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-rw-r--r--nixos/modules/services/networking/mxisd.nix16
-rw-r--r--nixos/modules/services/networking/yggdrasil.nix31
-rw-r--r--nixos/modules/services/security/privacyidea.nix62
-rw-r--r--pkgs/applications/emulators/yuzu/default.nix12
-rwxr-xr-xpkgs/applications/emulators/yuzu/update.sh2
-rw-r--r--pkgs/applications/gis/qgis/unwrapped-ltr.nix4
-rw-r--r--pkgs/applications/gis/qgis/unwrapped.nix4
-rw-r--r--pkgs/applications/networking/irc/weechat/default.nix4
-rw-r--r--pkgs/applications/version-management/josh/default.nix60
-rw-r--r--pkgs/development/python-modules/patool/default.nix9
-rw-r--r--pkgs/games/sgt-puzzles/default.nix39
-rw-r--r--pkgs/servers/polaris/default.nix5
-rw-r--r--pkgs/servers/rt/default.nix7
-rw-r--r--pkgs/top-level/all-packages.nix65
-rw-r--r--pkgs/top-level/perl-packages.nix6
15 files changed, 223 insertions, 103 deletions
diff --git a/nixos/modules/services/networking/mxisd.nix b/nixos/modules/services/networking/mxisd.nix
index 803f0689d1fd1..5b1e0dee8e359 100644
--- a/nixos/modules/services/networking/mxisd.nix
+++ b/nixos/modules/services/networking/mxisd.nix
@@ -46,6 +46,15 @@ in {
         description = "The mxisd/ma1sd package to use";
       };
 
+      environmentFile = mkOption {
+        type = types.nullOr types.str;
+        default = null;
+        description = ''
+          Path to an environment-file which may contain secrets to be
+          substituted via <package>envsubst</package>.
+        '';
+      };
+
       dataDir = mkOption {
         type = types.str;
         default = "/var/lib/mxisd";
@@ -118,7 +127,12 @@ in {
         Type = "simple";
         User = "mxisd";
         Group = "mxisd";
-        ExecStart = "${cfg.package}/bin/${executable} -c ${configFile}";
+        EnvironmentFile = mkIf (cfg.environmentFile != null) [ cfg.environmentFile ];
+        ExecStart = "${cfg.package}/bin/${executable} -c ${cfg.dataDir}/mxisd-config.yaml";
+        ExecStartPre = "${pkgs.writeShellScript "mxisd-substitute-secrets" ''
+          ${pkgs.envsubst}/bin/envsubst -o ${cfg.dataDir}/mxisd-config.yaml \
+            -i ${configFile}
+        ''}";
         WorkingDirectory = cfg.dataDir;
         Restart = "on-failure";
       };
diff --git a/nixos/modules/services/networking/yggdrasil.nix b/nixos/modules/services/networking/yggdrasil.nix
index 99c18ae6919ea..ae681988ea119 100644
--- a/nixos/modules/services/networking/yggdrasil.nix
+++ b/nixos/modules/services/networking/yggdrasil.nix
@@ -61,10 +61,10 @@ in {
       };
 
       group = mkOption {
-        type = types.str;
-        default = "root";
+        type = types.nullOr types.str;
+        default = null;
         example = "wheel";
-        description = "Group to grant access to the Yggdrasil control socket.";
+        description = "Group to grant access to the Yggdrasil control socket. If <code>null</code>, only root can access the socket.";
       };
 
       openMulticastPort = mkOption {
@@ -154,27 +154,16 @@ in {
         ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
         Restart = "always";
 
-        Group = cfg.group;
+        DynamicUser = true;
+        StateDirectory = "yggdrasil";
         RuntimeDirectory = "yggdrasil";
         RuntimeDirectoryMode = "0750";
         BindReadOnlyPaths = lib.optional configFileProvided cfg.configFile
           ++ lib.optional cfg.persistentKeys keysPath;
+        ReadWritePaths = "/run/yggdrasil";
 
