha256="1qac1kg441x6fx3nxlhj1w1q7b3isivw6hzy7np3g1ics3kxpw8b"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; tibble = derive2 { name="tibble"; version="3.1.8"; sha256="1spdbk5s0wlipfq8jc08p2mk5fq2ql9hm8iwwlfzdlhqbl3hxwxc"; depends=[fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.7"; sha256="0l2aaqzf087phyxblkskqfpica12bfama6wyvxkdgbiwmzf6lbzc"; depends=[assertthat dplyr glue hms lifecycle lubridate pillar purrr Rcpp rlang tibble vctrs zoo]; }; + tibblify = derive2 { name="tibblify"; version="0.3.0"; sha256="1hir7rb0zn9cz2yjfrg17is0ryzzxfxsan0sij0c0dh9v171cp0w"; depends=[cli lifecycle purrr rlang tibble tidyselect vctrs withr]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.1"; sha256="0ka7zd857xfqb5afn0psn0yzfv2qjb0ddxfyiq6aggbnla5qc3qj"; depends=[]; }; - tidyBdE = derive2 { name="tidyBdE"; version="0.3.0"; sha256="1h134amkmcz3k5yl73r818hp1z5fsmiiv6bkqcn3fpn4bi9rh58w"; depends=[dplyr ggplot2 readr scales tibble]; }; + tidyBdE = derive2 { name="tidyBdE"; version="0.3.1"; sha256="1c3c4yj95avjmnc11gn1dcbgmzz3kgmj5ahl4ip8vp3ap4ik3c89"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; tidyCDISC = derive2 { name="tidyCDISC"; version="0.1.0"; sha256="0x84vljzzahhc4a8r7cnahvh2vgbx1a68sr1vm48gckis271isj7"; depends=[cicerone config dplyr DT GGally ggcorrplot ggplot2 glue golem gt haven IDEAFilter plotly purrr rlang rmarkdown shiny shinyjs shinyWidgets sjlabelled stringr survival tidyr timevis tippy]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.6"; sha256="1w6fr4q137ar6557a8x1jpmfmlsga59621jwq0sf37bnn535i4gw"; depends=[]; }; + tidyDisasters = derive2 { name="tidyDisasters"; version="0.1.1"; sha256="071hr4dmk5pq8m8b58b8zcz5kpgxnqw2l4rb2vkq1zhsrk9ynxmg"; depends=[]; }; tidyEmoji = derive2 { name="tidyEmoji"; version="0.1.0"; sha256="03amap4lik63nqdznncg8ymw74avmrhci36gy8ckwwskrn9gqw93"; depends=[dplyr emoji purrr stringr tibble tidyr]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.8.1"; sha256="19gpp8p3ms60qzny26vx8h7x4zl495ynrfrvf1nndhm2njbx6i4m"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr patchwork purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; @@ -17670,8 +17783,9 @@ in with self; { tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="1.2.3"; sha256="1zrjbxkzn1swkpx00krjvdpihpkbax4mm9fw81p0bq90dsxmig13"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="1.3"; sha256="0hh5inc1nlw4khckdvy1kb243z8rd8bhbkvxjmpqys657bw52v39"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.3"; sha256="1clpjyvqv6xhv7n64xh411x867fnn581qckzcwn18xbbbs56k6nn"; depends=[htmlwidgets knitr lubridate magick magrittr rlang rsvg stringr testthat]; }; + tidyclust = derive2 { name="tidyclust"; version="0.1.0"; sha256="1b6is25xsip3x6ps5x3n8g8jmy7brq0rjcf5w4rdlqcrn1f43v32"; depends=[cli dials dplyr flexclust foreach generics glue hardhat modelenv parsnip prettyunits Rfast rlang rsample tibble tidyr tune vctrs]; }; tidycmprsk = derive2 { name="tidycmprsk"; version="0.2.0"; sha256="1smcjicx7xz07iagzv2a87kc9q0j2sgpnakhv7dc18zw2ndpls1q"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.2.1"; sha256="1h1xixa7fbijp1iifpwl689b1pz1vvpy7v4sc9wnkqgw0q31b3iy"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; @@ -17681,6 +17795,7 @@ in with self; { tidydr = derive2 { name="tidydr"; version="0.0.4"; sha256="0ws4z5ldz7wyhxn7h5gf8j4p3srvr5dfr6xxrf1rymx1iz9pd6sv"; depends=[ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.0"; sha256="0cwk6clah4sapbmfl5vvcv6di39azxb07z73pypnqx4gd32kk5q7"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; + tidyfit = derive2 { name="tidyfit"; version="0.6.0"; sha256="0jdjz20rw3r47w1h14zx5pfiynr0fnlqwbv1bkn42aqjzm6jdfgh"; depends=[broom crayon dials dplyr furrr magrittr MASS progressr purrr rlang rsample tibble tidyr yardstick]; }; tidyfst = derive2 { name="tidyfst"; version="1.7.5"; sha256="07sy6yyjpb0qkn8qhc4d228xxihjqrqw42g5afz5ai3h530qhj89"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.4.5"; sha256="0l6ixaqj356q319ms0bf655f530cgiia9saqdx9lryaf0b6i2hxb"; depends=[data_table fst stringr]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; @@ -17689,7 +17804,7 @@ in with self; { tidygeoRSS = derive2 { name="tidygeoRSS"; version="0.0.1"; sha256="0bppkwbxmm8ps1cnrhzxkzm2pbi3s5bfiwx8fcrp31x81jl61w1x"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang sf strex stringr tidyRSS xml2]; }; tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.5"; sha256="1ffj8ka5miv3jnds7fdrkcqdc3m2w1ab724z9m10biky213skqka"; depends=[dplyr httr jsonlite lifecycle progress tibble]; }; tidygraph = derive2 { name="tidygraph"; version="1.2.2"; sha256="0w34jfldjkynbkyinmi1vdrfjhjrs47hm599mbnx4sxmnpbclmfm"; depends=[cli cpp11 dplyr igraph magrittr pillar R6 rlang tibble tidyr]; }; - tidyhydat = derive2 { name="tidyhydat"; version="0.5.7"; sha256="00jrczg2355pvbrbf50pn8b1v89nc4ir78bjpbn91il45iq05yc0"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; + tidyhydat = derive2 { name="tidyhydat"; version="0.5.8"; sha256="1bk3a0cgb0311xbni52zrpb7fa4vgdi022g7rap2af961fcbl6bz"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.1"; sha256="1rx5ncp20j9mhcziyqb0vgfq9061qylgvfwz27dsyz58r8fygwnq"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; tidylda = derive2 { name="tidylda"; version="0.0.2"; sha256="1zwy94gpr43dc6ld3rjmr5rkapmxji6kd3p363zl03wn5qf3wbws"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; @@ -17702,7 +17817,7 @@ in with self; { tidypmc = derive2 { name="tidypmc"; version="1.7"; sha256="1fijlvdiw4vwm34wizm4xlm0x10vvpkldzk7rrla44apq7y2w3yq"; depends=[dplyr readr stringr tibble tokenizers xml2]; }; tidyposterior = derive2 { name="tidyposterior"; version="1.0.0"; sha256="19cyyhh417i5xcchb8kq3iycaf4y7aznr7y9r004h2k2vk3svc86"; depends=[dplyr generics ggplot2 purrr rlang rsample rstanarm tibble tidyr tune vctrs workflowsets]; }; tidypredict = derive2 { name="tidypredict"; version="0.4.9"; sha256="0x0r36zvny4rqgndx7iqh39yhr53gl4d8wd8wpvdcgg35q6z02z2"; depends=[dplyr generics knitr purrr rlang stringr tibble tidyr]; }; - tidyquant = derive2 { name="tidyquant"; version="1.0.5"; sha256="04cxaa661qfr5qz7lv9gjxswm0wh2p70xrdn3rma6wp92r4837mm"; depends=[alphavantager curl dplyr ggplot2 httr jsonlite lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr riingo rlang stringr tibble tidyr tidyselect timeDate timetk TTR xts]; }; + tidyquant = derive2 { name="tidyquant"; version="1.0.6"; sha256="0p1c9wzg4i84ajxd3lq4j1pvp24ni1kg6jhvlrjnhczwzjs8xjvc"; depends=[alphavantager curl dplyr ggplot2 httr jsonlite lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr readxl riingo rlang stringr tibble tidyr tidyselect timeDate timetk TTR xts]; }; tidyquery = derive2 { name="tidyquery"; version="0.2.3"; sha256="1xkcwccwc58140zdzwv6ip98c5vxjf67y7cbghvdzv2nx5agrhq9"; depends=[dplyr lubridate queryparser rlang stringr]; }; tidyqwi = derive2 { name="tidyqwi"; version="0.1.2"; sha256="16f0c2mdx6aiji6i7237kpc9awqdgrg6rhs408w6ag28dhxpgwlv"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; }; tidyr = derive2 { name="tidyr"; version="1.2.1"; sha256="1bv1rvnbbfdqf78qfbawq3yxjhjfdy0mgcla6b17bp336rnpcwb9"; depends=[cpp11 dplyr ellipsis glue lifecycle magrittr purrr rlang tibble tidyselect vctrs]; }; @@ -17717,8 +17832,8 @@ in with self; { tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; tidytable = derive2 { name="tidytable"; version="0.9.1"; sha256="0daw83qjv6qdb45f297fv9rzzx37nji0jdc5p51bwv8azz9bdy2z"; depends=[data_table glue magrittr pillar rlang tidyselect vctrs]; }; - tidytags = derive2 { name="tidytags"; version="1.0.3"; sha256="04vz4zxnhnr9as1lwwi7mka7asjk557271iibdf67j02lcxj7zp1"; depends=[dplyr googlesheets4 rlang rtweet stringr]; }; - tidyterra = derive2 { name="tidyterra"; version="0.3.0"; sha256="1sn6nw1lhvs98qca27m9cbvb90injkvaj6anvq8k2iz413awdw5c"; depends=[cli crayon data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; + tidytags = derive2 { name="tidytags"; version="1.1.0"; sha256="1416kkd9ibi4l5xc1wfx22lhb0w6fi3g8dq2lp746w6kqlqbiqpz"; depends=[dplyr googlesheets4 rlang rtweet stringr]; }; + tidyterra = derive2 { name="tidyterra"; version="0.3.1"; sha256="16zw7zw17a2qh777nhv8iyzq5g7hxp4hqh3cb9lhmrscdfg9r5qw"; depends=[cli crayon data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; tidytext = derive2 { name="tidytext"; version="0.3.4"; sha256="0mk75wdiy4mixj1xlksw9ns4ajlj8ak90sgchjcg1zb90qp7gg56"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="1.4"; sha256="12rhl9mb2hqwwad9sxa7lxyq012qhs9ga7y8ggigdq6nihmlqnrj"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr rlang sf]; }; @@ -17727,7 +17842,7 @@ in with self; { tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.2"; sha256="00xlbmgg8779ypqcrdgn56lyklqknhh3pmqfc49f84xa5hrkyjfs"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="1.3.2"; sha256="0qfgq4p2aq95j39xd5kcing2cacy7rzy7f6zf0bnpsa95svziyrp"; depends=[broom cli crayon dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyvpc = derive2 { name="tidyvpc"; version="1.4.0"; sha256="1gcid4n21nkm7z6a91vnj08rzjhzvi9r4nvrgawad6s1grika8q9"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; - tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.4"; sha256="1cw71d8zs399xmdyi0xjb8h6r6wc55kp9zys1rffqr3nrxalmr0w"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis vctrs WikidataQueryServiceR WikidataR WikipediR]; }; + tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.5"; sha256="0fy1s36f6nsxxnyc5jb35r3mxzxhq5qcj71kv0d3avnfahhcjmgc"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis vctrs WikidataQueryServiceR WikidataR WikipediR]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.8"; sha256="05hkjwlv88ln0psqk5r8p2i4j6g3c3yfw2wmm73wcylcv33lh79h"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-11"; sha256="0xgc7vyndxxahfhc2qqzmwi56bnfyl0pn72l820jz5sd24aymhxq"; depends=[]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; @@ -17735,10 +17850,10 @@ in with self; { tigger = derive2 { name="tigger"; version="1.0.1"; sha256="130iwg2ds4j56a9ndg1p7qv4s6qbbahmm9fwmy6iak02ds1r0zyl"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; - tigris = derive2 { name="tigris"; version="1.6.1"; sha256="1cid3cpjlc56mskyx0phd7h969jihxbdkpmly08cq2qjyyiqszlj"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; + tigris = derive2 { name="tigris"; version="2.0"; sha256="0fbhq2jznwxnvqk2zndnp923az8kvbq667i15m5xx9lq42zfzwix"; depends=[dplyr httr magrittr rappdirs sf stringr uuid]; }; tiktokadsR = derive2 { name="tiktokadsR"; version="0.1.0"; sha256="17x6nxp88iji376qhvvkgxyfcbxz9bvfgv9kmhiznlhq64srdjfs"; depends=[jsonlite]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.16.0"; sha256="1025cvsxb128j5yky5pb57sjkixhy1j4gf5k1f6a8nj48ygqbf6p"; depends=[nanotime Rcpp]; }; + tiledb = derive2 { name="tiledb"; version="0.17.0"; sha256="0s7fs80x4alzl0z1ssxzcjm6ydy71qk4bpsrhqg8wi4kmxzfmqyr"; depends=[nanotime Rcpp RcppSpdlog spdl]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.5"; sha256="02sxc70s8v5b5lf1fpv1ig1hmpkamsmzbgpk6zds504gh9kz7qxy"; depends=[png raster rgdal sp]; }; @@ -17746,27 +17861,27 @@ in with self; { timbeR = derive2 { name="timbeR"; version="2.0.1"; sha256="01lpx4pk22k9j4sbbhr9z7r6spfdrfazpxsyp7cxndrswa8m83zq"; depends=[cowplot dplyr ggplot2 magrittr miniUI shiny tibble tidyr]; }; timbr = derive2 { name="timbr"; version="0.1.1"; sha256="154ybky7bq3y5d9945yk36lqkl2kf6yc2x8m6izc0jdnqhydlxlp"; depends=[dplyr memoise pillar purrr rlang tibble tidygraph vctrs]; }; time_slots = derive2 { name="time.slots"; version="0.2.0"; sha256="04qh8cgk3ixvvc67m2hal935m5kisq2n67cvjmsg1frz1bf2yvld"; depends=[dplyr ggfittext ggplot2 lubridate scales]; }; - timeDate = derive2 { name="timeDate"; version="4021.106"; sha256="1qhh1d85s8r4wkcf4fljfm67lnkj8flnx9iz4hdg305xdkng3b8l"; depends=[]; }; + timeDate = derive2 { name="timeDate"; version="4021.107"; sha256="1i54a425r5hi08yl9rb2qh1nynh29ppv9b4h46cxyzn1ybqlr9sg"; depends=[]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="4021.105"; sha256="1k6vihbs20m7zjrxh13y9mmsvnia3844c7j13p0b7m5i9fb6rqxz"; depends=[timeDate]; }; - timechange = derive2 { name="timechange"; version="0.0.2"; sha256="15qyvhs96n2s5ply2dbs07i9mpvpvffd7ni5w668f10l3hixfhq8"; depends=[Rcpp]; }; + timechange = derive2 { name="timechange"; version="0.1.1"; sha256="0w3zbmzhg3zr5d9aa83kmr6gyhk75l7jysa7zs0pnz9x4ffr20w5"; depends=[cpp11]; }; timedelay = derive2 { name="timedelay"; version="1.0.11"; sha256="0hr5a2m621ybvl4qyx1xgwzviszj4ccvb149yclds9z87r5h2gm4"; depends=[MASS mvtnorm]; }; timedeppar = derive2 { name="timedeppar"; version="1.0.2"; sha256="0jazddjqrgipvpdxlqh8y3clhhad22syqw4hhaj19cdbxpvivgvw"; depends=[mvtnorm]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; timeperiodsR = derive2 { name="timeperiodsR"; version="0.6.2"; sha256="09vwp04j7n176xs1lbdmbyi557byx6fdvqyjay1785hkb9ivws5q"; depends=[lubridate]; }; - timereg = derive2 { name="timereg"; version="2.0.3"; sha256="0v5hmnppnv9ih29q4zmh8s9qxkdwaqg97093fldsy3fxs7g50dxv"; depends=[lava numDeriv survival]; }; + timereg = derive2 { name="timereg"; version="2.0.4"; sha256="1960z7r41v1bp9k0i74kah5933sv6mxdmrbijzky6a3dlzmmsn11"; depends=[lava numDeriv survival]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; - timetk = derive2 { name="timetk"; version="2.8.1"; sha256="1p893jwbyslzmmjk099w2ckqga3vhmvjrrkh6d6gfy6ngf90zh0f"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; + timetk = derive2 { name="timetk"; version="2.8.2"; sha256="1zfqrk2qw4f13zxdl5qd8b6f3c59xvq5dprqd4r6nb7w6cqim4cc"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; - timevis = derive2 { name="timevis"; version="2.0.0"; sha256="07padnd90s8s62sfcmg5l6b64md1cl4cfsxp5xm92nrlz82ksbbs"; depends=[htmltools htmlwidgets jsonlite lubridate magrittr rmarkdown shiny]; }; + timevis = derive2 { name="timevis"; version="2.1.0"; sha256="16b2iwf1lrw5b8am8c5xqkyg6inwac09qgbp0yigf3isd3qqs829"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; timsac = derive2 { name="timsac"; version="1.3.6"; sha256="186919qka9j3kfpdw2gbh16n48d6xgz9lfqgk4b17f1d7l72iplg"; depends=[]; }; timsr = derive2 { name="timsr"; version="0.0.3"; sha256="1n9xq01rfk5v0x0r8cr481s93nh99nf3kshb41d43r7zdw2dcwfi"; depends=[data_table opentimsr]; }; tinkr = derive2 { name="tinkr"; version="0.1.0"; sha256="161jm3hswzfwq31mzr11zzkfw6s488ax7n82g32zy8c6j6k71mr7"; depends=[commonmark glue magrittr purrr R6 stringr xml2 xslt yaml]; }; tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; }; - tint = derive2 { name="tint"; version="0.1.3"; sha256="00830n5nl6p73v9w0yzsak56phz4w1fh5lhf1c42gg1i81x7swnx"; depends=[htmltools knitr rmarkdown]; }; + tint = derive2 { name="tint"; version="0.1.4"; sha256="1vkdgxxgcj3qk3858sp3zi7c2id3dq0zxz23xd4i8lgbqgvvh2s3"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; tinyarray = derive2 { name="tinyarray"; version="2.2.7"; sha256="0nhsmgg126x2rfk82d91c8rk74sg7qbshy10vcbqdgcmlz6466mh"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; @@ -17776,12 +17891,13 @@ in with self; { tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; tinytex = derive2 { name="tinytex"; version="0.42"; sha256="1c925r62h84mhwd7v5j35ckdldf6cwb3wzczdn5s72hig0cplpr0"; depends=[xfun]; }; tinytiger = derive2 { name="tinytiger"; version="0.0.4"; sha256="17j5lxlbg6jyw5zpbgaxjhnydiiyrl2d010s5wq8p7jx16sji0w1"; depends=[cli curl glue rlang sf]; }; + tip = derive2 { name="tip"; version="0.1.0"; sha256="11khhkszd5a81q0h6acx5rvp1k97qj1srcvz2jilwf3v6nrz7daz"; depends=[changepoint doParallel foreach GGally ggplot2 igraph LaplacesDemon mniw network rlang]; }; tipa = derive2 { name="tipa"; version="1.0.5"; sha256="1mdjpbdbgd5n22l7fc0bfansh536ib1bgjaxzrl8g534cjxdnhgl"; depends=[optimr]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; - tipmap = derive2 { name="tipmap"; version="0.3.7"; sha256="0w9isg53zvhd2g3icfrdavcq33cg4v9ynljyn5p73p4ifai7mgdz"; depends=[dplyr ggplot2 purrr RBesT]; }; + tipmap = derive2 { name="tipmap"; version="0.3.9"; sha256="186k7d4hvbk5yrz0h23s2k1nakd2fjsc38jj4c0w6f94ldnbp00k"; depends=[dplyr ggplot2 purrr RBesT]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="1.0.1"; sha256="0lx6s0yiyl26gn49xlydyl49b7qb3rl94lahlcyhryayp8sns2ni"; depends=[glue purrr sensemakr tibble]; }; - tipsae = derive2 { name="tipsae"; version="0.0.7"; sha256="1mvik61p9031p4d409ff1ymz6bq1izhwnrid1f9snlrdm9n7inkk"; depends=[BH broom ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny StanHeaders]; }; + tipsae = derive2 { name="tipsae"; version="0.0.9"; sha256="0mrv3jw219jra70jr5lj87jvsr6pphmr7nbcns41qiynnaddrfad"; depends=[BH broom ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny sp StanHeaders]; }; tis = derive2 { name="tis"; version="1.39"; sha256="1sq3acz8mybsbxng5fga4ynqvh1ly9hs3ca727jiyx1gam712mis"; depends=[]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; @@ -17834,20 +17950,20 @@ in with self; { tools4uplift = derive2 { name="tools4uplift"; version="1.0.0"; sha256="1izm9q2bj9l2nd9jn0fi3lf9hscfa0vmib58ypgpjsbsn0nd7p2h"; depends=[BiasedUrn dplyr glmnet latticeExtra lhs]; }; topdowntimeratio = derive2 { name="topdowntimeratio"; version="0.1.0"; sha256="0dbn9hs3fsmwkjipk5wyl5wj02hv56ipcr9pmj068c4y6rm3qiqv"; depends=[data_table geodist lubridate magrittr]; }; topicdoc = derive2 { name="topicdoc"; version="0.1.1"; sha256="195yly7r14cpavbbr02iq3lqfb0gcx5cngfigivnid1rk45wv7bz"; depends=[slam topicmodels]; }; - topicmodels = derive2 { name="topicmodels"; version="0.2-12"; sha256="1d6iizmn042b59q2y6qc82z19wq3xm0zvgkf8iqf8fdzh51kmn5g"; depends=[modeltools slam tm]; }; + topicmodels = derive2 { name="topicmodels"; version="0.2-13"; sha256="16mw0l7wm5idc831csxlk176c42a5xw8qm8xhbnmmdl2hjk0cqbx"; depends=[modeltools slam tm]; }; topicmodels_etm = derive2 { name="topicmodels.etm"; version="0.1.0"; sha256="06w2n1gswv268sgzm0nz14mmrahibnsgcxh7hcks3bmq9r8d9ba4"; depends=[Matrix torch]; }; - topmodel = derive2 { name="topmodel"; version="0.7.4"; sha256="18k0nz2i2jr0m2pmzy75d77drbk1smrw7kkni7j0k79m9izwsmkc"; depends=[]; }; + topmodel = derive2 { name="topmodel"; version="0.7.5"; sha256="1bhzjy2ja4953a5wx8s3cz3v0ip6lym193faqxxabxjklgbsp416"; depends=[]; }; topoDistance = derive2 { name="topoDistance"; version="1.0.2"; sha256="1n6108giihc4aa1871m558s2z96m766ysvhak5b6zg1bnvpdj0l8"; depends=[gdistance plotly raster RColorBrewer scales sp]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.7"; sha256="073n8bkrapk6il3izqr3bmcdp7yc29yzpbyzh6fvy9rg0x4d3g0z"; depends=[fields graph gRbase qpgraph]; }; - topr = derive2 { name="topr"; version="1.1.0"; sha256="04vzis26zarxi3bqhvhiazn1if63k0rfc6b2znd555z3lq6hdd0q"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr scales stringr tidyr toprdata]; }; + topr = derive2 { name="topr"; version="1.1.1"; sha256="1c5m4422rx3hv62s0v2b2n3scfd66vhpq5gpxh81wzn32p0wcvii"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr scales stringr tidyr toprdata]; }; toprdata = derive2 { name="toprdata"; version="1.0.1"; sha256="0mn8j28b93blr2xfkbwha8mpmlhw6yy7yw84p3q80llapxqiy90a"; depends=[]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; torch = derive2 { name="torch"; version="0.9.0"; sha256="1iylnz0hsi00q7hngi2h24kg3nvjjg10z6iarqhp3wylsasgjs1f"; depends=[bit64 callr cli coro ellipsis magrittr R6 Rcpp rlang withr]; }; - torchdatasets = derive2 { name="torchdatasets"; version="0.1.0"; sha256="1iliz3iv143zmffd4jvvfxzsqn8bzp1sg5573rqjjbhnvy958mgg"; depends=[fs pins stringr torch torchvision withr zip]; }; + torchdatasets = derive2 { name="torchdatasets"; version="0.2.0"; sha256="0h558d5vzxibigb5hvvfllbaxfqkdjjrl51zzj89jwmmpkcjc8zd"; depends=[fs pins stringr torch torchvision withr zip]; }; torchopt = derive2 { name="torchopt"; version="0.1.2"; sha256="056j1fw759h81c0mlaadw5jb19ydpvjy85nhbjsn5k8a9azf4wki"; depends=[torch]; }; torchvision = derive2 { name="torchvision"; version="0.4.1"; sha256="07pdsqcnlmsc1yx7ldi18a0lqkgqbqwsqh7109rbrycczxrc1dqv"; depends=[abind fs jpeg png rappdirs rlang torch withr]; }; - torchvisionlib = derive2 { name="torchvisionlib"; version="0.2.0"; sha256="172kspvyv7fkd86cj16xdifzl8cln0fi227pvxsfqpr6d6rkzqg5"; depends=[glue Rcpp rlang torch]; }; + torchvisionlib = derive2 { name="torchvisionlib"; version="0.3.0"; sha256="01l04zabja3ancay7ynb5i7knqm1gd5101sx07fbid185w5j8yh4"; depends=[glue Rcpp rlang torch withr]; }; tornado = derive2 { name="tornado"; version="0.1.1"; sha256="12wvcc5p5fk6b1w3qhahjad5k0m34f744jszaid8hnrbbfysp8na"; depends=[assertthat ggplot2 gridExtra scales survival]; }; tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; toscmask = derive2 { name="toscmask"; version="1.2.3"; sha256="1inryfbci03klv4rlkzf20f3a0sc187lxybd4yn1dimz6f5z71ni"; depends=[]; }; @@ -17856,7 +17972,7 @@ in with self; { totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; touch = derive2 { name="touch"; version="0.1-6"; sha256="0w25zxxj5qaxkx64vz55qw4k4szx85ncbcam7q600ryy1kc5xxxv"; depends=[Rcpp]; }; touchard = derive2 { name="touchard"; version="2.0.1"; sha256="06491r4x3ycmv3ddbqwig334wj9qvm395xlaifx4hjjyyi65xb3q"; depends=[MASS nleqslv numDeriv plotrix]; }; - tourr = derive2 { name="tourr"; version="0.6.1"; sha256="1l39glvs8amd52ihnqa9nflh2mc0crb0jaqmpij2rxr3fnbc5mp8"; depends=[dplyr MASS tibble]; }; + tourr = derive2 { name="tourr"; version="0.6.2"; sha256="16cbybg9g0b8439scw5h3n1a0asnd5yvs91g6mcfipwfyzix045s"; depends=[dplyr MASS tibble]; }; toxEval = derive2 { name="toxEval"; version="1.2.0"; sha256="11rw8vjnz3kzikd59vbyiv8vc7dijpi6znyxlc7c4rpi41gs6c0m"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; toxpiR = derive2 { name="toxpiR"; version="1.2.1"; sha256="0n6x87gyzxsib267h0gs5b4sdkwmgjpgqzipfhlrjsnxq55q6599"; depends=[BiocGenerics pryr rlang S4Vectors tidyr]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; @@ -17867,7 +17983,7 @@ in with self; { tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracerer = derive2 { name="tracerer"; version="2.2.2"; sha256="0932074lzkzprn8rr8f59ywhgn33fwvbnkxnxg97k29gapx49iyb"; depends=[jsonlite Rcpp testit]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; - track2KBA = derive2 { name="track2KBA"; version="1.0.3"; sha256="09w5cnkqpl88kaq5303dlpiw2jha96nm457a62aszcdb871r470x"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maps maptools Matching move purrr raster rgdal rgeos rlang sf sp tidyr]; }; + track2KBA = derive2 { name="track2KBA"; version="1.0.4"; sha256="0g4i896yyv2kyjs5icavrx3h91wr9jnmgw8wykhvhakwpjr64cgf"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maps maptools Matching move purrr raster rgdal rgeos rlang sf sp tidyr]; }; trackdem = derive2 { name="trackdem"; version="0.6"; sha256="069nl1i73ayjnlsds4dnz6w4n765jijimgz20n9az7r0irvaddhi"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo shiny]; }; trackdf = derive2 { name="trackdf"; version="0.2.2"; sha256="110m7dmciyqbcb69sxi02h5djnf098wzfr84d6yppyc73a81989y"; depends=[data_table lubridate sp tibble]; }; trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; @@ -17886,25 +18002,25 @@ in with self; { traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; - trajectories = derive2 { name="trajectories"; version="0.2-4"; sha256="11h735zqlz8jg7syn46xg5kmv807px94la6gnml2jlcn2hld2a2l"; depends=[lattice sp spacetime zoo]; }; + trajectories = derive2 { name="trajectories"; version="0.2-5"; sha256="0wijsv6j0w0a0lz6y1iflznnr7aa2vbbwl5xzixjvq3ivwjdcgcl"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.4.0"; sha256="092hx27b6d0vy1pvmga1z3b245aa9gn9aw3hszbhhkkic5zfpgbq"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.7-2"; sha256="0wnj5c93by6svbh8b749khcjn9ksygddmnhg1v4i743snm1gl9l9"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; + tram = derive2 { name="tram"; version="0.8-0"; sha256="00jqg9pfy14l18ydgds5mylchb0rnyn80wy7f9w9y9nms5ri579j"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; tramME = derive2 { name="tramME"; version="1.0.3"; sha256="1xsxn3y809wyyxvzdi9db9pkw1bnvypykmjjy3qwzxd9q3f9i48c"; depends=[alabama basefun coneproj lme4 MASS Matrix mgcv mlt nlme numDeriv RcppEigen TMB tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-7"; sha256="0a7czkg69js07ryqwa2x0q83spcawm6jahq8fn8invnglk9iw8rs"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; trampoline = derive2 { name="trampoline"; version="0.1.1"; sha256="05inq5j8gvnpww6z21dzc57vilsm4gx3m274fpsamp54q85mi68s"; depends=[coro fastmap rlang]; }; - tramvs = derive2 { name="tramvs"; version="0.0-2"; sha256="0rwfs5yjpz9k1qls5jsk0w8f0ck417m03r7wjcsrxjndqk7pnymi"; depends=[cotram tram variables]; }; + tramvs = derive2 { name="tramvs"; version="0.0-3"; sha256="1fn119wliap4947gma0d7lvqbbwqavyd449m38pzvf9425i7a5ns"; depends=[cotram tram variables]; }; tranSurv = derive2 { name="tranSurv"; version="1.2.2"; sha256="17rvzjcn76z5niw1jappiadbkf66a9x0m7p3251lgb7qrnvpx3gk"; depends=[rootSolve SQUAREM survival truncSP]; }; transPlotR = derive2 { name="transPlotR"; version="0.0.2"; sha256="0xk7lqv4nf6565msschz72mqfdmpvvfylv0acj9qlg6jsanfxii7"; depends=[cowplot dplyr geomtextpath ggarchery ggplot2 magrittr purrr tidyverse]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; - transfR = derive2 { name="transfR"; version="1.0.0"; sha256="1lmxdy5fj23sg9c27biyca8vzvs1x5cfhayyzicv4c7jjp09z5vd"; depends=[doParallel foreach Rdpack sf stars units]; }; + transfR = derive2 { name="transfR"; version="1.0.2"; sha256="1ricgs7297wdmrw2vp5r6hxd266cq14c3nz2rrcas0vphmw1f5hl"; depends=[doParallel foreach Rdpack sf stars units]; }; transforEmotion = derive2 { name="transforEmotion"; version="0.1.1"; sha256="0lnmgbsh26mazx0g1s0jxg3jk1a6vw3bsaw07viv9kx3rdf6wc46"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; + transform_hazards = derive2 { name="transform.hazards"; version="0.1.0"; sha256="1k9p40dp3s4ylrh91cj06k4ryazw6b870yj5vdsd30j95pwnf3wi"; depends=[]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.4"; sha256="0h0zcsqyjxkc5g6zg79h7nq5z2rzfj93i1livwrkjj622y1br4y1"; depends=[cpp11 lpSolve rlang sf tweenr vctrs]; }; - translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; transmdl = derive2 { name="transmdl"; version="0.1.0"; sha256="16lvcjwb7hq4a4925kqnas7c4xqw3gpbad3fcghp0qm4whyig8dg"; depends=[Rcpp RcppEigen statmod survival]; }; transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; transplantr = derive2 { name="transplantr"; version="0.2.0"; sha256="1kzi8rvswsmibxqnhqd1j42y848si6cxd8hpvwi55y8s4hcylw0y"; depends=[]; }; - transport = derive2 { name="transport"; version="0.12-4"; sha256="0wvrsrlzv56lgn60c5w6fjg1zg1yvnnmnw7rm55zdycrjrkar5al"; depends=[data_table Rcpp RcppEigen]; }; + transport = derive2 { name="transport"; version="0.13-0"; sha256="0msz7z4mcz4s8sffqxsxjv5pwg2cwsg55fg477pr4vp3jgfznpn5"; depends=[data_table Rcpp RcppEigen]; }; transx = derive2 { name="transx"; version="0.0.1"; sha256="1xx934w4fhk2nwm5h6lf4irj83wsfp8lbplzcha5rnc7aka8pn3v"; depends=[rlang]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-2"; sha256="1pqb888w0q2zhcgjn0q4na2qwbxy4i8kfk6pp2id20gh8s96sm3f"; depends=[]; }; traudem = derive2 { name="traudem"; version="1.0.1"; sha256="0qxvh5zfj14yaywjzf83v01v6n064iq16ba8g72yh0pbb8i98w9i"; depends=[cli purrr rlang sys withr]; }; @@ -17914,6 +18030,7 @@ in with self; { tree_interpreter = derive2 { name="tree.interpreter"; version="0.1.1"; sha256="18p1x53q1hhhagglgsq2axnr9l5rpa08vxjayqqmb6rsjrkygn78"; depends=[Rcpp RcppArmadillo]; }; treeClust = derive2 { name="treeClust"; version="1.1-7"; sha256="1s7kh6q0bkixsygrip95zf1bi10ihddsa5lq9dfxd68yh8rsby6z"; depends=[cluster rpart]; }; treeDA = derive2 { name="treeDA"; version="0.0.5"; sha256="0rdqvjj16w7ykpxd6m800h4zv79y9c1phhkl14xy10gbi2cqh10g"; depends=[ape ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; + treePlotArea = derive2 { name="treePlotArea"; version="1.3.1"; sha256="1fkm6jac2j3r2s3whd3aql8czflpd99kmq5wa0nfb5qrynpvim7s"; depends=[sf]; }; treebalance = derive2 { name="treebalance"; version="1.1.0"; sha256="0wxsd9mx7bcz95vn4a9w1bzqvd8v1qk5qv00p3x58qks7nzxyzdv"; depends=[ape memoise]; }; treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; treeclim = derive2 { name="treeclim"; version="2.0.6.0"; sha256="0zdn766vxgycisjyjw7nh7hs817kqhdihyla3fhpzykw9pxnw0b2"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; @@ -17931,7 +18048,6 @@ in with self; { treespace = derive2 { name="treespace"; version="1.1.4.1"; sha256="177n1h4yjvfmdsyy4anwi1gfxcxxvhdlyqagn74ni3pi6mxvjp4s"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treestructure = derive2 { name="treestructure"; version="0.1.0"; sha256="0514q53bdwv9fwd58srhr6lzw1j56fcd64hml8w4rv4wzcd6c01m"; depends=[ape Rcpp]; }; - treetop = derive2 { name="treetop"; version="0.0.4"; sha256="0lisrbmzkil723jwcj422zglr78lbryny02wmnaw7zv2w9gw3xac"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgeos rgl sf shiny sp spatstat_core spatstat_geom stars]; }; trekcolors = derive2 { name="trekcolors"; version="0.1.3"; sha256="0jm85lrsqlpl1k62fbim48kprsqs50bm0dbajnk8f42x6i3m1xav"; depends=[ggplot2]; }; trekfont = derive2 { name="trekfont"; version="0.9.5"; sha256="1c0rwjmpg6b83kvkwrc0fcg1adx5is1g0wn01iss037jph5j0f2l"; depends=[]; }; trelliscopejs = derive2 { name="trelliscopejs"; version="0.2.6"; sha256="16i1km57yz8bl4ni919d3qmj8aj5l88l7byhd6ksh88ygpfl7wq8"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; @@ -17956,7 +18072,6 @@ in with self; { trimmer = derive2 { name="trimmer"; version="0.8.1"; sha256="0hn5pignj5clg7wb3xd0mh9jqc480wqxxymzaas68lxzi6p5mng9"; depends=[cli crayon data_table pryr]; }; trimr = derive2 { name="trimr"; version="1.1.1"; sha256="12z194g67b8g4vv1667hzhmns9mhw93icvdkxf2d45wfyjfdvsvv"; depends=[dplyr]; }; trinROC = derive2 { name="trinROC"; version="0.6"; sha256="0jpnr3l8f057k334sx803cc7kxgi8mxvxjgli88f8682ax9z47k3"; depends=[ggplot2 gridExtra rgl]; }; - trip = derive2 { name="trip"; version="1.8.5"; sha256="160dp9ji8j4w2fwh62l6cp485iy5n5is451rbgf28d5q0prd912c"; depends=[crsmeta dplyr geodist glue MASS raster reproj rlang sp spatstat_core spatstat_geom traipse viridis]; }; tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; }; tripack = derive2 { name="tripack"; version="1.3-9.1"; sha256="1ghza4by6shalsnqybn5qgv076dxh59b6vycg9v6ii216zbgi0kz"; depends=[]; }; triplot = derive2 { name="triplot"; version="1.3.0"; sha256="1apmdpxdnnmjyi7gcrjrqw44iqphr84nbgw0nfxcspzjgxhc81l1"; depends=[DALEX ggdendro ggplot2 glmnet patchwork]; }; @@ -17977,7 +18092,6 @@ in with self; { trust = derive2 { name="trust"; version="0.1-8"; sha256="1b6wsx4vybr5952ii3ska6jbcb3654iibz83n645khxfca5k8blm"; depends=[]; }; trustOptim = derive2 { name="trustOptim"; version="0.8.7.3"; sha256="11cx90zq9987i7kc86kxbip6c75bmw51shlwq2x9ywhybzk8vxl8"; depends=[Matrix Rcpp RcppEigen]; }; trustedtimestamping = derive2 { name="trustedtimestamping"; version="0.2.6"; sha256="1rx7ypy331mq5ni5hxhqcfnicvwdgg9j2pm3aj097a5hhigibdrq"; depends=[digest httr jsonlite]; }; - truthiness = derive2 { name="truthiness"; version="1.2.5"; sha256="0cssqlrilx2lglr2f53yysqgf604g4y326ijf8avlg6v5l6hlcr1"; depends=[dplyr DT emmeans ez forcats ggplot2 lme4 magrittr MASS ordinal purrr Rdpack readr rmarkdown tibble tidyr]; }; tryCatchLog = derive2 { name="tryCatchLog"; version="1.3.1"; sha256="0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d"; depends=[]; }; ts_extend = derive2 { name="ts.extend"; version="0.1.1"; sha256="03b358nywx0zynb6006886mzvz1mbbaim6b5m641drklh6k0l6r1"; depends=[]; }; ts2net = derive2 { name="ts2net"; version="0.1.0"; sha256="0f45xnvg09qvcc202dfr9d1a29909gmz863pjyq78mhjj0glijqw"; depends=[dbscan dtw igraph infotheo minerva mmpp nonlinearTseries scales zoo]; }; @@ -17996,7 +18110,7 @@ in with self; { tsdf = derive2 { name="tsdf"; version="1.1-8"; sha256="00s0aiis88611xsq9px61f9gwprp803wcvi5milvc7qckrh1kw0z"; depends=[]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; - tsentiment = derive2 { name="tsentiment"; version="1.0.4"; sha256="173m4ry58rz5cgffrwzxd9wr22w2ziny82zzby958w6vpyysdsc0"; depends=[dplyr ggplot2 httr progress reshape2 stringi syuzhet tibble tidytext wordcloud wordcloud2]; }; + tsentiment = derive2 { name="tsentiment"; version="1.0.5"; sha256="1sa1xy1v7p166r3sc3mg66zzw72n8vsy8q636knhyl71zzbvacsw"; depends=[dplyr ggplot2 httr reshape2 stringi syuzhet tibble tidytext wordcloud]; }; tseries = derive2 { name="tseries"; version="0.10-52"; sha256="0icgmng0dzvfkkn6dam74wvlz8g0cy46wkw57f5lpd5kxpdwi6ck"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; @@ -18004,7 +18118,6 @@ in with self; { tsfgrnn = derive2 { name="tsfgrnn"; version="1.0.2"; sha256="17m9k8nvfhpk11g7f64c32sb4r6vdcgci93apcr89y8dkbw4n5ga"; depends=[ggplot2 Rcpp]; }; tsfknn = derive2 { name="tsfknn"; version="0.5.0"; sha256="0rl3g0qs787cy67vq25aygb9mxhd63p66a1i4p2zi906cx4xj4b3"; depends=[ggplot2 Rcpp]; }; tsfngm = derive2 { name="tsfngm"; version="0.1.0"; sha256="1wx1imbvnc2bjvfal45zhgpz296fiydqffb0rk428xpjgp2dj6p7"; depends=[]; }; - tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.4.3"; sha256="0xzcfdad1z8336wnsrk9sy21psd898wwkdkndq7dshqwp2rj2kxl"; depends=[ggplot2 kernlab reshape2]; }; tsibble = derive2 { name="tsibble"; version="1.1.3"; sha256="0qb5ksj366l253rhkjpq7cpancplx2q81xn95b4ddwpnz3p16hhz"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; tsibbledata = derive2 { name="tsibbledata"; version="0.4.1"; sha256="1wh0i5rm5cp4f9hqgxjlhbsj3ag6wgdq38fpzc0gdsl84m6xvwnh"; depends=[rappdirs tsibble vctrs]; }; @@ -18027,7 +18140,7 @@ in with self; { tsxtreme = derive2 { name="tsxtreme"; version="0.3.3"; sha256="1725rkdq377z3c06hc2g9l0dwgfy5gz3pgygpz1pyy83s5c7j869"; depends=[evd MASS mvtnorm tictoc]; }; ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; }; ttTensor = derive2 { name="ttTensor"; version="1.0.1"; sha256="0ryfxx4chnc10cl5h5cb4hnvzf2cm64k8m36l4qbjz4f1vkw0a36"; depends=[Matrix PTAk rTensor tensorr]; }; - ttbary = derive2 { name="ttbary"; version="0.3-0"; sha256="116n07w944w9j4hzy0vg3hldlzdd4csprzqmbsry36cygvh8as2a"; depends=[Rcpp spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; + ttbary = derive2 { name="ttbary"; version="0.3-1"; sha256="0dp9jjl33p0r67nk7qxwjkniy7pxp8w7xbymm61hl29hqqbpmszh"; depends=[Rcpp spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; ttcg = derive2 { name="ttcg"; version="1.0.1"; sha256="1kha6jp89r8qx5rycwlcl1dprw33j71yng03k9l7q3b7d4lz4bg5"; depends=[numDeriv]; }; ttdo = derive2 { name="ttdo"; version="0.0.8"; sha256="184rfmrd4y63j8i62w8cy7d6cqgvlhj8h6zgjzsvad9l6pq2hmb3"; depends=[diffobj tinytest]; }; @@ -18050,7 +18163,6 @@ in with self; { tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2021.1"; sha256="17j308qla2680k0j8cf2c4v1jlsm21z93zglncmw3n0isa7cwjly"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; - tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; tvR = derive2 { name="tvR"; version="0.3.2"; sha256="1i20z09f714fyn3ipcn9i5g4dx7cyjfkyjqzyqzqapkg0m9ny91m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; tvReg = derive2 { name="tvReg"; version="0.5.7"; sha256="0q34266qk621cna5sf87yyp2jf9s9zc945bm2qsl8mh2ag0wii86"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; tvem = derive2 { name="tvem"; version="1.3.1"; sha256="1hrjl5kbp0wx7a4aa8bbvf5sdrxcvxsf3318ckgl85w923i8a44k"; depends=[mgcv]; }; @@ -18059,7 +18171,7 @@ in with self; { tvm = derive2 { name="tvm"; version="0.5.0"; sha256="1disznln4xgkr9q6sj978nadbwg43xv28fq3r3zyy6icg4x9h6gs"; depends=[ggplot2 reshape2 scales]; }; tvmComp = derive2 { name="tvmComp"; version="1.0.2"; sha256="1q5c3ahdjjz4h19pwq0dpasv87mzbyqs0hadlfx7mpmncdgyqcqq"; depends=[Rdpack]; }; tvmediation = derive2 { name="tvmediation"; version="1.1.0"; sha256="082lw56yhlb6nj7srdinim1hgvb8szzb3gp2y985115qgdypbv6n"; depends=[dplyr ggplot2 locpol]; }; - tvthemes = derive2 { name="tvthemes"; version="1.3.1"; sha256="0ig2pb0qdc9a0hm7j8860dj2ksqnsds2nslbpzf1ykqwfhnfgmsb"; depends=[extrafont ggplot2 magick scales]; }; + tvthemes = derive2 { name="tvthemes"; version="1.3.2"; sha256="15m1g191nw1bfz1jgcab316c8jzvam2zc5vnlz8k9b6lcqqnv3nl"; depends=[extrafont ggplot2 magick scales]; }; twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; twangContinuous = derive2 { name="twangContinuous"; version="1.0.0"; sha256="0bn1i9nid97irn820591ml3556bbmg6pw2qhm9k9vqgnqmnhcfnq"; depends=[gbm lattice Rcpp survey xtable]; }; twangMediation = derive2 { name="twangMediation"; version="1.2"; sha256="12dj98sqggcqzlkcmn2fmxv81cankp5hmswz07rwb2sn6awlq9jg"; depends=[gbm lattice latticeExtra survey twang]; }; @@ -18075,7 +18187,7 @@ in with self; { twitteradsR = derive2 { name="twitteradsR"; version="0.1.0"; sha256="15r6l9rf05xdr1m9zkmsg1v9vrdsyz480jqkgvx7yn27546z5653"; depends=[jsonlite]; }; twitterwidget = derive2 { name="twitterwidget"; version="0.1.1"; sha256="1dlhydhy69284gg3jsxwa6h8cp1rlkg1j8h8z1fjz4fyy1p5xrpv"; depends=[htmlwidgets]; }; twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; - twn = derive2 { name="twn"; version="0.2.2"; sha256="0s1yn5jvcb2vds6r3f3xsfnc01lzljljy606kf22lsfqcrrrk5vr"; depends=[crayon dplyr rlang stringr tibble]; }; + twn = derive2 { name="twn"; version="0.2.3"; sha256="1g73y0vkfhz2lvfcfxl3lrv6zj1gcymrxdihk7a2hpxnx1bfxjx1"; depends=[crayon dplyr rlang stringr tibble]; }; twopartm = derive2 { name="twopartm"; version="0.1.0"; sha256="0hncdfc9l1m31158kk5jdciqasv8nqr2q7cam38wi2wclqpk5r5v"; depends=[data_table MASS]; }; twosamples = derive2 { name="twosamples"; version="2.0.0"; sha256="1ap856n3gjjd5jr51gcgq70hrv1791fkhwz2x939wd89nr6xwzx7"; depends=[cpp11]; }; twosigma = derive2 { name="twosigma"; version="1.0.2"; sha256="0b73qcna55gmfxz1lzd987j28m7g8642s9wgzpndx3850q61yfli"; depends=[doParallel glmmTMB multcomp pbapply pscl]; }; @@ -18099,16 +18211,16 @@ in with self; { uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; uavRmp = derive2 { name="uavRmp"; version="0.6.0"; sha256="0spa0cv33kdrxzmfn07qnj1j98gxnjmi3v4888xj5v3a1yaa08kw"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r raster rgdal rgeos rlist sf sp zoo]; }; ubiquity = derive2 { name="ubiquity"; version="2.0.0"; sha256="1zjjwpl8zkpr4zvrhsbsj6vpiwy08vs2sw1rpx7aq940v37dvmbz"; depends=[deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; - ubms = derive2 { name="ubms"; version="1.1.0"; sha256="016rdjba3h2hm6ps4jrnqzy1hwm0nmn3yq922dbfw8396qvmr2zf"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; - uchardet = derive2 { name="uchardet"; version="1.1.0"; sha256="1dnvi45npk7l7sqbv3c1mrg0m7vrrp7iya9kjndcg9x3h0iial9z"; depends=[]; }; + ubms = derive2 { name="ubms"; version="1.2.2"; sha256="0d83i27cc4wlw5pivmkf5msvxyj99yr0fb5fibxa3knfz8hwwaxw"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; + uchardet = derive2 { name="uchardet"; version="1.1.1"; sha256="0m3xy807smqdxhkhd9cwrcf3ljlyvfmnkd7831qzpgcadam2jcdj"; depends=[]; }; ucie = derive2 { name="ucie"; version="1.0.2"; sha256="032anlli29a0iwzmn35afrcs4if5kipplpn8n4qpy1g14hc5zgvd"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; ucminf = derive2 { name="ucminf"; version="1.1-4.1"; sha256="1cknk42allcflgk16i4gwi4a389idrxqz6y2w8i7s9mdfgrvd981"; depends=[]; }; - udpipe = derive2 { name="udpipe"; version="0.8.9"; sha256="1pdxfr3523imyygm26zhisy3x0a8ay6wd4ndda93ic0lqxb5lapd"; depends=[data_table Matrix Rcpp]; }; + udpipe = derive2 { name="udpipe"; version="0.8.10"; sha256="0ipns4wzp7j0ms6i2mfkfkgqqd5cqbrv79valiz6r7ffx4yxys14"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.2.1"; sha256="00prsy8m41v1camcsz94d7gm8qab2mdnwl3x0dyhz4r49b02jm4z"; depends=[]; }; ufRisk = derive2 { name="ufRisk"; version="1.0.6"; sha256="190rjqhmm7r9yy4f5gyk2p8k250xnnkkssi3nfgv79w62z2hv2qh"; depends=[esemifar fracdiff rugarch smoots]; }; ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; - ugatsdb = derive2 { name="ugatsdb"; version="0.2.2"; sha256="0f5fgys80b5nlj5f8jadh5jpylhhb5hsknrsspfac5amncmb0yyv"; depends=[collapse data_table DBI RMySQL writexl]; }; + ugatsdb = derive2 { name="ugatsdb"; version="0.2.3"; sha256="098dzh6slaxj22730nm9g6b5653600ms2ahxr87iblh5xq0dcidl"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.3.1"; sha256="1faggg8hiqw4pblq5r3m9wi3x5m6kbjq0flf88mqa993v9rpdrf6"; depends=[rmarkdown xaringan]; }; @@ -18137,18 +18249,17 @@ in with self; { uniah = derive2 { name="uniah"; version="1.1"; sha256="0yjjn08aizqq6j5f9pnsjwdfqdmqrj1s8vjja97gzisfy1xscwfa"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.3"; sha256="052qjrnj04imhj6i62k8jdx9rs8r70n0qrmd2z45x4fimn5py6j5"; depends=[gmp graph]; }; unifed = derive2 { name="unifed"; version="1.1.6"; sha256="0wy2hasgkzw08l50qq30wb62i1q4skc3zccipv8pm911qlldk3sr"; depends=[]; }; - unifir = derive2 { name="unifir"; version="0.2.2"; sha256="0d9wb0af2sjipz47aqgy78f7ddbxs4qa7imwr2z46gigkfa8vb5s"; depends=[glue proceduralnames R6]; }; + unifir = derive2 { name="unifir"; version="0.2.3"; sha256="1l563qxym1srjj5xzcz8jks3577jpk33k1gb95lcyg7r9bh35j85"; depends=[glue proceduralnames R6]; }; uniformly = derive2 { name="uniformly"; version="0.2.0"; sha256="1xfwnklzmz72kp5qsb5zh3p6lwngpiaw5b4drjd41h9xvxdb3dyd"; depends=[pgnorm]; }; - unikn = derive2 { name="unikn"; version="0.6.0"; sha256="0qvqj80cqp90qvm2nacl49mnyi0ay91wngr4wk7xsrq67nv4vf22"; depends=[crayon ggplot2]; }; + unikn = derive2 { name="unikn"; version="0.7.0"; sha256="06y2jsx8hjbxdjm03w4ipjpxxp65fj10l2p3zjck82lyhw1llxxw"; depends=[crayon ggplot2]; }; unine = derive2 { name="unine"; version="0.2.0"; sha256="051dk8fss19h4d9815a7994krr1s3n5q0pxq9gir6zns0vvn05pw"; depends=[Rcpp]; }; uniqtag = derive2 { name="uniqtag"; version="1.0.1"; sha256="0vmd5w4p2qvpg6djddl92q9d3c6kiq0rjv6hq6j7x1b1zwqhgfi5"; depends=[]; }; unisensR = derive2 { name="unisensR"; version="0.3.3"; sha256="1pqfb8i3rj64l9hh1bn9mm78wlfqphgrlp7zrydznqy88f4jwgvy"; depends=[hexView vroom XML]; }; uniset = derive2 { name="uniset"; version="0.3.1"; sha256="1lpwsx1l6x186aj7wl5kvfmc5mp4g95p5h69alg8dn1sns84zqjs"; depends=[easycsv]; }; - uniswappeR = derive2 { name="uniswappeR"; version="0.6.0"; sha256="0n180v0kya6djkd3zngn4zvqzga3dhav41r94ckbzb1yww5ck1vd"; depends=[dplyr ggplot2 ghql httr jsonlite lubridate patchwork purrr reticulate rlang scales tibble tidyr]; }; unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; unitizer = derive2 { name="unitizer"; version="1.4.18"; sha256="1higz77mxyci56h3z5pizkbyqdbkf65lfxf8zm36gi1h04czxrnr"; depends=[crayon diffobj]; }; unitquantreg = derive2 { name="unitquantreg"; version="0.0.5"; sha256="1sb9gh0sdhs2bmybqkbnr82ymfiq1317iiihbgj56xxa4rwx13mg"; depends=[Formula MASS numDeriv optimx quantreg Rcpp]; }; - units = derive2 { name="units"; version="0.8-0"; sha256="06mjprqi06xprj6185k5cmrrdl025x0pd1r6a4x3s74ciq9zwilw"; depends=[Rcpp]; }; + units = derive2 { name="units"; version="0.8-1"; sha256="16ndhl4hkcll9r5vh8flp2bc3mavddfz8g6sqddj15scdcjbmqfk"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.5-3"; sha256="0lpihlga16qklha3i8j4yx9dkmvmsqp8iai0arza97cx63971xwx"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.4"; sha256="1kp014bhs8v02fp7misrj4fpfp2na9lg45p5zqvlfaypnm5imsr9"; depends=[Hmisc robustbase]; }; unival = derive2 { name="unival"; version="1.1.0"; sha256="0j7fl77my2273k72s8k9v5pcb85swxfipjxmk4vw487i7aq8b1nq"; depends=[psych]; }; @@ -18164,7 +18275,7 @@ in with self; { unstruwwel = derive2 { name="unstruwwel"; version="0.2.0"; sha256="1s8vfmh1lafb244r0bwp4m0r9x5la95lglxqvhb4sq9wmah04ka7"; depends=[assertthat dplyr lubridate magrittr purrr R6 rlang stringr tibble tidyr]; }; unsystation = derive2 { name="unsystation"; version="0.2.0"; sha256="02da7wzzk5bwd475i67v5x04ay2bn5yd5xffl1asqcqxcc5sy0m8"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-4"; sha256="1i7m4vfslsix98dwx4jlrsldm7fhhfp25gr7aapcxqxms7ryaby6"; depends=[Brobdingnag partitions polynom]; }; - unusualprofile = derive2 { name="unusualprofile"; version="0.1.0"; sha256="0dasknh8hwbvc530d8i0xfizqxygrlz3w2bdnsgdd9sf84flqajl"; depends=[dplyr ggnormalviolin ggplot2 lavaan lifecycle magrittr patchwork purrr ragg rlang scales simstandard tibble tidyr]; }; + unusualprofile = derive2 { name="unusualprofile"; version="0.1.1"; sha256="0p429w51jb3cz3gkxdzn55pya0xxwilrg4z7hkw0i6jijpwvisia"; depends=[dplyr ggnormalviolin ggplot2 magrittr purrr rlang tibble tidyr]; }; unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; updater = derive2 { name="updater"; version="0.1.1"; sha256="035js05xzs0i3xs6bizm5ixiiylzhdjkr8z0yijiqiqxw38w6h2l"; depends=[cli renv]; }; updog = derive2 { name="updog"; version="2.1.3"; sha256="1i7dc8msky5g658iwcvdvda2m0ya9cnbzm9d565l01lf184dfhhk"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; @@ -18178,7 +18289,7 @@ in with self; { urlshorteneR = derive2 { name="urlshorteneR"; version="1.5.7"; sha256="0zfvcwcy2ykvkbnqgxhzxf99shcby81cx8fjbmy6b07rj9407arj"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.1-2"; sha256="0dsb1vdr2bwy64v889svhvkadg5jl9cl77mfiw79vl18b7ixjzxx"; depends=[]; }; - ursa = derive2 { name="ursa"; version="3.9.7"; sha256="0z8sld9x4xs7dfhv462v47732md37hvpxv6iq3lm0xzbqc3adxx7"; depends=[jpeg png rgdal]; }; + ursa = derive2 { name="ursa"; version="3.9.8"; sha256="0700kspd64mmk9nrfs49maxlj1x2hysfvkyhn275lp8498am7yka"; depends=[jpeg png rgdal]; }; us_census_geoheader = derive2 { name="us.census.geoheader"; version="1.0.2"; sha256="17mss1ggaqkd0ac7g9chgqdrpi5xlbfkxsm1jvj48rp2jfwpp4jw"; depends=[tibble]; }; usa = derive2 { name="usa"; version="0.1.0"; sha256="0scdrd6b48n019f7qp77rrkqgmapnrknalq0hml1cy7m43llqf6d"; depends=[tibble]; }; uscoauditlog = derive2 { name="uscoauditlog"; version="1.0.3"; sha256="156by8lans2jk8kjll88ljc6z5idgvqwkvrgdwjkr4l4xnsz0sif"; depends=[openxlsx readxl stringr]; }; @@ -18193,18 +18304,19 @@ in with self; { usethis = derive2 { name="usethis"; version="2.1.6"; sha256="0638dzl4nm4c36990sf2biy74hjr2fzlqzfb98fsqrbhaw3ngp1i"; depends=[cli clipr crayon curl desc fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; ushr = derive2 { name="ushr"; version="0.2.3"; sha256="1ygyqgxw849165lpk81f114kgx9015b9a9dngavjy3ffqzrbb41k"; depends=[dplyr ggplot2 tidyr]; }; - usincometaxes = derive2 { name="usincometaxes"; version="0.5.3"; sha256="0m816hw9hczr32adq49dl5d78r4imc97mrbyh3npdpwpzyrakhay"; depends=[httr tibble tidyselect V8 vroom]; }; + usincometaxes = derive2 { name="usincometaxes"; version="0.5.4"; sha256="1ccga22afagdlyyw33p7rk8lr8l54li64vqav7yyqc7hz7r1mzbd"; depends=[httr tibble tidyselect V8 vroom]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="3.0.3"; sha256="0hql4bc40xa62r465lm4x14yf8dbhsl046i5k8xlq1qr93cw6pnx"; depends=[nlsr]; }; - usmap = derive2 { name="usmap"; version="0.6.0"; sha256="1jdn9rl6kkfmr9d6wrg1673nr7xh5h14ynv2mx64xcn581c9jzis"; depends=[usmapdata]; }; + usmap = derive2 { name="usmap"; version="0.6.1"; sha256="1q27xxvfrwin61jxba2k91brgcam7hqq5yv5hha4f8s7h3rqam6b"; depends=[rlang usmapdata]; }; usmapdata = derive2 { name="usmapdata"; version="0.1.0"; sha256="13a4bj6ixqzfwm60r2c3i9zy96mr2hk77n720zs5i0i16acfnxav"; depends=[]; }; - ustfd = derive2 { name="ustfd"; version="0.1.1"; sha256="0r8vdh1gak0vkqfm2cjcc43jf8jpin9kvv9rv2zfzsdkylkpcpxd"; depends=[dplyr httr lubridate purrr readr]; }; + ussherR = derive2 { name="ussherR"; version="1.10"; sha256="0awhric6xrhgv4wb9saq7jyikd3h74i6vlq3aqip4i1m9j3ym3k1"; depends=[]; }; + ustfd = derive2 { name="ustfd"; version="0.2.0"; sha256="1q2i1jlvgdyvx55r3h3f0g6zqyv197yyfkkiaixy4kzdzp9rxy9d"; depends=[dplyr httr lubridate purrr readr rlang tibble]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.2.2"; sha256="1x6qg19z4qih9lk3mvnmx0vailm1khp5lylw4hlwz6rssj3yw6m7"; depends=[]; }; - utile_tables = derive2 { name="utile.tables"; version="0.2.1"; sha256="0bj3rg4f9dby7qzf0m95dg626ws4nz5v2vn3m50x8g3pqq8m7lmp"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; - utile_tools = derive2 { name="utile.tools"; version="0.2.7"; sha256="1hclxfq7ccrhsirpnpl3kpybd2zn4dc4pk49adqfik5lg9xi8kxh"; depends=[lubridate purrr vctrs]; }; - utile_visuals = derive2 { name="utile.visuals"; version="0.3.1"; sha256="1j13pvzgi8rv38clxl421ji3c47vg8scragg246xpgmd24yk64a5"; depends=[dplyr ggplot2 gridExtra purrr]; }; + utile_tables = derive2 { name="utile.tables"; version="0.2.2"; sha256="139y2a60kxj9x4nx2rb3cd7q69if370vzyikbrnf36h8v62dcr3q"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; + utile_tools = derive2 { name="utile.tools"; version="0.2.8"; sha256="1zlib1ydy8919xngp7rzz7shixwqpsk3ljgjyqzcxa5y1gyzb461"; depends=[lubridate purrr vctrs]; }; + utile_visuals = derive2 { name="utile.visuals"; version="0.3.2"; sha256="12crzqcap4s0ji9839ykmvp31b5p10c59z95wmklhcsnpc7n3k6w"; depends=[dplyr ggplot2 gridExtra purrr]; }; utilities = derive2 { name="utilities"; version="0.6.1"; sha256="0wcw9gcxd66vhr7vb24y94bgqckfkwvg1rcsxdqaz5r06qn2p9nf"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.5"; sha256="0a11bxyg8la6yvxr04qbhay05jb2ihd7calc1zcisgj43kq6k7xd"; depends=[]; }; utilityFunctionTools = derive2 { name="utilityFunctionTools"; version="0.1.1"; sha256="1225nl83yka31j0adm1210kc89vs3hi9i2pqrykax109sgk0nw97"; depends=[spatstat_geom]; }; @@ -18217,6 +18329,7 @@ in with self; { uwot = derive2 { name="uwot"; version="0.1.14"; sha256="1q4z98w3pkc51vrcpmwaibnwmlm17zjcnh0qlx660wky5ccyh5l0"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress]; }; uxr = derive2 { name="uxr"; version="0.1.2"; sha256="0iasxwxfk52311mb3gikk3j2cs21wssg9yv06bv15dl7zm9sh14i"; depends=[dplyr scales]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; + vMF = derive2 { name="vMF"; version="0.0.1"; sha256="1sygiqyzqikrpdiav0117hnv6zynq1d415v73ygjfj4c1v5l05h0"; depends=[BH Rcpp RcppArmadillo]; }; vacuum = derive2 { name="vacuum"; version="0.1.0"; sha256="0cmlvlz83gyga05g71hrnq4kpck9flq0qlhjviqqz9zrmljzin0x"; depends=[dplyr magrittr]; }; vader = derive2 { name="vader"; version="0.2.1"; sha256="1xjak5xlgpk0ds4l825kq90dg6kk5i5al5zmjqjqn8b7xdgix8mf"; depends=[tm]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; @@ -18247,6 +18360,7 @@ in with self; { vangogh = derive2 { name="vangogh"; version="0.1.1"; sha256="1ny4dgwkk54pgwgg3lwcv8vcdnizlajdck68ihpzh2s1yz4n38bm"; depends=[ggplot2]; }; vannstats = derive2 { name="vannstats"; version="1.2.7.14"; sha256="06y1h4w6zkvkdh81w5qaf15apk4w3sj86zj54l7fx4g6qddfnqsw"; depends=[car dplyr formula_tools gdata ggplot2 gplots MASS plm purrr rlang rstatix stringr tidyverse]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; + vapour = derive2 { name="vapour"; version="0.9.2"; sha256="0g7jikkagqnqblyskfsd9wv2czx75v172z6rrdn2bf25m0hwcpw0"; depends=[jsonlite Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; @@ -18280,8 +18394,8 @@ in with self; { vcmeta = derive2 { name="vcmeta"; version="1.1.0"; sha256="02zfrdrl5ilaa7is1j8189p4f7n8zdy2jyzzh864zm1a4dkii2rk"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; - vcr = derive2 { name="vcr"; version="1.0.2"; sha256="0d7g67adnjhhaikz61nc3ivl8pzyvsk8ah0a34d8wgxknfva29sb"; depends=[base64enc cpp11 crul httr R6 rprojroot urltools webmockr yaml]; }; - vctrs = derive2 { name="vctrs"; version="0.5.0"; sha256="11pnblg2fpa3lr5hbiyw6w7wvlkdvqw35wxrkffcxnlxqc9jwdvw"; depends=[cli glue lifecycle rlang]; }; + vcr = derive2 { name="vcr"; version="1.2.0"; sha256="12xiw53dba7dcsdfb8c2cg4v6i9jzhf42plw6hwfp9v65bmq3b83"; depends=[base64enc crul httr R6 rprojroot urltools webmockr yaml]; }; + vctrs = derive2 { name="vctrs"; version="0.5.1"; sha256="01yv85rjpn9cz4473m768awrcaif51ffjh29p097c7pj2zvq4ya9"; depends=[cli glue lifecycle rlang]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.2"; sha256="0fdqmvzw6dd18w653kfvnw16489jpsyl1395xffhm8rz1dqkrhj1"; depends=[ggplot2 gridExtra proxy quantreg]; }; @@ -18297,7 +18411,7 @@ in with self; { vegawidget = derive2 { name="vegawidget"; version="0.4.2"; sha256="0rnr54h11gd2x2llypdvaai6v8z3nk5fbpb7zd0dcy7hh55ncfcs"; depends=[assertthat digest glue htmltools htmlwidgets jsonlite magrittr rlang]; }; vegclust = derive2 { name="vegclust"; version="2.0.2"; sha256="18v1iqgabhsdxi76kvy9wgp9h2i17aw4c43kcki7lzyqiyyql0nx"; depends=[vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.11.3"; sha256="0fqsgmn1dg91pnr1fm057va67a5qssagm75vf8i00bgva22m9j45"; depends=[curl DBI dbplyr dplyr foreign hoardr httr indicspecies magrittr plyr RCurl RSQLite stringr xml2]; }; - vegperiod = derive2 { name="vegperiod"; version="0.3.1"; sha256="178zp7hw7bicygzl4ql0a9llkmrk4kyszcvvl430pvsc5y6srg75"; depends=[]; }; + vegperiod = derive2 { name="vegperiod"; version="0.4.0"; sha256="0m10m85cf0qk2q2ln1qziqicv79rbjqqi9py18r412j7m43pn013"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.7"; sha256="1rxc2f4w51p4gr30p56n3shwvknlbqb8wczbs2xxvcf1f823yn38"; depends=[foreign knitr qdapRegex sp stringi taxlist vegdata]; }; vein = derive2 { name="vein"; version="0.9.9"; sha256="06r9235p15qcy4h3i96p4p2qq0sznphs912wirqdiv52i5h1h384"; depends=[cptcity data_table dotCall64 fields sf units]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; @@ -18310,6 +18424,7 @@ in with self; { verbalisr = derive2 { name="verbalisr"; version="0.4.0"; sha256="17zq2qc361kmd32pfzqgxpgw2z4z1iq831cq85fffdc3nvl3wwx4"; depends=[pedtools ribd]; }; verhoeff = derive2 { name="verhoeff"; version="0.4.0"; sha256="0kpxpl5s5342ajg22cwb7y9ks240drp37q1g67n19krdy6ih14kz"; depends=[]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; + vermeulen = derive2 { name="vermeulen"; version="0.1.1"; sha256="10jlgrwpgkfiwlyli6mpd0wavi71h39sj6mklnvfskhnblvqdrz8"; depends=[memoise]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; @@ -18326,16 +18441,16 @@ in with self; { video = derive2 { name="video"; version="0.1.0"; sha256="0ha1wy4vxxaj22qfviqv5w27g5yvf9jjmfy5zw40s78myjjgrqqy"; depends=[htmlwidgets jsonlite shiny]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; vietnameseConverter = derive2 { name="vietnameseConverter"; version="0.4.0"; sha256="1bnscv1yz4hr6cvpavdj2gjn6dqy96rbagxl9280a2xxav09mps3"; depends=[gsubfn sf utf8]; }; - viewpoly = derive2 { name="viewpoly"; version="0.3.1"; sha256="1vnh97iqq1k67lxlj4488ymwpd5p9pqvjawiqdi0qj9s2vz4j35d"; depends=[abind config curl dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; + viewpoly = derive2 { name="viewpoly"; version="0.3.2"; sha256="1say30d46vj67ng5mprhwl02jf9d0kv573j80r05z08szmcm4sxb"; depends=[abind config curl dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; viking = derive2 { name="viking"; version="1.0.0"; sha256="0ggnp96igmdzp8acyj57mkkd2xd3ixcnakpwp417yzsdqqlg20sf"; depends=[]; }; villager = derive2 { name="villager"; version="1.1.1"; sha256="0g72zpsqi39ax44n3s3x66b1fbgyx6w2wraf531jsy7vj95ivr2p"; depends=[R6 readr uuid]; }; - vimp = derive2 { name="vimp"; version="2.2.5"; sha256="13461pcvyc6rad1rf2ymmkyzcwjxw7g4fs8qd51baljhjnjmifv0"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; + vimp = derive2 { name="vimp"; version="2.3.1"; sha256="1m88zjxv6zjbbln851kwj9wfam59q8z93s6dz6lmga530d7z4xja"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; vinereg = derive2 { name="vinereg"; version="0.8.3"; sha256="0d1ibrhjsbjaaz2cd9lg76cjplkys716i689khzaiv4sgbjhwdh1"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinplotter = derive2 { name="violinplotter"; version="3.0.1"; sha256="1xy57mycdsr9qr48n1jrw0nzwz848r0xcns864d8gyc8zikp3x6a"; depends=[]; }; - vioplot = derive2 { name="vioplot"; version="0.3.7"; sha256="1dmdasp3jldc41233z6r08w3j76vyyp9m3jrj7n4ahk48yd5siq6"; depends=[sm zoo]; }; + vioplot = derive2 { name="vioplot"; version="0.4.0"; sha256="1db7g0378jbcd6ssb7afff4y4r0v472qnb625hfwixx4wf1v8aap"; depends=[sm zoo]; }; vip = derive2 { name="vip"; version="0.3.2"; sha256="1qsvyfms79sn46jdmq7q5r0d6gwjqhr9pll1y776rx0bj7vx1ax5"; depends=[ggplot2 gridExtra magrittr plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; viridis = derive2 { name="viridis"; version="0.6.2"; sha256="048kwhbhd49g86cq11fl7vm0whwhjl5gs9xjn040lwcjv78qrdb9"; depends=[ggplot2 gridExtra viridisLite]; }; @@ -18357,7 +18472,7 @@ in with self; { visit = derive2 { name="visit"; version="2.1"; sha256="0kkspih7m18g5pqlwrxpgjdwqxpp23c3xyvcnvv247abl9aq81rd"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders]; }; visreg = derive2 { name="visreg"; version="2.7.0"; sha256="070yhyxxh3w16i54k790n47bgcjn4b10b6g1z553x6afjc3l3a6d"; depends=[lattice]; }; vistime = derive2 { name="vistime"; version="1.2.3"; sha256="18gqx71mpjsccfnab11j3g8wl11x2sk7bbjbcpi23qsk5d7sy112"; depends=[assertive_types ggplot2 ggrepel plotly RColorBrewer rlang]; }; - vistla = derive2 { name="vistla"; version="1.0.0"; sha256="1cbhx2kc5ha25hv0y3hq73iivvq8j96128c4r03hl9j853374wap"; depends=[]; }; + vistla = derive2 { name="vistla"; version="1.0.1"; sha256="1x5iighpdx1mf3gips1b5j39z2f52kjs2dd3b3l58v391j4q36sx"; depends=[]; }; vistributions = derive2 { name="vistributions"; version="0.1.2"; sha256="1nzkbyqks38n7gp55iqhrlxqyfwxk4fvqzi9vsb45h0m0hlmwhxr"; depends=[ggplot2 magrittr]; }; visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; @@ -18384,7 +18499,7 @@ in with self; { volcano3D = derive2 { name="volcano3D"; version="2.0.8"; sha256="08qxp9bgm0dbndv1c91xpl0yajmyrxbpss0ga3c47ldyhc0iq7sd"; depends=[ggplot2 ggpubr htmlwidgets magrittr matrixTests plotly Rfast rlang]; }; volesti = derive2 { name="volesti"; version="1.1.2-3"; sha256="1qisar6q0fk4p327mai0zfj57dn0k4vkkamd2pkx1cx3wi0izq0h"; depends=[BH Rcpp RcppEigen]; }; volleystat = derive2 { name="volleystat"; version="0.2.0"; sha256="0n1r0bvvmba21cs3qgpnw9jxpgl2n82fhxa40sa1w2gav5rch5i6"; depends=[]; }; - voluModel = derive2 { name="voluModel"; version="0.1.6"; sha256="0v8b9icr4sbfrbcv7skrwvgz7z2mk9bf9n5sqyl7wycbbgjim6x5"; depends=[dismo dplyr fields ggplot2 ggtext latticeExtra rangeBuilder raster rgeos sp terra viridisLite]; }; + voluModel = derive2 { name="voluModel"; version="0.1.8"; sha256="1vaqwavjjs1ff32l5zxhczb72b5f7ls09v2s9z4vrnjajpf5av5g"; depends=[dismo dplyr fields ggplot2 ggtext latticeExtra rangeBuilder raster sf terra viridisLite]; }; voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; voson_tcn = derive2 { name="voson.tcn"; version="0.5.0"; sha256="1fylp5770by5ybpda6n8c3y8n7zsmc62f5q11k0ndh5kp7ka11cb"; depends=[dplyr httr jsonlite openssl progress rlang stringr tibble tidyr]; }; @@ -18406,11 +18521,11 @@ in with self; { vscc = derive2 { name="vscc"; version="0.4"; sha256="0ym9wy661d6m2a9drix5jb6r2sm6kqs314yc46qgq7qmdscdw52b"; depends=[mclust teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; - vsp = derive2 { name="vsp"; version="0.1.0"; sha256="0fa3fdjhq59gpx0ac38ska0sfhq07g9x3vhbvrvlpc18kxwj5mzh"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; + vsp = derive2 { name="vsp"; version="0.1.1"; sha256="0aa3vqzazh0x5irbmqh9ac1xiprwnbgbrjl9bybxzynl91hwg9yw"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; - vtable = derive2 { name="vtable"; version="1.3.4"; sha256="1b26kqdvvp8d0467b3x7jhpk01lcf1jyfikc7lzn4qs60q0ndgwl"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; + vtable = derive2 { name="vtable"; version="1.4.1"; sha256="1mvcmhy58kibwrjbqm07pynk1rin179nb94j1c6ym8sgq2by1h3g"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; vtreat = derive2 { name="vtreat"; version="1.6.3"; sha256="181nsjl811m3k1123bvgnnwr253sc2mbj4ljzmawz9wl7dfbwfij"; depends=[digest wrapr]; }; - vtree = derive2 { name="vtree"; version="5.4.6"; sha256="03n79xn4wr4hqrj571781igd07dw0sxfi6cnvmhmshc0brzkz7s9"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny]; }; + vtree = derive2 { name="vtree"; version="5.6.5"; sha256="0qszya11qh2xzq1blbrcli3l8hhf0dannhh2hn3gi59c9dn3jr16"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny utf8]; }; vtype = derive2 { name="vtype"; version="0.8"; sha256="0j070bn86a6hlg99h2qaf0dlbnjjsmx1zdcmvl3acymr31bqyvrj"; depends=[randomForest]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vueR = derive2 { name="vueR"; version="0.5.3"; sha256="0am4iwgadi9c9f7zm5zx3nrzyhy7w1qgp9rkyypzwb6bicjjb9cz"; depends=[htmltools htmlwidgets]; }; @@ -18430,13 +18545,13 @@ in with self; { waldo = derive2 { name="waldo"; version="0.4.0"; sha256="1aky28rn70l24s0sygl36267cf7hjzhchagsz26abfxwr7p8kvjp"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; walker = derive2 { name="walker"; version="1.0.6-1"; sha256="0kmk8lxg3m3436bdghqizjgzln4lqrs3ks1mgfza63n59z5d20h8"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - wallace = derive2 { name="wallace"; version="1.1.3"; sha256="0q9nppyiijzbmdi6dvgnh8l8i1vassqcl5wc7bv08hidxbkw3pqs"; depends=[dismo dplyr DT ecospat ENMeval jsonlite leaflet leaflet_extras magrittr raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs sp spocc spThin zip]; }; + wallace = derive2 { name="wallace"; version="2.0.0"; sha256="11yxiz1gf50jmridh04j0z768mv2cbwganpryrc980rc1anrbm27"; depends=[dplyr DT ecospat ENMeval glue knitcitations leafem leaflet leaflet_extras magrittr RColorBrewer rgdal rgeos rlang rmarkdown shiny shinyalert shinyjs shinyWidgets spocc spThin zip]; }; wally = derive2 { name="wally"; version="1.0.10"; sha256="1d03vxn6q7v0nsrkd7dxkkv3siysgicv6c13fkvwmypln9vsl6sl"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; walrus = derive2 { name="walrus"; version="1.0.5"; sha256="0z674sg78rdv9rmqr7s4w9rw8diciifwr4bc2v57yfvp0n9gcys4"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.5.0"; sha256="0y9xmh9a93lnadg83i223j2nf77jazz8m1ck1bmdf5jwj4vyzaqa"; depends=[]; }; warabandi = derive2 { name="warabandi"; version="0.1.0"; sha256="0b1g2fpshhkd15b6fz4v3qwf425p5ahbh57acclqq6znl1acl1hg"; depends=[flextable lubridate readtext]; }; - warbleR = derive2 { name="warbleR"; version="1.1.27"; sha256="1fd008v3di7z5ixljk5zwaw2wcc4zfqlnw9546894ybw5m9jsk26"; depends=[bioacoustics crayon dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave stringi tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.28"; sha256="061scws8a3jkpnfkpcpwdcxnnqpszshj409qjgcdqrcl0s5d1jh0"; depends=[bioacoustics crayon dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave tuneR]; }; warp = derive2 { name="warp"; version="0.2.0"; sha256="0s0acddc5h14245hi1faycxp0fyvw6nlgaz2df7da4fpyd2f638f"; depends=[]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; @@ -18446,11 +18561,12 @@ in with self; { waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; waterfall = derive2 { name="waterfall"; version="1.0.2"; sha256="0jy6l9mx0dixwnkychdl18sf4xh73pm0qd1jyxp9rlnv1vcragjp"; depends=[lattice]; }; - waterfalls = derive2 { name="waterfalls"; version="0.1.2"; sha256="01gby1mlhrwcalizpywxcakkx2zifswb0188nrl6z9dkkd1866lm"; depends=[ggplot2]; }; + waterfalls = derive2 { name="waterfalls"; version="1.0.0"; sha256="1wj1wlih1fh3y3wj3czhz5fzik7i499l6pycj44rq8rpvi7bkj0d"; depends=[ggplot2]; }; waterquality = derive2 { name="waterquality"; version="0.3.0"; sha256="0aikgz4x2ny2q7mnxsyk5pl87yb9gq6pcvvnj1s32383683j5ys9"; depends=[caret dplyr magrittr pingr purrr raster rgdal vctrs]; }; watson = derive2 { name="watson"; version="0.1"; sha256="06wszdk9d8b07kp5s30q474nd3rz0za6k158g4dl9cpd3bbwzj72"; depends=[Rcpp RcppArmadillo Tinflex]; }; - wavScalogram = derive2 { name="wavScalogram"; version="1.1.1"; sha256="15y5gqp39jx0ggsimmf7k22qg1142c55apd04q05jqi50ljzda70"; depends=[abind colorRamps fields]; }; - waveband = derive2 { name="waveband"; version="4.7.1"; sha256="1ja8jfvv790s6ih50iz6zykpq06dbzqi28cp8vyqcd1iz2bkdixp"; depends=[wavethresh]; }; + wav = derive2 { name="wav"; version="0.1.0"; sha256="1f5y53max7vliq4sq66hqjjns8s9lsx9pkdjk6rm929gk371x7by"; depends=[Rcpp]; }; + wavScalogram = derive2 { name="wavScalogram"; version="1.1.2"; sha256="08yxx0szgxa903majjjv4y7lkkc8kp3j0q0lq9sfjcqcjvk850gn"; depends=[abind colorRamps fields]; }; + waveband = derive2 { name="waveband"; version="4.7.2"; sha256="1aa1rdwpfj3fx3xc7i9h0la268yv7hsm1fxndq3rk5slzy12zq8z"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.2"; sha256="0zv4rgazk9s295pggzfa7sc062zv68dgds1ngxcz7vg1fx0qkgxg"; depends=[]; }; wavefunction = derive2 { name="wavefunction"; version="1.0.0"; sha256="1g0g9i0s93lcpcx7icqn15bvkmd79slkgimspvvwp2bxdsc5nnf2"; depends=[]; }; wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; @@ -18458,7 +18574,7 @@ in with self; { waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; waves = derive2 { name="waves"; version="0.2.4"; sha256="128q1l0ishdgpa33zh77xpi79nvziix8swq1rwyawnznl9ybs29w"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; waveslim = derive2 { name="waveslim"; version="1.8.4"; sha256="1510xpkgrhdw394m5anxccdczjikcxazyd09ix2z73i15akyx3j0"; depends=[]; }; - wavethresh = derive2 { name="wavethresh"; version="4.7.0"; sha256="0b7mm8m6wrfj8x36x2igpwzmvmdjlmdk0j69wly6v5babmb2a1zm"; depends=[MASS]; }; + wavethresh = derive2 { name="wavethresh"; version="4.7.2"; sha256="0mmn8f5x8iw8vn0zsskzs3g41bm28prvzy9bmbng8va94g5795ws"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; waywiser = derive2 { name="waywiser"; version="0.2.0"; sha256="1bx1hmln9z2yaa6r8q30wv3mm0908y0yqqcbyzzgpqpcijvgxxng"; depends=[fields glue hardhat Matrix purrr rlang rsample sf spdep tibble yardstick]; }; wbacon = derive2 { name="wbacon"; version="0.6"; sha256="0b91h71fs07knnqrbr167wdlb1iakafbadzr4zznndwplx3ygpbz"; depends=[hexbin]; }; @@ -18477,11 +18593,12 @@ in with self; { weakARMA = derive2 { name="weakARMA"; version="1.0.3"; sha256="16dzyw7jiyqv9hd94dff9lxhqv9rwib1xs1km0xfqcy6xa2jhw8w"; depends=[CompQuadForm MASS matrixStats vars]; }; wearables = derive2 { name="wearables"; version="0.8.1"; sha256="0fjf43cgna1mg4mgg98kqhhl88yfhrr57rln2z6xm6d6bj73q5zn"; depends=[dplyr futile_logger ggplot2 kernlab lubridate magrittr padr R_utils RHRV signal varian waveslim xts]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; - webchem = derive2 { name="webchem"; version="1.1.3"; sha256="13dkf4py4nkf7fqnsb7jnjrrcasjj8rndvdkff0g48zfh0ypyaxf"; depends=[base64enc data_tree dplyr httr jsonlite purrr rlang rvest stringr tibble xml2]; }; + webSDM = derive2 { name="webSDM"; version="1.1-1"; sha256="0qxiqba10dbnc6ndv6w50ax6726shn8pc3yqjvbqi1bk7yg03plr"; depends=[abind bayesplot brms broom_mixed dismo dplyr GGally ggplot2 glmnet gridExtra igraph jtools Matrix rstanarm rstantools]; }; + webchem = derive2 { name="webchem"; version="1.2.0"; sha256="0mvd0hppdrqngg1j7x2sdh3nkdb3zmsdf1gwqvzm128v6clsi7ls"; depends=[base64enc data_tree dplyr httr jsonlite purrr rlang rvest stringr tibble xml2]; }; webdeveloper = derive2 { name="webdeveloper"; version="1.0.5"; sha256="1nw97df9q0dpzl82pdybw527hc407ch2xg8f0s2z4kf89yp6ckhg"; depends=[future html5 httpuv promises readr stringi]; }; webdriver = derive2 { name="webdriver"; version="1.0.6"; sha256="0k87any9rvv367p2zwy89r3rxszsq3w78pzdq36by4ijn659la2l"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webexercises = derive2 { name="webexercises"; version="1.0.0"; sha256="1z0dqiqk0v6h97qg89nwn9d57zn1png066va8dirk3mmk4jlfrqc"; depends=[jsonlite knitr rmarkdown yaml]; }; - webfakes = derive2 { name="webfakes"; version="1.1.5"; sha256="1bg8pkbcazzb0ng3i77mflsb09i5qgmrqr5jhz3iylvxrjrv1pxv"; depends=[]; }; + webfakes = derive2 { name="webfakes"; version="1.1.6"; sha256="0aqa315a8ymfjgg3n7nri7r135r60gwkz118r2jy2bigml31szd4"; depends=[]; }; webglobe = derive2 { name="webglobe"; version="1.0.3"; sha256="0gbg4pai4cn7hdc1943aqpx4bn3vgc82zp93a1wl6bmmajv1da4b"; depends=[geojsonio httpuv jsonlite]; }; webmockr = derive2 { name="webmockr"; version="0.8.2"; sha256="06lqv3v095i51xsac8bvkjgd58l6a5azamchiip8m2y7q0nm4iw9"; depends=[base64enc crul curl fauxpas jsonlite magrittr R6 urltools]; }; webmorphR = derive2 { name="webmorphR"; version="0.1.1"; sha256="1f3sjzck4ys1knn2jmk472yww65wblrdwdlvn1gz2a00nc738rn4"; depends=[dplyr geomorph ggplot2 httr jsonlite magick progress rsvg]; }; @@ -18497,7 +18614,7 @@ in with self; { wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weed = derive2 { name="weed"; version="1.1.1"; sha256="18kz10c580a25cxcghvp81irwqncvhjan3y5gnzy8gxm894q3p7m"; depends=[countrycode dplyr forcats geonames ggplot2 here magrittr purrr readxl rgeos sf stringr tibble tidyr tidytext]; }; wehoop = derive2 { name="wehoop"; version="1.5.0"; sha256="0zlmsjw01ca0q9l7myq0sg6qaknc1i91s8jmf5b7v0crnmivd6rd"; depends=[cli data_table dplyr glue janitor jsonlite magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; - weibullness = derive2 { name="weibullness"; version="1.19.8"; sha256="19s44mxxcnhngifxshsyjr3a9zvbwywmqgby5dxd73yid1p2k9mr"; depends=[]; }; + weibullness = derive2 { name="weibullness"; version="1.22.12"; sha256="1xksidplbdx7p5phi66dpyca4n701zhxmp6zp78d9z9lh8k67zwx"; depends=[]; }; weibulltools = derive2 { name="weibulltools"; version="2.0.0"; sha256="1flgnsivam9vyrs6hwn3119s5bzczjm5qb1xjwydl1cd6r2984k5"; depends=[dplyr ggplot2 lifecycle magrittr plotly purrr Rcpp RcppArmadillo sandwich segmented SPREDA survival tibble tidyr]; }; weightQuant = derive2 { name="weightQuant"; version="1.0.1"; sha256="0v2wxgvv8v5filiabcd19bmcprfv3l8gg79v6s3c5wmnzir617s5"; depends=[doParallel foreach quantreg stringr]; }; weightedCL = derive2 { name="weightedCL"; version="0.5"; sha256="0gb9p3qvbnqmccsfi3a0hx6i67n5z9fg3jgjrgg6qikgngbq3sld"; depends=[MASS matlab rootSolve sure]; }; @@ -18525,7 +18642,7 @@ in with self; { whereami = derive2 { name="whereami"; version="0.1.9"; sha256="0mjq9haacsf0zkgh7xxx8dr67hnw5ijjdhaz8c69mfjmd2zfzfwq"; depends=[cli