-        # TODO: as of yggdrasil 0.3.8 and systemd 243, yggdrasil fails
-        # to set up the network adapter when DynamicUser is set.  See
-        # github.com/yggdrasil-network/yggdrasil-go/issues/557.  The
-        # following options are implied by DynamicUser according to
-        # the systemd.exec documentation, and can be removed if the
-        # upstream issue is fixed and DynamicUser is set to true:
-        PrivateTmp = true;
-        RemoveIPC = true;
-        NoNewPrivileges = true;
-        ProtectSystem = "strict";
-        RestrictSUIDSGID = true;
-        # End of list of options implied by DynamicUser.
-
-        AmbientCapabilities = "CAP_NET_ADMIN";
-        CapabilityBoundingSet = "CAP_NET_ADMIN";
+        AmbientCapabilities = "CAP_NET_ADMIN CAP_NET_BIND_SERVICE";
+        CapabilityBoundingSet = "CAP_NET_ADMIN CAP_NET_BIND_SERVICE";
         MemoryDenyWriteExecute = true;
         ProtectControlGroups = true;
         ProtectHome = "tmpfs";
@@ -185,7 +174,9 @@ in {
         RestrictRealtime = true;
         SystemCallArchitectures = "native";
         SystemCallFilter = "~@clock @cpu-emulation @debug @keyring @module @mount @obsolete @raw-io @resources";
-      };
+      } // (if (cfg.group != null) then {
+        Group = cfg.group;
+      } else {});
     };
 
     networking.dhcpcd.denyInterfaces = cfg.denyDhcpcdInterfaces;
diff --git a/nixos/modules/services/security/privacyidea.nix b/nixos/modules/services/security/privacyidea.nix
index c1617348fb014..13e27f255068b 100644
--- a/nixos/modules/services/security/privacyidea.nix
+++ b/nixos/modules/services/security/privacyidea.nix
@@ -51,6 +51,16 @@ let
     ${cfg.extraConfig}
   '';
 
+  renderValue = x:
+    if isList x then concatMapStringsSep "," (x: ''"${x}"'') x
+    else if isString x && hasInfix "," x then ''"${x}"''
+    else x;
+
+  ldapProxyConfig = pkgs.writeText "ldap-proxy.ini"
+    (generators.toINI {}
+      (flip mapAttrs cfg.ldap-proxy.settings
+        (const (mapAttrs (const renderValue)))));
+
 in
 
 {
@@ -172,7 +182,8 @@ in
         enable = mkEnableOption "PrivacyIDEA LDAP Proxy";
 
         configFile = mkOption {
-          type = types.path;
+          type = types.nullOr types.path;
+          default = null;
           description = ''
             Path to PrivacyIDEA LDAP Proxy configuration (proxy.ini).
           '';
@@ -189,6 +200,26 @@ in
           default = "pi-ldap-proxy";
           description = "Group account under which PrivacyIDEA LDAP proxy runs.";
         };
+
+        settings = mkOption {
+          type = with types; attrsOf (attrsOf (oneOf [ str bool int (listOf str) ]));
+          default = {};
+          description = ''
+            Attribute-set containing the settings for <package>privacyidea-ldap-proxy</package>.
+            It's possible to pass secrets using env-vars as substitutes and
+            use the option <xref linkend="opt-services.privacyidea.ldap-proxy.environmentFile" />
+            to inject them via <package>envsubst</package>.
+          '';
+        };
+
+        environmentFile = mkOption {
+          default = null;
+          type = types.nullOr types.str;
+          description = ''
+            Environment file containing secrets to be substituted into
+            <xref linkend="opt-services.privacyidea.ldap-proxy.settings" />.
+          '';
+        };
       };
     };
   };
@@ -276,6 +307,18 @@ in
 
     (mkIf cfg.ldap-proxy.enable {
 
+      assertions = [
+        { assertion = let
+            xor = a: b: a && !b || !a && b;
+          in xor (cfg.ldap-proxy.settings == {}) (cfg.ldap-proxy.configFile == null);
+          message = "configFile & settings are mutually exclusive for services.privacyidea.ldap-proxy!";
+        }
+      ];
+
+      warnings = mkIf (cfg.ldap-proxy.configFile != null) [
+        "Using services.privacyidea.ldap-proxy.configFile is deprecated! Use the RFC42-style settings option instead!"
+      ];
+
       systemd.services.privacyidea-ldap-proxy = let
         ldap-proxy-env = pkgs.python3.withPackages (ps: [ ps.privacyidea-ldap-proxy ]);
       in {
@@ -284,14 +327,27 @@ in
         serviceConfig = {
           User = cfg.ldap-proxy.user;
           Group = cfg.ldap-proxy.group;
-          ExecStart = ''
+          StateDirectory = "privacyidea-ldap-proxy";
+          EnvironmentFile = mkIf (cfg.ldap-proxy.environmentFile != null)
+            [ cfg.ldap-proxy.environmentFile ];
+          ExecStartPre =
+            "${pkgs.writeShellScript "substitute-secrets-ldap-proxy" ''
+              ${pkgs.envsubst}/bin/envsubst \
+                -i ${ldapProxyConfig} \
+                -o $STATE_DIRECTORY/ldap-proxy.ini
+            ''}";
+          ExecStart = let
+            configPath = if cfg.ldap-proxy.settings != {}
+              then "%S/privacyidea-ldap-proxy/ldap-proxy.ini"
+              else cfg.ldap-proxy.configFile;
+          in ''
             ${ldap-proxy-env}/bin/twistd \
               --nodaemon \
               --pidfile= \
               -u ${cfg.ldap-proxy.user} \
               -g ${cfg.ldap-proxy.group} \
               ldap-proxy \
-              -c ${cfg.ldap-proxy.configFile}
+              -c ${configPath}
           '';
           Restart = "always";
         };
diff --git a/pkgs/applications/emulators/yuzu/default.nix b/pkgs/applications/emulators/yuzu/default.nix
index 5c6fd625cf665..bc63771494e27 100644
--- a/pkgs/applications/emulators/yuzu/default.nix
+++ b/pkgs/applications/emulators/yuzu/default.nix
@@ -5,23 +5,23 @@
 }:
 
 let
-  # Fetched from https://api.yuzu-emu.org/gamedb, last updated 2022-05-12
+  # Fetched from https://api.yuzu-emu.org/gamedb, last updated 2022-07-14
   # Please make sure to update this when updating yuzu!
   compat-list = fetchurl {
     name = "yuzu-compat-list";
-    url = "https://web.archive.org/web/20220512184801/https://api.yuzu-emu.org/gamedb";
+    url = "https://web.archive.org/web/20220714160745/https://api.yuzu-emu.org/gamedb";
     sha256 = "sha256-anOmO7NscHDsQxT03+YbJEyBkXjhcSVGgKpDwt//GHw=";
   };
 in {
   mainline = libsForQt5.callPackage ./generic.nix rec {
     pname = "yuzu-mainline";
-    version = "1088";
+    version = "1092";
 
     src = fetchFromGitHub {
       owner = "yuzu-emu";
       repo = "yuzu-mainline";
       rev = "mainline-0-${version}";
-      sha256 = "0kjiynv1fwc14w7382qgzayz5j9n2rnzbpbq49zgcywc4wwcxzs2";
+      sha256 = "1avcq924q0r8pfv1s0a88iyii7yixcxpb3yhlj0xg9zqnwp9r23y";
       fetchSubmodules = true;
     };
 
@@ -30,13 +30,13 @@ in {
 
   early-access = libsForQt5.callPackage ./generic.nix rec {
     pname = "yuzu-ea";
-    version = "2725";
+    version = "2841";
 
     src = fetchFromGitHub {
       owner = "pineappleEA";
       repo = "pineapple-src";
       rev = "EA-${version}";
-      sha256 = "1nmcl9y9chr7cdvnra5zs1v42d3i801hmsjdlz3fmp15n04bcjmp";
+      sha256 = "16lrq9drv0x7gs1siq37m4zmh6d2g3vhnw9qcqajr9p0vmlpnh6l";
       fetchSubmodules = true;
     };
 
diff --git a/pkgs/applications/emulators/yuzu/update.sh b/pkgs/applications/emulators/yuzu/update.sh
index e128db066f35b..8dedcab02813e 100755
--- a/pkgs/applications/emulators/yuzu/update.sh
+++ b/pkgs/applications/emulators/yuzu/update.sh
@@ -53,7 +53,7 @@ updateEarlyAccess() {
     OLD_EA_HASH="$(getLocalHash "yuzu-ea")"
 