jsonlite rstudioapi]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whippr = derive2 { name="whippr"; version="0.1.2"; sha256="16xmbsjzzdf2s19ix655jqpy8v98c39lkllh390zsv9xb12rgryr"; depends=[broom cli dplyr ggplot2 glue lubridate magrittr minpack_lm nlstools patchwork pillar purrr readxl rlang stringr tibble tidyr usethis zoo]; }; - whisker = derive2 { name="whisker"; version="0.4"; sha256="1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks"; depends=[]; }; + whisker = derive2 { name="whisker"; version="0.4.1"; sha256="1g7jy6dnc5igs7yqy1n7cmy0ia8dm2yi3qj1mil2y0q88m4m2ldz"; depends=[]; }; whitebox = derive2 { name="whitebox"; version="2.2.0"; sha256="0l17wik30fbrr2b1hraqs55y76vcc2v826giq92rzgdzh0v7di3n"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.4.0"; sha256="1gc5pf4b9s8w4jh1wygyb9a9w6hi4zfd7ivlwshhzrmb43x5srsp"; depends=[corpcor]; }; @@ -18552,23 +18669,23 @@ in with self; { wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; - winch = derive2 { name="winch"; version="0.0.10"; sha256="1hv5b3cqvn4mgxfd62zwn56bwisqj13l5hmjfa1b0rjj82ck8591"; depends=[procmaps]; }; + winch = derive2 { name="winch"; version="0.0.11"; sha256="05yph3z34jsl8lgxd3wnq0in9l9ypl7qbiib1cngr1q0si2xvfp8"; depends=[procmaps]; }; windAC = derive2 { name="windAC"; version="1.2.9"; sha256="00jmgyzi3ars0pwxg5b1dy99pwwwiavzg672x4c46pr65k3iy957"; depends=[mvtnorm sf]; }; windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-5"; sha256="01hc0kcm7qfzk47rci6lfmrqs4zfj8z7abqydgi2ckq8n1k2pd0h"; depends=[lubridate]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; - wiqid = derive2 { name="wiqid"; version="0.3.1"; sha256="0ccx009r53yz52q3jjh6kify640qgc895y226p1gacnv9sdajssp"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; + wiqid = derive2 { name="wiqid"; version="0.3.3"; sha256="1d5bckkr6cnixccxaa14n7vbsya5cc00y9mryy1j69shhsmxp5ks"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; }; withr = derive2 { name="withr"; version="2.5.0"; sha256="1h4bzj0am9lawbh1cam1jmgk1xjmn9da14r90w3q984hswz7nc9p"; depends=[]; }; - wk = derive2 { name="wk"; version="0.7.0"; sha256="1pm2293xqcgjckghbf6q9sk7jh74njiynq3wqq1dbwigiz9jfhz2"; depends=[]; }; + wk = derive2 { name="wk"; version="0.7.1"; sha256="116kvg2a9gga14agqvmvj2rbgfpdyasbkjnfjcsw9a9dk0n7g9g5"; depends=[]; }; wkNNMI = derive2 { name="wkNNMI"; version="1.0.0"; sha256="0qpl1b2134kz9mjl38w93lp3g6kpv9ygv9hygpssm845k02hkw7c"; depends=[foreach infotheo]; }; wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wkutils = derive2 { name="wkutils"; version="0.1.2"; sha256="1b2sbq31z9bfqm6jim56r92ilrxf9hvfd5h9xfw94ypykybvr38n"; depends=[Rcpp tibble vctrs wk]; }; wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.7.0"; sha256="06jw2crz4dfm9xpivapc8ipjjiziqn2ahgn0ssgzagkmv3idc7h1"; depends=[numDeriv]; }; + wnl = derive2 { name="wnl"; version="0.7.1"; sha256="0191z30rq92xy2lzg6mpk4yvj67frfmqzavy7xvmsv96n4pcwbay"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.3"; sha256="0k4w6qbmwqd720dsslmb3xl53lr0b16rr0w9frybfq4046g9i2c6"; depends=[pscl]; }; wodds = derive2 { name="wodds"; version="0.1.0"; sha256="00rk7wmz0rknh4v9p0r6syi1c5dch7wkq7cz9zg6n8d72sia4azv"; depends=[dplyr glue magrittr purrr tibble]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; @@ -18592,10 +18709,10 @@ in with self; { wordspace = derive2 { name="wordspace"; version="0.2-8"; sha256="17fqd4zrsklv2ik3lg00x66yasfh1kyhs3k9ri6lrk56wwv6hzb2"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; workboots = derive2 { name="workboots"; version="0.2.0"; sha256="0n55iypiw59n1f09fbynsdznv5mz885rbz4gaqi48ig0hwz896b7"; depends=[assertthat dplyr generics lifecycle Metrics purrr rlang rsample tibble tidyr vip workflows]; }; workflowr = derive2 { name="workflowr"; version="1.7.0"; sha256="0j1ahxm7xjla1xa38dc8ykn1j5a4yw1p8ivjk3k3va25kam25cp3"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; - workflows = derive2 { name="workflows"; version="1.1.0"; sha256="0l5v5qmgj1qv2bk50kv59k2nydh1r97hmqffyxkfpkh2121b2qaq"; depends=[cli generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; + workflows = derive2 { name="workflows"; version="1.1.2"; sha256="1wlgx7gl4h9szw9lr6ck9mnkrflah0wfbs56fialbl7wd5jv6hcg"; depends=[cli generics glue hardhat lifecycle modelenv parsnip rlang tidyselect vctrs]; }; workflowsets = derive2 { name="workflowsets"; version="1.0.0"; sha256="12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq"; depends=[cli dplyr generics ggplot2 glue hardhat lifecycle parsnip pillar prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; workloopR = derive2 { name="workloopR"; version="1.1.4"; sha256="1gynlvmqxyibql5j3db9dwvc0jsc9jqzpy3d3gp43d5lcl11mcmq"; depends=[pracma signal]; }; - worldfootballR = derive2 { name="worldfootballR"; version="0.6.1"; sha256="0w1r7d2xsz0gavzq9yh7gpvkyrx8y9v1ppxg5pj8cxly0w20ikfq"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rstudioapi rvest stringi stringr tibble tidyr tidyselect withr xml2]; }; + worldfootballR = derive2 { name="worldfootballR"; version="0.6.2"; sha256="1s11qa30x2an8ndjahnx3wxbwf51xdwfqs42qw14wh83m35q2zn2"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rstudioapi rvest stringi stringr tibble tidyr tidyselect withr xml2]; }; worldmet = derive2 { name="worldmet"; version="0.9.6"; sha256="1yb8x9iv8ndnqlpadg1x9sxd48maw9b4ih03rkr508xn98xksyhb"; depends=[doParallel dplyr foreach leaflet openair purrr readr tidyr]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; @@ -18613,13 +18730,13 @@ in with self; { wql = derive2 { name="wql"; version="1.0.0"; sha256="1s702gvwx49wky2ylh8q5h1vmh6sls2pq69w6jcijh1qs587dngs"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.1"; sha256="128qhrv2zkl8hl906gf7snqkl4gic41brawcy3a6aq8c4j1dxjvm"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.10.1"; sha256="11w98d4h748sc8nfn6xcmsh8nqdxwvq72ygwcid6ijfq8i3rr0zg"; depends=[MASS]; }; - wrProteo = derive2 { name="wrProteo"; version="1.6.0"; sha256="0iq75zdip51aw8y37ckah1mddm69cp0lds2cj0xaavrdbaarww49"; depends=[knitr limma wrMisc]; }; + wrMisc = derive2 { name="wrMisc"; version="1.10.2"; sha256="1mz2a7bmzblky9z1d32zxnbdjiap6v8jhiah38lln2s4vrbx67yd"; depends=[MASS]; }; + wrProteo = derive2 { name="wrProteo"; version="1.7.0.1"; sha256="17lsq5zn74n5a4diaylz7fqc867dl14b2r4rkjxwm36vhx736h19"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.7"; sha256="0gap15hinsgfjrxajr9kvs0rp76gl5kk2dqs92s9mfyh10kxxqpa"; depends=[dplyr magrittr rlang tidyr]; }; wrappedtools = derive2 { name="wrappedtools"; version="0.8.0"; sha256="1dr70w2y556l664067crrl7ly68d1pb0chyz00cl1sfiyma7nj6x"; depends=[boot coin dplyr forcats ggplot2 glue kableExtra knitr lifecycle magrittr purrr rlang stringr tibble tidyr tidyverse]; }; wrapr = derive2 { name="wrapr"; version="2.0.9"; sha256="1swgf10vg9sh29mn4gsia1rjln47lrqsv765yl19hlpk85qwhsk4"; depends=[]; }; - wrassp = derive2 { name="wrassp"; version="1.0.1"; sha256="02f4r6ax91sxv05mjbz33g04i33gd3548zym5iszzx26mbr6rwkv"; depends=[tibble]; }; + wrassp = derive2 { name="wrassp"; version="1.0.2"; sha256="1zk2rwlm8baf5pyzlcdxbkp40bji3vb64ybiy9pk947gzhpzyz4i"; depends=[tibble]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; writexl = derive2 { name="writexl"; version="1.4.1"; sha256="1qhf7p14mijdyl5i40gfpzgvdflcs6s8xnwrabsnjxpa17xbamkn"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.1.1"; sha256="1q0nc08q8f3kl9yvcivzylykk1ar5j5dw3ian2y9nrzgzri5l10i"; depends=[logging Rcpp]; }; @@ -18633,6 +18750,7 @@ in with self; { wtest = derive2 { name="wtest"; version="3.2"; sha256="063ax9mbb2dy33l1cl533mjzpvhf2akw3613pklfjg6bhprlniz7"; depends=[]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wv = derive2 { name="wv"; version="0.1.1"; sha256="06xf3c97pjhln1v31waj8rmp4r0y2kp6v2x10pbpvi8m0nf5zfs1"; depends=[coda Rcpp RcppArmadillo simts]; }; + wwntests = derive2 { name="wwntests"; version="1.0.2"; sha256="0lp5xipf1lq8mlpdamsvan82s3fr3g5xbxpdnqjc68abnify0r8s"; depends=[ftsa MASS rainbow sde]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.21"; sha256="1033kz6zhbhd09dh40gp03dfy2kf9zskqh942i06jx1z2dvx3vvi"; depends=[crayon data_table tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.23"; sha256="1cxzh5yp6y2r5n6qkhb4g4dkbyw7mdnsfh883bhksk527ra4qaln"; depends=[crayon data_table R6 stringr tidyr]; }; wyz_code_rdoc = derive2 { name="wyz.code.rdoc"; version="1.1.19"; sha256="02k6wk45dn6i8kzxhgcxqxvrzxf063dny17jjnj83wsxx2b37jgv"; depends=[crayon data_table digest R6 stringr tidyr wyz_code_offensiveProgramming]; }; @@ -18648,15 +18766,15 @@ in with self; { xSub = derive2 { name="xSub"; version="3.0.2"; sha256="07mib63zbvffr4w8klpv017d13wvqy3mwrpssr0vydcj8475gjfx"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="1.1"; sha256="06y9qhly14y5r8d1g85jdzz8x5lwzfjkiy5zak6146mknl4nzz11"; depends=[data_table SACCR Trading]; }; xadmix = derive2 { name="xadmix"; version="1.0.0"; sha256="0vrk40q9nn40aisvgj3pq9q6z5kb68j614wpg7bx98fx3gqnxzxv"; depends=[dplyr forcats ggplot2 magrittr rlang stringr tidyr viridis]; }; - xaringan = derive2 { name="xaringan"; version="0.26"; sha256="1p9y6pjdpk4s5xz3zvmdzx9x8wla668cr075yaxc482kl7snskr6"; depends=[htmltools knitr rmarkdown servr xfun]; }; + xaringan = derive2 { name="xaringan"; version="0.27"; sha256="1f1xam86sgrdh0h1kgpl6yvfrhw1r22wkjl18jwx2qnrfd3bxwcx"; depends=[htmltools knitr rmarkdown servr xfun]; }; xaringanExtra = derive2 { name="xaringanExtra"; version="0.7.0"; sha256="1snj4yf5mxn419d3qbm2pixj7gvhmf133sxvjbirjrr3ib6iyn84"; depends=[htmltools jsonlite knitr uuid]; }; xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.2"; sha256="074lq9m61647ac7crjmpf8qjj4l60ps0ic4c4b83g47drar79v2z"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; - xefun = derive2 { name="xefun"; version="0.1.1"; sha256="1zqsh9i1ss39i9sm89b209affr68a2fx5wmjqnq37bgxp4wxs5zx"; depends=[data_table]; }; + xefun = derive2 { name="xefun"; version="0.1.2"; sha256="1i5l82q5xlgdq682103k84x1w8ly7a1ak5gbvbvx9ikwr42jz7ll"; depends=[data_table]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.34"; sha256="0gc5lbk73bf0yhvc7wwz7hbq39hvphd8xdsgwi2c125rxcgnrrsh"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.35"; sha256="04x6y7f3f105fzxn2kzmvfz0zqf2v28g8aqnsln6q9n4lm74vz45"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; xgboost = derive2 { name="xgboost"; version="1.6.0.1"; sha256="1gafjv6vcpny03lqw8s68xszalsylniavaqwsbzh46vyk4h9mscs"; depends=[data_table jsonlite Matrix]; }; xgxr = derive2 { name="xgxr"; version="1.1.1"; sha256="00fd9n2qivfxg2b7vynssc82afa7nskg4akk6cgxnyhcai5jbmra"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; @@ -18678,11 +18796,11 @@ in with self; { xnet = derive2 { name="xnet"; version="0.1.11"; sha256="18lda1gv53awsbkk5p4bzrbilndgybdz8xc6lhl6wy647fw9q9hv"; depends=[]; }; xoi = derive2 { name="xoi"; version="0.70"; sha256="1raa5kr3h62j1lvjb0mn973pknyw8caixfh78rhgrhzxiilllil8"; depends=[qtl]; }; xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; }; - xpectr = derive2 { name="xpectr"; version="0.4.2"; sha256="0pbpv3k1h7xglyry1pxjqvkbp6vhk2yl4nlvd5xwz29vlnda7gd8"; depends=[checkmate clipr dplyr fansi lifecycle plyr rlang rstudioapi testthat tibble withr]; }; + xpectr = derive2 { name="xpectr"; version="0.4.3"; sha256="0qpv2r4dz5g37v2b6y5jscsxm1hdmimq8pm0dwwf8df0pp351r3b"; depends=[checkmate clipr dplyr fansi lifecycle plyr rlang rstudioapi testthat tibble withr]; }; xplain = derive2 { name="xplain"; version="0.2.2"; sha256="152a83ckmhns6yniy87mmjva5bkv5x3phv63l1kkcmrr9bclfgz0"; depends=[httr RCurl readr XML]; }; xplorerr = derive2 { name="xplorerr"; version="0.1.2"; sha256="0sca6nngjs6f51di4dgzx868p75bzas0msr0kgivavsv6rj5fz0r"; depends=[Rcpp shiny]; }; xportr = derive2 { name="xportr"; version="0.1.0"; sha256="0dcjlc27v6a45gj8qfh6i31d7386kbs9w05mj74zx1apwn1x6j5m"; depends=[cli dplyr glue haven janitor magrittr purrr readr rlang stringr tidyselect tm]; }; - xpose = derive2 { name="xpose"; version="0.4.13"; sha256="0sbr5br8jzszn6j7jccrdfn95svdlqxn8xqjp29zdxnp3zjlkkd5"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; + xpose = derive2 { name="xpose"; version="0.4.14"; sha256="0ppnhnyi3xh7bcss6i1fpwz1rli3m5v20w3ia7azga09xfqycnyk"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose_nlmixr2 = derive2 { name="xpose.nlmixr2"; version="0.4.0"; sha256="0scq6brd7sn1ybmacxlpdlmkwxbn9sc2gpzw6438fwfjss6sza8s"; depends=[crayon dplyr ggplot2 magrittr nlmixr2est rlang stringr tibble tidyr vpc xpose]; }; xpose4 = derive2 { name="xpose4"; version="4.7.2"; sha256="149ridxvbbkyxlnyhvw31gh2574cdycrrn89qwzvi4b5wb0p7psi"; depends=[dplyr gam Hmisc lattice lazyeval readr survival tibble]; }; xptr = derive2 { name="xptr"; version="1.1.3"; sha256="0352vs8dz61hgpwnf3r9r9haz3adg2wk9qxzrv313p1fcyfjz91v"; depends=[]; }; @@ -18695,49 +18813,47 @@ in with self; { xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; xtensor = derive2 { name="xtensor"; version="0.13.2-0"; sha256="0jwmcrhdnj02f4qbwyf4z4rpgyrw7wc3m9fwqp8l5f57g5ywkjgf"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; - xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; }; xts = derive2 { name="xts"; version="0.12.2"; sha256="0hx7vh8cm4c80rnhwqg78l5xb0snvf4adrkbb74z93vmxgm7qa4w"; depends=[zoo]; }; xutils = derive2 { name="xutils"; version="0.0.2"; sha256="1h07gs8pj7hn64r35ld1j1zakc243aiiwdrz92viqrg7z75czdzl"; depends=[Rcpp]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; xxIRT = derive2 { name="xxIRT"; version="2.1.2"; sha256="0b8yv8ixmcjiv9hlvpfdknx815smy7df7f2ixifnvhxxafgf1fwq"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; yaConsensus = derive2 { name="yaConsensus"; version="1.0"; sha256="1srph1yc8lr00yvx6sjm0br9h2cq94xqb9yjxfb0bqvvmskp6s2s"; depends=[doParallel foreach pheatmap]; }; - yaImpute = derive2 { name="yaImpute"; version="1.0-32"; sha256="1zvkrmlj48ahg9jq0fkbn7j603fmmld57yc0gjfas2mqa7cfbvh8"; depends=[]; }; + yaImpute = derive2 { name="yaImpute"; version="1.0-33"; sha256="0b2i0aymwb150068ji27i574p8lf8566cy6amppgzj8vxdi54naq"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.4-2"; sha256="197iv7qcbp9xx8kmpwb98acpkgzn9m7sncn6qi7k0chjx78095ws"; depends=[]; }; yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yahoofinancer = derive2 { name="yahoofinancer"; version="0.1.0"; sha256="1zr5hpafqzx6h9qfx7b1ji19kzkh19gz1h1x37rx1256anrc07zq"; depends=[httr jsonlite lubridate magrittr purrr R6 stringr]; }; yaml = derive2 { name="yaml"; version="2.3.6"; sha256="09msw6k0hsazjna53ya3c6p8alfajs7cw5k2rm62xvslcs6rvlax"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="0.9.8"; sha256="0sc6mkqdfzmv9y75b0kqxly3b6amhj899l0dqprlz1ncrx3d2bb3"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; - yamlme = derive2 { name="yamlme"; version="0.1.1"; sha256="1cknx8ndcb9rz1j7z27244vba8hxyh5sa9zwsv6rwk9g1c52vmyg"; depends=[]; }; + yamlet = derive2 { name="yamlet"; version="0.10.0"; sha256="1snsvfshj7xw4lpzk4jgfpzzcqgxmy80jppqig5k27kk3v7a53lf"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; + yamlme = derive2 { name="yamlme"; version="0.1.2"; sha256="1019nzchqif4r3c7ywq23bjx711g359q44s8jy0rxyv03rij6xh9"; depends=[rmarkdown yaml]; }; yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; }; yaps = derive2 { name="yaps"; version="1.2.5"; sha256="0309vc67v5kfbdcah5gnvdqwdxir4k1ik47dw6msw2hvg6lpqvqf"; depends=[circular cowplot data_table ggplot2 ggrepel nloptr plyr Rcpp RcppEigen reshape2 splusTimeSeries tictoc TMB viridis zoo]; }; yardstick = derive2 { name="yardstick"; version="1.1.0"; sha256="0bcirq9mp7c6kwx563nnsd4lk33xk0rfaakj1xj5r8pzmrcgbikj"; depends=[dplyr generics hardhat rlang tidyselect vctrs]; }; yarr = derive2 { name="yarr"; version="0.1.2"; sha256="16q109jrydckz7s1rkmr2sh8q92cgr1c534fvpbh3h0bc3fvvf8g"; depends=[]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; - yatah = derive2 { name="yatah"; version="0.1.0"; sha256="0ayy0h399g3csn106vvq6j4h6w0sgzw33b7gj1hk05nc8hdzrmna"; depends=[ape purrr stringr]; }; + yatah = derive2 { name="yatah"; version="0.2.1"; sha256="0cckmslzm19kg7vkv28aq8h4yx8m2khqs9d6y98gwl64qrjiz42g"; depends=[ape purrr stringr]; }; ycevo = derive2 { name="ycevo"; version="0.1.2"; sha256="1s61rdsll7b9dyc1lamyp4mlsw7vyf9lshw2dg3x5i3xf5rmrrsd"; depends=[dplyr magrittr Matrix Rcpp RcppArmadillo rlang]; }; yesno = derive2 { name="yesno"; version="0.1.2"; sha256="1n9v8m1wkk9p2ahl7d1khbffxmshv68q1v44v04y4v1k6qjvm0i2"; depends=[]; }; - yfR = derive2 { name="yfR"; version="1.0.2"; sha256="11xm37i2fdvsk56q42kg1rdy82czfxl83p17c96bh63vhpj9iqp9"; depends=[cli curl dplyr furrr future humanize lubridate magrittr purrr quantmod readr rvest stringr tibble tidyr zoo]; }; + yfR = derive2 { name="yfR"; version="1.0.4"; sha256="1zqsa6d69klwz95q47fkr5vh6vzcx48ypfyhwbwz7r2krbma8lbh"; depends=[cli dplyr furrr future humanize lubridate magrittr pingr purrr quantmod readr rvest stringr tibble tidyr zoo]; }; yhat = derive2 { name="yhat"; version="2.0-3"; sha256="00cbzj2bvr2pfspycqyf7jrdqyfg63zx25b6r9k3khafvn0ch7h1"; depends=[boot miscTools plotrix yacca]; }; yhatr = derive2 { name="yhatr"; version="0.15.1"; sha256="18g2cr1kjxnfw6cwzl62ynppfv1zz732kbx18zq8918l85kx6wbw"; depends=[httr jsonlite stringr]; }; yll = derive2 { name="yll"; version="1.0.0"; sha256="0lf3cd6pfzki29nk2iy0vd6v4dw6zlsbrjh2839zq5vlpiimsvck"; depends=[]; }; ymd = derive2 { name="ymd"; version="0.0.1"; sha256="02cd7y28s406yzvax2d47xwrsqyd8mhhb879ywjqfj6lvwf3jvkd"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.7"; sha256="127rh8mfff0ii6wcd7iaaz60vlkynjlrs188wwcap8l2qgv67idy"; depends=[crayon fs glue magrittr purrr rlang rmarkdown rstudioapi stringr usethis whoami withr yaml]; }; - ympes = derive2 { name="ympes"; version="0.2.0"; sha256="0mqk2w7dwjzaas2ajqd3qg22dz66w2s6wl9xzy140qmnv76vzpvh"; depends=[]; }; + ympes = derive2 { name="ympes"; version="0.2.1"; sha256="018wvzaxcr0npgjvdwmgjm8cdkd449lpcmppdwy461zdxs8p1wrl"; depends=[]; }; yorkr = derive2 { name="yorkr"; version="0.0.34"; sha256="06y410klfnq2n0lgilgdgmh2cjsz1vphy3wvmjgcpbld89yv0q7g"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; ypr = derive2 { name="ypr"; version="0.6.0"; sha256="0hn4zbg270p8yg4wxcszwfc0vsf2mb21lkqi1745000rh5cbz8sa"; depends=[chk ggplot2 lifecycle purrr tibble tidyplus yesno]; }; ypssc = derive2 { name="ypssc"; version="1.1.0"; sha256="0fpph19amj1cafcbh5k6s75pi7nahzgfvnsbs9i5644gv43iavbj"; depends=[dplyr eulerr Peptides readxl spelling stringr svDialogs]; }; - yuima = derive2 { name="yuima"; version="1.15.15"; sha256="19cymdqd7bpnlhy61ch1bp4pd43kzrhrql1l7vsddkiq26xx1isr"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; + yuima = derive2 { name="yuima"; version="1.15.18"; sha256="0jvx8rfpq6xkzfqj2nb90sq8mn90vfj839f7n23n5r11sp4l7jaz"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.1"; sha256="1sl45kmqqq7hg3lkpn3cy70f409fwsgg76gjldx1l4cvmyzyf9hl"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yulab_utils = derive2 { name="yulab.utils"; version="0.0.5"; sha256="0sq5wc0mp84h6fs4wa2smvf7dcn0p0xarzb2ljvqc3p4vb2lvkbf"; depends=[]; }; yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; zCompositions = derive2 { name="zCompositions"; version="1.4.0-1"; sha256="1rrhja9iaq123r2gqw1bzrn1ri0s3z4wzq8p0sfcr1yb6pv13vik"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; - zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; - zcurve = derive2 { name="zcurve"; version="2.1.2"; sha256="0j5adicqvdbvqq70163ibv09qaxzhdrphh4xgjvipvw9akmmcy0j"; depends=[evmix nleqslv Rcpp Rdpack]; }; + zcurve = derive2 { name="zcurve"; version="2.2.0"; sha256="0hxjizans42y936pfmcwgkjc6kk9c61xz8b8lglpzzqz48fyvcaw"; depends=[evmix nleqslv Rcpp Rdpack]; }; zdeskR = derive2 { name="zdeskR"; version="0.2.0"; sha256="0kbdkxly20ai3nfwwqj04gncbg1g3sh9gy323hsif919wpid8qzg"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.2.0.0"; sha256="0nd44j2zxsagg9sav3lm8gzbyq8cdk1kfgbn503hb3a58kcqyg0d"; depends=[data_table ggplot2 Rcpp reshape2]; }; @@ -18753,11 +18869,10 @@ in with self; { zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; zip = derive2 { name="zip"; version="2.2.2"; sha256="194f19649jqw8wa2bd1kj3873hqnqxsrbqdwnvlzngi8pcixwv71"; depends=[]; }; zipR = derive2 { name="zipR"; version="0.1.1"; sha256="1aaw3dslhsw3zgxvkc1v60vsk44x64i4qmjwx0gq4f7dad1rbiqp"; depends=[]; }; - zipangu = derive2 { name="zipangu"; version="0.3.1"; sha256="0cl9zzl203nc7yf2v7a1mz19aqs3wlxc3d8l3ajszxy5pxvgfxdm"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr memoise purrr rlang stringi stringr tibble]; }; + zipangu = derive2 { name="zipangu"; version="0.3.2"; sha256="0l5jhv0xl0rh7z546zn2p3gaci1v7d9d3ha6040kixclkmhb5dp6"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr memoise purrr rlang stringi stringr tibble]; }; zipcodeR = derive2 { name="zipcodeR"; version="0.3.5"; sha256="1fmjqfhxd0lgsn6l5jvi3qzhbq9865xcps3jm9iy72jx7jxr59lk"; depends=[curl DBI dplyr httr jsonlite raster rlang RSQLite stringr tidycensus tidyr]; }; zipfR = derive2 { name="zipfR"; version="0.6-70"; sha256="15ng7rj7qbgxajx8jb9kv04xmbidg9wwzxr2xaskmlaxrxlqac8c"; depends=[]; }; zipfextR = derive2 { name="zipfextR"; version="1.0.2"; sha256="03rlvvw7rfbhsbwd5njmgkkkrxq1lgjdydmpkn6h1hi97pc0gbhh"; depends=[copula tolerance VGAM]; }; - ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; }; zipsae = derive2 { name="zipsae"; version="1.0.2"; sha256="03kwfpjpwxqlphdy7xyhsf7d0mcg67jhvm7yz4i73ckmjdmq7wrd"; depends=[]; }; zlog = derive2 { name="zlog"; version="1.0.0"; sha256="1d5j31p0h3rrn230087h3ngpvwknlisjv0f1qdbicdj9m177spci"; depends=[]; }; zmisc = derive2 { name="zmisc"; version="0.2.2"; sha256="154qm0f2ds40gwxqv30nf2px26clkf2lw2y51ak12gxpj08b6mix"; depends=[]; }; @@ -18787,6 +18902,7 @@ in with self; { AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; broken = true; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; broken = true; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; broken = true; }; + APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; broken = true; }; APML = derive2 { name="APML"; version="0.0.5"; sha256="1md9vryq2qf4cx3jrgh7p2j87qc8iil1cszw0vay5ylzaw4bz1hl"; depends=[dplyr fastDummies ggplot2 h2o performanceEstimation pROC survival]; broken = true; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; broken = true; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; broken = true; }; @@ -18796,6 +18912,7 @@ in with self; { AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; broken = true; }; AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; broken = true; }; + AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; broken = true; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; broken = true; }; AirSensor = derive2 { name="AirSensor"; version="1.0.8"; sha256="0wpfg3mry1vdyd9v1981hasizj1mn5wy60ig9swxlqdm7j11wxan"; depends=[countrycode cowplot dplyr dygraphs geodist geosphere GGally ggmap ggplot2 gridExtra httpcode httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaLocationUtils MazamaSpatialUtils openair PWFSLSmoke RColorBrewer readr rlang scales seismicRoll sp stringr tibble tidyr tidyselect worldmet xts zoo]; broken = true; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; broken = true; }; @@ -18818,21 +18935,21 @@ in with self; { BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; broken = true; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; broken = true; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; broken = true; }; - BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; broken = true; }; BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; + BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.3"; sha256="1dnylvag24zqp93acdbn0ilbdzbn250pjjp6hjdd9d1zvla2ck85"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; broken = true; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; broken = true; }; + BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; broken = true; }; BPmodel = derive2 { name="BPmodel"; version="1.1.2"; sha256="1fmiz06ci3x4ljaap6famnz82mrf2rcdg4d282x6wghpy4yv4afa"; depends=[Deriv dplyr extraDistr gamlss gamlss_dist ggplot2 pracma]; broken = true; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; broken = true; }; - BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; broken = true; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; broken = true; }; + BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; broken = true; }; + BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; broken = true; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; broken = true; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; broken = true; }; - BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; broken = true; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; broken = true; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; broken = true; }; - BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.1"; sha256="11l6aabnagdfsqgkx3h6h6jywp959h7882v2n81hz3mqdx825y0d"; depends=[coda DescTools fda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag tidyverse]; broken = true; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="2.0"; sha256="1b4h6s3cb8904slyy2pq3dzy3941p87s32zacmpwrnp7yvwxzl3d"; depends=[bit ff mvnfast]; broken = true; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; broken = true; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; broken = true; }; @@ -18842,7 +18959,10 @@ in with self; { BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; + BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; broken = true; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; + Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; broken = true; }; + Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; broken = true; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; broken = true; }; BlockFeST = derive2 { name="BlockFeST"; version="2.0"; sha256="1fcl3yc1cf09znqbj787d3fd2kl5rp63la7pxawsgmap7nxwkp65"; depends=[BASIX]; broken = true; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; broken = true; }; @@ -18856,8 +18976,9 @@ in with self; { CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; broken = true; }; CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; broken = true; }; CEC = derive2 { name="CEC"; version="0.10.3"; sha256="0yypiy5xxrlckly4qpnf1wxg4hwza4y4da6y0jz4ldz918vskaci"; depends=[]; broken = true; }; - CGNM = derive2 { name="CGNM"; version="0.4.0"; sha256="0z9y6z2lpzzq7jzknfc84npraimkvlfm0sr5k9h3h3qjdxwfy2wk"; depends=[ggplot2 MASS]; broken = true; }; + CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; broken = true; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; broken = true; }; + CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; broken = true; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; broken = true; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; broken = true; }; @@ -18894,6 +19015,7 @@ in with self; { CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; broken = true; }; CompLognormal = derive2 { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; broken = true; }; CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-6"; sha256="1yr1d97l6yc07jwh30j26gda15pjfcwx2z3w55dh3nr15vds0qcp"; depends=[fields mapproj maps RandomFields scatterplot3d spam]; broken = true; }; + ComparisonCR = derive2 { name="ComparisonCR"; version="1.0.4"; sha256="10xw3ppkzpc3njc409ln7g6bg33csf2ilw3f11hn60ry5xbnn82y"; depends=[boot CIFsmry cmprsk]; broken = true; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; broken = true; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; @@ -18906,6 +19028,7 @@ in with self; { CoxPhLb = derive2 { name="CoxPhLb"; version="1.2.0"; sha256="0jlh2k5ygj896sfx7dcw5qlb80bl64rsvqfayv0c6a107bmrzsw4"; depends=[survival]; broken = true; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; broken = true; }; CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; broken = true; }; + CropScapeR = derive2 { name="CropScapeR"; version="1.1.4"; sha256="0rs428sz2fd4ysz1k5i2zkjg4vga2rczlbdd042sdjq501nk2462"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; broken = true; }; D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; broken = true; }; @@ -18935,11 +19058,12 @@ in with self; { DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; broken = true; }; DepCens = derive2 { name="DepCens"; version="0.2.1"; sha256="0dqn8y4ljviy7dqknn17hi3ax2576y9w3bgkfzdg04x9czbyg450"; depends=[dlm Formula matrixStats rootSolve survival]; broken = true; }; + DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; broken = true; }; + DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; broken = true; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; broken = true; }; - DistatisR = derive2 { name="DistatisR"; version="1.0.1"; sha256="0myzfki8yrk0nhgdgsqs4wjbqhzmkdil1g005hc7p4lz3gi09bfx"; depends=[car prettyGraphs]; broken = true; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; broken = true; }; DoE_multi_response = derive2 { name="DoE.multi.response"; version="0.1.0"; sha256="1289jlp10999kvyg5adw3dyc2mhh20i6biyqjbxd6g80a8dajknx"; depends=[DoE_wrapper]; broken = true; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; broken = true; }; @@ -18947,19 +19071,21 @@ in with self; { DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; broken = true; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; broken = true; }; DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; broken = true; }; + DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; broken = true; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; broken = true; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; broken = true; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; broken = true; }; EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; broken = true; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; broken = true; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; broken = true; }; + EL = derive2 { name="EL"; version="1.1"; sha256="0a6zbsq37miy7mv1b2gn3nlddlxpl6v5338lqxa2hn8ykj4vbs63"; depends=[]; broken = true; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; broken = true; }; + EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; broken = true; }; EPP = derive2 { name="EPP"; version="0.3.6.1"; sha256="015hp5f3nrf0hqi11cgsi43a97h9cvny4d75hfjd10zf0fj261h9"; depends=[assertthat curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp]; broken = true; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; broken = true; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; broken = true; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; broken = true; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; broken = true; }; - EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.0"; sha256="0nixw872ic7jmy2z4wasks3r6y01mx8k7zwfzi72s809jgx1njmi"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; broken = true; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; broken = true; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; broken = true; }; ElectionsLATAM = derive2 { name="ElectionsLATAM"; version="0.1.1"; sha256="0xs3qff1ayq12cr7xszxvzmyihs4p9vsyrwcglll794vj096ylz4"; depends=[boot dplyr foreign lgr magrittr networkD3 R6 readr readxl testthat webshot]; broken = true; }; @@ -18971,17 +19097,16 @@ in with self; { Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; broken = true; }; ExGaussEstim = derive2 { name="ExGaussEstim"; version="0.1"; sha256="167y82sqqwmjaxmxag01nvg27c3gb58x8zbjr8ng01ygjc5rpkcb"; depends=[fitdistrplus gamlss_dist HI invgamma nloptr pracma]; broken = true; }; - ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.15"; sha256="1ljswn8bimzhl7dxy7nb2jmwq9v7vpp4y1jynp8djrjpdx9wnaqi"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; broken = true; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; broken = true; }; FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; broken = true; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; broken = true; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; broken = true; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; broken = true; }; FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; broken = true; }; + FORTLS = derive2 { name="FORTLS"; version="1.1.0"; sha256="08g674ig8fn2mlwqrhd5lkvy64n9jqvla7nflswpbp4vhjgcmy9k"; depends=[dbscan Distance htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sf sp tidyr VoxR vroom]; broken = true; }; FREG = derive2 { name="FREG"; version="1.1"; sha256="1f9ss0aj6w6n0x4np6wi3ynhhcibr5zk54gzbkgpk6q3y7pv0qs1"; depends=[fda]; broken = true; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; broken = true; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; broken = true; }; - FamEvent = derive2 { name="FamEvent"; version="2.1"; sha256="1bwi91z8xyb3xj8fwbshgdq7l1pik2dsy6ljzwy1ymd0xz0q7f5a"; depends=[eha kinship2 MASS pracma survival truncnorm]; broken = true; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; broken = true; }; FastHCS = derive2 { name="FastHCS"; version="0.0.7"; sha256="0l3fi3siwg2jhsj0jbhgccx8pnwd8h8f4z37g1najb41hw8dwn8d"; depends=[matrixStats Rcpp RcppEigen]; broken = true; }; FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; broken = true; }; @@ -18993,6 +19118,7 @@ in with self; { FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; broken = true; }; FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; broken = true; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; broken = true; }; + ForestGapR = derive2 { name="ForestGapR"; version="0.1.6"; sha256="1m3fn7gqwch14nilid9fmxwlm4x9qslr3czb44iwiff9i69csnvk"; depends=[igraph poweRlaw raster rgeos sp spatstat_core spatstat_geom VGAM viridis]; broken = true; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; broken = true; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; broken = true; }; FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; broken = true; }; @@ -19014,20 +19140,21 @@ in with self; { GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; broken = true; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; broken = true; }; GaSP = derive2 { name="GaSP"; version="1.0.1"; sha256="0l1a5w3wphm1748qmh3abv9yd1w92wg7irqpgdg6pc7598dvlkr9"; depends=[]; broken = true; }; - GauPro = derive2 { name="GauPro"; version="0.2.4"; sha256="1fll93r25293xdwv28g9my627f736kawr0ji1vxfc3q275zfy7lg"; depends=[lbfgs R6 Rcpp RcppArmadillo]; broken = true; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; broken = true; }; GenHMM1d = derive2 { name="GenHMM1d"; version="0.1.0"; sha256="0liqfjx17xs8si15yrb4032ac33ibxn2xm010b244gfhl1wr2ar5"; depends=[actuar doParallel EnvStats extraDistr foreach ggplot2 matrixcalc reshape2 rmutil ssdtools VaRES VGAM]; broken = true; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; broken = true; }; - GenWin = derive2 { name="GenWin"; version="0.1"; sha256="0jm537i4jn3azdpvd50y9p0fssfx2ym2n36d3zgnfd32gqckz3s4"; depends=[pspline]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; broken = true; }; + GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; broken = true; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.9.7"; sha256="196shxbrcgiwaa7aav2aipsbj1smrkbhinn44aw9qfvz2x9zdz0m"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; broken = true; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; broken = true; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; broken = true; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.1.1.992"; sha256="0xzz5sg9ywmpwym50hbvb1z7f8wwbbr4shiir8kj4mwf22snsk6d"; depends=[cqn data_table dplyr magrittr plyr topconfects]; broken = true; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; broken = true; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; broken = true; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; broken = true; }; - GroupSeq = derive2 { name="GroupSeq"; version="1.4.0"; sha256="0dgm53wagwfsmv308ipx7v29qh7p5xwvbnni5zrc3a575ch1b7hb"; depends=[container mvtnorm tcltk2]; broken = true; }; + GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; broken = true; }; + GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; broken = true; }; GuessCompx = derive2 { name="GuessCompx"; version="1.0.3"; sha256="1xbkh1wh2z0n964w8lwi7q4rr7mls0awf5k7n5jjklhq4b6gswic"; depends=[boot dplyr ggplot2 lubridate reshape2]; broken = true; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; broken = true; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; broken = true; }; @@ -19061,7 +19188,7 @@ in with self; { ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; broken = true; }; ICBayes = derive2 { name="ICBayes"; version="1.2"; sha256="1hdh7g4nk6yy0xz9564vpvh1blrw30lvyw2wc5mmgn78kwjqla34"; depends=[coda HI survival]; broken = true; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; broken = true; }; - ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; + IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; broken = true; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; broken = true; }; IGP = derive2 { name="IGP"; version="0.2.0"; sha256="1hsyl6cjm84w4f4v0gw4hi5y483r8v78xb3k3h1ixix9ymjqr8y5"; depends=[R6 reticulate]; broken = true; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; broken = true; }; @@ -19080,6 +19207,7 @@ in with self; { IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; broken = true; }; Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; broken = true; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; broken = true; }; + InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; broken = true; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; broken = true; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; broken = true; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; broken = true; }; @@ -19113,8 +19241,8 @@ in with self; { LPTime = derive2 { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; broken = true; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; broken = true; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; broken = true; }; - LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; broken = true; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; broken = true; }; + LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; broken = true; }; LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; broken = true; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; broken = true; }; LogisticDx = derive2 { name="LogisticDx"; version="0.3"; sha256="1hry32grqwlarp0cplx8szf4pf7ml1nxd11ahffmr72ihcv5ckga"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; broken = true; }; @@ -19133,6 +19261,7 @@ in with self; { MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; broken = true; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; broken = true; }; MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; broken = true; }; + MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; broken = true; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; broken = true; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; broken = true; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; broken = true; }; @@ -19152,9 +19281,11 @@ in with self; { MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; broken = true; }; + MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; broken = true; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; broken = true; }; MPAgenomics = derive2 { name="MPAgenomics"; version="1.2.3"; sha256="0096jy94zpbbd2n862hc4m3i4s7vpl2q3vybx96hvv6qi1ny47cm"; depends=[changepoint glmnet HDPenReg R_utils spikeslab]; broken = true; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; broken = true; }; + MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; broken = true; }; MPkn = derive2 { name="MPkn"; version="0.1.0"; sha256="0nvd6sv1wypcmphm0wcymbibcxrqzx3c9s9b191p1pmxyz607vxv"; depends=[]; broken = true; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; broken = true; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; broken = true; }; @@ -19163,6 +19294,7 @@ in with self; { MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; broken = true; }; + MagmaClustR = derive2 { name="MagmaClustR"; version="1.0.1"; sha256="0gf0xlsh5wkvbp331z7c55ypfkg9rmmakykbqliswiyrfgbczk9g"; depends=[broom dplyr ggplot2 magrittr mvtnorm Rcpp rlang tibble tidyr tidyselect]; broken = true; }; Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; broken = true; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; broken = true; }; MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; broken = true; }; @@ -19182,10 +19314,10 @@ in with self; { Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; broken = true; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; broken = true; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; broken = true; }; - MfUSampler = derive2 { name="MfUSampler"; version="1.0.6"; sha256="0lw60dnlkcs59wf5yzqj3yq8k529s5mrjj33nyvzqgqqmln9v1x8"; depends=[ars coda HI]; broken = true; }; MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; broken = true; }; MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; broken = true; }; Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; broken = true; }; + MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; broken = true; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; broken = true; }; ModelMap = derive2 { name="ModelMap"; version="3.4.0.2"; sha256="1vca7wri0djk4v0gjnivg4k8qplrq0qlhq7vy801w8ffdyg86qag"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; broken = true; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; broken = true; }; @@ -19213,6 +19345,7 @@ in with self; { NTS = derive2 { name="NTS"; version="1.1.2"; sha256="02gh9yqflwgqws7a14wwb1y7qx0whw4ss1kkfgh9jp6bxc2dclnf"; depends=[dlm MASS MSwM Rdpack tensor]; broken = true; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; broken = true; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; + NetLogoR = derive2 { name="NetLogoR"; version="0.3.11"; sha256="0pppcpij4wn1gig7lyh122x52dx8x1dy98v5cphmrap8mpj4x7h2"; depends=[abind CircStats data_table matrixStats quickPlot raster sf sp SpaDES_tools]; broken = true; }; NetworkReg = derive2 { name="NetworkReg"; version="1.0"; sha256="0ymbigvl1n5348g77jqs1bcda00kdqrm7zifc0ibh5mwsrx6cmds"; depends=[Matrix randnet RSpectra]; broken = true; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; broken = true; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; broken = true; }; @@ -19238,6 +19371,7 @@ in with self; { OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; broken = true; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; broken = true; }; + PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; broken = true; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; PCObw = derive2 { name="PCObw"; version="0.0.0"; sha256="1mz9fpd8k0fs14gvs9bhzrpydz200fsg52njaw2nr08184q78r4y"; depends=[Rcpp RcppEigen]; broken = true; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; broken = true; }; @@ -19257,6 +19391,7 @@ in with self; { PathSelectMP = derive2 { name="PathSelectMP"; version="1.1"; sha256="036b70bpylmibny6dny79f7gdzn78arqgl2hfs031vygw63yyh9b"; depends=[mice MplusAutomation]; broken = true; }; PatternClass = derive2 { name="PatternClass"; version="2.0.1"; sha256="1xwlk6shms38nqxad3d15254wgnkfzy7jyf5w9bbm96kg05mndbz"; depends=[landscapemetrics raster]; broken = true; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; broken = true; }; + PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; broken = true; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; broken = true; }; PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; broken = true; }; PivotalR = derive2 { name="PivotalR"; version="0.1.18.5"; sha256="1xcr7769d9jixq0lbc89jqzzxnnzxb8gjlws2l6cjm40hcid2yc9"; depends=[Matrix semver]; broken = true; }; @@ -19264,6 +19399,7 @@ in with self; { PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; broken = true; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; broken = true; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; broken = true; }; + PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; broken = true; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; broken = true; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; broken = true; }; PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; broken = true; }; @@ -19274,6 +19410,7 @@ in with self; { PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; broken = true; }; QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; broken = true; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; broken = true; }; + QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; broken = true; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; broken = true; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; broken = true; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; broken = true; }; @@ -19294,6 +19431,7 @@ in with self; { RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; broken = true; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; broken = true; }; + REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; broken = true; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; broken = true; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; broken = true; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; broken = true; }; @@ -19311,9 +19449,10 @@ in with self; { ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; broken = true; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; broken = true; }; RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; broken = true; }; - RRreg = derive2 { name="RRreg"; version="0.7.3"; sha256="1nk2gg41bdhfnz7plkj4rnzl40sd6jd5z9843kxijp9ymagimwx4"; depends=[doParallel foreach lme4]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; broken = true; }; + RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; broken = true; }; + RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; broken = true; }; RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; broken = true; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; broken = true; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; broken = true; }; @@ -19327,8 +19466,8 @@ in with self; { Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; broken = true; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; broken = true; }; RandomFields = derive2 { name="RandomFields"; version="3.3.14"; sha256="0c5r7l642cw56km56ijachnqhjh5k0izy03cl14rvbwkpywh09i4"; depends=[RandomFieldsUtils sp]; broken = true; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.5"; sha256="0bjfz3bla6pr7wq4mqqcd4gmxqdx32gci4f71arfski31yx8ihlc"; depends=[]; broken = true; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; broken = true; }; - RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; broken = true; }; RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; broken = true; }; @@ -19349,12 +19488,13 @@ in with self; { RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; broken = true; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; broken = true; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; broken = true; }; + ReorderCluster = derive2 { name="ReorderCluster"; version="2.0"; sha256="0zq143xvv2br7016f9b1501ymcpkjqm3al1dn5qfm21axyi2p1iq"; depends=[gplots gtools Rcpp]; broken = true; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; broken = true; }; - RevGadgets = derive2 { name="RevGadgets"; version="1.0.0"; sha256="0k17flvax4cq9cvl3fsyv5ya0bndikxbzdmk87v5xz3czf31kk81"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape tibble tidyr tidytree treeio]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; broken = true; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; broken = true; }; + Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; broken = true; }; Rmagic = derive2 { name="Rmagic"; version="2.0.3"; sha256="0g2f887v820rjyjzcahfrnjvif8iwbhnfnjpd4ib3d9lps69agx1"; depends=[ggplot2 Matrix reticulate]; broken = true; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; broken = true; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; broken = true; }; @@ -19364,16 +19504,18 @@ in with self; { RoughSetKnowledgeReduction = derive2 { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; broken = true; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; broken = true; }; Rpvt = derive2 { name="Rpvt"; version="0.1.1"; sha256="0ggd6ikp2s9z4086y8w3qzb9jcyyqpby41p3ayjwam94skh154mf"; depends=[Rcpp RcppArmadillo Rdpack]; broken = true; }; - RsSimulx = derive2 { name="RsSimulx"; version="2.0.0"; sha256="11ji1fvf6rclzh8yw1d7d4zkfzsyw4jsfwyhxlx9j0kqyr0jz5bc"; depends=[ggplot2 gridExtra]; broken = true; }; RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; broken = true; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; broken = true; }; + Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; broken = true; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; broken = true; }; + RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; broken = true; }; RxODE = derive2 { name="RxODE"; version="1.1.5"; sha256="055g910dwn3v64mqqaidxhk4n6kwfyq3qpvp1grppzz50a0sz2zj"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; broken = true; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; broken = true; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; broken = true; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; broken = true; }; SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; broken = true; }; SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; broken = true; }; + SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; broken = true; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; broken = true; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; broken = true; }; SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; broken = true; }; @@ -19415,20 +19557,27 @@ in with self; { SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; broken = true; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; broken = true; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; broken = true; }; + SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; broken = true; }; ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; broken = true; }; SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; broken = true; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; broken = true; }; + SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; broken = true; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; broken = true; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; broken = true; }; SolveRationalMatrixEquation = derive2 { name="SolveRationalMatrixEquation"; version="0.1.0"; sha256="1m0b4sb247k6mlagvs4nj42ga9p48g9736lmhar7v1c5qhi7pw3v"; depends=[]; broken = true; }; - SourceSet = derive2 { name="SourceSet"; version="0.1.3"; sha256="159kg4pna24yihkghxc2k5f56dqk8aypxcmj1whgnajmgab29ry1"; depends=[gRbase gtools igraph plyr progress reshape2 scales]; broken = true; }; + SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.9"; sha256="11acb05b957qwbii701y1b4lvcnvmiixkrlmqkccc8n9icqq107n"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; broken = true; }; + SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.4"; sha256="0ly411y95rcm30slaj02vn7clmyq3dvinzg1x40vbsqzcjjg1h6l"; depends=[magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; broken = true; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="1.1.0"; sha256="0rmdwyk4733skf3mgi879lcg5hjiv72mf96yby3a0x9v2lzlzbv7"; depends=[crayon data_table fastdigest igraph lobstr qs quickPlot raster reproducible Require whisker]; broken = true; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="1.0.0"; sha256="1p1mj9gfgikqng5p9yj01ykxnrqvxcgd6ghi7amgqlkhv9mbjwhi"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp Require rgeos sp]; broken = true; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0.1"; sha256="0w2jxaz2kxfksyss5vy6xy499p8jg8lpqlykwgm2srp1fd2l3rs9"; depends=[Rcpp RcppArmadillo]; broken = true; }; SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; broken = true; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; broken = true; }; SpiceFP = derive2 { name="SpiceFP"; version="0.1.1"; sha256="080640q212lf1jwcrab9dcj26gazmvvxhjg797s1s5pnmax57m6n"; depends=[doParallel foreach genlasso Matrix purrr stringr tidyr]; broken = true; }; + Spillover = derive2 { name="Spillover"; version="0.1.0.2"; sha256="0a9gvr2p4xdd47k8vfjyq952svfxvfvqzp6bkbsjj0mdjvjq3kaj"; depends=[dplyr fastSOM ggplot2 tidyr vars zoo]; broken = true; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; broken = true; }; StVAR = derive2 { name="StVAR"; version="1.1"; sha256="0wz5f5i9927fs1s8yczwqs022k912220m28l1sv5f0r081iv656i"; depends=[ADGofTest matlab MCMCpack numDeriv]; broken = true; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; broken = true; }; @@ -19441,13 +19590,14 @@ in with self; { SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; broken = true; }; SuperPCA = derive2 { name="SuperPCA"; version="0.4.0"; sha256="0bpcxg9rh3ig5fzml026glws13daf5hiqbvdy7hsriv8y8qlxnfk"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; broken = true; }; SurfaceReconstruction = derive2 { name="SurfaceReconstruction"; version="0.1.0"; sha256="0xgzr0hl6imgyq0ljyqipjkdjbyc0pz35z1k20b5gbz0b6rfz4c9"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; - SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; broken = true; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; broken = true; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; broken = true; }; SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; broken = true; }; + SurvivalPath = derive2 { name="SurvivalPath"; version="1.3.2"; sha256="17glrkz63ms76cmg7lfz0nay131ngwxigwfs0rzgfjna9gy06dgi"; depends=[dplyr ggplot2 ggtree Hmisc rms survival survivalROC survminer treeio]; broken = true; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; + SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; broken = true; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; broken = true; }; - TCIU = derive2 { name="TCIU"; version="1.2.0"; sha256="0cyagbvcb8x1bszwq8id75838n53l1kcdah7hhm679j2wm4i487s"; depends=[AnalyzeFMRI cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; broken = true; }; + TCIU = derive2 { name="TCIU"; version="1.2.1"; sha256="1jk62c5s1nqg3aah04f8i9s52d8hqw5s1ckxj52p5bgkx55q83kw"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; broken = true; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; broken = true; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; broken = true; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; broken = true; }; @@ -19475,10 +19625,14 @@ in with self; { TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; broken = true; }; TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; broken = true; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; broken = true; }; + ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-3"; sha256="06jhgl1fzvkvnhrjs4xcyw6yymwl499rw9xnfwpx44dzxi7nynxj"; depends=[MASS numDeriv]; broken = true; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; broken = true; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; broken = true; }; + TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; broken = true; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; broken = true; }; TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; broken = true; }; + ToxicR = derive2 { name="ToxicR"; version="22.8.1.0.3"; sha256="0sc7i3jzqhjwhcz83p7vgjmlpz4f27k0phbi2q5c8gxcnkzbffwp"; depends=[coda doBy dplyr forcats ggplot2 ggridges multcomp Rcpp RcppEigen RcppGSL scales shiny tidyverse]; broken = true; }; + TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.1"; sha256="03cr1cmiygi0kq37zs8dnp1rd670yzd4z1wgj31ahnld1siqb30g"; depends=[caret data_table DescriptiveStats_OBeu dplyr lubridate RCurl zoo]; broken = true; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; broken = true; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; broken = true; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; broken = true; }; @@ -19530,6 +19684,7 @@ in with self; { agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; broken = true; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; broken = true; }; alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; broken = true; }; + allhomes = derive2 { name="allhomes"; version="0.3.0"; sha256="1z39qd7hkl2xy0lhf8sgc4rjf4ihi3zbsadchc97h7p7cn9mjbpk"; depends=[dplyr htmltab httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; ambiorix = derive2 { name="ambiorix"; version="2.1.0"; sha256="1831i5fv966cghp5xgq71wqzldlajyjj2p4nkhbw007w2dcn0y21"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; broken = true; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; broken = true; }; @@ -19540,6 +19695,7 @@ in with self; { andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aof = derive2 { name="aof"; version="0.1.2"; sha256="0552i5wvm04dq8a8y1x36sprc9cbx6k7c3bmsgqxm71dpsxajb0i"; depends=[bcpa]; broken = true; }; + aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; broken = true; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; broken = true; }; apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; @@ -19560,6 +19716,7 @@ in with self; { automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; broken = true; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; broken = true; }; + bRacatus = derive2 { name="bRacatus"; version="1.0.9"; sha256="0rwa452izd453nllirdvngcrf1inpc7njfhdlpwjvgsx9k3ri908"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; broken = true; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; broken = true; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; broken = true; }; @@ -19596,7 +19753,6 @@ in with self; { bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; broken = true; }; blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; broken = true; }; blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; broken = true; }; - blindrecalc = derive2 { name="blindrecalc"; version="0.1.3"; sha256="1kaia4mpwjh9p0m9jc694i2gy1hfqa3k04w17cnmwsfppgwq11ls"; depends=[Rcpp]; broken = true; }; blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; broken = true; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; broken = true; }; blockcluster = derive2 { name="blockcluster"; version="4.5.1"; sha256="1f152m3fv0aaw2csgqvf1y231f5rjhwrkn69yyx9yb3ff65z49d8"; depends=[Rcpp rtkore]; broken = true; }; @@ -19605,6 +19761,7 @@ in with self; { bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; broken = true; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; broken = true; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; broken = true; }; + bmotif = derive2 { name="bmotif"; version="2.0.2"; sha256="1zy153z7kasfivj0mvrkyn96s0sgdp34w4pdjpcvfnym3lr02f0m"; depends=[gtools Rcpp reshape2 tensor]; broken = true; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; broken = true; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; boomer = derive2 { name="boomer"; version="0.1.1"; sha256="16gwdvcp8bz5bgmvxsvc9iyz2a6mpwf5vgilc1lhf9l4n0l1m685"; depends=[crayon pryr rlang rstudioapi styler withr]; broken = true; }; @@ -19619,6 +19776,7 @@ in with self; { broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; broken = true; }; bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; broken = true; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; broken = true; }; + cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; broken = true; }; cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; broken = true; }; @@ -19626,14 +19784,14 @@ in with self; { cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; broken = true; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; broken = true; }; cascadess = derive2 { name="cascadess"; version="0.1.0"; sha256="105m5w8rb8bkzmlc5nwb4g0wl8jgvz63jxq665x4jfq0z78qiwgd"; depends=[crayon htmltools magrittr rlang]; broken = true; }; - caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; broken = true; }; casen = derive2 { name="casen"; version="0.2.0"; sha256="05pn8raqlqdvqx61p2z4kv0ds0444dqzy9l3dacigiq88rz7s8nb"; depends=[dplyr glue haven labelled magrittr purrr rlang srvyr survey tidyr]; broken = true; }; cat_dt = derive2 { name="cat.dt"; version="0.3.1"; sha256="0qr3azaxs339kfiiyzasc46xz4rb37prdwvdmv0c40cvba6zvapf"; depends=[ggplot2 Matrix Rglpk]; broken = true; }; catSplit = derive2 { name="catSplit"; version="0.1.0"; sha256="0nifbwczfs5g9xxlmqfwvcaxd940k5xmbdmamwlhvgif7myi6xr4"; depends=[caret data_table dplyr farff OpenML rpart stringr]; broken = true; }; catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; broken = true; }; + catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; broken = true; }; + catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; broken = true; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; broken = true; }; causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; broken = true; }; - caviarpd = derive2 { name="caviarpd"; version="0.2.28"; sha256="08j739b0dmq6s8gjhzrjrhf5ni4fyygamjsyylrdq6cj6xkgb2m0"; depends=[]; broken = true; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; broken = true; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; broken = true; }; cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; broken = true; }; @@ -19643,18 +19801,24 @@ in with self; { cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; broken = true; }; cec2013 = derive2 { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; broken = true; }; cecs = derive2 { name="cecs"; version="0.2.4"; sha256="1fm1yrb8kd7f97kgsp5wfp02fspzvndki2aqsfcwb0rlrlckflzf"; depends=[cec2013 stringr]; broken = true; }; + ced = derive2 { name="ced"; version="1.0.1"; sha256="0xrf3y1cr4dylhh2xr1gggnwdwn7riz37g6yw55hyryg03hxkms6"; depends=[Rcpp]; broken = true; }; cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; broken = true; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; broken = true; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; broken = true; }; cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; broken = true; }; + cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; broken = true; }; changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; broken = true; }; changepoint_mv = derive2 { name="changepoint.mv"; version="1.0.2"; sha256="0bji0m4ks2lf9s1rnq58w97ywpgs3m9rpm5p5f70f0kn33yffrix"; depends=[assertive ggplot2 Rcpp Rdpack reshape2 tbart zoo]; broken = true; }; cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; broken = true; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; broken = true; }; chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; broken = true; }; + cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; broken = true; }; + chessR = derive2 { name="chessR"; version="1.5.2"; sha256="1czv5y4ybbi15b87959vri25fy31yv2l2cdd5q6p9fw291kj1qnp"; depends=[curl dplyr httr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; broken = true; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; broken = true; }; + chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; broken = true; }; childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; broken = true; }; chorrrds = derive2 { name="chorrrds"; version="0.1.9.5"; sha256="045m3hqfk63zlb44s07wflaawzn030fg0nqck4w852m52a0r1z5v"; depends=[dplyr forcats magrittr purrr rlang rvest stringr xml2]; broken = true; }; + chromatographR = derive2 { name="chromatographR"; version="0.4.4"; sha256="15m74ijyh7dw4g2yigw4nf0gwbx7qlqb05pd2kzxbjckyhd449nb"; depends=[chromConverter dynamicTreeCut fastcluster lattice minpack_lm ptw pvclust scales smoother]; broken = true; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; broken = true; }; circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; broken = true; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; broken = true; }; @@ -19665,11 +19829,12 @@ in with self; { cleanr = derive2 { name="cleanr"; version="1.3.5"; sha256="0hi1ykg7z0mai5hs4vqri45llwnjnc5gfxrzfcv6yv2s4c2hwq2w"; depends=[checkmate fritools pkgload rprojroot]; broken = true; }; clere = derive2 { name="clere"; version="1.2.0"; sha256="0qc26ycycxphrbksk7jb1m6vh66a2zsnw8k4jnazs23sqdg24im9"; depends=[Rcpp RcppEigen]; broken = true; }; climate = derive2 { name="climate"; version="1.0.5"; sha256="17hfxav8j0zyyl1839sj7nysv08j5z7xwz3p42di16cyx57czm4w"; depends=[curl data_table httr XML]; broken = true; }; + climetrics = derive2 { name="climetrics"; version="1.0-5"; sha256="0jy6npilv21hm0cwv5dmxwbz1x5lw75a14n9nbp743864z6jrz30"; depends=[raster rts sp terra xts yaImpute zoo]; broken = true; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; - clustAnalytics = derive2 { name="clustAnalytics"; version="0.5.0"; sha256="0c4cfxj5vb0l519b2llq9snzvqcilf48nlvm3zn2d7bpabwnfrs3"; depends=[boot dplyr fossil igraph kdtools mcclust mclust Rcpp Rdpack truncnorm]; broken = true; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; broken = true; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; broken = true; }; + coala = derive2 { name="coala"; version="0.7.0"; sha256="00rwjdl3nscrl7ldb9j5l12xhjg1fi8li5l9xyx9gw28ixkznl6a"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; broken = true; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; broken = true; }; coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; broken = true; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; broken = true; }; @@ -19680,11 +19845,13 @@ in with self; { compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; broken = true; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; + conText = derive2 { name="conText"; version="1.1.0"; sha256="04zqahx01rqpa6wm4krnr7vfafcxgqblrd911qw7pfwvmjl2w92s"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec tidyr]; broken = true; }; concurve = derive2 { name="concurve"; version="2.7.7"; sha256="185jwz7a33sc9gbkfbcxwzgzd39xn5x72d0nk6p045mq3xssk3j9"; depends=[bcaboot boot colorspace dplyr flextable ggplot2 knitr metafor officer pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; broken = true; }; + condSURV = derive2 { name="condSURV"; version="2.0.2"; sha256="1zw79rll44dx5vysfixfp684gf8c3c37xazwgrfzjbq54i3jwmir"; depends=[doParallel doRNG foreach KernSmooth np survival]; broken = true; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; broken = true; }; - container = derive2 { name="container"; version="1.0.2"; sha256="0hrykh0q5f9j6ryikgr7zagavd8v62gvaiyglhrqxz18wqs30b3b"; depends=[data_table R6]; broken = true; }; + contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; broken = true; }; convergEU = derive2 { name="convergEU"; version="0.5.1"; sha256="1s42ki2shn3nd902gxbbmjch64iaq3iy3c592nq54w5jq5xd43f7"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr purrr rlang rmarkdown stringr tibble tidyr]; broken = true; }; @@ -19702,6 +19869,7 @@ in with self; { cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; cptec = derive2 { name="cptec"; version="0.1.1"; sha256="12y79r56zlm3d9z7886qc625x8c206vg3hmjxpvh3j2fapy287qc"; depends=[magrittr rvest xml2]; broken = true; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; broken = true; }; + crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; broken = true; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; broken = true; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; broken = true; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; broken = true; }; @@ -19711,6 +19879,7 @@ in with self; { csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; broken = true; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; broken = true; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; broken = true; }; + cthist = derive2 { name="cthist"; version="1.2.1"; sha256="1v377i3d26m6arl04iqqvj2ghc0bhns8nrgvk677gkki34ndbcz5"; depends=[assertthat dplyr httr jsonlite magrittr polite RCurl readr rlang rvest selectr stringr tibble]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; broken = true; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; broken = true; }; @@ -19721,6 +19890,7 @@ in with self; { cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; broken = true; }; cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; broken = true; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; broken = true; }; + daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; dash = derive2 { name="dash"; version="0.9.4"; sha256="1ggdfzlf7ayv2nc6qpmyrg3cx31cikhnv7smwpx6xlmj2sc75war"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; broken = true; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; broken = true; }; @@ -19730,9 +19900,9 @@ in with self; { datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; broken = true; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; broken = true; }; + dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; broken = true; }; dccvalidator = derive2 { name="dccvalidator"; version="0.3.0"; sha256="1l74pqvac0n7dyfzkz2m0m6j19c8icymbwcifp2g5qvrpznfhxjb"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; broken = true; }; dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; broken = true; }; - dcortools = derive2 { name="dcortools"; version="0.1.2"; sha256="0p4qbah5jnb6jraka8bg6cks3namrz66bya2iz98q2adarqd517h"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; broken = true; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; broken = true; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; broken = true; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; broken = true; }; @@ -19754,6 +19924,7 @@ in with self; { diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; broken = true; }; disastr_api = derive2 { name="disastr.api"; version="1.0.5"; sha256="1h5i6pwak16w0gdk8qjz4w9qpffjhzlsrvjkb4acrvgjgrsvz9kp"; depends=[httr jsonlite]; broken = true; }; + discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; broken = true; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; broken = true; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; broken = true; }; diseasemapping = derive2 { name="diseasemapping"; version="1.5.1"; sha256="0pqilkl56753j1fxy6mh7nx24n6qg2j5faxyxj6abcm6xrnkhmy9"; depends=[rgeos sp]; broken = true; }; @@ -19761,7 +19932,6 @@ in with self; { dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; broken = true; }; distr6 = derive2 { name="distr6"; version="1.6.9"; sha256="1vl8xg0r0g169xdx6prnfpfr1jnn8mc4daayrzpws4my2dc59dqh"; depends=[checkmate data_table ooplah param6 R6 Rcpp set6]; broken = true; }; distribglm = derive2 { name="distribglm"; version="0.4.1"; sha256="09gpkp7s8y2dcpjhqgi2nl6j8pmd500y89d8c8x8sxmh5mg8n5si"; depends=[readr]; broken = true; }; - dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; broken = true; }; dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; broken = true; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; broken = true; }; dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; broken = true; }; @@ -19776,7 +19946,9 @@ in with self; { dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.4.1"; sha256="0ygn8cq4dnmzzxfskcir7g0bksgby5sw2j135gvrk599z3v6avg1"; depends=[bit64 DBI dbplyr dplyr odbc]; broken = true; }; drmdel = derive2 { name="drmdel"; version="1.3.2"; sha256="1772fxm3qs01h14qklp2rawcdm0vmjmb2mi62v1zl1hbxisnfq4s"; depends=[]; broken = true; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; broken = true; }; + dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; broken = true; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; broken = true; }; + dual_spls = derive2 { name="dual.spls"; version="0.1.2"; sha256="0cy3l715bf8l6yx5sdqmz9v5an3jr0zqhc99hzqv8iyzrdrd8hwd"; depends=[pdist]; broken = true; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; broken = true; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; broken = true; }; durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; broken = true; }; @@ -19786,6 +19958,7 @@ in with self; { ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; broken = true; }; ebmstate = derive2 { name="ebmstate"; version="0.1.3"; sha256="04pg9yqbjrq10ai13c8zm8sy7spnf96ldbbql7qysjl91ljgrqz6"; depends=[HDInterval mstate Rcpp survival]; broken = true; }; ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; broken = true; }; + ecb = derive2 { name="ecb"; version="0.4.0"; sha256="0hn1d1hxilwxxmxzzpdcj81d4vy8fbjk1z09kw7j0b2p04wrdlkc"; depends=[curl httr rsdmx xml2]; broken = true; }; ecce = derive2 { name="ecce"; version="1.0.9"; sha256="071ahimmwc1bgcwli4c40h7drdg5ldhh0w1ldzxkjc78qyw8s23d"; depends=[purrr RCurl rjson stringr]; broken = true; }; edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; broken = true; }; @@ -19802,7 +19975,6 @@ in with self; { eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; broken = true; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; broken = true; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; broken = true; }; - elections_dtree = derive2 { name="elections.dtree"; version="1.0.0"; sha256="02maspca7cw606fqly92gpxjzl6pzjmicmqin06g8xbfk1l6ryjn"; depends=[R6 Rcpp RcppThread Rdpack testthat]; broken = true; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; broken = true; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; broken = true; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; broken = true; }; @@ -19822,6 +19994,8 @@ in with self; { erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; broken = true; }; ergm_multi = derive2 { name="ergm.multi"; version="0.1.1"; sha256="17zlry93pwjc5pqdg1840i67j3vzm2j3bvss4chpmz66v9jk3faj"; depends=[ergm glue Matrix network purrr Rdpack rlang rle statnet_common tibble]; broken = true; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.10.0"; sha256="1aqrgdayh73dkr71gf8vawlj6qgv66pxr4klxgqb6ffan66b5p8g"; depends=[ergm network statnet_common]; broken = true; }; + ergmclust = derive2 { name="ergmclust"; version="1.0.0"; sha256="18vx02vr2wi0gw09g4hxb8glf38y06v4a0c6q666qv8bgcb0pgkw"; depends=[igraph lda MASS quadprog Rcpp RcppArmadillo viridis]; broken = true; }; + ergmito = derive2 { name="ergmito"; version="0.3-0"; sha256="0ajfx8g31p0lf0ajrgssb9lkhs1bxkz19z3q99l500znlivc2fy2"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; broken = true; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; broken = true; }; erratum = derive2 { name="erratum"; version="2.2.0"; sha256="0id03wm8knll548ydwv3cpn282xvw05vyaih8jy6nlmlis18wybf"; depends=[R6 rlang]; broken = true; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; broken = true; }; @@ -19830,12 +20004,14 @@ in with self; { evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; broken = true; }; eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; broken = true; }; + evolqg = derive2 { name="evolqg"; version="0.2-9"; sha256="1y1pq2hdilqkj6hk02km9aaaynz1calcw00r5k1rxlc4wfq1wx70"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; broken = true; }; evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; broken = true; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; broken = true; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; broken = true; }; excerptr = derive2 { name="excerptr"; version="2.0.1"; sha256="0lmcxlpxvldxwqxrprqq39hk5f770ii1x38jm2jbs4n75smp4m21"; depends=[checkmate reticulate]; broken = true; }; exdqlm = derive2 { name="exdqlm"; version="0.1.2"; sha256="0wkiihdvgf7lyzv02l10spxcn127w1jblz6fbr7yf16mfq0m9mlk"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; broken = true; }; exoplanets = derive2 { name="exoplanets"; version="0.2.2"; sha256="0jzqzw0sn2cixxl6wdikz6cmm2qijxcjp81c98dfqamjcnbpqc1f"; depends=[cli httr memoise readr tibble]; broken = true; }; + exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; broken = true; }; expose = derive2 { name="expose"; version="0.0.3"; sha256="0dlxlxm3g9d8vmgp13i1825z1jzah94ih1vyif46s43xq0nf9anj"; depends=[e1071 foreach gam ggplot2 glmnet Matrix nnet polspline RColorBrewer Rcpp repmis SuperLearner xgboost]; broken = true; }; @@ -19854,6 +20030,7 @@ in with self; { fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; broken = true; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; broken = true; }; fOptions = derive2 { name="fOptions"; version="3042.86"; sha256="1cqyggb1hb7z0gfgkziynz7nm85z0fn3bvz1iwpy49yy8ll7rfzr"; depends=[fBasics timeDate timeSeries]; broken = true; }; + fabisearch = derive2 { name="fabisearch"; version="0.0.4.4"; sha256="02xpndws34wh6kfk677kmpnhhxyxnwpg6asdfdn3wr44rcr7zk2v"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; broken = true; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; broken = true; }; factorEx = derive2 { name="factorEx"; version="1.0.1"; sha256="03dgxxykxgq63cgan5gy5vz4hnwqmg48z2wdv8f69mk9452mg9m2"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; broken = true; }; factorMerger = derive2 { name="factorMerger"; version="0.4.0"; sha256="127k5h1gbbnjr6gxgck2n9glvvwkd69xq7n6gzmrq8gszk8v1x5m"; depends=[agricolae colorRamps dplyr forcats formula_tools ggplot2 ggpubr knitr magrittr MASS mvtnorm proxy reshape2 scales survival]; broken = true; }; @@ -19866,12 +20043,14 @@ in with self; { fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; broken = true; }; fasi = derive2 { name="fasi"; version="1.0.0"; sha256="1hfd6nl8zvn7sybji8s1pa2wl95l2vqa07rv96yn9rk07qvdc6dy"; depends=[fastAdaboost gam naivebayes]; broken = true; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; broken = true; }; + fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; broken = true; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; broken = true; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; broken = true; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; broken = true; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; broken = true; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; broken = true; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; broken = true; }; + fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; broken = true; }; fec16 = derive2 { name="fec16"; version="0.1.3"; sha256="0azvrg98li535mqa2awhmfisfyfr4d8dw0ynikxmp0z1w9l3dx1p"; depends=[dplyr readr vroom]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fellov = derive2 { name="fellov"; version="0.1"; sha256="0z4b08ykajzwa5852dknqz5qqlmhklbwdq8x5zhyfmwba5zfbjav"; depends=[]; broken = true; }; @@ -19893,6 +20072,7 @@ in with self; { flow = derive2 { name="flow"; version="0.1.0"; sha256="1d5cj0qbmx6cwzik83vb0vijryq4b93y5wwgm8k92wg3lgknzdj6"; depends=[here htmlwidgets lifecycle nomnoml rstudioapi styler webshot]; broken = true; }; flower = derive2 { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; broken = true; }; flowfield = derive2 { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; broken = true; }; + foieGras = derive2 { name="foieGras"; version="0.7-6"; sha256="0g4c9id7q3jgjcgwmncp4bkw9njwb41cp6ycv7psiidkhmnzi03d"; depends=[assertthat CircStats dplyr furrr future ggplot2 lifecycle lubridate mvtnorm patchwork purrr RcppEigen sf stringr tibble tidyr TMB tmvtnorm trip]; broken = true; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; broken = true; }; fontMPlus = derive2 { name="fontMPlus"; version="0.1.1"; sha256="1hvviawbfs3m7mr46y2sjdxkksi10vpbnjic11rjaxqcy9a43f4y"; depends=[extrafont ggplot2 hrbrthemes]; broken = true; }; foodweb = derive2 { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; broken = true; }; @@ -19914,6 +20094,9 @@ in with self; { fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; + fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.12"; sha256="08rcyqh0nwpjjybks05klpb3ghry5n2652y5vxz7f5wdvlzjkhwz"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen summclust]; broken = true; }; + g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; broken = true; }; + gMWT = derive2 { name="gMWT"; version="1.2"; sha256="0gy8mm6ajbd2nl059nrb24wkh06qbbbg2h8m6fl58n5wgsjns1va"; depends=[clinfun Rcpp RcppArmadillo]; broken = true; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; broken = true; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; @@ -19931,9 +20114,12 @@ in with self; { geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; broken = true; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; broken = true; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; broken = true; }; + genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; broken = true; }; genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; broken = true; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; broken = true; }; geomedb = derive2 { name="geomedb"; version="2.0.1"; sha256="1l35c9x1mhqd7z5ragd7w3ay8v2fdnbmbfx9grwi622j8yz1fbmq"; depends=[ape httr jsonlite]; broken = true; }; + geometr = derive2 { name="geometr"; version="0.2.10"; sha256="00yhw6k9wj3q0mmhwrjvhybsz5fcx86ms5n1q2l492jljplp46cr"; depends=[checkmate crayon deldir dplyr purrr raster Rcpp rgdal rlang sf sp tibble]; broken = true; }; + geonet = derive2 { name="geonet"; version="0.7.3"; sha256="0kp0a1bd8yyvp8w044arawyfmxwmqln3dqk0jzvz1vhbhldgy27s"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; broken = true; }; geostatsp = derive2 { name="geostatsp"; version="1.8.6"; sha256="1ciyw84y5zbwsfqvl5dhq8swfpkqcmzhhvdm9hr5rhj3497sls9j"; depends=[abind Matrix numDeriv raster sp]; broken = true; }; geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; broken = true; }; @@ -19941,15 +20127,16 @@ in with self; { gerbil = derive2 { name="gerbil"; version="0.1.5"; sha256="1rvf7z7zj04p2faj41fxxjs20bd3ghr6fbzkkapcx48fr4j9skj2"; depends=[DescTools lattice MASS mvtnorm openxlsx pbapply truncnorm]; broken = true; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; broken = true; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; broken = true; }; + getpublist = derive2 { name="getpublist"; version="0.1.0"; sha256="0p6l7qha6i7vhqvav74yxpa6qph35g41v00173mjjqsvyhd0qc5i"; depends=[dplyr magrittr rvest stringr tibble tidyr xml2]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; - ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; broken = true; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; broken = true; }; - ggalignment = derive2 { name="ggalignment"; version="1.0.0"; sha256="07f1l7pav36i2z75bvwcwkamw5i36fh5klh5djglxnq1a3v8jm79"; depends=[dplyr ggimage ggplot2 magrittr rlang]; broken = true; }; ggbraid = derive2 { name="ggbraid"; version="0.2.2"; sha256="1y5yskhc63cprvdk1j7nhz8mz9i36qs8sqlr9h09yi172mp6ignn"; depends=[ggplot2]; broken = true; }; + ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; broken = true; }; ggfacto = derive2 { name="ggfacto"; version="0.2.2"; sha256="0rxqkhmnzpljcdbg5wzmyq5fivd3d2h1903w8d1cblq7xw969xi0"; depends=[dplyr FactoMineR forcats ggiraph ggplot2 ggrepel gridExtra htmlwidgets kableExtra magrittr purrr rlang stringi stringr tabxplor tibble tidyr tidyselect vctrs widgetframe]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; broken = true; }; + ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; broken = true; }; ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; broken = true; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; @@ -19958,6 +20145,7 @@ in with self; { globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; broken = true; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; broken = true; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; broken = true; }; + gompertztrunc = derive2 { name="gompertztrunc"; version="0.1.0"; sha256="1qcx4s4lz2gsjr0nmwaih7pdh2anibrri7zfpsrl65lndkwy6hg4"; depends=[broom cowplot data_table dplyr flexsurv ggplot2 ggsci magrittr modelr rlang stringr tibble tidyr]; broken = true; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; broken = true; }; gps = derive2 { name="gps"; version="1.0"; sha256="1yzmv0zpgnis3v2f7m9j02zxw31kgcw9fny3vrvk4637jzz2ij56"; depends=[Matrix]; broken = true; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; broken = true; }; @@ -19972,7 +20160,6 @@ in with self; { gsrsb = derive2 { name="gsrsb"; version="1.1.1"; sha256="0yjxzc69ihsx5ni6jb4shsvl9vskqlls3gmpckmzx5nsh1l5s5vb"; depends=[ldbounds mvtnorm xtable]; broken = true; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; broken = true; }; guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; broken = true; }; - guiplot = derive2 { name="guiplot"; version="0.2.1"; sha256="0jn5020f6s3zg7w79d5sjaqld2i6b882q2r0ybdsyny47jd8h7rn"; depends=[DT excelR ggplot2 magrittr R6 rlang shiny svglite]; broken = true; }; gutenbergr = derive2 { name="gutenbergr"; version="0.2.1"; sha256="0rsk583x4i1ac6rbxr5f5cmczr4525bkv20jw7777n8fwn91zvyr"; depends=[dplyr lazyeval purrr readr stringr urltools]; broken = true; }; gvcm_cat = derive2 { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; broken = true; }; gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; broken = true; }; @@ -19986,17 +20173,21 @@ in with self; { hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; broken = true; }; hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; broken = true; }; + healthcareai = derive2 { name="healthcareai"; version="2.5.1"; sha256="0ah855wvb2v8b8zz5a64q8psjrkpgq9xzyrla3mdpm5xx2gh0z0p"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; broken = true; }; hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; broken = true; }; + hht = derive2 { name="hht"; version="2.1.5"; sha256="06znfxl5qh3wz1bn5qzl45nqgy94y6h0rcl2wzg94czv5d1a9ym0"; depends=[EMD fields spatstat_core spatstat_geom]; broken = true; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; broken = true; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; broken = true; }; hierbase = derive2 { name="hierbase"; version="0.1.2"; sha256="1rsyjlwa8x5n83ymwv7qm373k3y7jfp64g717xd1jmn9vrmm052b"; depends=[glmnet hdi SIHR]; broken = true; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; broken = true; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; broken = true; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; broken = true; }; + hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; broken = true; }; hmgm = derive2 { name="hmgm"; version="1.0.3"; sha256="12gaz2pi9ny7y772yzrfvl02p3n89cq1l5dzmcksd172gv9ayyz1"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; broken = true; }; hmi = derive2 { name="hmi"; version="1.0.0"; sha256="0fjcw13mkxza6nkq3fhp188ga1sjspq1sc6wjm4hy13xh7vdjpqq"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; broken = true; }; + hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; broken = true; }; hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="1.3.0"; sha256="0nb42c1fbmpmpmc9yjcdrypl5jvlqc2ibrzlvz7n51zwvx4v5gc0"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr padr purrr rvest stringr tidyr tidyselect xgboost zoo]; broken = true; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; broken = true; }; @@ -20005,6 +20196,7 @@ in with self; { hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; broken = true; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; broken = true; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; broken = true; }; + htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; broken = true; }; htmltidy = derive2 { name="htmltidy"; version="0.5.0"; sha256="1djkjff3750fm1sp54kf9cjvsqz2x7ia1ns12h5vqqcvwzfd0701"; depends=[htmltools htmlwidgets Rcpp XML xml2]; broken = true; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; broken = true; }; hydroscoper = derive2 { name="hydroscoper"; version="1.4.1"; sha256="0jhvjmhcprjdjg6a54ic2f4kxfanpgwzzrkyyiggmj5jjg9yfhfw"; depends=[jsonlite pingr readr stringi stringr tibble]; broken = true; }; @@ -20018,10 +20210,12 @@ in with self; { iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; broken = true; }; ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; broken = true; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; broken = true; }; + icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; broken = true; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; broken = true; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; broken = true; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; broken = true; }; + iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; broken = true; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; broken = true; }; imfr = derive2 { name="imfr"; version="0.1.9.1"; sha256="1l1lvzvz9hsqwk60k2w8ry8mvgzj7wrd6ycfhgwv39xid9vk70g7"; depends=[dplyr httr jsonlite]; broken = true; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; broken = true; }; @@ -20033,10 +20227,12 @@ in with self; { infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; broken = true; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; broken = true; }; inldata = derive2 { name="inldata"; version="1.0.3"; sha256="0iz3dlmaw6p81lj406nq4sg4qvl289mn95by10r3zrikf39l0jq2"; depends=[raster sp]; broken = true; }; + inlmisc = derive2 { name="inlmisc"; version="0.5.5"; sha256="0d7yqbd7bqsk312g28pqgdpcpqd06abyra2inmnj8fkgpmv3wjf6"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex webshot wordcloud2 xtable yaml]; broken = true; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; broken = true; }; intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; broken = true; }; interacCircos = derive2 { name="interacCircos"; version="1.0.0"; sha256="1waj0saavvaw2qzhbwcj1k0a2dnmq7zbkdnmb93xj6j1lhfjhbdy"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; broken = true; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; broken = true; }; + interpret = derive2 { name="interpret"; version="0.1.26"; sha256="0f7bhz5gj0f5dxjcc9xlrx4y474akn6q0d7z71yypyw6bawvqkbn"; depends=[]; broken = true; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; broken = true; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; broken = true; }; intsurvbin = derive2 { name="intsurvbin"; version="0.0.4"; sha256="119zjn1agl2j4fj4yg1pq1sqskzw93xfzppmc5n1x8llmfbxkqsj"; depends=[mgcv MHadaptive msm mvtnorm tmvtnorm]; broken = true; }; @@ -20049,16 +20245,16 @@ in with self; { irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; broken = true; }; irtplay = derive2 { name="irtplay"; version="1.6.4"; sha256="128xw3ylcirfls4fif8ilnphfhpz9pn7pmg4sl1qrwqdh0xksgk2"; depends=[dplyr ggplot2 gridExtra janitor Matrix purrr reshape2 rlang statmod tidyr]; broken = true; }; isaeditor = derive2 { name="isaeditor"; version="0.1.1"; sha256="10gm3mrpi52sj5mkmdgggx8a5yh6a506hawg7yg2518ym8552hsp"; depends=[colorDF crayon dplyr glue magrittr readr rlang tibble tidyr]; broken = true; }; - isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; broken = true; }; isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; broken = true; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; broken = true; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; broken = true; }; ivpack = derive2 { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; broken = true; }; ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; broken = true; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; broken = true; }; - jackstraw = derive2 { name="jackstraw"; version="1.3.1"; sha256="0l90ayysbmj6gzpzcglpwkpaga067imy6s7hqapmkwiy9kx8gaa1"; depends=[cluster ClusterR corpcor irlba lfa qvalue rsvd]; broken = true; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; + jgsbook = derive2 { name="jgsbook"; version="1.0.1"; sha256="0fkxbka4fcsa3bb0zh2fh58q44izsl1q0swa7ink2agl6yxxpmk3"; depends=[jsonlite statip]; broken = true; }; + jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; @@ -20086,8 +20282,9 @@ in with self; { lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; broken = true; }; leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; broken = true; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; broken = true; }; - lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; broken = true; }; + legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; + libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; broken = true; }; @@ -20102,7 +20299,6 @@ in with self; { lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; broken = true; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; broken = true; }; lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; broken = true; }; - lmomPi = derive2 { name="lmomPi"; version="0.5.0"; sha256="07ggfzgvhc6kkqs8bbs6z01rbhgb0ki2y4li6r0nkiby1wcpx0py"; depends=[lmom stringr]; broken = true; }; logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; broken = true; }; longclust = derive2 { name="longclust"; version="1.2.3"; sha256="1g45d5pak2vhbjrcmxxrk9jyrdxkqwy45phzpsw6b2bjyrgr4i7g"; depends=[]; broken = true; }; longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.1"; sha256="03nqglxyz6qfalxdnyh2aarxv3agn0b3r4nhsji4v9703h4m1fvg"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; broken = true; }; @@ -20114,6 +20310,7 @@ in with self; { lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; broken = true; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; broken = true; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; broken = true; }; + lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; broken = true; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; broken = true; }; mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; broken = true; }; mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; broken = true; }; @@ -20122,7 +20319,7 @@ in with self; { machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; broken = true; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; broken = true; }; - mapfit = derive2 { name="mapfit"; version="0.9.9"; sha256="027wi8ffbk4ks8h2i29i9gspxc74a8dr39bbk09sa5v4x22j62sz"; depends=[deformula Matrix]; broken = true; }; + maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; broken = true; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; broken = true; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; broken = true; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; broken = true; }; @@ -20130,11 +20327,12 @@ in with self; { maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; broken = true; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; broken = true; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; broken = true; }; + mcbette = derive2 { name="mcbette"; version="1.15"; sha256="0wilbz4zwjnzxfa3nail10a8y1cjq1myb2lqyj01k8s5kpwb0isq"; depends=[babette beastier beautier curl devtools mauricer Rmpfr testit txtplot]; broken = true; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; broken = true; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; broken = true; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; broken = true; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; broken = true; }; - mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; + mclustAddons = derive2 { name="mclustAddons"; version="0.7"; sha256="122cl8f1x5s4bkbdajxh5j44i30fl0zasfi95szhzb1ddv7blm3l"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; broken = true; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; mdsr = derive2 { name="mdsr"; version="0.2.6"; sha256="1j5sh26b11x77bhl004pid3m3p756ylsmps7zzkvb54q5i5gdv9r"; depends=[babynames DBI dbplyr downloader dplyr fs ggplot2 htmlwidgets kableExtra RMariaDB skimr stringr tibble webshot]; broken = true; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; @@ -20142,15 +20340,19 @@ in with self; { medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; broken = true; }; met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; broken = true; }; metScanR = derive2 { name="metScanR"; version="1.2.3"; sha256="1v7zrxj3wspx6f5n5s75skcygbf3r85rn4p0z9iwbrbrgxwi4qgs"; depends=[geosphere leaflet matlab plyr RCurl]; broken = true; }; + metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; broken = true; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; broken = true; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; broken = true; }; mfbvar = derive2 { name="mfbvar"; version="0.5.6"; sha256="1wv46h6cr0xnvr8dxymx362skf7nf77yw84y6g48rj9mbq8kkkcj"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; broken = true; }; + mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; broken = true; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; broken = true; }; miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; + microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; minimist = derive2 { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; broken = true; }; + minval = derive2 { name="minval"; version="0.8-2"; sha256="06anbb90c8wg0374ykmb6chcwrcdyi903jkbrmrv3kgx511l699z"; depends=[]; broken = true; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; broken = true; }; mipred = derive2 { name="mipred"; version="0.0.1"; sha256="0kijn2xj0dh28rm2sjgd8j1a3c5avc3fjfvvcmzfasvxqdjflv6j"; depends=[mice]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; @@ -20166,16 +20368,16 @@ in with self; { mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; broken = true; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; broken = true; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; broken = true; }; + mlim = derive2 { name="mlim"; version="0.2.0"; sha256="04ssk3syx3cb5rcmycqfdssxcnp5nlnmnc58mr9bis129shhmvdg"; depends=[curl h2o md_log memuse mice missRanger]; broken = true; }; + mlmts = derive2 { name="mlmts"; version="1.0.1"; sha256="1j6yq4aj2kpqli6xk09ki1vrx91r2n5jasqhx361qp5rn8cn66h7"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; broken = true; }; mlr3proba = derive2 { name="mlr3proba"; version="0.4.9"; sha256="1qhxwx881b482wp85chw0s9390kwyhq32bjr4rlpscb53ppqx6v5"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival survivalmodels]; broken = true; }; - mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.0.2"; sha256="0j77hq1197bans2i5rlyzx1fhyl8m2cpgiq2fh5vcvkq0rkaq2mp"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; broken = true; }; mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; broken = true; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; broken = true; }; - mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; mobsim = derive2 { name="mobsim"; version="0.2.0"; sha256="0an8j5kj0cs1bjz9kwzwc54hm0zaiz5rsaw78ihldw0mx5n175gn"; depends=[Rcpp sads vegan]; broken = true; }; moc = derive2 { name="moc"; version="2.0"; sha256="0fgp8dg9qf7aw1qawmszlxs4bcccqmd87y4kkzdqggm807c2k5gh"; depends=[]; broken = true; }; - mockthat = derive2 { name="mockthat"; version="0.2.6"; sha256="12srlafk3ykzhrw65s1qzw3l566j285hi28rzrcpbgyr12720raa"; depends=[]; broken = true; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; broken = true; }; + modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; broken = true; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; broken = true; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; broken = true; }; moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; broken = true; }; @@ -20192,13 +20394,14 @@ in with self; { mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; broken = true; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; broken = true; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; broken = true; }; + mritc = derive2 { name="mritc"; version="0.5-2"; sha256="07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2"; depends=[lattice misc3d oro_nifti]; broken = true; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; broken = true; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; broken = true; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; mtconnectR = derive2 { name="mtconnectR"; version="1.2.1"; sha256="0hl46h535mjqwgrhmxlixhfsych3blzcynffp55nr1ynrra4dn06"; depends=[data_table dplyr dtw ggplot2 lubridate magrittr plyr proxy stringr tidyr XML]; broken = true; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; broken = true; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; broken = true; }; - mudfold = derive2 { name="mudfold"; version="1.1.2"; sha256="1g66axwrrvlsb03yhwa16pvxbl2wvpm7fzzl6nlw0cxlh99w7r33"; depends=[boot broom dplyr ggplot2 glmnet mgcv reshape2 zoo]; broken = true; }; + mudens = derive2 { name="mudens"; version="1.3.2"; sha256="18kv8xfmmmk0dyw64lwrlrks0gana0s7gaff6nxs59ndgb1pj6yp"; depends=[Rcpp survival]; broken = true; }; multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; broken = true; }; multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; broken = true; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; broken = true; }; @@ -20222,11 +20425,12 @@ in with self; { mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; broken = true; }; + nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; broken = true; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; broken = true; }; ndvtest = derive2 { name="ndvtest"; version="1.0-0"; sha256="15jqh58n63g2vr919z10d5ryhvk7325bv4gmd2xgdpi76p2dbyg0"; depends=[CompQuadForm nonnest2 Rdpack sandwich]; broken = true; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; + needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; broken = true; }; neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; broken = true; }; - netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.4"; sha256="1fm6pg3cavyhsjracwgb386dxj83dcfmx8apdhr5mbavd2h7pw42"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; broken = true; }; networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; broken = true; }; networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; broken = true; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; broken = true; }; @@ -20253,8 +20457,9 @@ in with self; { nowcasting = derive2 { name="nowcasting"; version="1.1.4"; sha256="1nj34cbkv1xlhmcfhxs32shv00mz02rp95xj59qkq5by53sx8qwq"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL vars xts zoo]; broken = true; }; npbr = derive2 { name="npbr"; version="1.7"; sha256="02jqf2xahz757gb4hpizwpgsvvz2d23s3pl02958925pdvkv6bp5"; depends=[Benchmarking np quadprog Rglpk]; broken = true; }; npm = derive2 { name="npm"; version="1.0.0"; sha256="01v913ylsh895yxkkpyviplcxcc3c90znccvjp7wbflmxxnvrasd"; depends=[assertthat cli crayon erratum]; broken = true; }; + nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; broken = true; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; broken = true; }; - nse = derive2 { name="nse"; version="1.20"; sha256="037z164m78hdbwgnaa10jq50ngg3n9iigmyd1r5gz6hgvsr5sbnf"; depends=[coda mcmc mcmcse np Rcpp sandwich]; broken = true; }; + nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; broken = true; }; nser = derive2 { name="nser"; version="1.4.3"; sha256="0q6gz79pwwsyz6rrjrhwr87mbzq2qv7bbc1dj7q4gfdviggkgar8"; depends=[curl dplyr googleVis httr jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; broken = true; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; @@ -20266,7 +20471,6 @@ in with self; { omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; broken = true; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; broken = true; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; broken = true; }; - onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; broken = true; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; broken = true; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; broken = true; }; optCluster = derive2 { name="optCluster"; version="1.3.2"; sha256="11k6mbkwmvhmcvnc4hgl8aa3j7n7im5g3040dgppahzdndysgnw3"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; broken = true; }; @@ -20278,6 +20482,7 @@ in with self; { osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; broken = true; }; osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; broken = true; }; osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; broken = true; }; + osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; broken = true; }; ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; broken = true; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; broken = true; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; broken = true; }; @@ -20295,10 +20500,12 @@ in with self; { pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; + palaeoSig = derive2 { name="palaeoSig"; version="2.0-3"; sha256="1sn2nbiq037l81qvrqbg7gf1312g8vy574hsfng07qk1jpx7vwkk"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; broken = true; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; broken = true; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; broken = true; }; param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; broken = true; }; + paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; broken = true; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; broken = true; }; parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; broken = true; }; parfm = derive2 { name="parfm"; version="2.7.6"; sha256="1n548gaf62m56n8rlcz1mhpqxikd33vydjwl4wps441drp1dbvs0"; depends=[msm optimx sn survival]; broken = true; }; @@ -20308,6 +20515,7 @@ in with self; { partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; broken = true; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; broken = true; }; pastis = derive2 { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; broken = true; }; + patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; broken = true; }; pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; broken = true; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; broken = true; }; pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; broken = true; }; @@ -20316,6 +20524,7 @@ in with self; { pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; broken = true; }; pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; broken = true; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; broken = true; }; + pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; broken = true; }; penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; broken = true; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; @@ -20327,6 +20536,8 @@ in with self; { physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; broken = true; }; pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; broken = true; }; + pirouette = derive2 { name="pirouette"; version="1.6.5"; sha256="0fw6hbpywmk1mqfxn480sh403afrmm8shlzcbwx32pjri9ajrx1q"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; broken = true; }; + pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; broken = true; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; broken = true; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; broken = true; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; broken = true; }; @@ -20348,7 +20559,6 @@ in with self; { portes = derive2 { name="portes"; version="5.0"; sha256="1iarvgz23979lipqyyvh8h0nd978p1nzbbjf020q11yqpl863502"; depends=[forecast]; broken = true; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; broken = true; }; powerHaDeX = derive2 { name="powerHaDeX"; version="1.0"; sha256="188a09jnn8xr5jx1n785gghpn3k8cqkhp76m47gixh5n9v15lzzg"; depends=[checkmate data_table expm ggplot2 glmnet lme4 lmerTest nlme plyr Rcpp signal]; broken = true; }; - powerjoin = derive2 { name="powerjoin"; version="0.0.1"; sha256="0hnk573jrpmr5k0yhfq74wksrz6ri5g21zf5853fslcxyjys1v8q"; depends=[cli dplyr generics glue lifecycle magrittr purrr rlang tibble tidyr tidyselect vctrs]; broken = true; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; broken = true; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; broken = true; }; @@ -20362,6 +20572,7 @@ in with self; { prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; broken = true; }; prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; broken = true; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; broken = true; }; + propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; broken = true; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; broken = true; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; broken = true; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; broken = true; }; @@ -20370,6 +20581,7 @@ in with self; { psymonitor = derive2 { name="psymonitor"; version="0.0.2"; sha256="09288w2bk5jhnbyj516jqn5qb33yqqg5kqbg6ylqk7anlq2yg2sl"; depends=[doParallel foreach magrittr]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; broken = true; }; + pulsar = derive2 { name="pulsar"; version="0.3.8"; sha256="0lrhz22s4622pcf9qz040sacg2myg6l3qym695v8f0a0zvabnix8"; depends=[Matrix]; broken = true; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; broken = true; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; broken = true; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; broken = true; }; @@ -20394,10 +20606,13 @@ in with self; { rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; broken = true; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; broken = true; }; rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; broken = true; }; + rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; broken = true; }; rRofex = derive2 { name="rRofex"; version="2.0.6"; sha256="0yg3bxadgmn5d7bljzn9bjzy833lfi6bwz24z52f8qcbm1nqchgb"; depends=[dplyr glue httr jsonlite later lifecycle magrittr purrr rlang tibble tidyr websocket]; broken = true; }; + rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; broken = true; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; broken = true; }; + rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; broken = true; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; broken = true; }; @@ -20405,9 +20620,9 @@ in with self; { randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; randnet = derive2 { name="randnet"; version="0.5"; sha256="131bkfzxjd3x02dj6wc2ilwpgymmm18apd4v1dd70ib4sibvir16"; depends=[AUC entropy irlba Matrix nnls poweRlaw pracma RSpectra]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; + ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; broken = true; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; broken = true; }; rasciidoc = derive2 { name="rasciidoc"; version="4.0.2"; sha256="1k3bh1bbjrzhmz2dz98qw8ad46jk7dx7srigp22valk5jz4ni7s5"; depends=[checkmate document fritools gert highr knitr reticulate]; broken = true; }; - rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; broken = true; }; rasterly = derive2 { name="rasterly"; version="0.2.0"; sha256="1fv0ayh8r78qss7ikcwnj0i5x8iyz4c3icsfb554zji9bw30x7qr"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; broken = true; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; @@ -20425,12 +20640,14 @@ in with self; { readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; broken = true; }; regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; broken = true; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; broken = true; }; + regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; broken = true; }; relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; broken = true; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; broken = true; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; broken = true; }; reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; broken = true; }; repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.3"; sha256="02bb4vrn0zdc3hm7ba148p18fs5g5bsfjjwnzpp54ymghfw1mq5m"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; broken = true; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; broken = true; }; + reproducible = derive2 { name="reproducible"; version="1.2.10"; sha256="0agphafd2khv2xk0fwqr2y3imn8fzwa3crpqbp4n3i9qkpmkmvpw"; depends=[data_table DBI digest fpCompare glue lobstr magrittr raster Require rlang RSQLite sp]; broken = true; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; broken = true; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; broken = true; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; broken = true; }; @@ -20441,6 +20658,7 @@ in with self; { rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; broken = true; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; + riot = derive2 { name="riot"; version="1.0.0"; sha256="1iv83z21k2a8kclfma1cq4jns4zdpgjrzajcsfl105srvv55n0s2"; depends=[cli fs Rcpp readr rlang tibble]; broken = true; }; rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; broken = true; }; rjpdmp = derive2 { name="rjpdmp"; version="2.0.0"; sha256="0r0r58zrwab4zxhgbfhh4qk6vbbza00m8h73mz70f5kqp786i9wy"; depends=[data_table Rcpp RcppArmadillo]; broken = true; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; broken = true; }; @@ -20449,10 +20667,11 @@ in with self; { rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; broken = true; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; broken = true; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; broken = true; }; + roads = derive2 { name="roads"; version="1.0.0"; sha256="02gkxvlngf23xv3sh578ynd5jzhlsslnllbvppyasbf4izisng16"; depends=[data_table dplyr igraph raster rlang sf sp SpaDES_tools stars tidyselect units]; broken = true; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; broken = true; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; broken = true; }; + rock = derive2 { name="rock"; version="0.5.5"; sha256="1c6g563fmm1anwhfnfiirlinrdzkb6z1c1zn4hr4c331wkyvihcm"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; broken = true; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; broken = true; }; - rosetta = derive2 { name="rosetta"; version="0.3.9"; sha256="104k6j7v41czd4g1qwifmig3zsjs3l4q5mvfab81przdb1m6k5kd"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rmdpartials ufs viridis]; broken = true; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; broken = true; }; rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; broken = true; }; rpatrec = derive2 { name="rpatrec"; version="1.0.1"; sha256="0zj461frf6n5s97zq7r52q0blsn2xq2759impgz6v4pr87gmq0si"; depends=[np]; broken = true; }; @@ -20478,6 +20697,7 @@ in with self; { sampSurf = derive2 { name="sampSurf"; version="0.7-6"; sha256="1f2ndfrxz0v0di9sb17rxs3iik2qw2nj1dn7apl55b2d07nsmpk3"; depends=[boot lattice latticeExtra raster rasterVis sp]; broken = true; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; broken = true; }; + scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; broken = true; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; broken = true; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; broken = true; }; scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; broken = true; }; @@ -20502,7 +20722,7 @@ in with self; { set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; broken = true; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; broken = true; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; broken = true; }; - shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; broken = true; }; + sfdep = derive2 { name="sfdep"; version="0.2.0"; sha256="04arbp8n1vpl5kksc0893vv8qh81m2mhb8fwk55r6y7zb6wpphwk"; depends=[cli rlang sf spdep]; broken = true; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; broken = true; }; shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; @@ -20523,6 +20743,7 @@ in with self; { smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; broken = true; }; snappier = derive2 { name="snappier"; version="0.2.0"; sha256="0pnrmgv42kmw84ajh24as9fqyczcwsnbi8dyq20q4ndynlkrj5rb"; depends=[]; broken = true; }; snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; broken = true; }; + snpEnrichment = derive2 { name="snpEnrichment"; version="1.7.0"; sha256="1lja1n26nr8lgbca2kraryv933jwa2w3h41appzylflf0w3liz9y"; depends=[ggplot2 snpStats]; broken = true; }; snpStatsWriter = derive2 { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; broken = true; }; snpar = derive2 { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; broken = true; }; sobir = derive2 { name="sobir"; version="0.1.2"; sha256="0di9mk1c1jf8yr7jpmfm19w2w3p9lz1mkgrv3bmfyab83aghvbfp"; depends=[DescTools devtools dplyr ggplot2 raster rlang scales sp statmod stringr tidyr usethis]; broken = true; }; @@ -20538,10 +20759,12 @@ in with self; { sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; broken = true; }; sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; broken = true; }; + spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; broken = true; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; broken = true; }; specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; + spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; broken = true; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; broken = true; }; @@ -20550,9 +20773,12 @@ in with self; { splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; broken = true; }; spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; broken = true; }; sporm = derive2 { name="sporm"; version="1.1.1"; sha256="1bj795kmzjjcwvnrwg7dfz4jbfj488iydm0s79wrsgdq4chrrgyb"; depends=[]; broken = true; }; + spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; broken = true; }; spots = derive2 { name="spots"; version="0.1.0"; sha256="0q5jfb99hrlz5c1jnn4a96pg07bccbw0khfq8mvaq4r3vdykzmqy"; depends=[Matrix RSpectra]; broken = true; }; + spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; broken = true; }; sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; broken = true; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; broken = true; }; + spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; broken = true; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; broken = true; }; @@ -20572,25 +20798,30 @@ in with self; { stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; broken = true; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; broken = true; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; broken = true; }; - sugarbag = derive2 { name="sugarbag"; version="0.1.3"; sha256="05j2b9vbhpkfr3xkam9wgm0w4k8blnm1ssf9cd6l5f1y2rrqizsv"; depends=[dplyr geosphere lwgeom progress purrr rlang rmapshaper sf tibble tidyr utf8]; broken = true; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; broken = true; }; - superml = derive2 { name="superml"; version="0.5.5"; sha256="13g39ny3k7rwvx681v3bgdqb5s2cz9isphv36bmx7gv43mingadi"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; broken = true; }; support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; broken = true; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; broken = true; }; supreme = derive2 { name="supreme"; version="1.1.0"; sha256="0y5kd911f7h754ppdpw94qw3r8vzz3yhyj5b99h3h96iifydlik6"; depends=[nomnoml shiny yaml]; broken = true; }; surrosurv = derive2 { name="surrosurv"; version="1.1.25"; sha256="05s1skjp1vzwai2nfw65ff4q2qhbj596lhfvzd1gdrbs39r90hxh"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; broken = true; }; + survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; broken = true; }; survMS = derive2 { name="survMS"; version="0.0.1"; sha256="0313pwf0l6wq9l4qjj1al9ybzm79kdxwzdrw6k0af706rxfzzha0"; depends=[ggplot2]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; broken = true; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; broken = true; }; surveysd = derive2 { name="surveysd"; version="1.3.0"; sha256="0d5xjdlccqaa1h437rz5zq6a829rpz426m55jgprhfpcps1wfhbk"; depends=[data_table ggplot2 laeken Rcpp]; broken = true; }; + survivalREC = derive2 { name="survivalREC"; version="1.0"; sha256="1c4qvk2qd5ffn4kfkglwn3iyisnd2y0hzzn92c57vb94d4h057hx"; depends=[KernSmooth survival]; broken = true; }; survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; broken = true; }; + svars = derive2 { name="svars"; version="1.3.9"; sha256="1i9wnfrgr9x6qfqhl9bc4wiz4wxmzjfcmg7wvy3zjrfszmibaf78"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; broken = true; }; svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; broken = true; }; svmplus = derive2 { name="svmplus"; version="1.0.1"; sha256="08cfywrbaxyacqd3l75lysb23ahqbs80959iqkjbb125aafmhvni"; depends=[MASS Matrix quadprog]; broken = true; }; swissdd = derive2 { name="swissdd"; version="1.1.4"; sha256="0ad260b4sfism5q1jxjazg6q33283ncld1m7gfdrps3xg1kyfirs"; depends=[dplyr ggplot2 httr jsonlite lubridate purrr RCurl sf stringr tibble tidyr]; broken = true; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; broken = true; }; + sybil = derive2 { name="sybil"; version="2.2.0"; sha256="05ccq2m4z6akslymdm2vd3x99pi9z0ha1xcnhwvwcvibhqn9hmd5"; depends=[lattice Matrix]; broken = true; }; + sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.2"; sha256="0351qlvyynygjf43q93gkqzzaff3v6gynvbks1ix1mank3afn226"; depends=[sybil]; broken = true; }; sybilccFBA = derive2 { name="sybilccFBA"; version="3.0.1"; sha256="1y94d6ajf0l492nrd8wsz3b6x724zcyhipasgyx65nx3sgha6yp8"; depends=[Matrix sybil]; broken = true; }; + sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.2"; sha256="0s8yqzn7llzby5v1p7is7qv0m8dzwf14r3m32slf898nxrs131xr"; depends=[MASS Matrix sybil]; broken = true; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; broken = true; }; + symphony = derive2 { name="symphony"; version="0.1.0"; sha256="0pwl9ahiv0xxc7j6448cja77fvcng28gdwhhr1z0qmhjsdcxadxq"; depends=[class data_table dplyr ggplot2 ggrastr ggrepel harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; broken = true; }; synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; broken = true; }; synfd = derive2 { name="synfd"; version="0.1.3"; sha256="1h8vfrfw00449vjbj6z4y7m5p7rxzvqjcykyxw5sb473f63gr5px"; depends=[L1pack Rdpack]; broken = true; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; broken = true; }; @@ -20600,6 +20831,7 @@ in with self; { tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; tabxplor = derive2 { name="tabxplor"; version="1.1.0"; sha256="03m4v9zpqy62kjrbjp6asc9k90fy00gl0si34nmdaqdvj1pr2s0f"; depends=[cli crayon data_table DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; broken = true; }; tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; broken = true; }; + tangram = derive2 { name="tangram"; version="0.8.1"; sha256="1vmh3wk4vk25x6i5z9wrxdlhald406a6rfw1pivv7xrw659kaznv"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; broken = true; }; taxotools = derive2 { name="taxotools"; version="0.0.129"; sha256="07i09vx5gwgy2sv4rgklbjsx38yd4pn5xshd8xgipk5yrvvxygd9"; depends=[plyr rmarkdown sqldf stringdist stringi stringr taxize wikitaxa]; broken = true; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; broken = true; }; tcensReg = derive2 { name="tcensReg"; version="0.1.7"; sha256="07wwn65c4q2ngafxhdd9vl0y1wambfy158mf38skxm295yidd05n"; depends=[maxLik Rdpack]; broken = true; }; @@ -20611,7 +20843,6 @@ in with self; { threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; broken = true; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; broken = true; }; thunder = derive2 { name="thunder"; version="0.3.0"; sha256="0lzaab5acgy4s7qkq10l0yfdgrsya74757a025j205jin4m49hai"; depends=[aiRthermo climate dplyr Rcpp]; broken = true; }; - tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; broken = true; }; tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; broken = true; }; tidylab = derive2 { name="tidylab"; version="4.1.1"; sha256="052wgx4dfbr806b9r0cfblkwaf1qnrlf5ngm1c029ggss3br7ki4"; depends=[cli crayon decorators dplyr microservices purrr rstudioapi tibble usethat]; broken = true; }; tidyndr = derive2 { name="tidyndr"; version="0.2.1"; sha256="0scjqnyl78aqqc03adlv3v0i67k3pi2a6m0cg6cxypaxhzzb2xg0"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; broken = true; }; @@ -20627,7 +20858,7 @@ in with self; { tlsh = derive2 { name="tlsh"; version="0.1.0"; sha256="0106y17cr3hq09ahy3rxhxqzgc0655w2jr0s3iyr8zvxsdv5ahb5"; depends=[bit64 blink igraph plyr]; broken = true; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; broken = true; }; tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; broken = true; }; - toRvik = derive2 { name="toRvik"; version="1.1.0"; sha256="1x5xz6wngn6svkf9awzlr71lsp9mk9w640fx5y12aqjrrw9q2x7v"; depends=[cli crayon data_table dplyr glue httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tidyr withr]; broken = true; }; + toRvik = derive2 { name="toRvik"; version="1.1.1"; sha256="09b4c5j3wsiawx5pc1n6ga4qs1s0ybavh1drz6s2ikrpdvb62724"; depends=[cli crayon data_table dplyr glue httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tidyr withr]; broken = true; }; tobit1 = derive2 { name="tobit1"; version="0.1-3"; sha256="08rq1h3psxjzzfna6krji4ixrbd43v77qb9k00v1rysarlqyg0k1"; depends=[Formula generics margins numDeriv prediction Rdpack tibble]; broken = true; }; torchaudio = derive2 { name="torchaudio"; version="0.2.0"; sha256="1bzx428lzjdwb9ds2pcq7nlalg75s7bvmiimjw3k8lvbq50yjlyh"; depends=[fs glue rappdirs Rcpp rlang torch withr]; broken = true; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; broken = true; }; @@ -20636,20 +20867,25 @@ in with self; { trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; broken = true; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; broken = true; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; broken = true; }; - treePlotArea = derive2 { name="treePlotArea"; version="1.3.0"; sha256="0y433q57xw1dxlxxqkyrfjdcgymcccakp1as82y949zxl3jbra4r"; depends=[fritools sf]; broken = true; }; + translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; broken = true; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; broken = true; }; treeman = derive2 { name="treeman"; version="1.1.4"; sha256="1rlq8sklvpj6an8x9wvs3501y6dpl2vhl5zfmz0yvmif04msf49v"; depends=[ape bigmemory plyr RJSONIO stringr]; broken = true; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; + treetop = derive2 { name="treetop"; version="0.0.4"; sha256="0lisrbmzkil723jwcj422zglr78lbryny02wmnaw7zv2w9gw3xac"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgeos rgl sf shiny sp spatstat_core spatstat_geom stars]; broken = true; }; triggerstrategy = derive2 { name="triggerstrategy"; version="1.1.0"; sha256="1gly2brw0glcnx8is4mrlrbxgnma57vpfid5lkpz2wdakwn7y2by"; depends=[GA gsrsb ldbounds mvtnorm nleqslv]; broken = true; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; broken = true; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; broken = true; }; + trip = derive2 { name="trip"; version="1.8.5"; sha256="160dp9ji8j4w2fwh62l6cp485iy5n5is451rbgf28d5q0prd912c"; depends=[crsmeta dplyr geodist glue MASS raster reproj rlang sp spatstat_core spatstat_geom traipse viridis]; broken = true; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; broken = true; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; broken = true; }; truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; broken = true; }; + truthiness = derive2 { name="truthiness"; version="1.2.5"; sha256="0cssqlrilx2lglr2f53yysqgf604g4y326ijf8avlg6v5l6hlcr1"; depends=[dplyr DT emmeans ez forcats ggplot2 lme4 magrittr MASS ordinal purrr Rdpack readr rmarkdown tibble tidyr]; broken = true; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; broken = true; }; + tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; broken = true; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; broken = true; }; tumblR = derive2 { name="tumblR"; version="1.2"; sha256="1qili2c9wb6hpjjf7m0gyvdymzls5w4pghjkyi3sbp0q7ayhbh12"; depends=[httr RCurl RJSONIO stringr]; broken = true; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; broken = true; }; + tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; broken = true; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; broken = true; }; twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; broken = true; }; uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; @@ -20658,12 +20894,12 @@ in with self; { unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; broken = true; }; + uniswappeR = derive2 { name="uniswappeR"; version="0.6.0"; sha256="0n180v0kya6djkd3zngn4zvqzga3dhav41r94ckbzb1yww5ck1vd"; depends=[dplyr ggplot2 ghql httr jsonlite lubridate patchwork purrr reticulate rlang scales tibble tidyr]; broken = true; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; broken = true; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; usethat = derive2 { name="usethat"; version="0.3.0"; sha256="0i6nw3vgll6i31l95iflhq88ssw86pmz46jgw8g6k6f58rgnykmc"; depends=[microservices purrr usethis withr]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; - vapour = derive2 { name="vapour"; version="0.8.5"; sha256="14sxn4vdig31vflrbyzpkqfwdcf9xj468wxd7yicvca0ibmr80yf"; depends=[Rcpp]; broken = true; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; broken = true; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; broken = true; }; vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; broken = true; }; @@ -20693,13 +20929,13 @@ in with self; { wordbankr = derive2 { name="wordbankr"; version="1.0.0"; sha256="1jcls9pw0qwf14d9f1kwyd77yrwmcx7k4hzs1h2dli29mvi6hcxg"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; broken = true; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; broken = true; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; broken = true; }; - wwntests = derive2 { name="wwntests"; version="1.0.1"; sha256="1algk2f55dg526zjw2ycfx2dq13m3lvfs75444iyp8fvq7j3wbcs"; depends=[ftsa MASS rainbow sde]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; broken = true; }; xlsimple = derive2 { name="xlsimple"; version="1.0.5"; sha256="1snamzq6yljiqakqd6492ylznr9kfl8w0lnaayfn14fk3w03skck"; depends=[XLConnect]; broken = true; }; xmeta = derive2 { name="xmeta"; version="1.3-0"; sha256="1yyqxrdfn23sqfa9765vj5fcwz2v46jvaa9wjkv1w4mvb2k2si4k"; depends=[aod glmmML MASS metafor mvmeta numDeriv plotrix]; broken = true; }; xpose_nlmixr = derive2 { name="xpose.nlmixr"; version="0.3.0"; sha256="1qxcq18mp5zxc7karixjfi93zm5mvpfnvp8sd8x0ibdbq8vk20my"; depends=[crayon dplyr ggplot2 magrittr nlme nlmixr rlang stringr tibble tidyr vpc xpose]; broken = true; }; xspliner = derive2 { name="xspliner"; version="0.0.4"; sha256="1j3wlw39r3ahhdfq3rks1zhnlmz14f4wk7bl7gf94yffasqg6k2r"; depends=[dplyr ggplot2 magrittr mgcv pdp pROC purrr tidyr]; broken = true; }; + xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; broken = true; }; xtune = derive2 { name="xtune"; version="0.1.0"; sha256="0bpf1cx7v7q0a1jip04xd0bjg9ilagrf7wg7a9y0m6wgw7s2b9jn"; depends=[glmnet selectiveInference]; broken = true; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; broken = true; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; broken = true; }; @@ -20709,4 +20945,6 @@ in with self; { yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; broken = true; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; broken = true; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; broken = true; }; + zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; broken = true; }; + ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; broken = true; }; } diff --git a/pkgs/development/tools/analysis/nix-linter/default.nix b/pkgs/development/tools/analysis/nix-linter/default.nix index cd33742623709..aa60f5aa757d0 100644 --- a/pkgs/development/tools/analysis/nix-linter/default.nix +++ b/pkgs/development/tools/analysis/nix-linter/default.nix @@ -40,4 +40,8 @@ mkDerivation rec { homepage = "https://github.com/Synthetica9/nix-linter"; license = lib.licenses.bsd3; maintainers = [ lib.maintainers.marsam ]; + + # doesn't build on ghc92 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/pkgs/development/tools/analysis/radare2/default.nix b/pkgs/development/tools/analysis/radare2/default.nix index cd03eb0bab80a..72562d4935bdc 100644 --- a/pkgs/development/tools/analysis/radare2/default.nix +++ b/pkgs/development/tools/analysis/radare2/default.nix @@ -30,7 +30,7 @@ let # FIXME: Compare revision with - # https://github.com/radareorg/radare2/blob/master/libr/asm/arch/arm/v35arm64/Makefile#L26-L27 + # https://github.com/radareorg/radare2/blob/master/libr/arch/p/arm/v35arm64/Makefile#L26-L27 arm64 = fetchFromGitHub { owner = "radareorg"; repo = "vector35-arch-arm64"; @@ -47,21 +47,23 @@ let in stdenv.mkDerivation rec { pname = "radare2"; - version = "5.7.8"; + version = "5.8.0"; src = fetchFromGitHub { owner = "radare"; repo = "radare2"; rev = 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"winapi-x86_64-pc-windows-gnu", +] + +[[package]] +name = "winapi-i686-pc-windows-gnu" +version = "0.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6" + +[[package]] +name = "winapi-util" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178" +dependencies = [ + "winapi", +] + +[[package]] +name = "winapi-x86_64-pc-windows-gnu" +version = "0.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" + +[[package]] +name = "wyz" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "85e60b0d1b5f99db2556934e21937020776a5d31520bf169e851ac44e6420214" diff --git a/pkgs/development/tools/analysis/svlint/default.nix b/pkgs/development/tools/analysis/svlint/default.nix index ef4e31e9481f3..757eb56a3bf7d 100644 --- a/pkgs/development/tools/analysis/svlint/default.nix +++ b/pkgs/development/tools/analysis/svlint/default.nix @@ -5,16 +5,21 @@ rustPlatform.buildRustPackage rec { pname = "svlint"; - version = "0.5.1"; + version = "0.6.0"; src = fetchFromGitHub { owner = "dalance"; repo = "svlint"; rev = "v${version}"; - sha256 = "sha256-BgkzbKRcZkot3qkwPqSE9QkH3A3HNDuLjpFzKsU+Wb0="; + sha256 = "sha256-dtfOSj0WnNyQLimXkSK+L8pWL/oc0nIugDyUmGaBP3w="; }; - cargoSha256 = "sha256-HeFh8H7IN3m4HiEH1QbCBROslzVCzYxGIaeyM4K7gcs="; + cargoLock.lockFile = ./Cargo.lock; + postPatch = '' + cp ${./Cargo.lock} Cargo.lock + ''; + + cargoSha256 = "sha256-A9cL5veliWDNp1RbhOzR1e2X7c7mTAnl1qMATaMhhT8="; meta = with lib; { description = "SystemVerilog linter"; diff --git a/pkgs/development/tools/ansible-language-server/default.nix b/pkgs/development/tools/ansible-language-server/default.nix index 8d9b1f0ca50f7..a1547675dc083 100644 --- a/pkgs/development/tools/ansible-language-server/default.nix +++ b/pkgs/development/tools/ansible-language-server/default.nix @@ -6,16 +6,16 @@ buildNpmPackage rec { pname = "ansible-language-server"; - version = "1.0.2-next.0"; + version = "1.0.3"; src = fetchFromGitHub { owner = "ansible"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-E4xWwqXl5n/eChJ8JM32K2gTYE/F8Y76J3Sll++48Uo="; + hash = "sha256-+42fZ4ILUHg/KcnllUaFYYPBKHxauagbsVdIY1MgwSI="; }; - npmDepsHash = "sha256-8FP6hF85w1Zbhiwi2V350ZWFAykAfvsXRGL8bvGk1XE="; + npmDepsHash = "sha256-DRXIbIogMeiJvZOB44hKkkfc3dg8mscnV6k2rUvYCNs="; npmBuildScript = "compile"; # We remove the prepare and prepack scripts because they run the diff --git a/pkgs/development/tools/azure-static-sites-client/default.nix b/pkgs/development/tools/azure-static-sites-client/default.nix new file mode 100644 index 0000000000000..60d1511472515 --- /dev/null +++ b/pkgs/development/tools/azure-static-sites-client/default.nix @@ -0,0 +1,97 @@ +{ lib +, stdenv +, fetchurl +, autoPatchelfHook +, curl +, icu70 +, libkrb5 +, lttng-ust +, openssl_1_1 +, zlib +, azure-static-sites-client + # "latest", "stable" or "backup" +, versionFlavor ? "stable" +}: +let + versions = lib.importJSON ./versions.json; + flavor = with lib; head (filter (x: x.version == versionFlavor) versions); + fetchBinary = runtimeId: fetchurl { + url = flavor.files.${runtimeId}.url; + sha256 = flavor.files.${runtimeId}.sha; + }; + sources = { + "x86_64-linux" = fetchBinary "linux-x64"; + "x86_64-darwin" = fetchBinary "macOS"; + }; +in +stdenv.mkDerivation { + pname = "StaticSitesClient-${versionFlavor}"; + version = flavor.buildId; + + src = sources.${stdenv.targetPlatform.system} or (throw "Unsupported platform"); + + nativeBuildInputs = [ + autoPatchelfHook + ]; + + buildInputs = [ + curl + icu70 + openssl_1_1 + libkrb5 + lttng-ust + stdenv.cc.cc.lib + zlib + ]; + + dontUnpack = true; + dontBuild = true; + + installPhase = '' + runHook preInstall + + install -m755 "$src" -D "$out/bin/StaticSitesClient" + + for icu_lib in 'icui18n' 'icuuc' 'icudata'; do + patchelf --add-needed "lib''${icu_lib}.so.