     NEW_EA_VERSION="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \
-        "https://api.github.com/repos/pineappleEA/pineapple-src/releases?per_page=1" | jq -r '.[0].name' | cut -d"-" -f2 | cut -d" " -f1)"
+        "https://api.github.com/repos/pineappleEA/pineapple-src/releases?per_page=1" | jq -r '.[0].tag_name' | cut -d"-" -f2 | cut -d" " -f1)"
 
     if [[ "${OLD_EA_VERSION}" = "${NEW_EA_VERSION}" ]]; then
         echo "yuzu-ea is already up to date!"
diff --git a/pkgs/applications/gis/qgis/unwrapped-ltr.nix b/pkgs/applications/gis/qgis/unwrapped-ltr.nix
index 1d59ee220c4b0..e079d347181c2 100644
--- a/pkgs/applications/gis/qgis/unwrapped-ltr.nix
+++ b/pkgs/applications/gis/qgis/unwrapped-ltr.nix
@@ -69,14 +69,14 @@ let
     six
   ];
 in mkDerivation rec {
-  version = "3.22.8";
+  version = "3.22.9";
   pname = "qgis-ltr-unwrapped";
 
   src = fetchFromGitHub {
     owner = "qgis";
     repo = "QGIS";
     rev = "final-${lib.replaceStrings [ "." ] [ "_" ] version}";
-    sha256 = "sha256-YxF7FzyNNt+bdk96g2sWWv9haqV0L6Ab96D0hV0BFrA=";
+    sha256 = "sha256-QHdcK34e7tC0AUstE8pbsBHzHXbmOd3gI2/zqsxb6X4=";
   };
 
   passthru = {
diff --git a/pkgs/applications/gis/qgis/unwrapped.nix b/pkgs/applications/gis/qgis/unwrapped.nix
index 31e2159cd18f1..fe53f0726b4e0 100644
--- a/pkgs/applications/gis/qgis/unwrapped.nix
+++ b/pkgs/applications/gis/qgis/unwrapped.nix
@@ -69,14 +69,14 @@ let
     six
   ];
 in mkDerivation rec {
-  version = "3.26.0";
+  version = "3.26.1";
   pname = "qgis-unwrapped";
 
   src = fetchFromGitHub {
     owner = "qgis";
     repo = "QGIS";
     rev = "final-${lib.replaceStrings [ "." ] [ "_" ] version}";
-    sha256 = "sha256-yHQi5ai7fdgznTf562Bj0QPE+SXg972O7+r01RY7itE=";
+    sha256 = "sha256-FjMe/5uEbmSeQrAtkKvoGh4VlPkbGMHNzlCpn27C5CQ=";
   };
 
   passthru = {
diff --git a/pkgs/applications/networking/irc/weechat/default.nix b/pkgs/applications/networking/irc/weechat/default.nix
index 1b5f797e98c62..1835e59e86c21 100644
--- a/pkgs/applications/networking/irc/weechat/default.nix
+++ b/pkgs/applications/networking/irc/weechat/default.nix
@@ -28,14 +28,14 @@ let
   in
     assert lib.all (p: p.enabled -> ! (builtins.elem null p.buildInputs)) plugins;
     stdenv.mkDerivation rec {
-      version = "3.5";
+      version = "3.6";
       pname = "weechat";
 
       hardeningEnable = [ "pie" ];
 
       src = fetchurl {
         url = "https://weechat.org/files/src/weechat-${version}.tar.bz2";
-        sha256 = "sha256-8ZSa2dQPTiChGW00T5OASHmd0C2PatUtTu9Gr4CF4Oc=";
+        sha256 = "sha256-GkYN/Y4LQQr7GdSDu0ucXXM9wWPAqKD1txJXkOhJMDc=";
       };
 
       outputs = [ "out" "man" ] ++ map (p: p.name) enabledPlugins;
diff --git a/pkgs/applications/version-management/josh/default.nix b/pkgs/applications/version-management/josh/default.nix
new file mode 100644
index 0000000000000..acf2b24c0794e
--- /dev/null
+++ b/pkgs/applications/version-management/josh/default.nix
@@ -0,0 +1,60 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, rustPlatform
+, libgit2
+, openssl
+, pkg-config
+, makeWrapper
+, git
+, darwin
+}:
+
+rustPlatform.buildRustPackage rec {
+  pname = "josh";
+  version = "22.06.22";
+
+  src = fetchFromGitHub {
+    owner = "esrlabs";
+    repo = "josh";
+    rev = "r" + version;
+    sha256 = "0511qv9zyjvv4zfz6zyi69ssbkrwa24n0ah5w9mb4gzd547as8pq";
+  };
+
+  cargoSha256 = "0zfjjyyz4pxar1mfkkj9aij4dnwqy3asdrmay1iy6ijjn1qd97n4";
+
+  nativeBuildInputs = [
+    pkg-config
+    makeWrapper
+  ];
+
+  buildInputs = [
+    libgit2
+    openssl
+  ] ++ lib.optionals stdenv.hostPlatform.isDarwin [
+    darwin.Security
+  ];
+
+  cargoBuildFlags = [
+    "-p" "josh"
+    "-p" "josh-proxy"
+    # TODO: josh-ui
+  ];
+
+  postInstall = ''
+    wrapProgram "$out/bin/josh-proxy" --prefix PATH : "${git}/bin"
+  '';
+
+  meta = {
+    description = "Just One Single History";
+    homepage = "https://josh-project.github.io/josh/";
+    downloadPage = "https://github.com/josh-project/josh";
+    changelog = "https://github.com/josh-project/josh/releases/tag/${version}";
+    license = lib.licenses.mit;
+    maintainers = [
+      lib.maintainers.sternenseemann
+      lib.maintainers.tazjin
+    ];
+    platforms = lib.platforms.all;
+  };
+}
diff --git a/pkgs/development/python-modules/patool/default.nix b/pkgs/development/python-modules/patool/default.nix
index 2fa07d32ccb1d..cbc3a05044ee8 100644
--- a/pkgs/development/python-modules/patool/default.nix
+++ b/pkgs/development/python-modules/patool/default.nix
@@ -1,17 +1,16 @@
 { lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook, p7zip,
-  unzip, cabextract, zip, zopfli, lzip, zpaq, gnutar, gnugrep, diffutils, file,
+  cabextract, zip, lzip, zpaq, gnutar, gnugrep, diffutils, file,
   gzip, bzip2, xz}:
 
 # unrar is unfree, as well as 7z with unrar support, not including it (patool doesn't support unar)
+# it will still use unrar if present in the path
 
 let
   compression-utilities = [
     p7zip
-    unzip
     gnutar
     cabextract
     zip
-    zopfli
     lzip
     zpaq
     gzip
@@ -34,9 +33,9 @@ buildPythonPackage rec {
     sha256 = "0v4r77sm3yzh7y1whfwxmp01cchd82jbhvbg9zsyd2yb944imzjy";
   };
 
-  prePatch = ''
+  postPatch = ''
     substituteInPlace patoolib/util.py \
-      --replace "path = None" 'path = append_to_path(os.environ["PATH"], "${lib.makeBinPath compression-utilities}")'
+      --replace "path = None" 'path = os.environ["PATH"] + ":${lib.makeBinPath compression-utilities}"'
   '';
 
   checkInputs = [ pytestCheckHook ] ++ compression-utilities;
diff --git a/pkgs/games/sgt-puzzles/default.nix b/pkgs/games/sgt-puzzles/default.nix
index 1c0b7aeda4938..7419b6810cb21 100644
--- a/pkgs/games/sgt-puzzles/default.nix
+++ b/pkgs/games/sgt-puzzles/default.nix
@@ -1,39 +1,38 @@
 { lib, stdenv, fetchurl, desktop-file-utils
-, gtk3, libX11
-, makeWrapper, pkg-config, perl, autoreconfHook, wrapGAppsHook
+, gtk3, libX11, cmake, imagemagick
+, pkg-config, perl, wrapGAppsHook
 }:
 
 stdenv.mkDerivation rec {
   pname = "sgt-puzzles";
-  version = "20200610.9aa7b7c";
+  version = "20220613.387d323";
 