${with lib; head (splitVersion (getVersion icu70.name))}" "$out/bin/StaticSitesClient" + done + + patchelf --add-needed 'libgssapi_krb5.so' \ + --add-needed 'liblttng-ust.so' \ + --add-needed 'libssl.so.1.1' \ + "$out/bin/StaticSitesClient" + + runHook postInstall + ''; + + # Stripping kills the binary + dontStrip = true; + + # Just make sure the binary executes sucessfully + doInstallCheck = true; + installCheckPhase = '' + runHook preInstallCheck + + $out/bin/StaticSitesClient version + + runHook postInstallCheck + ''; + + passthru = { + # Create tests for all flavors + tests = with lib; genAttrs (map (x: x.version) versions) (versionFlavor: + azure-static-sites-client.override { inherit versionFlavor; } + ); + updateScript = ./update.sh; + }; + + meta = with lib; { + description = "Azure static sites client"; + homepage = "https://github.com/Azure/static-web-apps-cli"; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + license = licenses.unfree; + mainProgram = "StaticSitesClient"; + maintainers = with maintainers; [ veehaitch ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/development/tools/azure-static-sites-client/update.sh b/pkgs/development/tools/azure-static-sites-client/update.sh new file mode 100755 index 0000000000000..156771e7f12bc --- /dev/null +++ b/pkgs/development/tools/azure-static-sites-client/update.sh @@ -0,0 +1,9 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p curl + +set -euo pipefail + +dirname="$(dirname "$0")" + +curl -O --silent --output-dir "$dirname" 'https://swalocaldeploy.azureedge.net/downloads/versions.json' +echo "" >> "$dirname/versions.json" diff --git a/pkgs/development/tools/azure-static-sites-client/versions.json b/pkgs/development/tools/azure-static-sites-client/versions.json new file mode 100644 index 0000000000000..0cb5de0902691 --- /dev/null +++ b/pkgs/development/tools/azure-static-sites-client/versions.json @@ -0,0 +1,59 @@ +[ + { + "version": "latest", + "buildId": "1.0.021731", + "publishDate": "2022-12-14T02:22:20.0230853Z", + "files": { + "linux-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/linux/StaticSitesClient", + "sha": "d2f88cf8b855169534c7e330dd95385b993b1c0f83331306e685faa8468a82b5" + }, + "win-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/windows/StaticSitesClient.exe", + "sha": "525d13ebffd79ea9663a15a4bd2e6d49bca72d20aa44838aa4b83133943d450c" + }, + "osx-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/macOS/StaticSitesClient", + "sha": "5de3ac4b205d3871e7a8ff3b5869f2a57002277ac7fa6317032239d114e25ab8" + } + } + }, + { + "version": "stable", + "buildId": "1.0.021731", + "publishDate": "2022-12-14T02:22:20.0230853Z", + "files": { + "linux-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/linux/StaticSitesClient", + "sha": "d2f88cf8b855169534c7e330dd95385b993b1c0f83331306e685faa8468a82b5" + }, + "win-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/windows/StaticSitesClient.exe", + "sha": "525d13ebffd79ea9663a15a4bd2e6d49bca72d20aa44838aa4b83133943d450c" + }, + "osx-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/macOS/StaticSitesClient", + "sha": "5de3ac4b205d3871e7a8ff3b5869f2a57002277ac7fa6317032239d114e25ab8" + } + } + }, + { + "version": "backup", + "buildId": "1.0.021671", + "publishDate": "2022-12-08T00:34:47.6310685Z", + "files": { + "linux-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021671/linux/StaticSitesClient", + "sha": "306c2d24cbc6461cdf1fe29e9206ccb9d452ba3514ee9d67a1d7e0f8edbc036f" + }, + "win-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021671/windows/StaticSitesClient.exe", + "sha": "ee868ca5e73a6ad8758698c168bb01d07b66288d353813fefe41d441f82b9f1f" + }, + "osx-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021671/macOS/StaticSitesClient", + "sha": "5ef513530a45d4b8e135e272f7e7112e900fbb8c8137c19e645a694e71b98c74" + } + } + } +] diff --git a/pkgs/development/tools/build-managers/rebar3/default.nix b/pkgs/development/tools/build-managers/rebar3/default.nix index 56859969708e9..8a0ff951b9da3 100644 --- a/pkgs/development/tools/build-managers/rebar3/default.nix +++ b/pkgs/development/tools/build-managers/rebar3/default.nix @@ -94,7 +94,11 @@ let fi ''; }; - rebar3WithPlugins = { plugins ? [ ], globalPlugins ? [ ] }: + + # Alias rebar3 so we can use it as default parameter below + _rebar3 = rebar3; + + rebar3WithPlugins = { plugins ? [ ], globalPlugins ? [ ], rebar3 ? _rebar3 }: let pluginLibDirs = map (p: "${p}/lib/erlang/lib") (lib.unique (plugins ++ globalPlugins)); globalPluginNames = lib.unique (map (p: p.packageName) globalPlugins); diff --git a/pkgs/development/tools/build-managers/scala-cli/sources.json b/pkgs/development/tools/build-managers/scala-cli/sources.json index 6fb1463abcfee..f2d895598f642 100644 --- a/pkgs/development/tools/build-managers/scala-cli/sources.json +++ b/pkgs/development/tools/build-managers/scala-cli/sources.json @@ -1,17 +1,21 @@ { - "version": "0.1.17", + "version": "0.1.19", "assets": { "aarch64-darwin": { "asset": "scala-cli-aarch64-apple-darwin.gz", - "sha256": "0p3z4wvindcb9wahq2q8ca24zgl05qb3z2asmqi2z54pqfkc21d7" + "sha256": "1n5x07n3g7r8cx22mv9prfq1gs9sjj41xdj615lbs4dbfjp8z66d" + }, + "aarch64-linux": { + "asset": "scala-cli-aarch64-pc-linux.gz", + "sha256": "02mwinm4ggpqr9j6c0ap1nsa4bgad5h3xgkplamwrzqa2kvqxx2i" }, "x86_64-darwin": { "asset": "scala-cli-x86_64-apple-darwin.gz", - "sha256": "17zj3g62b27blbdfa3j4lzvs3v13jyy7428zxalkpdx8ixy0ghyy" + "sha256": "0cz5dd6f3j6czrbjiz9l6bf0ycfrba9h2wjpa6l80nn86yyr7i4r" }, "x86_64-linux": { "asset": "scala-cli-x86_64-pc-linux.gz", - "sha256": "0dm7jhsvrjb73wyvvds17r779gcm00yvsy31arc8552df5nkq4iz" + "sha256": "19fcj631gwg6cjx3q5rqywgdafw18bdjkan52jj2awh2vxpikgdm" } } } diff --git a/pkgs/development/tools/bundletool/default.nix b/pkgs/development/tools/bundletool/default.nix index 6e683e09391a8..6863ef9e0fd29 100644 --- a/pkgs/development/tools/bundletool/default.nix +++ b/pkgs/development/tools/bundletool/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "bundletool"; - version = "1.13.1"; + version = "1.13.2"; src = fetchurl { url = "https://github.com/google/bundletool/releases/download/${version}/bundletool-all-${version}.jar"; - sha256 = "sha256-owXj7FSR98IPuaWkUGpv4e6c4c6XIYFsxZZH0OWYcu8="; + sha256 = "sha256-sbX7IYFcU9gwKzHKC8xtmZKVE2XImeNT4RYOx+cSI2Y="; }; dontUnpack = true; diff --git a/pkgs/development/tools/changie/default.nix b/pkgs/development/tools/changie/default.nix index b1ebe71d11179..0bf4f9be5920f 100644 --- a/pkgs/development/tools/changie/default.nix +++ b/pkgs/development/tools/changie/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "changie"; - version = "1.10.1"; + version = "1.10.2"; src = fetchFromGitHub { rev = "v${version}"; owner = "miniscruff"; repo = pname; - sha256 = "sha256-c7QEDyxk3Y/niQtVNQiS4OS/nHkldtjEcaXXR7rx/QI="; + sha256 = "sha256-1UUF82sYzZDzlhPD8R8QIfR/Vm/9uUAxHzai+A1FCaQ="; }; - vendorSha256 = "sha256-AoQdOw5Yw54mGmwfozkxtfo3ZhWGUbBoHc3Iqy80x38="; + vendorSha256 = "sha256-oz327wlTrFCj8Hf1wPiND40Ew4kBB/k5doj1us8lhm4="; patches = [ ./skip-flaky-test.patch ]; diff --git a/pkgs/development/tools/checkmate/default.nix b/pkgs/development/tools/checkmate/default.nix index 3cefae1bfffcf..b14079c749dd5 100644 --- a/pkgs/development/tools/checkmate/default.nix +++ b/pkgs/development/tools/checkmate/default.nix @@ -5,22 +5,23 @@ buildGoModule rec { pname = "checkmate"; - version = "0.8.2"; + version = "0.8.4"; src = fetchFromGitHub { owner = "adedayo"; repo = pname; rev = "v${version}"; - sha256 = "sha256-v9xVJFX3YJQU9z9L7dhy0S1FvpWoDad36Lq3w4VW0xA="; + hash = "sha256-tgiZDTPIAYirPX6nGPEAt6BoYEC8uUJwT6zuHJqPF1w="; }; - vendorSha256 = "sha256-8/EGoY3+th34gAACDoEHgwhUFmyyKecnQP/WTe56iCQ="; + vendorHash = "sha256-eL1fLJwzVpU9NqaAl5R/fbaqI3AnEkl6EuPkMTuY86w="; subPackages = [ "." ]; meta = with lib; { description = "Pluggable code security analysis tool"; homepage = "https://github.com/adedayo/checkmate"; + changelog = "https://github.com/adedayo/checkmate/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix b/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix index 37b36ff3ed5b8..2a7111b352ecc 100644 --- a/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix +++ b/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "cirrus-cli"; - version = "0.93.0"; + version = "0.94.4"; src = fetchFromGitHub { owner = "cirruslabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-exGOCBKPHuVBaFXd+/jbjAid7ZDodtZ/h/OWp/NBOhE="; + sha256 = "sha256-PnO9M3CQQnZotzCuE2rlGsoBzNO0PdsoMLlY3tNyEyk="; }; vendorSha256 = "sha256-gotc9M2UkRJtE4LZPCpqDTXQ/cnN4tk+3HG243tFoss="; diff --git a/pkgs/development/tools/continuous-integration/dagger/default.nix b/pkgs/development/tools/continuous-integration/dagger/default.nix index 78c93efc2b9f7..a1872d285db15 100644 --- a/pkgs/development/tools/continuous-integration/dagger/default.nix +++ b/pkgs/development/tools/continuous-integration/dagger/default.nix @@ -1,23 +1,29 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, testers, dagger }: buildGoModule rec { pname = "dagger"; - version = "0.2.36"; + version = "0.3.7"; src = fetchFromGitHub { owner = "dagger"; repo = "dagger"; rev = "v${version}"; - sha256 = "sha256-U+MdX/7RIrhnPjUjzYAQEVeHQUpgMtKanvjPLBjCNSY="; + hash = "sha256-67ILrOVG31LrLgMcT+bZyWQ3lSahWOdWRyWpgUYSr4I="; }; - vendorSha256 = "sha256-ArdqEHECnGTMs3sJrPIAfmTT0D2V8SHyTYXmDODVtuo="; + vendorHash = "sha256-bidJ7V/+yU3pBVXMdD4S0QVh9gKcvRN46Ut5OdSrnNc="; + proxyVendor = true; subPackages = [ "cmd/dagger" ]; - ldflags = [ "-s" "-w" "-X go.dagger.io/dagger/version.Version=${version}" ]; + ldflags = [ "-s" "-w" "-X main.version=${version}" ]; + + passthru.tests.version = testers.testVersion { + package = dagger; + command = "dagger version"; + }; meta = with lib; { description = "A portable devkit for CICD pipelines"; diff --git a/pkgs/development/tools/continuous-integration/drone/default.nix b/pkgs/development/tools/continuous-integration/drone/default.nix index b120df52f590f..9e4dda5475448 100644 --- a/pkgs/development/tools/continuous-integration/drone/default.nix +++ b/pkgs/development/tools/continuous-integration/drone/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "drone.io${lib.optionalString (!enableUnfree) "-oss"}"; - version = "2.15.0"; + version = "2.16.0"; src = fetchFromGitHub { owner = "harness"; repo = "drone"; rev = "v${version}"; - sha256 = "sha256-2Yu0EFMuAlG6/3YuDKQpiZU5/fBexWJtsrU1MNABSyA="; + sha256 = "sha256-bNvXAcFMPK8C/QN7VTdnicewRfaEtyJ45MhQSTNYp3U="; }; - vendorSha256 = "sha256-ijUHMAcSDnZnhlzaYeD411L3ybRc08ac9jbvDDc2D4M="; + vendorSha256 = "sha256-9EKXMy9g3kTpHer27ouuFDjh7zSEeBcpI8nH1VkMA9M="; tags = lib.optionals (!enableUnfree) [ "oss" "nolimit" ]; diff --git a/pkgs/development/tools/continuous-integration/github-runner/default.nix b/pkgs/development/tools/continuous-integration/github-runner/default.nix index ab762a13e99fc..6527f2311de3e 100644 --- a/pkgs/development/tools/continuous-integration/github-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/github-runner/default.nix @@ -28,10 +28,6 @@ let inherit sha256; }; - sdkSource = linkFarmFromDrvs "nuget-sdk-packages" ( - dotnetSdk.passthru.packages { inherit fetchNuGet; } - ); - nugetSource = linkFarmFromDrvs "nuget-packages" ( import ./deps.nix { inherit fetchNuGet; } ); @@ -49,15 +45,13 @@ let in stdenv.mkDerivation rec { pname = "github-runner"; - version = "2.300.0"; - - inherit sdkSource; + version = "2.300.2"; src = fetchFromGitHub { owner = "actions"; repo = "runner"; rev = "v${version}"; - hash = "sha256-pEBudX285qMz0W8Sog0ph2CA5UclBItQ+ixaBi6dl8I="; + hash = "sha256-4TCClrCCHMVtbGAlxmAhZt63nQlMxkaLLZ9EOgurSMA="; }; nativeBuildInputs = [ @@ -124,7 +118,7 @@ stdenv.mkDerivation rec { # Restore the dependencies dotnet restore src/ActionsRunner.sln \ --runtime "${runtimeId}" \ - --source "${sdkSource}" \ + --source "${dotnetSdk.packages}" \ --source "${nugetSource}" runHook postConfigure @@ -339,6 +333,7 @@ stdenv.mkDerivation rec { printf "\n* Setup workdir\n" workdir="$(mktemp -d /tmp/${pname}.XXX)" + HOME="$workdir"/.fake-home cp -rT "${src}" "$workdir" chmod -R +w "$workdir" trap 'rm -rf "$workdir"' EXIT @@ -353,7 +348,7 @@ stdenv.mkDerivation rec { '') (lib.attrValues runtimeIds)} printf "\n* Make %s file\n" "$(basename "$deps_file")" - nuget-to-nix "$workdir/nuget_pkgs" "${sdkSource}" > "$deps_file" + nuget-to-nix "$workdir/nuget_pkgs" "${dotnetSdk.packages}" > "$deps_file" printf "\n* Dependency file writen to %s" "$deps_file" ''; }; diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index 2ab40ae599faa..6d9563f322185 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,7 +1,7 @@ { lib, buildGoModule, fetchFromGitLab, fetchurl, bash }: let - version = "15.5.1"; + version = "15.7.1"; in buildGoModule rec { inherit version; @@ -17,13 +17,13 @@ buildGoModule rec { # For patchShebangs buildInputs = [ bash ]; - vendorSha256 = "sha256-IcsYH1V3b5IUY2JqOADJrc4lkng1GS7lndfHObRQbxU="; + vendorSha256 = "sha256-GyhDns10eekU05D7SGbhYYlpK3OIajtUXXOcWgprBPc="; src = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-runner"; rev = "v${version}"; - sha256 = "sha256-ZvQaA4DSuEIdHEoRKJg5tOnBQgf26paTAiWy6RLRG3o="; + sha256 = "sha256-YHqezwud+/osCiqeR3QUvANFRU/oR451act+Crh4CRE="; }; patches = [ @@ -46,6 +46,7 @@ buildGoModule rec { rm executors/docker/terminal_test.go rm executors/docker/docker_test.go rm helpers/docker/auth/auth_test.go + rm executors/docker/services_test.go ''; postInstall = '' diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch b/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch index 5bffd0f4f75ee..6f27ef71c9574 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch @@ -1,25 +1,23 @@ diff --git a/shells/bash_test.go b/shells/bash_test.go -index b8a48f85e..0e3173fc3 100644 +index 9ed9e65ff..02b6e6d5f 100644 --- a/shells/bash_test.go +++ b/shells/bash_test.go -@@ -4,12 +4,9 @@ - package shells +@@ -4,11 +4,9 @@ package shells import ( + "path" - "runtime" "testing" "github.com/stretchr/testify/assert" - "github.com/stretchr/testify/require" -- "gitlab.com/gitlab-org/gitlab-runner/common" + "gitlab.com/gitlab-org/gitlab-runner/common" ) - func TestBash_CommandShellEscapesLegacy(t *testing.T) { -@@ -84,62 +81,3 @@ func TestBash_CheckForErrors(t *testing.T) { - }) +@@ -90,65 +88,6 @@ func TestBash_CheckForErrors(t *testing.T) { } } -- + -func TestBash_GetConfiguration(t *testing.T) { - tests := map[string]struct { - info common.ShellScriptInfo @@ -78,3 +76,7 @@ index b8a48f85e..0e3173fc3 100644 - }) - } -} +- + func Test_BashWriter_isTmpFile(t *testing.T) { + tmpDir := "/foo/bar" + bw := BashWriter{TemporaryPath: tmpDir} diff --git a/pkgs/development/tools/ctlptl/default.nix b/pkgs/development/tools/ctlptl/default.nix index bf49c850881b7..f4b155da72651 100644 --- a/pkgs/development/tools/ctlptl/default.nix +++ b/pkgs/development/tools/ctlptl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "ctlptl"; - version = "0.8.12"; + version = "0.8.15"; src = fetchFromGitHub { owner = "tilt-dev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-h0JR641+VBiTJY8INXhxwvsyZGLH4YRdkddwo2IUDQk="; + sha256 = "sha256-JCBlP8ESCiqr4pk8QyG5CVs+3qSlnvw0jYS5R0Civk0="; }; vendorSha256 = "sha256-M9B/rfMBjYJb9szmYPVZqURlcv62qHOLJ3ka0v++z0s="; diff --git a/pkgs/development/tools/database/clickhouse-backup/default.nix b/pkgs/development/tools/database/clickhouse-backup/default.nix index 4db8dbe263ffc..81c53082b7ec3 100644 --- a/pkgs/development/tools/database/clickhouse-backup/default.nix +++ b/pkgs/development/tools/database/clickhouse-backup/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "clickhouse-backup"; - version = "2.1.2"; + version = "2.1.3"; src = fetchFromGitHub { owner = "AlexAkulov"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Vc9zPERRF6AWSOGSiOe6n33Ioc3uOtHQEehfMhPkSFk="; + sha256 = "sha256-RaThNBTRBECSeSeJOQ2UsrkBHjSjrS91vIRF/4MGek4="; }; - vendorSha256 = "sha256-kbIztD0g+92gxxBYhWILudgFRFCshagmAUs8bY/Z8yg="; + vendorSha256 = "sha256-sSN+HAUC9rJc9XMTG8H+Zg7mzZSVxn6Z7dixJ10mOuM="; ldflags = [ "-X main.version=${version}" diff --git a/pkgs/development/tools/database/prisma-engines/default.nix b/pkgs/development/tools/database/prisma-engines/default.nix index b0a417d1b0541..a811426a6d211 100644 --- a/pkgs/development/tools/database/prisma-engines/default.nix +++ b/pkgs/development/tools/database/prisma-engines/default.nix @@ -13,19 +13,19 @@ # function correctly. rustPlatform.buildRustPackage rec { pname = "prisma-engines"; - version = "4.7.0"; + version = "4.8.0"; src = fetchFromGitHub { owner = "prisma"; repo = "prisma-engines"; rev = version; - sha256 = "sha256-mpKrCRZQ7CS/Rf2KfpszE2/KACNClHxfrLFJ+iaVhZE="; + sha256 = "sha256-+L8w7FG74V6z9IUfkQHo2B7/vjLhdVHeoVBttgqoUNc="; }; # Use system openssl. OPENSSL_NO_VENDOR = 1; - cargoSha256 = "sha256-NIbOx0xR5qStIfe8TptMqu3Dx6zVl2qBDzr/41ANsrk="; + cargoSha256 = "sha256-CQFTO43/b0ymYtnAtvySrp8cOF7rRdzY8mvcYTiiUp0="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/database/sqlfluff/default.nix b/pkgs/development/tools/database/sqlfluff/default.nix index 7015050e2d6f1..b93b1ab763cc7 100644 --- a/pkgs/development/tools/database/sqlfluff/default.nix +++ b/pkgs/development/tools/database/sqlfluff/default.nix @@ -5,13 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "sqlfluff"; - version = "1.4.2"; + version = "1.4.5"; + format = "setuptools"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-B1tqL8bc+mWEjQrS4lQM55/ahOeUyuE8VBtk6QMj6Mk="; + hash = "sha256-Kc0doBR2iOy54arxOYXH5eHlcM7pXFVUqedopsZH8rE="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -43,9 +44,10 @@ python3.pkgs.buildPythonApplication rec { disabledTestPaths = [ # Don't run the plugin related tests - "test/core/plugin_test.py" - "plugins/sqlfluff-templater-dbt" "plugins/sqlfluff-plugin-example/test/rules/rule_test_cases_test.py" + "plugins/sqlfluff-templater-dbt" + "test/core/plugin_test.py" + "test/diff_quality_plugin_test.py" ]; disabledTests = [ @@ -62,6 +64,7 @@ python3.pkgs.buildPythonApplication rec { meta = with lib; { description = "SQL linter and auto-formatter"; homepage = "https://www.sqlfluff.com/"; + changelog = "https://github.com/sqlfluff/sqlfluff/blob/${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix index 1a94a3791d624..3c87fe5d01487 100644 --- a/pkgs/development/tools/doctl/default.nix +++ b/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.90.0"; + version = "1.91.0"; vendorSha256 = null; @@ -31,7 +31,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "sha256-b6Tj1A2kF5dZ/dPSGAq9Bd0PB7zQ61RIKTKhFv422tw="; + sha256 = "sha256-hX9doUNxqkJujts9yYNvGSTq3nkaan1HqTHZBcO1hCs="; }; meta = with lib; { diff --git a/pkgs/development/tools/electron/default.nix b/pkgs/development/tools/electron/default.nix index c197aa8b9ec5d..5c0838fce73f4 100644 --- a/pkgs/development/tools/electron/default.nix +++ b/pkgs/development/tools/electron/default.nix @@ -16,6 +16,7 @@ , libappindicator-gtk3 , libxshmfence , libglvnd +, wayland }@args: let diff --git a/pkgs/development/tools/electron/generic.nix b/pkgs/development/tools/electron/generic.nix index 8c64b86b43a1c..76f2bc427590f 100644 --- a/pkgs/development/tools/electron/generic.nix +++ b/pkgs/development/tools/electron/generic.nix @@ -16,6 +16,7 @@ , libappindicator-gtk3 , libxshmfence , libglvnd +, wayland }: version: hashes: @@ -64,7 +65,7 @@ let }; electronLibPath = with lib; makeLibraryPath ( - [ libuuid at-spi2-atk at-spi2-core libappindicator-gtk3 ] + [ libuuid at-spi2-atk at-spi2-core libappindicator-gtk3 wayland ] ++ optionals (versionAtLeast version "9.0.0") [ libdrm mesa ] ++ optionals (versionOlder version "10.0.0") [ libXScrnSaver ] ++ optionals (versionAtLeast version "11.0.0") [ libxkbcommon ] diff --git a/pkgs/development/tools/fortls/default.nix b/pkgs/development/tools/fortls/default.nix new file mode 100644 index 0000000000000..9aed276a63fa5 --- /dev/null +++ b/pkgs/development/tools/fortls/default.nix @@ -0,0 +1,35 @@ +{ buildPythonApplication +, lib +, fetchFromGitHub +, setuptools-scm +, json5 +, packaging +}: + +buildPythonApplication rec { + pname = "fortls"; + version = "2.13.0"; + + src = fetchFromGitHub { + owner = "fortran-lang"; + repo = pname; + rev = "v${version}"; + hash = "sha256-kFk2Dlnb0FXM3Ysvsy+g2AAMgpWmwzxuyJPovDm/FJU="; + }; + + nativeBuildInputs = [ setuptools-scm ]; + + propagatedBuildInputs = [ json5 packaging ]; + + preBuild = "export SETUPTOOLS_SCM_PRETEND_VERSION=${version}"; + + doCheck = true; + checkPhase = "$out/bin/fortls --help 1>/dev/null"; + + meta = with lib; { + description = "Fortran Language Server "; + homepage = "https://github.com/fortran-lang/fortls"; + license = [ licenses.mit ]; + maintainers = [ maintainers.sheepforce ]; + }; +} diff --git a/pkgs/development/tools/fq/default.nix b/pkgs/development/tools/fq/default.nix index 293e165082765..2145a3ab74c1d 100644 --- a/pkgs/development/tools/fq/default.nix +++ b/pkgs/development/tools/fq/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "fq"; - version = "0.1.0"; + version = "0.2.0"; src = fetchFromGitHub { owner = "wader"; repo = "fq"; rev = "v${version}"; - sha256 = "sha256-ZUbeAZGHG7I4NwJZjI92isIMX8M675oI833v3uKZE7U="; + sha256 = "sha256-OAdKt5RgLVoTmccN50TUwUAU7VLiTU9hEnDAKxKBRzI="; }; - vendorSha256 = "sha256-GGbKoLj8CyfqB90QnOsomZBVd6KwJCTp/MeyKvRopSQ="; + vendorSha256 = "sha256-Y9wfeAX0jt3KrpRa5kJi8V8WN/hp4jTcPCbvy0RDGRk="; ldflags = [ "-s" diff --git a/pkgs/development/tools/go-swag/default.nix b/pkgs/development/tools/go-swag/default.nix index 49ffef19f779a..0417f8d567def 100644 --- a/pkgs/development/tools/go-swag/default.nix +++ b/pkgs/development/tools/go-swag/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "go-swag"; - version = "1.8.8"; + version = "1.8.9"; src = fetchFromGitHub { owner = "swaggo"; repo = "swag"; rev = "v${version}"; - sha256 = "sha256-xERuD15NEmBqosNAUmWEGqWVXc9jLA9HrbZrqmzhLFA="; + sha256 = "sha256-8UnDrWZ0gQlhPQLDqA5DLBBeHqQFlNxK7+y4qlUk/fI="; }; vendorSha256 = "sha256-iu4rSgB7Gu5n1Sgu0jU9QwdwvuZ5rAqysvKuBnJd2jQ="; diff --git a/pkgs/development/tools/gojq/default.nix b/pkgs/development/tools/gojq/default.nix index b70801d0228e9..177d838ff0932 100644 --- a/pkgs/development/tools/gojq/default.nix +++ b/pkgs/development/tools/gojq/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gojq"; - version = "0.12.10"; + version = "0.12.11"; src = fetchFromGitHub { owner = "itchyny"; repo = pname; rev = "v${version}"; - sha256 = "sha256-JlxxfazVNJzQzG2p8L+5MoevSNNWf5mi14n3f/Q+MZU="; + sha256 = "sha256-xJx3ge+8cIGL1j5vnU4JhCcwmXIRhJ66PYnEG223Fbc="; }; vendorSha256 = "sha256-BnDtHqqU/kFJyeG1g4UZ51eSnUlbQ6eRKTFoz6kxl0s="; diff --git a/pkgs/development/tools/grpc-gateway/default.nix b/pkgs/development/tools/grpc-gateway/default.nix index 3870e87dcb453..54e6ccd471dcf 100644 --- a/pkgs/development/tools/grpc-gateway/default.nix +++ b/pkgs/development/tools/grpc-gateway/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "grpc-gateway"; - version = "2.14.0"; + version = "2.15.0"; src = fetchFromGitHub { owner = "grpc-ecosystem"; repo = "grpc-gateway"; rev = "v${version}"; - sha256 = "sha256-lnNdsDCpeSHtl2lC1IhUw11t3cnGF+37qSM7HDvKLls="; + sha256 = "sha256-NOcV3XrSFeb/LYzeZQ0M1l1l4TkC+fVqAXCDUTaMN3c="; }; - vendorSha256 = "sha256-dGdnDuRbwg8fU7uB5GaHEWa/zI3w06onqjturvooJQA="; + vendorSha256 = "sha256-zYKRWJ09SnE0Y9iahTyODas/04an8x9w+rsY0x4/NRM="; meta = with lib; { description = diff --git a/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix b/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix index e7ba49fa68dc0..48a473be169b3 100644 --- a/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix +++ b/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix @@ -1,6 +1,6 @@ { lib , stdenv -, supportedGhcVersions ? [ "90" ] +, supportedGhcVersions ? [ "92" ] , dynamic ? true , haskellPackages , haskell @@ -40,23 +40,21 @@ let "ln -s ${ tunedHls (getPackages version) }/bin/haskell-language-server $out/bin/${x}") (targets version); - pkg = tunedHls haskellPackages; -in stdenv.mkDerivation { +in assert supportedGhcVersions != []; stdenv.mkDerivation { pname = "haskell-language-server"; version = haskellPackages.haskell-language-server.version; buildCommand = '' mkdir -p $out/bin - ln -s ${pkg}/bin/haskell-language-server $out/bin/haskell-language-server - ln -s ${pkg}/bin/haskell-language-server-wrapper $out/bin/haskell-language-server-wrapper + ln -s ${tunedHls (getPackages (builtins.head supportedGhcVersions))}/bin/haskell-language-server-wrapper $out/bin/haskell-language-server-wrapper ${concatMapStringsSep "\n" makeSymlinks supportedGhcVersions} ''; meta = haskellPackages.haskell-language-server.meta // { maintainers = [ lib.maintainers.maralorn ]; longDescription = '' - This package provides haskell-language-server, haskell-language-server-wrapper, ${ + This package provides the executables ${ concatMapStringsSep ", " (x: concatStringsSep ", " (targets x)) supportedGhcVersions - }. + } and haskell-language-server-wrapper. You can choose for which ghc versions to install hls with pkgs.haskell-language-server.override { supportedGhcVersions = [ "90" "92" ]; }. ''; }; diff --git a/pkgs/development/tools/haskell/vaultenv/default.nix b/pkgs/development/tools/haskell/vaultenv/default.nix index 4f51c8238ce05..b0810d33b50aa 100644 --- a/pkgs/development/tools/haskell/vaultenv/default.nix +++ b/pkgs/development/tools/haskell/vaultenv/default.nix @@ -96,4 +96,8 @@ mkDerivation rec { description = "Runs processes with secrets from HashiCorp Vault"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ lnl7 manveru ]; + + # Does not compile on ghc92 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/pkgs/development/tools/jira-cli-go/default.nix b/pkgs/development/tools/jira-cli-go/default.nix index fe5d8cf9ea115..ee5371627d80f 100644 --- a/pkgs/development/tools/jira-cli-go/default.nix +++ b/pkgs/development/tools/jira-cli-go/default.nix @@ -1,14 +1,14 @@ -{ lib, buildGoModule, fetchFromGitHub, less, more, installShellFiles, testers, jira-cli-go }: +{ lib, buildGoModule, fetchFromGitHub, less, more, installShellFiles, testers, jira-cli-go, nix-update-script }: buildGoModule rec { pname = "jira-cli-go"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "ankitpokhrel"; repo = "jira-cli"; rev = "v${version}"; - sha256 = "sha256-UpDaKg6TA1qCkbzF7BARtj+tAyuCCGAyqOdItZU64Ls="; + hash = "sha256-ruFSqD/QLIK69hx9lNulWjyXVJzGACmghAU4fFEgEJo="; }; vendorSha256 = "sha256-SpUggA9u8OGV2zF3EQ0CB8M6jpiVQi957UGaN+foEuk="; @@ -22,10 +22,15 @@ buildGoModule rec { checkInputs = [ less more ]; # Tests expect a pager in $PATH - passthru.tests.version = testers.testVersion { - package = jira-cli-go; - command = "jira version"; - inherit version; + passthru = { + tests.version = testers.testVersion { + package = jira-cli-go; + command = "jira version"; + inherit version; + }; + updateScript = nix-update-script { + attrPath = pname; + }; }; nativeBuildInputs = [ installShellFiles ]; @@ -41,6 +46,7 @@ buildGoModule rec { meta = with lib; { description = "Feature-rich interactive Jira command line"; homepage = "https://github.com/ankitpokhrel/jira-cli"; + changelog = "https://github.com/ankitpokhrel/jira-cli/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ bryanasdev000 anthonyroussel ]; }; diff --git a/pkgs/development/tools/jql/default.nix b/pkgs/development/tools/jql/default.nix index d7d65a4eda2c4..071f944a82f3b 100644 --- a/pkgs/development/tools/jql/default.nix +++ b/pkgs/development/tools/jql/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "jql"; - version = "5.1.3"; + version = "5.1.4"; src = fetchFromGitHub { owner = "yamafaktory"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xCtTa2CLLhdflcjjqxiOgRRuxlIHhcHo8gsdLMVuxvQ="; + sha256 = "sha256-D6Y3I5UPChdLlTZ49iToQpE8CrHh3VjWV6PI7fRhU/A="; }; - cargoSha256 = "sha256-yB9PemmX69bDkLTasroX3tTNzd13o7mu/fdSptsEMgM="; + cargoSha256 = "sha256-GqfQD8NK/HYODEGUmfo+MMVsWg2CabZFLfBTp4UXV2Q="; meta = with lib; { description = "A JSON Query Language CLI tool built with Rust"; diff --git a/pkgs/development/tools/karate/default.nix b/pkgs/development/tools/karate/default.nix index cda508c9df362..a374a4590fa57 100644 --- a/pkgs/development/tools/karate/default.nix +++ b/pkgs/development/tools/karate/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "karate"; - version = "1.3.0"; + version = "1.3.1"; src = fetchurl { url = "https://github.com/karatelabs/karate/releases/download/v${version}/karate-${version}.jar"; - sha256 = "sha256-uQHE8Mf70t7gtALdxO1tltUkwEKx0emWWliZEzwGW+Q="; + sha256 = "sha256-d0MIiMxENBPFM0Kv8vhtn/je1i650Z7+6PoV6ZZCsFY="; }; dontUnpack = true; diff --git a/pkgs/development/tools/ktlint/default.nix b/pkgs/development/tools/ktlint/default.nix index 9246fb9b8a08f..e80e4c8b4d441 100644 --- a/pkgs/development/tools/ktlint/default.nix +++ b/pkgs/development/tools/ktlint/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ktlint"; - version = "0.47.1"; + version = "0.48.0"; src = fetchurl { url = "https://github.com/pinterest/ktlint/releases/download/${version}/ktlint"; - sha256 = "sha256-ozOtAXI2mlzZc66oPgLotpjAai2qxvMpJdoDBJqj3Oc="; + sha256 = "0sdmfdmxgks9bbzg8nn1gdx55g7qiwpdxkx6p9lwa71mdfc14r2z"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/misc/cvise/default.nix b/pkgs/development/tools/misc/cvise/default.nix index ae0846f479cad..3dc84ad5991d1 100644 --- a/pkgs/development/tools/misc/cvise/default.nix +++ b/pkgs/development/tools/misc/cvise/default.nix @@ -16,14 +16,14 @@ buildPythonApplication rec { pname = "cvise"; - version = "2.6.0"; + version = "2.7.0"; format = "other"; src = fetchFromGitHub { owner = "marxin"; repo = "cvise"; rev = "refs/tags/v${version}"; - sha256 = "sha256-yREdWrGiH8Bb2bIxvlg4okGbkIM5XqC039Fj0rrsJos="; + sha256 = "sha256-j4s1xH0vO+/NNafQf1Jei7fgebSQ53WJKA+kYxuG2zQ="; }; patches = [ diff --git a/pkgs/development/tools/misc/highlight-assertions/default.nix b/pkgs/development/tools/misc/highlight-assertions/default.nix new file mode 100644 index 0000000000000..8d2aabe4bf5c6 --- /dev/null +++ b/pkgs/development/tools/misc/highlight-assertions/default.nix @@ -0,0 +1,25 @@ +{ lib, rustPlatform, fetchFromGitHub }: + +rustPlatform.buildRustPackage rec { + pname = "highlight-assertions"; + version = "unstable-2022-11-24"; + + src = fetchFromGitHub { + owner = "thehamsta"; + repo = pname; + rev = "c738a51513285ded4fc16d68afcdb77761543f92"; + sha256 = "sha256-vYXr0xFwRUwSEP++834A/4M1QB14Wx+qWwB9PUtn3uA="; + }; + + cargoSha256 = "sha256-sezjd7tmVVDoRsrsTK2zKjHmrBcAQDHyHd/dR1q1za0="; + + # requires nightly features + RUSTC_BOOTSTRAP = 1; + + meta = with lib; { + description = "A tool for unit testing tree sitter highlights for nvim-treesitter"; + homepage = "https://github.com/thehamsta/highlight-assertions"; + license = licenses.asl20; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/development/tools/misc/netcoredbg/default.nix b/pkgs/development/tools/misc/netcoredbg/default.nix index d736e4a1d29ee..6ea15d74d8cf2 100644 --- a/pkgs/development/tools/misc/netcoredbg/default.nix +++ b/pkgs/development/tools/misc/netcoredbg/default.nix @@ -64,6 +64,10 @@ stdenvNoCC.mkDerivation { ln -s $out/share/netcoredbg/netcoredbg $out/bin/netcoredbg ''; + passthru = { + inherit (managed) fetch-deps; + }; + meta = with lib; { description = "Managed code debugger with MI interface for CoreCLR"; homepage = "https://github.com/Samsung/netcoredbg"; diff --git a/pkgs/development/tools/misc/netcoredbg/deps.nix b/pkgs/development/tools/misc/netcoredbg/deps.nix index 8285009fc20ff..8d311ab7f8bd6 100644 --- a/pkgs/development/tools/misc/netcoredbg/deps.nix +++ b/pkgs/development/tools/misc/netcoredbg/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Microsoft.CodeAnalysis.Analyzers"; version = "1.1.0"; sha256 = "08r667hj2259wbim1p3al5qxkshydykmb7nd9ygbjlg4mmydkapc"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Common"; version = "2.3.0"; sha256 = "1p29v4499qpyh7k7fv1li2y3c688zg95ic8gq9if1nqmjciz5w7p"; }) @@ -8,6 +11,22 @@ (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) (fetchNuGet { pname = "NETStandard.Library"; version = "2.0.3"; sha256 = "1fn9fxppfcg4jgypp2pmrpr6awl3qz1xmnri0cygpkwvyx27df1y"; }) + (fetchNuGet { pname = "runtime.any.System.Collections"; version = "4.3.0"; sha256 = "0bv5qgm6vr47ynxqbnkc7i797fdi8gbjjxii173syrx14nmrkwg0"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "1wl76vk12zhdh66vmagni66h5xbhgqq7zkdpgw21jhxhvlbcl8pk"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "00j6nv2xgmd3bi347k00m7wr542wjlig53rmj28pmw7ddcn97jbn"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization"; version = "4.3.0"; sha256 = "1daqf33hssad94lamzg01y49xwndy2q97i2lrb7mgn28656qia1x"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization.Calendars"; version = "4.3.0"; sha256 = "1ghhhk5psqxcg6w88sxkqrc35bxcz27zbqm2y5p5298pv3v7g201"; }) + (fetchNuGet { pname = "runtime.any.System.IO"; version = "4.3.0"; sha256 = "0l8xz8zn46w4d10bcn3l4yyn4vhb3lrj2zw8llvz7jk14k4zps5x"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection"; version = "4.3.0"; sha256 = "02c9h3y35pylc0zfq3wcsvc5nqci95nrkq0mszifc0sjx7xrzkly"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Extensions"; version = "4.3.0"; sha256 = "0zyri97dfc5vyaz9ba65hjj1zbcrzaffhsdlpxc9bh09wy22fq33"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Primitives"; version = "4.3.0"; sha256 = "0x1mm8c6iy8rlxm8w9vqw7gb7s1ljadrn049fmf70cyh42vdfhrf"; }) + (fetchNuGet { pname = "runtime.any.System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "03kickal0iiby82wa5flar18kyv82s9s6d4xhk5h4bi5kfcyfjzl"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime"; version = "4.3.0"; sha256 = "1cqh1sv3h5j7ixyb7axxbdkqx6cxy00p4np4j91kpm492rf4s25b"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.Handles"; version = "4.3.0"; sha256 = "0bh5bi25nk9w9xi8z23ws45q5yia6k7dg3i4axhfqlnj145l011x"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.InteropServices"; version = "4.3.0"; sha256 = "0c3g3g3jmhlhw4klrc86ka9fjbl7i59ds1fadsb2l8nqf8z3kb19"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding"; version = "4.3.0"; sha256 = "0aqqi1v4wx51h51mk956y783wzags13wa7mgqyclacmsmpv02ps3"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "0lqhgqi0i8194ryqq6v2gqx0fb86db2gqknbm0aq31wb378j7ip8"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Tasks"; version = "4.3.0"; sha256 = "03mnvkhskbzxddz4hm113zsch1jyzh2cs450dk3rgfjp8crlw1va"; }) (fetchNuGet { pname = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) (fetchNuGet { pname = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) (fetchNuGet { pname = "runtime.fedora.24-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0c2p354hjx58xhhz7wv6div8xpi90sc6ibdm40qin21bvi7ymcaa"; }) @@ -24,6 +43,11 @@ (fetchNuGet { pname = "runtime.ubuntu.14.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "160p68l2c7cqmyqjwxydcvgw7lvl1cr0znkw8fp24d1by9mqc8p3"; }) (fetchNuGet { pname = "runtime.ubuntu.16.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "15zrc8fgd8zx28hdghcj5f5i34wf3l6bq5177075m2bc2j34jrqy"; }) (fetchNuGet { pname = "runtime.ubuntu.16.10-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "1p4dgxax6p7rlgj4q73k73rslcnz4wdcv8q2flg1s8ygwcm58ld5"; }) + (fetchNuGet { pname = "runtime.unix.System.Console"; version = "4.3.0"; sha256 = "1pfpkvc6x2if8zbdzg9rnc5fx51yllprl8zkm5npni2k50lisy80"; }) + (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "1lps7fbnw34bnh3lm31gs5c0g0dh7548wfmb8zz62v0zqz71msj5"; }) + (fetchNuGet { pname = "runtime.unix.System.IO.FileSystem"; version = "4.3.0"; sha256 = "14nbkhvs7sji5r1saj2x8daz82rnf9kx28d3v2qss34qbr32dzix"; }) + (fetchNuGet { pname = "runtime.unix.System.Private.Uri"; version = "4.3.0"; sha256 = "1jx02q6kiwlvfksq1q9qr17fj78y5v6mwsszav4qcz9z25d5g6vk"; }) + (fetchNuGet { pname = "runtime.unix.System.Runtime.Extensions"; version = "4.3.0"; sha256 = "0pnxxmm8whx38dp6yvwgmh22smknxmqs5n513fc7m4wxvs1bvi4p"; }) (fetchNuGet { pname = "System.AppContext"; version = "4.3.0"; sha256 = "1649qvy3dar900z3g817h17nl8jp4ka5vcfmsr05kh0fshn7j3ya"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.3.0"; sha256 = "0fgns20ispwrfqll4q1zc1waqcmylb3zc50ys9x8zlwxh9pmd9jy"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) @@ -45,6 +69,7 @@ (fetchNuGet { pname = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.3.0"; sha256 = "191p63zy5rpqx7dnrb3h7prvgixmk168fhvvkkvhlazncf8r3nc2"; }) + (fetchNuGet { pname = "System.Private.Uri"; version = "4.3.0"; sha256 = "04r1lkdnsznin0fj4ya1zikxiqr0h6r6a1ww2dsm60gqhdrf0mvx"; }) (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) (fetchNuGet { pname = "System.Reflection.Emit"; version = "4.3.0"; sha256 = "11f8y3qfysfcrscjpjym9msk7lsfxkk4fmz9qq95kn3jd0769f74"; }) (fetchNuGet { pname = "System.Reflection.Emit.ILGeneration"; version = "4.3.0"; sha256 = "0w1n67glpv8241vnpz1kl14sy7zlnw414aqwj4hcx5nd86f6994q"; }) diff --git a/pkgs/development/tools/misc/saleae-logic-2/default.nix b/pkgs/development/tools/misc/saleae-logic-2/default.nix index 2a75c9855e588..1c049eac7aa32 100644 --- a/pkgs/development/tools/misc/saleae-logic-2/default.nix +++ b/pkgs/development/tools/misc/saleae-logic-2/default.nix @@ -1,10 +1,10 @@ { lib, fetchurl, makeDesktopItem, appimageTools }: let name = "saleae-logic-2"; - version = "2.4.2"; + version = "2.4.3"; src = fetchurl { url = "https://downloads.saleae.com/logic2/Logic-${version}-master.AppImage"; - sha256 = "sha256-A0Gd/CDd1COWbBXa87eW+A8AKyQzubJ3qSpj/JnWeZk="; + hash = "sha256-xF87Q1K25/9pUYt660RY2RCIC6u2m2ArBQb2nWhiKvw="; }; desktopItem = makeDesktopItem { inherit name; diff --git a/pkgs/development/tools/ocaml/omake/default.nix b/pkgs/development/tools/ocaml/omake/default.nix index bcfd86a2d4dec..f6c7955c68633 100644 --- a/pkgs/development/tools/ocaml/omake/default.nix +++ b/pkgs/development/tools/ocaml/omake/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "omake"; - version = "0.10.3"; + version = "0.10.5"; src = fetchurl { url = "http://download.camlcity.org/download/${pname}-${version}.tar.gz"; - sha256 = "07bdg1h5i7qnlv9xq81ad5hfypl10hxm771h4rjyl5cn8plhfcgz"; + sha256 = "sha256-VOFq2KLBbmZCRgHzfpD7p0iyF8yU1tTbyvTiOcpm98Q="; }; buildInputs = [ ocaml ncurses ]; diff --git a/pkgs/development/tools/ocaml/opam2json/default.nix b/pkgs/development/tools/ocaml/opam2json/default.nix index 198a5f575eb46..a3ca535d3f86f 100644 --- a/pkgs/development/tools/ocaml/opam2json/default.nix +++ b/pkgs/development/tools/ocaml/opam2json/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, opam-installer, ocamlPackages }: stdenv.mkDerivation rec { pname = "opam2json"; - version = "0.2"; + version = "0.4"; src = fetchFromGitHub { owner = "tweag"; repo = pname; rev = "v${version}"; - sha256 = "fe8bm/V/4r2iNxgbitT2sXBqDHQ0GBSnSUSBg/1aXoI="; + sha256 = "sha256-5pXfbUfpVABtKbii6aaI2EdAZTjHJ2QntEf0QD2O5AM="; }; buildInputs = with ocamlPackages; [ yojson opam-file-format cmdliner ]; diff --git a/pkgs/development/tools/okteto/default.nix b/pkgs/development/tools/okteto/default.nix index e0313950ebc43..20cfeb8f6918f 100644 --- a/pkgs/development/tools/okteto/default.nix +++ b/pkgs/development/tools/okteto/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "okteto"; - version = "2.9.1"; + version = "2.10.2"; src = fetchFromGitHub { owner = "okteto"; repo = "okteto"; rev = version; - hash = "sha256-kdYuo+xtGvL+PGhDbW5jL3m0jsakxcZ1DE2i3KbmMQc="; + hash = "sha256-0xCT2lfGIhbUNOs1Gaz+I5y7wa9oDWBbS564k3zxigo="; }; - vendorHash = "sha256-/oR8R0/GC6cgCqXinCRH5x93qgRPeQmxHgZZGshrDr4="; + vendorHash = "sha256-Yi+4fGCHLH/kA4DuPI2uQ/27xhMd4cPFkTWlI6Bc13A="; postPatch = '' # Disable some tests that need file system & network access. diff --git a/pkgs/development/tools/omnisharp-roslyn/default.nix b/pkgs/development/tools/omnisharp-roslyn/default.nix index 88e7fa690db65..0fc9952b592c7 100644 --- a/pkgs/development/tools/omnisharp-roslyn/default.nix +++ b/pkgs/development/tools/omnisharp-roslyn/default.nix @@ -30,7 +30,7 @@ let finalPackage = buildDotnetModule rec { ]; dotnetInstallFlags = [ "--framework net6.0" ]; - dotnetBuildFlags = [ "--framework net6.0" ]; + dotnetBuildFlags = [ "--framework net6.0" "--no-self-contained" ]; dotnetFlags = [ # These flags are set by the cake build. "-property:PackageVersion=${version}" diff --git a/pkgs/development/tools/open-policy-agent/default.nix b/pkgs/development/tools/open-policy-agent/default.nix index fcf749a988d3f..f7f0eca56cadf 100644 --- a/pkgs/development/tools/open-policy-agent/default.nix +++ b/pkgs/development/tools/open-policy-agent/default.nix @@ -11,13 +11,13 @@ assert enableWasmEval && stdenv.isDarwin -> builtins.throw "building with wasm o buildGoModule rec { pname = "open-policy-agent"; - version = "0.47.3"; + version = "0.47.4"; src = fetchFromGitHub { owner = "open-policy-agent"; repo = "opa"; rev = "v${version}"; - sha256 = "sha256-c82v/4+HdBLNsJM1kO6A6rfywU4J7a3h5LW/T731vxw="; + sha256 = "sha256-EHDSil077g/K8XCWQ9Pry/oyh0Bs3ckS/5Co1z/+Yes="; }; vendorSha256 = null; diff --git a/pkgs/development/tools/operator-sdk/default.nix b/pkgs/development/tools/operator-sdk/default.nix index 117491d3bad77..b1d8e5065f28b 100644 --- a/pkgs/development/tools/operator-sdk/default.nix +++ b/pkgs/development/tools/operator-sdk/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "operator-sdk"; - version = "1.25.3"; + version = "1.26.0"; src = fetchFromGitHub { owner = "operator-framework"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-f+FbmkCdM5Ub/nbq5Z8HnZ1KexGV59U/zPLpOkfs200="; + hash = "sha256-hIJTdTZ24+VwF1M/RvKcnQRzZga0nsjlTTUFYxZn0lo="; }; vendorHash = "sha256-1Vz+SIrNULajDqzZt53+o9wv1zLPBvKrO28BTqS4VbM="; diff --git a/pkgs/development/tools/prospector/default.nix b/pkgs/development/tools/prospector/default.nix index d2855861dc8fc..95b5512c6fca0 100644 --- a/pkgs/development/tools/prospector/default.nix +++ b/pkgs/development/tools/prospector/default.nix @@ -7,29 +7,34 @@ let setoptconf-tmp = python3.pkgs.callPackage ./setoptconf.nix { }; in -with python3.pkgs; - -buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "prospector"; - version = "1.7.7"; + version = "1.8.3"; format = "pyproject"; - disabled = pythonOlder "3.7"; - src = fetchFromGitHub { owner = "PyCQA"; repo = pname; - rev = version; - hash = "sha256-sbPZmVeJtNphtjuZEfKcUgty9bJ3E/2Ya9RuX3u/XEs="; + rev = "refs/tags/v${version}"; + hash = "sha256-R3Sc4Qx6bht+XJhNj+fy32akzDOgSDF5LP3WE1qEyms="; }; - nativeBuildInputs = [ + pythonRelaxDeps = [ + "pyflakes" + "pep8-naming" + "flake8" + ]; + + nativeBuildInputs = with python3.pkgs; [ poetry-core + pythonRelaxDepsHook ]; - propagatedBuildInputs = [ + propagatedBuildInputs = with python3.pkgs; [ bandit dodgy + flake8 + gitpython mccabe mypy pep8-naming @@ -50,25 +55,24 @@ buildPythonApplication rec { vulture ]; - checkInputs = [ + checkInputs = with python3.pkgs; [ pytestCheckHook ]; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'requirements-detector = "^0.7"' 'requirements-detector = "*"' \ - --replace 'pep8-naming = ">=0.3.3,<=0.10.0"' 'pep8-naming = "*"' \ - --replace 'mccabe = "^0.6.0"' 'mccabe = "*"' \ - --replace 'pycodestyle = ">=2.6.0,<2.9.0"' 'pycodestyle = "*"' - ''; - pythonImportsCheck = [ "prospector" ]; + disabledTestPaths = [ + # distutils.errors.DistutilsArgError: no commands supplied + "tests/tools/pyroma/test_pyroma_tool.py" + ]; + + meta = with lib; { description = "Tool to analyse Python code and output information about errors, potential problems, convention violations and complexity"; homepage = "https://github.com/PyCQA/prospector"; + changelog = "https://github.com/PyCQA/prospector/blob/v${version}/CHANGELOG.rst"; license = licenses.gpl2Plus; maintainers = with maintainers; [ kamadorueda ]; }; diff --git a/pkgs/development/tools/purescript/spago/default.nix b/pkgs/development/tools/purescript/spago/default.nix index 51516ed5b2564..8006147e2dd1d 100644 --- a/pkgs/development/tools/purescript/spago/default.nix +++ b/pkgs/development/tools/purescript/spago/default.nix @@ -1,5 +1,4 @@ { haskell -, haskellPackages , lib # The following are only needed for the passthru.tests: @@ -12,14 +11,16 @@ let spago = - haskell.lib.compose.justStaticExecutables - (haskell.lib.compose.overrideCabal (oldAttrs: { - maintainers = (oldAttrs.maintainers or []) ++ [ - lib.maintainers.cdepillabout - ]; - changelog = - "https://github.com/purescript/spago/releases/tag/${oldAttrs.version}"; - }) haskellPackages.spago); + lib.pipe + haskell.packages.ghc90.spago + [ haskell.lib.compose.justStaticExecutables + (haskell.lib.compose.overrideCabal (oldAttrs: { + maintainers = (oldAttrs.maintainers or []) ++ [ lib.maintainers.cdepillabout ]; + changelog = "https://github.com/purescript/spago/releases/tag/${oldAttrs.version}"; + })) + haskell.lib.compose.unmarkBroken + haskell.lib.compose.doDistribute + ]; in spago.overrideAttrs (oldAttrs: { @@ -58,4 +59,3 @@ spago.overrideAttrs (oldAttrs: { ''; }; }) - diff --git a/pkgs/development/tools/react-native-debugger/default.nix b/pkgs/development/tools/react-native-debugger/default.nix index 967c5541991c2..6909c59a92b39 100644 --- a/pkgs/development/tools/react-native-debugger/default.nix +++ b/pkgs/development/tools/react-native-debugger/default.nix @@ -1,5 +1,31 @@ -{ lib, stdenv, fetchurl, unzip, cairo, xorg, gdk-pixbuf, fontconfig, pango, gnome, atk, at-spi2-atk, at-spi2-core -, gtk3, glib, freetype, dbus, nss, nspr, alsa-lib, cups, expat, udev, makeDesktopItem +{ lib +, stdenv +, fetchurl +, unzip +, cairo +, xorg +, gdk-pixbuf +, fontconfig +, pango +, gnome +, atk +, at-spi2-atk +, at-spi2-core +, gtk3 +, glib +, freetype +, dbus +, nss +, nspr +, alsa-lib +, cups +, expat +, udev +, makeDesktopItem +, libdrm +, libxkbcommon +, mesa +, makeWrapper }: let @@ -22,6 +48,9 @@ let udev at-spi2-atk at-spi2-core + libdrm + libxkbcommon + mesa xorg.libX11 xorg.libXcursor @@ -36,7 +65,8 @@ let xorg.libXrender xorg.libXScrnSaver ]; -in stdenv.mkDerivation rec { +in +stdenv.mkDerivation rec { pname = "react-native-debugger"; version = "0.13.0"; src = fetchurl { @@ -44,7 +74,7 @@ in stdenv.mkDerivation rec { sha256 = "sha256-/uVXMVrVS7n4/mqz6IlKkk63hy67fn9KRjZ1wP5MHB0="; }; - nativeBuildInputs = [ unzip ]; + nativeBuildInputs = [ makeWrapper unzip ]; buildCommand = '' shopt -s extglob mkdir -p $out @@ -59,6 +89,9 @@ in stdenv.mkDerivation rec { --set-rpath ${rpath}:$out/lib \ $out/share/react-native-debugger + wrapProgram $out/share/react-native-debugger \ + --add-flags --no-sandbox + ln -s $out/share/react-native-debugger $out/bin/react-native-debugger install -Dm644 "${desktopItem}/share/applications/"* \ diff --git a/pkgs/development/tools/ruff/default.nix b/pkgs/development/tools/ruff/default.nix index 9bee8f7b5314e..4da5922a46536 100644 --- a/pkgs/development/tools/ruff/default.nix +++ b/pkgs/development/tools/ruff/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "ruff"; - version = "0.0.186"; + version = "0.0.193"; src = fetchFromGitHub { owner = "charliermarsh"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mCX/s4DsnGoQgeP1oZmR8motTdKz7Gj2FWrvBkgM7WA="; + sha256 = "sha256-OsK5RUaUTuIvB5DZAbzazbeCqHTZbA2v+xIZHWsls8c="; }; - cargoSha256 = "sha256-lvttZWSdqff8eRXEe6/GPelE1ZJheozN2dEBURapY9w="; + cargoSha256 = "sha256-GyINYYNcYuTRPrM9W0/09xqFxe5CezBIsprUiEgF2MA="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.CoreServices diff --git a/pkgs/development/tools/rust/cargo-edit/default.nix b/pkgs/development/tools/rust/cargo-edit/default.nix index 11886b06d257f..f5ccafc4815de 100644 --- a/pkgs/development/tools/rust/cargo-edit/default.nix +++ b/pkgs/development/tools/rust/cargo-edit/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-edit"; - version = "0.11.6"; + version = "0.11.7"; src = fetchFromGitHub { owner = "killercup"; repo = pname; rev = "v${version}"; - hash = "sha256-EGClr2HQ11bX6WTvu9ZxPo4hA0Q5Sl9t0Gw8/SltxDI="; + hash = "sha256-u0t/Zh427ZWN1wJ1LISEWa/2r0gAnpWUf8C8eLGA7wc="; }; - cargoSha256 = "sha256-Ph6W2RyNjVfnkon4YyAi4VvQWt/McKelUzlRD15Yysk="; + cargoSha256 = "sha256-hQvxcS3DXY4SZiEKQSST5GQ40BMNDKSkwi3AqQstJvc="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-expand/default.nix b/pkgs/development/tools/rust/cargo-expand/default.nix index 07fb95f8729cd..d087f0b856cb4 100644 --- a/pkgs/development/tools/rust/cargo-expand/default.nix +++ b/pkgs/development/tools/rust/cargo-expand/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-expand"; - version = "1.0.35"; + version = "1.0.36"; src = fetchFromGitHub { owner = "dtolnay"; repo = pname; rev = version; - sha256 = "sha256-hJb4FLL3+AMNLL05eQc7Mkhp0KEGxmHg8/ETDoZiLV4="; + sha256 = "sha256-8h20Cnu72ychSdtKlAz6US0wXMIcn1ZUWMgF6a0K4uI="; }; - cargoSha256 = "sha256-wKVlmO2/ugAb7vUSIGMz0WGnjEVEsm459DV9FaM28Mk="; + cargoSha256 = "sha256-xIVoEIyp8NygfNu/aola1pM6KokjrPQ5v55eBc7zPZc="; buildInputs = lib.optional stdenv.isDarwin libiconv; diff --git a/pkgs/development/tools/rust/cargo-mommy/default.nix b/pkgs/development/tools/rust/cargo-mommy/default.nix new file mode 100644 index 0000000000000..b05282f4f779c --- /dev/null +++ b/pkgs/development/tools/rust/cargo-mommy/default.nix @@ -0,0 +1,20 @@ +{ lib, rustPlatform, fetchCrate }: + +rustPlatform.buildRustPackage rec { + pname = "cargo-mommy"; + version = "0.1.1"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-p1SAYUQu1HpYJ6TbLJ3lfA9VlKHvB7z5yiFXmTQOCXA="; + }; + + cargoSha256 = "sha256-5RidY+6EF23UNzz1suSdA4LL59FalipaJ+ISSsmiCXM="; + + meta = with lib; { + description = "Cargo wrapper that encourages you after running commands"; + homepage = "https://github.com/Gankra/cargo-mommy"; + license = with licenses; [ mit asl20 ]; + maintainers = with maintainers; [ GoldsteinE ]; + }; +} diff --git a/pkgs/development/tools/rust/cargo-pgx/default.nix b/pkgs/development/tools/rust/cargo-pgx/default.nix index 4ebbb797230e9..004b6ed27543e 100644 --- a/pkgs/development/tools/rust/cargo-pgx/default.nix +++ b/pkgs/development/tools/rust/cargo-pgx/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-pgx"; - version = "0.6.0"; + version = "0.6.1"; src = fetchCrate { inherit version pname; - sha256 = "sha256-CXOInyT0fY17e4iuGhUpR9EPd2M8jauR5TKpPlhTJoQ="; + sha256 = "sha256-O4eHVbJBudybsPab+zr2eXnfheREMqLAHAKm2GDbfrs="; }; - cargoSha256 = "sha256-RtPFFIuurSPMhGLcGLOu0em1biimVkTaAKP5EUPtQ9U="; + cargoSha256 = "sha256-MucGrA3qXgJOcT2LMNmoNOhQi8QA3LuqgZEHKycLCCo="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-semver-checks/default.nix b/pkgs/development/tools/rust/cargo-semver-checks/default.nix index 19c487368e785..ab86d41d7c53b 100644 --- a/pkgs/development/tools/rust/cargo-semver-checks/default.nix +++ b/pkgs/development/tools/rust/cargo-semver-checks/default.nix @@ -5,38 +5,38 @@ , libgit2 , openssl , stdenv -, Security +, darwin }: rustPlatform.buildRustPackage rec { pname = "cargo-semver-checks"; - version = "0.12.0"; + version = "0.14.0"; src = fetchFromGitHub { owner = "obi1kenobi"; - repo = "cargo-semver-check"; + repo = pname; rev = "v${version}"; - sha256 = "sha256-gB8W/u/Yb/rMMB+654N3Mj4QbTMWGK6cgQKM0lld/10="; + sha256 = "sha256-upGVWCK3gEPH6BZ7W410AnQPIWOCeD4sawQqPLRowfw="; }; - cargoSha256 = "sha256-ML4cTNtCvaLFkt1QdA34QvAGhrFTO90xw7fsUD2weqQ="; + cargoSha256 = "sha256-PYZe7OO/cevictnWGc+NHVpJXctU2XyejF8jPjSNp3M="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ libgit2 openssl ] ++ lib.optionals stdenv.isDarwin [ - Security + darwin.apple_sdk.frameworks.Security ]; checkFlags = [ # requires nightly version of cargo-rustdoc - "--skip=adapter::tests" + "--skip=dump::tests" "--skip=query::tests" ]; meta = with lib; { description = "A tool to scan your Rust crate for semver violations"; - homepage = "https://github.com/obi1kenobi/cargo-semver-check"; - license = licenses.asl20; + homepage = "https://github.com/obi1kenobi/cargo-semver-checks"; + license = with licenses; [ mit /* or */ asl20 ]; maintainers = with maintainers; [ figsoda matthiasbeyer ]; }; } diff --git a/pkgs/development/tools/rust/cargo-tally/default.nix b/pkgs/development/tools/rust/cargo-tally/default.nix index 4129b30035bd7..8fa00e11ef767 100644 --- a/pkgs/development/tools/rust/cargo-tally/default.nix +++ b/pkgs/development/tools/rust/cargo-tally/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-tally"; - version = "1.0.18"; + version = "1.0.19"; src = fetchCrate { inherit pname version; - sha256 = "sha256-BlWPdZb85XaTGV6ZE3XRVKHJyXimfrezhRyqJVmCFMY="; + sha256 = "sha256-TlHb974Dtmz5qW+4L3BE6GQ3SbkwtIrZxE6FpJrgNdY="; }; - cargoSha256 = "sha256-1qtlsItLP8MdxebgktzTr3R4Kq+PBIAiHGaikbQ796E="; + cargoSha256 = "sha256-np1rln9tD+J4s410/Pv4/eKAxyzK8qtLoON86JR1T94="; buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk_11_0.frameworks; [ DiskArbitration diff --git a/pkgs/development/tools/rust/cargo-tauri/default.nix b/pkgs/development/tools/rust/cargo-tauri/default.nix index 45e4a2b2e7848..9c863e09efdd9 100644 --- a/pkgs/development/tools/rust/cargo-tauri/default.nix +++ b/pkgs/development/tools/rust/cargo-tauri/default.nix @@ -11,20 +11,20 @@ rustPlatform.buildRustPackage rec { pname = "tauri"; - version = "1.2.2"; + version = "1.2.3"; src = fetchFromGitHub { owner = "tauri-apps"; repo = pname; rev = "tauri-v${version}"; - sha256 = "sha256-RBaIF9vWQwQAdqN3p3JS1WO6u3IMxi8CuCkrwQbd2gI="; + sha256 = "sha256-4v0ZlFBVBB+0xWbTRncVwELaZWLKyCmIceTfseXvS8s="; }; # Manually specify the sourceRoot since this crate depends on other crates in the workspace. Relevant info at # https://discourse.nixos.org/t/difficulty-using-buildrustpackage-with-a-src-containing-multiple-cargo-workspaces/10202 sourceRoot = "source/tooling/cli"; - cargoSha256 = "sha256-8sdCVOtPwIjW2x1yh1B0oybVi2kz3LQoK3OcaJvUsxQ="; + cargoSha256 = "sha256-Hp6+T2CN0CsXaGnCVqAYaOjZNDkmI+MXDfHIgbU1S0g="; buildInputs = [ glibc libsoup cairo gtk3 webkitgtk ]; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/rust-analyzer/default.nix b/pkgs/development/tools/rust/rust-analyzer/default.nix index 0cd55e1f820b1..32f29c5ef016f 100644 --- a/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -12,14 +12,14 @@ rustPlatform.buildRustPackage rec { pname = "rust-analyzer-unwrapped"; - version = "2022-12-12"; - cargoSha256 = "sha256-YTakd4qRwXUoxzFWXCj8l9nA3wjJtfVmKbhX9XlaEbE="; + version = "2022-12-19"; + cargoSha256 = "sha256-/Ep/YELl1eA6HzZ/a7pi2a1XSlYB36VZJJPLZKnx4J0="; src = fetchFromGitHub { owner = "rust-lang"; repo = "rust-analyzer"; rev = version; - sha256 = "sha256-QLKX/JhK+jRE61teK+Cr4f2KuAzgYuawStxOgJymqRg="; + sha256 = "sha256-sGZNmkUwHt7FmuwDyYjnTAyo8ZMkH9iOdCOyU+2Vcos="; }; cargoBuildFlags = [ "--bin" "rust-analyzer" "--bin" "rust-analyzer-proc-macro-srv" ]; diff --git a/pkgs/development/tools/rust/typeshare/default.nix b/pkgs/development/tools/rust/typeshare/default.nix index 2dc405b85134e..6e96bf72bbad2 100644 --- a/pkgs/development/tools/rust/typeshare/default.nix +++ b/pkgs/development/tools/rust/typeshare/default.nix @@ -2,22 +2,18 @@ rustPlatform.buildRustPackage rec { pname = "typeshare"; - version = "1.0.0"; + version = "1.0.1"; src = fetchCrate { inherit version; pname = "typeshare-cli"; - sha256 = "sha256-KDmE5f9B2lNVbjdF8d81NTJIwpvPhsoLMA8w7iYIIl8="; + sha256 = "sha256-SbTI7170Oc1e09dv4TvUwByG3qkyAL5YXZ96NzI0FSI="; }; - cargoSha256 = "sha256-b983tSue9WHkPrcIhp5QSjwj+lESURUYueebjXUWMJY="; + cargoSha256 = "sha256-5EhXw2WcRJqCbdMvOtich9EYQqi0uwCH1a1XXIo8aAo="; buildFeatures = [ "go" ]; - postInstall = '' - ln -s $out/bin/typeshare{-cli,} - ''; - meta = with lib; { description = "Command Line Tool for generating language files with typeshare"; homepage = "https://github.com/1password/typeshare"; diff --git a/pkgs/development/tools/sq/default.nix b/pkgs/development/tools/sq/default.nix index 4e96594fcb3c4..602358fe99ddf 100644 --- a/pkgs/development/tools/sq/default.nix +++ b/pkgs/development/tools/sq/default.nix @@ -1,18 +1,18 @@ { lib, buildGoModule, fetchFromGitHub, installShellFiles, testers, sq }: buildGoModule rec { pname = "sq"; - version = "0.15.11"; + version = "0.16.0"; src = fetchFromGitHub { owner = "neilotoole"; repo = pname; rev = "v${version}"; - sha256 = "sha256-sYaQb7MFeTgJ/WPuCuMYjLcgmO/FhMGgOvY1HfGh2ag="; + sha256 = "sha256-0BpQDlLWERm8UOcmxAVH5aWBGrcdV64YB7S+3etOtU0="; }; nativeBuildInputs = [ installShellFiles ]; - vendorSha256 = "sha256-P1NxcjRA0g9NK2EaEG5E9G2TywTp5uvHesQE7+EG4ag="; + vendorSha256 = "sha256-tzq22S3fuaxOIoXL1mMPV90El8cUwzm2XSaiDHIuc4g="; # Some tests violates sandbox constraints. doCheck = false; diff --git a/pkgs/development/tools/supabase-cli/default.nix b/pkgs/development/tools/supabase-cli/default.nix index 39ec1d018d37d..d7c6b3ec45cf6 100644 --- a/pkgs/development/tools/supabase-cli/default.nix +++ b/pkgs/development/tools/supabase-cli/default.nix @@ -2,17 +2,18 @@ , buildGoModule , fetchFromGitHub , installShellFiles +, nix-update-script }: buildGoModule rec { pname = "supabase-cli"; - version = "1.27.0"; + version = "1.27.4"; src = fetchFromGitHub { owner = "supabase"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-gAfgqOeJ1cQ5Igxcut0FXkzhK38Q/mUTXfFaZE0dNCs="; + sha256 = "sha256-pF94rGVWhW0KIoSHijkqsoMkzrNd21ncGU+PKqffkZU="; }; vendorSha256 = "sha256-RO9dZP236Kt8SSpZFF7KRksrjgwiEkPxE5DIMUK69Kw="; @@ -33,6 +34,10 @@ buildGoModule rec { --zsh <($out/bin/supabase completion zsh) ''; + passthru.updateScript = nix-update-script { + attrPath = "supabase-cli"; + }; + meta = with lib; { description = "A CLI for interacting with supabase"; homepage = "https://github.com/supabase/cli"; diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index 35d1aff01ded4..406f9c2a45633 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "flyctl"; - version = "0.0.440"; + version = "0.0.441"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - sha256 = "sha256-pqly/5QEwKTp9wdh+Tq4KhOFmSD1TLodamo64e13o/s="; + sha256 = "sha256-T69OGS9w0furVOABvctzCxSgUJpwppWRFCmOlWzgagE="; }; vendorSha256 = "sha256-yVR3pUsveZf4052hr6aO4fnvEOQyHdm3N7khcobcoyE="; diff --git a/pkgs/games/BeatSaberModManager/default.nix b/pkgs/games/BeatSaberModManager/default.nix index 8d607268dc642..ceef75f4585e1 100644 --- a/pkgs/games/BeatSaberModManager/default.nix +++ b/pkgs/games/BeatSaberModManager/default.nix @@ -34,7 +34,7 @@ buildDotnetModule rec { patches = [ (substituteAll { src = ./add-runtime-identifier.patch; - runtimeIdentifier = dotnet-sdk.passthru.systemToDotnetRid targetPlatform.system; + runtimeIdentifier = dotnetCorePackages.systemToDotnetRid targetPlatform.system; }) ]; diff --git a/pkgs/games/factorio/versions.json b/pkgs/games/factorio/versions.json index 9897495efecf2..629f184068464 100644 --- a/pkgs/games/factorio/versions.json +++ b/pkgs/games/factorio/versions.json @@ -2,20 +2,20 @@ "x86_64-linux": { "alpha": { "experimental": { - "name": "factorio_alpha_x64-1.1.72.tar.xz", + "name": "factorio_alpha_x64-1.1.74.tar.xz", "needsAuth": true, - "sha256": "0hphx3jpmwwpyxyw4v4s7awy6vmcxi067sfl5j1ym5rdgsvr6n63", + "sha256": "0ygnqlw92gz2s2c4pdhb11lvh86d7byhw5l3qw1fjsx0xv3qnxrs", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/alpha/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/alpha/linux64", + "version": "1.1.74" }, "stable": { - "name": "factorio_alpha_x64-1.1.72.tar.xz", + "name": "factorio_alpha_x64-1.1.74.tar.xz", "needsAuth": true, - "sha256": "0hphx3jpmwwpyxyw4v4s7awy6vmcxi067sfl5j1ym5rdgsvr6n63", + "sha256": "0ygnqlw92gz2s2c4pdhb11lvh86d7byhw5l3qw1fjsx0xv3qnxrs", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/alpha/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/alpha/linux64", + "version": "1.1.74" } }, "demo": { @@ -38,20 +38,20 @@ }, "headless": { "experimental": { - "name": "factorio_headless_x64-1.1.72.tar.xz", + "name": "factorio_headless_x64-1.1.74.tar.xz", "needsAuth": false, - "sha256": "1jbckp2d1zp6kxsqax367vxc1970kbs9apm8sdv9bfn8majial6a", + "sha256": "1lqxprmai3vrm3hf9zdj9c9c6w05086nzn0vy88zy7xm2dgw7ylv", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/headless/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/headless/linux64", + "version": "1.1.74" }, "stable": { - "name": "factorio_headless_x64-1.1.72.tar.xz", + "name": "factorio_headless_x64-1.1.74.tar.xz", "needsAuth": false, - "sha256": "1jbckp2d1zp6kxsqax367vxc1970kbs9apm8sdv9bfn8majial6a", + "sha256": "1lqxprmai3vrm3hf9zdj9c9c6w05086nzn0vy88zy7xm2dgw7ylv", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/headless/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/headless/linux64", + "version": "1.1.74" } } } diff --git a/pkgs/games/fheroes2/default.nix b/pkgs/games/fheroes2/default.nix index 7d3123b3eb93d..e1b15b6248f45 100644 --- a/pkgs/games/fheroes2/default.nix +++ b/pkgs/games/fheroes2/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "fheroes2"; - version = "0.9.21"; + version = "1.0.0"; src = fetchFromGitHub { owner = "ihhub"; repo = "fheroes2"; rev = version; - sha256 = "sha256-b4OAuwMgVgZUdLWJp6Rv/+1X+rPcG7piIBk8SlEXoUY="; + sha256 = "sha256-86+4rFSvJ3xIVx+qDXZ65TSqIrPkbyoLNo1A+mFPdy8="; }; buildInputs = [ gettext glibcLocalesUtf8 libpng SDL2 SDL2_image SDL2_mixer SDL2_ttf zlib ]; diff --git a/pkgs/games/openrct2/default.nix b/pkgs/games/openrct2/default.nix index 04bf9d0c7f495..d474b0eae92ac 100644 --- a/pkgs/games/openrct2/default.nix +++ b/pkgs/games/openrct2/default.nix @@ -26,25 +26,25 @@ }: let - openrct2-version = "0.4.2"; + openrct2-version = "0.4.3"; # Those versions MUST match the pinned versions within the CMakeLists.txt # file. The REPLAYS repository from the CMakeLists.txt is not necessary. - objects-version = "1.3.5"; + objects-version = "1.3.7"; title-sequences-version = "0.4.0"; openrct2-src = fetchFromGitHub { owner = "OpenRCT2"; repo = "OpenRCT2"; rev = "v${openrct2-version}"; - sha256 = "sha256-38syOFZm0eGCI1vbJxG8truX5vuafwSG0lp2o499zUs="; + sha256 = "sha256-TAe9b7uqdC8XzwDWZkyYKFV+Rn2AeR3MMBZ1lo9pRis="; }; objects-src = fetchFromGitHub { owner = "OpenRCT2"; repo = "objects"; rev = "v${objects-version}"; - sha256 = "sha256-S9fjgtb45vhRTWnYEgmIlKej5fGBtnhKOn35npmX70U="; + sha256 = "sha256-6c6bbXFi6iqmOOfqggXv3DyYgo4+eiPUIDnkKAAhX5s="; }; title-sequences-src = fetchFromGitHub { diff --git a/pkgs/games/osu-lazer/default.nix b/pkgs/games/osu-lazer/default.nix index cfcb69625d8b4..f400c0e3e13ea 100644 --- a/pkgs/games/osu-lazer/default.nix +++ b/pkgs/games/osu-lazer/default.nix @@ -28,10 +28,6 @@ buildDotnetModule rec { nativeBuildInputs = [ copyDesktopItems ]; - dotnetFlags = [ - "--runtime linux-x64" - ]; - runtimeDeps = [ ffmpeg alsa-lib diff --git a/pkgs/games/prismlauncher/default.nix b/pkgs/games/prismlauncher/default.nix index 17fe569deb633..7f6ba52dccc4a 100644 --- a/pkgs/games/prismlauncher/default.nix +++ b/pkgs/games/prismlauncher/default.nix @@ -3,7 +3,7 @@ , fetchFromGitHub , cmake , jdk8 -, jdk +, jdk17 , zlib , file , wrapQtAppsHook @@ -20,7 +20,7 @@ , tomlplusplus , ghc_filesystem , msaClientID ? "" -, jdks ? [ jdk jdk8 ] +, jdks ? [ jdk17 jdk8 ] }: let @@ -34,16 +34,16 @@ in stdenv.mkDerivation rec { pname = "prismlauncher"; - version = "6.0"; + version = "6.1"; src = fetchFromGitHub { owner = "PrismLauncher"; repo = "PrismLauncher"; rev = version; - sha256 = "sha256-Kwj1GvlT12jRcf84WMSnD4xkgGL3X9AVqdGDCxMmS4E="; + sha256 = "sha256-aIBaenSnssv0/r2+UT5R4nBwo2QBGZ1Zp0CWOeiaeDE="; }; - nativeBuildInputs = [ extra-cmake-modules cmake file jdk wrapQtAppsHook ]; + nativeBuildInputs = [ extra-cmake-modules cmake file jdk17 wrapQtAppsHook ]; buildInputs = [ qtbase qtsvg diff --git a/pkgs/games/quakespasm/vulkan.nix b/pkgs/games/quakespasm/vulkan.nix index cc6793d2c0581..8b63b546cf69c 100644 --- a/pkgs/games/quakespasm/vulkan.nix +++ b/pkgs/games/quakespasm/vulkan.