   src = fetchurl {
     url = "http://www.chiark.greenend.org.uk/~sgtatham/puzzles/puzzles-${version}.tar.gz";
-    sha256 = "0rrd1c77ar91zqy4rr4xp1z7x3ywnshlac99cga4hnrgwb7vwl3f";
+    hash = "sha256-Vcm7gxC9R7vvLkgkHblvEOONGLkYSHGMRfSBktgN/oQ=";
   };
 
   sgt-puzzles-menu = fetchurl {
-    url = "https://raw.githubusercontent.com/Oleh-Kravchenko/portage/master/games-puzzle/sgt-puzzles/files/sgt-puzzles.menu";
+    url = "https://raw.githubusercontent.com/gentoo/gentoo/720e614d0107e86fc1e520bac17726578186843d/games-puzzle/sgt-puzzles/files/sgt-puzzles.menu";
     sha256 = "088w0x9g3j8pn725ix8ny8knhdsfgjr3hpswsh9fvfkz5vlg2xkm";
   };
 
-  nativeBuildInputs = [ autoreconfHook desktop-file-utils makeWrapper
-    pkg-config perl wrapGAppsHook ];
+  nativeBuildInputs = [
+    cmake
+    desktop-file-utils
+    imagemagick
+    perl
+    pkg-config
+    wrapGAppsHook
+  ];
 
   buildInputs = [ gtk3 libX11 ];
 
-  makeFlags = [ "prefix=$(out)" "gamesdir=$(out)/bin"];
-
-  preInstall = ''
-    mkdir -p "$out"/{bin,share/doc/sgtpuzzles}
-    cp gamedesc.txt LICENCE README "$out/share/doc/sgtpuzzles"
-  '';
-
   postInstall = ''
     for i in  $(basename -s $out/bin/*); do
 
       ln -s $out/bin/$i $out/bin/sgt-puzzle-$i
-      install -Dm644 icons/$i-48d24.png -t $out/share/icons/hicolor/48x48/apps/
+      install -Dm644 icons/$i-96d24.png -t $out/share/icons/hicolor/96x96/apps/
 
       # Generate/validate/install .desktop files.
       echo "[Desktop Entry]" > $i.desktop
@@ -43,7 +42,7 @@ stdenv.mkDerivation rec {
         --set-key Name --set-value $i \
         --set-key Comment --set-value "${meta.description}" \
         --set-key Categories --set-value "Game;LogicGame;X-sgt-puzzles;" \
-        --set-key Icon --set-value $out/share/icons/hicolor/48x48/apps/$i-48d24 \
+        --set-key Icon --set-value $out/share/icons/hicolor/96x96/apps/$i-96d24.png \
         $i.desktop
     done
 
@@ -57,16 +56,10 @@ stdenv.mkDerivation rec {
     install -Dm644 ${sgt-puzzles-menu} -t $out/etc/xdg/menus/applications-merged/
   '';
 
-  preConfigure = ''
-    perl mkfiles.pl
-    export NIX_LDFLAGS="$NIX_LDFLAGS -lX11"
-    export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -Wno-error"
-    cp Makefile.gtk Makefile
-  '';
   meta = with lib; {
     description = "Simon Tatham's portable puzzle collection";
     license = licenses.mit;
-    maintainers = [ maintainers.raskin ];
+    maintainers = with maintainers; [ raskin tomfitzhenry ];
     platforms = platforms.linux;
     homepage = "https://www.chiark.greenend.org.uk/~sgtatham/puzzles/";
   };
diff --git a/pkgs/servers/polaris/default.nix b/pkgs/servers/polaris/default.nix
index fb9384ea05185..da53dc99252a3 100644
--- a/pkgs/servers/polaris/default.nix
+++ b/pkgs/servers/polaris/default.nix
@@ -38,6 +38,11 @@ rustPlatform.buildRustPackage rec {
     cp -a docs/swagger $out/share/polaris-swagger
   '';
 