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "vkquake"; - version = "1.22.1"; + version = "1.22.3"; src = fetchFromGitHub { owner = "Novum"; repo = "vkQuake"; rev = version; - sha256 = "sha256-v0KLYAI9X1JYN7v8vpoAMWEHVMXytX72lOnJl2gJako="; + sha256 = "sha256-+8DU1QT3Lgqf1AIReVnXQ2Lq6R6eBb8VjdkJfAn/Rtc="; }; sourceRoot = "source/Quake"; diff --git a/pkgs/games/xivlauncher/default.nix b/pkgs/games/xivlauncher/default.nix index 0bd586d458c27..b8560f2b41347 100644 --- a/pkgs/games/xivlauncher/default.nix +++ b/pkgs/games/xivlauncher/default.nix @@ -23,12 +23,8 @@ in nugetDeps = ./deps.nix; # File generated with `nix-build -A xivlauncher.passthru.fetch-deps` dotnetFlags = [ - "--runtime linux-x64" "-p:BuildHash=${rev}" - ]; - - dotnetBuildFlags = [ - "--no-self-contained" + "-p:PublishSingleFile=false" ]; postPatch = '' diff --git a/pkgs/misc/fastly/default.nix b/pkgs/misc/fastly/default.nix index 9b81a34248dfe..081a063cdbaa7 100644 --- a/pkgs/misc/fastly/default.nix +++ b/pkgs/misc/fastly/default.nix @@ -49,8 +49,8 @@ buildGoModule rec { ]; preBuild = let cliConfigToml = fetchurl { - url = "https://web.archive.org/web/20221104122906/https://developer.fastly.com/api/internal/cli-config"; - sha256 = "sha256-BHsUWrMp//X95gcB+WbD/nfyduZUkH8jHXk3CfOBAhg="; + url = "https://web.archive.org/web/20221224152051/https://developer.fastly.com/api/internal/cli-config"; + hash = "sha256-IjakfeqjHshlGoamRJTnhUC8cTVMIY63F3vO6I/ZHO4="; }; in '' cp ${cliConfigToml} ./pkg/config/config.toml diff --git a/pkgs/misc/logging/pacemaker/default.nix b/pkgs/misc/logging/pacemaker/default.nix index 5da634203dc6c..7d8cd24e3d82d 100644 --- a/pkgs/misc/logging/pacemaker/default.nix +++ b/pkgs/misc/logging/pacemaker/default.nix @@ -29,13 +29,13 @@ stdenv.mkDerivation rec { pname = "pacemaker"; - version = "2.1.4"; + version = "2.1.5"; src = fetchFromGitHub { owner = "ClusterLabs"; repo = pname; rev = "Pacemaker-${version}"; - sha256 = "sha256-b3ljxAuawhqTnURBJMqy4Zzzfi8PCFwie/zC1yeErhQ="; + sha256 = "sha256-vsHWNKCrHJIgXlJYyZZEUfuIUBnaejPrPCM1HrYOTKQ="; }; nativeBuildInputs = [ diff --git a/pkgs/misc/tmux-plugins/default.nix b/pkgs/misc/tmux-plugins/default.nix index 2d209ce6a18b1..aee7406f9da9f 100644 --- a/pkgs/misc/tmux-plugins/default.nix +++ b/pkgs/misc/tmux-plugins/default.nix @@ -340,6 +340,24 @@ in rec { }; }; + mode-indicator = mkTmuxPlugin rec { + pluginName = "mode-indicator"; + version = "unstable-2021-10-01"; + src = fetchFromGitHub { + owner = "MunifTanjim"; + repo = "tmux-mode-indicator"; + rev = "11520829210a34dc9c7e5be9dead152eaf3a4423"; + sha256 = "sha256-hlhBKC6UzkpUrCanJehs2FxK5SoYBoiGiioXdx6trC4="; + }; + meta = with lib; { + homepage = "https://github.com/MunifTanjim/tmux-mode-indicator"; + description = "Plugin that displays prompt indicating currently active Tmux mode"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ aacebedo ]; + }; + }; + net-speed = mkTmuxPlugin { pluginName = "net-speed"; version = "unstable-2018-12-02"; diff --git a/pkgs/os-specific/darwin/plistwatch/default.nix b/pkgs/os-specific/darwin/plistwatch/default.nix new file mode 100644 index 0000000000000..852c9c23aa9bf --- /dev/null +++ b/pkgs/os-specific/darwin/plistwatch/default.nix @@ -0,0 +1,31 @@ +{ lib +, buildGoModule +, fetchFromGitHub +}: + +buildGoModule rec { + pname = "plistwatch"; + version = "unstable-2020-12-22"; + + src = fetchFromGitHub { + owner = "catilac"; + repo = "plistwatch"; + rev = "c3a9afd8d3e5ffa8dcc379770bc4216bae88a671"; + sha256 = "0a5rfmpy6h06p02z9gdilh7vr3h9cc6n6zzygpjk6zvnqs3mm3vx"; + }; + + vendorSha256 = "sha256-Layg1axFN86OFgxEyNFtIlm6Jtx317jZb/KH6IjJ8e4="; + + #add missing dependencies and hashes + patches = [ ./go-modules.patch ]; + + doCheck = false; + + meta = with lib; { + description = "Monitors and prints changes to MacOS plists in real time"; + homepage = "https://github.com/catilac/plistwatch"; + maintainers = with maintainers; [ gdinh ]; + license = licenses.mit; + platforms = platforms.darwin; + }; +} diff --git a/pkgs/os-specific/darwin/plistwatch/go-modules.patch b/pkgs/os-specific/darwin/plistwatch/go-modules.patch new file mode 100644 index 0000000000000..94d7cc01e24e3 --- /dev/null +++ b/pkgs/os-specific/darwin/plistwatch/go-modules.patch @@ -0,0 +1,19 @@ +--- a/go.mod ++++ b/go.mod +@@ -3,1 +3,6 @@ + go 1.14 ++ require( ++ github.com/jessevdk/go-flags v1.5.0 ++ howett.net/plist v0.0.0-20200419221736-3b63eb3a43b5 ++ gopkg.in/yaml.v1 v1.0.0-20140924161607-9f9df34309c0 // indirect ++ ) +--- a/go.sum ++++ b/go.sum +@@ -9,1 +9,7 @@ + howett.net/plist v0.0.0-20200419221736-3b63eb3a43b5/go.mod h1:vMygbs4qMhSZSc4lCUl2OEE+rDiIIJAIdR4m7MiMcm0= ++ gopkg.in/yaml.v1 v1.0.0-20140924161607-9f9df34309c0 h1:POO/ycCATvegFmVuPpQzZFJ+pGZeX22Ufu6fibxDVjU= ++ gopkg.in/yaml.v1 v1.0.0-20140924161607-9f9df34309c0/go.mod h1:WDnlLJ4WF5VGsH/HVa3CI79GS0ol3YnhVnKP89i0kNg= ++ github.com/jessevdk/go-flags v1.5.0 h1:1jKYvbxEjfUl0fmqTCOfonvskHHXMjBySTLW4y9LFvc= ++ github.com/jessevdk/go-flags v1.5.0/go.mod h1:Fw0T6WPc1dYxT4mKEZRfG5kJhaTDP9pj1c2EWnYs/m4= ++ golang.org/x/sys v0.0.0-20210320140829-1e4c9ba3b0c4 h1:EZ2mChiOa8udjfp6rRmswTbtZN/QzUQp4ptM4rnjHvc= ++ golang.org/x/sys v0.0.0-20210320140829-1e4c9ba3b0c4/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= diff --git a/pkgs/os-specific/linux/bcc/default.nix b/pkgs/os-specific/linux/bcc/default.nix index d8026fa0d6967..772447ed0c96b 100644 --- a/pkgs/os-specific/linux/bcc/default.nix +++ b/pkgs/os-specific/linux/bcc/default.nix @@ -7,7 +7,7 @@ python.pkgs.buildPythonApplication rec { pname = "bcc"; - version = "0.25.0"; + version = "0.26.0"; disabled = !stdenv.isLinux; @@ -15,7 +15,7 @@ python.pkgs.buildPythonApplication rec { owner = "iovisor"; repo = "bcc"; rev = "v${version}"; - sha256 = "sha256-05FQWBxFI8bxjm6vDCoEqqpAd4Agn84M28P3G6F3tag="; + sha256 = "sha256-zx38tPwuuGU6px9pRNN5JtvBysK9fStOvoqe7cLo7LM="; }; format = "other"; diff --git a/pkgs/os-specific/linux/broadcom-sta/default.nix b/pkgs/os-specific/linux/broadcom-sta/default.nix index 661bb7fc922b5..6b7d8b912fa26 100644 --- a/pkgs/os-specific/linux/broadcom-sta/default.nix +++ b/pkgs/os-specific/linux/broadcom-sta/default.nix @@ -45,6 +45,8 @@ stdenv.mkDerivation { ./linux-5.18.patch # source: https://gist.github.com/joanbm/207210d74637870c01ef5a3c262a597d ./linux-6.0.patch + # source: https://gist.github.com/joanbm/94323ea99eff1e1d1c51241b5b651549 + ./linux-6.1.patch ./pedantic-fix.patch ./null-pointer-fix.patch ./gcc.patch diff --git a/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch b/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch new file mode 100644 index 0000000000000..5ececd487d741 --- /dev/null +++ b/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch @@ -0,0 +1,83 @@ +From a63a5f70e5cf05f6bce4cda2e0dd67462e1d76a5 Mon Sep 17 00:00:00 2001 +From: Joan Bruguera <joanbrugueram@gmail.com> +Date: Mon, 29 Aug 2022 00:06:53 +0200 +Subject: [PATCH] Tentative patch for broadcom-wl 6.30.223.271 driver for Linux 6.1-rc1 + +Applies on top of all the patches applied to broadcom-wl-dkms 6.30.223.271-35 on Arch Linux +--- + src/wl/sys/wl_cfg80211_hybrid.c | 21 +++++++++++++-------- + 1 file changed, 13 insertions(+), 8 deletions(-) + +diff --git a/src/wl/sys/wl_cfg80211_hybrid.c b/src/wl/sys/wl_cfg80211_hybrid.c +index 4fef22a..50d1e34 100644 +--- a/src/wl/sys/wl_cfg80211_hybrid.c ++++ b/src/wl/sys/wl_cfg80211_hybrid.c +@@ -105,20 +105,25 @@ static s32 wl_cfg80211_get_tx_power(struct wiphy *wiphy, struct wireless_dev *wd + static s32 wl_cfg80211_get_tx_power(struct wiphy *wiphy, s32 *dbm); + #endif + ++#if LINUX_VERSION_CODE >= KERNEL_VERSION(6, 1, 0) ++#define MAYBE_INT_LINK_ID int link_id, ++#else ++#define MAYBE_INT_LINK_ID ++#endif + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 38) + static s32 wl_cfg80211_config_default_key(struct wiphy *wiphy, +- struct net_device *dev, u8 key_idx, bool unicast, bool multicast); ++ struct net_device *dev, MAYBE_INT_LINK_ID u8 key_idx, bool unicast, bool multicast); + #else + static s32 wl_cfg80211_config_default_key(struct wiphy *wiphy, + struct net_device *dev, u8 key_idx); + #endif + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params); ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params); + static s32 wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr); ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr); + static s32 wl_cfg80211_get_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, + void *cookie, void (*callback) (void *cookie, struct key_params *params)); + #else + static s32 wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +@@ -1165,7 +1170,7 @@ static s32 wl_cfg80211_get_tx_power(struct wiphy *wiphy, s32 *dbm) + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 38) + static s32 + wl_cfg80211_config_default_key(struct wiphy *wiphy, +- struct net_device *dev, u8 key_idx, bool unicast, bool multicast) ++ struct net_device *dev, MAYBE_INT_LINK_ID u8 key_idx, bool unicast, bool multicast) + #else + static s32 + wl_cfg80211_config_default_key(struct wiphy *wiphy, +@@ -1190,7 +1195,7 @@ wl_cfg80211_config_default_key(struct wiphy *wiphy, + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 + wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params) ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params) + #else + static s32 + wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +@@ -1311,7 +1316,7 @@ wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 + wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr) ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr) + #else + static s32 + wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, +@@ -1354,7 +1359,7 @@ wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 + wl_cfg80211_get_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, void *cookie, ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, void *cookie, + void (*callback) (void *cookie, struct key_params * params)) + #else + static s32 +-- +2.37.2 + diff --git a/pkgs/os-specific/linux/firmware/linux-firmware/source.nix b/pkgs/os-specific/linux/firmware/linux-firmware/source.nix index fefd7c56d7610..2ed667f40ce73 100644 --- a/pkgs/os-specific/linux/firmware/linux-firmware/source.nix +++ b/pkgs/os-specific/linux/firmware/linux-firmware/source.nix @@ -1,6 +1,6 @@ # This file is autogenerated! Run ./update.sh to regenerate. { - version = "20221109"; - sourceHash = "sha256-77xRUo4g24j5rGWYzVn/DZ1rfY+Ks9cmZ/+GCHELP5E="; - outputHash = "sha256-pPhqbi4PRr+0FQ7K8M/SibgYeI45spcdqgb5garyJo8="; + version = "20221214"; + sourceHash = "sha256-vljUwXekmCYAH932wfbJe/hC4TDPRQOgEiPTUMeUKLE="; + outputHash = "sha256-h0cCqnl6XvSoeyq54JHvl45z7qe/7ZKrcMNJJeqVLMk="; } diff --git a/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix b/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix index 8e71770df9ce3..b7289625dae9f 100644 --- a/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix +++ b/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix @@ -1,8 +1,18 @@ -{ stdenvNoCC, lib, linuxPackages }: +{ stdenvNoCC, lib, fetchFromGitHub }: stdenvNoCC.mkDerivation { pname = "rtw89-firmware"; - inherit (linuxPackages.rtw89) version src; + + # TODO: probably remove after updating linux firmware + # https://github.com/lwfinger/rtw89/commit/a2c113501a5a988683f236df1aa79ce40f29e1be + version = "unstable-2021-10-21"; + + src = fetchFromGitHub { + owner = "lwfinger"; + repo = "rtw89"; + rev = "0684157cba90e36bff5bc61a59e7e87c359b5e5c"; + sha256 = "0cvawyi1ksw9xkr8pzwipsl7b8hnmrb17w5cblyicwih8fqaw632"; + }; dontBuild = true; diff --git a/pkgs/os-specific/linux/fnotifystat/default.nix b/pkgs/os-specific/linux/fnotifystat/default.nix index cffdc72909d2f..c5682c6942fce 100644 --- a/pkgs/os-specific/linux/fnotifystat/default.nix +++ b/pkgs/os-specific/linux/fnotifystat/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "fnotifystat"; - version = "0.02.08"; + version = "0.02.09"; src = fetchFromGitHub { owner = "ColinIanKing"; repo = pname; rev = "V${version}"; - hash = "sha256-+vNBufCrXfMinEZhXDZJCwoI9zxrcTy0fOEdswoaNkw="; + hash = "sha256-YyIk7x0B3JB/iMF9OP767fVEBgcV0duV7xIiHZxpL0w="; }; installFlags = [ diff --git a/pkgs/os-specific/linux/intel-cmt-cat/default.nix b/pkgs/os-specific/linux/intel-cmt-cat/default.nix index dd96e518300ec..16cb022eb6f25 100644 --- a/pkgs/os-specific/linux/intel-cmt-cat/default.nix +++ b/pkgs/os-specific/linux/intel-cmt-cat/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "4.4.1"; + version = "4.5.0"; pname = "intel-cmt-cat"; src = fetchFromGitHub { owner = "intel"; repo = "intel-cmt-cat"; rev = "v${version}"; - sha256 = "sha256-6v9MRIW9Wqojia6GZNM75AvoYJGJ9C/k+ShwQKOjiL8="; + sha256 = "sha256-gjJtwEDvPW0JDwlIUXSmv1wm4TknKsE/BLKHiqIgjho="; }; enableParallelBuilding = true; diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index 5ac0c9dc683b7..ca8d5f90f660f 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -22,41 +22,41 @@ "5.10": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.10.159-hardened1.patch", - "sha256": "0kjiijq9qd5zyy2gvsn8xv99jv5crfyqi69lchmsqk1gs4qhs7m9", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.159-hardened1/linux-hardened-5.10.159-hardened1.patch" + "name": "linux-hardened-5.10.161-hardened1.patch", + "sha256": "0lkgixy3qn2lf2snp7zsxyp6fad0b6yvvg2hk6l1jp9z8293gsap", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.161-hardened1/linux-hardened-5.10.161-hardened1.patch" }, - "sha256": "19yfi5vknxnw0cb8274q3pb5zjs6ny04n16m8xjdfdmznrbvza8v", - "version": "5.10.159" + "sha256": "0ya04njrxr4d37zkxvivmn5f0bdvcb504pyp9ahwz8nqpk8gdaks", + "version": "5.10.161" }, "5.15": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.15.83-hardened1.patch", - "sha256": "0cyd14xlmiy7bj5psjws2p1xdc7vzhv1hy77xca4mlwssb41zvdb", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.83-hardened1/linux-hardened-5.15.83-hardened1.patch" + "name": "linux-hardened-5.15.85-hardened1.patch", + "sha256": "03zjcjyiklhxhq958hx1mlhhjcz0isdrij217q8ji78bz3y40m0q", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.85-hardened1/linux-hardened-5.15.85-hardened1.patch" }, - "sha256": "1wvzfhzqq9dps508wmp2gblfz93ipppnjzqm0n8pi1acq11hhna0", - "version": "5.15.83" + "sha256": "024qhjh9mgfnanr1qd8002n6a4wpn98lajli12a0m3n9z8lsw2rc", + "version": "5.15.85" }, "5.4": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.4.227-hardened1.patch", - "sha256": "1q5xxaz154iz65x6n4m1lfsly9p978zzrnp9xdh6sp1cw8g39fyn", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.227-hardened1/linux-hardened-5.4.227-hardened1.patch" + "name": "linux-hardened-5.4.228-hardened1.patch", + "sha256": "0rf324pps25snfcbpfkyxmf6qzx7qjkz0qcnjwrb2lh5fbvx0vik", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.228-hardened1/linux-hardened-5.4.228-hardened1.patch" }, - "sha256": "14q5gy48j78vwnqivrgpdhj778n2jq5l7yiw5na1rwqmfh1wbvsy", - "version": "5.4.227" + "sha256": "0935dq7zbpf0fkppl3q96a2gh1zrmq01h1nivzgmdhjlmhn3n9c0", + "version": "5.4.228" }, "6.0": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-6.0.13-hardened1.patch", - "sha256": "0v037rg3h8khjdr1hhkpqv2xb9g5vc7dklxf8zidaww27gb2g528", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/6.0.13-hardened1/linux-hardened-6.0.13-hardened1.patch" + "name": "linux-hardened-6.0.15-hardened1.patch", + "sha256": "0v7aqxa6ba2jkx1dd9axr9vsnn3pbq30vwfd0akc72zc8c5zll1r", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/6.0.15-hardened1/linux-hardened-6.0.15-hardened1.patch" }, - "sha256": "191dlxcmbx8vy6z2k04jq2kr6hwnaknsnsyycvqnjmvmdf6i3lq8", - "version": "6.0.13" + "sha256": "08389890gq4b9vkvrb22lzkr4blkn3a5ma074ns19gl89wyyp16l", + "version": "6.0.15" } } diff --git a/pkgs/os-specific/linux/kernel/linux-5.10.nix b/pkgs/os-specific/linux/kernel/linux-5.10.nix index 5614aeb1cabfc..72b62e6b2d899 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.10.159"; + version = "5.10.161"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "19yfi5vknxnw0cb8274q3pb5zjs6ny04n16m8xjdfdmznrbvza8v"; + sha256 = "0ya04njrxr4d37zkxvivmn5f0bdvcb504pyp9ahwz8nqpk8gdaks"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.15.nix b/pkgs/os-specific/linux/kernel/linux-5.15.nix index 8e07ff461ef69..65abe73b120fd 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.15.83"; + version = "5.15.85"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1wvzfhzqq9dps508wmp2gblfz93ipppnjzqm0n8pi1acq11hhna0"; + sha256 = "024qhjh9mgfnanr1qd8002n6a4wpn98lajli12a0m3n9z8lsw2rc"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index b45ef4f3b502c..1dd9521ad0d2c 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.4.227"; + version = "5.4.228"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "14q5gy48j78vwnqivrgpdhj778n2jq5l7yiw5na1rwqmfh1wbvsy"; + sha256 = "0935dq7zbpf0fkppl3q96a2gh1zrmq01h1nivzgmdhjlmhn3n9c0"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-6.0.nix b/pkgs/os-specific/linux/kernel/linux-6.0.nix index 2bd2a3f07c1d1..6865bd9f6ed08 100644 --- a/pkgs/os-specific/linux/kernel/linux-6.0.nix +++ b/pkgs/os-specific/linux/kernel/linux-6.0.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "6.0.13"; + version = "6.0.15"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${version}.tar.xz"; - sha256 = "191dlxcmbx8vy6z2k04jq2kr6hwnaknsnsyycvqnjmvmdf6i3lq8"; + sha256 = "08389890gq4b9vkvrb22lzkr4blkn3a5ma074ns19gl89wyyp16l"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-6.1.nix b/pkgs/os-specific/linux/kernel/linux-6.1.nix index 64ed1a717caf2..1e5917db8de57 100644 --- a/pkgs/os-specific/linux/kernel/linux-6.1.nix +++ b/pkgs/os-specific/linux/kernel/linux-6.1.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "6.1"; + version = "6.1.1"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${version}.tar.xz"; - sha256 = "sha256-LKHxcFGkMPb+0RluSVJxdQcXGs/ZfZZXchJQJwOyXes="; + sha256 = "1yqxjz0f722s2bcssqg5b6m6lvq5l4vrlh3bjviajda4rxvi7rm3"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/nftables/default.nix b/pkgs/os-specific/linux/nftables/default.nix index abbb3d04a0684..340ad619ecb6c 100644 --- a/pkgs/os-specific/linux/nftables/default.nix +++ b/pkgs/os-specific/linux/nftables/default.nix @@ -9,12 +9,12 @@ }: stdenv.mkDerivation rec { - version = "1.0.5"; + version = "1.0.6"; pname = "nftables"; src = fetchurl { - url = "https://netfilter.org/projects/nftables/files/${pname}-${version}.tar.bz2"; - hash = "sha256-jRtLGDk69DaY0QuqJdK5tjl5ab7srHgWw13QcU5N5Qo="; + url = "https://netfilter.org/projects/nftables/files/${pname}-${version}.tar.xz"; + hash = "sha256-JAdDDd2CmHZw5I3C/anigLqoMHq+wEqxjWCd89sAXkw="; }; nativeBuildInputs = [ diff --git a/pkgs/os-specific/linux/openvswitch/default.nix b/pkgs/os-specific/linux/openvswitch/default.nix index 9d902fe9b70f7..3fc597beaab33 100644 --- a/pkgs/os-specific/linux/openvswitch/default.nix +++ b/pkgs/os-specific/linux/openvswitch/default.nix @@ -1,4 +1,4 @@ import ./generic.nix { - version = "3.0.1"; - hash = "sha256-5KEXFtCRn1syOSKLMrrcEJtWGl/maLlUfhQ7CxlbvWg="; + version = "3.0.3"; + hash = "sha256-9QZlCnbx8s7737WD80NBIQLxcKvFXG/4dWd5Jrm9lGM="; } diff --git a/pkgs/os-specific/linux/openvswitch/lts.nix b/pkgs/os-specific/linux/openvswitch/lts.nix index 453d05a5afc17..d5ceae939a40d 100644 --- a/pkgs/os-specific/linux/openvswitch/lts.nix +++ b/pkgs/os-specific/linux/openvswitch/lts.nix @@ -1,4 +1,4 @@ import ./generic.nix { - version = "2.17.3"; - hash = "sha256-RGgR/JGuJFzDGQSmk3H7C/BEb3sk6yOaA320ADUwEcA="; + version = "2.17.5"; + hash = "sha256-Woye+zUikjdGWIp8pRDBC7CsUrnInfJ23byGcxFtwQY="; } diff --git a/pkgs/os-specific/linux/prl-tools/default.nix b/pkgs/os-specific/linux/prl-tools/default.nix index e3d70f046756c..6ea2da037ac36 100644 --- a/pkgs/os-specific/linux/prl-tools/default.nix +++ b/pkgs/os-specific/linux/prl-tools/default.nix @@ -24,14 +24,14 @@ assert (!libsOnly) -> kernel != null; stdenv.mkDerivation rec { - version = "18.1.0-53311"; + version = "18.1.1-53328"; pname = "prl-tools"; # We download the full distribution to extract prl-tools-lin.iso from # => ${dmg}/Parallels\ Desktop.app/Contents/Resources/Tools/prl-tools-lin.iso src = fetchurl { url = "https://download.parallels.com/desktop/v${lib.versions.major version}/${version}/ParallelsDesktop-${version}.dmg"; - sha256 = "sha256-2ROPFIDoV2/sMVsVhcSyn0m1QVMCNb399WzKd/cozws="; + sha256 = "sha256-Vw9i7Diki+hKODeosxfCY5bL/UOfwgzeCC6+QmWfIZw="; }; hardeningDisable = [ "pic" "format" ]; diff --git a/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix b/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix index 5fd6fd45b3571..63ab388eb61f1 100644 --- a/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix +++ b/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix @@ -3,13 +3,13 @@ }: stdenvNoCC.mkDerivation rec { pname = "raspberrypi-eeprom"; - version = "2022.04.26-138a1"; + version = "2022.12.07-138a1"; src = fetchFromGitHub { owner = "raspberrypi"; repo = "rpi-eeprom"; rev = "v${version}"; - hash = "sha256-/Y+EaAxJQofDRE67HY8AVqAdOPdFI01/EhYCAT5qlSM="; + hash = "sha256-/Q9zj/Hn/8S7bF1CN6ZCg705VYU+QUagNr4RNgZl+oA="; }; buildInputs = [ python3 ]; diff --git a/pkgs/os-specific/linux/rtl88x2bu/default.nix b/pkgs/os-specific/linux/rtl88x2bu/default.nix index adc11f17272a6..38ded6041f598 100644 --- a/pkgs/os-specific/linux/rtl88x2bu/default.nix +++ b/pkgs/os-specific/linux/rtl88x2bu/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "rtl88x2bu"; - version = "${kernel.version}-unstable-2022-08-18"; + version = "${kernel.version}-unstable-2022-12-17"; src = fetchFromGitHub { owner = "morrownr"; repo = "88x2bu-20210702"; - rev = "6dda660a6af1b18654bbbbedd933cdf30683b7a1"; - sha256 = "sha256-o+SLc8EQA3DHYdZQToyoZS0TFkuVEnFStQQUOCFPYXI="; + rev = "9a04d2bb9d882c7f2708560774d7b96a70d83f4b"; + sha256 = "sha256-PxTUCYBfyCDB8IjNKsp7aiPtSI3TFzGuJsHqG66e2Q0="; }; hardeningDisable = [ "pic" ]; diff --git a/pkgs/os-specific/linux/rtw89/default.nix b/pkgs/os-specific/linux/rtw89/default.nix index 6ff208fa6dd9c..1bb42860a8c76 100644 --- a/pkgs/os-specific/linux/rtw89/default.nix +++ b/pkgs/os-specific/linux/rtw89/default.nix @@ -5,13 +5,13 @@ let in stdenv.mkDerivation { pname = "rtw89"; - version = "unstable-2021-10-21"; + version = "unstable-2022-12-18"; src = fetchFromGitHub { owner = "lwfinger"; repo = "rtw89"; - rev = "0684157cba90e36bff5bc61a59e7e87c359b5e5c"; - sha256 = "0cvawyi1ksw9xkr8pzwipsl7b8hnmrb17w5cblyicwih8fqaw632"; + rev = "e834edfe8bee6e27e31c2f783817a9c13ff45665"; + sha256 = "19ApYiEvA0E6qgf5XQc03paZ+ghjZL8JoC3vSYYw3xU="; }; nativeBuildInputs = kernel.moduleBuildDependencies; @@ -30,12 +30,12 @@ stdenv.mkDerivation { ''; meta = with lib; { - description = " Driver for Realtek 8852AE, an 802.11ax device"; + description = " Driver for Realtek 8852AE, 8852BE, and 8853CE, 802.11ax devices"; homepage = "https://github.com/lwfinger/rtw89"; license = with licenses; [ gpl2Only ]; maintainers = with maintainers; [ tvorog ]; platforms = platforms.linux; - broken = kernel.kernelOlder "5.4"; + broken = kernel.kernelOlder "5.7"; priority = -1; }; } diff --git a/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix b/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix new file mode 100644 index 0000000000000..5440e41753514 --- /dev/null +++ b/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix @@ -0,0 +1,93 @@ +{ stdenv +, fetchFromGitHub +, fetchurl +, lib +, curl +, nlohmann_json +, openssl +, pkg-config +, linkFarmFromDrvs +, callPackage +}: + +let + # Although those headers are also included in the source of `sgx-psw`, the `azure-dcap-client` build needs specific versions + filterSparse = list: '' + cp -r "$out"/. . + find "$out" -mindepth 1 -delete + cp ${lib.concatStringsSep " " list} "$out/" + ''; + headers = linkFarmFromDrvs "azure-dcpa-client-intel-headers" [ + (fetchFromGitHub rec { + name = "${repo}-headers"; + owner = "intel"; + repo = "SGXDataCenterAttestationPrimitives"; + rev = "0436284f12f1bd5da7e7a06f6274d36b4c8d39f9"; + sparseCheckout = [ "QuoteGeneration/quote_wrapper/common/inc/sgx_ql_lib_common.h" ]; + hash = "sha256-ipKpYHbiwjCUXF/pCArJZy5ko1YX2wqMMdSnMUzhkgY="; + postFetch = filterSparse sparseCheckout; + }) + (fetchFromGitHub rec { + name = "${repo}-headers"; + owner = "intel"; + repo = "linux-sgx"; + rev = "1ccf25b64abd1c2eff05ead9d14b410b3c9ae7be"; + hash = "sha256-WJRoS6+NBVJrFmHABEEDpDhW+zbWFUl65AycCkRavfs="; + sparseCheckout = [ + "common/inc/sgx_report.h" + "common/inc/sgx_key.h" + "common/inc/sgx_attributes.h" + ]; + postFetch = filterSparse sparseCheckout; + }) + ]; +in +stdenv.mkDerivation rec { + pname = "azure-dcap-client"; + version = "1.11.2"; + + src = fetchFromGitHub { + owner = "microsoft"; + repo = pname; + rev = version; + hash = "sha256-EYj3jnzTyJRl6N7avNf9VrB8r9U6zIE6wBNeVsMtWCA="; + }; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + curl + nlohmann_json + openssl + ]; + + postPatch = '' + mkdir -p src/Linux/ext/intel + find -L '${headers}' -type f -exec ln -s {} src/Linux/ext/intel \; + + substitute src/Linux/Makefile{.in,} \ + --replace '##CURLINC##' '${curl.dev}/include/curl/' \ + --replace '$(TEST_SUITE): $(PROVIDER_LIB) $(TEST_SUITE_OBJ)' '$(TEST_SUITE): $(TEST_SUITE_OBJ)' + ''; + + NIX_CFLAGS_COMPILE = "-Wno-deprecated-declarations"; + + makeFlags = [ + "-C src/Linux" + "prefix=$(out)" + ]; + + # Online test suite; run with + # $(nix-build -A sgx-azure-dcap-client.tests.suite)/bin/tests + passthru.tests.suite = callPackage ./test-suite.nix { }; + + meta = with lib; { + description = "Interfaces between SGX SDKs and the Azure Attestation SGX Certification Cache"; + homepage = "https://github.com/microsoft/azure-dcap-client"; + maintainers = with maintainers; [ trundle veehaitch ]; + platforms = [ "x86_64-linux" ]; + license = [ licenses.mit ]; + }; +} diff --git a/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix b/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix new file mode 100644 index 0000000000000..71fdb2bab39cb --- /dev/null +++ b/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix @@ -0,0 +1,27 @@ +{ lib +, sgx-azure-dcap-client +, gtest +, makeWrapper +}: +sgx-azure-dcap-client.overrideAttrs (oldAttrs: { + nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ + makeWrapper + gtest + ]; + + buildFlags = [ + "tests" + ]; + + installPhase = '' + runHook preInstall + + install -D ./src/Linux/tests "$out/bin/tests" + + runHook postInstall + ''; + + postFixup = '' + wrapProgram "$out/bin/tests" --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ sgx-azure-dcap-client ]}" + ''; +}) diff --git a/pkgs/os-specific/linux/sgx/psw/default.nix b/pkgs/os-specific/linux/sgx/psw/default.nix index 2077d23bc9d75..ba2d0967e45de 100644 --- a/pkgs/os-specific/linux/sgx/psw/default.nix +++ b/pkgs/os-specific/linux/sgx/psw/default.nix @@ -121,7 +121,7 @@ stdenv.mkDerivation rec { mkdir $out/bin makeWrapper $out/aesm/aesm_service $out/bin/aesm_service \ - --prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ protobuf ]}:$out/aesm \ + --suffix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ protobuf ]}:$out/aesm \ --chdir "$out/aesm" # Make sure we didn't forget to handle any files diff --git a/pkgs/os-specific/solo5/default.nix b/pkgs/os-specific/solo5/default.nix index 87e992555548a..08c9f223ef79f 100644 --- a/pkgs/os-specific/solo5/default.nix +++ b/pkgs/os-specific/solo5/default.nix @@ -34,6 +34,9 @@ in stdenv.mkDerivation { enableParallelBuilding = true; + separateDebugInfo = true; + # debugging requires information for both the unikernel and the tender + installPhase = '' runHook preInstall export DESTDIR=$out diff --git a/pkgs/servers/bloat/default.nix b/pkgs/servers/bloat/default.nix index 4e02b0f6931ca..bbafb591824fe 100644 --- a/pkgs/servers/bloat/default.nix +++ b/pkgs/servers/bloat/default.nix @@ -6,12 +6,12 @@ buildGoModule { pname = "bloat"; - version = "unstable-2022-10-25"; + version = "unstable-2022-12-17"; src = fetchgit { url = "git://git.freesoftwareextremist.com/bloat"; - rev = "887ed241d64ba5db3fd3d87194fb5595e5ad7d73"; - sha256 = "sha256-2G7DcK21GBICdQYWRTTMzHmkrgstrEelVlLcYgKlUGM="; + rev = "5147897c6c8ba3428ea6998f77241182ee8caa24"; + sha256 = "sha256-/sSRzAAWO/KtXOD3lQsqaXc+lOuN7MJqbfASueLYBQk="; }; vendorSha256 = null; diff --git a/pkgs/servers/computing/slurm/default.nix b/pkgs/servers/computing/slurm/default.nix index dce740a985428..1bee79918927c 100644 --- a/pkgs/servers/computing/slurm/default.nix +++ b/pkgs/servers/computing/slurm/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { pname = "slurm"; - version = "22.05.6.1"; + version = "22.05.7.1"; # N.B. We use github release tags instead of https://www.schedmd.com/downloads.php # because the latter does not keep older releases. @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { repo = "slurm"; # The release tags use - instead of . rev = "${pname}-${builtins.replaceStrings ["."] ["-"] version}"; - sha256 = "1aa1ddlacr9dpk1g1syj9ml5dninv3dzvw8vlm1s3j3ybp6lz8bd"; + sha256 = "1hr62c9g0z3brgpa2l68pskraqxk52dk1iq1xkb0dr5w0cwhdpij"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix index 45f5c7a2e4831..116498c966e4e 100644 --- a/pkgs/servers/dns/bind/default.nix +++ b/pkgs/servers/dns/bind/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "bind"; - version = "9.18.8"; + version = "9.18.9"; src = fetchurl { url = "https://downloads.isc.org/isc/bind9/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-Djw6uTeNuEug83Bz1nuhJa5PL/ja82bJ2yh+PxssNfA="; + sha256 = "sha256-apZlmY1WhgRGDfCRj8jM+tfSk4jU2EJWDAVswhHLskM="; }; outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ]; diff --git a/pkgs/servers/dns/nsd/default.nix b/pkgs/servers/dns/nsd/default.nix index 4eeb47870ffd3..228fc367bef9d 100644 --- a/pkgs/servers/dns/nsd/default.nix +++ b/pkgs/servers/dns/nsd/default.nix @@ -16,11 +16,11 @@ stdenv.mkDerivation rec { pname = "nsd"; - version = "4.6.0"; + version = "4.6.1"; src = fetchurl { url = "https://www.nlnetlabs.nl/downloads/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-CQYtm4Pfzd5OTlPsNhVJbWjCgh2DgdDUZOvqMaWXXIE="; + sha256 = "sha256-P2CjoT7D9o6Ev6fhna/2Y8grzx3pbk9T8iRlJedzono="; }; prePatch = '' diff --git a/pkgs/servers/geospatial/tile38/default.nix b/pkgs/servers/geospatial/tile38/default.nix index 2bf73c8860bf4..341cd65afa591 100644 --- a/pkgs/servers/geospatial/tile38/default.nix +++ b/pkgs/servers/geospatial/tile38/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "tile38"; - version = "1.30.0"; + version = "1.30.1"; src = fetchFromGitHub { owner = "tidwall"; repo = pname; rev = version; - sha256 = "sha256-5w6L0AiDjbdBvUFeTcRosTEqloh4W3/vmYiycuLfGtA="; + sha256 = "sha256-/jFIj35PazQ11PcnYfuJXXSjPpKtNDshzQXnXkSCI8c="; }; vendorSha256 = "sha256-KOoSIVCbWlLenFP4SFBXPbZW9KUSL9KTcLXED72tABo="; diff --git a/pkgs/servers/gonic/default.nix b/pkgs/servers/gonic/default.nix index b2f3d61d8f4de..6e53286fcd584 100644 --- a/pkgs/servers/gonic/default.nix +++ b/pkgs/servers/gonic/default.nix @@ -1,6 +1,5 @@ { lib, stdenv, buildGoModule, fetchFromGitHub -, pkg-config, taglib, alsa-lib -, zlib, AudioToolbox, AppKit +, pkg-config, taglib, zlib # Disable on-the-fly transcoding, # removing the dependency on ffmpeg. @@ -8,32 +7,37 @@ # to the original file, but if transcoding is configured # that takes a while. So best to disable all transcoding # in the configuration if you disable transcodingSupport. -, transcodingSupport ? true, ffmpeg }: +, transcodingSupport ? true, ffmpeg +, mpv }: buildGoModule rec { pname = "gonic"; - version = "0.14.0"; + version = "0.15.0"; src = fetchFromGitHub { owner = "sentriz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-wX97HtvHgHpKTDwZl/wHQRpiyDJ7U38CpdzWu/CYizQ="; + sha256 = "sha256-sTvdMLa7rwrTRDH5DR5nJCzzbtXM9y8mq63CNR1lVfI="; }; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ taglib zlib ] - ++ lib.optionals stdenv.isLinux [ alsa-lib ] - ++ lib.optionals stdenv.isDarwin [ AudioToolbox AppKit ]; - vendorSha256 = "sha256-oTuaA5ZsZ7zMcjzGh37zO/1XyOfj6xjfNr6A7ecrOiA="; + buildInputs = [ taglib zlib ]; + vendorSha256 = "sha256-B9qzhh7FKkZPfuylxlyNP0blU5sjGwM6bLsw+vFkkb4="; # TODO(Profpatsch): write a test for transcoding support, # since it is prone to break postPatch = lib.optionalString transcodingSupport '' substituteInPlace \ - server/encode/encode.go \ + transcode/transcode.go \ --replace \ - '"ffmpeg"' \ - '"${lib.getBin ffmpeg}/bin/ffmpeg"' + '`ffmpeg' \ + '`${lib.getBin ffmpeg}/bin/ffmpeg' + '' + '' + substituteInPlace \ + jukebox/jukebox.go \ + --replace \ + '"mpv"' \ + '"${lib.getBin mpv}/bin/mpv"' ''; meta = { @@ -41,5 +45,6 @@ buildGoModule rec { description = "Music streaming server / subsonic server API implementation"; license = lib.licenses.gpl3Plus; maintainers = with lib.maintainers; [ Profpatsch ]; + platforms = lib.platforms.linux; }; } diff --git a/pkgs/servers/headscale/default.nix b/pkgs/servers/headscale/default.nix index 34455918c2fff..a577b6251c52f 100644 --- a/pkgs/servers/headscale/default.nix +++ b/pkgs/servers/headscale/default.nix @@ -1,21 +1,28 @@ -{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: - +{ + lib, + buildGoModule, + fetchFromGitHub, + installShellFiles, +}: buildGoModule rec { pname = "headscale"; - version = "0.16.4"; + version = "0.17.1"; src = fetchFromGitHub { owner = "juanfont"; repo = "headscale"; rev = "v${version}"; - sha256 = "sha256-j5fbWxRMkYlsgL1QDEDlitKB3FOmDTy17FcuztALISw="; + sha256 = "sha256-/NJUtmH67VZERCvExcX4W4T9Rcixc5m28ujNcrQduWg="; }; - vendorSha256 = "sha256-RzmnAh81BN4tbzAGzJbb6CMuws8kuPJDw7aPkRRnSS8="; + vendorSha256 = "sha256-Y1IK9Tx2sv0v27ZYtSxDP9keHQ7skctDOa+37pNGEC8="; + + ldflags = ["-s" "-w" "-X github.com/juanfont/headscale/cmd/headscale/cli.Version=v${version}"]; - ldflags = [ "-s" "-w" "-X github.com/juanfont/headscale/cmd/headscale/cli.Version=v${version}" ]; + nativeBuildInputs = [installShellFiles]; + checkFlags = ["-short"]; - nativeBuildInputs = [ installShellFiles ]; + tags = ["ts2019"]; postInstall = '' installShellCompletion --cmd headscale \ @@ -44,6 +51,6 @@ buildGoModule rec { Headscale implements this coordination server. ''; license = licenses.bsd3; - maintainers = with maintainers; [ nkje jk kradalby ]; + maintainers = with maintainers; [nkje jk kradalby misterio77 ghuntley]; }; } diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index 46dd1f1f067bd..b72fa929a7dbd 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -2,7 +2,7 @@ # Do not edit! { - version = "2022.12.6"; + version = "2022.12.8"; components = { "3_day_blinds" = ps: with ps; [ ]; @@ -429,7 +429,8 @@ "bt_home_hub_5" = ps: with ps; [ ]; # missing inputs: bthomehub5-devicelist "bt_smarthub" = ps: with ps; [ - ]; # missing inputs: btsmarthub_devicelist + btsmarthub_devicelist + ]; "bthome" = ps: with ps; [ aiohttp-cors bleak-retry-connector diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index 42e8a056af5d0..24d59402d2818 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -8,6 +8,8 @@ , ffmpeg-headless , inetutils , nixosTests +, home-assistant +, testers # Look up dependencies of specified components in component-packages.nix , extraComponents ? [ ] @@ -188,7 +190,7 @@ let extraPackagesFile = writeText "home-assistant-packages" (lib.concatMapStringsSep "\n" (pkg: pkg.pname) extraBuildInputs); # Don't forget to run parse-requirements.py after updating - hassVersion = "2022.12.6"; + hassVersion = "2022.12.8"; in python.pkgs.buildPythonApplication rec { pname = "homeassistant"; @@ -205,8 +207,8 @@ in python.pkgs.buildPythonApplication rec { src = fetchFromGitHub { owner = "home-assistant"; repo = "core"; - rev = version; - hash = "sha256-9dukY04sh35kj5vUbNmqnN+MPGqJT/YUuHC64pHzWjw="; + rev = "refs/tags/${version}"; + hash = "sha256-oJwA0YELlgMbnf1XiLDGlMLrvFaLP7WMv9/0KOI4XDI="; }; # leave this in, so users don't have to constantly update their downstream patch handling @@ -359,6 +361,10 @@ in python.pkgs.buildPythonApplication rec { tests = { nixos = nixosTests.home-assistant; components = callPackage ./tests.nix { }; + version = testers.testVersion { + package = home-assistant; + command = "hass --version"; + }; }; }; diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix index 55ff5dbae8de7..e91913798a18a 100644 --- a/pkgs/servers/home-assistant/frontend.nix +++ b/pkgs/servers/home-assistant/frontend.nix @@ -4,7 +4,7 @@ buildPythonPackage rec { # the frontend version corresponding to a specific home-assistant version can be found here # https://github.com/home-assistant/home-assistant/blob/master/homeassistant/components/frontend/manifest.json pname = "home-assistant-frontend"; - version = "20221213.0"; + version = "20221213.1"; format = "wheel"; src = fetchPypi { @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "home_assistant_frontend"; dist = "py3"; python = "py3"; - hash = "sha256-s/rVgsVyNyyW2wvv7IK4/0wy99ZtHn8iZ7tVjOBGozQ="; + hash = "sha256-QL+3dIZlUJstRgK80ANnK9CKR4muvfEQz16bTTMS3Fs="; }; # there is nothing to strip in this package diff --git a/pkgs/servers/http/apache-modules/mod_python/default.nix b/pkgs/servers/http/apache-modules/mod_python/default.nix index 1b8ef94fae95c..1b7a7c31d4beb 100644 --- a/pkgs/servers/http/apache-modules/mod_python/default.nix +++ b/pkgs/servers/http/apache-modules/mod_python/default.nix @@ -1,36 +1,32 @@ -{ lib, stdenv, fetchurl, apacheHttpd, python2, libintl }: +{ lib, stdenv, fetchFromGitHub, apacheHttpd, python3, libintl }: stdenv.mkDerivation rec { pname = "mod_python"; - version = "3.5.0"; + version = "unstable-2022-10-18"; - src = fetchurl { - url = "http://dist.modpython.org/dist/${pname}-${version}.tgz"; - sha256 = "146apll3yfqk05s8fkf4acmxzqncl08bgn4rv0c1rd4qxmc91w0f"; + src = fetchFromGitHub { + owner = "grisha"; + repo = pname; + rev = "d066b07564d2194839eceb535485eb1ba0c292d8"; + hash = "sha256-EH8wrXqUAOFWyPKfysGeiIezgrVc789RYO4AHeSA6t4="; }; patches = [ ./install.patch ]; - postPatch = '' - substituteInPlace dist/version.sh \ - --replace 'GIT=`git describe --always`' "" \ - --replace '-$GIT' "" - ''; - - installFlags = [ "LIBEXECDIR=${placeholder "out"}/modules" ]; - - preInstall = '' - mkdir -p $out/modules $out/bin - ''; + installFlags = [ + "LIBEXECDIR=$(out)/modules" + "BINDIR=$(out)/bin" + ]; passthru = { inherit apacheHttpd; }; - buildInputs = [ apacheHttpd python2 ] + buildInputs = [ apacheHttpd python3 ] ++ lib.optional stdenv.isDarwin libintl; - meta = { + meta = with lib; { homepage = "http://modpython.org/"; description = "An Apache module that embeds the Python interpreter within the server"; - platforms = lib.platforms.unix; + platforms = platforms.unix; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/servers/http/apache-modules/mod_wsgi/default.nix b/pkgs/servers/http/apache-modules/mod_wsgi/default.nix index 7185b1c81270a..497cc5b1ea0ae 100644 --- a/pkgs/servers/http/apache-modules/mod_wsgi/default.nix +++ b/pkgs/servers/http/apache-modules/mod_wsgi/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, apacheHttpd, python, ncurses }: +{ lib, stdenv, fetchFromGitHub, apacheHttpd, python3, ncurses }: stdenv.mkDerivation rec { pname = "mod_wsgi"; @@ -11,14 +11,16 @@ stdenv.mkDerivation rec { hash = "sha256-6rRHdgdTb94kqIpWJOJOwoIsaXb/c4XY3q331GwQyf0="; }; - buildInputs = [ apacheHttpd python ncurses ]; + buildInputs = [ apacheHttpd python3 ncurses ]; - patchPhase = '' - sed -r -i -e "s|^LIBEXECDIR=.*$|LIBEXECDIR=$out/modules|" \ - ${if stdenv.isDarwin then "-e 's|/usr/bin/lipo|lipo|'" else ""} \ - configure + postPatch = '' + substituteInPlace configure --replace '/usr/bin/lipo' 'lipo' ''; + makeFlags = [ + "LIBEXECDIR=$(out)/modules" + ]; + meta = { homepage = "https://github.com/GrahamDumpleton/mod_wsgi"; description = "Host Python applications in Apache through the WSGI interface"; diff --git a/pkgs/servers/http/envoy/default.nix b/pkgs/servers/http/envoy/default.nix index ca2c38c0a1a71..298e05fedb5b3 100644 --- a/pkgs/servers/http/envoy/default.nix +++ b/pkgs/servers/http/envoy/default.nix @@ -24,8 +24,8 @@ let # However, the version string is more useful for end-users. # These are contained in a attrset of their own to make it obvious that # people should update both. - version = "1.23.1"; - rev = "edd69583372955fdfa0b8ca3820dd7312c094e46"; + version = "1.23.3"; + rev = "4801f5881893857fbc53a4061f0b20ef4ca91a5b"; }; in buildBazelPackage rec { @@ -36,7 +36,7 @@ buildBazelPackage rec { owner = "envoyproxy"; repo = "envoy"; inherit (srcVer) rev; - sha256 = "sha256:157dbmp479xv5507n48yibvlgi2ac0l3sl9rzm28cm9lhzwva3k0"; + sha256 = "sha256-akAuFk+jESWWvLRCDQ0XDT1Eplutfj5uacAFQp714vM="; postFetch = '' chmod -R +w $out @@ -83,8 +83,8 @@ buildBazelPackage rec { fetchAttrs = { sha256 = { - x86_64-linux = "10f1lcn8pynqcj2hlz100zbpmawvn0f2hwpcw3m9v6v3fcs2l6pr"; - aarch64-linux = "1na7gna9563mm1y7sy34fh64f1kxz151xn26zigbi9amwcpjbav6"; + x86_64-linux = "sha256-zEebnLFGLUy6UR5Uf2f6s23s6tXYccp5SHzTcldDKwQ="; + aarch64-linux = "sha256-UfowJD9uUBimRbIaSq2US6BpEVDDqSLchSDJ1k0Cfwk="; }.${stdenv.system} or (throw "unsupported system ${stdenv.system}"); dontUseCmakeConfigure = true; dontUseGnConfigure = true; diff --git a/pkgs/servers/http/nginx/generic.nix b/pkgs/servers/http/nginx/generic.nix index 7d301695cac06..06fa12725674e 100644 --- a/pkgs/servers/http/nginx/generic.nix +++ b/pkgs/servers/http/nginx/generic.nix @@ -8,6 +8,7 @@ outer@{ lib, stdenv, fetchurl, fetchpatch, openssl, zlib, pcre, libxml2, libxslt , withStream ? true , withMail ? false , withPerl ? true +, withSlice ? false , modules ? [] , ... }: @@ -18,9 +19,11 @@ outer@{ lib, stdenv, fetchurl, fetchpatch, openssl, zlib, pcre, libxml2, libxslt , src ? null # defaults to upstream nginx ${version} , sha256 ? null # when not specifying src , configureFlags ? [] +, nativeBuildInputs ? [] , buildInputs ? [] , extraPatches ? [] , fixPatch ? p: p +, postPatch ? "" , preConfigure ? "" , postInstall ? "" , meta ? null @@ -48,9 +51,7 @@ assert assertMsg (unique moduleNames == moduleNames) "nginx: duplicate modules: ${concatStringsSep ", " moduleNames}. A common cause for this is that services.nginx.additionalModules adds a module which the nixos module itself already adds."; stdenv.mkDerivation { - inherit pname; - inherit version; - inherit nginxVersion; + inherit pname version nginxVersion; outputs = ["out" "doc"]; @@ -59,6 +60,9 @@ stdenv.mkDerivation { inherit sha256; }; + nativeBuildInputs = [ removeReferencesTo ] + ++ nativeBuildInputs; + buildInputs = [ openssl zlib pcre libxml2 libxslt gd geoip perl ] ++ buildInputs ++ mapModules "inputs"; @@ -106,7 +110,7 @@ stdenv.mkDerivation { "--with-http_perl_module" "--with-perl=${perl}/bin/perl" "--with-perl_modules_path=lib/perl5" - ] + ] ++ optional withSlice "--with-http_slice_module" ++ optional (gd != null) "--with-http_image_filter_module" ++ optional (geoip != null) "--with-http_geoip_module" ++ optional (withStream && geoip != null) "--with-stream_geoip_module" @@ -155,6 +159,8 @@ stdenv.mkDerivation { ] ++ mapModules "patches") ++ extraPatches; + inherit postPatch; + hardeningEnable = optional (!stdenv.isDarwin) "pie"; enableParallelBuilding = true; @@ -164,8 +170,6 @@ stdenv.mkDerivation { cp -r ${nginx-doc}/* $doc ''; - nativeBuildInputs = [ removeReferencesTo ]; - disallowedReferences = map (m: m.src) modules; postInstall = diff --git a/pkgs/servers/http/openresty/default.nix b/pkgs/servers/http/openresty/default.nix index 5c852de5b64aa..433d8fd3969b8 100644 --- a/pkgs/servers/http/openresty/default.nix +++ b/pkgs/servers/http/openresty/default.nix @@ -2,6 +2,7 @@ , runCommand , lib , fetchurl +, perl , postgresql , nixosTests , ... @@ -9,17 +10,17 @@ callPackage ../nginx/generic.nix args rec { pname = "openresty"; - nginxVersion = "1.19.9"; + nginxVersion = "1.21.4"; version = "${nginxVersion}.1"; src = fetchurl { url = "https://openresty.org/download/openresty-${version}.tar.gz"; - sha256 = "1xn1d0x2y63z0mi0qq3js6lz6ziba92r7vyyfkj1qc738vjz8vsp"; + sha256 = "sha256-DFCTtk94IehQZcmeXU5swxggz9fze5oN7IQgnYeir5k="; }; - # generic.nix applies fixPatch on top of every patch defined there. This - # allows updating the patch destination, as openresty has nginx source code - # in a different folder. + # generic.nix applies fixPatch on top of every patch defined there. + # This allows updating the patch destination, as openresty has + # nginx source code in a different folder. fixPatch = patch: let name = patch.name or (builtins.baseNameOf patch); in runCommand "openresty-${name}" { src = patch; } '' @@ -28,14 +29,16 @@ callPackage ../nginx/generic.nix args rec { --replace "b/" "b/bundle/nginx-${nginxVersion}/" ''; - buildInputs = [ postgresql ]; + nativeBuildInputs = [ perl ]; - configureFlags = [ "--with-http_postgres_module" ]; + buildInputs = [ postgresql ]; - preConfigure = '' - patchShebangs . + postPatch = '' + patchShebangs configure bundle/ ''; + configureFlags = [ "--with-http_postgres_module" ]; + postInstall = '' ln -s $out/luajit/bin/luajit-2.1.0-beta3 $out/bin/luajit-openresty ln -s $out/nginx/sbin/nginx $out/bin/nginx diff --git a/pkgs/servers/hydron/default.nix b/pkgs/servers/hydron/default.nix index 03236b4108242..453557d109ac4 100644 --- a/pkgs/servers/hydron/default.nix +++ b/pkgs/servers/hydron/default.nix @@ -1,25 +1,36 @@ -{ lib, buildGoModule, fetchFromGitHub, pkg-config, ffmpeg }: +{ lib +, buildGoModule +, fetchFromGitHub +, gitUpdater +, pkg-config +, ffmpeg +}: buildGoModule rec { pname = "hydron"; - version = "3.3.5"; + version = "3.3.6"; src = fetchFromGitHub { owner = "bakape"; repo = "hydron"; rev = "v${version}"; - sha256 = "0c958dsw5pq9z8n1b9q9j8y6vgiqf6mmlsf77ncb7yrlilhbrz6s"; + hash = "sha256-Q1pZf5FPQw+pHItcZyOGx0N+iHmz9rW0+ANFsketh6E="; }; - vendorSha256 = "0cc8ar8p7lgg6rj76vhfp6bzrxyn5yaqjwj8i1bn0zp6sj6zcfam"; + vendorHash = "sha256-fyGC6k9/xER5GwVelBhy5C5tiq6NMhwSmYjSpvenrfA="; proxyVendor = true; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ ffmpeg ]; + passthru.updateScript = gitUpdater { + rev-prefix = "v"; + }; + meta = with lib; { homepage = "https://github.com/bakape/hydron"; description = "High performance media tagger and organizer"; - license = licenses.lgpl3Plus; + license = with licenses; [ lgpl3Plus ]; maintainers = with maintainers; [ Madouura ]; }; } diff --git a/pkgs/servers/jellyfin/default.nix b/pkgs/servers/jellyfin/default.nix index 4848dcba9f068..1943d107ad0f1 100644 --- a/pkgs/servers/jellyfin/default.nix +++ b/pkgs/servers/jellyfin/default.nix @@ -12,21 +12,6 @@ , sqlite }: -let - os = if stdenv.isDarwin then "osx" else "linux"; - arch = - with stdenv.hostPlatform; - if isx86_32 then "x86" - else if isx86_64 then "x64" - else if isAarch32 then "arm" - else if isAarch64 then "arm64" - else lib.warn "Unsupported architecture, some image processing features might be unavailable" "unknown"; - musl = lib.optionalString stdenv.hostPlatform.isMusl - (lib.warnIf (arch != "x64") "Some image processing features might be unavailable for non x86-64 with Musl" - "musl-"); - # https://docs.microsoft.com/en-us/dotnet/core/rid-catalog#using-rids - runtimeId = "${os}-${musl}${arch}"; -in buildDotnetModule rec { pname = "jellyfin"; version = "10.8.8"; # ensure that jellyfin-web has matching version @@ -57,7 +42,6 @@ buildDotnetModule rec { ]; dotnet-sdk = dotnetCorePackages.sdk_6_0; dotnet-runtime = dotnetCorePackages.aspnetcore_6_0; - dotnetFlags = [ "--runtime=${runtimeId}" ]; dotnetBuildFlags = [ "--no-self-contained" ]; preInstall = '' diff --git a/pkgs/servers/matrix-conduit/default.nix b/pkgs/servers/matrix-conduit/default.nix index a3d4267b259f0..20de61bbc834b 100644 --- a/pkgs/servers/matrix-conduit/default.nix +++ b/pkgs/servers/matrix-conduit/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitLab, rustPlatform, pkg-config, rocksdb }: +{ lib, rustPlatform, fetchFromGitLab, stdenv, darwin, nixosTests }: rustPlatform.buildRustPackage rec { pname = "matrix-conduit"; @@ -15,20 +15,24 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ rustPlatform.bindgenHook - pkg-config ]; - buildInputs = [ - rocksdb + buildInputs = lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security ]; - cargoBuildFlags = [ "--bin" "conduit" ]; + # tests failed on x86_64-darwin with SIGILL: illegal instruction + doCheck = !(stdenv.isx86_64 && stdenv.isDarwin); + + passthru.tests = { + inherit (nixosTests) matrix-conduit; + }; meta = with lib; { - broken = stdenv.isDarwin; description = "A Matrix homeserver written in Rust"; homepage = "https://conduit.rs/"; license = licenses.asl20; maintainers = with maintainers; [ pstn piegames pimeys ]; + mainProgram = "conduit"; }; } diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix index b7a7c85bfc2fc..36a967220602c 100644 --- a/pkgs/servers/matrix-synapse/default.nix +++ b/pkgs/servers/matrix-synapse/default.nix @@ -11,20 +11,20 @@ in with python3.pkgs; buildPythonApplication rec { pname = "matrix-synapse"; - version = "1.73.0"; + version = "1.74.0"; format = "pyproject"; src = fetchFromGitHub { owner = "matrix-org"; repo = "synapse"; rev = "v${version}"; - hash = "sha256-Er5a+0Qyvm5V1ObWjDQ8fs+r/XB+4aRItJMqaz1VSqk="; + hash = "sha256-UsYodjykcLOgClHegqH598kPoGAI1Z8bLzV5LLE6yLg="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-yU72e8OBnUtNdUI/crX7v2KRYHHHOY4Ga9CI3PJwais="; + hash = "sha256-XOW9DRUhGIs8x5tQ9l2A85sNv736uMmfC72f8FX3g/I="; }; postPatch = '' diff --git a/pkgs/servers/minio/default.nix b/pkgs/servers/minio/default.nix index 13c29ac6e3999..c513f0e860b9c 100644 --- a/pkgs/servers/minio/default.nix +++ b/pkgs/servers/minio/default.nix @@ -15,16 +15,16 @@ let in buildGoModule rec { pname = "minio"; - version = "2022-10-24T18-35-07Z"; + version = "2022-12-12T19-27-27Z"; src = fetchFromGitHub { owner = "minio"; repo = "minio"; rev = "RELEASE.${version}"; - sha256 = "sha256-sABNzhyfBNU5pWyE/VWHUzuSyKsx0glj01ectJPakV8="; + sha256 = "sha256-gHtWLCmjzaN1+7x5w9QKjF1pGNZB9mIun2KnvQyVnE4="; }; - vendorSha256 = "sha256-wB3UiuptT6D0CIUlHC1d5k0rjIxNeh5yAWOmYpyLGmA="; + vendorSha256 = "sha256-0ryxdAdixnUbp3kj5KN2CB4t153azfYML75T4ROMoHw="; doCheck = false; diff --git a/pkgs/servers/minio/legacy_fs.nix b/pkgs/servers/minio/legacy_fs.nix new file mode 100644 index 0000000000000..13c29ac6e3999 --- /dev/null +++ b/pkgs/servers/minio/legacy_fs.nix @@ -0,0 +1,51 @@ +{ lib, buildGoModule, fetchFromGitHub, nixosTests }: + +let + # The web client verifies, that the server version is a valid datetime string: + # https://github.com/minio/minio/blob/3a0e7347cad25c60b2e51ff3194588b34d9e424c/browser/app/js/web.js#L51-L53 + # + # Example: + # versionToTimestamp "2021-04-22T15-44-28Z" + # => "2021-04-22T15:44:28Z" + versionToTimestamp = version: + let + splitTS = builtins.elemAt (builtins.split "(.*)(T.*)" version) 1; + in + builtins.concatStringsSep "" [ (builtins.elemAt splitTS 0) (builtins.replaceStrings [ "-" ] [ ":" ] (builtins.elemAt splitTS 1)) ]; +in +buildGoModule rec { + pname = "minio"; + version = "2022-10-24T18-35-07Z"; + + src = fetchFromGitHub { + owner = "minio"; + repo = "minio"; + rev = "RELEASE.${version}"; + sha256 = "sha256-sABNzhyfBNU5pWyE/VWHUzuSyKsx0glj01ectJPakV8="; + }; + + vendorSha256 = "sha256-wB3UiuptT6D0CIUlHC1d5k0rjIxNeh5yAWOmYpyLGmA="; + + doCheck = false; + + subPackages = [ "." ]; + + CGO_ENABLED = 0; + + tags = [ "kqueue" ]; + + ldflags = let t = "github.com/minio/minio/cmd"; in [ + "-s" "-w" "-X ${t}.Version=${versionToTimestamp version}" "-X ${t}.ReleaseTag=RELEASE.${version}" "-X ${t}.CommitID=${src.rev}" + ]; + + passthru.tests.minio = nixosTests.minio; + + meta = with lib; { + homepage = "https://www.minio.io/"; + description = "An S3-compatible object storage server"; + changelog = "https://github.com/minio/minio/releases/tag/RELEASE.${version}"; + maintainers = with maintainers; [ eelco bachp ]; + platforms = platforms.unix; + license = licenses.agpl3Plus; + }; +} diff --git a/pkgs/servers/misc/oven-media-engine/default.nix b/pkgs/servers/misc/oven-media-engine/default.nix index f41dd379f4cb3..0529a2bb07167 100644 --- a/pkgs/servers/misc/oven-media-engine/default.nix +++ b/pkgs/servers/misc/oven-media-engine/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "oven-media-engine"; - version = "0.14.17"; + version = "0.14.18"; src = fetchFromGitHub { owner = "AirenSoft"; repo = "OvenMediaEngine"; rev = "v${version}"; - sha256 = "sha256-vCew+JUBCMeVfXm6Vt5nO59o1/N76Nu8aoygEsouCFE="; + sha256 = "sha256-M204aIFbs2VmwgZbOmkpuyqOfpom/FnKc6noEVMuZfs="; }; sourceRoot = "source/src"; diff --git a/pkgs/servers/monitoring/grafana-agent/default.nix b/pkgs/servers/monitoring/grafana-agent/default.nix index d777e9d2b5a34..8be34d0a7c483 100644 --- a/pkgs/servers/monitoring/grafana-agent/default.nix +++ b/pkgs/servers/monitoring/grafana-agent/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "grafana-agent"; - version = "0.29.0"; + version = "0.30.1"; src = fetchFromGitHub { rev = "v${version}"; owner = "grafana"; repo = "agent"; - sha256 = "sha256-6CnYoUECT6vcQw2v7GLRzOtlL4tKKpz4VADuz9MxseM="; + sha256 = "sha256-QunB14B3HRzB5UL5OZaFsm4WGIOMnByYKblTogVOeHE="; }; - vendorSha256 = "sha256-FSxkldMYMmyjVv6UYeZlceygkfKFzZK2udeUNBbpYnc="; + vendorSha256 = "sha256-Cl3oygH1RPF+ZdJvkDmr7eyU5daxaZwNE8pQOHK/qP4="; ldflags = let prefix = "github.com/grafana/agent/pkg/build"; @@ -27,8 +27,8 @@ buildGoModule rec { tags = [ "nonetwork" - "noebpf" "nodocker" + "promtail_journal_enabled" ]; subPackages = [ diff --git a/pkgs/servers/monitoring/mimir/default.nix b/pkgs/servers/monitoring/mimir/default.nix index bb7153a301a1f..d456fc3a543f5 100644 --- a/pkgs/servers/monitoring/mimir/default.nix +++ b/pkgs/servers/monitoring/mimir/default.nix @@ -1,16 +1,13 @@ -{ lib, buildGoModule, fetchFromGitHub, nixosTests }: -let - pinData = lib.importJSON ./pin.json; -in +{ lib, buildGoModule, fetchFromGitHub, nixosTests, nix-update-script }: buildGoModule rec { pname = "mimir"; - version = pinData.version; + version = "2.5.0"; src = fetchFromGitHub { rev = "${pname}-${version}"; owner = "grafana"; repo = pname; - sha256 = pinData.sha256; + sha256 = "sha256-lyF7ugnNEJug1Vx24ISrtENk6RoIt7H1zaCPYUZbBmM="; }; vendorSha256 = null; @@ -21,7 +18,10 @@ buildGoModule rec { ]; passthru = { - updateScript = ./update.sh; + updateScript = nix-update-script { + attrPath = pname; + extraArgs = [ "--version-regex" "mimir-([0-9.]+)" ]; + }; tests = { inherit (nixosTests) mimir; }; diff --git a/pkgs/servers/monitoring/mimir/pin.json b/pkgs/servers/monitoring/mimir/pin.json deleted file mode 100644 index 52e041745783f..0000000000000 --- a/pkgs/servers/monitoring/mimir/pin.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "version": "mimir-2.5.0", - "sha256": "sha256-lyF7ugnNEJug1Vx24ISrtENk6RoIt7H1zaCPYUZbBmM=" -} diff --git a/pkgs/servers/monitoring/mimir/update.sh b/pkgs/servers/monitoring/mimir/update.sh deleted file mode 100755 index 242767c2ecb2c..0000000000000 --- a/pkgs/servers/monitoring/mimir/update.sh +++ /dev/null @@ -1,25 +0,0 @@ -#!/usr/bin/env nix-shell -#! nix-shell -i oil -p jq sd nix-prefetch-github ripgrep - -# TODO set to `verbose` or `extdebug` once implemented in oil -shopt --set xtrace -# we need failures inside of command subs to get the correct vendorSha256 -shopt --unset inherit_errexit - -const directory = $(dirname $0 | xargs realpath) -const owner = "grafana" -const repo = "mimir" -const latest_rev = $(curl -q https://api.github.com/repos/${owner}/${repo}/releases/latest | \ - jq -r '.tag_name') -const latest_version = $(echo $latest_rev | sd 'v' '') -const current_version = $(jq -r '.version' $directory/pin.json) -if ("$latest_version" === "$current_version") { - echo "$repo is already up-to-date" - return 0 -} else { - const tarball_meta = $(nix-prefetch-github $owner $repo --rev "$latest_rev") - const tarball_hash = "sha256-$(echo $tarball_meta | jq -r '.sha256')" - - jq ".version = \"$latest_version\" | \ - .\"sha256\" = \"$tarball_hash\"" $directory/pin.json | sponge $directory/pin.json -} diff --git a/pkgs/servers/monitoring/prometheus/dmarc-metrics-exporter/default.nix b/pkgs/servers/monitoring/prometheus/dmarc-metrics-exporter/default.nix index 46e81508b4d2b..47c43917ec6ce 100644 --- a/pkgs/servers/monitoring/prometheus/dmarc-metrics-exporter/default.nix +++ b/pkgs/servers/monitoring/prometheus/dmarc-metrics-exporter/default.nix @@ -1,28 +1,28 @@ { lib , python3 +, fetchFromGitHub }: python3.pkgs.buildPythonApplication rec { pname = "dmarc-metrics-exporter"; - version = "0.6.1"; + version = "0.8.0"; disabled = python3.pythonOlder "3.7"; format = "pyproject"; - src = python3.pkgs.fetchPypi { - inherit pname version; - hash = "sha256-VYmSHDde3zLq7NcsX7xp1JYe6x6RKFEravpakIzW390="; + src = fetchFromGitHub { + owner = "jgosmann"; + repo = "dmarc-metrics-exporter"; + rev = "v${version}"; + hash = "sha256-uZCPEUoWNrcSz5qV24eFdZOOxKkoz+Qn6HpELBwOK2I="; }; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'uvicorn = {extras = ["standard"], version = "^0.15.0"}' 'uvicorn = {version = "^0.15.0"}' \ - --replace '"^' '">=' - ''; + pythonRelaxDeps = true; nativeBuildInputs = with python3.pkgs; [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/servers/nosql/eventstore/deps.nix b/pkgs/servers/nosql/eventstore/deps.nix index 01ff5be768c43..ef9cf6f4c6d37 100644 --- a/pkgs/servers/nosql/eventstore/deps.nix +++ b/pkgs/servers/nosql/eventstore/deps.nix @@ -23,8 +23,6 @@ (fetchNuGet { pname = "HdrHistogram"; version = "2.5.0"; sha256 = "1s2np7m3pp17rgambax9a3x5pd2grx74cr325q3xapjz2gd58sj1"; }) (fetchNuGet { pname = "HostStat.NET"; version = "1.0.2"; sha256 = "1khxpp1fy36njjcmikr0xnxk7zv9d3rcnm6f7x2s94agins23hg7"; }) (fetchNuGet { pname = "Jint"; version = "3.0.0-beta-2038"; sha256 = "0gnp5pqsxd9lr7b4i73mpq5lyq16vzn0pr8rcyvnjjf3fanls8kc"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "5.0.12"; sha256 = "1asph5v7kgmscfgsyv9gg7cwvg52gnm6m0ldm2m4pfkpsxqyp2mi"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "5.0.12"; sha256 = "02kv8xh6xvpav7vqj281321ly1imghxcc18cdgadiq8dwgm87xwp"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.TestHost"; version = "5.0.6"; sha256 = "1ps8pdsarm92gxp6ys0haw562v0hk7xvrkqhlm2vy55jghnc58wz"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "16.9.1"; sha256 = "18isx8w4kwnlk6hq5ay8i4lgzwhx0zg9brayfdk2lakagvv6yyaf"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) @@ -67,9 +65,6 @@ (fetchNuGet { pname = "Microsoft.FASTER.Core"; version = "1.9.5"; sha256 = "1vp2644301bsdad0sd20pjqa8lbf1vc8yvd9rkl986h56hgwczsj"; }) (fetchNuGet { pname = "Microsoft.Net.Http.Headers"; version = "2.2.8"; sha256 = "1s0n68z6v5mbys4jjrd4jdxrrz81iq4dzmmbmxzmlf59769x8rj9"; }) (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "16.9.1"; sha256 = "1761mvkp5mwhw150fvazdhh4ybvxpvx05g9znf8n1fqx832wxrw5"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "5.0.12"; sha256 = "0950m6x86jp5dybzakfsp74qzrk4pk8wkazc178v36j14sqmj2zq"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "5.0.12"; sha256 = "1fdbrjrmjd31y1amp0inlmki9w3fwzv8nz41pqmc943g3cpmyg9f"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "5.0.12"; sha256 = "0z8l0gzy9dih0mn5a2rknyph1w73y4m03s250wghym1zp6rz910p"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.1"; sha256 = "164wycgng4mi9zqi2pnsf1pq6gccbqvw6ib916mqizgjmd8f44pj"; }) diff --git a/pkgs/servers/nosql/mongodb/6.0.nix b/pkgs/servers/nosql/mongodb/6.0.nix index ef3aa77278ca0..81d36eb232fa0 100644 --- a/pkgs/servers/nosql/mongodb/6.0.nix +++ b/pkgs/servers/nosql/mongodb/6.0.nix @@ -2,7 +2,7 @@ let buildMongoDB = callPackage ./mongodb.nix { - inherit sasl boost Security CoreFoundation cctools; + inherit sasl boost Security CoreFoundation cctools stdenv; }; in buildMongoDB { diff --git a/pkgs/servers/nosql/mongodb/mongodb.nix b/pkgs/servers/nosql/mongodb/mongodb.nix index f0039a509c150..7be4064dd7f35 100644 --- a/pkgs/servers/nosql/mongodb/mongodb.nix +++ b/pkgs/servers/nosql/mongodb/mongodb.nix @@ -121,14 +121,14 @@ in stdenv.mkDerivation rec { # fix environment variable reading substituteInPlace SConstruct \ --replace "env = Environment(" "env = Environment(ENV = os.environ," - '' + lib.optionalString (versionAtLeast version "4.4" && versionOlder version "4.6") '' + '' + lib.optionalString (versionAtLeast version "4.4") '' # Fix debug gcc 11 and clang 12 builds on Fedora # https://github.com/mongodb/mongo/commit/e78b2bf6eaa0c43bd76dbb841add167b443d2bb0.patch substituteInPlace src/mongo/db/query/plan_summary_stats.h --replace '#include <string>' '#include <optional> #include <string>' substituteInPlace src/mongo/db/exec/plan_stats.h --replace '#include <string>' '#include <optional> #include <string>' - '' + lib.optionalString stdenv.isDarwin '' + '' + lib.optionalString (stdenv.isDarwin && versionOlder version "6.0") '' substituteInPlace src/third_party/mozjs-${variants.mozjsVersion}/extract/js/src/jsmath.cpp --replace '${variants.mozjsReplace}' 0 '' + lib.optionalString (stdenv.isDarwin && versionOlder version "3.6") '' substituteInPlace src/third_party/s2/s1angle.cc --replace drem remainder @@ -197,9 +197,6 @@ in stdenv.mkDerivation rec { inherit license; maintainers = with maintainers; [ bluescreen303 offline cstrahan ]; - platforms = subtractLists systems.doubles.i686 ( - if (versionAtLeast version "6.0") then systems.doubles.linux - else systems.doubles.unix - ); + platforms = subtractLists systems.doubles.i686 systems.doubles.unix; }; } diff --git a/pkgs/servers/onlyoffice-documentserver/default.nix b/pkgs/servers/onlyoffice-documentserver/default.nix index 9955de2f8ae3a..179257f67e37b 100644 --- a/pkgs/servers/onlyoffice-documentserver/default.nix +++ b/pkgs/servers/onlyoffice-documentserver/default.nix @@ -15,11 +15,11 @@ let # var/www/onlyoffice/documentserver/server/DocService/docservice onlyoffice-documentserver = stdenv.mkDerivation rec { pname = "onlyoffice-documentserver"; - version = "7.2.1"; + version = "7.2.2"; src = fetchurl { url = "https://github.com/ONLYOFFICE/DocumentServer/releases/download/v${lib.concatStringsSep "." (lib.take 3 (lib.splitVersion version))}/onlyoffice-documentserver_amd64.deb"; - sha256 = "sha256-V9s7UVz2BcuEObcsT6X2FulBlkz1BX2JM/bs/7vyZvI="; + sha256 = "sha256-4MJLvc2ExIAwGnEkBvMJSINp+7SxOyhtKnNNA9QVxMk="; }; preferLocalBuild = true; diff --git a/pkgs/servers/openvscode-server/default.nix b/pkgs/servers/openvscode-server/default.nix index 4953ac8592c28..e4f558c790b2b 100644 --- a/pkgs/servers/openvscode-server/default.nix +++ b/pkgs/servers/openvscode-server/default.nix @@ -1,12 +1,12 @@ { lib, stdenv, fetchFromGitHub, makeWrapper, runCommand , cacert, moreutils, jq, git, pkg-config, yarn, python3 -, esbuild, nodejs-14_x, libsecret, xorg, ripgrep +, esbuild, nodejs-16_x-openssl_1_1, libsecret, xorg, ripgrep , AppKit, Cocoa, Security, cctools }: let system = stdenv.hostPlatform.system; - nodejs = nodejs-14_x; + nodejs = nodejs-16_x-openssl_1_1; yarn' = yarn.override { inherit nodejs; }; defaultYarnOpts = [ "frozen-lockfile" "non-interactive" "no-progress"]; @@ -27,13 +27,13 @@ let in stdenv.mkDerivation rec { pname = "openvscode-server"; - version = "1.69.2"; + version = "1.73.1"; src = fetchFromGitHub { owner = "gitpod-io"; repo = "openvscode-server"; rev = "openvscode-server-v${version}"; - sha256 = "e2vEEZg2H37oFRN+0kZnWW5RU2ma2JJR66XLFDNEOXc="; + sha256 = "DZWAzNRRRZ/eElwRGvSK7TxstKK6X1Tj+uAxD4SOScQ="; }; yarnCache = stdenv.mkDerivation { @@ -56,16 +56,9 @@ in stdenv.mkDerivation rec { outputHashMode = "recursive"; outputHashAlgo = "sha256"; - outputHash = "sha256-5wOR7rKzGLE8EAlGd4CkrFUsUOEJOdwuNWQzEdbAL+g="; + outputHash = "sha256-7UBXigQj7c+fuHPIM5BbRe02DuL+cs6VbQ/D84Yk8i4="; }; - # Extract the Node.js source code which is used to compile packages with - # native bindings - nodeSources = runCommand "node-sources" {} '' - tar --no-same-owner --no-same-permissions -xf ${nodejs.src} - mv node-* $out - ''; - nativeBuildInputs = [ nodejs yarn' python3 pkg-config makeWrapper git jq moreutils ]; @@ -102,9 +95,9 @@ in stdenv.mkDerivation rec { # set offline mirror to yarn cache we created in previous steps yarn --offline config set yarn-offline-mirror "${yarnCache}" - '' + lib.optionalString stdenv.isLinux '' + # set nodedir, so we can build binaries later - npm config set nodedir "${nodeSources}" + npm config set nodedir "${nodejs}" ''; buildPhase = '' diff --git a/pkgs/servers/peertube/default.nix b/pkgs/servers/peertube/default.nix index ea41f6dda50d6..2f2766945f9e0 100644 --- a/pkgs/servers/peertube/default.nix +++ b/pkgs/servers/peertube/default.nix @@ -6,26 +6,26 @@ let if stdenv.hostPlatform.system == "x86_64-linux" then "linux-x64" else throw "Unsupported architecture: ${stdenv.hostPlatform.system}"; - bcrypt_version = "5.0.1"; + bcrypt_version = "5.1.0"; bcrypt_lib = fetchurl { url = "https://github.com/kelektiv/node.bcrypt.js/releases/download/v${bcrypt_version}/bcrypt_lib-v${bcrypt_version}-napi-v3-${arch}-glibc.tar.gz"; - hash = "sha256-3R3dBZyPansTuM77Nmm3f7BbTDkDdiT2HQIrti2Ottc="; + hash = "sha256-I1ceMi7h6flvKBmMIU1qjAU1S6z5MzguHDul3g1zMKw="; }; in stdenv.mkDerivation rec { pname = "peertube"; - version = "4.3.1"; + version = "5.0.0"; src = fetchFromGitHub { owner = "Chocobozzz"; repo = "PeerTube"; rev = "v${version}"; - hash = "sha256-r3Bi7QLzDKo3/idEY7fYIxTJPULNvAS6hy19Hko2qHE="; + hash = "sha256-Z2l0I/vVEx4ivC87N26QaUnQjySU/XRFW3biEwl7Od0="; }; yarnOfflineCacheServer = fetchYarnDeps { yarnLock = "${src}/yarn.lock"; - hash = "sha256-BimtZpU3aZepvlMfhJ/u0trk1rUsGlzjYk2G90fstII="; + hash = "sha256-EVviTrgSZYsi68hJIlSC9ArQS3aVp6EQNKbkVx12WJk="; }; yarnOfflineCacheTools = fetchYarnDeps { @@ -35,7 +35,7 @@ in stdenv.mkDerivation rec { yarnOfflineCacheClient = fetchYarnDeps { yarnLock = "${src}/client/yarn.lock"; - hash = "sha256-IKMu+gQa+d30+yXjHCu/oQOQXL6kTN9WxDI/Y5IL1E8="; + hash = "sha256-ehA1W1bDXzApTpkWH7MEAQ9Ek73q3En76/LdvJhxh2Q="; }; nativeBuildInputs = [ brotli fixup_yarn_lock jq nodejs which yarn ]; diff --git a/pkgs/servers/pleroma/default.nix b/pkgs/servers/pleroma/default.nix index 233cafcc9e3cc..5503a6a78f33a 100644 --- a/pkgs/servers/pleroma/default.nix +++ b/pkgs/servers/pleroma/default.nix @@ -1,5 +1,5 @@ { lib, beamPackages -, fetchFromGitHub, fetchFromGitLab +, fetchFromGitHub, fetchFromGitLab, fetchHex , file, cmake , libxcrypt , nixosTests, writeText @@ -8,14 +8,14 @@ beamPackages.mixRelease rec { pname = "pleroma"; - version = "2.4.4"; + version = "2.5.0"; src = fetchFromGitLab { domain = "git.pleroma.social"; owner = "pleroma"; repo = "pleroma"; rev = "v${version}"; - sha256 = "sha256-0I1Hh2KDpUsjRe/qwIWhQBMWPr/c2RkUQk/Mxti+6ZU="; + sha256 = "sha256-Pry3eEUvrGUXK+x4et7DMbSxz9Mh/o5L0/Mh728mv1U="; }; stripDebug = false; @@ -24,17 +24,26 @@ beamPackages.mixRelease rec { overrides = (final: prev: { # mix2nix does not support git dependencies yet, # so we need to add them manually + gettext = beamPackages.buildMix rec { + name = "gettext"; + version = "0.19.1"; + + src = fetchFromGitHub { + owner = "tusooa"; + repo = "gettext"; + rev = "72fb2496b6c5280ed911bdc3756890e7f38a4808"; + sha256 = "sha256-V0qmE+LcAbVoWsJmWE4fwrduYFIZ5BzK/sGzgLY3eH0="; + }; + }; prometheus_ex = beamPackages.buildMix rec { name = "prometheus_ex"; version = "3.0.5"; - src = fetchFromGitLab { - domain = "git.pleroma.social"; - group = "pleroma"; - owner = "elixir-libraries"; + src = fetchFromGitHub { + owner = "lanodan"; repo = "prometheus.ex"; - rev = "a4e9beb3c1c479d14b352fd9d6dd7b1f6d7deee5"; - sha256 = "1v0q4bi7sb253i8q016l7gwlv5562wk5zy3l2sa446csvsacnpjk"; + rev = "31f7fbe4b71b79ba27efc2a5085746c4011ceb8f"; + sha256 = "sha256-2PZP+YnwnHt69HtIAQvjMBqBbfdbkRSoMzb1AL2Zsyc="; }; beamDeps = with final; [ prometheus ]; }; @@ -68,20 +77,6 @@ beamPackages.mixRelease rec { }; beamDeps = with final; [ combine plug inet_cidr ]; }; - concurrent_limiter = beamPackages.buildMix rec { - name = "concurrent_limiter"; - version = "0.1.0"; - - src = fetchFromGitLab { - domain = "git.pleroma.social"; - group = "pleroma"; - owner = "elixir-libraries"; - repo = "concurrent_limiter"; - rev = "d81be41024569330f296fc472e24198d7499ba78"; - sha256 = "1nci8zz1gy7dnvxf5ydjqbagf4g9f7z5x1v9kdyy7jz9f37z6qw9"; - }; - beamDeps = with final; [ telemetry ]; - }; prometheus_phx = beamPackages.buildMix rec { name = "prometheus_phx"; version = "0.1.1"; @@ -99,36 +94,18 @@ beamPackages.mixRelease rec { }; beamDeps = with final; [ prometheus_ex ]; }; - majic = beamPackages.buildMix rec { - name = "majic"; - version = "1.0.0"; - - src = fetchFromGitLab { - domain = "git.pleroma.social"; - group = "pleroma"; - owner = "elixir-libraries"; - repo = "majic"; - rev = "289cda1b6d0d70ccb2ba508a2b0bd24638db2880"; - sha256 = "15605lsdd74bmsp5z96f76ihn7m2g3p1hjbhs2x7v7309n1k108n"; - }; - patchPhase = '' - substituteInPlace lib/majic/server.ex --replace "erlang.now" "erlang.time" - ''; + majic = prev.majic.override { buildInputs = [ file ]; - - beamDeps = with final; [ nimble_pool mime plug elixir_make ]; }; crypt = beamPackages.buildRebar3 rec { name = "crypt"; - version = "0.4.3"; + version = "1.0.0"; - src = fetchFromGitLab { - domain = "git.pleroma.social"; - group = "pleroma"; - owner = "elixir-libraries"; + src = fetchFromGitHub { + owner = "msantos"; repo = "crypt"; - rev = "cf2aa3f11632e8b0634810a15b3e612c7526f6a3"; - sha256 = "sha256-48QIsgyEaDzvnihdsFy7pYURLFcb9G8DXIrf5Luk3zo="; + rev = "f75cd55325e33cbea198fb41fe41871392f8fb76"; + sha256 = "sha256-ZYhZTe7cTITkl8DZ4z2IOlxTX5gnbJImu/lVJ2ZjR1o="; }; postInstall = "mv $out/lib/erlang/lib/crypt-${version}/priv/{source,crypt}.so"; @@ -137,17 +114,6 @@ beamPackages.mixRelease rec { buildInputs = [ libxcrypt ]; }; - web_push_encryption = beamPackages.buildMix rec { - name = "web_push_encryption"; - version = "0.3.0"; - src = fetchFromGitHub { - owner = "lanodan"; - repo = "elixir-web-push-encryption"; - rev = "026a043037a89db4da8f07560bc8f9c68bcf0cc0"; - sha256 = "0a4x6njqp8v579bc965c9ipsr1z3klrc0pvgj8x1xf69r77gs6sj"; - }; - beamDeps = with final; [ httpoison jose ]; - }; # Some additional build inputs and build fixes http_signatures = prev.http_signatures.override { @@ -182,6 +148,19 @@ beamPackages.mixRelease rec { beamDeps = with final; [ p1_utils ]; }; + # Required by eimp + p1_utils = beamPackages.buildRebar3 rec { + name = "p1_utils"; + version = "1.0.18"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "120znzz0yw1994nk6v28zql9plgapqpv51n9g6qm6md1f4x7gj0z"; + }; + + beamDeps = []; + }; mime = prev.mime.override { patchPhase = let diff --git a/pkgs/servers/pleroma/mix.nix b/pkgs/servers/pleroma/mix.nix index 4f57f0eadfbdf..9bd4619bd795e 100644 --- a/pkgs/servers/pleroma/mix.nix +++ b/pkgs/servers/pleroma/mix.nix @@ -34,19 +34,6 @@ let beamDeps = [ custom_base ]; }; - base64url = buildRebar3 rec { - name = "base64url"; - version = "0.0.1"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "1yf1m1587vd9l6w4x5b36g4kxrxqfpwbqk2l4mkqinzmwch9pc7s"; - }; - - beamDeps = []; - }; - bbcode_pleroma = buildMix rec { name = "bbcode_pleroma"; version = "0.2.0"; @@ -88,12 +75,12 @@ let bunt = buildMix rec { name = "bunt"; - version = "0.2.0"; + version = "0.2.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0lw3v9kwbbcy1v6ygziiky887gffwwmxvyg4r1v0zm71kzhcgxbs"; + sha256 = "19bp6xh052ql3ha0v3r8999cvja5d2p6cph02mxphfaj4jsbyc53"; }; beamDeps = []; @@ -127,12 +114,12 @@ let castore = buildMix rec { name = "castore"; - version = "0.1.10"; + version = "0.1.18"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0r96zwva2g6q59vyar8swaka0vxx27xfpf17xar2ss25rgh190x4"; + sha256 = "01kawrhxcc0i7zkygss5ia8hmkzv39q4bnrwnf0fz0mpa9jazfv1"; }; beamDeps = []; @@ -140,12 +127,12 @@ let certifi = buildRebar3 rec { name = "certifi"; - version = "2.8.0"; + version = "2.9.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1slp20z2fgcq9p2bbdp1gj218kjqpx5jsa95sq40nq7qqv0yziva"; + sha256 = "0ha6vmf5p3xlbf5w1msa89frhvfk535rnyfybz9wdmh6vdms8v96"; }; beamDeps = []; @@ -177,6 +164,19 @@ let beamDeps = []; }; + concurrent_limiter = buildMix rec { + name = "concurrent_limiter"; + version = "0.1.1"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "1sqnb987qwwy4ip7kxh9g7vv5wz61fpv3pbnxpbv9yy073r8z5jk"; + }; + + beamDeps = [ telemetry ]; + }; + connection = buildMix rec { name = "connection"; version = "1.1.0"; @@ -203,6 +203,19 @@ let beamDeps = [ plug ]; }; + covertool = buildRebar3 rec { + name = "covertool"; + version = "2.0.4"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "1p0c1n3nl4063xwi1sv176l1x68xqf07qwvj444a5z888fx6i5aw"; + }; + + beamDeps = []; + }; + cowboy = buildErlangMk rec { name = "cowboy"; version = "2.9.0"; @@ -218,12 +231,12 @@ let cowboy_telemetry = buildRebar3 rec { name = "cowboy_telemetry"; - version = "0.3.1"; + version = "0.4.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1bzhcdq12p837cii2jgvzjyrffiwgm5bsb1pra2an3hkcqrzsvis"; + sha256 = "1pn90is3k9dq64wbijvzkqb6ldfqvwiqi7ymc8dx6ra5xv0vm63x"; }; beamDeps = [ cowboy telemetry ]; @@ -244,12 +257,12 @@ let credo = buildMix rec { name = "credo"; - version = "1.5.5"; + version = "1.6.7"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1pj7h9fk3i3rhxs65z8d64nwbnddhqj0dwy9bn2nm5cif2mj71nx"; + sha256 = "1lvxzksdrc2lbl0rzrww4q5rmayf37q0phcpz2kyvxq7n2zi1qa1"; }; beamDeps = [ bunt file_system jason ]; @@ -283,12 +296,12 @@ let db_connection = buildMix rec { name = "db_connection"; - version = "2.4.0"; + version = "2.4.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1j6psw0dxq1175b6zcqpm6vavv4n6sv72ji57l8b6qczmlhnqhdd"; + sha256 = "0s1nx1gi96r8g7x8y7cklz8z823a6llh4fk996i5xxcr3flkrrag"; }; beamDeps = [ connection telemetry ]; @@ -322,12 +335,12 @@ let earmark = buildMix rec { name = "earmark"; - version = "1.4.15"; + version = "1.4.18"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1vlrk5zmx1v5jnkkmchxwns8yy1kclzkcz0g6xpmiwy9bfw0j4iv"; + sha256 = "0q15ypgdr94z425dxb3blp6wqzrphsg1b6wscsfd13lmldnkpb2p"; }; beamDeps = [ earmark_parser ]; @@ -335,12 +348,12 @@ let earmark_parser = buildMix rec { name = "earmark_parser"; - version = "1.4.13"; + version = "1.4.17"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1fhlh9bnph5nqdhy7w69xzb7lra1b3v16mk4yb947bx0ydmc40nn"; + sha256 = "08r06hp1wwfbfpalqqxwpq9lsd42pwvmhjr6bcb1r9pckyfchfpr"; }; beamDeps = []; @@ -348,12 +361,12 @@ let eblurhash = buildRebar3 rec { name = "eblurhash"; - version = "1.1.0"; + version = "1.2.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "07dmkbyafpxffh8ar6af4riqfxiqc547rias7i73gpgx16fqhsrf"; + sha256 = "0k040pj8hlm8mwy0ra459hk35v9gfsvvgp596nl27q2dj00cl84c"; }; beamDeps = []; @@ -361,12 +374,12 @@ let ecto = buildMix rec { name = "ecto"; - version = "3.6.2"; + version = "3.9.