+  preCheck = ''
+    # 'Err' value: Os { code: 24, kind: Uncategorized, message: "Too many open files" }
+    ulimit -n 4096
+  '';
+
   passthru.updateScript = ./update.sh;
 
   meta = with lib; {
diff --git a/pkgs/servers/rt/default.nix b/pkgs/servers/rt/default.nix
index a113c25f396cd..894da7a652eef 100644
--- a/pkgs/servers/rt/default.nix
+++ b/pkgs/servers/rt/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "rt";
-  version = "5.0.2";
+  version = "5.0.3";
 
   src = fetchFromGitHub {
     repo = pname;
     rev = "${pname}-${version}";
     owner = "bestpractical";
-    sha256 = "1qdvbsmdynjw2v0clnmhdmrky7w4dsiysv92n7d7jdbawnicqahn";
+    hash = "sha256-ZitlueLEbV3mGJg0aDrLa5IReJiOVaEf+JicbA9zUS4=";
   };
 
   patches = [
@@ -120,8 +120,7 @@ stdenv.mkDerivation rec {
   ];
 
   preAutoreconf = ''
-    substituteInPlace configure.ac \
-      --replace "rt-3.9.EXPORTED" "rt-${version}"
+    echo rt-${version} > .tag
   '';
   preConfigure = ''
     configureFlags="$configureFlags --with-web-user=$UID"
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 89a5d5442d736..a40bad9db5af9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3410,8 +3410,6 @@ with pkgs;
 
   dconf = callPackage ../development/libraries/dconf { };
 
-  dcw-gmt = callPackage ../applications/gis/gmt/dcw.nix { };
-
   ddate = callPackage ../tools/misc/ddate { };
 
   ddosify = callPackage ../development/tools/ddosify { };
@@ -3839,11 +3837,6 @@ with pkgs;
     variant = "krita";
   };
 
-  gmt = callPackage ../applications/gis/gmt {
-    inherit (darwin.apple_sdk.frameworks)
-      Accelerate CoreGraphics CoreVideo;
-  };
-
   gpg-tui = callPackage ../tools/security/gpg-tui {
     inherit (darwin.apple_sdk.frameworks) AppKit Foundation;
     inherit (darwin) libobjc libresolv;
@@ -25598,6 +25591,38 @@ with pkgs;
 
   zuki-themes = callPackage ../data/themes/zuki { };
 
+  ### APPLICATIONS / GIS
+
+  gmt = callPackage ../applications/gis/gmt {
+    inherit (darwin.apple_sdk.frameworks)
+      Accelerate CoreGraphics CoreVideo;
+  };
+
+  gshhg-gmt = callPackage ../applications/gis/gmt/gshhg.nix { };
+
+  dcw-gmt = callPackage ../applications/gis/gmt/dcw.nix { };
+
+  grass = callPackage ../applications/gis/grass { };
+
+  openorienteering-mapper = libsForQt5.callPackage ../applications/gis/openorienteering-mapper { };
+
+  qgis-ltr = callPackage ../applications/gis/qgis/ltr.nix { };
+
+  qgis = callPackage ../applications/gis/qgis { };
+
+  qmapshack = libsForQt5.callPackage ../applications/gis/qmapshack { };
+
+  saga = libsForQt5.callPackage ../applications/gis/saga {
+    inherit (darwin.apple_sdk.frameworks) Cocoa;
+  };
+
+  udig = callPackage ../applications/gis/udig { };
+
+  whitebox-tools = callPackage ../applications/gis/whitebox-tools {
+    inherit (darwin.apple_sdk.frameworks) Security;
+  };
+
+  zombietrackergps = libsForQt5.callPackage ../applications/gis/zombietrackergps { };
 
   ### APPLICATIONS
 
@@ -26961,8 +26986,6 @@ with pkgs;
 
   gpx-viewer = callPackage ../applications/misc/gpx-viewer { };
 
-  grass = callPackage ../applications/gis/grass { };
-
   grepcidr = callPackage ../applications/search/grepcidr { };
 
   grepm = callPackage ../applications/search/grepm { };
@@ -27291,6 +27314,8 @@ with pkgs;
 
   jmusicbot = callPackage ../applications/audio/jmusicbot { };
 
+  josh = callPackage ../applications/version-management/josh { };
+
   junction = callPackage ../applications/misc/junction { };
 
   lemonade = callPackage ../applications/misc/lemonade { };
@@ -29333,8 +29358,6 @@ with pkgs;
     vm = callPackage ../applications/audio/open-music-kontrollers/vm.nix { };
   };
 