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0kl893yi9jxzxnpd5gafivzazn96z2q24y04lfw8dyg60kxnvbgg"; + sha256 = "05cxg8rq6rawmn8ryfks5hj7h9b4k9bxxsn7k8l5b7p0fx8nsii1"; }; beamDeps = [ decimal jason telemetry ]; @@ -385,14 +398,27 @@ let beamDeps = [ ecto ecto_sql postgrex ]; }; + ecto_psql_extras = buildMix rec { + name = "ecto_psql_extras"; + version = "0.7.4"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "1ra9jh2p1jp1hn4g7aynivbrj52y9c20aspmqw6ksbkp3cpv079i"; + }; + + beamDeps = [ ecto_sql postgrex table_rex ]; + }; + ecto_sql = buildMix rec { name = "ecto_sql"; - version = "3.6.2"; + version = "3.9.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0syv5wjdkywaxx9mmps0x9sdawqp3nnakbnf7av3ksj2yzkdgjay"; + sha256 = "0lv4b45j0bja98q0qhlp97a7zvb0g7x2bgkqr721m2rv0whggwx8"; }; beamDeps = [ db_connection ecto postgrex telemetry ]; @@ -424,40 +450,40 @@ let beamDeps = []; }; - esshd = buildMix rec { - name = "esshd"; - version = "0.1.1"; + esbuild = buildMix rec { + name = "esbuild"; + version = "0.5.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "10cryiv674p2mn9gvncl9j3rzgv0523chz9q6sm91lq960g38gnp"; + sha256 = "1rgzjjb0j3m0xz8gs112dydfz7m5brlpfm2qmz7w8qyr6ars10zi"; }; - beamDeps = []; + beamDeps = [ castore ]; }; - eternal = buildMix rec { - name = "eternal"; - version = "1.2.2"; + esshd = buildMix rec { + name = "esshd"; + version = "0.1.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "10p7m6kv2z2c16gw36wgiwnkykss4lfkmm71llxp09ipkhmy77rc"; + sha256 = "10cryiv674p2mn9gvncl9j3rzgv0523chz9q6sm91lq960g38gnp"; }; beamDeps = []; }; - ex2ms = buildMix rec { - name = "ex2ms"; - version = "1.5.0"; + eternal = buildMix rec { + name = "eternal"; + version = "1.2.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "13vh9yrs60cifqxzw52n6xxdp174w704vm1ks45k4avrzla763b7"; + sha256 = "10p7m6kv2z2c16gw36wgiwnkykss4lfkmm71llxp09ipkhmy77rc"; }; beamDeps = []; @@ -541,27 +567,14 @@ let beamDeps = [ poison syslog ]; }; - excoveralls = buildMix rec { - name = "excoveralls"; - version = "0.12.3"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "1nnsr9dv7mybcxx3y5p2gqzyy3p479w21c55vvsq6hi6dihkx2jn"; - }; - - beamDeps = [ hackney jason ]; - }; - fast_html = buildMix rec { name = "fast_html"; - version = "2.0.4"; + version = "2.0.5"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1sk1fwib6x5isb3sy8g5i6gw0n6pfqrza12r89gas0pw3ma9vd1v"; + sha256 = "01k51qri44535b1hwixlxk7151vph6vapswlfq918g245544ypv0"; }; beamDeps = [ elixir_make nimble_pool ]; @@ -593,6 +606,19 @@ let beamDeps = []; }; + finch = buildMix rec { + name = "finch"; + version = "0.10.2"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0l3mvf0jnh49rj58vj1051fvsj6294wjhlh8ycpfqb07har132yx"; + }; + + beamDeps = [ castore mint nimble_options nimble_pool telemetry ]; + }; + flake_id = buildMix rec { name = "flake_id"; version = "0.1.0"; @@ -632,45 +658,6 @@ let beamDeps = []; }; - gen_stage = buildMix rec { - name = "gen_stage"; - version = "0.14.3"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "0xld8m2l9a7pbzmq7vp0r9mz4pkisrjpslgbjs9ikhwlkllf4lw4"; - }; - - beamDeps = []; - }; - - gen_state_machine = buildMix rec { - name = "gen_state_machine"; - version = "2.0.5"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "1j21ih8cm0kkirjd2dh0gcxhngf5h3dvv4gqw6khj9ibww2x9b2w"; - }; - - beamDeps = []; - }; - - gettext = buildMix rec { - name = "gettext"; - version = "0.18.2"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "1igmn69xzj5wpkblg3k9v7wa2fjc2j0cncwx0grk1pag7nqkgxgr"; - }; - - beamDeps = []; - }; - gun = buildRebar3 rec { name = "gun"; version = "2.0.0-rc.2"; @@ -686,51 +673,51 @@ let hackney = buildRebar3 rec { name = "hackney"; - version = "1.18.0"; + version = "1.18.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0pjwbf87nqj2ki3i076whrswh2cdhklj6cbaikdj1mq40xidmz4s"; + sha256 = "13hja14kig5jnzcizpdghj68i88f0yd9wjdfjic9nzi98kzxmv54"; }; beamDeps = [ certifi idna metrics mimerl parse_trans ssl_verify_fun unicode_util_compat ]; }; - html_entities = buildMix rec { - name = "html_entities"; - version = "0.5.2"; + hpax = buildMix rec { + name = "hpax"; + version = "0.1.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1k7xyj0q38ms3n5hbn782pa6w1vgd6biwlxr4db6319l828a6fy5"; + sha256 = "04wci9ifsfyd2pbcrnpgh2aq0a8fi1lpkrzb91kz3x93b8yq91rc"; }; beamDeps = []; }; - html_sanitize_ex = buildMix rec { - name = "html_sanitize_ex"; - version = "1.3.0"; + html_entities = buildMix rec { + name = "html_entities"; + version = "0.5.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1mhr2jnyzrqv0298m6vghnc9v2iwck11kwfhyh07gmc8v0x3kyxb"; + sha256 = "1k7xyj0q38ms3n5hbn782pa6w1vgd6biwlxr4db6319l828a6fy5"; }; - beamDeps = [ mochiweb ]; + beamDeps = []; }; http_signatures = buildMix rec { name = "http_signatures"; - version = "0.1.0"; + version = "0.1.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "097q5jffswcaav40i8dhlds6hgdhsz53yd3fz8w7vl9z3rrv79zq"; + sha256 = "18s2b5383xl2qjijkxag4mvwk2p5kv2fw58c9ii7pk12fc08lfyc"; }; beamDeps = []; @@ -777,12 +764,12 @@ let jason = buildMix rec { name = "jason"; - version = "1.2.2"; + version = "1.4.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0y91s7q8zlfqd037c1mhqdhrvrf60l4ax7lzya1y33h5y3sji8hq"; + sha256 = "0891p2yrg3ri04p302cxfww3fi16pvvw1kh4r91zg85jhl87k8vr"; }; beamDeps = [ decimal ]; @@ -827,30 +814,30 @@ let beamDeps = []; }; - libring = buildMix rec { - name = "libring"; - version = "1.4.0"; + linkify = buildMix rec { + name = "linkify"; + version = "0.5.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "10bvf64jkviyyyff12hlhq4p2439gphyvmya8z85m0c6x1gg1shz"; + sha256 = "11mbbqm7yi6rhza5d2hd4fxkhdy3ik5n7sybj0n9bn0q09lsqwcd"; }; beamDeps = []; }; - linkify = buildMix rec { - name = "linkify"; - version = "0.5.1"; + majic = buildMix rec { + name = "majic"; + version = "1.0.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0i7r9z49sdxs7nrnh2igmwzzmq9ih4fm02a046klmnps49z8q4m3"; + sha256 = "17hab8kmqc6gsiqicfgsaik0rvmakb6mbshlbxllj3b5fs7qa1br"; }; - beamDeps = []; + beamDeps = [ elixir_make mime nimble_pool plug ]; }; makeup = buildMix rec { @@ -944,6 +931,19 @@ let beamDeps = []; }; + mint = buildMix rec { + name = "mint"; + version = "1.4.2"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "106x9nmzi4ji5cqaddn76pxiyxdihk12z2qgszcdgd2rrjxsaxff"; + }; + + beamDeps = [ castore hpax ]; + }; + mochiweb = buildRebar3 rec { name = "mochiweb"; version = "2.18.0"; @@ -972,12 +972,12 @@ let mogrify = buildMix rec { name = "mogrify"; - version = "0.7.4"; + version = "0.9.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1hwry2498qflc4g7fdwmxmzb2l0gr5c814ggzddwjsxsgwrrxmsh"; + sha256 = "01bzbfd0c932acnla5s3b5f9gvyyiwi0rgs815f15lipjccdykhk"; }; beamDeps = []; @@ -996,6 +996,19 @@ let beamDeps = []; }; + nimble_options = buildMix rec { + name = "nimble_options"; + version = "0.4.0"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0bd0pi3sij9vxhiilv25x6n3jls75g3b38rljvm1x896ycd1qw76"; + }; + + beamDeps = []; + }; + nimble_parsec = buildMix rec { name = "nimble_parsec"; version = "0.5.0"; @@ -1011,12 +1024,12 @@ let nimble_pool = buildMix rec { name = "nimble_pool"; - version = "0.1.0"; + version = "0.2.6"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1ygkr9ddzd3msif7hkqd75q27zlryhm9zww3191z7p0dcam1wfil"; + sha256 = "0gv59waa505mz2gi956sj1aa6844c65w2dp2qh2jfgsx15am0w8w"; }; beamDeps = []; @@ -1024,12 +1037,12 @@ let oban = buildMix rec { name = "oban"; - version = "2.3.4"; + version = "2.13.4"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1prgpp7v03lgkia63j60jz3ds479ymm4991f882iizaq8x1s0367"; + sha256 = "097isyz3mlix1qkazsgbhgvx6sp02rvs2xdviy9dgqh9nj16zlm7"; }; beamDeps = [ ecto_sql jason postgrex telemetry ]; @@ -1048,19 +1061,6 @@ let beamDeps = [ jason plug poison ]; }; - p1_utils = buildRebar3 rec { - name = "p1_utils"; - version = "1.0.18"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "120znzz0yw1994nk6v28zql9plgapqpv51n9g6qm6md1f4x7gj0z"; - }; - - beamDeps = []; - }; - parse_trans = buildRebar3 rec { name = "parse_trans"; version = "3.3.1"; @@ -1089,25 +1089,25 @@ let phoenix = buildMix rec { name = "phoenix"; - version = "1.5.9"; + version = "1.6.15"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0za2fpplmdq3axwng8736h6vz9wzlifhxy8apcgjy0bwlqhcwjvy"; + sha256 = "0wh6s8id3b4c4hgiawq995p192wxsws4sr4bm1g7b55kyvxvj2np"; }; - beamDeps = [ jason phoenix_html phoenix_pubsub plug plug_cowboy plug_crypto telemetry ]; + beamDeps = [ castore jason phoenix_pubsub phoenix_view plug plug_cowboy plug_crypto telemetry ]; }; phoenix_ecto = buildMix rec { name = "phoenix_ecto"; - version = "4.2.1"; + version = "4.4.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1h23fy3pylaszh3l2zafq1a7fjwlwb3yw7dy09p0mb4wi6p1p2j7"; + sha256 = "1h9wnjmxns8y8dsr0r41ks66gscaqm7ivk4gsh5y07nkiralx1h9"; }; beamDeps = [ ecto phoenix_html plug ]; @@ -1115,25 +1115,64 @@ let phoenix_html = buildMix rec { name = "phoenix_html"; - version = "2.14.3"; + version = "3.2.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "03z8r285znlg25yi47d4l59s7jq58y4dnhvbxgp16npkzykrgmpg"; + sha256 = "0ky5idgid1psz6hmh2b2kmj6n974axww74hrxwv02p6jasx9gv1n"; }; beamDeps = [ plug ]; }; + phoenix_live_dashboard = buildMix rec { + name = "phoenix_live_dashboard"; + version = "0.6.2"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0ywfqndxhjwx0pxv381p2rj5xzbaxvy248s41c1bba1ciarwdijv"; + }; + + beamDeps = [ ecto ecto_psql_extras mime phoenix_live_view telemetry_metrics ]; + }; + + phoenix_live_reload = buildMix rec { + name = "phoenix_live_reload"; + version = "1.3.3"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "1b5blinpmzdgspgk0dsy01bfjwwnhikb1gfiwnx8smazdrkrcrvn"; + }; + + beamDeps = [ file_system phoenix ]; + }; + + phoenix_live_view = buildMix rec { + name = "phoenix_live_view"; + version = "0.17.5"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "1qxhb1lw68vkz6h7q6ki0502pklfxgsx8sf72j11pxsd7mm6wn65"; + }; + + beamDeps = [ jason phoenix phoenix_html telemetry ]; + }; + phoenix_pubsub = buildMix rec { name = "phoenix_pubsub"; - version = "2.0.0"; + version = "2.1.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0wgpa19l6xar0k2m117iz2kq3cw433llp07sqswpf5969y698bf5"; + sha256 = "1nfqrmbrq45if9pgk6g6vqiply2sxc40is3bfanphn7a3rnpqdl1"; }; beamDeps = []; @@ -1141,15 +1180,41 @@ let phoenix_swoosh = buildMix rec { name = "phoenix_swoosh"; - version = "0.3.3"; + version = "1.1.0"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0gbwv2ffbxh8afsvdd221lhmpcijjjxls9zkzn060jwszl5g30ma"; + }; + + beamDeps = [ finch hackney phoenix phoenix_html phoenix_view swoosh ]; + }; + + phoenix_template = buildMix rec { + name = "phoenix_template"; + version = "1.0.0"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0ms39n5s6kh532s20yxzj7sh0rz5lslh09ibq5j21lkglacny1hv"; + }; + + beamDeps = [ phoenix_html ]; + }; + + phoenix_view = buildMix rec { + name = "phoenix_view"; + version = "2.0.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1k81cvhbzbc3czvin45j1rqagzp7drk3s0rp2xa5clz06bm0qm2a"; + sha256 = "1xm6p2r0rmspqax83s6rzqwx5gvbamy8cjwi533l3wy5xwn8wdbc"; }; - beamDeps = [ hackney phoenix phoenix_html swoosh ]; + beamDeps = [ phoenix_html phoenix_template ]; }; plug = buildMix rec { @@ -1167,25 +1232,25 @@ let plug_cowboy = buildMix rec { name = "plug_cowboy"; - version = "2.5.0"; + version = "2.6.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "06p7rmx01fknkf0frvjjaqs3qsz6066aa41qyd378n72lljqjb2v"; + sha256 = "19jgv5dm53hv5aqgxxzr3fnrpgfll9ics199swp6iriwfl5z4g07"; }; - beamDeps = [ cowboy cowboy_telemetry plug telemetry ]; + beamDeps = [ cowboy cowboy_telemetry plug ]; }; plug_crypto = buildMix rec { name = "plug_crypto"; - version = "1.2.2"; + version = "1.2.3"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1nxnxj62iv4yvm4771jbxpj3l4brn2crz053y12s998lv5x1qqw7"; + sha256 = "18plj2idhp3f0nmqyjjf2rzj849l3br0797m8ln20p5dqscj0rxm"; }; beamDeps = []; @@ -1232,12 +1297,12 @@ let postgrex = buildMix rec { name = "postgrex"; - version = "0.15.9"; + version = "0.16.5"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1vmd63vxwz8knid424b0rbp200vj7q7rz3xp98yj5cjc7q81j1v1"; + sha256 = "1s5jbwfzsdsyvlwgx3bqlfwilj2c468wi3qxq0c2d23fvhwxdspd"; }; beamDeps = [ connection db_connection decimal jason ]; @@ -1256,6 +1321,19 @@ let beamDeps = []; }; + prom_ex = buildMix rec { + name = "prom_ex"; + version = "1.7.1"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "027dlv89wl35wy0lbl7xf7308j42c42ls3ssj8rri4lap1r8i5sc"; + }; + + beamDeps = [ ecto finch jason oban phoenix phoenix_live_view plug plug_cowboy telemetry telemetry_metrics telemetry_metrics_prometheus_core telemetry_poller ]; + }; + prometheus = buildMix rec { name = "prometheus"; version = "4.8.0"; @@ -1308,19 +1386,6 @@ let beamDeps = [ accept plug prometheus_ex ]; }; - quack = buildMix rec { - name = "quack"; - version = "0.1.1"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "0hr5ppds4a9vih14hzs3lfj07r5069w8ifr7022fn4j18jkvydnp"; - }; - - beamDeps = [ poison tesla ]; - }; - ranch = buildRebar3 rec { name = "ranch"; version = "1.8.0"; @@ -1388,15 +1453,15 @@ let swoosh = buildMix rec { name = "swoosh"; - version = "1.3.11"; + version = "1.8.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1bqkp41sh4h0q5yjmk0ywf5x979rwxshz16gp619jks5vd4a1qpi"; + sha256 = "1nxpcwq7ynvqjp65z544dvdfw7jx9k0m58w4kb0bdbdg1rsvln6h"; }; - beamDeps = [ cowboy gen_smtp hackney jason mime plug_cowboy ]; + beamDeps = [ cowboy ex_aws finch gen_smtp hackney jason mime plug_cowboy telemetry ]; }; syslog = buildRebar3 rec { @@ -1412,30 +1477,82 @@ let beamDeps = []; }; + table_rex = buildMix rec { + name = "table_rex"; + version = "3.1.1"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "141404hwnwnpspvhs112j2la8dfnvkwr0xy14ff42w6nljmj72k7"; + }; + + beamDeps = []; + }; + telemetry = buildRebar3 rec { name = "telemetry"; - version = "0.4.3"; + version = "1.0.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0hc0fr2bh97wah9ycpm7hb5jdqr5hnl1s3b2ibbbx9gxbwvbhwpb"; + sha256 = "0yn5mr83hrx0dslsqxmfr5zf0a65hdak6926zd72i85lb7x0kg3k"; }; beamDeps = []; }; + telemetry_metrics = buildMix rec { + name = "telemetry_metrics"; + version = "0.6.1"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "1iilk2n75kn9i95fdp8mpxvn3rcn3ghln7p77cijqws13j3y1sbv"; + }; + + beamDeps = [ telemetry ]; + }; + + telemetry_metrics_prometheus_core = buildMix rec { + name = "telemetry_metrics_prometheus_core"; + version = "1.0.2"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0c5pfm0jbri0x7p6cryif0b0h2iy0jqk4hmljz4kh3pqaq6ilda8"; + }; + + beamDeps = [ telemetry telemetry_metrics ]; + }; + + telemetry_poller = buildRebar3 rec { + name = "telemetry_poller"; + version = "1.0.0"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "0vjgxkxn9ll1gc6xd8jh4b0ldmg9l7fsfg7w63d44gvcssplx8mk"; + }; + + beamDeps = [ telemetry ]; + }; + tesla = buildMix rec { name = "tesla"; - version = "1.4.1"; + version = "1.4.4"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "06i0rshkm1byzgsphbr3al4hns7bcrpl1rxy8lwlp31cj8sxxxcm"; + sha256 = "0mv48vgby1fv9b2npc0ird3y4isr10np3a3yas3v5hfyz54kll6m"; }; - beamDeps = [ castore gun hackney jason mime poison telemetry ]; + beamDeps = [ castore finch gun hackney jason mime mint poison telemetry ]; }; timex = buildMix rec { @@ -1516,6 +1633,19 @@ let beamDeps = []; }; + web_push_encryption = buildMix rec { + name = "web_push_encryption"; + version = "0.3.1"; + + src = fetchHex { + pkg = "${name}"; + version = "${version}"; + sha256 = "18p2f1gqkg209vf3nychjxy7xpxhgiwyhn4halvr7yr2fvjv50jg"; + }; + + beamDeps = [ httpoison jose ]; + }; + websockex = buildMix rec { name = "websockex"; version = "0.4.3"; @@ -1530,3 +1660,4 @@ let }; }; in self + diff --git a/pkgs/servers/pocketbase/default.nix b/pkgs/servers/pocketbase/default.nix index 8859b8c7e11ea..ae3825c3907da 100644 --- a/pkgs/servers/pocketbase/default.nix +++ b/pkgs/servers/pocketbase/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "pocketbase"; - version = "0.9.2"; + version = "0.10.1"; src = fetchFromGitHub { owner = "pocketbase"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Z+FZ5AtxgO+tCB9HHZhyttXt8LXbCi/6tG8WkNRuhgk="; + sha256 = "sha256-IFyiopURkza22VYW5VM23hZ+GAKr+ykxn7r/MyQfGAI="; }; - vendorSha256 = "sha256-AQX4O25PR0icR0Llz66t+2AdJm58RDimhOO5NBMRu7s="; + vendorSha256 = "sha256-5iT67xJ9pH/QhkMTKvYIU0NsMWg6KVum+trNyt2a2rg="; # This is the released subpackage from upstream repo subPackages = [ "examples/base" ]; diff --git a/pkgs/servers/rtsp-simple-server/default.nix b/pkgs/servers/rtsp-simple-server/default.nix index 4f7805fc82201..fc6f97d49881f 100644 --- a/pkgs/servers/rtsp-simple-server/default.nix +++ b/pkgs/servers/rtsp-simple-server/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "rtsp-simple-server"; - version = "0.20.3"; + version = "0.21.0"; src = fetchFromGitHub { owner = "aler9"; repo = pname; rev = "v${version}"; - hash = "sha256-InuOHVhqh/MWBzE5xSQLP1/WWI/ayVFqOlA1ZjgNyVE="; + hash = "sha256-iLNdl6V+px/ri9uJzOrxktxJYqAJA5JWBd18ZHSLQjQ="; }; - vendorSha256 = "sha256-Egv9MCGSMd8RWjcXFKSU7LuoRgVwxiwzeSso9cuZ+ds="; + vendorSha256 = "sha256-48i0hsAho4dI79a/i24GlKAaC/yNGKt0uA+qCy5QTok="; # Tests need docker doCheck = false; diff --git a/pkgs/servers/sabnzbd/default.nix b/pkgs/servers/sabnzbd/default.nix index 03d754eca7333..531a2e31a4b24 100644 --- a/pkgs/servers/sabnzbd/default.nix +++ b/pkgs/servers/sabnzbd/default.nix @@ -24,14 +24,14 @@ let ]); path = lib.makeBinPath [ par2cmdline unrar unzip p7zip ]; in stdenv.mkDerivation rec { - version = "3.7.0"; + version = "3.7.1"; pname = "sabnzbd"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-ngsNDxK3J8acrVqxtEnfoqEOhNsQemOcuaf3ru3eQMw="; + sha256 = "sha256-Zzqqh/3ijOTVVm5ksmsHY4LOL034VXHeZ7XsEg8cxY0="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/ser2net/default.nix b/pkgs/servers/ser2net/default.nix index f518531f668de..47c7dc1831b4b 100644 --- a/pkgs/servers/ser2net/default.nix +++ b/pkgs/servers/ser2net/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "ser2net"; - version = "4.3.8"; + version = "4.3.11"; src = fetchFromGitHub { owner = "cminyard"; repo = pname; rev = "v${version}"; - hash = "sha256-lJI7TPzV1beZFN6SinjdJ1HqlVX61aWZ281rf3AFpNk="; + hash = "sha256-5Jo6wwxRwf6JbpG7vEGpEBFA9b0v7DqbfpvgETHHhpY="; }; passthru = { diff --git a/pkgs/servers/sql/mariadb/galera/default.nix b/pkgs/servers/sql/mariadb/galera/default.nix index 0c6c085866e33..f76f9ea32a02f 100644 --- a/pkgs/servers/sql/mariadb/galera/default.nix +++ b/pkgs/servers/sql/mariadb/galera/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "mariadb-galera"; - version = "26.4.12"; + version = "26.4.13"; src = fetchFromGitHub { owner = "codership"; repo = "galera"; rev = "release_${version}"; - sha256 = "sha256-1Jw99Eo8xhCNLd2XHm9M6DatzBl0w5VvgUahvKs4glg="; + sha256 = "sha256-Jg7RMAwxAYjMcAweBig6Eb0rGcFhjiZbq+xNuQA3bho="; fetchSubmodules = true; }; diff --git a/pkgs/servers/sql/postgresql/ext/timescaledb.nix b/pkgs/servers/sql/postgresql/ext/timescaledb.nix index 2f857b1e8d23d..4c612c8b8e9f2 100644 --- a/pkgs/servers/sql/postgresql/ext/timescaledb.nix +++ b/pkgs/servers/sql/postgresql/ext/timescaledb.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { pname = "timescaledb"; - version = "2.8.1"; + version = "2.9.0"; nativeBuildInputs = [ cmake ]; buildInputs = [ postgresql openssl libkrb5 ]; @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { owner = "timescale"; repo = "timescaledb"; rev = version; - sha256 = "sha256-2ayWm1lXR1rgDHdpKO0gMJzGRag95qVPU7jSCJRtar0="; + sha256 = "sha256-N/syMGr4NUiiP8J3cD7yhJW8nuYsTBSsuFYHdNeb16Y="; }; cmakeFlags = [ "-DSEND_TELEMETRY_DEFAULT=OFF" "-DREGRESS_CHECKS=OFF" "-DTAP_CHECKS=OFF" ] diff --git a/pkgs/servers/static-web-server/default.nix b/pkgs/servers/static-web-server/default.nix new file mode 100644 index 0000000000000..492f323d3845a --- /dev/null +++ b/pkgs/servers/static-web-server/default.nix @@ -0,0 +1,34 @@ +{ lib, rustPlatform, fetchFromGitHub, stdenv, darwin }: + +rustPlatform.buildRustPackage rec { + pname = "static-web-server"; + version = "2.14.1"; + + src = fetchFromGitHub { + owner = "static-web-server"; + repo = pname; + rev = "v${version}"; + sha256 = "1x9l39yf65a8ji8x84h583s82hlj6s99gj0fsm4sh2l4i8yrq2yb"; + }; + + cargoSha256 = "sha256-Ox1mHjeBprxmuqPIVxeTXDyFcEuipSJ7UjXZjcLElIs="; + + buildInputs = lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + ]; + + checkFlags = [ + # TODO: investigate why these tests fail + "--skip=tests::handle_byte_ranges_if_range_too_old" + "--skip=tests::handle_not_modified" + "--skip=handle_precondition" + ]; + + meta = with lib; { + description = "An asynchronus web server for static files-serving"; + homepage = "https://sws.joseluisq.net"; + changelog = "https://github.com/static-web-server/static-web-server/blob/v${version}/CHANGELOG.md"; + license = with licenses; [ mit /* or */ asl20 ]; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/servers/sunshine/default.nix b/pkgs/servers/sunshine/default.nix index 93eccb74eab04..dedd9daf675be 100644 --- a/pkgs/servers/sunshine/default.nix +++ b/pkgs/servers/sunshine/default.nix @@ -1,6 +1,8 @@ { lib , stdenv , fetchFromGitHub +, autoPatchelfHook +, buildNpmPackage , cmake , avahi , libevdev @@ -17,25 +19,53 @@ , libffi , libcap , mesa +, curl +, libva +, libvdpau +, numactl , cudaSupport ? false , cudaPackages ? {} }: stdenv.mkDerivation rec { pname = "sunshine"; - version = "0.15.0"; + version = "0.16.0"; src = fetchFromGitHub { owner = "LizardByte"; repo = "Sunshine"; rev = "v${version}"; - sha256 = "sha256-/eekvpjopCivb2FJqh5W1G54GznLwdjk8ANOosdfuxw="; + sha256 = "sha256-o489IPza1iLoe74Onn2grP5oeNy0ZYdrvBoMEWlbwCE="; fetchSubmodules = true; }; + # remove pre-built ffmpeg; use ffmpeg from nixpkgs + patches = [ ./ffmpeg.diff ]; + + # fetch node_modules needed for webui + ui = buildNpmPackage { + inherit src version; + pname = "sunshine-ui"; + sourceRoot = "source/src_assets/common/assets/web"; + npmDepsHash = "sha256-fg/turcpPMHUs6GBwSoJl4Pxua/lGfCA1RzT1R5q53M="; + + dontNpmBuild = true; + + # use generated package-lock.json upstream does not provide one + postPatch = '' + cp ${./package-lock.json} ./package-lock.json + ''; + + installPhase = '' + mkdir -p $out + cp -r node_modules $out/ + ''; + }; + nativeBuildInputs = [ cmake pkg-config + autoPatchelfHook ] ++ lib.optionals cudaSupport [ cudaPackages.autoAddOpenGLRunpathHook ]; @@ -59,11 +89,22 @@ stdenv.mkDerivation rec { libevdev libcap libdrm + curl + libva + libvdpau + numactl mesa ] ++ lib.optionals cudaSupport [ cudaPackages.cudatoolkit ]; + runtimeDependencies = [ + avahi + mesa + xorg.libXrandr + libxcb + ]; + CXXFLAGS = [ "-Wno-format-security" ]; @@ -72,18 +113,7 @@ stdenv.mkDerivation rec { ]; cmakeFlags = [ - "-D" "FFMPEG_LIBRARIES=${ffmpeg-full}/lib" - "-D" "FFMPEG_INCLUDE_DIRS=${ffmpeg-full}/include" - "-D" "LIBAVCODEC_INCLUDE_DIR=${ffmpeg-full}/include" - "-D" "LIBAVCODEC_LIBRARIES=${ffmpeg-full}/lib/libavcodec.so" - "-D" "LIBAVDEVICE_INCLUDE_DIR=${ffmpeg-full}/include" - "-D" "LIBAVDEVICE_LIBRARIES=${ffmpeg-full}/lib/libavdevice.so" - "-D" "LIBAVFORMAT_INCLUDE_DIR=${ffmpeg-full}/include" - "-D" "LIBAVFORMAT_LIBRARIES=${ffmpeg-full}/lib/libavformat.so" - "-D" "LIBAVUTIL_INCLUDE_DIR=${ffmpeg-full}/include" - "-D" "LIBAVUTIL_LIBRARIES=${ffmpeg-full}/lib/libavutil.so" - "-D" "LIBSWSCALE_LIBRARIES=${ffmpeg-full}/lib/libswscale.so" - "-D" "LIBSWSCALE_INCLUDE_DIR=${ffmpeg-full}/include" + "-Wno-dev" ]; postPatch = '' @@ -91,20 +121,17 @@ stdenv.mkDerivation rec { substituteInPlace CMakeLists.txt \ --replace 'set(Boost_USE_STATIC_LIBS ON)' '# set(Boost_USE_STATIC_LIBS ON)' \ --replace '/usr/include/libevdev-1.0' '${libevdev}/include/libevdev-1.0' + ''; - # fix libgbm path - substituteInPlace src/platform/linux/graphics.cpp \ - --replace 'handle = dyn::handle({ "libgbm.so.1", "libgbm.so" });' 'handle = dyn::handle({ "${mesa}/lib/libgbm.so.1", "${mesa}/lib/libgbm.so" });' - - # fix avahi path - substituteInPlace src/platform/linux/publish.cpp \ - --replace 'handle = dyn::handle({ "libavahi-client.so.3", "libavahi-client.so" });' 'handle = dyn::handle({ "${avahi}/lib/libavahi-client.so.3", "${avahi}/lib/libavahi-client.so" });' \ - --replace 'handle = dyn::handle({ "libavahi-common.so.3", "libavahi-common.so" });' 'handle = dyn::handle({ "${avahi}/lib/libavahi-common.so.3", "${avahi}/lib/libavahi-common.so" });' + preBuild = '' + # copy node_modules where they can be picked up by build + mkdir -p ../src_assets/common/assets/web/node_modules + cp -r ${ui}/node_modules/* ../src_assets/common/assets/web/node_modules ''; meta = with lib; { description = "Sunshine is a Game stream host for Moonlight."; - homepage = "https://docs.lizardbyte.dev/projects/sunshine/"; + homepage = "https://github.com/LizardByte/Sunshine"; license = licenses.gpl3Only; maintainers = with maintainers; [ devusb ]; platforms = platforms.linux; diff --git a/pkgs/servers/sunshine/ffmpeg.diff b/pkgs/servers/sunshine/ffmpeg.diff new file mode 100644 index 0000000000000..66fd6c9c15dd2 --- /dev/null +++ b/pkgs/servers/sunshine/ffmpeg.diff @@ -0,0 +1,49 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index fad60ef..64b68ae 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -212,6 +212,8 @@ else() + set(WAYLAND_FOUND OFF) + endif() + ++ find_package(FFMPEG REQUIRED) ++ + if(X11_FOUND) + add_compile_definitions(SUNSHINE_BUILD_X11) + include_directories(${X11_INCLUDE_DIR}) +@@ -372,35 +374,6 @@ set(SUNSHINE_TARGET_FILES + + set_source_files_properties(src/upnp.cpp PROPERTIES COMPILE_FLAGS -Wno-pedantic) + +-# Pre-compiled binaries +-if(WIN32) +- set(FFMPEG_PREPARED_BINARIES "${CMAKE_CURRENT_SOURCE_DIR}/third-party/ffmpeg-windows-x86_64") +- set(FFMPEG_PLATFORM_LIBRARIES mfplat ole32 strmiids mfuuid) +-elseif(APPLE) +- set(FFMPEG_PREPARED_BINARIES "${CMAKE_CURRENT_SOURCE_DIR}/third-party/ffmpeg-macos-x86_64") +-else() +- if (CMAKE_SYSTEM_PROCESSOR STREQUAL "aarch64") +- set(FFMPEG_PREPARED_BINARIES "${CMAKE_CURRENT_SOURCE_DIR}/third-party/ffmpeg-linux-aarch64") +- else() +- set(FFMPEG_PREPARED_BINARIES "${CMAKE_CURRENT_SOURCE_DIR}/third-party/ffmpeg-linux-x86_64") +- endif() +- set(FFMPEG_PLATFORM_LIBRARIES va va-drm va-x11 vdpau X11) +-endif() +-set(FFMPEG_INCLUDE_DIRS +- ${FFMPEG_PREPARED_BINARIES}/include) +-if(EXISTS ${FFMPEG_PREPARED_BINARIES}/lib/libhdr10plus.a) +- set(HDR10_PLUS_LIBRARY +- ${FFMPEG_PREPARED_BINARIES}/lib/libhdr10plus.a) +-endif() +-set(FFMPEG_LIBRARIES +- ${FFMPEG_PREPARED_BINARIES}/lib/libavcodec.a +- ${FFMPEG_PREPARED_BINARIES}/lib/libavutil.a +- ${FFMPEG_PREPARED_BINARIES}/lib/libswscale.a +- ${FFMPEG_PREPARED_BINARIES}/lib/libx264.a +- ${FFMPEG_PREPARED_BINARIES}/lib/libx265.a +- ${HDR10_PLUS_LIBRARY} +- ${FFMPEG_PLATFORM_LIBRARIES}) +- + include_directories( + ${CMAKE_CURRENT_SOURCE_DIR} + ${CMAKE_CURRENT_SOURCE_DIR}/third-party diff --git a/pkgs/servers/sunshine/package-lock.json b/pkgs/servers/sunshine/package-lock.json new file mode 100644 index 0000000000000..34102859f3e5b --- /dev/null +++ b/pkgs/servers/sunshine/package-lock.json @@ -0,0 +1,74 @@ +{ + "name": "web", + "lockfileVersion": 2, + "requires": true, + "packages": { + "": { + "dependencies": { + "@fortawesome/fontawesome-free": "6.2.0", + "bootstrap": "5.0.0", + "vue": "2.6.12" + } + }, + "node_modules/@fortawesome/fontawesome-free": { + "version": "6.2.0", + "resolved": "https://registry.npmjs.org/@fortawesome/fontawesome-free/-/fontawesome-free-6.2.0.tgz", + "integrity": "sha512-CNR7qRIfCwWHNN7FnKUniva94edPdyQzil/zCwk3v6k4R6rR2Fr8i4s3PM7n/lyfPA6Zfko9z5WDzFxG9SW1uQ==", + "hasInstallScript": true, + "engines": { + "node": ">=6" + } + }, + "node_modules/@popperjs/core": { + "version": "2.11.6", + "resolved": "https://registry.npmjs.org/@popperjs/core/-/core-2.11.6.tgz", + "integrity": "sha512-50/17A98tWUfQ176raKiOGXuYpLyyVMkxxG6oylzL3BPOlA6ADGdK7EYunSa4I064xerltq9TGXs8HmOk5E+vw==", + "peer": true, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/popperjs" + } + }, + "node_modules/bootstrap": { + "version": "5.0.0", + "resolved": "https://registry.npmjs.org/bootstrap/-/bootstrap-5.0.0.tgz", + "integrity": "sha512-tmhPET9B9qCl8dCofvHeiIhi49iBt0EehmIsziZib65k1erBW1rHhj2s/2JsuQh5Pq+xz2E9bEbzp9B7xHG+VA==", + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/bootstrap" + }, + "peerDependencies": { + "@popperjs/core": "^2.9.2" + } + }, + "node_modules/vue": { + "version": "2.6.12", + "resolved": "https://registry.npmjs.org/vue/-/vue-2.6.12.tgz", + "integrity": "sha512-uhmLFETqPPNyuLLbsKz6ioJ4q7AZHzD8ZVFNATNyICSZouqP2Sz0rotWQC8UNBF6VGSCs5abnKJoStA6JbCbfg==" + } + }, + "dependencies": { + "@fortawesome/fontawesome-free": { + "version": "6.2.0", + "resolved": "https://registry.npmjs.org/@fortawesome/fontawesome-free/-/fontawesome-free-6.2.0.tgz", + "integrity": "sha512-CNR7qRIfCwWHNN7FnKUniva94edPdyQzil/zCwk3v6k4R6rR2Fr8i4s3PM7n/lyfPA6Zfko9z5WDzFxG9SW1uQ==" + }, + "@popperjs/core": { + "version": "2.11.6", + "resolved": "https://registry.npmjs.org/@popperjs/core/-/core-2.11.6.tgz", + "integrity": "sha512-50/17A98tWUfQ176raKiOGXuYpLyyVMkxxG6oylzL3BPOlA6ADGdK7EYunSa4I064xerltq9TGXs8HmOk5E+vw==", + "peer": true + }, + "bootstrap": { + "version": "5.0.0", + "resolved": "https://registry.npmjs.org/bootstrap/-/bootstrap-5.0.0.tgz", + "integrity": "sha512-tmhPET9B9qCl8dCofvHeiIhi49iBt0EehmIsziZib65k1erBW1rHhj2s/2JsuQh5Pq+xz2E9bEbzp9B7xHG+VA==", + "requires": {} + }, + "vue": { + "version": "2.6.12", + "resolved": "https://registry.npmjs.org/vue/-/vue-2.6.12.tgz", + "integrity": "sha512-uhmLFETqPPNyuLLbsKz6ioJ4q7AZHzD8ZVFNATNyICSZouqP2Sz0rotWQC8UNBF6VGSCs5abnKJoStA6JbCbfg==" + } + } +} diff --git a/pkgs/servers/syncstorage-rs/default.nix b/pkgs/servers/syncstorage-rs/default.nix index e0b836ae851dd..359dbfb5979dd 100644 --- a/pkgs/servers/syncstorage-rs/default.nix +++ b/pkgs/servers/syncstorage-rs/default.nix @@ -21,13 +21,13 @@ in rustPlatform.buildRustPackage rec { pname = "syncstorage-rs"; - version = "0.12.5"; + version = "0.13.1"; src = fetchFromGitHub { owner = "mozilla-services"; repo = pname; rev = version; - hash = "sha256-rayJvJ8+y1mw2BEKuaZqGnsIqtVKgBoFkINntRLtTLs="; + hash = "sha256-aRLTuP5He8rHsi4Qw+CptyGhp2JdQwL/jLNmHUPcYBU="; }; nativeBuildInputs = [ @@ -43,11 +43,11 @@ rustPlatform.buildRustPackage rec { ]; preFixup = '' - wrapProgram $out/bin/syncstorage \ + wrapProgram $out/bin/syncserver \ --prefix PATH : ${lib.makeBinPath [ pyFxADeps ]} ''; - cargoSha256 = "sha256-FUWyR2mfXHyQ/WdyyV4/pIniBV9pr80WwpFA4c8D1UY="; + cargoSha256 = "sha256-95wK0jFbuu1xFacOAJFAQitm/tlvMUIny2As49QukQE="; buildFeatures = [ "grpcio/openssl" ]; @@ -59,5 +59,6 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/mozilla-services/syncstorage-rs"; license = lib.licenses.mpl20; maintainers = with lib.maintainers; [ pennae ]; + platforms = lib.platforms.linux; }; } diff --git a/pkgs/servers/tailscale/default.nix b/pkgs/servers/tailscale/default.nix index 6b2710b7ba285..bc4faf6a39a03 100644 --- a/pkgs/servers/tailscale/default.nix +++ b/pkgs/servers/tailscale/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "tailscale"; - version = "1.34.0"; + version = "1.34.1"; src = fetchFromGitHub { owner = "tailscale"; repo = "tailscale"; rev = "v${version}"; - sha256 = "sha256-ngcFoEDec/6I9gWpJ767ju2OvZfS4RhlSbK//xXIFxs="; + sha256 = "sha256-C+Ae90mDzMwnBlKpr3ysdGypo4UaqRfSMfOl3zcuKRE="; }; vendorSha256 = "sha256-nSllDi6G4QAGyuoGduDhI0vaVuN2//eg+gXRSZ3ERiQ="; diff --git a/pkgs/servers/tarantool/default.nix b/pkgs/servers/tarantool/default.nix new file mode 100644 index 0000000000000..a6762135554e9 --- /dev/null +++ b/pkgs/servers/tarantool/default.nix @@ -0,0 +1,54 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, zlib +, openssl +, c-ares +, readline +, icu +, git +, gbenchmark +, nghttp2 +}: + +stdenv.mkDerivation rec { + pname = "tarantool"; + version = "2.10.4"; + + src = fetchFromGitHub { + owner = "tarantool"; + repo = pname; + rev = version; + sha256 = "sha256-yCRU5IxC6gNS+O2KYtKWjFk35EHkBnnzWy5UnyuB9f4="; + fetchSubmodules = true; + }; + + buildInputs = [ + nghttp2 + git + readline + icu + zlib + openssl + c-ares + ]; + + checkInputs = [ gbenchmark ]; + + nativeBuildInputs = [ cmake ]; + + cmakeFlags = [ + "-DCMAKE_BUILD_TYPE=RelWithDebInfo" + "-DENABLE_DIST=ON" + "-DTARANTOOL_VERSION=${version}.builtByNix" # expects the commit hash as well + ]; + + meta = with lib; { + description = "An in-memory computing platform consisting of a database and an application server"; + homepage = "https://www.tarantool.io/"; + license = licenses.bsd2; + mainProgram = "tarantool"; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/servers/tvheadend/default.nix b/pkgs/servers/tvheadend/default.nix index 98069c8023855..72945ffaedbbd 100644 --- a/pkgs/servers/tvheadend/default.nix +++ b/pkgs/servers/tvheadend/default.nix @@ -1,33 +1,47 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, makeWrapper, pkg-config -, avahi, dbus, gettext, git, gnutar, gzip, bzip2, ffmpeg_4, libiconv, openssl, python2 -, v4l-utils, which, zlib }: +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch + +# buildtime +, makeWrapper +, pkg-config +, python3 +, which + +# runtime +, avahi +, bzip2 +, dbus +, dtv-scan-tables +, ffmpeg +, gettext +, gnutar +, gzip +, libiconv +, openssl +, uriparser +, zlib +}: let version = "4.2.8"; - - dtv-scan-tables = stdenv.mkDerivation { - pname = "dtv-scan-tables"; - version = "2020-05-18"; - src = fetchFromGitHub { - owner = "tvheadend"; - repo = "dtv-scan-tables"; - rev = "e3138a506a064f6dfd0639d69f383e8e576609da"; - sha256 = "19ac9ds3rfc2xrqcywsbd1iwcpv7vmql7gp01iikxkzcgm2g2b6w"; - }; - nativeBuildInputs = [ v4l-utils ]; - installFlags = [ "DATADIR=$(out)" ]; - }; in stdenv.mkDerivation { pname = "tvheadend"; inherit version; src = fetchFromGitHub { - owner = "tvheadend"; - repo = "tvheadend"; - rev = "v${version}"; + owner = "tvheadend"; + repo = "tvheadend"; + rev = "v${version}"; sha256 = "1xq059r2bplaa0nd0wkhw80jfwd962x0h5hgd7fz2yp6largw34m"; }; + outputs = [ + "out" + "man" + ]; + patches = [ # Pull upstream fix for -fno-common toolchain # https://github.com/tvheadend/tvheadend/pull/1342 @@ -39,27 +53,51 @@ in stdenv.mkDerivation { }) ]; + nativeBuildInputs = [ + makeWrapper + pkg-config + python3 + which + ]; + buildInputs = [ - avahi dbus gettext git gnutar gzip bzip2 ffmpeg_4 libiconv openssl python2 - which zlib + avahi + bzip2 + dbus + ffmpeg + gettext + gzip + libiconv + openssl + uriparser + zlib ]; - nativeBuildInputs = [ cmake makeWrapper pkg-config ]; + enableParallelBuilding = true; - NIX_CFLAGS_COMPILE = [ "-Wno-error=format-truncation" "-Wno-error=stringop-truncation" ]; + NIX_CFLAGS_COMPILE = [ + "-Wno-error=format-truncation" + "-Wno-error=stringop-truncation" + ]; - # disable dvbscan, as having it enabled causes a network download which - # cannot happen during build. We now include the dtv-scan-tables ourselves configureFlags = [ + # disable dvbscan, as having it enabled causes a network download which + # cannot happen during build. We now include the dtv-scan-tables ourselves "--disable-dvbscan" "--disable-bintray_cache" "--disable-ffmpeg_static" + # incompatible with our libhdhomerun version "--disable-hdhomerun_client" "--disable-hdhomerun_static" + "--disable-libx264_static" + "--disable-libx265_static" + "--disable-libvpx_static" + "--disable-libtheora_static" + "--disable-libvorbis_static" + "--disable-libfdkaac_static" + "--disable-libmfx_static" ]; - dontUseCmakeConfigure = true; - preConfigure = '' patchShebangs ./configure @@ -80,13 +118,14 @@ in stdenv.mkDerivation { ''; meta = with lib; { - description = "TV streaming server"; + description = "TV streaming server and digital video recorder"; longDescription = '' - Tvheadend is a TV streaming server and recorder for Linux, FreeBSD and Android - supporting DVB-S, DVB-S2, DVB-C, DVB-T, ATSC, IPTV, SAT>IP and HDHomeRun as input sources. - Tvheadend offers the HTTP (VLC, MPlayer), HTSP (Kodi, Movian) and SAT>IP streaming.''; + Tvheadend is a TV streaming server for Linux supporting DVB-S, + DVB-S2, DVB-C, DVB-T, ATSC, IPTV,SAT>IP and other formats + through the unix pipe as input sources. + ''; homepage = "https://tvheadend.org"; - license = licenses.gpl3; + license = licenses.gpl3Only; platforms = platforms.unix; maintainers = with maintainers; [ simonvandel ]; }; diff --git a/pkgs/servers/uxplay/default.nix b/pkgs/servers/uxplay/default.nix index 40e67a4818a50..8d128971a5522 100644 --- a/pkgs/servers/uxplay/default.nix +++ b/pkgs/servers/uxplay/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "uxplay"; - version = "1.59"; + version = "1.60"; src = fetchFromGitHub { owner = "FDH2"; repo = "UxPlay"; rev = "v${version}"; - sha256 = "sha256-A56ks9E59FLka8/u9OYzSvMeCz1nZxeoNqZ0ITu0Vhg="; + sha256 = "sha256-ERHn6kd/ZAo34iums2dudAqh9CdwUv2dLcn2YC7oBM0="; }; postPatch = '' diff --git a/pkgs/servers/x11/xorg/xwayland.nix b/pkgs/servers/x11/xorg/xwayland.nix index 22e224013617f..ae30254614492 100644 --- a/pkgs/servers/x11/xorg/xwayland.nix +++ b/pkgs/servers/x11/xorg/xwayland.nix @@ -43,11 +43,11 @@ stdenv.mkDerivation rec { pname = "xwayland"; - version = "22.1.6"; + version = "22.1.7"; src = fetchurl { url = "mirror://xorg/individual/xserver/${pname}-${version}.tar.xz"; - sha256 = "sha256-nkJD8D0A/RJDWu4520zhBx/EeG/8UlR+igemWrVbDnw="; + sha256 = "sha256-1Tr6xscZU/XPZtA9KJ2s2JYdpb0wnB3/El1ZVdnbX3Y="; }; depsBuildBuild = [ diff --git a/pkgs/shells/fzf-git-sh/default.nix b/pkgs/shells/fzf-git-sh/default.nix new file mode 100644 index 0000000000000..598c2d0eb0b2e --- /dev/null +++ b/pkgs/shells/fzf-git-sh/default.nix @@ -0,0 +1,64 @@ +{ stdenv +, lib +, bash +, bat +, coreutils +, fetchFromGitHub +, findutils +, fzf +, gawk +, git +, gnugrep +, gnused +, tmux +, util-linux +, xdg-utils +}: + +stdenv.mkDerivation rec { + pname = "fzf-git-sh"; + version = "unstable-2022-09-30"; + + src = fetchFromGitHub { + owner = "junegunn"; + repo = "fzf-git.sh"; + rev = "9190e1bf7273d85f435fa759a5c3b20e588e9f7e"; + sha256 = "sha256-2CGjk1oTXip+eAJMuOk/X3e2KTwfwzcKTcGToA2xPd4="; + }; + + dontBuild = true; + + postPatch = '' + sed -i \ + -e "s,\bawk\b,${gawk}/bin/awk," \ + -e "s,\bbash\b,${bash}/bin/bash," \ + -e "s,\bbat\b,${bat}/bin/bat," \ + -e "s,\bcat\b,${coreutils}/bin/cat," \ + -e "s,\bcut\b,${coreutils}/bin/cut," \ + -e "s,\bhead\b,${coreutils}/bin/head," \ + -e "s,\buniq\b,${coreutils}/bin/uniq," \ + -e "s,\bcolumn\b,${util-linux}/bin/column," \ + -e "s,\bfzf-tmux\b,${fzf}/bin/fzf-tmux," \ + -e "/display-message/!s,\bgit\b,${git}/bin/git,g" \ + -e "s,\bgrep\b,${gnugrep}/bin/grep," \ + -e "s,\bsed\b,${gnused}/bin/sed," \ + -e "/fzf-tmux/!s,\btmux\b,${tmux}/bin/tmux," \ + -e "s,\bxargs\b,${findutils}/bin/xargs," \ + -e "s,\bxdg-open\b,${xdg-utils}/bin/xdg-open," \ + -e "s,__fzf_git=.*BASH_SOURCE.*,__fzf_git=$out/share/${pname}/fzf-git.sh," \ + -e "/__fzf_git=.*readlink.*/d" \ + fzf-git.sh + ''; + + installPhase = '' + install -D fzf-git.sh $out/share/${pname}/fzf-git.sh + ''; + + meta = with lib; { + homepage = "https://github.com/junegunn/fzf-git.sh"; + description = "Bash and zsh key bindings for Git objects, powered by fzf"; + license = licenses.mit; + maintainers = with maintainers; [ deejayem ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/shells/nushell/default.nix b/pkgs/shells/nushell/default.nix index 11c9aa67a2e24..1885a40d4c4d4 100644 --- a/pkgs/shells/nushell/default.nix +++ b/pkgs/shells/nushell/default.nix @@ -21,30 +21,21 @@ , withExtraFeatures ? true , testers , nushell +, nix-update-script }: rustPlatform.buildRustPackage rec { pname = "nushell"; - version = "0.72.1"; + version = "0.73.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-OVJr+usN+47yBHFAy94rIVlU2F+Klo6xdrV2MwUoKUE="; + sha256 = "sha256-hxcB5nzhVjsC5XYR4Pt3GN4ZEgWpetQQZr0mj3bAnRc="; }; - patches = [ - # https://github.com/nushell/nushell/pull/7423: make tests - # more resilient (less dependent on env). - # Already merged upstream, so can be dropped in the next version - (fetchpatch { - url = "https://github.com/nushell/nushell/commit/87631e7068bfc6635d5b31413856f0a791994527.patch"; - hash = "sha256-9vrcmBe5gXLLodynb3jyarwi/a0YiurJ6WsDxXl2vjo="; - }) - ]; - - cargoSha256 = "sha256-v6mPr+gOT64rKYuog+hS7/AqUZDailoOBXX3Sfeo+sk="; + cargoSha256 = "sha256-pw+pBZeXuKSaP/qC3aiauXAH/BRR1rQZ2jVVmR1JQhU="; # enable pkg-config feature of zstd cargoPatches = [ ./zstd-pkg-config.patch ]; @@ -99,5 +90,8 @@ rustPlatform.buildRustPackage rec { tests.version = testers.testVersion { package = nushell; }; + updateScript = nix-update-script { + attrPath = pname; + }; }; } diff --git a/pkgs/shells/tcsh/default.nix b/pkgs/shells/tcsh/default.nix index 8ca3eb5a9ee1b..0c2384ef4596a 100644 --- a/pkgs/shells/tcsh/default.nix +++ b/pkgs/shells/tcsh/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "tcsh"; - version = "6.24.00"; + version = "6.24.06"; src = fetchurl { url = "mirror://tcsh/${pname}-${version}.tar.gz"; - hash = "sha256-YL4sUEvY8fpuQksZVkldfnztUqKslNtf0n9La/yPdPA="; + hash = "sha256-qM0M0d3JT4cGgcy9CaNREFDppx5f6ZorAHlB9eGyt6U="; }; strictDeps = true; diff --git a/pkgs/test/cc-wrapper/default.nix b/pkgs/test/cc-wrapper/default.nix index b483372dea04f..6fd7d9f45db87 100644 --- a/pkgs/test/cc-wrapper/default.nix +++ b/pkgs/test/cc-wrapper/default.nix @@ -1,13 +1,14 @@ -{ lib, stdenv, glibc }: +{ lib, stdenv, glibc, buildPackages }: let # Sanitizers are not supported on Darwin. # Sanitizer headers aren't available in older libc++ stdenvs due to a bug - sanitizersWorking = !stdenv.hostPlatform.isMusl && ( + sanitizersWorking = (stdenv.buildPlatform == stdenv.hostPlatform) && !stdenv.isDarwin && !stdenv.hostPlatform.isMusl && ( (stdenv.cc.isClang && lib.versionAtLeast (lib.getVersion stdenv.cc.name) "5.0.0") || (stdenv.cc.isGNU && stdenv.isLinux) ); staticLibc = lib.optionalString (stdenv.hostPlatform.libc == "glibc") "-L ${glibc.static}/lib"; + emulator = stdenv.hostPlatform.emulator buildPackages; in stdenv.mkDerivation { name = "cc-wrapper-test"; @@ -17,28 +18,28 @@ in stdenv.mkDerivation { printf "checking whether compiler builds valid C binaries... " >&2 $CC -o cc-check ${./cc-main.c} - ./cc-check + ${emulator} ./cc-check printf "checking whether compiler builds valid C++ binaries... " >&2 $CXX -o cxx-check ${./cxx-main.cc} - ./cxx-check + ${emulator} ./cxx-check ${lib.optionalString (stdenv.isDarwin && stdenv.cc.isClang) '' printf "checking whether compiler can build with CoreFoundation.framework... " >&2 mkdir -p foo/lib $CC -framework CoreFoundation -o core-foundation-check ${./core-foundation-main.c} - ./core-foundation-check + ${emulator} ./core-foundation-check ''} ${lib.optionalString (!stdenv.isDarwin) '' printf "checking whether compiler builds valid static C binaries... " >&2 $CC ${staticLibc} -static -o cc-static ${./cc-main.c} - ./cc-static + ${emulator} ./cc-static ${lib.optionalString (stdenv.cc.isGNU && lib.versionAtLeast (lib.getVersion stdenv.cc.name) "8.0.0") '' printf "checking whether compiler builds valid static pie C binaries... " >&2 $CC ${staticLibc} -static-pie -o cc-static-pie ${./cc-main.c} - ./cc-static-pie + ${emulator} ./cc-static-pie ''} ''} @@ -46,7 +47,7 @@ in stdenv.mkDerivation { mkdir -p foo/include cp ${./foo.c} foo/include/foo.h NIX_CFLAGS_COMPILE="-Ifoo/include -DVALUE=42" $CC -o cflags-check ${./cflags-main.c} - ./cflags-check + ${emulator} ./cflags-check printf "checking whether compiler uses NIX_LDFLAGS... " >&2 mkdir -p foo/lib @@ -57,20 +58,20 @@ in stdenv.mkDerivation { ${./foo.c} NIX_LDFLAGS="-L$NIX_BUILD_TOP/foo/lib -rpath $NIX_BUILD_TOP/foo/lib" $CC -lfoo -o ldflags-check ${./ldflags-main.c} - ./ldflags-check + ${emulator} ./ldflags-check printf "Check whether -nostdinc and -nostdinc++ is handled correctly" >&2 mkdir -p std-include cp ${./stdio.h} std-include/stdio.h NIX_DEBUG=1 $CC -I std-include -nostdinc -o nostdinc-main ${./nostdinc-main.c} - ./nostdinc-main + ${emulator} ./nostdinc-main $CXX -I std-include -nostdinc++ -o nostdinc-main++ ${./nostdinc-main.c} - ./nostdinc-main++ + ${emulator} ./nostdinc-main++ ${lib.optionalString sanitizersWorking '' printf "checking whether sanitizers are fully functional... ">&2 $CC -o sanitizers -fsanitize=address,undefined ${./sanitizers.c} - ./sanitizers + ASAN_OPTIONS=use_sigaltstack=0 ${emulator} ./sanitizers ''} touch $out diff --git a/pkgs/test/default.nix b/pkgs/test/default.nix index e72afbb399801..bf0842f266989 100644 --- a/pkgs/test/default.nix +++ b/pkgs/test/default.nix @@ -81,6 +81,8 @@ with pkgs; coq = callPackage ./coq {}; + makeHardcodeGsettingsPatch = callPackage ./make-hardcode-gsettings-patch { }; + makeWrapper = callPackage ./make-wrapper { }; makeBinaryWrapper = callPackage ./make-binary-wrapper { makeBinaryWrapper = pkgs.makeBinaryWrapper.override { diff --git a/pkgs/test/make-hardcode-gsettings-patch/default.nix b/pkgs/test/make-hardcode-gsettings-patch/default.nix new file mode 100644 index 0000000000000..6c5d2318c6d8c --- /dev/null +++ b/pkgs/test/make-hardcode-gsettings-patch/default.nix @@ -0,0 +1,58 @@ +{ runCommandLocal +, git +, clang-tools +, makeHardcodeGsettingsPatch +}: + +let + mkTest = + { + name, + expected, + src, + schemaIdToVariableMapping, + }: + + let + patch = makeHardcodeGsettingsPatch { + inherit src schemaIdToVariableMapping; + }; + in + runCommandLocal + "makeHardcodeGsettingsPatch-tests-${name}" + + { + nativeBuildInputs = [ + git + clang-tools + ]; + } + + '' + cp -r --no-preserve=all "${src}" src + cp -r --no-preserve=all "${expected}" src-expected + + pushd src + patch < "${patch}" + popd + + find src -name '*.c' -print0 | while read -d $'\0' sourceFile; do + sourceFile=''${sourceFile#src/} + clang-format -style='{BasedOnStyle: InheritParentConfig, ColumnLimit: 240}' -i "src/$sourceFile" "src-expected/$sourceFile" + git diff --no-index "src/$sourceFile" "src-expected/$sourceFile" | cat + done + touch "$out" + ''; +in +{ + basic = mkTest { + name = "basic"; + src = ./fixtures/example-project; + schemaIdToVariableMapping = { + "org.gnome.evolution-data-server.addressbook" = "EDS"; + "org.gnome.evolution.calendar" = "EVO"; + "org.gnome.seahorse.nautilus.window" = "SEANAUT"; + }; + expected = ./fixtures/example-project-patched; + }; +} diff --git a/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project-patched/main.c b/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project-patched/main.c new file mode 100644 index 0000000000000..7822a42b840a7 --- /dev/null +++ b/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project-patched/main.c @@ -0,0 +1,85 @@ +#include <gio/gio.h> +#include <glib-object.h> + +void schema_id_literal() { + GSettings *settings; + { + g_autoptr(GSettingsSchemaSource) schema_source; + g_autoptr(GSettingsSchema) schema; + schema_source = g_settings_schema_source_new_from_directory("@EDS@", g_settings_schema_source_get_default(), TRUE, NULL); + schema = g_settings_schema_source_lookup(schema_source, "org.gnome.evolution-data-server.addressbook", FALSE); + settings = g_settings_new_full(schema, NULL, NULL); + } + g_object_unref(settings); +} + +#define SELF_UID_PATH_ID "org.gnome.evolution-data-server.addressbook" +int schema_id_from_constant() { + GSettings *settings; + { + g_autoptr(GSettingsSchemaSource) schema_source; + g_autoptr(GSettingsSchema) schema; + schema_source = g_settings_schema_source_new_from_directory("@EDS@", g_settings_schema_source_get_default(), TRUE, NULL); + schema = g_settings_schema_source_lookup(schema_source, SELF_UID_PATH_ID, FALSE); + settings = g_settings_new_full(schema, NULL, NULL); + } + g_object_unref(settings); +} + +void schema_id_autoptr() { + g_autoptr(GSettings) settings = NULL; + { + g_autoptr(GSettingsSchemaSource) schema_source; + g_autoptr(GSettingsSchema) schema; + schema_source = g_settings_schema_source_new_from_directory("@EVO@", g_settings_schema_source_get_default(), TRUE, NULL); + schema = g_settings_schema_source_lookup(schema_source, "org.gnome.evolution.calendar", FALSE); + settings = g_settings_new_full(schema, NULL, NULL); + } +} + +void schema_id_with_backend() { + GSettings *settings; + { + g_autoptr(GSettingsSchemaSource) schema_source; + g_autoptr(GSettingsSchema) schema; + schema_source = g_settings_schema_source_new_from_directory("@EDS@", g_settings_schema_source_get_default(), TRUE, NULL); + schema = g_settings_schema_source_lookup(schema_source, "org.gnome.evolution-data-server.addressbook", FALSE); + settings = g_settings_new_full(schema, g_settings_backend_get_default(), NULL); + } + g_object_unref(settings); +} + +void schema_id_with_backend_and_path() { + GSettings *settings; + { + g_autoptr(GSettingsSchemaSource) schema_source; + g_autoptr(GSettingsSchema) schema; + schema_source = g_settings_schema_source_new_from_directory("@SEANAUT@", g_settings_schema_source_get_default(), TRUE, NULL); + schema = g_settings_schema_source_lookup(schema_source, "org.gnome.seahorse.nautilus.window", FALSE); + settings = g_settings_new_full(schema, g_settings_backend_get_default(), "/org/gnome/seahorse/nautilus/windows/123/"); + } + g_object_unref(settings); +} + +void schema_id_with_path() { + GSettings *settings; + { + g_autoptr(GSettingsSchemaSource) schema_source; + g_autoptr(GSettingsSchema) schema; + schema_source = g_settings_schema_source_new_from_directory("@SEANAUT@", g_settings_schema_source_get_default(), TRUE, NULL); + schema = g_settings_schema_source_lookup(schema_source, "org.gnome.seahorse.nautilus.window", FALSE); + settings = g_settings_new_full(schema, NULL, "/org/gnome/seahorse/nautilus/windows/123/"); + } + g_object_unref(settings); +} + +int main() { + schema_id_literal(); + schema_id_from_constant(); + schema_id_autoptr(); + schema_id_with_backend(); + schema_id_with_backend_and_path(); + schema_id_with_path(); + + return 0; +} diff --git a/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project/main.c b/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project/main.c new file mode 100644 index 0000000000000..afcb3686ec840 --- /dev/null +++ b/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project/main.c @@ -0,0 +1,49 @@ +#include <gio/gio.h> +#include <glib-object.h> + +void schema_id_literal() { + GSettings *settings; + settings = g_settings_new("org.gnome.evolution-data-server.addressbook"); + g_object_unref(settings); +} + +#define SELF_UID_PATH_ID "org.gnome.evolution-data-server.addressbook" +int schema_id_from_constant() { + GSettings *settings; + settings = g_settings_new(SELF_UID_PATH_ID); + g_object_unref(settings); +} + +void schema_id_autoptr() { + g_autoptr(GSettings) settings = NULL; + settings = g_settings_new("org.gnome.evolution.calendar"); +} + +void schema_id_with_backend() { + GSettings *settings; + settings = g_settings_new_with_backend("org.gnome.evolution-data-server.addressbook", g_settings_backend_get_default()); + g_object_unref(settings); +} + +void schema_id_with_backend_and_path() { + GSettings *settings; + settings = g_settings_new_with_backend_and_path("org.gnome.seahorse.nautilus.window", g_settings_backend_get_default(), "/org/gnome/seahorse/nautilus/windows/123/"); + g_object_unref(settings); +} + +void schema_id_with_path() { + GSettings *settings; + settings = g_settings_new_with_path("org.gnome.seahorse.nautilus.window", "/org/gnome/seahorse/nautilus/windows/123/"); + g_object_unref(settings); +} + +int main() { + schema_id_literal(); + schema_id_from_constant(); + schema_id_autoptr(); + schema_id_with_backend(); + schema_id_with_backend_and_path(); + schema_id_with_path(); + + return 0; +} diff --git a/pkgs/tools/X11/ckbcomp/default.nix b/pkgs/tools/X11/ckbcomp/default.nix index 6481971ed0f34..8f547a9501bc7 100644 --- a/pkgs/tools/X11/ckbcomp/default.nix +++ b/pkgs/tools/X11/ckbcomp/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "ckbcomp"; - version = "1.210"; + version = "1.212"; src = fetchFromGitLab { domain = "salsa.debian.org"; owner = "installer-team"; repo = "console-setup"; rev = version; - sha256 = "sha256-Np1u8oYIRwWlGpnpp5+VvYkZOkphv225p34og4O+HDE="; + sha256 = "sha256-ePWWBbMLXWZABztKeVV0nIfLfyO+9oBiSRNShbmOObw="; }; buildInputs = [ perl ]; diff --git a/pkgs/tools/admin/awscli2/default.nix b/pkgs/tools/admin/awscli2/default.nix index 0a0838d676d9e..0982e47c5517f 100644 --- a/pkgs/tools/admin/awscli2/default.nix +++ b/pkgs/tools/admin/awscli2/default.nix @@ -11,15 +11,6 @@ let py = python3.override { packageOverrides = self: super: { - awscrt = super.awscrt.overridePythonAttrs (oldAttrs: rec { - version = "0.14.0"; - src = self.fetchPypi { - inherit (oldAttrs) pname; - inherit version; - hash = "sha256-MGLTFcsWVC/gTdgjny6LwyOO6QRc1QcLkVzy677Lqqw="; - }; - }); - prompt-toolkit = super.prompt-toolkit.overridePythonAttrs (oldAttrs: rec { version = "3.0.28"; src = self.fetchPypi { @@ -34,14 +25,14 @@ let in with py.pkgs; buildPythonApplication rec { pname = "awscli2"; - version = "2.9.6"; # N.B: if you change this, check if overrides are still up-to-date + version = "2.9.8"; # N.B: if you change this, check if overrides are still up-to-date format = "pyproject"; src = fetchFromGitHub { owner = "aws"; repo = "aws-cli"; rev = version; - hash = "sha256-3zB0Uy2pmkrOLb+/mXZGs/pnzo6zi2zVPyeNPGPVQJM="; + hash = "sha256-Q1iHGwkFg0rkunwEgWQIqLEPAGfOLfqA1UpjmCe2x8M="; }; nativeBuildInputs = [ @@ -120,6 +111,8 @@ with py.pkgs; buildPythonApplication rec { python = py; # for aws_shell updateScript = nix-update-script { attrPath = pname; + # Excludes 1.x versions from the Github tags list + extraArgs = [ "--version-regex" "^(2\.(.*))" ]; }; tests.version = testers.testVersion { package = awscli2; diff --git a/pkgs/tools/admin/eksctl/default.nix b/pkgs/tools/admin/eksctl/default.nix index d3eb9eda84e37..991573417f3a8 100644 --- a/pkgs/tools/admin/eksctl/default.nix +++ b/pkgs/tools/admin/eksctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "eksctl"; - version = "0.123.0"; + version = "0.124.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = pname; rev = version; - sha256 = "sha256-K5o7lEFrUjAXXwL1cnWfuRNVXvLehk0tXCCIc0rfK5s="; + sha256 = "sha256-XFT05iJsrCLV4V2dqwr6QwVK+ARl2v3U4Omgjj6YZ8o="; }; - vendorSha256 = "sha256-CJ2b6O57E1mrNAWkDcnICeDzW3q4+uSeXV5UnYkbUng="; + vendorSha256 = "sha256-+tVD09XN67Ea7+Mz4E1bdAImUCwWDHelecBms9z/DUc="; doCheck = false; diff --git a/pkgs/tools/admin/exoscale-cli/default.nix b/pkgs/tools/admin/exoscale-cli/default.nix index 475fbe4cdde08..1c78b5a0278c9 100644 --- a/pkgs/tools/admin/exoscale-cli/default.nix +++ b/pkgs/tools/admin/exoscale-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "exoscale-cli"; - version = "1.61.0"; + version = "1.63.0"; src = fetchFromGitHub { owner = "exoscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-3ak/z6Ww+/VY1/TErQ+CBxq5xte3VeGbCz2P5QlHxLg="; + sha256 = "sha256-YRpaPUKExHewuDqIlXjS32Bu6eMHam153Cfbv+crs9M="; }; vendorSha256 = null; diff --git a/pkgs/tools/admin/fioctl/default.nix b/pkgs/tools/admin/fioctl/default.nix index 4360a3c012665..121796744b2a8 100644 --- a/pkgs/tools/admin/fioctl/default.nix +++ b/pkgs/tools/admin/fioctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fioctl"; - version = "0.29"; + version = "0.30.1"; src = fetchFromGitHub { owner = "foundriesio"; repo = "fioctl"; rev = "v${version}"; - sha256 = "sha256-6SUlkjFc8SakphN6iz+yoFVXqCisfBonlKuot7E2p3E="; + sha256 = "sha256-ocbTYeVhYTDyOJt3NndQhgz18xJWRudJRKel4WKS7vA="; }; - vendorSha256 = "sha256-ObS/100Tfq4rhOrwU+PPBzDwY3tKwH+Z0wm0bX0W8cE="; + vendorSha256 = "sha256-g8sTQXUk162SlA1iLEMGZ6O3FvF+8v/XINtZR8o0m8U="; ldflags = [ "-s" "-w" diff --git a/pkgs/tools/admin/fits-cloudctl/default.nix b/pkgs/tools/admin/fits-cloudctl/default.nix index 04fa90034e6a5..2c88943097c3c 100644 --- a/pkgs/tools/admin/fits-cloudctl/default.nix +++ b/pkgs/tools/admin/fits-cloudctl/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "fits-cloudctl"; - version = "0.11.3"; + version = "0.11.4"; src = fetchFromGitHub { owner = "fi-ts"; repo = "cloudctl"; rev = "v${version}"; - sha256 = "sha256-wmkFBzfbMP1kwONpmchI/VQ6ti43pLC3AZfUGPNFzeI="; + sha256 = "sha256-rn9F6vCwnz+pweBPYskiAZSfwT9nOyFIJBA3xbmPDhk="; }; - vendorSha256 = "sha256-Y+RElir4mC6s5I8+mRtYYxYW/m9ihkjSWpG8mSZEjjA="; + vendorSha256 = "sha256-aime2pVJw3Bwt4KU2lxpYk0DmRphiZg3M32NWoGeZ+E="; meta = with lib; { description = "Command-line client for FI-TS Finance Cloud Native services"; diff --git a/pkgs/tools/admin/rhoas/default.nix b/pkgs/tools/admin/rhoas/default.nix new file mode 100644 index 0000000000000..d88cedf81ad41 --- /dev/null +++ b/pkgs/tools/admin/rhoas/default.nix @@ -0,0 +1,46 @@ +{ lib, buildGoModule, fetchFromGitHub, installShellFiles, testers, rhoas }: + +buildGoModule rec { + pname = "rhoas"; + version = "0.51.7"; + + src = fetchFromGitHub { + owner = "redhat-developer"; + repo = "app-services-cli"; + rev = "v${version}"; + sha256 = "sha256-sgAr9v3nkMZ8linvR5AhYZV0NQuVqMnueGOo/KLqPc0="; + }; + + vendorSha256 = null; + + ldflags = [ + "-s" + "-w" + "-X github.com/redhat-developer/app-services-cli/internal/build.Version=${version}" + ]; + + nativeBuildInputs = [installShellFiles]; + + # Networking tests fail. + doCheck = false; + + postInstall = '' + installShellCompletion --cmd rhoas \ + --bash <($out/bin/rhoas completion bash) \ + --fish <($out/bin/rhoas completion fish) \ + --zsh <($out/bin/rhoas completion zsh) + ''; + + passthru.tests.version = testers.testVersion { + package = rhoas; + command = "HOME=$TMP rhoas version"; + }; + + meta = with lib; { + description = "Command Line Interface for Red Hat OpenShift Application Services"; + license = licenses.asl20; + homepage = "https://github.com/redhat-developer/app-services-cli"; + changelog = "https://github.com/redhat-developer/app-services-cli/releases/v${version}"; + maintainers = with maintainers; [stehessel]; + }; +} diff --git a/pkgs/tools/audio/abcm2ps/default.nix b/pkgs/tools/audio/abcm2ps/default.nix index 0a62020b3ba07..249b4ba1706cc 100644 --- a/pkgs/tools/audio/abcm2ps/default.nix +++ b/pkgs/tools/audio/abcm2ps/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "abcm2ps"; - version = "8.14.13"; + version = "8.14.14"; src = fetchFromGitHub { owner = "leesavide"; repo = "abcm2ps"; rev = "v${version}"; - hash = "sha256-31cEBtVn7GlNIsPkRiW0DyKA/giLeJ86EUZr8zjYy3s="; + hash = "sha256-2BSbnziwlilYio9CF4MTlj0GVlkSpL8jeaqvLIBCeLQ="; }; configureFlags = [ diff --git a/pkgs/tools/audio/soco-cli/default.nix b/pkgs/tools/audio/soco-cli/default.nix index 52614a8dc2201..72e5323f60f3b 100644 --- a/pkgs/tools/audio/soco-cli/default.nix +++ b/pkgs/tools/audio/soco-cli/default.nix @@ -37,5 +37,6 @@ python3.pkgs.buildPythonApplication rec { homepage = "https://github.com/avantrec/soco-cli"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; + mainProgram = "sonos"; }; } diff --git a/pkgs/tools/audio/spotdl/default.nix b/pkgs/tools/audio/spotdl/default.nix index 32dc47f531884..02628bf74ec12 100644 --- a/pkgs/tools/audio/spotdl/default.nix +++ b/pkgs/tools/audio/spotdl/default.nix @@ -6,27 +6,39 @@ python3.pkgs.buildPythonApplication rec { pname = "spotdl"; - version = "3.9.6"; + version = "4.0.6"; + + format = "pyproject"; src = fetchFromGitHub { owner = "spotDL"; repo = "spotify-downloader"; rev = "refs/tags/v${version}"; - hash = "sha256-JoeNVMuEslz7A7G4ZvikimZrG75YrH5Mx3Oamtfy4cM="; + hash = "sha256-oZyEh76nNKMeEenz0dNLQ5Hd9jRaot6He8toxDSZZ/8="; }; + nativeBuildInputs = with python3.pkgs; [ + poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = true; + propagatedBuildInputs = with python3.pkgs; [ spotipy - pytube - rich - rapidfuzz - mutagen ytmusicapi + pytube yt-dlp + mutagen + rich beautifulsoup4 requests - unidecode - setuptools + rapidfuzz + python-slugify + uvicorn + pydantic + fastapi + platformdirs ]; checkInputs = with python3.pkgs; [ @@ -37,8 +49,36 @@ python3.pkgs.buildPythonApplication rec { pytest-subprocess ]; - # requires networking - doCheck = false; + preCheck = '' + export HOME=$TMPDIR + ''; + + disabledTestPaths = [ + # require networking + "tests/test_init.py" + "tests/test_matching.py" + "tests/utils/test_m3u.py" + "tests/utils/test_metadata.py" + "tests/utils/test_search.py" + ]; + + disabledTests = [ + # require networking + "test_album_from_string" + "test_album_from_url" + "test_album_length" + "test_artist_from_url" + "test_artist_from_string" + "test_convert" + "test_download_ffmpeg" + "test_download_song" + "test_playlist_from_string" + "test_playlist_from_url" + "test_playlist_length" + "test_preload_song" + "test_song_from_search_term" + "test_song_from_url" + ]; makeWrapperArgs = [ "--prefix" "PATH" ":" (lib.makeBinPath [ ffmpeg ]) diff --git a/pkgs/tools/audio/vgmtools/default.nix b/pkgs/tools/audio/vgmtools/default.nix index 862b8a80bc937..a65ba1b4cda40 100644 --- a/pkgs/tools/audio/vgmtools/default.nix +++ b/pkgs/tools/audio/vgmtools/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "vgmtools"; - version = "unstable-2022-10-31"; + version = "unstable-2022-12-03"; src = fetchFromGitHub { owner = "vgmrips"; repo = "vgmtools"; - rev = "9d7a9f4b1c40d26949fa730987f6c3eb9cf3e3ec"; - sha256 = "Joxlu+k8xaF90u+ydHhu6NpqGQAKL8r5u4qAsfVfOz8="; + rev = "b9216623ffb9219c46a7a10669175c7a4c8cd946"; + sha256 = "fPt/z4D4C8TWoz7FivxmXGDcYGc7sXWvxE0+CoyFgDQ="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/backup/duplicacy/default.nix b/pkgs/tools/backup/duplicacy/default.nix index ea6a1ffa88ee8..1b7cdf3d0d30f 100644 --- a/pkgs/tools/backup/duplicacy/default.nix +++ b/pkgs/tools/backup/duplicacy/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "duplicacy"; - version = "3.0.1"; + version = "3.1.0"; src = fetchFromGitHub { owner = "gilbertchen"; repo = "duplicacy"; rev = "v${version}"; - sha256 = "sha256-7VCgXUmmAlmv0UwSM3Hs9t586gJWvFWsP/0BJXze1r4="; + sha256 = "sha256-PYUfECxtUG2WuLmYLtE3Ugcr8GeQMQwQa4uFzcl1RoY="; }; - vendorSha256 = "sha256-3vzx2SCgJAhSwW8DRtkQ6pywquFwwou0HZ6a1dmHhPY="; + vendorSha256 = "sha256-90NWpMEUlPo5+G7DnqFrZyTlAYDAFfZrsctNTaWVjX4="; doCheck = false; diff --git a/pkgs/tools/backup/percona-xtrabackup/2_4.nix b/pkgs/tools/backup/percona-xtrabackup/2_4.nix deleted file mode 100644 index 0d2f951c5f89c..0000000000000 --- a/pkgs/tools/backup/percona-xtrabackup/2_4.nix +++ /dev/null @@ -1,6 +0,0 @@ -{ callPackage, ... } @ args: - -callPackage ./generic.nix (args // { - version = "2.4.26"; - sha256 = "sha256-/erBv/Asi/MfoSvAcQ647VAgOfiViPunFWmvy/W9J18="; -}) diff --git a/pkgs/tools/cd-dvd/bootiso/default.nix b/pkgs/tools/cd-dvd/bootiso/default.nix index ecd8ecbc9ae84..ee5d4fd8456f3 100644 --- a/pkgs/tools/cd-dvd/bootiso/default.nix +++ b/pkgs/tools/cd-dvd/bootiso/default.nix @@ -1,6 +1,7 @@ { lib , stdenvNoCC , fetchFromGitHub +, fetchpatch , bash , makeWrapper , bc @@ -25,16 +26,28 @@ stdenvNoCC.mkDerivation rec { sha256 = "1l09d543b73r0wbpsj5m6kski8nq48lbraq1myxhidkgl3mm3d5i"; }; + patches = [ + (fetchpatch { + url = "https://code.opensuse.org/package/bootiso/raw/3799710e3da40c1b429ea1a2ce3896d18d08a5c5/f/syslinux-lib-root.patch"; + sha256 = "sha256-x2EJppQsPPymSrjRwEy7mylW+2OKcGzKsKF3y7fzrB8="; + }) + ]; + strictDeps = true; buildInputs = [ bash ]; nativeBuildInputs = [ makeWrapper ]; makeFlags = [ "prefix=${placeholder "out"}" ]; + postPatch = '' + substituteInPlace bootiso \ + --replace "\$(basename \"\$0\")" "bootiso" \ + --replace "/usr/share/syslinux" "${syslinux}/share/syslinux" + ''; + postInstall = '' wrapProgram $out/bin/bootiso \ --prefix PATH : ${lib.makeBinPath [ bc jq coreutils util-linux wimlib file syslinux gnugrep busybox ]} \ - --prefix BOOTISO_SYSLINUX_LIB_ROOT : ${syslinux}/share/syslinux ''; meta = with lib; { diff --git a/pkgs/tools/cd-dvd/ventoy-bin/default.nix b/pkgs/tools/cd-dvd/ventoy-bin/default.nix index a9f853cc7fe6a..5ade321103038 100644 --- a/pkgs/tools/cd-dvd/ventoy-bin/default.nix +++ b/pkgs/tools/cd-dvd/ventoy-bin/default.nix @@ -51,13 +51,13 @@ let in stdenv.mkDerivation (finalAttrs: { pname = "ventoy-bin"; - version = "1.0.84"; + version = "1.0.85"; src = let inherit (finalAttrs) version; in fetchurl { url = "https://github.com/ventoy/Ventoy/releases/download/v${version}/ventoy-${version}-linux.tar.gz"; - hash = "sha256-ygIAw270Px5nRrSrsD3yLBRFBKGwzdxXzQ6udS9g2ZI="; + hash = "sha256-EjS/Gf+DdgGEv38O+dnssAC8SxWBRXklbpUdcIahRCA="; }; patches = [ diff --git a/pkgs/tools/filesystems/squashfs-tools-ng/default.nix b/pkgs/tools/filesystems/squashfs-tools-ng/default.nix index b2c0ae45f4686..7f9bd4e61de79 100644 --- a/pkgs/tools/filesystems/squashfs-tools-ng/default.nix +++ b/pkgs/tools/filesystems/squashfs-tools-ng/default.nix @@ -21,17 +21,5 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ qyliss ]; platforms = platforms.unix; - - # TODO: Remove once nixpkgs uses newer SDKs that supports '*at' functions. - # Probably macOS SDK 10.13 or later. Check the current version in - # ../../../../os-specific/darwin/apple-sdk/default.nix - # - # From the build logs: - # - # > Undefined symbols for architecture x86_64: - # > "_utimensat", referenced from: - # > _set_attribs in rdsquashfs-restore_fstree.o - # > ld: symbol(s) not found for architecture x86_64 - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/pkgs/tools/filesystems/stratisd/default.nix b/pkgs/tools/filesystems/stratisd/default.nix index b4405f81fb6b2..c1456d9477534 100644 --- a/pkgs/tools/filesystems/stratisd/default.nix +++ b/pkgs/tools/filesystems/stratisd/default.nix @@ -24,18 +24,18 @@ stdenv.mkDerivation rec { pname = "stratisd"; - version = "3.4.2"; + version = "3.4.4"; src = fetchFromGitHub { owner = "stratis-storage"; repo = pname; rev = "v${version}"; - hash = "sha256-Ui0L03KLePqLvxWaJm+qGQ8q+S8Sz0jwtLhIORNWeAk="; + hash = "sha256-6VrbouYNB2iOndnDBfww8gT4eFgfP+HWcfep+N1nErI="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; - hash = "sha256-o4MKnJycyzlFfE1YyByyjn/XENheLw4tdVXtgzVxDJM="; + hash = "sha256-C3nkHQt+w0OYbExDfEpFE0Et6ILJqMNRPXCEWiURf3A="; }; postPatch = '' diff --git a/pkgs/tools/games/opentracker/deps.nix b/pkgs/tools/games/opentracker/deps.nix index 25a5789c0a1f0..fd7e7b3c27c73 100644 --- a/pkgs/tools/games/opentracker/deps.nix +++ b/pkgs/tools/games/opentracker/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Autofac"; version = "6.0.0"; sha256 = "1faz8j3caqh4f2w4bcicz5x67f63f6463jikg89sr9qmqbv778hn"; }) (fetchNuGet { pname = "Autofac"; version = "6.1.0"; sha256 = "0g1iic7y19rm536dzsllabw7phbgb6wzghhpfmdxz7yp7zrfjk15"; }) @@ -25,11 +28,6 @@ (fetchNuGet { pname = "HarfBuzzSharp"; version = "2.6.1.7"; sha256 = "0xm4dr6cs5n1ywbbpp1jrxfk8rn1iy61kdm29kb6bqj1q0gv8zyv"; }) (fetchNuGet { pname = "HarfBuzzSharp.NativeAssets.Linux"; version = "2.6.1.7"; sha256 = "1slackrhcwsjn3f6sa0nlrcynzmx5pbqv8j33l9w6z9w7ssq4wkn"; }) (fetchNuGet { pname = "JetBrains.Annotations"; version = "2020.3.0"; sha256 = "04xlfqnfg3069f014q8f0vx7y70m8nldbf9fia4b50bp3rry2lv2"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "3.1.10"; sha256 = "0xn4zh7shvijqlr03fqsmps6gz856isd9bg9rk4z2c4599ggal77"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "3.1.26"; sha256 = "0rib2121wri6wj6h4f6w4yqw9qp2xsad3ind63fmp1sr649jifyh"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "3.1.26"; sha256 = "0z29rrhc87g0bi273lcqd608f7ngd16nv85v8549231yvf99n60x"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "3.1.26"; sha256 = "0pbm6hpibsvq5w8hyvvllz4qns287x3l8bc07krffv23yfbv8zwy"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x86"; version = "3.1.26"; sha256 = "1kiahv55qyqy7g772m0v731yb5jfpqxqb0wlyp5wa0jppkhdnqxc"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Analyzers"; version = "3.3.2"; sha256 = "162vb5894zxps0cf5n9gc08an7gwybzz87allx3lsszvllr9ldx4"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Common"; version = "3.9.0"; sha256 = "1x6l6kn8iv5gk1545nxs2gwzkb8gj4sb9kryai132l7yg9afjqik"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.CSharp"; version = "3.9.0"; sha256 = "0crb9x5rhija8y7b0iya9axcvinz2hv3bgf80bvz7kv6zpbpszkz"; }) @@ -40,15 +38,6 @@ (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.7.0"; sha256 = "0gd67zlw554j098kabg887b5a6pq9kzavpa3jjy5w53ccjzjfy8j"; }) (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "16.9.1"; sha256 = "1761mvkp5mwhw150fvazdhh4ybvxpvx05g9znf8n1fqx832wxrw5"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "3.1.26"; sha256 = "1xyha28nvy9zqanb4ciscm60jls2fcc4c93k1ma6z3hgk6g9nfqr"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "3.1.26"; sha256 = "1vk4dr2z72nmjg2skqvy2m2h5brqp21v51pnd7ldpm7asgr5ck8n"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "3.1.26"; sha256 = "0l5yfnpbd36n38rjlmhsnq4bniq1fcssv4qh8kb9h3qigz40qxj9"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x86"; version = "3.1.26"; sha256 = "0z8g5jp18r0k4klw4jch17ps4f78vxaxkcmnmj8wrr7qdp81jy44"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "3.1.0"; sha256 = "08svsiilx9spvjamcnjswv0dlpdrgryhr3asdz7cvnl914gjzq4y"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "3.1.26"; sha256 = "1h9b8fwgwbycvn1ngxnpdz3s1zh59wi2iy8n4y2nfkmz2rbldrrm"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "3.1.26"; sha256 = "0y06qz4pgflwia222mljg19nlfmhcg0qs1a8wm3zwj602wzy3nll"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "3.1.26"; sha256 = "1half7rywhxb1x19gzddvjqbll4whx9wmwdlk57iy68djas95lmy"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x86"; version = "3.1.26"; sha256 = "09grar210h1r6af15ng418vx6ln3pi4x22vn5n2889xldf4x2n56"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "5.0.0"; sha256 = "0mwpwdflidzgzfx2dlpkvvnkgkr2ayaf0s80737h4wa35gaj11rc"; }) diff --git a/pkgs/tools/games/ps3-disc-dumper/default.nix b/pkgs/tools/games/ps3-disc-dumper/default.nix index 523ae25a94999..577be9738486e 100644 --- a/pkgs/tools/games/ps3-disc-dumper/default.nix +++ b/pkgs/tools/games/ps3-disc-dumper/default.nix @@ -27,10 +27,6 @@ buildDotnetModule rec { openssl ]; - dotnetFlags = [ - "--runtime linux-x64" - ]; - meta = with lib; { homepage = "https://github.com/13xforever/ps3-disc-dumper"; description = "A handy utility to make decrypted PS3 disc dumps"; diff --git a/pkgs/tools/games/ps3-disc-dumper/deps.nix b/pkgs/tools/games/ps3-disc-dumper/deps.nix index ee3e785edfd0d..d62b17a828b04 100644 --- a/pkgs/tools/games/ps3-disc-dumper/deps.nix +++ b/pkgs/tools/games/ps3-disc-dumper/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Crc32.NET"; version = "1.2.0"; sha256 = "0qaj3192k1vfji87zf50rhydn5mrzyzybrs2k4v7ap29k8i0vi5h"; }) (fetchNuGet { pname = "DiscUtils.Core"; version = "0.16.13"; sha256 = "1q5pbs7x6bbvsqcz363fj7c0gxdg3ay1r9a83f7yh137rmaprj8h"; }) @@ -9,14 +12,12 @@ (fetchNuGet { pname = "EndianBitConverter"; version = "1.1.0"; sha256 = "02wz9agw56a8s0gxsgflqga2r0mbn6xzqyj5hvzn043jr4xwggpk"; }) (fetchNuGet { pname = "Libuv"; version = "1.9.1"; sha256 = "0j9gdbd3gjycyx822q0c0hl9wjc7dlhz86i4rm3ds88ykngma1vd"; }) (fetchNuGet { pname = "Microsoft.AspNet.WebApi.Client"; version = "5.2.7"; sha256 = "1j0wbdmycj5xbk06p32f7xrddc40sbj3yca4d7ywg611yk26mvi1"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.6"; sha256 = "0ndah9cqkgswhi60wrnni10j1d2hdg8jljij83lk1wbfqbng86jm"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Analyzers"; version = "1.1.0"; sha256 = "08r667hj2259wbim1p3al5qxkshydykmb7nd9ygbjlg4mmydkapc"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Common"; version = "1.3.0"; sha256 = "097qi36jhyllpqj313nxzwc64a4f65p014gaj6fz4z5jcphkkk15"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.CSharp"; version = "1.3.0"; sha256 = "0vpslncd5lk88ijb42qbp88dfrd0fg4kri44w6jpmxb3fcqazais"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.VisualBasic"; version = "1.3.0"; sha256 = "186chky80rryhzh5dh8j318ghyvn1a7r2876rlyadxdrs7aqv0ll"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) (fetchNuGet { pname = "Microsoft.NETCore.App"; version = "1.0.4"; sha256 = "0yc3nrvwfh3b9ajf0sqlhdil5imf2p16bqjnaasf7wdx6lwl98in"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.6"; sha256 = "0fjbjh7yxqc9h47ix37y963xi9f9y99jvl26cw3x3kvjlb8x0bgj"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHost"; version = "1.0.1"; sha256 = "1qr4gnzlpwzv8jr7ijmdg13x2s9m35g4ma0bh18kci4ml7h9jb6a"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHostPolicy"; version = "1.0.3"; sha256 = "0r5gi9j9ynvjd9kz0ajrsgw8m8lynxjq2czinxfmj5ajrvczx0vn"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHostResolver"; version = "1.0.1"; sha256 = "109zs3bqhzh6mhbf2rfpwxmpb8fq57jr7wriyylynirsqh1lnql4"; }) diff --git a/pkgs/tools/games/scarab/deps.nix b/pkgs/tools/games/scarab/deps.nix index bfef60b66d321..cc0fcc8ed5373 100644 --- a/pkgs/tools/games/scarab/deps.nix +++ b/pkgs/tools/games/scarab/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Avalonia"; version = "0.10.12"; sha256 = "1hb6v8sm7gd8aswdv0slnk8cvvxs5ac82knc3pzvxj0js2n4lnv2"; }) (fetchNuGet { pname = "Avalonia.Angle.Windows.Natives"; version = "2.1.0.2020091801"; sha256 = "04jm83cz7vkhhr6n2c9hya2k8i2462xbf6np4bidk55as0jdq43a"; }) @@ -20,7 +23,6 @@ (fetchNuGet { pname = "HarfBuzzSharp.NativeAssets.Win32"; version = "2.8.2-preview.178"; sha256 = "1r5syii96wv8q558cvsqw3lr10cdw6677lyiy82p6i3if51v3mr7"; }) (fetchNuGet { pname = "JetBrains.Annotations"; version = "10.3.0"; sha256 = "1grdx28ga9fp4hwwpwv354rizm8anfq4lp045q4ss41gvhggr3z8"; }) (fetchNuGet { pname = "MessageBox.Avalonia"; version = "1.8.1-night"; sha256 = "1gcbqj0a10m8cxg6p1jmj19c8y34pbh9h3h08c50z348f3cyvrlx"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.6"; sha256 = "0ndah9cqkgswhi60wrnni10j1d2hdg8jljij83lk1wbfqbng86jm"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Analyzers"; version = "2.9.6"; sha256 = "18mr1f0wpq0fir8vjnq0a8pz50zpnblr7sabff0yqx37c975934a"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Common"; version = "3.4.0"; sha256 = "12rn6gl4viycwk3pz5hp5df63g66zvba4hnkwr3f0876jj5ivmsw"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.CSharp"; version = "3.4.0"; sha256 = "0rhylcwa95bxawcgixk64knv7p7xrykdjcabmx3gknk8hvj1ai9y"; }) @@ -32,7 +34,6 @@ (fetchNuGet { pname = "Microsoft.Extensions.DependencyInjection"; version = "6.0.0-preview.5.21301.5"; sha256 = "1ibsp938w6788jpjzk5813sma3ljda4hwy8xx3nabjwqps187pk3"; }) (fetchNuGet { pname = "Microsoft.Extensions.DependencyInjection.Abstractions"; version = "6.0.0-preview.5.21301.5"; sha256 = "146baaxblq1zfs3za7avpsay1v7d8m3ds067hza98y0yawvj5sd2"; }) (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "16.7.1"; sha256 = "0yqxipj74ax2n76w9ccydppx78ym8m5fda88qnvj4670qjvl0kf8"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.6"; sha256 = "0fjbjh7yxqc9h47ix37y963xi9f9y99jvl26cw3x3kvjlb8x0bgj"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "2.0.0"; sha256 = "1fk2fk2639i7nzy58m9dvpdnzql4vb8yl8vr19r2fp8lmj9w2jr0"; }) diff --git a/pkgs/tools/graphics/gfxreconstruct/default.nix b/pkgs/tools/graphics/gfxreconstruct/default.nix new file mode 100644 index 0000000000000..31ced64c46a1e --- /dev/null +++ b/pkgs/tools/graphics/gfxreconstruct/default.nix @@ -0,0 +1,67 @@ +{ stdenv +, fetchFromGitHub +, lib +, cmake +, makeWrapper +, pkg-config +, python3 +, wayland +, libX11 +, libxcb +, lz4 +, vulkan-loader +, xcbutilkeysyms +, zlib +, zstd +}: + +stdenv.mkDerivation rec { + pname = "gfxreconstruct"; + version = "0.9.15"; + + src = fetchFromGitHub { + owner = "LunarG"; + repo = "gfxreconstruct"; + rev = "v${version}"; + hash = "sha256-hIzQ5L0Payj8hlyy5UI7RXgnyhQBPqG7nfbvW2VYvTg="; + fetchSubmodules = true; + }; + + buildInputs = [ + libX11 + libxcb + lz4 + python3 + wayland + xcbutilkeysyms + zlib + zstd + ]; + + nativeBuildInputs = [ + cmake + makeWrapper + pkg-config + ]; + + # The python script searches in subfolders, but we want to search in the same bin directory + prePatch = '' + substituteInPlace tools/gfxrecon/gfxrecon.py \ + --replace "scriptdir, '..', cmd" 'scriptdir' + ''; + + # Fix the path to the layer library + postInstall = '' + substituteInPlace $out/share/vulkan/explicit_layer.d/VkLayer_gfxreconstruct.json \ + --replace 'libVkLayer_gfxreconstruct.so' "$out/lib/libVkLayer_gfxreconstruct.so" + wrapProgram $out/bin/gfxrecon-replay \ + --prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ vulkan-loader ]} + ''; + + meta = with lib; { + description = "Graphics API Capture and Replay Tools"; + homepage = "https://github.com/LunarG/gfxreconstruct/"; + license = licenses.mit; + maintainers = with maintainers; [ Flakebi ]; + }; +} diff --git a/pkgs/tools/graphics/ldgallery/compiler/default.nix b/pkgs/tools/graphics/ldgallery/compiler/default.nix index 37926550e08b2..adbe371dbb82f 100644 --- a/pkgs/tools/graphics/ldgallery/compiler/default.nix +++ b/pkgs/tools/graphics/ldgallery/compiler/default.nix @@ -35,4 +35,8 @@ mkDerivation { license = lib.licenses.agpl3Only; mainProgram = "ldgallery"; maintainers = [ lib.maintainers.pacien ]; + + # Does not compile with ghc-9.2 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/pkgs/tools/graphics/oxipng/default.nix b/pkgs/tools/graphics/oxipng/default.nix index 57c7a35e0b94f..a48f18af51e95 100644 --- a/pkgs/tools/graphics/oxipng/default.nix +++ b/pkgs/tools/graphics/oxipng/default.nix @@ -1,15 +1,15 @@ { lib, stdenv, fetchCrate, rustPlatform }: rustPlatform.buildRustPackage rec { - version = "7.0.0"; + version = "8.0.0"; pname = "oxipng"; src = fetchCrate { inherit version pname; - hash = "sha256-egAt2XypPFxsOuo8RsIXTmFdmBUe+eZh3p3vlnnx8wo="; + hash = "sha256-stTwsU9XK3lF4q2sDgb9A1KG1NnhCfVxYWRiBvlmiqQ="; }; - cargoHash = "sha256-GbJU31UBdRai2JLEdx9sPh6rJWnU4RlDL8DooI9MCUg="; + cargoHash = "sha256-XMIsdv2AHMGs0tDEWe3cfplZU9CbqEkHd7L5eS+V7j0="; doCheck = !stdenv.isAarch64 && !stdenv.isDarwin; diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix index 1ce947361df97..d8181142c09ff 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix @@ -13,17 +13,15 @@ in stdenv.mkDerivation rec { pname = "ibus-typing-booster"; - version = "2.7.5"; + version = "2.19.10"; src = fetchFromGitHub { owner = "mike-fabian"; repo = "ibus-typing-booster"; rev = version; - sha256 = "072mi8r10v78sfs81zxdwfabf87fp872c99c5iral1ywwa4iynpl"; + sha256 = "Ie3cQ1YC+LB5I5LtKyJ0RO+dyjFbVsemW110t3gPmCM="; }; - patches = [ ./hunspell-dirs.patch ]; - nativeBuildInputs = [ autoreconfHook pkg-config wrapGAppsHook gobject-introspection ]; buildInputs = [ python ibus gtk3 m17n_lib ]; @@ -34,8 +32,8 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://mike-fabian.github.io/ibus-typing-booster/"; license = licenses.gpl3Plus; - description = "A typing booster engine for the IBus platform"; - maintainers = with maintainers; [ ]; + description = "A completion input method for faster typing"; + maintainers = with maintainers; [ ncfavier ]; isIbusEngine = true; }; } diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/hunspell-dirs.patch b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/hunspell-dirs.patch deleted file mode 100644 index 7b624b379a264..0000000000000 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/hunspell-dirs.patch +++ /dev/null @@ -1,31 +0,0 @@ -diff --git a/engine/itb_util.py b/engine/itb_util.py -index ded236a..633525a 100755 ---- a/engine/itb_util.py -+++ b/engine/itb_util.py -@@ -1876,14 +1876,18 @@ def find_hunspell_dictionary(language): - If no dictionary can be found for the requested language, - the return value is ('', ''). - ''' -- dirnames = [ -- '/usr/share/hunspell', -- '/usr/share/myspell', -- '/usr/share/myspell/dicts', -- '/usr/local/share/hunspell', # On FreeBSD the dictionaries are here -- '/usr/local/share/myspell', -- '/usr/local/share/myspell/dicts', -- ] -+ -+ if "NIX_HUNSPELL_DIRS" in os.environ: -+ dirnames = os.environ["NIX_HUNSPELL_DIRS"].split(":") -+ else: # fallback to the original behavior -+ dirnames = [ -+ '/usr/share/hunspell', -+ '/usr/share/myspell', -+ '/usr/share/myspell/dicts', -+ '/usr/local/share/hunspell', # On FreeBSD the dictionaries are here -+ '/usr/local/share/myspell', -+ '/usr/local/share/myspell/dicts', -+ ] - dic_path = '' - aff_path = '' - for language in expand_languages([language]): diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/wrapper.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/wrapper.nix index e4394028658d5..4b5180f0e15c1 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/wrapper.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/wrapper.nix @@ -1,14 +1,10 @@ { typing-booster, symlinkJoin, hunspellDicts, lib, makeWrapper -, langs ? [ "de-de" "en-us" "es-es" "fr-moderne" "it-it" "sv-se" "sv-fi" ] +, langs ? [ "de-de" "en-gb-ise" "en-us" "es-es" "fr-moderne" "it-it" "sv-se" "sv-fi" ] }: let - hunspellDirs = with lib; makeSearchPath ":" (flatten (forEach langs (lang: [ - "${hunspellDicts.${lang}}/share/hunspell" - "${hunspellDicts.${lang}}/share/myspell" - "${hunspellDicts.${lang}}/share/myspell/dicts" - ]))); + hunspellDirs = lib.makeSearchPath "share/hunspell" (lib.attrVals langs hunspellDicts); in @@ -20,7 +16,7 @@ symlinkJoin { postBuild = '' for i in bin/emoji-picker libexec/ibus-{setup,engine}-typing-booster; do wrapProgram "$out/$i" \ - --prefix NIX_HUNSPELL_DIRS : ${lib.escapeShellArg hunspellDirs} + --prefix DICPATH : ${lib.escapeShellArg hunspellDirs} done sed -i -e "s,${typing-booster},$out," $out/share/ibus/component/typing-booster.xml diff --git a/pkgs/tools/misc/arch-install-scripts/default.nix b/pkgs/tools/misc/arch-install-scripts/default.nix index caaf298c2f94e..50510512dc9c7 100644 --- a/pkgs/tools/misc/arch-install-scripts/default.nix +++ b/pkgs/tools/misc/arch-install-scripts/default.nix @@ -68,8 +68,9 @@ resholve.mkDerivation rec { # TODO: no good way to resolve mount/umount in Nix builds for now # see https://github.com/abathur/resholve/issues/29 - fake = { - external = [ "mount" "umount" ]; + fix = { + mount = true; + umount = true; }; keep = [ "$setup" "$pid_unshare" "$mount_unshare" "${pacman}/bin/pacman" ]; diff --git a/pkgs/tools/misc/asdf-vm/default.nix b/pkgs/tools/misc/asdf-vm/default.nix index fd868c95502a9..5c6b94191c778 100644 --- a/pkgs/tools/misc/asdf-vm/default.nix +++ b/pkgs/tools/misc/asdf-vm/default.nix @@ -37,13 +37,13 @@ ${asdfReshimFile} ''; in stdenv.mkDerivation rec { pname = "asdf-vm"; - version = "0.10.2"; + version = "0.11.0"; src = fetchFromGitHub { owner = "asdf-vm"; repo = "asdf"; rev = "v${version}"; - sha256 = "sha256-x1B5eKo6PS/4+kCAZqCoOxFymcCobpf4caPSNI6WFOk="; + sha256 = "sha256-0dO+IYLhiWe83iaP2CHj7D4o7UVqQemZBPW+6vu+RQY="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/misc/broot/default.nix b/pkgs/tools/misc/broot/default.nix index add13870148c4..5bd2f231392fa 100644 --- a/pkgs/tools/misc/broot/default.nix +++ b/pkgs/tools/misc/broot/default.nix @@ -15,14 +15,14 @@ rustPlatform.buildRustPackage rec { pname = "broot"; - version = "1.16.2"; + version = "1.18.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-5R5pGCn4CJU2kGPiu6PpUBxr0/02hOwN1ikns2pvGA0="; + sha256 = "sha256-GR0a5NDJBcRLoNOeG6S+fP3Fr7r5fVB9oEcjANRYJt4="; }; - cargoHash = "sha256-0d7EMWc/PU9kDgfTVc1SWYYym9UEULwR1X3qIW+zvjM="; + cargoHash = "sha256-Hk9bc1mo8GxcPICKXc9zDq18S5TZElDncxJ+w2fC2do="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/tools/misc/cloc/default.nix b/pkgs/tools/misc/cloc/default.nix index 6ac8a5ceec40a..e89e785e9bdcb 100644 --- a/pkgs/tools/misc/cloc/default.nix +++ b/pkgs/tools/misc/cloc/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "cloc"; - version = "1.94"; + version = "1.96"; src = fetchFromGitHub { owner = "AlDanial"; repo = "cloc"; rev = "v${version}"; - sha256 = "sha256-m0pTShkwaX77IY1y9pWQnp6AVklYxg3L2JMiE/KfUyA="; + sha256 = "sha256-20vL+SX8Tbp6QxErDn76c6sLWnB1IJwHlQX4YAvj+Eg="; }; setSourceRoot = '' diff --git a/pkgs/tools/misc/coreboot-configurator/default.nix b/pkgs/tools/misc/coreboot-configurator/default.nix index bed689651a4bd..923b7d55cae3c 100644 --- a/pkgs/tools/misc/coreboot-configurator/default.nix +++ b/pkgs/tools/misc/coreboot-configurator/default.nix @@ -33,6 +33,11 @@ stdenv.mkDerivation { --replace '/usr/sbin/nvramtool' '${nvramtool}/bin/nvramtool' ''; + postFixup = '' + substituteInPlace $out/share/applications/coreboot-configurator.desktop \ + --replace '/usr/bin/coreboot-configurator' 'coreboot-configurator' + ''; + meta = with lib; { description = "A simple GUI to change settings in Coreboot's CBFS"; homepage = "https://support.starlabs.systems/kb/guides/coreboot-configurator"; diff --git a/pkgs/tools/misc/cyberchef/default.nix b/pkgs/tools/misc/cyberchef/default.nix index 0bdeb64c0c161..c229667db474a 100644 --- a/pkgs/tools/misc/cyberchef/default.nix +++ b/pkgs/tools/misc/cyberchef/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "cyberchef"; - version = "9.49.0"; + version = "9.55.0"; src = fetchzip { url = "https://github.com/gchq/CyberChef/releases/download/v${version}/CyberChef_v${version}.zip"; - sha256 = "sha256-5cqCPxyH4O4TzAIwRR2oyWMzIl5Hi5YcdOKdpl518zw="; + sha256 = "sha256-nJes11d/KqQH6pCGIEwlEeP0BjsUr9bo5rBoEoB0IZk="; stripRoot = false; }; @@ -21,5 +21,6 @@ stdenv.mkDerivation rec { homepage = "https://gchq.github.io/CyberChef"; maintainers = with maintainers; [ sebastianblunt ]; license = licenses.asl20; + platforms = platforms.all; }; } diff --git a/pkgs/tools/misc/debian-devscripts/default.nix b/pkgs/tools/misc/debian-devscripts/default.nix index 858c114f68c80..343713c02255a 100644 --- a/pkgs/tools/misc/debian-devscripts/default.nix +++ b/pkgs/tools/misc/debian-devscripts/default.nix @@ -1,23 +1,32 @@ {lib, stdenv, fetchurl, xz, dpkg -, libxslt, docbook_xsl, makeWrapper +, libxslt, docbook_xsl, makeWrapper, writeShellScript , python3Packages -, perlPackages, curl, gnupg, diffutils +, perlPackages, curl, gnupg, diffutils, nano, pkg-config, bash-completion, help2man , sendmailPath ? "/run/wrappers/bin/sendmail" }: let inherit (python3Packages) python setuptools; + sensible-editor = writeShellScript "sensible-editor" '' + exec ''${EDITOR-${nano}/bin/nano} "$@" + ''; in stdenv.mkDerivation rec { - version = "2.16.8"; + version = "2.22.2"; pname = "debian-devscripts"; src = fetchurl { url = "mirror://debian/pool/main/d/devscripts/devscripts_${version}.tar.xz"; - sha256 = "0xy1nvqrnifx46g8ch69pk31by0va6hn10wpi1fkrsrgncanjjh1"; + hash = "sha256-Fflalt2JxqLS0gq0wy88pXCqiNvHj7sfP7fLwdSmUCs="; }; - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ xz dpkg libxslt python setuptools curl gnupg diffutils ] ++ + postPatch = '' + substituteInPlace scripts/Makefile --replace /usr/share/dpkg ${dpkg}/share/dpkg + substituteInPlace scripts/debrebuild.pl --replace /usr/bin/perl ${perlPackages.perl}/bin/perl + patchShebangs scripts + ''; + + nativeBuildInputs = [ makeWrapper pkg-config ]; + buildInputs = [ xz dpkg libxslt python setuptools curl gnupg diffutils bash-completion help2man ] ++ (with perlPackages; [ perl CryptSSLeay LWP TimeDate DBFile FileDesktopEntry ParseDebControl LWPProtocolHttps ]); preConfigure = '' @@ -31,6 +40,7 @@ in stdenv.mkDerivation rec { -e "s@/usr/bin/diff@${diffutils}/bin/diff@g" \ -e "s@/usr/bin/gpgv(2|)@${gnupg}/bin/gpgv@g" \ -e "s@(command -v|/usr/bin/)curl@${curl.bin}/bin/curl@g" \ + -e "s@sensible-editor@${sensible-editor}@g" \ -i {} + sed -e "s@/usr/share/sgml/[^ ]*/manpages/docbook.xsl@${docbook_xsl}/xml/xsl/docbook/manpages/docbook.xsl@" -i scripts/Makefile sed -r \ @@ -53,7 +63,7 @@ in stdenv.mkDerivation rec { wrapProgram "$i" \ --prefix PERL5LIB : "$PERL5LIB" \ --prefix PERL5LIB : "$out/share/devscripts" \ - --prefix PYTHONPATH : "$out/lib/python3.4/site-packages" \ + --prefix PYTHONPATH : "$out/${python.sitePackages}" \ --prefix PATH : "${dpkg}/bin" done ''; diff --git a/pkgs/tools/misc/diffoscope/default.nix b/pkgs/tools/misc/diffoscope/default.nix index 2fbdb14e7016d..1df7ef832b004 100644 --- a/pkgs/tools/misc/diffoscope/default.nix +++ b/pkgs/tools/misc/diffoscope/default.nix @@ -11,11 +11,11 @@ # Note: when upgrading this package, please run the list-missing-tools.sh script as described below! python3Packages.buildPythonApplication rec { pname = "diffoscope"; - version = "228"; + version = "229"; src = fetchurl { url = "https://diffoscope.org/archive/diffoscope-${version}.tar.bz2"; - sha256 = "sha256-fzIjuQEYOQPscQeVCV5gj6PmaVZcrjiOai/UA4279p4="; + sha256 = "sha256-IyTBwlVqOIXERdjvZPTwxhIBPOn8Dt7QbvfBazj5J/A="; }; outputs = [ "out" "man" ]; diff --git a/pkgs/tools/misc/esphome/default.nix b/pkgs/tools/misc/esphome/default.nix index 7f3ba8ea31ac0..9aaf184890df2 100644 --- a/pkgs/tools/misc/esphome/default.nix +++ b/pkgs/tools/misc/esphome/default.nix @@ -15,14 +15,14 @@ let in with python.pkgs; buildPythonApplication rec { pname = "esphome"; - version = "2022.12.1"; + version = "2022.12.3"; format = "setuptools"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-gDAwZhfkXMqU4dbowpPhNl52Kg3Kx9lgBNzhzkQPrN0="; + hash = "sha256-9yyfcygEmnOcaooSg9bmGGOP2aph0i6d/Ot4nGlTPw4="; }; postPatch = '' @@ -52,6 +52,7 @@ with python.pkgs; buildPythonApplication rec { kconfiglib paho-mqtt pillow + platformio protobuf pyserial pyyaml diff --git a/pkgs/tools/misc/flitter/default.nix b/pkgs/tools/misc/flitter/default.nix index a46b3b72abed5..34ae369350f92 100644 --- a/pkgs/tools/misc/flitter/default.nix +++ b/pkgs/tools/misc/flitter/default.nix @@ -11,7 +11,7 @@ ocamlPackages.buildDunePackage rec { # request to tag releases: https://github.com/alexozer/flitter/issues/34 version = "unstable-2020-10-05"; - useDune2 = true; + duneVersion = "3"; src = fetchFromGitHub { owner = "alexozer"; diff --git a/pkgs/tools/misc/fzf/default.nix b/pkgs/tools/misc/fzf/default.nix index 0ea167a5053c3..bf1884d311ee1 100644 --- a/pkgs/tools/misc/fzf/default.nix +++ b/pkgs/tools/misc/fzf/default.nix @@ -1,4 +1,6 @@ -{ lib +{ stdenv +, lib +, pkgs , buildGoModule , fetchFromGitHub , writeText @@ -6,7 +8,20 @@ , installShellFiles , ncurses , perl +, glibcLocales }: + +let + # on Linux, wrap perl in the bash completion scripts with the glibc locales, + # so that using the shell completion (ctrl+r, etc) doesn't result in ugly + # warnings on non-nixos machines + ourPerl = if stdenv.isDarwin then perl else ( + pkgs.writers.writeBashBin "perl" '' + #!${pkgs.runtimeShell} + export LOCALE_ARCHIVE="${glibcLocales}/lib/locale/locale-archive" + exec ${perl}/bin/perl "$@" + ''); +in buildGoModule rec { pname = "fzf"; version = "0.35.1"; @@ -42,7 +57,7 @@ buildGoModule rec { # Has a sneaky dependency on perl # Include first args to make sure we're patching the right thing substituteInPlace shell/key-bindings.bash \ - --replace " perl -n " " ${perl}/bin/perl -n " + --replace " perl -n " " ${ourPerl}/bin/perl -n " ''; postInstall = '' diff --git a/pkgs/tools/misc/gosu/default.nix b/pkgs/tools/misc/gosu/default.nix index 80daf996b8559..df42c6ea94955 100644 --- a/pkgs/tools/misc/gosu/default.nix +++ b/pkgs/tools/misc/gosu/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gosu"; - version = "1.14"; + version = "1.16"; src = fetchFromGitHub { owner = "tianon"; repo = "gosu"; rev = version; - sha256 = "sha256-qwoHQB37tY8Pz8CHleYZI+SGkbHG7P/vgfXVMSyqi10="; + hash = "sha256-UfrhrwsnDT7pfizQtQzqv/1FTMBTrk3qmtiR7ffwwhc="; }; - vendorSha256 = "sha256-yxrOLCtSrY/a84N5yRWGUx1L425TckjvRyn/rtkzsRY="; + vendorHash = "sha256-3HIAPI1bbfwE2/cUsQnp2Vz2uvlvSFDUrp2xuGNr8Gk="; ldflags = [ "-d" "-s" "-w" ]; @@ -22,8 +22,8 @@ buildGoModule rec { meta = with lib; { description = "Tool that avoids TTY and signal-forwarding behavior of sudo and su"; homepage = "https://github.com/tianon/gosu"; - license = lib.licenses.gpl3; + license = licenses.asl20; maintainers = with maintainers; [ aaronjheng ]; - platforms = lib.platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/misc/iay/default.nix b/pkgs/tools/misc/iay/default.nix new file mode 100644 index 0000000000000..9c8b0a47ab867 --- /dev/null +++ b/pkgs/tools/misc/iay/default.nix @@ -0,0 +1,47 @@ +{ lib +, stdenv +, fetchFromGitHub +, rustPlatform +, openssl +, pkg-config +, AppKit +, Cocoa +, Foundation +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "iay"; + version = "0.4.0"; + + src = fetchFromGitHub { + owner = "aaqaishtyaq"; + repo = pname; + rev = "v${version}"; + sha256 = "0r2yp34gxkh32amrysfj1jg543dh0kyqxzcx0zyi6a8y9232d8ky"; + }; + + cargoHash = "sha256-SMqiwM6LrXXjV4Mb2BY9WbeKKPkxiYxPyZ4aepVIAqU="; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ + openssl + ] + ++ lib.optionals stdenv.isDarwin [ + AppKit + Cocoa + Foundation + Security + ]; + + NIX_LDFLAGS = lib.optionals stdenv.isDarwin [ "-framework" "AppKit" ]; + + meta = with lib; { + description = + "Minimalistic, blazing-fast, and extendable prompt for bash and zsh"; + homepage = "https://github.com/aaqaishtyaq/iay"; + license = licenses.mit; + maintainers = with maintainers; [ aaqaishtyaq ]; + }; +} diff --git a/pkgs/tools/misc/infracost/default.nix b/pkgs/tools/misc/infracost/default.nix index 99693740dc766..95088e00c9abd 100644 --- a/pkgs/tools/misc/infracost/default.nix +++ b/pkgs/tools/misc/infracost/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "infracost"; - version = "0.10.14"; + version = "0.10.15"; src = fetchFromGitHub { owner = "infracost"; rev = "v${version}"; repo = "infracost"; - sha256 = "sha256-5fgJEkAb9F7krTWlRssG+AqViFuMu2NkYUr78b/9oA8="; + sha256 = "sha256-Ddw778u1qSNRKaf3Yvn0HXBag/ji7yTlGbx7FP8CUas="; }; vendorSha256 = "sha256-S51NwHeJm3gSJ+9r8RgGY3zHJFddI8uNfYSpQl33M3M="; diff --git a/pkgs/tools/misc/nb/default.nix b/pkgs/tools/misc/nb/default.nix index 1977cef48157b..955d63b6059b2 100644 --- a/pkgs/tools/misc/nb/default.nix +++ b/pkgs/tools/misc/nb/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "nb"; - version = "6.11.2"; + version = "7.2.0"; src = fetchFromGitHub { owner = "xwmx"; repo = "nb"; rev = version; - sha256 = "sha256-FHyI9Bwci2spMz5DiSyVsJ5Vz1t/NJ3gsg13fBbanpc="; + sha256 = "sha256-/ibKlmLWmW1Gp95Bd/23CkRs0XVsy6gScmws3gUlszo="; }; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/misc/nomino/default.nix b/pkgs/tools/misc/nomino/default.nix index 01c6b43069e22..fa86cbc1a8fcc 100644 --- a/pkgs/tools/misc/nomino/default.nix +++ b/pkgs/tools/misc/nomino/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "nomino"; - version = "1.2.2"; + version = "1.3.0"; src = fetchFromGitHub { owner = "yaa110"; repo = pname; rev = version; - sha256 = "sha256-Zczj2HQkm6/hXH24pOXYT5r7RS/SI/39s5XtNnc7f9o="; + sha256 = "sha256-CnI1vPUdjU5Npb10cMpL0pImbOoQ4r5v/Q0EFKy0yPc="; }; - cargoSha256 = "sha256-mjekXjHhi8gxjD47DmTs3TGtnXp3FbxiIq7Uo+rOvKc="; + cargoSha256 = "sha256-8mHMpxypBHiCEW6WR1kvuE5NtaL1mgZrCD8tvcrVLDQ="; meta = with lib; { description = "Batch rename utility for developers"; diff --git a/pkgs/tools/misc/open-pdf-sign/default.nix b/pkgs/tools/misc/open-pdf-sign/default.nix new file mode 100644 index 0000000000000..ca72a2ca6b17e --- /dev/null +++ b/pkgs/tools/misc/open-pdf-sign/default.nix @@ -0,0 +1,30 @@ +{ lib, stdenv, fetchurl, makeWrapper, jre }: + +stdenv.mkDerivation rec { + version = "0.1.0"; + pname = "open-pdf-sign"; + + src = fetchurl { + url = "https://github.com/open-pdf-sign/open-pdf-sign/releases/download/v${version}/open-pdf-sign.jar"; + sha256 = "AfxpqDLIycXMQmYexRoFh5DD/UCBHrnGSMjfjljvKs4="; + }; + + nativeBuildInputs = [ makeWrapper ]; + + buildCommand = '' + install -Dm644 $src $out/lib/open-pdf-sign.jar + + mkdir -p $out/bin + makeWrapper ${jre}/bin/java $out/bin/open-pdf-sign \ + --add-flags "-jar $out/lib/open-pdf-sign.jar" + ''; + + meta = with lib; { + description = "Digitally sign PDF files from your commandline"; + homepage = "https://github.com/open-pdf-sign/open-pdf-sign"; + sourceProvenance = with sourceTypes; [ binaryBytecode ]; + license = licenses.asl20; + maintainers = with maintainers; [ drupol ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/tools/misc/remind/default.nix b/pkgs/tools/misc/remind/default.nix index 99684c9a326d0..77e13b0b154c9 100644 --- a/pkgs/tools/misc/remind/default.nix +++ b/pkgs/tools/misc/remind/default.nix @@ -16,11 +16,11 @@ let in tcl.mkTclDerivation rec { pname = "remind"; - version = "04.01.00"; + version = "04.02.01"; src = fetchurl { url = "https://dianne.skoll.ca/projects/remind/download/remind-${version}.tar.gz"; - sha256 = "sha256-P0aDmEHkxMGk3gwgDwFIlNNoLOfSZfOHU1VYQkOLQGE="; + sha256 = "sha256-RknG1SyKKYSMLWihR2GM8MVROJx0E0E1gD+vSLv6uk0="; }; propagatedBuildInputs = tclLibraries; diff --git a/pkgs/tools/misc/snapper/default.nix b/pkgs/tools/misc/snapper/default.nix index 2a32690c1d2a3..c757882c12a27 100644 --- a/pkgs/tools/misc/snapper/default.nix +++ b/pkgs/tools/misc/snapper/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "snapper"; - version = "0.10.3"; + version = "0.10.4"; src = fetchFromGitHub { owner = "openSUSE"; repo = "snapper"; rev = "v${version}"; - sha256 = "sha256-pi2S5dKUB2pjBQjaSJr789Ke5WU1uKp1RYMPKd0W4J0="; + sha256 = "sha256-Eq9b49zEIb3wMHUw9/jpfYDaMXBY5JHZ2u5RTTtD5I8="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/misc/tio/default.nix b/pkgs/tools/misc/tio/default.nix index 7134658144221..6c8afceb7ce7a 100644 --- a/pkgs/tools/misc/tio/default.nix +++ b/pkgs/tools/misc/tio/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "tio"; - version = "2.4"; + version = "2.5"; src = fetchFromGitHub { owner = "tio"; repo = "tio"; rev = "v${version}"; - hash = "sha256-cRwjg0+p+1u+tdG+skqGWzxwM375P4aUsF4JVGgCXOI="; + hash = "sha256-7mVLfzguQ7eNIFTJMLJyoM+/pveGO88j2JUEOqvnqvk="; }; nativeBuildInputs = [ meson ninja pkg-config inih bash-completion ]; diff --git a/pkgs/tools/misc/vector/default.nix b/pkgs/tools/misc/vector/default.nix index e5186c17b20ea..e3f82253e2790 100644 --- a/pkgs/tools/misc/vector/default.nix +++ b/pkgs/tools/misc/vector/default.nix @@ -45,6 +45,11 @@ rustPlatform.buildRustPackage { sha256 = pinData.sha256; }; + patches = [ + # replace with https://github.com/vectordotdev/vector/pull/15093 when ready + ./fix-for-rust-1.66.diff + ]; + cargoSha256 = pinData.cargoSha256; nativeBuildInputs = [ pkg-config cmake perl ]; buildInputs = [ oniguruma openssl protobuf rdkafka zstd ] diff --git a/pkgs/tools/misc/vector/fix-for-rust-1.66.diff b/pkgs/tools/misc/vector/fix-for-rust-1.66.diff new file mode 100644 index 0000000000000..1ad2c6854edf5 --- /dev/null +++ b/pkgs/tools/misc/vector/fix-for-rust-1.66.diff @@ -0,0 +1,13 @@ +diff --git a/src/sources/aws_kinesis_firehose/filters.rs b/src/sources/aws_kinesis_firehose/filters.rs +index ac33682..fe65ed4 100644 +--- a/src/sources/aws_kinesis_firehose/filters.rs ++++ b/src/sources/aws_kinesis_firehose/filters.rs +@@ -28,7 +28,7 @@ pub fn firehose( + acknowledgements: bool, + out: SourceSender, + log_namespace: LogNamespace, +-) -> impl Filter<Extract = impl warp::Reply, Error = Infallible> + Clone { ++) -> impl Filter<Extract = (impl warp::Reply,), Error = Infallible> + Clone { + let bytes_received = register!(BytesReceived::from(Protocol::HTTP)); + let context = handlers::Context { + compression: record_compression, diff --git a/pkgs/tools/misc/vttest/default.nix b/pkgs/tools/misc/vttest/default.nix index 33091b4181188..0f3096cc4b06a 100644 --- a/pkgs/tools/misc/vttest/default.nix +++ b/pkgs/tools/misc/vttest/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "vttest"; - version = "20220827"; + version = "20221111"; src = fetchurl { urls = [ "https://invisible-mirror.net/archives/${pname}/${pname}-${version}.tgz" "ftp://ftp.invisible-island.net/${pname}/${pname}-${version}.tgz" ]; - sha256 = "sha256-Vyaq5YE3dzzmzgH+aob8D4PEd2PjBIi/81ubxPyUbOI="; + sha256 = "sha256-asC/ZqWAc3gP3rdGMRT1HYCxzJ6O8djHNjBT/Nwxgac="; }; meta = with lib; { diff --git a/pkgs/tools/networking/checkip/default.nix b/pkgs/tools/networking/checkip/default.nix index 1096bf899dc6d..3b9f12bdb4935 100644 --- a/pkgs/tools/networking/checkip/default.nix +++ b/pkgs/tools/networking/checkip/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "checkip"; - version = "0.44.0"; + version = "0.44.2"; src = fetchFromGitHub { owner = "jreisinger"; repo = pname; rev = "v${version}"; - sha256 = "sha256-B+gi3BNEQUZL5McSPnSRyUssa9AhnMHswfmCrK0BP2o="; + sha256 = "sha256-jU0k6V3NoTdv/62VVa33WEo65eiYTCti0cWalsAiQwI="; }; - vendorSha256 = "sha256-bFhSMjm9rqUUbCV9keeXm+yhzQMKrYKs1DbCt53J8aM="; + vendorSha256 = "sha256-lZZH9QyqPeO1m5UET9HUnxOzzz3M9y6QkL36T6BUia0="; # Requires network doCheck = false; diff --git a/pkgs/tools/networking/ipv6calc/default.nix b/pkgs/tools/networking/ipv6calc/default.nix index 8489ffd6f7074..ad52d99293189 100644 --- a/pkgs/tools/networking/ipv6calc/default.nix +++ b/pkgs/tools/networking/ipv6calc/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "ipv6calc"; - version = "4.0.1"; + version = "4.0.2"; src = fetchFromGitHub { owner = "pbiering"; repo = pname; rev = version; - sha256 = "sha256-mfJ6ADjGjECyoW5ELnUzXiJHHiwEDHzeOKCGSmGnLno="; + sha256 = "sha256-p/er/Ehyu7PqmikMIKPQBQ0/F81d8iiKdmLXLz+8pus="; }; buildInputs = [ diff --git a/pkgs/tools/networking/magic-wormhole-rs/default.nix b/pkgs/tools/networking/magic-wormhole-rs/default.nix index 9d82cd36bf520..530ac45ab2b3f 100644 --- a/pkgs/tools/networking/magic-wormhole-rs/default.nix +++ b/pkgs/tools/networking/magic-wormhole-rs/default.nix @@ -3,28 +3,38 @@ , fetchFromGitHub , rustPlatform , libxcb +, installShellFiles , Security , AppKit }: rustPlatform.buildRustPackage rec { pname = "magic-wormhole-rs"; - version = "0.5.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "magic-wormhole"; repo = "magic-wormhole.rs"; rev = version; - sha256 = "sha256-+H/IzMxiGz7UVVkEWpmyBepGET9doQFNDvOCZEMF0p4="; + sha256 = "sha256-gNHtlbYWQvgboIG++N1680a4ql66PTF45DJGz521zzk="; }; - cargoSha256 = "sha256-pRdb5NSqueHmK5vbZfmbDGOz7NQvmUI/pj9KgShiIn0="; + cargoSha256 = "sha256-powJrbVVBWtIg0CV7ZdhaVIQA+VhEPtPCts7f8Sl1VY="; buildInputs = [ libxcb ] ++ lib.optionals stdenv.isDarwin [ Security AppKit ]; + nativeBuildInputs = [ installShellFiles ]; + # all tests involve networking and are bound fail doCheck = false; + postInstall = '' + installShellCompletion --cmd wormhole-rs \ + --bash <($out/bin/wormhole-rs completion bash) \ + --fish <($out/bin/wormhole-rs completion fish) \ + --zsh <($out/bin/wormhole-rs completion zsh) + ''; + meta = with lib; { description = "Rust implementation of Magic Wormhole, with new features and enhancements"; homepage = "https://github.com/magic-wormhole/magic-wormhole.rs"; diff --git a/pkgs/tools/networking/miniupnpc/default.nix b/pkgs/tools/networking/miniupnpc/default.nix index 6f22d6fb63397..4a11226af02c4 100644 --- a/pkgs/tools/networking/miniupnpc/default.nix +++ b/pkgs/tools/networking/miniupnpc/default.nix @@ -38,5 +38,6 @@ stdenv.mkDerivation rec { description = "A client that implements the UPnP Internet Gateway Device (IGD) specification"; platforms = with platforms; linux ++ freebsd ++ darwin; license = licenses.bsd3; + mainProgram = "upnpc"; }; } diff --git a/pkgs/tools/networking/tox-node/default.nix b/pkgs/tools/networking/tox-node/default.nix index 80d20a7ce7f79..79586e9c19951 100644 --- a/pkgs/tools/networking/tox-node/default.nix +++ b/pkgs/tools/networking/tox-node/default.nix @@ -1,42 +1,27 @@ -{ lib, rustPlatform, fetchFromGitHub -, libsodium, openssl -, pkg-config -, fetchpatch -}: +{ lib, rustPlatform, fetchFromGitHub, nix-update-script }: -with rustPlatform; - -buildRustPackage rec { +rustPlatform.buildRustPackage rec { pname = "tox-node"; - version = "0.1.1"; + version = "0.2.0"; src = fetchFromGitHub { owner = "tox-rs"; - repo = "tox-node"; + repo = "tox"; rev = "v${version}"; - sha256 = "sha256-tB6v2NEBdTNHf89USdQOr/pV0mbxxb8ftOYPPJMvz5Y="; + sha256 = "sha256-3ZRpri3WxwHjMq88TxRJAaTXMui8N1uLek+q8g5PGD4="; }; - cargoPatches = [ - # update cargo lock - (fetchpatch { - url = "https://github.com/tox-rs/tox-node/commit/63712d49d84e55df7bba9710e129780bbc636de3.patch"; - sha256 = "sha256-jI6b5IHsAuGuM+7sPCdFnOOuV6K9rBmc5QqU5x72Fl0="; - }) - ]; - - buildInputs = [ libsodium openssl ]; - nativeBuildInputs = [ pkg-config ]; + buildAndTestSubdir = "tox_node"; - SODIUM_USE_PKG_CONFIG = "yes"; + cargoSha256 = "sha256-L5IvYA32W8cTnuWjeljge5X+LZ912ugtcvEKXLqYZ+k="; - doCheck = false; - - cargoSha256 = "sha256-yHsYjKJJNjepvcNszj4XQ0DbOY3AEJMZOnz0cAiwO1A="; + passthru.updateScript = nix-update-script { + attrPath = pname; + }; meta = with lib; { description = "A server application to run tox node written in pure Rust"; - homepage = "https://github.com/tox-rs/tox-node"; + homepage = "https://github.com/tox-rs/tox"; license = [ licenses.gpl3Plus ]; platforms = platforms.linux; maintainers = with maintainers; [ suhr kurnevsky ]; diff --git a/pkgs/tools/networking/xray/default.nix b/pkgs/tools/networking/xray/default.nix index be95d26fa34f9..5b390c7dd42c3 100644 --- a/pkgs/tools/networking/xray/default.nix +++ b/pkgs/tools/networking/xray/default.nix @@ -20,16 +20,16 @@ let in buildGoModule rec { pname = "xray"; - version = "1.6.1"; + version = "1.6.6-2"; src = fetchFromGitHub { owner = "XTLS"; repo = "Xray-core"; rev = "v${version}"; - sha256 = "0g2bmy522lhip0rgb3hqyi3bidf4ljyjvvv3n1kb6lvm0p3br51b"; + sha256 = "sha256-nNG1HNsV/ITWdM9a4KkV44Oq/P92yD/oQjO7+pSBX38="; }; - vendorSha256 = "sha256-QAF/05/5toP31a/l7mTIetFhXuAKsT69OI1K/gMXei0="; + vendorSha256 = "sha256-64pyrhPplki0R+rsjh6pi+PCOzWVbES40r0Z1Vhk44o="; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/package-management/nixpkgs-review/default.nix b/pkgs/tools/package-management/nixpkgs-review/default.nix index e65d28a6af9b8..95a86032c13e6 100644 --- a/pkgs/tools/package-management/nixpkgs-review/default.nix +++ b/pkgs/tools/package-management/nixpkgs-review/default.nix @@ -12,13 +12,13 @@ python3.pkgs.buildPythonApplication rec { pname = "nixpkgs-review"; - version = "2.7.0"; + version = "2.8.0"; src = fetchFromGitHub { owner = "Mic92"; repo = "nixpkgs-review"; rev = version; - sha256 = "sha256-hGOcLrVPb+bSNA72ZfKE9Mjm2dr/qnuaCkjveHXPcws="; + sha256 = "sha256-v8IRRmONb10sPndfsuaUYMrGbbosj48cbfgANZCtIN0="; }; makeWrapperArgs = @@ -37,7 +37,8 @@ python3.pkgs.buildPythonApplication rec { meta = with lib; { description = "Review pull-requests on https://github.com/NixOS/nixpkgs"; homepage = "https://github.com/Mic92/nixpkgs-review"; + changelog = "https://github.com/Mic92/nixpkgs-review/releases/tag/${version}"; license = licenses.mit; - maintainers = with maintainers; [ mic92 SuperSandro2000 ]; + maintainers = with maintainers; [ figsoda mic92 SuperSandro2000 ]; }; } diff --git a/pkgs/tools/security/bitwarden/default.nix b/pkgs/tools/security/bitwarden/default.nix index f7ea2c184e650..f265444f53abd 100644 --- a/pkgs/tools/security/bitwarden/default.nix +++ b/pkgs/tools/security/bitwarden/default.nix @@ -14,11 +14,11 @@ stdenv.mkDerivation rec { pname = "bitwarden"; - version = "2022.10.0"; + version = "2022.12.0"; src = fetchurl { url = "https://github.com/bitwarden/clients/releases/download/desktop-v${version}/Bitwarden-${version}-amd64.deb"; - sha256 = "sha256-KJBRaxrHhoWEMrt4tVg6elVX7Z2AXi9mD1RJDzbRhdI="; + sha256 = "sha256-deQG1GEYmnQmO5+jASsiQmDphb+4Jyq9aSn/A4z++uE="; }; desktopItem = makeDesktopItem { diff --git a/pkgs/tools/security/cve-bin-tool/default.nix b/pkgs/tools/security/cve-bin-tool/default.nix index ac3771510c38f..d36c706e444f5 100644 --- a/pkgs/tools/security/cve-bin-tool/default.nix +++ b/pkgs/tools/security/cve-bin-tool/default.nix @@ -27,13 +27,13 @@ }: buildPythonApplication rec { pname = "cve-bin-tool"; - version = "3.1.1"; + version = "3.1.2"; src = fetchFromGitHub { owner = "intel"; repo = "cve-bin-tool"; - rev = "v${version}"; - sha256 = "0nz3ax3ldnrzk8694x0p743g5h2zply29ljpn21llbc7ca27zdv9"; + rev = "refs/tags/v${version}"; + sha256 = "sha256-P2GhGQxa6Y8BmMqFHXSfmqN58E1FbXD9Ndwwr+upK8Q="; }; # Wants to open a sqlite database, access the internet, etc diff --git a/pkgs/tools/security/enum4linux-ng/default.nix b/pkgs/tools/security/enum4linux-ng/default.nix index 5ae5d53c5f270..d583286939323 100644 --- a/pkgs/tools/security/enum4linux-ng/default.nix +++ b/pkgs/tools/security/enum4linux-ng/default.nix @@ -9,13 +9,13 @@ buildPythonApplication rec { pname = "enum4linux-ng"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "cddmp"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-9J7MiSxfAuzp1M9v4MMWOnK0/lg/X7I4pC6C2yMpMr0="; + hash = "sha256-InE0VRk9hK7JEKL202/2RclrJHAHFAol3DxKnVA+lq4="; }; propagatedBuildInputs = [ diff --git a/pkgs/tools/security/feroxbuster/default.nix b/pkgs/tools/security/feroxbuster/default.nix index a66991b14d235..985d328decb8c 100644 --- a/pkgs/tools/security/feroxbuster/default.nix +++ b/pkgs/tools/security/feroxbuster/default.nix @@ -18,6 +18,11 @@ rustPlatform.buildRustPackage rec { hash = "sha256-B6FeY5pWW5+y/0HlVedkm8ol2z9GXgEYe5j7/uMhqsw="; }; + # disable linker overrides on aarch64-linux + postPatch = '' + rm .cargo/config + ''; + cargoSha256 = "sha256-OFgt8yu2wlvkP/wjlmRRl8UyD9MUx9/0Rcs6K8jLkjo="; OPENSSL_NO_VENDOR = true; @@ -38,10 +43,10 @@ rustPlatform.buildRustPackage rec { meta = with lib; { description = "Fast, simple, recursive content discovery tool"; homepage = "https://github.com/epi052/feroxbuster"; + changelog = "https://github.com/epi052/feroxbuster/releases/tag/v${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; - # never built on aarch64-linux since first introduction in nixpkgs - broken = stdenv.isLinux && stdenv.isAarch64; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/security/gobuster/default.nix b/pkgs/tools/security/gobuster/default.nix index 32030fe0ecf58..8dd91679d0934 100644 --- a/pkgs/tools/security/gobuster/default.nix +++ b/pkgs/tools/security/gobuster/default.nix @@ -5,20 +5,21 @@ buildGoModule rec { pname = "gobuster"; - version = "3.3.0"; + version = "3.4.0"; src = fetchFromGitHub { owner = "OJ"; repo = "gobuster"; rev = "v${version}"; - hash = "sha256-bh48TAhK0HwwNvE5Fr4KtCI+Nz1Wb9vaV916RzGG8/I="; + hash = "sha256-GSpCmJx60DMGr6hDaL//i0gteJniU2jJO+sEDp+eUvg="; }; - vendorHash = "sha256-fuz9Sj/wKJWp7Q/g5LBb44a50QKGMCPHJ38TBhTCn00="; + vendorHash = "sha256-xY+RoM19bsoSCRJk7caMjU3jkUoWkOYRYKHfQjiVVPo="; meta = with lib; { description = "Tool used to brute-force URIs, DNS subdomains, Virtual Host names on target web servers"; homepage = "https://github.com/OJ/gobuster"; + changelog = "https://github.com/OJ/gobuster/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ pamplemousse ]; }; diff --git a/pkgs/tools/security/gopass/default.nix b/pkgs/tools/security/gopass/default.nix index 471028e6c8e02..f461a65485bce 100644 --- a/pkgs/tools/security/gopass/default.nix +++ b/pkgs/tools/security/gopass/default.nix @@ -13,7 +13,7 @@ buildGoModule rec { pname = "gopass"; - version = "1.15.0"; + version = "1.15.2"; nativeBuildInputs = [ installShellFiles makeWrapper ]; @@ -21,10 +21,10 @@ buildGoModule rec { owner = "gopasspw"; repo = pname; rev = "v${version}"; - hash = "sha256-1nf8nzSOI22z/lvhS8Urq6B6OUMcFFrPZoHIbRINz4c="; + hash = "sha256-UvHLbbV75mrWDmlsM382gBhgOpgf5k9NmAQtVbePD04="; }; - vendorHash = "sha256-1ILZtvgwn60NIaOy7zRcYA/PFrnLSb7ykAUd/WrGYtQ="; + vendorHash = "sha256-2YycEsEsvBKb30LkQx38Rm3nxq5q6KN0Pb1FBXco0PU="; subPackages = [ "." ]; diff --git a/pkgs/tools/security/gopass/git-credential.nix b/pkgs/tools/security/gopass/git-credential.nix index 27fcade3368dc..0b50046491031 100644 --- a/pkgs/tools/security/gopass/git-credential.nix +++ b/pkgs/tools/security/gopass/git-credential.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "git-credential-gopass"; - version = "1.15.0"; + version = "1.15.2"; src = fetchFromGitHub { owner = "gopasspw"; repo = pname; rev = "v${version}"; - hash = "sha256-o1kkS8JlPFIiwm3nQLMuERcb4NC3v8FIG0kYGrGzkbA="; + hash = "sha256-HuqN/hl4weUr/PLyCE9dyrXADPHJW2XryQWWCMwgJ8k="; }; - vendorHash = "sha256-KPCmYNSMa8F9xtStEyN5xho2/OF1ZqVFmLexHV3wJzM="; + vendorHash = "sha256-1pQ+f+m+cff6M0sfydaqGyvXqS6lyi9mfi9Pl4tynhU="; subPackages = [ "." ]; diff --git a/pkgs/tools/security/gopass/hibp.nix b/pkgs/tools/security/gopass/hibp.nix index 986809beb0455..24bfab9d3cf37 100644 --- a/pkgs/tools/security/gopass/hibp.nix +++ b/pkgs/tools/security/gopass/hibp.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "gopass-hibp"; - version = "1.15.0"; + version = "1.15.2"; src = fetchFromGitHub { owner = "gopasspw"; repo = pname; rev = "v${version}"; - hash = "sha256-VBi4Lk1lQb/p2iyY2EbRuizNATu/MJ/PErfUT53enrE="; + hash = "sha256-2F1OqVxXrQpwg2M1o8gQzczXI2JKVFCA1K6kGUc+e5U="; }; - vendorHash = "sha256-PRSl1JkEb4yuQWeNAfkr8Iq2cYMVngUl9nLXEkHd7GU="; + vendorHash = "sha256-3KYEn4+YI5KwAlfokUF5hU801xylWVtmJwocVl6QfhM="; subPackages = [ "." ]; diff --git a/pkgs/tools/security/gopass/jsonapi.nix b/pkgs/tools/security/gopass/jsonapi.nix index dcd2e10dab2fd..e06b8c654f20e 100644 --- a/pkgs/tools/security/gopass/jsonapi.nix +++ b/pkgs/tools/security/gopass/jsonapi.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "gopass-jsonapi"; - version = "1.15.0"; + version = "1.15.2"; src = fetchFromGitHub { owner = "gopasspw"; repo = pname; rev = "v${version}"; - hash = "sha256-0pCk82na0lWEaRlHhf/Q2BC3K2/sLBHZzKvCN86TMMI="; + hash = "sha256-Y1Ol46/7uct7Xap1mV/sqG82khlylVvk5Hsvj6d9eLU="; }; - vendorHash = "sha256-fuazCxWJAnxUsxakN2VT9DWNwRO/s89G1sJXk48uO34="; + vendorHash = "sha256-dk6bdJkl9PKBbCjEL1IUHp0EmTZ3ZFVbmnluKVWZ1P4="; subPackages = [ "." ]; diff --git a/pkgs/tools/security/gopass/summon.nix b/pkgs/tools/security/gopass/summon.nix index 2bca19acb77f6..a45702f283445 100644 --- a/pkgs/tools/security/gopass/summon.nix +++ b/pkgs/tools/security/gopass/summon.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "gopass-summon-provider"; - version = "1.15.0"; + version = "1.15.2"; src = fetchFromGitHub { owner = "gopasspw"; repo = pname; rev = "v${version}"; - hash = "sha256-cF9nwFmBpK/Q3ZIkYos8PSQJmRAnqXCrVcfb72TXpdE="; + hash = "sha256-tcRdb6zkFO/fhCm9YE7qDPYROuOrsN2BeeX+TtTnaHc="; }; - vendorHash = "sha256-KPCmYNSMa8F9xtStEyN5xho2/OF1ZqVFmLexHV3wJzM="; + vendorHash = "sha256-1pQ+f+m+cff6M0sfydaqGyvXqS6lyi9mfi9Pl4tynhU="; subPackages = [ "." ]; diff --git a/pkgs/tools/security/grap/default.nix b/pkgs/tools/security/grap/default.nix new file mode 100644 index 0000000000000..a0572758aae6f --- /dev/null +++ b/pkgs/tools/security/grap/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchFromGitHub, boost, libseccomp, flex, python3Packages, swig4, bison, cmake, python3 }: + +stdenv.mkDerivation rec { + pname = "grap"; + version = "1.3.1"; + + src = fetchFromGitHub { + owner = "QuoSecGmbH"; + repo = "grap"; + rev = "v${version}"; + sha256 = "1fkdi7adfffxg1k4h6r9i69i3wi93s44c1j4cvr69blxsfh0mcnc"; + }; + + nativeBuildInputs = [ + bison + cmake + flex + python3 + ]; + + buildInputs = [ + boost.all + libseccomp + swig4 + ]; + + strictDeps = true; + + cmakeFlags = [ + "-DPYTHON_SITE_DIR=$out/${python3.sitePackages}" + "../src" + ]; + + postPatch = '' + substituteInPlace src/tools/grap-match/CMakeLists.txt --replace "/usr/local/bin" "$out/bin" + substituteInPlace src/tools/grap/CMakeLists.txt --replace "/usr/local/bin" "$out/bin" + ''; + + meta = with lib; { + description = "Define and match graph patterns within binaries"; + longDescription = '' + grap takes patterns and binary files, uses a Casptone-based disassembler to obtain the control flow graphs from the binaries, then matches the patterns against them. + + Patterns are user-defined graphs with instruction conditions ("opcode is xor and arg1 is eax") and repetition conditions (3 identical instructions, basic blocks...). + ''; + homepage = "https://github.com/QuoSecGmbH/grap/"; + license = licenses.mit; + maintainers = [ maintainers.s1341 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/tools/security/iaito/default.nix b/pkgs/tools/security/iaito/default.nix index ed4759f16b44b..2047b311222ed 100644 --- a/pkgs/tools/security/iaito/default.nix +++ b/pkgs/tools/security/iaito/default.nix @@ -13,21 +13,21 @@ stdenv.mkDerivation rec { pname = "iaito"; - version = "5.7.8"; + version = "5.8.0"; srcs = [ (fetchFromGitHub rec { owner = "radareorg"; repo = "iaito"; rev = version; - hash = "sha256-c36WLpVUnffeY6cXSEHvguo8BHyxaLAluN9hBKsQc0s="; + hash = "sha256-LqJu30Bp+JgB+y3MDyPVuFmEoXTpfA7K2pxv1ZCABx0="; name = repo; }) (fetchFromGitHub rec { owner = "radareorg"; repo = "iaito-translations"; - rev = "ab923335409fa298c39f0014588d78d926c6f3a2"; - hash = "sha256-qkIC67a6YRwOa2Sr16Vg6If1TmAiSKUV7hw13Wxwl/w="; + rev = "e66b3a962a7fc7dfd730764180011ecffbb206bf"; + hash = "sha256-6NRTZ/ydypsB5TwbivvwOH9TEMAff/LH69hCXTvMPp8="; name = repo; }) ]; @@ -56,6 +56,9 @@ stdenv.mkDerivation rec { radare2 ]; + # the radare2 binary package seems to not install all necessary headers. + NIX_CFLAGS_COMPILE = [ "-I" "${radare2.src}/shlr/sdb/include/sdb" ]; + postBuild = '' pushd ../../../iaito-translations make build PREFIX=$out diff --git a/pkgs/tools/security/metasploit/Gemfile b/pkgs/tools/security/metasploit/Gemfile index 87fa849c69025..44bc53c3758a4 100644 --- a/pkgs/tools/security/metasploit/Gemfile +++ b/pkgs/tools/security/metasploit/Gemfile @@ -1,4 +1,4 @@ # frozen_string_literal: true source "https://rubygems.org" -gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.2.31" +gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.2.32" diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index 66ec3d2793876..0b6562f274230 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -1,9 +1,9 @@ GIT remote: https://github.com/rapid7/metasploit-framework - revision: 2654f6f02a0ce6150e623804b9fab9576fe008f6 - ref: refs/tags/6.2.31 + revision: 70f696d7322148eba2fca49c5219dcb9a0133c6e + ref: refs/tags/6.2.32 specs: - metasploit-framework (6.2.31) + metasploit-framework (6.2.32) actionpack (~> 6.0) activerecord (~> 6.0) activesupport (~> 6.0) @@ -128,13 +128,13 @@ GEM arel-helpers (2.14.0) activerecord (>= 3.1.0, < 8) aws-eventstream (1.2.0) - aws-partitions (1.679.0) + aws-partitions (1.684.0) aws-sdk-core (3.168.4) aws-eventstream (~> 1, >= 1.0.2) aws-partitions (~> 1, >= 1.651.0) aws-sigv4 (~> 1.5) jmespath (~> 1, >= 1.6.1) - aws-sdk-ec2 (1.355.0) + aws-sdk-ec2 (1.356.0) aws-sdk-core (~> 3, >= 3.165.0) aws-sigv4 (~> 1.1) aws-sdk-iam (1.73.0) @@ -171,9 +171,9 @@ GEM http_parser.rb (>= 0.6.0) em-socksify (0.3.2) eventmachine (>= 1.0.0.beta.4) - erubi (1.11.0) + erubi (1.12.0) eventmachine (1.2.7) - faker (3.0.0) + faker (3.1.0) i18n (>= 1.8.11, < 2) faraday (2.7.2) faraday-net_http (>= 2.0, < 3.1) @@ -203,7 +203,7 @@ GEM i18n (1.12.0) concurrent-ruby (~> 1.0) io-console (0.6.0) - irb (1.6.1) + irb (1.6.2) reline (>= 0.3.0) jmespath (1.6.2) jsobfu (0.4.2) @@ -248,7 +248,7 @@ GEM webrick metasploit_payloads-mettle (1.0.20) method_source (1.0.0) - mini_portile2 (2.8.0) + mini_portile2 (2.8.1) minitest (5.16.3) mqtt (0.5.0) msgpack (1.6.0) @@ -287,9 +287,9 @@ GEM ttfunk pg (1.4.5) public_suffix (5.0.1) - puma (6.0.0) + puma (6.0.1) nio4r (~> 2.0) - racc (1.6.1) + racc (1.6.2) rack (2.2.4) rack-protection (3.0.5) rack diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index 52117de62d77e..59954f489397f 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -15,13 +15,13 @@ let }; in stdenv.mkDerivation rec { pname = "metasploit-framework"; - version = "6.2.31"; + version = "6.2.32"; src = fetchFromGitHub { owner = "rapid7"; repo = "metasploit-framework"; rev = version; - sha256 = "sha256-oifgAc1umrEOULuJzK9EboBdXIXSici8ndlhRbbHUaw="; + sha256 = "sha256-uadIhrmrvdxzp4PchPHOy9beODME0hhgNqEqGqxyAZ8="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index 470d83b7154a6..31123befc2d84 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -104,10 +104,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ijs16zjif7zkwi4wd1qffi7c5b1v5b6hnw76h8kh6vgiwj9hmmz"; + sha256 = "16jpljblpy5drx2fj8nwsw41mmwp7xkadhrigp4rsiny4lb80qg8"; type = "gem"; }; - version = "1.679.0"; + version = "1.684.0"; }; aws-sdk-core = { groups = ["default"]; @@ -124,10 +124,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1x0fg5gp7qcvfhngplb9438jv074llfb9d52jclnik8ibrrmgx8w"; + sha256 = "1l1zchxfsmbailrmjvw3s8djm20mqn0pjxf735mspp6zg3xmvyr2"; type = "gem"; }; - version = "1.355.0"; + version = "1.356.0"; }; aws-sdk-iam = { groups = ["default"]; @@ -314,10 +314,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "11bz1v1cxabm8672gabrw542zyg51dizlcvdck6vvwzagxbjv9zx"; + sha256 = "08s75vs9cxlc4r1q2bjg4br8g9wc5lc5x5vl0vv4zq5ivxsdpgi7"; type = "gem"; }; - version = "1.11.0"; + version = "1.12.0"; }; eventmachine = { groups = ["default"]; @@ -334,10 +334,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0fcrgzjvqc9fxhnn7mzvzxd41m63cil7n19mjxnisx836p0k93hl"; + sha256 = "1ppi7v8prf5856fslygvh64nwa4k2bsb9mablygb5gj0x5c7k29w"; type = "gem"; }; - version = "3.0.0"; + version = "3.1.0"; }; faraday = { groups = ["default"]; @@ -504,10 +504,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "09mbpnmfh5lwg6kcjlbyv9163pn50lfxphbra9rsws8cp04m1qj3"; + sha256 = "10qvm0s8784lhmz98blqnxh36i7d7rzkk17znx17d46666z7czrf"; type = "gem"; }; - version = "1.6.1"; + version = "1.6.2"; }; jmespath = { groups = ["default"]; @@ -604,12 +604,12 @@ platforms = []; source = { fetchSubmodules = false; - rev = "2654f6f02a0ce6150e623804b9fab9576fe008f6"; - sha256 = "1b2iqyv4aqfrknyci2fjhmf5v03f8jpwr2dva07b36kfrl0y09x2"; + rev = "70f696d7322148eba2fca49c5219dcb9a0133c6e"; + sha256 = "17q1fan1lam16rh1ilh46cwdxmnbrvqq9p43lxrxrgdbp634i9xr"; type = "git"; url = "https://github.com/rapid7/metasploit-framework"; }; - version = "6.2.31"; + version = "6.2.32"; }; metasploit-model = { groups = ["default"]; @@ -666,10 +666,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0rapl1sfmfi3bfr68da4ca16yhc0pp93vjwkj7y3rdqrzy3b41hy"; + sha256 = "1af4yarhbbx62f7qsmgg5fynrik0s36wjy3difkawy536xg343mp"; type = "gem"; }; - version = "2.8.0"; + version = "2.8.1"; }; minitest = { groups = ["default"]; @@ -927,20 +927,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1yabmxmqprb2x58awiasidsiwpplscmyar9dzwh5l8jgaw4i3wra"; + sha256 = "0dy2yw2xp8bv52697y78vzrb4wj0zfa95bc9mxyh0d7l7rn65fmw"; type = "gem"; }; - version = "6.0.0"; + version = "6.0.1"; }; racc = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0p685i23lr8pl7l09g9l2mcj615fr7g33w3mkcr472lcg34nq8n8"; + sha256 = "09jgz6r0f7v84a7jz9an85q8vvmp743dqcsdm3z9c8rqcqv6pljq"; type = "gem"; }; - version = "1.6.1"; + version = "1.6.2"; }; rack = { groups = ["default"]; diff --git a/pkgs/tools/security/saml2aws/default.nix b/pkgs/tools/security/saml2aws/default.nix index 9789fa3b09ae9..d4b6cacc64db3 100644 --- a/pkgs/tools/security/saml2aws/default.nix +++ b/pkgs/tools/security/saml2aws/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "saml2aws"; - version = "2.36.1"; + version = "2.36.2"; src = fetchFromGitHub { owner = "Versent"; repo = "saml2aws"; rev = "v${version}"; - sha256 = "sha256-3kBxMC+xXienHOu6YnJNCXd9Tc8rF5WUQF827GkauhQ="; + sha256 = "sha256-87s9lcI3URQOfl1zStSVOwmRonC740pZKAqZhDDdMaE="; }; vendorSha256 = "sha256-cxfanKv25U8U6FQ1YfOXghAR8GYQB9PN0TkfLzG4UbI="; diff --git a/pkgs/tools/security/sbsigntool/default.nix b/pkgs/tools/security/sbsigntool/default.nix index 34c5e4d235c81..8bbc52b10aff6 100644 --- a/pkgs/tools/security/sbsigntool/default.nix +++ b/pkgs/tools/security/sbsigntool/default.nix @@ -40,8 +40,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Tools for maintaining UEFI signature databases"; homepage = "http://jk.ozlabs.org/docs/sbkeysync-maintaing-uefi-key-databases"; - maintainers = with maintainers; [ hmenke ]; - platforms = [ "x86_64-linux" ]; # Broken on i686 + maintainers = with maintainers; [ hmenke raitobezarius ]; + platforms = [ "x86_64-linux" "aarch64-linux" ]; # Broken on i686 license = licenses.gpl3; }; } diff --git a/pkgs/tools/security/terrascan/default.nix b/pkgs/tools/security/terrascan/default.nix index 56f5d676a8b80..bc694986c8d11 100644 --- a/pkgs/tools/security/terrascan/default.nix +++ b/pkgs/tools/security/terrascan/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "terrascan"; - version = "1.17.0"; + version = "1.17.1"; src = fetchFromGitHub { owner = "accurics"; repo = pname; rev = "v${version}"; - sha256 = "sha256-I7tA6FRsG3miIXibmBAFvanIyI8jgThrInQEzUCxvAs="; + hash = "sha256-XcMDdnqx64UcEzD44z34sm5TmshPOTb5tivBnGXQLjo="; }; - vendorSha256 = "sha256-ahj67MoS+VXNlh5dRA722tq27JRQGaC7TejOVIAH8ms="; + vendorHash = "sha256-HjWUV5gfh2WnUAayZIj6LGFs0rMv2n7v6zJJrzBHBwg="; # Tests want to download a vulnerable Terraform project doCheck = false; @@ -27,6 +27,7 @@ buildGoModule rec { 500+ polices and support for Terraform and Kubernetes. ''; homepage = "https://github.com/accurics/terrascan"; + changelog = "https://github.com/tenable/terrascan/blob/v${version}/CHANGELOG.md"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/tools/security/tor/default.nix b/pkgs/tools/security/tor/default.nix index 67fdac238e667..3a50fdbc2b98f 100644 --- a/pkgs/tools/security/tor/default.nix +++ b/pkgs/tools/security/tor/default.nix @@ -30,11 +30,11 @@ let in stdenv.mkDerivation rec { pname = "tor"; - version = "0.4.7.11"; + version = "0.4.7.12"; src = fetchurl { url = "https://dist.torproject.org/${pname}-${version}.tar.gz"; - sha256 = "sha256-zzyvvu29vF/RwFQOdNbRCgBerf+SkJg5OBX4Z+MqE24="; + sha256 = "sha256-O12WlxLEZ4Ub0CjzFDQ+8VqX6kVxkek/+pcxCwW545U="; }; outputs = [ "out" "geoip" ]; diff --git a/pkgs/tools/security/vals/default.nix b/pkgs/tools/security/vals/default.nix new file mode 100644 index 0000000000000..d886908389c33 --- /dev/null +++ b/pkgs/tools/security/vals/default.nix @@ -0,0 +1,37 @@ +{ lib, buildGoModule, fetchFromGitHub, testers, vals }: + +buildGoModule rec { + pname = "vals"; + version = "0.19.0"; + + src = fetchFromGitHub { + rev = "v${version}"; + owner = "variantdev"; + repo = pname; + sha256 = "sha256-0TO8aN1qKpGQnec6hKph6EHkRWb1dfHtyRdFYX0BjM0="; + }; + + vendorSha256 = "sha256-wxM8g553DCkoL09Icz+HoXB98z1f6mm4qzk01k09++0="; + + ldflags = [ + "-s" + "-w" + "-X main.version=${version}" + ]; + + # Tests require connectivity to various backends. + doCheck = false; + + passthru.tests.version = testers.testVersion { + package = vals; + command = "vals version"; + }; + + meta = with lib; { + description = "Helm-like configuration values loader with support for various sources"; + license = licenses.asl20; + homepage = "https://github.com/variantdev/vals"; + changelog = "https://github.com/variantdev/vals/releases/v${version}"; + maintainers = with maintainers; [ stehessel ]; + }; +} diff --git a/pkgs/tools/system/automatic-timezoned/default.nix b/pkgs/tools/system/automatic-timezoned/default.nix index a131f651e4b53..3a985bee371dd 100644 --- a/pkgs/tools/system/automatic-timezoned/default.nix +++ b/pkgs/tools/system/automatic-timezoned/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "automatic-timezoned"; - version = "1.0.50"; + version = "1.0.53"; src = fetchFromGitHub { owner = "maxbrunet"; repo = pname; rev = "v${version}"; - sha256 = "sha256-GWM5PimmCSRRkKrcUuUUWS0gj5j5XZYvIXIhgdsnKbI="; + sha256 = "sha256-HxlaJwrek01yM8CDeaZ24lKBsA3VuanTcMNxnf4MwZc="; }; - cargoSha256 = "sha256-hDkkpBDgGHRYYGaDdN+9tMl6wsLEBtT3AXSbkAhAJDM="; + cargoSha256 = "sha256-jz58E7t8UfYezVozc95ncK96Sv3zHv4jSzgNQjsGc+k="; meta = with lib; { description = "Automatically update system timezone based on location"; diff --git a/pkgs/tools/system/gkraken/default.nix b/pkgs/tools/system/gkraken/default.nix index cd5e02d9a0481..b5bb7fd03c1b3 100644 --- a/pkgs/tools/system/gkraken/default.nix +++ b/pkgs/tools/system/gkraken/default.nix @@ -33,6 +33,7 @@ python3Packages.buildPythonApplication rec { nativeBuildInputs = [ meson pkg-config + gobject-introspection glib ninja gtk3 diff --git a/pkgs/tools/system/memtester/default.nix b/pkgs/tools/system/memtester/default.nix index dfbaaffd8e856..14b3610abe979 100644 --- a/pkgs/tools/system/memtester/default.nix +++ b/pkgs/tools/system/memtester/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "memtester"; - version = "4.5.1"; + version = "4.6.0"; preConfigure = '' echo "$CC" > conf-cc @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://pyropus.ca/software/memtester/old-versions/memtester-${version}.tar.gz"; - sha256 = "sha256-HF/COCV2wISzFM/TNNEnpmwgvWOJLKyfRFvB2LTKWkc="; + sha256 = "sha256-yf5Ot+gMjO9SAvkGXEwGgvVhZkfARV6RalcA+Y49uy4="; }; installFlags = [ "INSTALLPATH=$(out)" ]; diff --git a/pkgs/tools/system/netdata/default.nix b/pkgs/tools/system/netdata/default.nix index d27ebc4e2a64a..0952b8e6d50ab 100644 --- a/pkgs/tools/system/netdata/default.nix +++ b/pkgs/tools/system/netdata/default.nix @@ -19,14 +19,14 @@ with lib; let go-d-plugin = callPackage ./go.d.plugin.nix {}; in stdenv.mkDerivation rec { - version = "1.36.1"; + version = "1.37.1"; pname = "netdata"; src = fetchFromGitHub { owner = "netdata"; repo = "netdata"; rev = "v${version}"; - sha256 = "sha256-Msbzfcxq9hqerA9eXuMle+pAhDAAWWE/v0DKXgnhEnM="; + sha256 = "sha256-SsrdjFENPkI7Ed1gKt28sygJ5NgZ5un+5baIQ3Kv7yE="; fetchSubmodules = true; }; diff --git a/pkgs/tools/system/plan9port/default.nix b/pkgs/tools/system/plan9port/default.nix index b1f963e807f05..2aab36372715b 100644 --- a/pkgs/tools/system/plan9port/default.nix +++ b/pkgs/tools/system/plan9port/default.nix @@ -2,13 +2,9 @@ , fontconfig, freetype, libX11, libXext, libXt, xorgproto , perl # For building web manuals , which, ed -, darwin +, Carbon, Cocoa, IOKit, Metal, QuartzCore, DarwinTools # For building on Darwin }: -let - inherit (darwin.apple_sdk.frameworks) Carbon Cocoa IOKit Metal QuartzCore; - inherit (darwin) DarwinTools; -in stdenv.mkDerivation rec { pname = "plan9port"; version = "2022-09-12"; @@ -121,8 +117,6 @@ stdenv.mkDerivation rec { ]; mainProgram = "9"; platforms = platforms.unix; - # TODO: revisit this when the sdk situation on x86_64-darwin changes - broken = stdenv.isDarwin && stdenv.isx86_64; }; } # TODO: investigate the mouse chording support patch diff --git a/pkgs/tools/text/d2/default.nix b/pkgs/tools/text/d2/default.nix index 44d009a7552e8..d3a45b222685e 100644 --- a/pkgs/tools/text/d2/default.nix +++ b/pkgs/tools/text/d2/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "d2"; - version = "0.1.1"; + version = "0.1.2"; src = fetchFromGitHub { owner = "terrastruct"; repo = pname; rev = "v${version}"; - hash = "sha256-3cglQEJo2rkIJ+ogqliE/JK4SfoeKwB2bNrHRBgDJSU="; + hash = "sha256-O3T26Stau168hP7Hhv2bayamXQvaFD6feyW5AYoHf0U="; }; - vendorHash = "sha256-MyvLHWg7GFSzYMtzgba7Bi7QEijDvK3B+NC84ZU/Jvs="; + vendorHash = "sha256-k9zaZ28vs3R5usWUW5N78zz0PuP5UrYEhgXxpQ+v5sE="; ldflags = [ "-s" diff --git a/pkgs/tools/text/difftastic/default.nix b/pkgs/tools/text/difftastic/default.nix index eb54d8ee69504..9eaa93473251d 100644 --- a/pkgs/tools/text/difftastic/default.nix +++ b/pkgs/tools/text/difftastic/default.nix @@ -9,13 +9,13 @@ rustPlatform.buildRustPackage rec { pname = "difftastic"; - version = "0.38.0"; + version = "0.39.0"; src = fetchFromGitHub { owner = "wilfred"; repo = pname; rev = version; - sha256 = "sha256-NhuFyJvXk3N9G6LedAPwJIDdd0CfFs1rjYmC1tJTqB8="; + sha256 = "sha256-PyjgnO5LXV0UGNqpb2J39Ni077L5MjHc5ZkK/r8//II="; }; depsExtraArgs = { @@ -40,7 +40,7 @@ rustPlatform.buildRustPackage rec { popd ''; }; - cargoSha256 = "sha256-0XqLdjF9O8CRVyq7j7IvOqCUB0oCV2P703BcWwSlIx8="; + cargoSha256 = "sha256-jVs5KokgofAqhNLfr/RJ9qOHwBYMnkqc2EcAFezS9/0="; passthru.tests.version = testers.testVersion { package = difftastic; }; diff --git a/pkgs/tools/text/opencc/default.nix b/pkgs/tools/text/opencc/default.nix index 631835905a1f4..97f417b1b64e2 100644 --- a/pkgs/tools/text/opencc/default.nix +++ b/pkgs/tools/text/opencc/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "opencc"; - version = "1.1.4"; + version = "1.1.6"; src = fetchFromGitHub { owner = "BYVoid"; repo = "OpenCC"; rev = "ver.${version}"; - sha256 = "sha256-h/QKXPWHNgWf5Q9UIaNmP85YTUMN7RlRdlNI4NuBrO8="; + sha256 = "sha256-0aIYnUuG5XATruxwY6+LZbEdKkHP3X1N1ueVE7R37Qk="; }; nativeBuildInputs = [ cmake python3 ]; diff --git a/pkgs/tools/text/pomsky/default.nix b/pkgs/tools/text/pomsky/default.nix new file mode 100644 index 0000000000000..0bd2a2bff7e76 --- /dev/null +++ b/pkgs/tools/text/pomsky/default.nix @@ -0,0 +1,23 @@ +{ lib, rustPlatform, fetchFromGitHub }: + +rustPlatform.buildRustPackage rec { + pname = "pomsky"; + version = "0.8"; + + src = fetchFromGitHub { + owner = "rulex-rs"; + repo = pname; + rev = "v${version}"; + sha256 = "1bb28f80wxjpy23mp9zamkprl8xbnx99rmmn8nxcaapq360zv9yi"; + }; + + cargoSha256 = "sha256-Io8Ar7eNgULBIzI0rlitMI+9hLLWzI8pFwmH38hVVYU="; + + meta = with lib; { + description = "A portable, modern regular expression language"; + homepage = "https://pomsky-lang.org"; + changelog = "https://github.com/rulex-rs/pomsky/blob/v${version}/CHANGELOG.md"; + license = with licenses; [ mit /* or */ asl20 ]; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/tools/text/scraper/default.nix b/pkgs/tools/text/scraper/default.nix index 4118387a34a54..ba5c6507fa7ff 100644 --- a/pkgs/tools/text/scraper/default.nix +++ b/pkgs/tools/text/scraper/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "scraper"; - version = "0.13.0"; + version = "0.14.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-5fFO51I6DqH1BBELt9FW2BCwYcsXVXaQLgocMn446Bs="; + sha256 = "sha256-ucArD3xElLpOukNYHiErCTKDSlW2aDn00D3gr5L8Sm0="; }; - cargoSha256 = "sha256-Y4m7C7v4ekJfb3BoWwDF+X8uuRH9muaTwPECgu4WaMQ="; + cargoSha256 = "sha256-62rJWpDi2vPHFnJnIrisyj0sEZTzRra+zoMb06zmxdE="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/text/textpieces/default.nix b/pkgs/tools/text/textpieces/default.nix index db4edd417c208..7b20083a80bfb 100644 --- a/pkgs/tools/text/textpieces/default.nix +++ b/pkgs/tools/text/textpieces/default.nix @@ -24,13 +24,13 @@ let in stdenv.mkDerivation rec { pname = "textpieces"; - version = "3.3.0"; + version = "3.4.0"; src = fetchFromGitHub { owner = "liferooter"; repo = pname; rev = "v${version}"; - hash = "sha256-QLPvK2kiOGf8XN2aors6cZtl9d9uqsxcho2A1kISO5Y="; + hash = "sha256-LQq6pjue72a4kIHhWtoxJi/eKxPa4du5sBQY97SG1gY="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/text/vale/default.nix b/pkgs/tools/text/vale/default.nix index 74875d2af3eaf..3c450bb76484c 100644 --- a/pkgs/tools/text/vale/default.nix +++ b/pkgs/tools/text/vale/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "vale"; - version = "2.21.2"; + version = "2.21.3"; subPackages = [ "cmd/vale" ]; outputs = [ "out" "data" ]; @@ -11,7 +11,7 @@ buildGoModule rec { owner = "errata-ai"; repo = "vale"; rev = "v${version}"; - sha256 = "sha256-Bukk0bU2Dz1YQPwL/7WMy3LGLHgGIYqxSzEG7NcskzI="; + sha256 = "sha256-QklvwCiBnxh092c0ZDyesxKiQ45n1OctYovVAili/G0="; }; vendorSha256 = "sha256-7P77tR2wACRgF+8A/L/wPcq6etwzAX3pFO46FfGVTiE="; diff --git a/pkgs/tools/typesetting/tex/texlive/combine.nix b/pkgs/tools/typesetting/tex/texlive/combine.nix index c14d8c9f3054e..012f03d0e1203 100644 --- a/pkgs/tools/typesetting/tex/texlive/combine.nix +++ b/pkgs/tools/typesetting/tex/texlive/combine.nix @@ -50,34 +50,32 @@ in (buildEnv { "/tex/generic/config" # make it a real directory for scheme-infraonly ]; - nativeBuildInputs = [ makeWrapper libfaketime ]; + nativeBuildInputs = [ makeWrapper libfaketime perl bin.texlinks ]; buildInputs = pkgList.extraInputs; # This is set primarily to help find-tarballs.nix to do its job passthru.packages = pkgList.all; postBuild = '' - cd "$out" - mkdir -p ./bin + mkdir -p "$out"/bin '' + lib.concatMapStrings (path: '' for f in '${path}'/bin/*; do if [[ -L "$f" ]]; then - cp -d "$f" ./bin/ + cp -d "$f" "$out"/bin/ else - ln -s "$f" ./bin/ + ln -s "$f" "$out"/bin/ fi done '') pkgList.bin + '' - export PATH="$out/bin:$out/share/texmf/scripts/texlive:${perl}/bin:$PATH" + export PATH="$out/bin:$out/share/texmf/scripts/texlive:$PATH" export TEXMFCNF="$out/share/texmf/web2c" - export TEXMFDIST="$out/share/texmf" - export TEXMFSYSCONFIG="$out/share/texmf-config" - export TEXMFSYSVAR="$out/share/texmf-var" + TEXMFSYSCONFIG="$out/share/texmf-config" + TEXMFSYSVAR="$out/share/texmf-var" export PERL5LIB="$out/share/texmf/scripts/texlive:${bin.core.out}/share/texmf-dist/scripts/texlive" '' + # patch texmf-dist -> $out/share/texmf @@ -85,41 +83,28 @@ in (buildEnv { # TODO: perhaps do lua actions? # tried inspiration from install-tl, sub do_texmf_cnf '' - patchCnfLua() { - local cnfLua="$1" - - if [ -e "$cnfLua" ]; then - local cnfLuaOrig="$(realpath "$cnfLua")" - rm ./texmfcnf.lua - sed \ - -e 's,texmf-dist,texmf,g' \ - -e "s,\(TEXMFLOCAL[ ]*=[ ]*\)[^\,]*,\1\"$out/share/texmf-local\",g" \ - -e "s,\$SELFAUTOLOC,$out,g" \ - -e "s,selfautodir:/,$out/share/,g" \ - -e "s,selfautodir:,$out/share/,g" \ - -e "s,selfautoparent:/,$out/share/,g" \ - -e "s,selfautoparent:,$out/share/,g" \ - "$cnfLuaOrig" > "$cnfLua" - fi - } - - ( - cd ./share/texmf/web2c/ - local cnfOrig="$(realpath ./texmf.cnf)" - rm ./texmf.cnf + if [ -e "$TEXMFCNF/texmfcnf.lua" ]; then sed \ -e 's,texmf-dist,texmf,g' \ + -e "s,\(TEXMFLOCAL[ ]*=[ ]*\)[^\,]*,\1\"$out/share/texmf-local\",g" \ -e "s,\$SELFAUTOLOC,$out,g" \ - -e "s,\$SELFAUTODIR,$out/share,g" \ - -e "s,\$SELFAUTOPARENT,$out/share,g" \ - -e "s,\$SELFAUTOGRANDPARENT,$out/share,g" \ - -e "/^mpost,/d" `# CVE-2016-10243` \ - "$cnfOrig" > ./texmf.cnf + -e "s,selfautodir:/,$out/share/,g" \ + -e "s,selfautodir:,$out/share/,g" \ + -e "s,selfautoparent:/,$out/share/,g" \ + -e "s,selfautoparent:,$out/share/,g" \ + -i "$TEXMFCNF/texmfcnf.lua" + fi - patchCnfLua "./texmfcnf.lua" + sed \ + -e 's,texmf-dist,texmf,g' \ + -e "s,\$SELFAUTOLOC,$out,g" \ + -e "s,\$SELFAUTODIR,$out/share,g" \ + -e "s,\$SELFAUTOPARENT,$out/share,g" \ + -e "s,\$SELFAUTOGRANDPARENT,$out/share,g" \ + -e "/^mpost,/d" `# CVE-2016-10243` \ + -i "$TEXMFCNF/texmf.cnf" - mkdir $out/share/texmf-local - ) + mkdir "$out/share/texmf-local" '' + # now filter hyphenation patterns and formats (let @@ -154,23 +139,17 @@ in (buildEnv { + lib.concatMapStrings (pname: section "^# from ${pname}:$" "^# from") formatPNames ); in '' - ( - cd ./share/texmf/tex/generic/config/ - for fname in language.