-  openorienteering-mapper = libsForQt5.callPackage ../applications/gis/openorienteering-mapper { };
-
   openscad = libsForQt5.callPackage ../applications/graphics/openscad {};
 
   open-stage-control = callPackage ../applications/audio/open-stage-control {
@@ -29725,10 +29748,6 @@ with pkgs;
 
   wrapQemuBinfmtP = callPackage ../applications/virtualization/qemu/binfmt-p-wrapper.nix { };
 
-  qgis-ltr = callPackage ../applications/gis/qgis/ltr.nix { };
-
-  qgis = callPackage ../applications/gis/qgis { };
-
   qgroundcontrol = libsForQt5.callPackage ../applications/science/robotics/qgroundcontrol { };
 
   qjackctl = libsForQt5.callPackage ../applications/audio/qjackctl { };
@@ -29746,8 +29765,6 @@ with pkgs;
 
   garmindev = callPackage ../applications/misc/qlandkartegt/garmindev.nix {};
 
-  qmapshack = libsForQt5.callPackage ../applications/gis/qmapshack { };
-
   qmediathekview = libsForQt5.callPackage ../applications/video/qmediathekview { };
 
   qmplay2 = libsForQt5.callPackage ../applications/video/qmplay2 { };
@@ -31171,10 +31188,6 @@ with pkgs;
     wlroots = wlroots_0_14;
   };
 
-  whitebox-tools = callPackage ../applications/gis/whitebox-tools {
-    inherit (darwin.apple_sdk.frameworks) Security;
-  };
-
   windowlab = callPackage ../applications/window-managers/windowlab { };
 
   windowmaker = callPackage ../applications/window-managers/windowmaker { };
@@ -31610,8 +31623,6 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) CoreServices;
   };
 
-  zombietrackergps = libsForQt5.callPackage ../applications/gis/zombietrackergps { };
-
   zoom-us = callPackage ../applications/networking/instant-messengers/zoom-us { };
 
   zotero = callPackage ../applications/office/zotero { };
@@ -31903,10 +31914,6 @@ with pkgs;
 
   quorum = callPackage ../applications/blockchains/quorum { };
 
-  saga = libsForQt5.callPackage ../applications/gis/saga {
-    inherit (darwin.apple_sdk.frameworks) Cocoa;
-  };
-
   samplv1 = libsForQt5.callPackage ../applications/audio/samplv1 { };
 
   scaleft = callPackage ../applications/networking/scaleft { };
@@ -31932,8 +31939,6 @@ with pkgs;
 
   drumkv1 = libsForQt5.callPackage ../applications/audio/drumkv1 { };
 
-  gshhg-gmt = callPackage ../applications/gis/gmt/gshhg.nix { };
-
   eureka-editor = callPackage ../applications/misc/eureka-editor { };
 
   eureka-ideas = callPackage ../applications/misc/eureka-ideas {
@@ -32985,8 +32990,6 @@ with pkgs;
 
   uchess = callPackage ../games/uchess { };
 
-  udig = callPackage ../applications/gis/udig { };
-
   ufoai = callPackage ../games/ufoai { };
 
   uhexen2 = callPackage ../games/uhexen2 { };
diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 244711fa90134..3e85dd0713e1f 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -6590,10 +6590,10 @@ let
 
   DBIxSearchBuilder = buildPerlPackage {
     pname = "DBIx-SearchBuilder";
-    version = "1.68";
+    version = "1.71";
     src = fetchurl {
-      url = "mirror://cpan/authors/id/B/BP/BPS/DBIx-SearchBuilder-1.68.tar.gz";
-      sha256 = "be197c0f83c426996f77d22126f3103f958fc4bd1791c6962b793cc2779601f8";
+      url = "mirror://cpan/authors/id/B/BP/BPS/DBIx-SearchBuilder-1.71.tar.gz";
+      sha256 = "1ga2sjis6lg51z58il8q165klc38dmb3wj3phyxjfjg6yskdsbz4";
     };
     buildInputs = [ DBDSQLite ];
     propagatedBuildInputs = [ CacheSimpleTimedExpiry ClassAccessor ClassReturnValue Clone DBIxDBSchema Want capitalization ];
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-08-25 03:53:38 +0000