{dat,def}; do - [[ -e "$fname" ]] && sed -E -n -f '${script}' -i "$fname" - done - [[ -e language.dat.lua ]] && sed -E -n -f '${scriptLua}' -i language.dat.lua - ) - ( - cd ./share/texmf/web2c/ - [[ -e fmtutil.cnf ]] && sed -E -n -f '${fmtutilSed}' -i fmtutil.cnf - ) + for fname in "$out"/share/texmf/tex/generic/config/language.{dat,def}; do + [[ -e "$fname" ]] && sed -E -n -f '${script}' -i "$fname" + done + [[ -e "$out"/share/texmf/tex/generic/config/language.dat.lua ]] && sed -E -n -f '${scriptLua}' -i "$out"/share/texmf/tex/generic/config/language.dat.lua + [[ -e "$TEXMFCNF"/fmtutil.cnf ]] && sed -E -n -f '${fmtutilSed}' -i "$TEXMFCNF"/fmtutil.cnf '') + # function to wrap created executables with required env vars '' wrapBin() { - for link in ./bin/*; do + for link in "$out"/bin/*; do [ -L "$link" -a -x "$link" ] || continue # if not link, assume OK local target=$(readlink "$link") @@ -212,9 +191,7 @@ in (buildEnv { '' + # texlive post-install actions '' - for tool in updmap; do - ln -sf "$out/share/texmf/scripts/texlive/$tool."* "$out/bin/$tool" - done + ln -sf "$out"/share/texmf/scripts/texlive/updmap.pl "$out"/bin/updmap '' + # now hack to preserve "$0" for mktexfmt '' @@ -223,56 +200,49 @@ in (buildEnv { sed "1s|$| -I $out/share/texmf/scripts/texlive|" -i "$out/bin/fmtutil" ln -sf fmtutil "$out/bin/mktexfmt" - perl `type -P mktexlsr.pl` --sort ./share/texmf - ${bin.texlinks}/bin/texlinks "$out/bin" && wrapBin - FORCE_SOURCE_DATE=1 perl `type -P fmtutil.pl` --sys --all | grep '^fmtutil' # too verbose - #${bin.texlinks}/bin/texlinks "$out/bin" && wrapBin # do we need to regenerate format links? + perl "$out"/share/texmf/scripts/texlive/mktexlsr.pl --sort "$out"/share/texmf + texlinks "$out/bin" && wrapBin + FORCE_SOURCE_DATE=1 fmtutil --sys --all | grep '^fmtutil' # too verbose + #texlinks "$out/bin" && wrapBin # do we need to regenerate format links? # tex intentionally ignores SOURCE_DATE_EPOCH even when FORCE_SOURCE_DATE=1 # https://salsa.debian.org/live-team/live-build/-/blob/master/examples/hooks/reproducible/0139-reproducible-texlive-binaries-fmt-files.hook.chroot#L52 - if [[ -d share/texmf-var/web2c/tex ]] + if [[ -f "$TEXMFSYSVAR"/web2c/tex/tex.fmt ]] then - cd share/texmf-var/web2c/tex - faketime $(date --utc -d@$SOURCE_DATE_EPOCH --iso-8601=seconds) tex -ini -jobname=tex -progname=tex tex.ini - cd - + faketime $(date --utc -d@$SOURCE_DATE_EPOCH --iso-8601=seconds) tex -output-directory "$TEXMFSYSVAR"/web2c/tex -ini -jobname=tex -progname=tex tex.ini fi - if [[ -f share/texmf-var/web2c/luahbtex/lualatex.fmt ]] + if [[ -f "$TEXMFSYSVAR"/web2c/luahbtex/lualatex.fmt ]] then - cd share/texmf-var/web2c/luahbtex - faketime $(date --utc -d@$SOURCE_DATE_EPOCH --iso-8601=seconds) luahbtex -ini -jobname=lualatex -progname=lualatex lualatex.ini - cd - + faketime $(date --utc -d@$SOURCE_DATE_EPOCH --iso-8601=seconds) luahbtex --output-directory="$TEXMFSYSVAR"/web2c/luahbtex -ini -jobname=lualatex -progname=lualatex lualatex.ini fi # Disable unavailable map files - echo y | perl `type -P updmap.pl` --sys --syncwithtrees --force + echo y | updmap --sys --syncwithtrees --force # Regenerate the map files (this is optional) - perl `type -P updmap.pl` --sys --force + updmap --sys --force # sort entries to improve reproducibility [[ -f "$TEXMFSYSCONFIG"/web2c/updmap.cfg ]] && sort -o "$TEXMFSYSCONFIG"/web2c/updmap.cfg "$TEXMFSYSCONFIG"/web2c/updmap.cfg - perl `type -P mktexlsr.pl` --sort ./share/texmf-* # to make sure + perl "$out"/share/texmf/scripts/texlive/mktexlsr.pl --sort "$out"/share/texmf-* # to make sure '' + # install (wrappers for) scripts, based on a list from upstream texlive '' - ( - cd "$out/share/texmf/scripts" - source '${bin.core.out}/share/texmf-dist/scripts/texlive/scripts.lst' - for s in $texmf_scripts; do - [[ -x "./$s" ]] || continue - tName="$(basename $s | sed 's/\.[a-z]\+$//')" # remove extension - [[ ! -e "$out/bin/$tName" ]] || continue - ln -sv "$(realpath $s)" "$out/bin/$tName" # wrapped below - done - ) + source '${bin.core.out}/share/texmf-dist/scripts/texlive/scripts.lst' + for s in $texmf_scripts; do + [[ -x "$out/share/texmf/scripts/$s" ]] || continue + tName="$(basename $s | sed 's/\.[a-z]\+$//')" # remove extension + [[ ! -e "$out/bin/$tName" ]] || continue + ln -sv "$(realpath $out/share/texmf/scripts/$s)" "$out/bin/$tName" # wrapped below + done '' + # A hacky way to provide repstopdf # * Copy is done to have a correct "$0" so that epstopdf enables the restricted mode # * ./bin/repstopdf needs to be a symlink to be processed by wrapBin '' - if [[ -e ./bin/epstopdf ]]; then - cp $(realpath ./bin/epstopdf) ./share/texmf/scripts/repstopdf - ln -s "$out"/share/texmf/scripts/repstopdf ./bin/repstopdf + if [[ -e "$out"/bin/epstopdf ]]; then + cp "$out"/bin/epstopdf "$out"/share/texmf/scripts/repstopdf + ln -s "$out"/share/texmf/scripts/repstopdf "$out"/bin/repstopdf fi '' + # finish up the wrappers @@ -283,7 +253,7 @@ in (buildEnv { # Perform a small test to verify that the restricted mode get enabled when # needed (detected by checking if it disallows --gscmd) '' - if [[ -e ./bin/epstopdf ]]; then + if [[ -e "$out"/bin/epstopdf ]]; then echo "Testing restricted mode for {,r}epstopdf" ! (epstopdf --gscmd echo /dev/null 2>&1 || true) | grep forbidden (repstopdf --gscmd echo /dev/null 2>&1 || true) | grep forbidden @@ -297,24 +267,16 @@ in (buildEnv { # note: it's possible we might need deepen the work-around to man/*. '' for d in {man,info}; do - [[ -e "./share/texmf/doc/$d" ]] || continue; - ( - mkdir -p "./share/$d" && cd "./share/$d" - ln -s -t . ../texmf/doc/"$d"/* - ) + [[ -e "$out/share/texmf/doc/$d" ]] || continue; + mkdir -p "$out/share/$d" + ln -s -t "$out/share/$d" "$out/share/texmf/doc/$d"/* done '' + # MkIV uses its own lookup mechanism and we need to initialize - # caches for it. Unsetting TEXMFCNF is needed to let mtxrun - # determine it from kpathsea so that the config path is given with - # "selfautodir:" as it will be in runtime. This is important because - # the cache is identified by a hash of this path. + # caches for it. '' if [[ -e "$out/bin/mtxrun" ]]; then - ( - unset TEXMFCNF - mtxrun --generate - ) + mtxrun --generate fi '' + bin.cleanBrokenLinks + diff --git a/pkgs/tools/virtualization/xe-guest-utilities/default.nix b/pkgs/tools/virtualization/xe-guest-utilities/default.nix index ce4264bdf838b..e78b36c9f84f9 100644 --- a/pkgs/tools/virtualization/xe-guest-utilities/default.nix +++ b/pkgs/tools/virtualization/xe-guest-utilities/default.nix @@ -1,82 +1,49 @@ -{ lib, stdenv, fetchurl, bzip2, lzo, zlib, xz, bash, python2, gnutar, gnused, gnugrep, which }: +{ lib +, buildGoModule +, fetchFromGitHub +, runtimeShell +}: -stdenv.mkDerivation (rec { +buildGoModule rec { pname = "xe-guest-utilities"; - version = "6.2.0"; - meta = { - description = "Citrix XenServer Tools"; - homepage = "http://citrix.com/English/ps2/products/product.asp?contentID=683148&ntref=hp_nav_US"; - maintainers = with lib.maintainers; [ benwbooth ]; - platforms = lib.platforms.linux; - license = [ lib.licenses.gpl2 lib.licenses.lgpl21 ]; - # never built on aarch64-linux since first introduction in nixpkgs - broken = stdenv.isLinux && stdenv.isAarch64; - }; - src = fetchurl { - url = "https://sources.archlinux.org/other/community/xe-guest-utilities/xe-guest-utilities_${version}-1120.tar.gz"; - sha256 = "f9593cd9588188f80253e736f48d8dd94c5b517abb18316085f86acffab48794"; + version = "7.30.0"; + + src = fetchFromGitHub { + owner = "xenserver"; + repo = "xe-guest-utilities"; + rev = "v${version}"; + hash = "sha256-gMb8QIUg8t0SiTtUzqeh4XM5hHgCXuf5KlV3OeoU0LI="; }; - buildInputs = [ bzip2 gnutar gnused python2 lzo zlib xz gnugrep which ]; - patches = [ ./ip-address.patch ]; + + vendorHash = "sha256-zhpDvo8iujE426/gxJY+Pqfv99vLNKHqyMQbbXIKodY="; + postPatch = '' - tar xf "$NIX_BUILD_TOP/$name/xenstore-sources.tar.bz2" + substituteInPlace mk/xen-vcpu-hotplug.rules \ + --replace "/bin/sh" "${runtimeShell}" ''; - # Workaround build failure on -fno-common toolchains: - # ld: utils.o:xenstore/utils.h:27: - # multiple definition of `xprintf'; xenstored_core.o:xenstore/utils.h:27: first defined here - NIX_CFLAGS_COMPILE = "-fcommon"; - buildPhase = '' - export CC=gcc - export CFLAGS='-Wall -Wstrict-prototypes -Wno-unused-local-typedefs -Wno-sizeof-pointer-memaccess' - export PYTHON=python2 - cd "$NIX_BUILD_TOP/$name/uclibc-sources" - for file in Config.mk tools/libxc/Makefile tools/misc/Makefile tools/misc/lomount/Makefile tools/xenstore/Makefile; do - substituteInPlace "$file" --replace -Werror "" - done - make -C tools/include - make -C tools/libxc - make -C tools/xenstore + runHook preBuild + + make RELEASE=nixpkgs + + runHook postBuild ''; installPhase = '' - export CFLAGS+='-Wall -Wstrict-prototypes -Wno-unused-local-typedefs -Wno-sizeof-pointer-memaccess' - if [[ $CARCH == x86_64 ]]; then - export LIBLEAFDIR_x86_64=lib - fi - for f in include libxc xenstore; do - [[ ! -d $NIX_BUILD_TOP/$name/uclibc-sources/tools/$f ]] && continue - make -C "$NIX_BUILD_TOP/$name/uclibc-sources/tools/$f" DESTDIR="$out" BINDIR=/bin SBINDIR=/bin INCLUDEDIR=/include LIBDIR=/lib install - done - rm -r "$out"/var + runHook preInstall - cd "$NIX_BUILD_TOP/$name" - install -Dm755 xe-update-guest-attrs "$out/bin/xe-update-guest-attrs" - install -Dm755 xe-daemon "$out/bin/xe-daemon" - install -Dm644 xen-vcpu-hotplug.rules "$out/lib/udev/rules.d/10-xen-vcpu-hotplug.rules" - substituteInPlace "$out/bin/xe-daemon" --replace sbin bin - substituteInPlace "$out/bin/xe-daemon" --replace /usr/ "$out/" - substituteInPlace "$out/bin/xe-update-guest-attrs" --replace /usr/ "$out/" - substituteInPlace "$out/bin/xe-update-guest-attrs" --replace 'export PATH=' 'export PATH=$PATH:' - substituteInPlace "$out/lib/udev/rules.d/10-xen-vcpu-hotplug.rules" --replace /bin/sh '${bash}/bin/sh' + install -Dt "$out"/bin build/stage/usr/{,s}bin/* + install -Dt "$out"/etc/udev/rules.d build/stage/etc/udev/rules.d/* - cat <<'EOS' >"$out/bin/xe-linux-distribution" - #!${bash}/bin/bash -eu - . /etc/os-release - if [[ $# -gt 0 ]]; then - mkdir -p "$(dirname "$1")" - exec 1>"$1" - fi - cat <<EOF - os_distro="$ID" - os_majorver="''${VERSION_ID%%.*}" - os_minorver="''${VERSION_ID#*.}" - os_uname="$(uname -r)" - os_name="$PRETTY_NAME" - EOF - EOS - chmod 0755 "$out/bin/xe-linux-distribution" + runHook postInstall ''; -}) + meta = { + description = "XenServer guest utilities"; + homepage = "https://github.com/xenserver/xe-guest-utilities"; + license = lib.licenses.bsd2; + maintainers = with lib.maintainers; [ ]; + platforms = lib.platforms.linux; + }; +} diff --git a/pkgs/tools/virtualization/xe-guest-utilities/ip-address.patch b/pkgs/tools/virtualization/xe-guest-utilities/ip-address.patch deleted file mode 100644 index 185f259ef7086..0000000000000 --- a/pkgs/tools/virtualization/xe-guest-utilities/ip-address.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff -uNr a/xe-update-guest-attrs b/xe-update-guest-attrs ---- a/xe-update-guest-attrs 2012-09-25 12:45:14.000000000 +0200 -+++ b/xe-update-guest-attrs 2012-11-21 16:46:35.000000000 +0100 -@@ -177,9 +177,9 @@ - # collisions:0 txqueuelen:0 - # RX bytes:3604609 (3.4 MiB) TX bytes:3604609 (3.4 MiB) - --ifs=`/sbin/ifconfig | sed -n -e 's/^\([a-z0-9]\+\).*/name \1/p' \ -- -e 's/.*inet addr:\('$IPADDR_RE'\) .*/ipv4 \1/p' \ -- -e 's+.*inet6 addr: \('$IPADDR6_RE'\)/.*+ipv6 \1+p' | \ -+ifs=`ip addr show | sed -n -e 's/^[[:digit:]]*: \([a-z0-9]*\): .*/name \1 /gp;' \ -+ -e 's/^[[:space:]]\{4\}inet \('${IPADDR_RE}'\)\/.*/ipv4 \1 /gp;' \ -+ -e 's/^[[:space:]]\{4\}inet6 \('${IPADDR6_RE}'\)\/.*/ipv6 \1 /gp;' | \ - while read tag value; do - case "${tag}" in - name) \ No newline at end of file diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index d459d90fd2bca..63e2305462675 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -951,7 +951,7 @@ mapAliases ({ moby = throw "moby has been removed, merged into linuxkit in 2018. Use linuxkit instead"; module_init_tools = throw "'module_init_tools' has been renamed to/replaced by 'kmod'"; # Converted to throw 2022-02-22 monero = monero-cli; # Added 2021-11-28 - monodevelop = throw "monodevelop has been removed from nixpgks"; # Added 2022-01-15 + monodevelop = throw "monodevelop has been removed from nixpkgs"; # Added 2022-01-15 mopidy-gmusic = throw "mopidy-gmusic has been removed because Google Play Music was discontinued"; # Added 2021-03-07 mopidy-local-images = throw "mopidy-local-images has been removed as it's unmaintained. Its functionality has been merged into the mopidy-local extension"; # Added 2020-10-18 mopidy-local-sqlite = throw "mopidy-local-sqlite has been removed as it's unmaintained. Its functionality has been merged into the mopidy-local extension"; # Added 2020-10-18 @@ -1012,6 +1012,7 @@ mapAliases ({ networkmanager_openvpn = throw "'networkmanager_openvpn' has been renamed to/replaced by 'networkmanager-openvpn'"; # Converted to throw 2022-02-22 networkmanager_vpnc = throw "'networkmanager_vpnc' has been renamed to/replaced by 'networkmanager-vpnc'"; # Converted to throw 2022-02-22 neutral-style = throw "neural-style has been removed, as the upstream project has been abandoned"; # Added 2020-03-28 + neuron-notes = throw "'neuron-notes' has been decontinued, migrate to 'emanote' instead."; # Added 2022-12-18 nfsUtils = throw "'nfsUtils' has been renamed to/replaced by 'nfs-utils'"; # Converted to throw 2022-02-22 nginxUnstable = throw "'nginxUnstable' has been renamed to/replaced by 'nginxMainline'"; # Converted to throw 2022-02-22 nilfs_utils = throw "'nilfs_utils' has been renamed to/replaced by 'nilfs-utils'"; # Converted to throw 2022-02-22 @@ -1100,6 +1101,7 @@ mapAliases ({ pentablet-driver = xp-pen-g430-driver; # Added 2022-06-23 percona-server = percona-server56; # Added 2022-11-01 percona-server56 = throw "'percona-server56' has been dropped due to lack of maintenance, no upstream support and security issues"; # Added 2022-11-01 + percona-xtrabackup_2_4 = throw "'percona-xtrabackup_2_4' has been renamed to/replaced by 'percona-xtrabackup'"; # Added 2022-12-23 perlXMLParser = throw "'perlXMLParser' has been renamed to/replaced by 'perlPackages.XMLParser'"; # Converted to throw 2022-02-22 perlArchiveCpio = throw "'perlArchiveCpio' has been renamed to/replaced by 'perlPackages.ArchiveCpio'"; # Converted to throw 2022-02-22 pgadmin = pgadmin4; diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index bff0e2f7591c6..f75fb132dfbec 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -416,10 +416,6 @@ with pkgs; comedilib = callPackage ../development/libraries/comedilib { }; - commitlint = nodePackages."@commitlint/cli"; - - commit-formatter = callPackage ../applications/version-management/commit-formatter { }; - commix = callPackage ../tools/security/commix { }; conserver = callPackage ../tools/misc/conserver { }; @@ -448,8 +444,6 @@ with pkgs; databricks-sql-cli = python3Packages.callPackage ../applications/misc/databricks-sql-cli { }; - datalad = callPackage ../applications/version-management/datalad { }; - dhallDirectoryToNix = callPackage ../build-support/dhall/directory-to-nix.nix { }; dhallPackageToNix = callPackage ../build-support/dhall/package-to-nix.nix { }; @@ -464,6 +458,8 @@ with pkgs; dsq = callPackage ../tools/misc/dsq { }; + dtv-scan-tables = callPackage ../data/misc/dtv-scan-tables { }; + dufs = callPackage ../servers/http/dufs { inherit (darwin.apple_sdk.frameworks) Security; }; @@ -977,7 +973,8 @@ with pkgs; makeShellWrapper = makeSetupHook { deps = [ dieHook ]; substitutions = { - shell = targetPackages.runtimeShell; + # targetPackages.runtimeShell only exists when pkgs == targetPackages (when targetPackages is not __raw) + shell = if targetPackages ? runtimeShell then targetPackages.runtimeShell else throw "makeWrapper/makeShellWrapper must be in nativeBuildInputs"; }; passthru = { tests = tests.makeWrapper; @@ -1085,6 +1082,8 @@ with pkgs; { deps = [ lcov enableGCOVInstrumentation ]; } ../build-support/setup-hooks/make-coverage-analysis-report.sh; + makeHardcodeGsettingsPatch = callPackage ../build-support/make-hardcode-gsettings-patch { }; + # intended to be used like nix-build -E 'with import <nixpkgs> {}; enableDebugging fooPackage' enableDebugging = pkg: pkg.override { stdenv = stdenvAdapters.keepDebugInfo pkg.stdenv; }; @@ -1536,9 +1535,9 @@ with pkgs; zq = callPackage ../development/tools/zq { }; - ### APPLICATIONS/VERSION-MANAGEMENT/GIT-AND-TOOLS + ### APPLICATIONS/VERSION-MANAGEMENT - git = callPackage ../applications/version-management/git-and-tools/git { + git = callPackage ../applications/version-management/git { inherit (darwin.apple_sdk.frameworks) CoreServices Security; perlLibs = [perlPackages.LWP perlPackages.URI perlPackages.TermReadKey]; smtpPerlLibs = [ @@ -1575,62 +1574,68 @@ with pkgs; withpcre2 = false; }; - bfg-repo-cleaner = callPackage ../applications/version-management/git-and-tools/bfg-repo-cleaner { }; + bfg-repo-cleaner = callPackage ../applications/version-management/bfg-repo-cleaner { }; + + bit = callPackage ../applications/version-management/bit { }; + + bitbucket-server-cli = callPackage ../applications/version-management/bitbucket-server-cli { }; - bit = callPackage ../applications/version-management/git-and-tools/bit { }; + bump2version = python3Packages.callPackage ../applications/version-management/bump2version { }; - bitbucket-server-cli = callPackage ../applications/version-management/git-and-tools/bitbucket-server-cli { }; + cgit = callPackage ../applications/version-management/cgit { }; - bump2version = python3Packages.callPackage ../applications/version-management/git-and-tools/bump2version { }; + cgit-pink = callPackage ../applications/version-management/cgit/pink.nix { }; - cgit = callPackage ../applications/version-management/git-and-tools/cgit { }; + commit-formatter = callPackage ../applications/version-management/commit-formatter { }; - cgit-pink = callPackage ../applications/version-management/git-and-tools/cgit/pink.nix { }; + commitlint = nodePackages."@commitlint/cli"; - conform = callPackage ../applications/version-management/git-and-tools/conform { }; + conform = callPackage ../applications/version-management/conform { }; - darcs-to-git = callPackage ../applications/version-management/git-and-tools/darcs-to-git { }; + datalad = callPackage ../applications/version-management/datalad { }; - delta = callPackage ../applications/version-management/git-and-tools/delta { + darcs-to-git = callPackage ../applications/version-management/darcs-to-git { }; + + delta = callPackage ../applications/version-management/delta { inherit (darwin.apple_sdk.frameworks) DiskArbitration Foundation Security; }; - diff-so-fancy = callPackage ../applications/version-management/git-and-tools/diff-so-fancy { }; + diff-so-fancy = callPackage ../applications/version-management/diff-so-fancy { }; - gex = callPackage ../applications/version-management/git-and-tools/gex { }; + gex = callPackage ../applications/version-management/gex { }; - gfold = callPackage ../applications/version-management/git-and-tools/gfold { + gfold = callPackage ../applications/version-management/gfold { inherit (darwin.apple_sdk.frameworks) Security; }; - gita = python3Packages.callPackage ../applications/version-management/git-and-tools/gita { }; + gita = python3Packages.callPackage ../applications/version-management/gita { }; - gitoxide = callPackage ../applications/version-management/git-and-tools/gitoxide { + gitoxide = callPackage ../applications/version-management/gitoxide { inherit (darwin.apple_sdk.frameworks) Security SystemConfiguration; }; - gg-scm = callPackage ../applications/version-management/git-and-tools/gg { }; + gg-scm = callPackage ../applications/version-management/gg { }; github-cli = gh; - gh = callPackage ../applications/version-management/git-and-tools/gh { }; + gh = callPackage ../applications/version-management/gh { }; - ghorg = callPackage ../applications/version-management/git-and-tools/ghorg { }; + ghorg = callPackage ../applications/version-management/ghorg { }; - ghq = callPackage ../applications/version-management/git-and-tools/ghq { }; + ghq = callPackage ../applications/version-management/ghq { }; - ghr = callPackage ../applications/version-management/git-and-tools/ghr { }; + ghr = callPackage ../applications/version-management/ghr { }; - git-absorb = callPackage ../applications/version-management/git-and-tools/git-absorb { + git-absorb = callPackage ../applications/version-management/git-absorb { inherit (darwin.apple_sdk.frameworks) Security; }; - git-aggregator = callPackage ../applications/version-management/git-and-tools/git-aggregator { }; + git-aggregator = callPackage ../applications/version-management/git-aggregator { }; - git-annex-metadata-gui = libsForQt5.callPackage ../applications/version-management/git-and-tools/git-annex-metadata-gui { + git-annex-metadata-gui = libsForQt5.callPackage ../applications/version-management/git-annex-metadata-gui { inherit (python3Packages) buildPythonApplication pyqt5 git-annex-adapter; }; - git-annex-remote-dbx = callPackage ../applications/version-management/git-and-tools/git-annex-remote-dbx { + git-annex-remote-dbx = callPackage ../applications/version-management/git-annex-remote-dbx { inherit (python3Packages) buildPythonApplication fetchPypi @@ -1639,7 +1644,7 @@ with pkgs; humanfriendly; }; - git-annex-remote-googledrive = callPackage ../applications/version-management/git-and-tools/git-annex-remote-googledrive { + git-annex-remote-googledrive = callPackage ../applications/version-management/git-annex-remote-googledrive { inherit (python3Packages) buildPythonApplication fetchPypi @@ -1650,262 +1655,264 @@ with pkgs; humanfriendly; }; - git-annex-remote-rclone = callPackage ../applications/version-management/git-and-tools/git-annex-remote-rclone { }; + git-annex-remote-rclone = callPackage ../applications/version-management/git-annex-remote-rclone { }; - git-annex-utils = callPackage ../applications/version-management/git-and-tools/git-annex-utils { }; + git-annex-utils = callPackage ../applications/version-management/git-annex-utils { }; - git-appraise = callPackage ../applications/version-management/git-and-tools/git-appraise { }; + git-appraise = callPackage ../applications/version-management/git-appraise { }; - git-backup = callPackage ../applications/version-management/git-and-tools/git-backup { + git-backup = callPackage ../applications/version-management/git-backup { openssl = openssl_1_1; inherit (darwin.apple_sdk.frameworks) Security; }; - git-big-picture = callPackage ../applications/version-management/git-and-tools/git-big-picture { }; + git-big-picture = callPackage ../applications/version-management/git-big-picture { }; - git-branchless = callPackage ../applications/version-management/git-and-tools/git-branchless { + git-branchless = callPackage ../applications/version-management/git-branchless { inherit (darwin.apple_sdk.frameworks) Security SystemConfiguration; }; - git-bug = callPackage ../applications/version-management/git-and-tools/git-bug { }; + git-branchstack = python3.pkgs.callPackage ../applications/version-management/git-branchstack { }; + + git-bug = callPackage ../applications/version-management/git-bug { }; - git-chglog = callPackage ../applications/version-management/git-and-tools/git-chglog { }; + git-chglog = callPackage ../applications/version-management/git-chglog { }; - git-cinnabar = callPackage ../applications/version-management/git-and-tools/git-cinnabar { + git-cinnabar = callPackage ../applications/version-management/git-cinnabar { inherit (darwin.apple_sdk.frameworks) CoreServices; }; - git-cliff = callPackage ../applications/version-management/git-and-tools/git-cliff { + git-cliff = callPackage ../applications/version-management/git-cliff { inherit (darwin.apple_sdk.frameworks) Security; }; - git-codeowners = callPackage ../applications/version-management/git-and-tools/git-codeowners { }; + git-codeowners = callPackage ../applications/version-management/git-codeowners { }; - git-codereview = callPackage ../applications/version-management/git-and-tools/git-codereview { }; + git-codereview = callPackage ../applications/version-management/git-codereview { }; - git-cola = callPackage ../applications/version-management/git-and-tools/git-cola { }; + git-cola = callPackage ../applications/version-management/git-cola { }; - git-crecord = callPackage ../applications/version-management/git-and-tools/git-crecord { }; + git-crecord = callPackage ../applications/version-management/git-crecord { }; - git-credential-1password = callPackage ../applications/version-management/git-and-tools/git-credential-1password { }; + git-credential-1password = callPackage ../applications/version-management/git-credential-1password { }; - git-credential-keepassxc = callPackage ../applications/version-management/git-and-tools/git-credential-keepassxc { + git-credential-keepassxc = callPackage ../applications/version-management/git-credential-keepassxc { inherit (darwin.apple_sdk.frameworks) DiskArbitration Foundation; }; - git-crypt = callPackage ../applications/version-management/git-and-tools/git-crypt { }; + git-crypt = callPackage ../applications/version-management/git-crypt { }; - git-delete-merged-branches = callPackage ../applications/version-management/git-and-tools/git-delete-merged-branches { }; + git-delete-merged-branches = callPackage ../applications/version-management/git-delete-merged-branches { }; - git-extras = callPackage ../applications/version-management/git-and-tools/git-extras { }; + git-extras = callPackage ../applications/version-management/git-extras { }; - git-fame = callPackage ../applications/version-management/git-and-tools/git-fame { }; + git-fame = callPackage ../applications/version-management/git-fame { }; - git-fast-export = callPackage ../applications/version-management/git-and-tools/fast-export { }; + git-fast-export = callPackage ../applications/version-management/fast-export { }; - git-fire = callPackage ../applications/version-management/git-and-tools/git-fire { }; + git-fire = callPackage ../applications/version-management/git-fire { }; - git-ftp = callPackage ../applications/version-management/git-and-tools/git-ftp { }; + git-ftp = callPackage ../applications/version-management/git-ftp { }; - git-gone = callPackage ../applications/version-management/git-and-tools/git-gone { + git-gone = callPackage ../applications/version-management/git-gone { inherit (darwin.apple_sdk.frameworks) Security; }; - git-hound = callPackage ../applications/version-management/git-and-tools/git-hound { }; + git-hound = callPackage ../applications/version-management/git-hound { }; - git-hub = callPackage ../applications/version-management/git-and-tools/git-hub { }; + git-hub = callPackage ../applications/version-management/git-hub { }; - git-ignore = callPackage ../applications/version-management/git-and-tools/git-ignore { }; + git-ignore = callPackage ../applications/version-management/git-ignore { }; - git-imerge = python3Packages.callPackage ../applications/version-management/git-and-tools/git-imerge { }; + git-imerge = python3Packages.callPackage ../applications/version-management/git-imerge { }; - git-interactive-rebase-tool = callPackage ../applications/version-management/git-and-tools/git-interactive-rebase-tool { + git-interactive-rebase-tool = callPackage ../applications/version-management/git-interactive-rebase-tool { inherit (darwin.apple_sdk.frameworks) Security; }; - git-lfs = lowPrio (callPackage ../applications/version-management/git-and-tools/git-lfs { }); + git-lfs = lowPrio (callPackage ../applications/version-management/git-lfs { }); - git-my = callPackage ../applications/version-management/git-and-tools/git-my { }; + git-my = callPackage ../applications/version-management/git-my { }; - git-machete = python3Packages.callPackage ../applications/version-management/git-and-tools/git-machete { }; + git-machete = python3Packages.callPackage ../applications/version-management/git-machete { }; - git-nomad = callPackage ../applications/version-management/git-and-tools/git-nomad { + git-nomad = callPackage ../applications/version-management/git-nomad { inherit (darwin.apple_sdk.frameworks) SystemConfiguration; }; - git-octopus = callPackage ../applications/version-management/git-and-tools/git-octopus { }; + git-octopus = callPackage ../applications/version-management/git-octopus { }; - git-open = callPackage ../applications/version-management/git-and-tools/git-open { }; + git-open = callPackage ../applications/version-management/git-open { }; - git-privacy = callPackage ../applications/version-management/git-and-tools/git-privacy { }; + git-privacy = callPackage ../applications/version-management/git-privacy { }; - git-publish = python3Packages.callPackage ../applications/version-management/git-and-tools/git-publish { }; + git-publish = python3Packages.callPackage ../applications/version-management/git-publish { }; - git-quick-stats = callPackage ../applications/version-management/git-and-tools/git-quick-stats { }; + git-quick-stats = callPackage ../applications/version-management/git-quick-stats { }; - git-quickfix = callPackage ../applications/version-management/git-and-tools/git-quickfix { + git-quickfix = callPackage ../applications/version-management/git-quickfix { inherit (darwin.apple_sdk.frameworks) Security SystemConfiguration; }; - git-radar = callPackage ../applications/version-management/git-and-tools/git-radar { }; + git-radar = callPackage ../applications/version-management/git-radar { }; - git-recent = callPackage ../applications/version-management/git-and-tools/git-recent { + git-recent = callPackage ../applications/version-management/git-recent { util-linux = if stdenv.isLinux then util-linuxMinimal else util-linux; }; - git-remote-codecommit = python3Packages.callPackage ../applications/version-management/git-and-tools/git-remote-codecommit { }; + git-remote-codecommit = python3Packages.callPackage ../applications/version-management/git-remote-codecommit { }; gitRepo = git-repo; - git-repo = callPackage ../applications/version-management/git-and-tools/git-repo { }; + git-repo = callPackage ../applications/version-management/git-repo { }; - git-repo-updater = python3Packages.callPackage ../applications/version-management/git-and-tools/git-repo-updater { }; + git-repo-updater = python3Packages.callPackage ../applications/version-management/git-repo-updater { }; - git-review = python3Packages.callPackage ../applications/version-management/git-and-tools/git-review { }; + git-review = python3Packages.callPackage ../applications/version-management/git-review { }; - git-remote-gcrypt = callPackage ../applications/version-management/git-and-tools/git-remote-gcrypt { }; + git-remote-gcrypt = callPackage ../applications/version-management/git-remote-gcrypt { }; - git-remote-hg = callPackage ../applications/version-management/git-and-tools/git-remote-hg { }; + git-remote-hg = callPackage ../applications/version-management/git-remote-hg { }; - git-reparent = callPackage ../applications/version-management/git-and-tools/git-reparent { }; + git-reparent = callPackage ../applications/version-management/git-reparent { }; - git-secret = callPackage ../applications/version-management/git-and-tools/git-secret { }; + git-secret = callPackage ../applications/version-management/git-secret { }; - git-secrets = callPackage ../applications/version-management/git-and-tools/git-secrets { }; + git-secrets = callPackage ../applications/version-management/git-secrets { }; - git-series = callPackage ../applications/version-management/git-and-tools/git-series { + git-series = callPackage ../applications/version-management/git-series { openssl = openssl_1_1; }; - git-sizer = callPackage ../applications/version-management/git-and-tools/git-sizer { }; + git-sizer = callPackage ../applications/version-management/git-sizer { }; - git-standup = callPackage ../applications/version-management/git-and-tools/git-standup { }; + git-standup = callPackage ../applications/version-management/git-standup { }; - git-stree = callPackage ../applications/version-management/git-and-tools/git-stree { }; + git-stree = callPackage ../applications/version-management/git-stree { }; - git-subrepo = callPackage ../applications/version-management/git-and-tools/git-subrepo { }; + git-subrepo = callPackage ../applications/version-management/git-subrepo { }; - git-subset = callPackage ../applications/version-management/git-and-tools/git-subset { + git-subset = callPackage ../applications/version-management/git-subset { openssl = openssl_1_1; inherit (darwin.apple_sdk.frameworks) Security; }; - git-subtrac = callPackage ../applications/version-management/git-and-tools/git-subtrac { }; + git-subtrac = callPackage ../applications/version-management/git-subtrac { }; - git-sync = callPackage ../applications/version-management/git-and-tools/git-sync { }; + git-sync = callPackage ../applications/version-management/git-sync { }; - git-team = callPackage ../applications/version-management/git-and-tools/git-team { }; + git-team = callPackage ../applications/version-management/git-team { }; - git-test = callPackage ../applications/version-management/git-and-tools/git-test { }; + git-test = callPackage ../applications/version-management/git-test { }; - git-town = callPackage ../applications/version-management/git-and-tools/git-town { }; + git-town = callPackage ../applications/version-management/git-town { }; - git-trim = callPackage ../applications/version-management/git-and-tools/git-trim { + git-trim = callPackage ../applications/version-management/git-trim { openssl = openssl_1_1; inherit (darwin.apple_sdk.frameworks) Security; }; - git-up = callPackage ../applications/version-management/git-and-tools/git-up { + git-up = callPackage ../applications/version-management/git-up { pythonPackages = python3Packages; }; - git-vanity-hash = callPackage ../applications/version-management/git-and-tools/git-vanity-hash { }; + git-vanity-hash = callPackage ../applications/version-management/git-vanity-hash { }; - git-vendor = callPackage ../applications/version-management/git-and-tools/git-vendor { }; + git-vendor = callPackage ../applications/version-management/git-vendor { }; - git-when-merged = callPackage ../applications/version-management/git-and-tools/git-when-merged { }; + git-when-merged = callPackage ../applications/version-management/git-when-merged { }; - git-workspace = callPackage ../applications/version-management/git-and-tools/git-workspace { + git-workspace = callPackage ../applications/version-management/git-workspace { inherit (darwin.apple_sdk.frameworks) Security; }; - git2cl = callPackage ../applications/version-management/git-and-tools/git2cl { }; + git2cl = callPackage ../applications/version-management/git2cl { }; - gitbatch = callPackage ../applications/version-management/git-and-tools/gitbatch { }; + gitbatch = callPackage ../applications/version-management/gitbatch { }; - gitflow = callPackage ../applications/version-management/git-and-tools/gitflow { }; + gitflow = callPackage ../applications/version-management/gitflow { }; gitfs = callPackage ../tools/filesystems/gitfs { }; - gitless = callPackage ../applications/version-management/git-and-tools/gitless { }; + gitless = callPackage ../applications/version-management/gitless { }; - gitlint = python3Packages.callPackage ../applications/version-management/git-and-tools/gitlint { }; + gitlint = python3Packages.callPackage ../applications/version-management/gitlint { }; - gitls = callPackage ../applications/version-management/git-and-tools/gitls { }; + gitls = callPackage ../applications/version-management/gitls { }; - gitmux = callPackage ../applications/version-management/git-and-tools/gitmux { }; + gitmux = callPackage ../applications/version-management/gitmux { }; - gitnuro = callPackage ../applications/version-management/git-and-tools/gitnuro { }; + gitnuro = callPackage ../applications/version-management/gitnuro { }; - gitsign = callPackage ../applications/version-management/git-and-tools/gitsign { }; + gitsign = callPackage ../applications/version-management/gitsign { }; - gitstats = callPackage ../applications/version-management/git-and-tools/gitstats { }; + gitstats = callPackage ../applications/version-management/gitstats { }; - gitstatus = callPackage ../applications/version-management/git-and-tools/gitstatus { }; + gitstatus = callPackage ../applications/version-management/gitstatus { }; - gitty = callPackage ../applications/version-management/git-and-tools/gitty { }; + gitty = callPackage ../applications/version-management/gitty { }; - gitui = callPackage ../applications/version-management/git-and-tools/gitui { + gitui = callPackage ../applications/version-management/gitui { inherit (darwin.apple_sdk.frameworks) Security AppKit; }; - gitweb = callPackage ../applications/version-management/git-and-tools/gitweb { }; + gitweb = callPackage ../applications/version-management/gitweb { }; - glab = callPackage ../applications/version-management/git-and-tools/glab { }; + glab = callPackage ../applications/version-management/glab { }; - glitter = callPackage ../applications/version-management/git-and-tools/glitter { }; + glitter = callPackage ../applications/version-management/glitter { }; - gst = callPackage ../applications/version-management/git-and-tools/gst { }; + gst = callPackage ../applications/version-management/gst { }; - hub = callPackage ../applications/version-management/git-and-tools/hub { }; + hub = callPackage ../applications/version-management/hub { }; - hut = callPackage ../applications/version-management/git-and-tools/hut { }; + hut = callPackage ../applications/version-management/hut { }; - josh = callPackage ../applications/version-management/git-and-tools/josh { }; + josh = callPackage ../applications/version-management/josh { }; - lab = callPackage ../applications/version-management/git-and-tools/lab { }; + lab = callPackage ../applications/version-management/lab { }; - lefthook = callPackage ../applications/version-management/git-and-tools/lefthook { }; + lefthook = callPackage ../applications/version-management/lefthook { }; - legit = callPackage ../applications/version-management/git-and-tools/legit { }; + legit = callPackage ../applications/version-management/legit { }; - lucky-commit = callPackage ../applications/version-management/git-and-tools/lucky-commit { + lucky-commit = callPackage ../applications/version-management/lucky-commit { inherit (darwin.apple_sdk.frameworks) OpenCL; }; - pass-git-helper = python3Packages.callPackage ../applications/version-management/git-and-tools/pass-git-helper { }; + pass-git-helper = python3Packages.callPackage ../applications/version-management/pass-git-helper { }; - qgit = qt5.callPackage ../applications/version-management/git-and-tools/qgit { }; + qgit = qt5.callPackage ../applications/version-management/qgit { }; - radicle-cli = callPackage ../applications/version-management/git-and-tools/radicle-cli { + radicle-cli = callPackage ../applications/version-management/radicle-cli { inherit (darwin) DarwinTools; inherit (darwin.apple_sdk.frameworks) AppKit; }; - radicle-upstream = callPackage ../applications/version-management/git-and-tools/radicle-upstream { }; + radicle-upstream = callPackage ../applications/version-management/radicle-upstream { }; - rs-git-fsmonitor = callPackage ../applications/version-management/git-and-tools/rs-git-fsmonitor { }; + rs-git-fsmonitor = callPackage ../applications/version-management/rs-git-fsmonitor { }; - scmpuff = callPackage ../applications/version-management/git-and-tools/scmpuff { }; + scmpuff = callPackage ../applications/version-management/scmpuff { }; - stgit = callPackage ../applications/version-management/git-and-tools/stgit { }; + stgit = callPackage ../applications/version-management/stgit { }; - subgit = callPackage ../applications/version-management/git-and-tools/subgit { }; + subgit = callPackage ../applications/version-management/subgit { }; - svn-all-fast-export = libsForQt5.callPackage ../applications/version-management/git-and-tools/svn-all-fast-export { }; + svn-all-fast-export = libsForQt5.callPackage ../applications/version-management/svn-all-fast-export { }; - svn2git = callPackage ../applications/version-management/git-and-tools/svn2git { + svn2git = callPackage ../applications/version-management/svn2git { git = gitSVN; }; - thicket = callPackage ../applications/version-management/git-and-tools/thicket { }; + thicket = callPackage ../applications/version-management/thicket { }; - tig = callPackage ../applications/version-management/git-and-tools/tig { + tig = callPackage ../applications/version-management/tig { readline = readline81; }; - top-git = callPackage ../applications/version-management/git-and-tools/topgit { }; + top-git = callPackage ../applications/version-management/topgit { }; - transcrypt = callPackage ../applications/version-management/git-and-tools/transcrypt { }; + transcrypt = callPackage ../applications/version-management/transcrypt { }; inherit (haskellPackages) git-annex; @@ -2193,7 +2200,14 @@ with pkgs; callPackage ../applications/emulators/retroarch/wrapper.nix { inherit retroarch; }; - retroarch = wrapRetroArch { retroarch = retroarchBare; }; + retroarch = wrapRetroArch { + retroarch = retroarchBare.override { + withAssets = true; + withCoreInfo = true; + }; + }; + + retroarch-assets = callPackage ../applications/emulators/retroarch/retroarch-assets.nix { }; libretro = recurseIntoAttrs (callPackage ../applications/emulators/retroarch/cores.nix { @@ -2683,6 +2697,8 @@ with pkgs; azure-functions-core-tools = callPackage ../development/tools/azure-functions-core-tools { }; + azure-static-sites-client = callPackage ../development/tools/azure-static-sites-client { }; + azure-storage-azcopy = callPackage ../development/tools/azcopy { }; bashblog = callPackage ../tools/text/bashblog { }; @@ -3251,7 +3267,7 @@ with pkgs; passExtensions = recurseIntoAttrs pass.extensions; - pdepend = callPackage ../development/php-packages/pdepend/default.nix { }; + pdepend = callPackage ../development/php-packages/pdepend { }; platformsh = callPackage ../misc/platformsh { }; @@ -4582,6 +4598,8 @@ with pkgs; gdu = callPackage ../tools/system/gdu { }; + gfxreconstruct = callPackage ../tools/graphics/gfxreconstruct { }; + go-chromecast = callPackage ../applications/video/go-chromecast { }; go-containerregistry = callPackage ../development/tools/go-containerregistry { }; @@ -5082,7 +5100,7 @@ with pkgs; nixel = callPackage ../tools/nix/nixel { }; - nix-output-monitor = callPackage ../tools/nix/nix-output-monitor { haskellPackages = haskell.packages.ghc92; }; + nix-output-monitor = callPackage ../tools/nix/nix-output-monitor { }; nix-template = callPackage ../tools/package-management/nix-template { inherit (darwin.apple_sdk.frameworks) Security; @@ -6011,6 +6029,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreFoundation Security; }; + cask-server = libsForQt5.callPackage ../applications/misc/cask-server { }; + code-browser-qt = libsForQt5.callPackage ../applications/editors/code-browser { withQt = true; }; code-browser-gtk2 = callPackage ../applications/editors/code-browser { withGtk2 = true; }; code-browser-gtk = callPackage ../applications/editors/code-browser { withGtk3 = true; }; @@ -9431,6 +9451,8 @@ with pkgs; mars-mips = callPackage ../development/tools/mars-mips { }; + maui-shell = libsForQt5.callPackage ../applications/window-managers/maui-shell { }; + mawk = callPackage ../tools/text/mawk { }; mb2md = callPackage ../tools/text/mb2md { }; @@ -9837,9 +9859,6 @@ with pkgs; ngrep = callPackage ../tools/networking/ngrep { }; - neuron-notes = haskell.lib.compose.justStaticExecutables - (haskellPackages.generateOptparseApplicativeCompletions [ "neuron" ] haskellPackages.neuron); - ngrok = callPackage ../tools/networking/ngrok { }; nifi = callPackage ../servers/web-apps/nifi { }; @@ -10272,6 +10291,8 @@ with pkgs; opae = callPackage ../development/libraries/opae { }; + open-pdf-sign = callPackage ../tools/misc/open-pdf-sign { }; + opentelemetry-collector = callPackage ../tools/misc/opentelemetry-collector { }; opentelemetry-collector-contrib = callPackage ../tools/misc/opentelemetry-collector/contrib.nix { }; @@ -10442,10 +10463,6 @@ with pkgs; perceptualdiff = callPackage ../tools/graphics/perceptualdiff { }; percona-xtrabackup = percona-xtrabackup_8_0; - percona-xtrabackup_2_4 = callPackage ../tools/backup/percona-xtrabackup/2_4.nix { - boost = boost159; - openssl = openssl_1_1; - }; percona-xtrabackup_8_0 = callPackage ../tools/backup/percona-xtrabackup/8_0.nix { boost = boost177; openssl = openssl_1_1; @@ -10640,7 +10657,10 @@ with pkgs; plantuml-server = callPackage ../tools/misc/plantuml-server { }; - plan9port = callPackage ../tools/system/plan9port { }; + plan9port = darwin.apple_sdk_11_0.callPackage ../tools/system/plan9port { + inherit (darwin.apple_sdk_11_0.frameworks) Carbon Cocoa IOKit Metal QuartzCore; + inherit (darwin) DarwinTools; + }; platformioPackages = dontRecurseIntoAttrs (callPackage ../development/embedded/platformio { }); platformio = platformioPackages.platformio-chrootenv; @@ -10753,6 +10773,8 @@ with pkgs; polypane = callPackage ../applications/networking/browsers/polypane { }; + pomsky = callPackage ../tools/text/pomsky { }; + ponysay = callPackage ../tools/misc/ponysay { }; popfile = callPackage ../tools/text/popfile { }; @@ -11222,6 +11244,8 @@ with pkgs; rhash = callPackage ../tools/security/rhash { }; + rhoas = callPackage ../tools/admin/rhoas { }; + riemann_c_client = callPackage ../tools/misc/riemann-c-client { }; riemann-tools = callPackage ../tools/misc/riemann-tools { }; @@ -11865,7 +11889,7 @@ with pkgs; squashfsTools = callPackage ../tools/filesystems/squashfs { }; - squashfs-tools-ng = callPackage ../tools/filesystems/squashfs-tools-ng { }; + squashfs-tools-ng = darwin.apple_sdk_11_0.callPackage ../tools/filesystems/squashfs-tools-ng { }; squashfuse = callPackage ../tools/filesystems/squashfuse { }; @@ -12091,6 +12115,8 @@ with pkgs; tarsnapper = callPackage ../tools/backup/tarsnapper { }; + tarantool = callPackage ../servers/tarantool { }; + tarssh = callPackage ../servers/tarssh { }; tartan = callPackage ../development/tools/analysis/tartan {}; @@ -13072,6 +13098,8 @@ with pkgs; urlwatch = callPackage ../tools/networking/urlwatch { }; + vals = callPackage ../tools/security/vals { }; + valum = callPackage ../development/web/valum { }; inherit (callPackages ../servers/varnish { }) @@ -13560,6 +13588,8 @@ with pkgs; fishPlugins = recurseIntoAttrs (callPackage ../shells/fish/plugins { }); + fzf-git-sh = callPackage ../shells/fzf-git-sh {}; + ion = callPackage ../shells/ion { inherit (darwin) Security; }; @@ -14419,12 +14449,12 @@ with pkgs; gnu-smalltalk = callPackage ../development/compilers/gnu-smalltalk { }; - gccgo = gccgo6; - gccgo6 = wrapCC (gcc6.cc.override { - name = "gccgo6"; + gccgo = wrapCC (gcc.cc.override { + name = "gccgo"; langCC = true; #required for go. langC = true; langGo = true; + langJit = true; profiledCompiler = false; }); @@ -14476,13 +14506,11 @@ with pkgs; haskell = callPackage ./haskell-packages.nix { }; - # Please update doc/languages-frameworks/haskell.section.md, “Our - # current default compiler is”, if you bump this: haskellPackages = dontRecurseIntoAttrs # Prefer native-bignum to avoid linking issues with gmp (if stdenv.hostPlatform.isStatic - then haskell.packages.native-bignum.ghc90 - else haskell.packages.ghc90); + then haskell.packages.native-bignum.ghc92 + else haskell.packages.ghc92); # haskellPackages.ghc is build->host (it exposes the compiler used to build the # set, similarly to stdenv.cc), but pkgs.ghc should be host->target to be more @@ -14495,8 +14523,8 @@ with pkgs; ghc = targetPackages.haskellPackages.ghc or # Prefer native-bignum to avoid linking issues with gmp (if stdenv.targetPlatform.isStatic - then haskell.compiler.native-bignum.ghc90 - else haskell.compiler.ghc90); + then haskell.compiler.native-bignum.ghc92 + else haskell.compiler.ghc92); cabal-install = haskell.lib.compose.justStaticExecutables haskellPackages.cabal-install; @@ -14626,6 +14654,10 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security; }; + iay = callPackage ../tools/misc/iay { + inherit (darwin.apple_sdk.frameworks) AppKit Security Foundation Cocoa; + }; + idrisPackages = dontRecurseIntoAttrs (callPackage ../development/idris-modules { idris-no-deps = haskellPackages.idris; }); @@ -15380,6 +15412,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security SystemConfiguration; }; cargo-modules = callPackage ../development/tools/rust/cargo-modules { }; + cargo-mommy = callPackage ../development/tools/rust/cargo-mommy { }; cargo-msrv = callPackage ../development/tools/rust/cargo-msrv { inherit (darwin.apple_sdk.frameworks) Security; }; @@ -15392,9 +15425,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security; }; cargo-readme = callPackage ../development/tools/rust/cargo-readme {}; - cargo-semver-checks = callPackage ../development/tools/rust/cargo-semver-checks { - inherit (darwin.apple_sdk.frameworks) Security; - }; + cargo-semver-checks = callPackage ../development/tools/rust/cargo-semver-checks { }; cargo-show-asm = callPackage ../development/tools/rust/cargo-show-asm { }; @@ -15750,7 +15781,9 @@ with pkgs; mbqn = callPackage ../development/interpreters/bqn/mlochbaum-bqn { }; cbqn = cbqn-bootstrap.phase2; + cbqn-replxx = cbqn-bootstrap.phase2-replxx; cbqn-standalone = cbqn-bootstrap.phase0; + cbqn-standalone-replxx = cbqn-bootstrap.phase0-replxx; # Below, the classic self-bootstrapping process cbqn-bootstrap = lib.dontRecurseIntoAttrs { @@ -15775,6 +15808,14 @@ with pkgs; mbqn-source = null; }; + phase0-replxx = callPackage ../development/interpreters/bqn/cbqn { + inherit (cbqn-bootstrap) stdenv; + genBytecode = false; + bqn-path = null; + mbqn-source = null; + enableReplxx = true; + }; + phase1 = callPackage ../development/interpreters/bqn/cbqn { inherit (cbqn-bootstrap) mbqn-source stdenv; genBytecode = true; @@ -15786,6 +15827,13 @@ with pkgs; genBytecode = true; bqn-path = "${buildPackages.cbqn-bootstrap.phase1}/bin/cbqn"; }; + + phase2-replxx = callPackage ../development/interpreters/bqn/cbqn { + inherit (cbqn-bootstrap) mbqn-source stdenv; + genBytecode = true; + bqn-path = "${buildPackages.cbqn-bootstrap.phase1}/bin/cbqn"; + enableReplxx = true; + }; }; dbqn = callPackage ../development/interpreters/bqn/dzaima-bqn { @@ -16467,6 +16515,8 @@ with pkgs; srandrd = callPackage ../tools/X11/srandrd { }; + sratoolkit = callPackage ../applications/science/biology/sratoolkit { }; + srecord = callPackage ../development/tools/misc/srecord { }; srelay = callPackage ../tools/networking/srelay { }; @@ -17263,6 +17313,8 @@ with pkgs; fprettify = callPackage ../development/tools/fprettify { }; + fortls = python3.pkgs.callPackage ../development/tools/fortls { }; + fortran-language-server = python3.pkgs.callPackage ../development/tools/fortran-language-server { }; framac = callPackage ../development/tools/analysis/frama-c { }; @@ -17431,6 +17483,8 @@ with pkgs; heroku = callPackage ../development/tools/heroku { }; + highlight-assertions = callPackage ../development/tools/misc/highlight-assertions { }; + ccloud-cli = callPackage ../development/tools/ccloud-cli { }; confluent-cli = callPackage ../development/tools/confluent-cli { }; @@ -18626,7 +18680,13 @@ with pkgs; c-blosc = callPackage ../development/libraries/c-blosc { }; # justStaticExecutables is needed due to https://github.com/NixOS/nix/issues/2990 - cachix = haskell.lib.compose.justStaticExecutables haskellPackages.cachix; + cachix = (haskell.lib.compose.justStaticExecutables haskellPackages.cachix).overrideAttrs(o: { + passthru = o.passthru or {} // { + tests = o.passthru.tests or {} // { + inherit hci; + }; + }; + }); cubeb = callPackage ../development/libraries/audio/cubeb { }; @@ -19544,7 +19604,7 @@ with pkgs; grpc = callPackage ../development/libraries/grpc { # grpc builds with c++17 so abseil must also be built that way abseil-cpp = abseil-cpp_202206.override { - cxxStandard = "17"; + cxxStandard = grpc.cxxStandard; }; }; @@ -22895,6 +22955,8 @@ with pkgs; tageditor = libsForQt5.callPackage ../applications/audio/tageditor { }; + ta-lib = callPackage ../development/libraries/ta-lib { }; + taglib = callPackage ../development/libraries/taglib { }; taglib_extras = callPackage ../development/libraries/taglib-extras { }; @@ -23578,7 +23640,7 @@ with pkgs; R = callPackage ../applications/science/math/R { # TODO: split docs into a separate output texLive = texlive.combine { - inherit (texlive) scheme-small inconsolata helvetic texinfo fancyvrb cm-super; + inherit (texlive) scheme-small inconsolata helvetic texinfo fancyvrb cm-super rsfs; }; withRecommendedPackages = false; inherit (darwin.apple_sdk.frameworks) Cocoa Foundation; @@ -23655,8 +23717,8 @@ with pkgs; mod_tile = callPackage ../servers/http/apache-modules/mod_tile { }; mod_wsgi = self.mod_wsgi2; - mod_wsgi2 = callPackage ../servers/http/apache-modules/mod_wsgi { python = python2; ncurses = null; }; - mod_wsgi3 = callPackage ../servers/http/apache-modules/mod_wsgi { python = python3; }; + mod_wsgi2 = throw "mod_wsgi2 has been removed since Python 2 is EOL. Use mod_wsgi3 instead"; + mod_wsgi3 = callPackage ../servers/http/apache-modules/mod_wsgi { }; mod_itk = callPackage ../servers/http/apache-modules/mod_itk { }; @@ -24077,6 +24139,9 @@ with pkgs; micronaut = callPackage ../development/tools/micronaut {}; minio = callPackage ../servers/minio { }; + # Keep around to allow people to migrate their data from the old legacy fs format + # https://github.com/minio/minio/releases/tag/RELEASE.2022-10-29T06-21-33Z + minio_legacy_fs = callPackage ../servers/minio/legacy_fs.nix { }; mkchromecast = libsForQt5.callPackage ../applications/networking/mkchromecast { }; @@ -24333,9 +24398,7 @@ with pkgs; mariadb-connector-c_3_1 = callPackage ../servers/sql/mariadb/connector-c/3_1.nix { }; mariadb-connector-c_3_2 = callPackage ../servers/sql/mariadb/connector-c/3_2.nix { }; - mariadb-galera = callPackage ../servers/sql/mariadb/galera { - asio = asio_1_10; - }; + mariadb-galera = callPackage ../servers/sql/mariadb/galera { }; inherit (import ../servers/sql/mariadb pkgs) mariadb_104 @@ -24391,11 +24454,18 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreFoundation Security; }; - mongodb-6_0 = callPackage ../servers/nosql/mongodb/6.0.nix { + mongodb-6_0 = darwin.apple_sdk_11_0.callPackage ../servers/nosql/mongodb/6.0.nix { sasl = cyrus_sasl; boost = boost178.override { enableShared = false; }; inherit (darwin) cctools; inherit (darwin.apple_sdk.frameworks) CoreFoundation Security; + stdenv = if stdenv.isDarwin then + darwin.apple_sdk_11_0.stdenv.override (old: { + hostPlatform = old.hostPlatform // { darwinMinVersion = "10.14"; }; + buildPlatform = old.buildPlatform // { darwinMinVersion = "10.14"; }; + targetPlatform = old.targetPlatform // { darwinMinVersion = "10.14"; }; + }) else + if stdenv.cc.isClang then llvmPackages.stdenv else stdenv; }; nginx-sso = callPackage ../servers/nginx-sso { }; @@ -24756,6 +24826,8 @@ with pkgs; thttpd = callPackage ../servers/http/thttpd { }; + static-web-server = callPackage ../servers/static-web-server { }; + storm = callPackage ../servers/computing/storm { }; surrealdb = callPackage ../servers/nosql/surrealdb { @@ -25383,6 +25455,8 @@ with pkgs; libatasmart = callPackage ../os-specific/linux/libatasmart { }; + libax25 = callPackage ../development/libraries/libax25 { }; + libcgroup = callPackage ../os-specific/linux/libcgroup { }; libkrun = callPackage ../development/libraries/libkrun { @@ -25424,6 +25498,8 @@ with pkgs; osxsnarf = callPackage ../os-specific/darwin/osxsnarf { }; + plistwatch = callPackage ../os-specific/darwin/plistwatch { }; + power-calibrate = callPackage ../os-specific/linux/power-calibrate { }; powercap = callPackage ../os-specific/linux/powercap { }; @@ -26003,6 +26079,8 @@ with pkgs; seturgent = callPackage ../os-specific/linux/seturgent { }; + sgx-azure-dcap-client = callPackage ../os-specific/linux/sgx/azure-dcap-client { }; + sgx-sdk = callPackage ../os-specific/linux/sgx/sdk { }; sgx-ssl = callPackage ../os-specific/linux/sgx/ssl { }; @@ -26572,6 +26650,8 @@ with pkgs; flat-remix-gtk = callPackage ../data/themes/flat-remix-gtk { }; flat-remix-gnome = callPackage ../data/themes/flat-remix-gnome { }; + fluent-gtk-theme = callPackage ../data/themes/fluent-gtk-theme { }; + fluent-icon-theme = callPackage ../data/icons/fluent-icon-theme { }; font-awesome_4 = (callPackage ../data/fonts/font-awesome { }).v4; @@ -26585,6 +26665,8 @@ with pkgs; freepats = callPackage ../data/misc/freepats { }; + garamond-libre = callPackage ../data/fonts/garamond-libre { }; + g15daemon = callPackage ../os-specific/linux/g15daemon {}; galatia-sil = callPackage ../data/fonts/galatia-sil { }; @@ -26627,6 +26709,8 @@ with pkgs; inherit (plasma5Packages) breeze-icons; }; + gruvbox-gtk-theme = callPackage ../data/themes/gruvbox-gtk-theme {}; + gubbi-font = callPackage ../data/fonts/gubbi { }; gyre-fonts = callPackage ../data/fonts/gyre {}; @@ -28204,6 +28288,8 @@ with pkgs; dmenu = callPackage ../applications/misc/dmenu { }; dmenu-wayland = callPackage ../applications/misc/dmenu/wayland.nix { }; + dmenu-rs = callPackage ../applications/misc/dmenu-rs { }; + dmensamenu = callPackage ../applications/misc/dmensamenu { inherit (python3Packages) buildPythonApplication requests; }; @@ -29271,9 +29357,7 @@ with pkgs; gollum = callPackage ../applications/misc/gollum { }; - gonic = callPackage ../servers/gonic { - inherit (darwin.apple_sdk.frameworks) AppKit AudioToolbox; - }; + gonic = callPackage ../servers/gonic { }; goodvibes = callPackage ../applications/audio/goodvibes { }; @@ -29551,6 +29635,8 @@ with pkgs; slack-term = callPackage ../applications/networking/instant-messengers/slack-term { }; + slweb = callPackage ../applications/misc/slweb { }; + singularity = callPackage ../applications/virtualization/singularity { }; sonixd = callPackage ../applications/audio/sonixd { }; @@ -30360,6 +30446,8 @@ with pkgs; lscolors = callPackage ../applications/misc/lscolors { }; + lswt = callPackage ../applications/misc/lswt { }; + luddite = with python3Packages; toPythonApplication luddite; goobook = with python3Packages; toPythonApplication goobook; @@ -30787,6 +30875,7 @@ with pkgs; mpvScripts = recurseIntoAttrs { autoload = callPackage ../applications/video/mpv/scripts/autoload.nix {}; convert = callPackage ../applications/video/mpv/scripts/convert.nix {}; + inhibit-gnome = callPackage ../applications/video/mpv/scripts/inhibit-gnome.nix {}; mpris = callPackage ../applications/video/mpv/scripts/mpris.nix {}; mpv-playlistmanager = callPackage ../applications/video/mpv/scripts/mpv-playlistmanager.nix {}; mpvacious = callPackage ../applications/video/mpv/scripts/mpvacious.nix {}; @@ -30891,6 +30980,8 @@ with pkgs; nwg-bar = callPackage ../applications/misc/nwg-bar { }; + nwg-dock = callPackage ../applications/misc/nwg-dock { }; + nwg-drawer = callPackage ../applications/misc/nwg-drawer { }; nwg-launchers = callPackage ../applications/misc/nwg-launchers { }; @@ -32820,8 +32911,8 @@ with pkgs; vdpauinfo = callPackage ../tools/X11/vdpauinfo { }; - vengi-tools = callPackage ../applications/graphics/vengi-tools { - inherit (darwin.apple_sdk.frameworks) Carbon CoreServices OpenCL; + vengi-tools = darwin.apple_sdk_11_0.callPackage ../applications/graphics/vengi-tools { + inherit (darwin.apple_sdk_11_0.frameworks) Carbon CoreServices OpenCL; }; verbiste = callPackage ../applications/misc/verbiste { @@ -33205,6 +33296,8 @@ with pkgs; cl-wordle = callPackage ../games/cl-wordle { }; + wordbook = callPackage ../applications/misc/wordbook { }; + wordnet = callPackage ../applications/misc/wordnet { inherit (darwin.apple_sdk.frameworks) Cocoa; }; @@ -33908,6 +34001,8 @@ with pkgs; beancount = with python3.pkgs; toPythonApplication beancount; + beancount-black = with python3.pkgs; toPythonApplication beancount-black; + beancount-language-server = callPackage ../development/tools/beancount-language-server {}; bean-add = callPackage ../applications/office/beancount/bean-add.nix { }; @@ -36390,6 +36485,8 @@ with pkgs; python3 = python39; }; + grap = callPackage ../tools/security/grap { }; + gravit = callPackage ../applications/science/astronomy/gravit { }; golly = callPackage ../applications/science/misc/golly { @@ -37205,7 +37302,9 @@ with pkgs; sticky = callPackage ../applications/misc/sticky { }; - stork = callPackage ../applications/misc/stork { }; + stork = darwin.apple_sdk_11_0.callPackage ../applications/misc/stork { + inherit (darwin.apple_sdk_11_0.frameworks) Security; + }; superd = callPackage ../misc/superd { }; diff --git a/pkgs/top-level/darwin-packages.nix b/pkgs/top-level/darwin-packages.nix index 8c1e259525044..c270dd2220ddf 100644 --- a/pkgs/top-level/darwin-packages.nix +++ b/pkgs/top-level/darwin-packages.nix @@ -205,4 +205,23 @@ impure-cmds // appleSourcePackages // chooseLibs // { discrete-scroll = callPackage ../os-specific/darwin/discrete-scroll { }; + # See doc/builders/special/darwin-builder.section.md + builder = + let + toGuest = builtins.replaceStrings [ "darwin" ] [ "linux" ]; + + nixos = import ../../nixos { + configuration = { + imports = [ + ../../nixos/modules/profiles/macos-builder.nix + ]; + + virtualisation.host = { inherit pkgs; }; + }; + + system = toGuest stdenv.hostPlatform.system; + }; + + in + nixos.config.system.build.macos-builder-installer; }) diff --git a/pkgs/top-level/lua-packages.nix b/pkgs/top-level/lua-packages.nix index 261f92c498ca5..73a4efae15b71 100644 --- a/pkgs/top-level/lua-packages.nix +++ b/pkgs/top-level/lua-packages.nix @@ -59,19 +59,19 @@ in # a fork of luarocks used to generate nix lua derivations from rockspecs luarocks-nix = callPackage ../development/tools/misc/luarocks/luarocks-nix.nix { }; - luxio = callPackage ({ fetchurl, which, pkg-config }: buildLuaPackage { + luxio = callPackage ({ fetchurl, which, pkg-config }: buildLuaPackage rec { pname = "luxio"; version = "13"; src = fetchurl { - url = "https://git.gitano.org.uk/luxio.git/snapshot/luxio-luxio-13.tar.bz2"; + url = "https://git.gitano.org.uk/luxio.git/snapshot/luxio-luxio-${version}.tar.bz2"; sha256 = "1hvwslc25q7k82rxk461zr1a2041nxg7sn3sw3w0y5jxf0giz2pz"; }; nativeBuildInputs = [ which pkg-config ]; postPatch = '' - patchShebangs . + patchShebangs const-proc.lua ''; preBuild = '' @@ -80,7 +80,7 @@ in INST_LUADIR="$out/share/lua/${lua.luaversion}" LUA_BINDIR="$out/bin" INSTALL=install - ); + ); ''; meta = with lib; { @@ -91,14 +91,14 @@ in maintainers = with maintainers; [ richardipsum ]; platforms = platforms.unix; }; - }); + }) {}; nfd = callPackage ../development/lua-modules/nfd { inherit (pkgs.gnome) zenity; inherit (pkgs.darwin.apple_sdk.frameworks) AppKit; }; - vicious = (callPackage ({ fetchFromGitHub }: stdenv.mkDerivation rec { + vicious = callPackage ({ fetchFromGitHub }: stdenv.mkDerivation rec { pname = "vicious"; version = "2.5.1"; @@ -124,6 +124,5 @@ in maintainers = with maintainers; [ makefu mic92 McSinyx ]; platforms = platforms.linux; }; - }) {}); - + }) {}; } diff --git a/pkgs/top-level/nim-packages.nix b/pkgs/top-level/nim-packages.nix index a666177a92f1e..2277a1f1b7b41 100644 --- a/pkgs/top-level/nim-packages.nix +++ b/pkgs/top-level/nim-packages.nix @@ -26,6 +26,9 @@ lib.makeScope newScope (self: frosty = callPackage ../development/nim-packages/frosty { }; + getdns = callPackage ../development/nim-packages/getdns { + inherit (pkgs) getdns; }; + hts-nim = callPackage ../development/nim-packages/hts-nim { }; jester = callPackage ../development/nim-packages/jester { }; diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 39503ee138b15..27d42a85c5a8d 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -1570,7 +1570,7 @@ let if lib.versionOlder "4.10.2" ocaml.version then import ../development/ocaml-modules/janestreet/0.15.nix { inherit self; - inherit (pkgs) fetchpatch lib openssl zstd; + inherit (pkgs) bash fetchpatch lib openssl zstd; } else if lib.versionOlder "4.08" ocaml.version then import ../development/ocaml-modules/janestreet/0.14.nix { diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 405b9de1c9db8..04b03d978f6ee 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -1188,6 +1188,10 @@ self: super: with self; { beancount = callPackage ../development/python-modules/beancount { }; + beancount-black = callPackage ../development/python-modules/beancount-black { }; + + beancount-parser = callPackage ../development/python-modules/beancount-parser { }; + beancount_docverif = callPackage ../development/python-modules/beancount_docverif { }; beanstalkc = callPackage ../development/python-modules/beanstalkc { }; @@ -1439,6 +1443,8 @@ self: super: with self; { btrfsutil = callPackage ../development/python-modules/btrfsutil { }; + btsmarthub_devicelist = callPackage ../development/python-modules/btsmarthub_devicelist { }; + btsocket = callPackage ../development/python-modules/btsocket { }; bucketstore = callPackage ../development/python-modules/bucketstore { }; @@ -2489,6 +2495,8 @@ self: super: with self; { django-celery-email = callPackage ../development/python-modules/django-celery-email { }; + django-celery-results = callPackage ../development/python-modules/django-celery-results { }; + django_classytags = callPackage ../development/python-modules/django_classytags { }; django-cleanup = callPackage ../development/python-modules/django-cleanup { }; @@ -5886,6 +5894,8 @@ self: super: with self; { mongoengine = callPackage ../development/python-modules/mongoengine { }; + mongoquery = callPackage ../development/python-modules/mongoquery { }; + monkeyhex = callPackage ../development/python-modules/monkeyhex { }; monosat = pkgs.monosat.python { @@ -6658,6 +6668,8 @@ self: super: with self; { packet-python = callPackage ../development/python-modules/packet-python { }; + packvers = callPackage ../development/python-modules/packvers { }; + pafy = callPackage ../development/python-modules/pafy { }; pagelabels = callPackage ../development/python-modules/pagelabels { }; @@ -12030,6 +12042,8 @@ self: super: with self; { wled = callPackage ../development/python-modules/wled { }; + wn = callPackage ../development/python-modules/wn { }; + woob = callPackage ../development/python-modules/woob { }; woodblock = callPackage ../development/python-modules/woodblock { }; diff --git a/pkgs/top-level/qt5-packages.nix b/pkgs/top-level/qt5-packages.nix index 116ad216e025a..f8139b7dab527 100644 --- a/pkgs/top-level/qt5-packages.nix +++ b/pkgs/top-level/qt5-packages.nix @@ -152,6 +152,8 @@ in (kdeFrameworks // plasmaMobileGear // plasma5 // plasma5.thirdParty // kdeGea maplibre-gl-native = callPackage ../development/libraries/maplibre-gl-native { }; + maui-core = libsForQt5.callPackage ../development/libraries/maui-core { }; + mlt = callPackage ../development/libraries/mlt/qt-5.nix { }; phonon = callPackage ../development/libraries/phonon { }; diff --git a/pkgs/top-level/release-haskell.nix b/pkgs/top-level/release-haskell.nix index 5f18d36f29f03..da2d537f2273d 100644 --- a/pkgs/top-level/release-haskell.nix +++ b/pkgs/top-level/release-haskell.nix @@ -207,7 +207,6 @@ let # hyper-haskell # depends on electron-10.4.7 which is marked as insecure # hyper-haskell-server-with-packages # hyper-haskell-server is broken icepeak - idris ihaskell jacinda jl @@ -219,7 +218,6 @@ let matterhorn mueval naproche - neuron-notes niv nix-delegate nix-deploy @@ -390,25 +388,12 @@ let ghc-lib = released; ghc-lib-parser = released; ghc-lib-parser-ex = released; - spectacle = [ - compilerNames.ghc8107 - ]; weeder = [ compilerNames.ghc8107 compilerNames.ghc902 compilerNames.ghc924 compilerNames.ghc925 ]; - purescript = [ - compilerNames.ghc924 - compilerNames.ghc925 - ]; - purescript-cst = [ - compilerNames.ghc8107 - ]; - purescript-ast = [ - compilerNames.ghc8107 - ]; }) { mergeable = pkgs.releaseTools.aggregate { |